MicrobesOnline Operon Predictions for Wolbachia endosymbiont of Drosophila simulans

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 2332548 2332549 WwSim0284 WwSim0285 gale   TRUE 0.847 -43.000 0.000 0.017 Y NA
 2332549 2332550 WwSim0285 WwSim0286     TRUE 0.783 -39.000 0.000 1.000   NA
 2332550 2332551 WwSim0286 WwSim0287     FALSE 0.069 4.000 0.000 NA   NA
 2332551 2332552 WwSim0287 WwSim0288   abcT3 FALSE 0.067 1.000 0.000 NA   NA
 2332552 2332553 WwSim0288 WwSim0289 abcT3   TRUE 0.786 2.000 0.000 1.000 N NA
 2332553 2332554 WwSim0289 WwSim0290     TRUE 0.857 -3.000 0.000 0.004 Y NA
 2332554 2332555 WwSim0290 WwSim0291   glpT FALSE 0.303 128.000 0.000 1.000 N NA
 2332556 2332557 WwSim0292 WwSim0293 udg   TRUE 0.838 65.000 0.000 0.057   NA
 2332557 2332558 WwSim0293 WwSim0294     FALSE 0.199 484.000 0.000 1.000   NA
 2332558 2332559 WwSim0294 WwSim0295     FALSE 0.611 98.000 0.000 0.021   NA
 2332559 2332560 WwSim0295 WwSim0296     FALSE 0.042 76.000 0.000 NA   NA
 2332561 2332562 WwSim0368 WwSim0369     TRUE 0.875 5.000 0.889 NA   NA
 2332562 2332563 WwSim0369 WwSim0370     TRUE 0.876 5.000 0.333 NA   NA
 2332563 2332564 WwSim0370 WwSim0371   dapA FALSE 0.005 740.000 0.000 NA   NA
 2332566 2332567 WwSim0373 WwSim0374 gltX1 dnaE FALSE 0.195 659.000 0.000 1.000 N NA
 2332568 2332569 WwSim0107 WwSim0108   clpB TRUE 0.954 28.000 0.004 1.000   NA
 2332573 2332574 WwSim0112 WwSim0113 pyrE   TRUE 0.952 4.000 0.013 1.000 N NA
 2332574 2332575 WwSim0113 WwSim0114     FALSE 0.194 199.000 0.000 1.000 N NA
 2332575 2332576 WwSim0114 WwSim0115     FALSE 0.056 61.000 0.000 NA   NA
 2332578 2332579 WwSim0342 WwSim0343     TRUE 0.953 43.000 0.700 1.000   NA
 2332579 2332580 WwSim0343 WwSim0344   pgpA TRUE 0.949 -10.000 0.018 1.000   NA
 2332580 2332581 WwSim0344 WwSim0345 pgpA   TRUE 0.954 20.000 0.005 1.000 N NA
 2332586 2332587 WwSim0626 WwSim0627     TRUE 0.953 39.000 0.047 1.000 N NA
 2332587 2332588 WwSim0627 WwSim0628   rimM TRUE 0.776 99.000 0.003 1.000 Y NA
 2332588 2332589 WwSim0628 WwSim0630 rimM   TRUE 0.800 15.000 0.000 1.000 N NA
 2332590 2332591 WwSim0629 WwSim0631   barA FALSE 0.005 522.000 0.000 NA   NA
 2332591 2332592 WwSim0631 WwSim0632 barA   FALSE 0.548 178.000 0.002 1.000 N NA
 2332592 2332593 WwSim0632 WwSim0633   recF TRUE 0.953 17.000 0.004 1.000 N NA
 2332596 2332597 WwSim0412 WwSim0413   fMet FALSE 0.005 833.000 0.000 NA   NA
 2332597 2332598 WwSim0413 WwSim0414 fMet   FALSE 0.646 81.000 0.000 1.000   NA
 2332601 2332602 WwSim0094 WwSim0095     FALSE 0.292 129.000 0.000 1.000 N NA
 2332602 2332603 WwSim0095 WwSim0096     FALSE 0.005 833.000 0.000 NA   NA
 2332604 2332605 WwSim0563 WwSim0564 mraY rnhB TRUE 0.930 61.000 0.002 1.000 N NA
 2332607 2332608 WwSim0566 WwSim0567 nuoN2 rodA FALSE 0.592 156.000 0.005 1.000 N NA
 2332608 2332609 WwSim0567 WwSim0568 rodA purF TRUE 0.799 26.000 0.000 1.000 N NA
 2332611 2332612 WwSim0465 WwSim0466 dxr pXO1 FALSE 0.214 1161.000 0.000 1.000 N NA
 2332612 2332613 WwSim0466 WwSim0467 pXO1   FALSE 0.064 -3.000 0.000 NA   NA
 2332614 2332615 WwSim0468 WwSim0469 iscS   FALSE 0.004 287.000 0.000 NA   NA
 2332616 2332617 WwSim0032 WwSim0033 guaB ksgA TRUE 0.947 41.000 0.003 1.000 N NA
 2332620 2332621 WwSim0036 WwSim0037   ddlB FALSE 0.035 80.000 0.000 NA   NA
 2332625 2332626 WwSim0043 WwSim0044   dnaQ TRUE 0.957 25.000 0.010 1.000   NA
 2332626 2332627 WwSim0044 WwSim0045 dnaQ sco2 TRUE 0.952 45.000 0.007 1.000   NA
 2332627 2332628 WwSim0045 WwSim0046 sco2 gyrB2 FALSE 0.194 289.000 0.000 1.000   NA
 2332629 2332630 WwSim0074 WwSim0075     FALSE 0.004 463.000 0.000 NA   NA
 2332630 2332631 WwSim0075 WwSim0076   uvrC FALSE 0.181 326.000 0.000 1.000 N NA
 2332631 2332632 WwSim0076 WwSim0077 uvrC glyS TRUE 0.942 -16.000 0.003 1.000 N NA
 2332632 2332633 WwSim0077 WwSim0078 glyS   TRUE 0.966 4.000 0.651 0.004 Y NA
 2332634 2332635 WwSim0086 WwSim0087     FALSE 0.196 1056.000 0.000 1.000 Y NA
 2332635 2332636 WwSim0087 WwSim0088     TRUE 0.946 59.000 0.053 1.000   NA
 2332638 2332639 WwSim0403 WwSim0404 purL   FALSE 0.624 96.000 0.013 NA   NA
 2332641 2332642 WwSim0636 WwSim0637     FALSE 0.266 141.000 0.000 1.000   NA
 2332646 2332647 WwSim0011 WwSim0012 lap   FALSE 0.211 695.000 0.000 1.000   NA
 2332650 2332651 WwSim0606 WwSim0607 petA gyrA FALSE 0.521 213.000 0.003 1.000 N NA
 2332653 2332654 WwSim0231 WwSim0232     TRUE 0.932 67.000 0.006 1.000 N NA
 2332656 2332657 WwSim0553 WwSim0554 ffh   TRUE 0.928 75.000 0.008 1.000 N NA
 2332657 2332658 WwSim0554 WwSim0555     FALSE 0.181 289.000 0.000 1.000 N NA
 2332659 2332660 WwSim0272 WwSim0273     TRUE 0.882 14.000 0.500 NA   NA
 2332660 2332661 WwSim0273 WwSim0274     TRUE 0.874 4.000 0.500 NA   NA
 2332661 2332662 WwSim0274 WwSim0275     FALSE 0.327 174.000 1.000 NA   NA
 2332662 2332663 WwSim0275 WwSim0276     FALSE 0.064 -3.000 0.000 NA   NA
 2332664 2332665 WwSim0530 WwSim0531   topA FALSE 0.004 277.000 0.000 NA   NA
 2332674 2332675 WwSim0574 WwSim0575     TRUE 0.824 71.000 0.005 NA   NA
 2332681 2332682 WwSim0277 WwSim0278     TRUE 0.950 -3.000 0.667 1.000   NA
 2332685 2332686 WwSim0391 WwSim0392   grpE TRUE 0.748 104.000 0.005 1.000 N NA
 2332686 2332687 WwSim0392 WwSim0393 grpE trpS TRUE 0.801 18.000 0.000 1.000 N NA
 2332688 2332689 WwSim0394 WwSim0395   cycM TRUE 0.752 107.000 0.037 1.000   NA
 2332692 2332693 WwSim0438 WwSim0439 nuoJ nuoL1 FALSE 0.296 304.000 0.000 0.025   NA
 2332694 2332695 WwSim0544 WwSim0545     FALSE 0.006 142.000 0.000 NA   NA
 2332696 2332697 WwSim0546 WwSim0547   recR FALSE 0.069 4.000 0.000 NA   NA
 2332700 2332701 WwSim0318 WwSim0319 pXO1   FALSE 0.064 -3.000 0.000 NA   NA
 2332701 2332702 WwSim0319 WwSim0320     FALSE 0.007 140.000 0.000 NA   NA
 2332705 2332706 WwSim0613 WwSim0614   soj TRUE 0.830 91.000 0.003 1.000 N NA
 2332706 2332707 WwSim0614 WwSim0615 soj parB TRUE 0.947 -3.000 0.827 1.000 N NA
 2332708 2332709 WwSim0174 WwSim0175   coxW TRUE 0.873 27.000 0.009 NA N NA
 2332710 2332711 WwSim0176 WwSim0177 pccA   FALSE 0.364 145.000 0.021 NA   NA
 2332712 2332713 WwSim0477 WwSim0478   gidA TRUE 0.810 9.000 0.000 1.000   NA
 2332715 2332716 WwSim0455 WwSim0456     FALSE 0.005 542.000 0.000 NA   NA
 2332716 2332717 WwSim0456 WwSim0457     TRUE 0.859 -85.000 0.500 NA   NA
 2332718 2332719 WwSim0236 WwSim0237     FALSE 0.337 168.000 1.000 NA   NA
 2332719 2332720 WwSim0237 WwSim0238     TRUE 0.870 0.000 0.167 NA   NA
 2332721 2332722 WwSim0519 WwSim0520 truA fbcH FALSE 0.184 469.000 0.000 1.000 N NA
 2332722 2332723 WwSim0520 WwSim0521 fbcH petB TRUE 0.964 0.000 0.630 0.005 Y NA
 2332725 2332726 WwSim0259 WwSim0260 folD ubiX TRUE 0.944 -16.000 0.120 1.000 Y NA
 2332726 2332727 WwSim0260 WwSim0261 ubiX   FALSE 0.004 273.000 0.000 NA N NA
 2332727 2332728 WwSim0261 WwSim0262     FALSE 0.404 131.000 0.008 NA N NA
 2332731 2332732 WwSim0058 WwSim0059 cvpA   TRUE 0.945 58.000 0.003 1.000   NA
 2332732 2332733 WwSim0059 WwSim0060     FALSE 0.286 182.000 0.002 NA   NA
 2332735 2332736 WwSim0144 WwSim0145 lon clpX TRUE 0.760 103.000 0.201 1.000 Y NA
 2332736 2332737 WwSim0145 WwSim0146 clpX clpP TRUE 0.947 0.000 0.352 1.000 Y NA
 2332740 2332741 WwSim0538 WwSim0539   xerD FALSE 0.004 366.000 0.000 NA   NA
 2332741 2332742 WwSim0539 WwSim0540 xerD plsC TRUE 0.942 56.000 0.003 1.000 N NA
 2332742 2332743 WwSim0540 WwSim0541 plsC gltA FALSE 0.182 402.000 0.000 1.000 N NA
 2332748 2332749 WwSim0137 WwSim0138 purA ccmC FALSE 0.183 276.000 0.000 1.000 N NA
 2332751 2332752 WwSim0120 WwSim0121     FALSE 0.005 586.000 0.000 NA   NA
 2332755 2332756 WwSim0172 WwSim0173 atpB   FALSE 0.300 779.000 0.000 0.007 Y NA
 2332757 2332758 WwSim0118 WwSim0119   yigN FALSE 0.005 1363.000 0.000 NA   NA
 2332759 2332760 WwSim0363 WwSim0364 nth   TRUE 0.955 22.000 0.003 1.000   NA
 2332760 2332761 WwSim0364 WwSim0365     TRUE 0.898 84.000 0.034 1.000   NA
 2332762 2332763 WwSim0083 WwSim0084 mutS   FALSE 0.004 308.000 0.000 NA   NA
 2332765 2332766 WwSim0646 WwSim0647   nusA TRUE 0.811 10.000 0.000 1.000   NA
 2332766 2332767 WwSim0647 WwSim0648 nusA acrD FALSE 0.697 89.000 0.005 NA   NA
 2332768 2332769 WwSim0099 WwSim0100 ccmF   FALSE 0.004 207.000 0.000 NA   NA
 2332770 2332771 WwSim0068 WwSim0069 mraW   FALSE 0.207 1046.000 0.000 1.000 N NA
 2332771 2332772 WwSim0069 WwSim0070   pth TRUE 0.963 0.000 0.496 0.026 Y NA
 2332775 2332776 WwSim0387 WwSim0388     TRUE 0.883 18.000 0.010 NA   NA
 2332780 2332781 WwSim0005 WwSim0006     FALSE 0.004 304.000 0.000 NA   NA
 2332787 2332788 WwSim0549 WwSim0550     FALSE 0.618 85.000 0.000 1.000   NA
 2332788 2332789 WwSim0550 WwSim0551     TRUE 0.949 -7.000 0.062 1.000   NA
 2332792 2332793 WwSim0505 WwSim0506     TRUE 0.860 -40.000 0.200 NA   NA
 2332794 2332795 WwSim0587 WwSim0588 algA   FALSE 0.528 269.000 0.007 1.000 Y NA
 2332797 2332798 WwSim0498 WwSim0499 pccB mutM FALSE 0.184 255.000 0.000 1.000 N NA
 2332798 2332799 WwSim0499 WwSim0500 mutM pdxH TRUE 0.941 -40.000 0.003 1.000 N NA
 2332800 2332801 WwSim0221 WwSim0222 lepA   FALSE 0.543 185.000 0.002 1.000   NA
 2332802 2332803 WwSim0440 WwSim0441 nuoL1 nuoM TRUE 0.968 4.000 0.251 0.014   NA
 2332803 2332804 WwSim0441 WwSim0442 nuoM   TRUE 0.966 -3.000 0.453 0.014   NA
 2332805 2332806 WwSim0186 WwSim0187   nhaC TRUE 0.877 35.000 0.000 0.077   NA
 2332807 2332808 WwSim0488 WwSim0489 purQ pstA TRUE 0.952 7.000 0.005 1.000 N NA
 2332809 2332810 WwSim0443 WwSim0444     TRUE 0.957 18.000 0.032 1.000   NA
 2332811 2332812 WwSim0090 WwSim0091 pstC atpD TRUE 0.831 102.000 0.003 0.077 N NA
 2332813 2332814 WwSim0245 WwSim0246 rlpA   FALSE 0.005 870.000 0.000 NA   NA
 2332816 2332817 WwSim0561 WwSim0562     TRUE 0.944 -3.000 0.002 1.000   NA
 2332818 2332819 WwSim0492 WwSim0493 hemE aatA TRUE 0.829 91.000 0.002 1.000 N NA
 2332820 2332821 WwSim0050 WwSim0051   coaE FALSE 0.511 392.000 0.002 1.000   NA
 2332822 2332823 WwSim0526 WwSim0527     FALSE 0.004 478.000 0.000 NA   NA
 2332825 2332826 WwSim0644 WwSim0645 ubiA   FALSE 0.192 571.000 0.000 1.000 N NA
 2332829 2332830 WwSim0323 WwSim0324     FALSE 0.004 329.000 0.000 NA   NA
 2332835 2332836 WwSim0639 WwSim0640 purE mutL TRUE 0.950 8.000 0.003 1.000 N NA
 2332838 2332839 WwSim0501 WwSim0502     TRUE 0.819 62.000 0.002 NA   NA
 2332840 2332841 WwSim0055 WwSim0056     TRUE 0.777 78.000 0.007 NA N NA
 2332842 2332843 WwSim0053 WwSim0054 metK   TRUE 0.870 40.000 0.014 NA N NA
 2332845 2332846 WwSim0494 WwSim0495     TRUE 0.790 76.000 0.000 0.022 Y NA
 2332850 2332851 WwSim0304 WwSim0305     TRUE 0.805 76.000 1.000 NA   NA
 2332851 2332852 WwSim0305 WwSim0306     FALSE 0.654 91.000 1.000 NA   NA
 2332853 2332854 WwSim0063 WwSim0064   def TRUE 0.949 53.000 0.010 1.000 N NA
 2332856 2332857 WwSim0470 WwSim0471 hemD xth TRUE 0.950 0.000 0.019 1.000 N NA
 2332862 2332863 WwSim0620 WwSim0621     FALSE 0.027 88.000 0.000 NA   NA
 2332863 2332864 WwSim0621 WwSim0622     TRUE 0.941 -16.000 0.002 1.000   NA
 2332871 2332872 WwSim0338 WwSim0339 pbpA1   TRUE 0.945 -45.000 0.039 1.000 N NA
 2332876 2332877 WwSim0268 WwSim0269     FALSE 0.005 197.000 0.000 NA   NA
 2332877 2332878 WwSim0269 WwSim0270     TRUE 0.880 12.000 0.667 NA   NA
 2332879 2332880 WwSim0542 WwSim0543     FALSE 0.009 124.000 0.000 NA   NA
 2332884 2332885 WwSim0130 WwSim0131 coxB coxA TRUE 0.970 16.000 0.741 0.007   NA
 2332885 2332886 WwSim0131 WwSim0132 coxA   TRUE 0.967 2.000 0.153 0.074   NA
 2332887 2332888 WwSim0101 WwSim0102   secF FALSE 0.005 201.000 0.000 NA   NA
 2332889 2332890 WwSim0447 WwSim0448 cox11 sad TRUE 0.953 1.000 0.010 1.000   NA
 2332890 2332891 WwSim0448 WwSim0449 sad   TRUE 0.898 80.000 0.002 1.000   NA
 2332892 2332893 WwSim0354 WwSim0355   pdhD TRUE 0.965 -7.000 0.015 0.049   NA
 2332894 2332895 WwSim0429 WwSim0430 pyrB   FALSE 0.186 204.000 0.000 1.000 N NA
 2332896 2332897 WwSim0503 WwSim0504 acp   FALSE 0.478 123.000 0.065 NA   NA
 2332898 2332899 WwSim0097 WwSim0098   recO FALSE 0.004 207.000 0.000 NA   NA
 2332900 2332901 WwSim0590 WwSim0591 rhlE   FALSE 0.004 204.000 0.000 NA   NA
 2332903 2332904 WwSim0018 WwSim0019 rplA rplJ TRUE 0.968 13.000 0.302 0.010 Y NA
 2332904 2332905 WwSim0019 WwSim0020 rplJ   FALSE 0.200 487.000 0.000 1.000   NA
 2332906 2332907 WwSim0198 WwSim0200     FALSE 0.005 202.000 0.000 NA   NA
 2332912 2332913 WwSim0558 WwSim0559   rpsA FALSE 0.227 1060.000 0.000 1.000   NA
 2332916 2332917 WwSim0126 WwSim0127     FALSE 0.061 -60.000 0.000 NA   NA
 2332925 2332926 WwSim0433 WwSim0434 murE metC TRUE 0.962 -25.000 0.008 0.052 N NA
 2332927 2332928 WwSim0463 WwSim0464   mkl TRUE 0.868 17.000 0.178 NA Y NA
 2332931 2332932 WwSim0611 WwSim0612     FALSE 0.005 169.000 0.000 NA   NA
 2332933 2332934 WwSim0025 WwSim0026     FALSE 0.006 149.000 0.000 NA   NA
 2332935 2332936 WwSim0079 WwSim0080 hemB nuoH TRUE 0.945 -7.000 0.005 1.000 N NA
 2332937 2332938 WwSim0474 WwSim0475     FALSE 0.070 6.000 0.000 NA   NA
 2332939 2332940 WwSim0582 WwSim0583 murA thyA TRUE 0.729 112.000 0.007 1.000 N NA
 2332946 2332947 WwSim0352 WwSim0353     FALSE 0.196 437.000 0.000 1.000   NA
 2332948 2332949 WwSim0234 WwSim0235     FALSE 0.005 561.000 0.000 NA   NA
 2332961 2332962 WwSim0379 WwSim0380     FALSE 0.074 23.000 0.000 NA   NA
 2332965 2332966 WwSim0047 WwSim0048 ispG   TRUE 0.882 26.000 0.009 NA   NA
 2332968 2332969 WwSim0485 WwSim0486   glyA TRUE 0.803 41.000 0.000 1.000   NA
 2332971 2332972 WwSim0515 WwSim0516     FALSE 0.203 560.000 0.000 1.000   NA
 2332974 2332975 WwSim0427 WwSim0428 dhpS folA TRUE 0.951 12.000 0.005 1.000 Y NA
 2332981 2332982 WwSim0507 WwSim0508     TRUE 0.868 53.000 0.016 NA   NA
 2332985 2332986 WwSim0252 WwSim0253 cdsA uppS TRUE 0.949 -10.000 0.400 1.000   NA
 2332988 2332989 WwSim0207 WwSim0208     FALSE 0.007 136.000 0.000 NA   NA
 2332992 2332993 WwSim0226 WwSim0227     TRUE 0.953 8.000 0.012 1.000 N NA
 2332997 2332998 WwSim0116 WwSim0117 argB   TRUE 0.949 -25.000 0.046 1.000   NA
 2333012 2333013 WwSim0592 WwSim0593     TRUE 0.775 59.000 0.000 1.000   NA
 2333020 2333021 WwSim0194 WwSim0195 ubiE ftsW TRUE 0.790 -3.000 0.000 1.000   NA
 2333027 2333028 WwSim0215 WwSim0216 pyrF   FALSE 0.071 31.000 0.000 NA   NA
 2333029 2333030 WwSim0254 WwSim0255 pXO1   FALSE 0.196 284.000 0.000 1.000   NA
 2333068 2333069 WwSim0616 WwSim0617     FALSE 0.208 199.000 0.000 1.000   NA
 2333072 2333073 WwSim0180 WwSim0181     FALSE 0.012 103.000 0.000 NA   NA
 2333081 2333082 WwSim0417 WwSim0419   ftsY FALSE 0.023 90.000 0.000 NA   NA
 2333087 2333088 WwSim0523 WwSim0524   hisS TRUE 0.949 -3.000 0.004 1.000   NA
 2333120 2333121 WwSim0212 WwSim0213   tatC TRUE 0.790 -3.000 0.000 1.000   NA
 2333130 2333131 WwSim0496 WwSim0497     FALSE 0.025 89.000 0.000 NA   NA
 2333181 2333182 WwSim0271 WwSim0270_5     FALSE 0.064 -3.000 0.000 NA   NA