MicrobesOnline Operon Predictions for Chlamydia trachomatis B/Jali20/OT

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 7661410 7661411 JALI_0021 JALI_0031 gatC gatA TRUE 0.994 12.000 0.643 0.005 Y NA
 7661411 7661412 JALI_0031 JALI_0041 gatA gatB TRUE 0.993 2.000 0.492 0.005 Y NA
 7661413 7661414 JALI_0051 JALI_0061     FALSE 0.276 128.000 0.667 NA   NA
 7661418 7661419 JALI_0101 JALI_0111 htrB   FALSE 0.207 131.000 0.222 NA   NA
 7661419 7661420 JALI_0111 JALI_0121     TRUE 0.810 -3.000 0.018 NA   NA
 7661421 7661422 JALI_0131 JALI_0141 cydA cydB TRUE 0.994 12.000 0.622 0.024 Y NA
 7661424 7661425 JALI_0161 JALI_0171     FALSE 0.263 186.000 0.750 NA   NA
 7661428 7661429 JALI_0201 JALI_0211 lepB   FALSE 0.209 186.000 0.333 NA   NA
 7661430 7661431 JALI_0221 JALI_0231 rpmE prfA TRUE 0.500 188.000 0.005 1.000 Y NA
 7661431 7661432 JALI_0231 JALI_0241 prfA   TRUE 0.954 -16.000 0.009 1.000 Y NA
 7661432 7661433 JALI_0241 JALI_0251   ffh TRUE 0.863 -3.000 0.005 1.000 N NA
 7661433 7661434 JALI_0251 JALI_0261 ffh rpsP TRUE 0.920 -9.000 0.361 1.000 N NA
 7661434 7661435 JALI_0261 JALI_0271 rpsP trmD TRUE 0.985 16.000 0.033 1.000 Y NA
 7661435 7661436 JALI_0271 JALI_0281 trmD rplS TRUE 0.983 26.000 0.567 1.000 Y NA
 7661436 7661437 JALI_0281 JALI_0291 rplS rnhB TRUE 0.648 63.000 0.066 1.000 N NA
 7661437 7661438 JALI_0291 JALI_0301 rnhB gmk TRUE 0.807 -9.000 0.003 1.000 N NA
 7661438 7661439 JALI_0301 JALI_0311 gmk   TRUE 0.560 -7.000 0.003 NA   NA
 7661439 7661440 JALI_0311 JALI_0321   metG TRUE 0.790 0.000 0.008 NA   NA
 7661441 7661442 JALI_0331 JALI_0341 recD   FALSE 0.056 248.000 0.000 1.000   NA
 7661444 7661445 JALI_0361 JALI_0362     FALSE 0.080 61.000 0.000 NA   NA
 7661445 10800757 JALI_0362 JALI_t11     FALSE 0.063 65.000 0.000 NA   NA
 10800757 7661446 JALI_t11 JALI_0371     FALSE 0.070 63.000 0.000 NA   NA
 7661446 7661447 JALI_0371 JALI_0381   dcd TRUE 0.842 22.000 0.021 NA   NA
 7661448 7661449 JALI_0391 JALI_0401   ruvB FALSE 0.154 42.000 0.000 NA   NA
 7661449 7661450 JALI_0401 JALI_0411 ruvB   TRUE 0.783 2.000 0.007 NA   NA
 7661451 7661452 JALI_0421 JALI_0431     FALSE 0.292 118.000 0.261 1.000   NA
 7661453 7661454 JALI_0441 JALI_0451 ssb   FALSE 0.288 341.000 0.013 1.000 N NA
 7661454 7661455 JALI_0451 JALI_0452     FALSE 0.188 137.000 0.017 1.000   NA
 7661455 7661456 JALI_0452 JALI_0461     FALSE 0.208 155.000 0.006 0.060   NA
 7661456 7661457 JALI_0461 JALI_0471     FALSE 0.216 95.000 0.007 1.000   NA
 7661457 7661458 JALI_0471 JALI_0481     FALSE 0.214 91.000 0.014 NA   NA
 7661459 7661460 JALI_0491 JALI_0501     FALSE 0.289 104.000 0.400 NA   NA
 7661460 7661461 JALI_0501 JALI_0511   hemN FALSE 0.254 54.000 0.002 NA   NA
 7661461 7661462 JALI_0511 JALI_0521 hemN   TRUE 0.685 -10.000 0.008 NA   NA
 7661463 7661464 JALI_0531 JALI_0541 sucA sucB TRUE 0.990 4.000 0.667 1.000 Y NA
 7661465 7661466 JALI_0551 JALI_0561   gcpE TRUE 0.839 9.000 0.009 NA   NA
 7661466 7661467 JALI_0561 JALI_0571 gcpE   FALSE 0.019 152.000 0.000 NA   NA
 7661467 7661468 JALI_0571 JALI_0581   fer FALSE 0.043 80.000 0.000 NA   NA
 7661468 10800758 JALI_0581 JALI_t22 fer   FALSE 0.170 39.000 0.000 NA   NA
 7661469 7661470 JALI_0591 JALI_0601 flhA fliA FALSE 0.351 108.000 0.025 1.000 N NA
 7661470 7661471 JALI_0601 JALI_0611 fliA tyrS FALSE 0.238 159.000 0.008 1.000 N NA
 7661471 7661472 JALI_0611 JALI_0621 tyrS gnd TRUE 0.938 10.000 0.014 1.000 N NA
 7661473 7661474 JALI_0631 JALI_0641 lepA   FALSE 0.164 186.000 0.002 1.000 N NA
 7661474 7661475 JALI_0641 JALI_0651     FALSE 0.021 351.000 0.000 NA   NA
 7661476 7661477 JALI_0661 JALI_0671     TRUE 0.984 -7.000 0.898 1.000 Y NA
 7661477 7661478 JALI_0671 JALI_0681     FALSE 0.392 1.000 0.000 NA   NA
 7661478 7661479 JALI_0681 JALI_0691     FALSE 0.259 -10.000 0.000 NA   NA
 7661479 7661480 JALI_0691 JALI_0701   dxr TRUE 0.877 27.000 0.008 1.000 N NA
 7661480 7661481 JALI_0701 JALI_0711 dxr   FALSE 0.293 196.000 0.568 1.000   NA
 7661482 7661483 JALI_0721 JALI_0731   recF FALSE 0.082 158.000 0.006 NA   NA
 7661483 7661484 JALI_0731 JALI_0741 recF dnaN TRUE 0.986 0.000 0.318 1.000 Y NA
 7661486 7661487 JALI_0761 JALI_0771 apbE folD TRUE 0.953 -30.000 0.025 1.000 Y NA
 7661487 7661488 JALI_0771 JALI_0781 folD   FALSE 0.110 118.000 0.007 NA   NA
 7661489 7661490 JALI_0791 JALI_0801 ltuB   FALSE 0.224 33.000 0.000 NA   NA
 7661490 7661491 JALI_0801 JALI_0811     TRUE 0.444 10.000 0.000 NA   NA
 7661491 7661492 JALI_0811 JALI_0821     TRUE 0.922 -3.000 1.000 NA   NA
 7661493 7661494 JALI_0831 JALI_0841     FALSE 0.243 170.000 0.038 NA N NA
 7661494 7661495 JALI_0841 JALI_0851   rpmB FALSE 0.155 126.000 0.005 NA N NA
 7661495 7661496 JALI_0851 JALI_0861 rpmB malQ FALSE 0.187 149.000 0.005 1.000 N NA
 7661496 7661497 JALI_0861 JALI_0871 malQ scc1 TRUE 0.943 4.000 0.600 1.000   NA
 7661497 7661498 JALI_0871 JALI_0881 scc1 lcrE TRUE 0.881 38.000 0.240 0.011   NA
 7661498 7661499 JALI_0881 JALI_0891 lcrE lcrD TRUE 0.923 18.000 0.188 1.000   NA
 7661499 7661500 JALI_0891 JALI_0901 lcrD sctU TRUE 0.990 0.000 0.219 0.017 Y NA
 7661502 7661503 JALI_0921 JALI_0931 ribF truB TRUE 0.870 -43.000 0.308 1.000 N NA
 7661503 7661504 JALI_0931 JALI_0941 truB rbfA TRUE 0.956 38.000 0.111 1.000 Y NA
 7661504 7661505 JALI_0941 JALI_0951 rbfA infA TRUE 0.990 8.000 0.530 1.000 Y NA
 7661505 7661506 JALI_0951 JALI_0961 infA nusA TRUE 0.874 -43.000 0.342 1.000 N NA
 7661506 7661507 JALI_0961 JALI_0971 nusA rpsA FALSE 0.330 118.000 0.006 0.056 N NA
 7661508 7661509 JALI_0981 JALI_0991 trxB acpS TRUE 0.928 6.000 0.008 1.000 N NA
 7661511 7661512 JALI_1011 JALI_1021     TRUE 0.723 35.000 0.009 1.000   NA
 7661516 7661517 JALI_1061 JALI_1071     FALSE 0.249 54.000 0.002 NA   NA
 7661518 7661519 JALI_1081 JALI_1091   hsp60_1 FALSE 0.239 128.000 0.400 NA   NA
 7661519 7661520 JALI_1091 JALI_1101 hsp60_1 groES TRUE 0.963 38.000 0.412 1.000 Y NA
 7661520 7661521 JALI_1101 JALI_1111 groES pepF FALSE 0.332 172.000 0.188 1.000 N NA
 7661522 7661523 JALI_1121 JALI_1131 clpB   TRUE 0.818 26.000 0.009 1.000   NA
 7661523 7661524 JALI_1131 JALI_1141   incD FALSE 0.018 186.000 0.000 NA   NA
 7661524 7661525 JALI_1141 JALI_1151 incD incE TRUE 0.487 82.000 1.000 NA   NA
 7661525 7661526 JALI_1151 JALI_1161 incE incF TRUE 0.945 5.000 1.000 NA   NA
 7661526 7661527 JALI_1161 JALI_1171 incF incG TRUE 0.458 87.000 1.000 NA   NA
 7661528 7661529 JALI_1181 JALI_1191 incA   FALSE 0.021 127.000 0.000 NA   NA
 7661530 7661531 JALI_1201 JALI_1211 araD efp TRUE 0.822 -13.000 0.007 1.000 N NA
 7661531 7661532 JALI_1211 JALI_1221 efp accB TRUE 0.954 13.000 0.120 1.000 N NA
 7661532 7661533 JALI_1221 JALI_1231 accB accC TRUE 0.990 4.000 0.011 0.003 Y NA
 7661533 7661534 JALI_1231 JALI_1241 accC rplM FALSE 0.127 223.000 0.000 1.000 N NA
 7661534 7661535 JALI_1241 JALI_1251 rplM rpsI TRUE 0.989 26.000 0.601 0.058 Y NA
 7661536 7661537 JALI_1261 JALI_1271   adk FALSE 0.381 96.000 0.014 1.000 N NA
 7661538 7661539 JALI_1281 JALI_1291     TRUE 0.988 -3.000 1.000 1.000 Y NA
 7661540 7661541 JALI_1301 JALI_1311     TRUE 0.807 -3.000 0.017 NA   NA
 7661541 7661542 JALI_1311 JALI_1321     FALSE 0.351 78.000 0.017 1.000   NA
 7661543 7661544 JALI_1331 JALI_1341     FALSE 0.084 59.000 0.000 NA   NA
 7661544 7661545 JALI_1341 JALI_1351     FALSE 0.033 93.000 0.000 NA   NA
 7661545 7661546 JALI_1351 JALI_1361     TRUE 0.700 19.000 0.004 NA   NA
 7661546 7661547 JALI_1361 JALI_1371     TRUE 0.786 -22.000 0.012 NA N NA
 7661549 7661550 JALI_1391 JALI_1401     FALSE 0.097 184.000 0.008 NA   NA
 7661550 10800759 JALI_1401 JALI_t31     FALSE 0.053 70.000 0.000 NA   NA
 10800759 7661551 JALI_t31 JALI_1411     FALSE 0.020 258.000 0.000 NA   NA
 7661551 7661552 JALI_1411 JALI_1421     TRUE 0.938 2.000 1.000 NA   NA
 7661552 7661553 JALI_1421 JALI_1431     TRUE 0.933 0.000 1.000 NA   NA
 7661553 7661554 JALI_1431 JALI_1441   pkn1 FALSE 0.159 186.000 0.044 NA   NA
 7661554 7661555 JALI_1441 JALI_1451 pkn1 dnlJ TRUE 0.861 11.000 0.006 1.000   NA
 7661555 7661556 JALI_1451 JALI_1461 dnlJ   FALSE 0.131 98.000 0.006 NA   NA
 7661557 7661558 JALI_1471 JALI_1481 mhpA   FALSE 0.284 200.000 0.857 NA   NA
 7661559 7661560 JALI_1491 JALI_1501 rpmG   TRUE 0.623 36.000 0.006 1.000   NA
 7661560 7661561 JALI_1501 JALI_1511     TRUE 0.989 5.000 0.545 1.000 Y NA
 7661562 7661563 JALI_1521 JALI_1531     FALSE 0.053 186.000 0.000 1.000   NA
 7661563 7661564 JALI_1531 JALI_1541     FALSE 0.033 93.000 0.000 NA   NA
 7661564 7661565 JALI_1541 JALI_1551     FALSE 0.023 513.000 0.000 NA   NA
 7661565 7661566 JALI_1551 JALI_1561     FALSE 0.021 127.000 0.000 NA   NA
 7661566 7661567 JALI_1561 JALI_1571     FALSE 0.019 226.000 0.000 NA   NA
 7661567 7661568 JALI_1571 JALI_1581     FALSE 0.288 -7.000 0.000 NA   NA
 7661568 7661569 JALI_1581 JALI_1591     FALSE 0.019 148.000 0.000 NA   NA
 7661570 7661571 JALI_1601 JALI_1611     FALSE 0.110 53.000 0.000 NA   NA
 7661571 7661572 JALI_1611 JALI_1612     FALSE 0.021 342.000 0.000 NA   NA
 7661572 7661573 JALI_1612 JALI_1613     FALSE 0.019 237.000 0.000 NA   NA
 7661573 7661574 JALI_1613 JALI_1614     TRUE 0.425 4.000 0.000 NA   NA
 7661574 7661575 JALI_1614 JALI_1615     FALSE 0.235 32.000 0.000 NA   NA
 7661575 7661576 JALI_1615 JALI_1616     FALSE 0.248 -12.000 0.000 NA   NA
 7661576 7661577 JALI_1616 JALI_1621     TRUE 0.444 9.000 0.000 NA   NA
 7661577 7661578 JALI_1621 JALI_1631   trpR FALSE 0.100 55.000 0.000 NA   NA
 7661578 7661579 JALI_1631 JALI_1641 trpR trpB FALSE 0.140 349.000 0.000 1.000 N NA
 7661579 7661580 JALI_1641 JALI_1651 trpB trpA FALSE 0.288 -7.000 0.000 NA   NA
 7661581 7661582 JALI_1661 JALI_1671     FALSE 0.080 61.000 0.000 NA   NA
 7661582 7661583 JALI_1671 JALI_1672     FALSE 0.059 68.000 0.000 NA   NA
 7661583 7661584 JALI_1672 JALI_1681     FALSE 0.036 87.000 0.000 NA   NA
 7661586 7661587 JALI_1701 JALI_1711 dsbB dsbG TRUE 0.979 -3.000 0.308 NA Y NA
 7661589 7661590 JALI_1731 JALI_1741     FALSE 0.183 144.000 0.111 NA   NA
 7661590 10800760 JALI_1741 JALI_t33     FALSE 0.170 39.000 0.000 NA   NA
 10800760 7661591 JALI_t33 JALI_1751     FALSE 0.019 196.000 0.000 NA   NA
 7661592 7661593 JALI_1761 JALI_1771 kdsB pyrG TRUE 0.839 -24.000 0.018 1.000 N NA
 7661593 7661594 JALI_1771 JALI_1781 pyrG   TRUE 0.813 -13.000 0.006 1.000 N NA
 7661594 7661595 JALI_1781 JALI_1791   zwf FALSE 0.213 117.000 0.004 1.000 N NA
 7661595 7661596 JALI_1791 JALI_1801 zwf devB TRUE 0.977 25.000 0.021 1.000 Y NA
 7661597 7661598 JALI_1811 JALI_1821 dnaX tdk TRUE 0.959 14.000 0.254 1.000 N NA
 7661598 7661599 JALI_1821 JALI_1831 tdk gyrA TRUE 0.907 2.000 0.007 1.000 N NA
 7661599 7661600 JALI_1831 JALI_1841 gyrA gyrB2 TRUE 0.993 15.000 0.306 0.006 Y NA
 7661600 7661601 JALI_1841 JALI_1851 gyrB2   TRUE 0.864 3.000 0.028 NA   NA
 7661601 7661602 JALI_1851 JALI_1861     FALSE 0.019 146.000 0.000 NA   NA
 7661602 7661603 JALI_1861 JALI_1871   tgt FALSE 0.027 104.000 0.000 NA   NA
 7661603 7661604 JALI_1871 JALI_1881 tgt mgtE FALSE 0.194 127.000 0.003 1.000 N NA
 7661604 7661605 JALI_1881 JALI_1891 mgtE   FALSE 0.022 439.000 0.000 NA   NA
 7661606 7661607 JALI_1901 JALI_1911   gcp FALSE 0.123 76.000 0.002 NA   NA
 7661607 7661608 JALI_1911 JALI_1921 gcp oppA3 TRUE 0.746 -36.000 0.006 1.000 N NA
 7661608 7661609 JALI_1921 JALI_1931 oppA3 oppB TRUE 0.743 159.000 0.091 0.023 Y NA
 7661609 7661610 JALI_1931 JALI_1941 oppB oppC TRUE 0.981 32.000 0.273 0.023 Y NA
 7661610 7661611 JALI_1941 JALI_1951 oppC oppD TRUE 0.973 -7.000 0.044 1.000 Y NA
 7661611 7661612 JALI_1951 JALI_1961 oppD oppF TRUE 0.991 15.000 0.044 0.020 Y NA
 7661612 7661613 JALI_1961 JALI_1971 oppF   FALSE 0.021 313.000 0.000 NA   NA
 7661613 7661614 JALI_1971 JALI_1981     TRUE 0.810 30.000 0.217 NA   NA
 7661614 7661615 JALI_1981 JALI_1991   pfkA TRUE 0.945 20.000 0.088 1.000 N NA
 7661615 7661616 JALI_1991 JALI_2001 pfkA   TRUE 0.925 9.000 0.088 1.000   NA
 7661616 7661617 JALI_2001 JALI_2011   pfkA_2 TRUE 0.886 -18.000 0.857 1.000   NA
 10800761 7661618 JALI_t35 JALI_2021   gseA FALSE 0.023 117.000 0.000 NA   NA
 7661618 7661619 JALI_2021 JALI_2031 gseA leuS TRUE 0.867 -3.000 0.006 1.000 N NA
 7661621 7661622 JALI_2051 JALI_2061     TRUE 0.839 19.000 0.012 NA   NA
 7661622 7661623 JALI_2061 JALI_2071   rpiA TRUE 0.705 -10.000 0.011 NA   NA
 7661623 7661624 JALI_2071 JALI_2081 rpiA   FALSE 0.090 95.000 0.003 NA   NA
 7661625 7661626 JALI_2091 JALI_2101 dhnA xasA TRUE 0.973 14.000 1.000 1.000 N NA
 7661626 7661627 JALI_2101 JALI_2111 xasA   TRUE 0.418 94.000 0.250 NA N NA
 7661627 7661628 JALI_2111 JALI_2121   surE FALSE 0.142 131.000 0.015 NA   NA
 7661628 7661629 JALI_2121 JALI_2131 surE ubiA FALSE 0.143 112.000 0.006 1.000   NA
 7661629 7661630 JALI_2131 JALI_2141 ubiA   TRUE 0.978 -3.000 0.029 1.000 Y NA
 7661631 10800762 JALI_2151 JALI_t37     FALSE 0.396 21.000 0.000 NA   NA
 10800762 7661632 JALI_t37 JALI_2161     FALSE 0.018 191.000 0.000 NA   NA
 7661632 7661633 JALI_2161 JALI_2171     FALSE 0.300 27.000 0.000 NA   NA
 7661633 7661634 JALI_2171 JALI_2181     FALSE 0.019 142.000 0.000 NA   NA
 7661634 7661635 JALI_2181 JALI_2191     FALSE 0.022 391.000 0.000 NA   NA
 7661635 7661636 JALI_2191 JALI_2201     FALSE 0.034 91.000 0.000 NA   NA
 7661636 7661637 JALI_2201 JALI_2211     FALSE 0.029 99.000 0.000 NA   NA
 7661637 7661638 JALI_2211 JALI_2221     FALSE 0.305 149.000 1.000 NA   NA
 7661638 7661639 JALI_2221 JALI_2231     FALSE 0.020 271.000 0.000 NA   NA
 7661639 7661640 JALI_2231 JALI_2241     FALSE 0.019 150.000 0.000 NA   NA
 7661641 7661642 JALI_2251 JALI_2261     FALSE 0.251 183.000 0.273 1.000   NA
 7661642 7661643 JALI_2261 JALI_2271   incB FALSE 0.263 105.000 0.273 NA   NA
 7661643 7661644 JALI_2271 JALI_2281 incB incC TRUE 0.523 77.000 1.000 NA   NA
 7661644 7661645 JALI_2281 JALI_2291 incC   TRUE 0.634 58.000 0.667 NA   NA
 7661645 7661646 JALI_2291 JALI_2301     TRUE 0.811 29.000 0.182 NA   NA
 7661647 7661648 JALI_2311 JALI_2321 acpP fabG TRUE 0.693 369.000 0.007 0.014 Y NA
 7661648 7661649 JALI_2321 JALI_2331 fabG fabD TRUE 0.986 -3.000 0.019 0.014 Y NA
 7661649 7661650 JALI_2331 JALI_2341 fabD fabH TRUE 0.988 17.000 0.009 0.014 Y NA
 7661651 7661652 JALI_2351 JALI_2361 recR   FALSE 0.198 375.000 0.003 1.000 N NA
 7661652 7661653 JALI_2361 JALI_2371   ompH TRUE 0.854 69.000 0.175 1.000 Y NA
 7661653 7661654 JALI_2371 JALI_2381 ompH lpxD TRUE 0.969 28.000 0.018 1.000 Y NA
 7661656 7661657 JALI_2401 JALI_2411 pdhA pdhB TRUE 0.988 -7.000 0.456 0.003 Y NA
 7661657 7661658 JALI_2411 JALI_2421 pdhB pdhC TRUE 0.988 5.000 0.254 1.000 Y NA
 7661661 7661662 JALI_2451 JALI_2461 dnaA oxaA TRUE 0.649 77.000 0.714 1.000 N NA
 7661662 7661663 JALI_2461 JALI_2471 oxaA lgt FALSE 0.228 310.000 0.006 1.000 N NA
 7661664 7661665 JALI_2481 JALI_2491     TRUE 0.921 4.000 0.500 NA   NA
 7661667 7661668 JALI_2511 JALI_2521     TRUE 0.849 -10.000 0.545 NA   NA
 7661669 7661670 JALI_2531 JALI_2541     TRUE 0.947 6.000 0.041 1.000 N NA
 7661671 7661672 JALI_2551 JALI_2561   dnaQ TRUE 0.891 9.000 0.050 NA   NA
 7661672 7661673 JALI_2561 JALI_2571 dnaQ   TRUE 0.829 -3.000 0.031 NA   NA
 7661673 7661674 JALI_2571 JALI_2581     TRUE 0.770 -7.000 0.019 NA   NA
 7661675 7661676 JALI_2591 JALI_2601   accA TRUE 0.803 -34.000 0.010 1.000 N NA
 7661676 7661677 JALI_2601 JALI_2611 accA   FALSE 0.113 133.000 0.008 NA   NA
 7661677 7661678 JALI_2611 JALI_2621   ihfA FALSE 0.219 117.000 0.182 NA   NA
 7661678 7661679 JALI_2621 JALI_2631 ihfA amiA FALSE 0.126 220.000 0.000 1.000 N NA
 7661679 7661680 JALI_2631 JALI_2641 amiA murE TRUE 0.940 -85.000 0.014 1.000 Y NA
 7661680 7661681 JALI_2641 JALI_2651 murE pbp TRUE 0.635 323.000 0.022 1.000 Y NA
 7661681 7661682 JALI_2651 JALI_2661 pbp   TRUE 0.786 -13.000 0.135 NA   NA
 7661682 7661683 JALI_2661 JALI_2671   mraW TRUE 0.769 0.000 0.007 NA   NA
 7661684 7661685 JALI_2681 JALI_2691     TRUE 0.913 7.000 0.286 NA   NA
 7661685 7661686 JALI_2691 JALI_2701   dnaA2 FALSE 0.056 243.000 0.000 1.000   NA
 7661686 7661687 JALI_2701 JALI_2711 dnaA2   TRUE 0.663 39.000 0.006 NA N NA
 7661689 7661690 JALI_2731 JALI_2741 nqrB nqrC TRUE 0.992 4.000 0.093 0.003 Y NA
 7661690 7661691 JALI_2741 JALI_2751 nqrC nqrD TRUE 0.981 -10.000 0.034 0.008 Y NA
 7661691 7661692 JALI_2751 JALI_2761 nqrD nqrE TRUE 0.991 6.000 0.034 0.008 Y NA
 7661693 7661694 JALI_2771 JALI_2781 gcsH   TRUE 0.934 20.000 0.857 NA   NA
 7661694 7661695 JALI_2781 JALI_2791     FALSE 0.149 195.000 0.032 NA   NA
 7661695 7661696 JALI_2791 JALI_2801   lplA TRUE 0.944 6.000 0.032 1.000 N NA
 7661700 7661701 JALI_2841 JALI_2851     TRUE 0.550 58.000 0.231 NA   NA
 7661701 7661702 JALI_2851 JALI_2861   ptsN_2 TRUE 0.992 3.000 0.231 0.003 Y NA
 7661702 7661703 JALI_2861 JALI_2871 ptsN_2 dut TRUE 0.917 2.000 0.008 1.000 N NA
 7661703 7661704 JALI_2871 JALI_2881 dut accD TRUE 0.800 37.000 0.008 1.000 N NA
 7661704 7661705 JALI_2881 JALI_2891 accD sodM TRUE 0.469 72.000 0.009 1.000 N NA
 7661705 7661706 JALI_2891 JALI_2901 sodM mrsA FALSE 0.337 132.000 0.067 1.000 N NA
 7661706 7661707 JALI_2901 JALI_2911 mrsA   FALSE 0.144 152.000 0.022 NA   NA
 7661708 7661709 JALI_2921 JALI_2931 rnc radA TRUE 0.821 -16.000 0.007 1.000 N NA
 7661709 7661710 JALI_2931 JALI_2941 radA hemC TRUE 0.707 44.000 0.007 1.000 N NA
 7661710 7661711 JALI_2941 JALI_2951 hemC   FALSE 0.022 393.000 0.000 NA   NA
 7661712 7661713 JALI_2961 JALI_2971 pknD valS TRUE 0.916 15.000 0.006 1.000 N NA
 7661713 7661714 JALI_2971 JALI_2981 valS   FALSE 0.091 127.000 0.006 NA   NA
 7661714 7661715 JALI_2981 JALI_2991   atpK TRUE 0.655 -79.000 0.030 NA   NA
 7661715 7661716 JALI_2991 JALI_3001 atpK atpI TRUE 0.786 63.000 0.848 0.011   NA
 7661716 7661717 JALI_3001 JALI_3011 atpI atpD TRUE 0.993 6.000 0.270 0.011 Y NA
 7661717 7661718 JALI_3011 JALI_3021 atpD atpB TRUE 0.987 -15.000 0.903 0.011 Y NA
 7661718 7661719 JALI_3021 JALI_3031 atpB atpA TRUE 0.994 3.000 0.806 0.011 Y NA
 7661719 7661720 JALI_3031 JALI_3041 atpA   TRUE 0.882 -6.000 0.633 NA   NA
 7661720 7661721 JALI_3041 JALI_3051   atpE FALSE 0.251 167.000 0.667 NA   NA
 7661723 7661724 JALI_3071 JALI_3081   tal TRUE 0.723 45.000 0.667 NA   NA
 7661724 7661725 JALI_3081 JALI_3091 tal rpoC FALSE 0.246 112.000 0.006 1.000 N NA
 7661725 7661726 JALI_3091 JALI_3101 rpoC rpoB TRUE 0.993 25.000 0.851 0.003 Y NA
 7661726 7661727 JALI_3101 JALI_3111 rpoB rplL FALSE 0.376 361.000 0.223 1.000 N NA
 7661727 7661728 JALI_3111 JALI_3121 rplL rplJ TRUE 0.986 32.000 0.884 0.051 Y NA
 7661728 7661729 JALI_3121 JALI_3131 rplJ rplA TRUE 0.990 22.000 0.302 0.070 Y NA
 7661729 7661730 JALI_3131 JALI_3141 rplA rplK TRUE 0.992 23.000 0.838 0.070 Y NA
 7661730 7661731 JALI_3141 JALI_3151 rplK nusG TRUE 0.498 106.000 0.681 1.000 N NA
 7661731 7661732 JALI_3151 JALI_3161 nusG secE TRUE 0.968 4.000 0.843 1.000 N NA
 7661732 10800763 JALI_3161 JALI_t02 secE   FALSE 0.249 31.000 0.000 NA   NA
 10800763 7661733 JALI_t02 JALI_3171   tufA FALSE 0.163 40.000 0.000 NA   NA
 7661733 10800764 JALI_3171 JALI_t03 tufA   FALSE 0.120 47.000 0.000 NA   NA
 10800764 7661734 JALI_t03 JALI_3181   infA2 FALSE 0.019 230.000 0.000 NA   NA
 7661735 7661736 JALI_3191 JALI_3201     TRUE 0.845 -3.000 0.054 NA   NA
 7661737 7661738 JALI_3211 JALI_3221     FALSE 0.018 190.000 0.000 NA   NA
 7661740 7661741 JALI_3241 JALI_3251 tpiS xseA TRUE 0.926 14.000 0.007 1.000 N NA
 7661741 7661742 JALI_3251 JALI_3261 xseA xseB TRUE 0.924 -16.000 0.412 0.003   NA
 7661742 7661743 JALI_3261 JALI_3271 xseB   TRUE 0.805 7.000 0.007 NA   NA
 7661743 7661744 JALI_3271 JALI_3281   dxs TRUE 0.787 -3.000 0.011 NA   NA
 7661744 7661745 JALI_3281 JALI_3291 dxs pykF FALSE 0.262 97.000 0.004 1.000 N NA
 7661745 7661746 JALI_3291 JALI_3301 pykF uvrA TRUE 0.860 23.000 0.002 1.000 N NA
 7661746 7661747 JALI_3301 JALI_3311 uvrA dnaX TRUE 0.436 218.000 0.000 1.000 Y NA
 7661747 7661748 JALI_3311 JALI_3321 dnaX   TRUE 0.857 -7.000 0.411 NA   NA
 7661749 7661750 JALI_3331 JALI_3341 ptsI ptsH TRUE 0.989 0.000 0.026 0.005 Y NA
 7661750 7661751 JALI_3341 JALI_3351 ptsH   FALSE 0.131 137.000 0.013 NA   NA
 7661751 7661752 JALI_3351 JALI_3361     FALSE 0.094 57.000 0.000 NA   NA
 7661754 7661755 JALI_3381 JALI_3391   dnaJ TRUE 0.890 35.000 0.300 1.000 N NA
 7661755 7661756 JALI_3391 JALI_3401 dnaJ rpsU TRUE 0.879 29.000 0.412 1.000   NA
 7661756 7661757 JALI_3401 JALI_3411 rpsU   FALSE 0.123 197.000 0.006 1.000   NA
 7661758 7661759 JALI_3421 JALI_3431 lon   FALSE 0.172 102.000 0.012 NA   NA
 7661759 7661760 JALI_3431 JALI_3441     FALSE 0.021 350.000 0.000 NA   NA
 7661760 7661761 JALI_3441 JALI_3451   xerC FALSE 0.313 62.000 0.004 1.000   NA
 7661761 7661762 JALI_3451 JALI_3461 xerC   TRUE 0.535 54.000 0.010 1.000   NA
 7661762 7661763 JALI_3461 JALI_3471     TRUE 0.678 36.000 0.017 NA   NA
 7661763 7661764 JALI_3471 JALI_3481     TRUE 0.807 -18.000 0.017 NA N NA
 7661764 7661765 JALI_3481 JALI_3491     TRUE 0.926 7.000 0.500 NA   NA
 7661766 7661767 JALI_3501 JALI_3511 secG def FALSE 0.169 156.000 0.002 1.000 N NA
 7661767 7661768 JALI_3511 JALI_3521 def ksgA TRUE 0.453 274.000 0.000 1.000 Y NA
 7661768 7661769 JALI_3521 JALI_3531 ksgA   TRUE 0.824 16.000 0.005 1.000   NA
 7661769 7661770 JALI_3531 JALI_3541     FALSE 0.332 305.000 0.667 1.000   NA
 10800766 7661771 JALI_t05 JALI_3551     FALSE 0.019 155.000 0.000 NA   NA
 7661771 7661772 JALI_3551 JALI_3561     TRUE 0.915 26.000 1.000 NA   NA
 7661773 7661774 JALI_3571 JALI_3581     FALSE 0.020 252.000 0.000 NA   NA
 7661774 7661775 JALI_3581 JALI_3591   dapA FALSE 0.127 162.000 0.014 NA   NA
 7661775 7661776 JALI_3591 JALI_3601 dapA lysC TRUE 0.985 10.000 0.021 1.000 Y NA
 7661776 7661777 JALI_3601 JALI_3611 lysC asd TRUE 0.971 -7.000 0.022 1.000 Y NA
 7661777 7661778 JALI_3611 JALI_3621 asd dapB TRUE 0.984 10.000 0.005 0.066 Y NA
 7661778 7661779 JALI_3621 JALI_3631 dapB   FALSE 0.018 177.000 0.000 NA   NA
 7661780 7661781 JALI_3641 JALI_3651 aroA aroL TRUE 0.924 -58.000 0.006 1.000 Y NA
 7661781 7661782 JALI_3651 JALI_3661 aroL aroC TRUE 0.957 -7.000 0.006 1.000 Y NA
 7661782 7661783 JALI_3661 JALI_3671 aroC aroB TRUE 0.989 -3.000 0.110 0.005 Y NA
 7661783 7661784 JALI_3671 JALI_3681 aroB aroE TRUE 0.969 -19.000 0.007 0.005 Y NA
 7661784 7661785 JALI_3681 JALI_3691 aroE   TRUE 0.691 42.000 0.214 NA   NA
 7661785 7661786 JALI_3691 JALI_3701     FALSE 0.211 141.000 0.300 NA   NA
 7661786 7661787 JALI_3701 JALI_3711     TRUE 0.545 69.000 0.429 1.000   NA
 7661787 7661788 JALI_3711 JALI_3721     TRUE 0.434 16.000 0.000 NA   NA
 7661788 7661789 JALI_3721 JALI_3731     FALSE 0.018 172.000 0.000 NA   NA
 7661790 7661791 JALI_3741 JALI_3751 mdhC ltuA FALSE 0.107 191.000 0.009 NA   NA
 7661791 7661792 JALI_3751 JALI_3761 ltuA pgi FALSE 0.217 115.000 0.133 NA   NA
 7661792 7661793 JALI_3761 JALI_3771 pgi   FALSE 0.115 113.000 0.002 1.000   NA
 7661793 7661794 JALI_3771 JALI_3781   phnP TRUE 0.881 13.000 0.008 1.000   NA
 7661794 7661795 JALI_3781 JALI_3791 phnP artJ TRUE 0.693 29.000 0.005 1.000   NA
 7661795 7661796 JALI_3791 JALI_3801 artJ aroG TRUE 0.855 69.000 0.200 1.000 Y NA
 7661796 7661797 JALI_3801 JALI_3811 aroG   FALSE 0.020 137.000 0.000 NA   NA
 7661799 7661800 JALI_3831 JALI_3841     TRUE 0.705 15.000 0.000 1.000   NA
 7661800 7661801 JALI_3841 JALI_3851     TRUE 0.788 -3.000 0.011 NA   NA
 7661804 7661805 JALI_3881 JALI_3891   dapL FALSE 0.157 108.000 0.012 NA   NA
 7661805 7661806 JALI_3891 JALI_3901 dapL   TRUE 0.885 8.000 0.037 NA   NA
 7661808 7661809 JALI_3921 JALI_3931 proS   TRUE 0.475 69.000 0.007 1.000 N NA
 7661809 7661810 JALI_3931 JALI_3941   grpE TRUE 0.938 -3.000 0.286 1.000 N NA
 7661810 7661811 JALI_3941 JALI_3951 grpE dnaK TRUE 0.988 26.000 0.224 0.010 Y NA
 7661811 7661812 JALI_3951 JALI_3961 dnaK vacB FALSE 0.188 293.000 0.003 1.000 N NA
 7661812 7661813 JALI_3961 JALI_3971 vacB   FALSE 0.020 256.000 0.000 NA   NA
 7661814 7661815 JALI_3981 JALI_3991   sucB TRUE 0.928 32.000 0.857 1.000 N NA
 7661815 7661816 JALI_3991 JALI_4001 sucB gltT TRUE 0.729 246.000 0.714 1.000 Y NA
 7661816 7661817 JALI_4001 JALI_4011 gltT   TRUE 0.907 -3.000 0.013 1.000 N NA
 7661817 7661818 JALI_4011 JALI_4021     FALSE 0.187 166.000 0.006 1.000 N NA
 7661818 7661819 JALI_4021 JALI_4031     TRUE 0.801 -12.000 0.213 NA   NA
 7661819 7661820 JALI_4031 JALI_4041   ribC TRUE 0.718 -3.000 0.006 NA   NA
 7661821 7661822 JALI_4051 JALI_4061   dksA TRUE 0.909 15.000 0.009 NA N NA
 7661822 7661823 JALI_4061 JALI_4071 dksA lspA TRUE 0.946 6.000 0.038 1.000 N NA
 7661823 7661824 JALI_4071 JALI_4081 lspA   TRUE 0.512 102.000 0.038 0.059 N NA
 7661824 7661825 JALI_4081 JALI_4091   pcnB FALSE 0.126 216.000 0.000 1.000 N NA
 7661825 7661826 JALI_4091 JALI_4101 pcnB lpxB TRUE 0.603 61.000 0.010 1.000 N NA
 7661826 7661827 JALI_4101 JALI_4111 lpxB pmpA FALSE 0.072 107.000 0.000 1.000   NA
 7661827 7661828 JALI_4111 JALI_4121 pmpA pmpB FALSE 0.156 139.000 0.000 0.015   NA
 7661828 7661829 JALI_4121 JALI_4131 pmpB pmpC TRUE 0.488 176.000 1.000 0.015   NA
 7661830 7661831 JALI_4141 JALI_4151     TRUE 0.984 -3.000 0.509 1.000 Y NA
 7661831 7661832 JALI_4151 JALI_4161     TRUE 0.979 -9.000 0.616 1.000 Y NA
 7661833 7661834 JALI_4171 JALI_4181   rpmA FALSE 0.412 90.000 0.335 1.000   NA
 7661834 7661835 JALI_4181 JALI_4191 rpmA rplU TRUE 0.985 31.000 0.667 0.049 Y NA
 7661835 10800768 JALI_4191 JALI_t07 rplU   FALSE 0.021 318.000 0.000 NA   NA
 7661836 7661837 JALI_4201 JALI_4211     FALSE 0.141 184.000 0.024 NA   NA
 7661837 7661838 JALI_4211 JALI_4221     TRUE 0.930 17.000 0.667 NA   NA
 7661838 7661839 JALI_4221 JALI_4231     TRUE 0.783 13.000 0.006 NA   NA
 7661839 7661840 JALI_4231 JALI_4241     FALSE 0.204 133.000 0.222 NA   NA
 7661840 7661841 JALI_4241 JALI_4251   rsbV FALSE 0.066 189.000 0.006 NA   NA
 7661841 7661842 JALI_4251 JALI_4261 rsbV   FALSE 0.200 178.000 0.286 NA   NA
 7661842 7661843 JALI_4261 JALI_4271     FALSE 0.116 197.000 0.011 NA   NA
 7661843 7661844 JALI_4271 JALI_4281     TRUE 0.755 -27.000 0.205 NA   NA
 7661844 7661845 JALI_4281 JALI_4291   ubiE TRUE 0.554 -64.000 0.008 NA   NA
 7661846 7661847 JALI_4301 JALI_4311   dapF FALSE 0.335 61.000 0.008 NA   NA
 7661847 7661848 JALI_4311 JALI_4321 dapF clpP TRUE 0.747 -31.000 0.006 1.000 N NA
 7661848 7661849 JALI_4321 JALI_4331 clpP glyA TRUE 0.950 12.000 0.051 1.000 N NA
 7661850 7661851 JALI_4341 JALI_4351   ispF FALSE 0.240 103.000 0.003 1.000 N NA
 7661852 7661853 JALI_4361 JALI_4371   rpsJ TRUE 0.910 8.000 0.006 1.000 N NA
 7661853 7661854 JALI_4371 JALI_4381 rpsJ fusA TRUE 0.980 8.000 0.007 1.000 Y NA
 7661854 7661855 JALI_4381 JALI_4391 fusA rpsG TRUE 0.924 42.000 0.008 1.000 Y NA
 7661855 7661856 JALI_4391 JALI_4401 rpsG rpsL TRUE 0.949 50.000 0.029 0.010 Y NA
 7661857 7661858 JALI_4411 JALI_4421   tsp FALSE 0.194 158.000 0.025 1.000   NA
 7661859 7661860 JALI_4431 JALI_4441 crpA omcB FALSE 0.236 178.000 0.200 1.000   NA
 7661860 7661861 JALI_4441 JALI_4451 omcB omcA TRUE 0.468 147.000 0.600 0.003   NA
 7661863 7661864 JALI_4471 JALI_4481 gltX euo FALSE 0.058 272.000 0.000 1.000   NA
 7661864 7661865 JALI_4481 JALI_4491 euo recJ FALSE 0.063 405.000 0.000 1.000   NA
 7661865 7661866 JALI_4491 JALI_4501 recJ secF FALSE 0.166 118.000 0.007 1.000   NA
 7661866 7661867 JALI_4501 JALI_4511 secF   FALSE 0.022 420.000 0.000 NA   NA
 7661868 7661869 JALI_4521 JALI_4531 uppS cdsA TRUE 0.989 6.000 0.400 1.000 Y NA
 7661869 7661870 JALI_4531 JALI_4541 cdsA cmk TRUE 0.895 -3.000 0.008 1.000 N NA
 7661870 7661871 JALI_4541 JALI_4551 cmk plsC TRUE 0.895 -3.000 0.008 1.000 N NA
 7661871 7661872 JALI_4551 JALI_4561 plsC argS TRUE 0.911 15.000 0.006 1.000 N NA
 7661875 7661876 JALI_4591 JALI_4601     FALSE 0.051 185.000 0.002 NA   NA
 7661876 7661877 JALI_4601 JALI_4611   prfB TRUE 0.969 -3.000 0.006 1.000 Y NA
 7661878 7661879 JALI_4621 JALI_4631     TRUE 0.645 58.000 0.316 1.000   NA
 7661879 7661880 JALI_4631 JALI_4641   ispD TRUE 0.777 -10.000 0.010 1.000   NA
 7661880 7661881 JALI_4641 JALI_4651 ispD truA TRUE 0.924 9.000 0.007 1.000 N NA
 7661883 10800769 JALI_4671 JALI_t08     FALSE 0.021 131.000 0.000 NA   NA
 10800769 7661884 JALI_t08 JALI_4681     FALSE 0.042 81.000 0.000 NA   NA
 7661884 7661885 JALI_4681 JALI_4691   atoS TRUE 0.737 -22.000 0.057 NA   NA
 7661885 7661886 JALI_4691 JALI_4701 atoS atoC TRUE 0.956 43.000 0.019 0.018 Y NA
 7661886 10800770 JALI_4701 JALI_t09 atoC   FALSE 0.059 68.000 0.000 NA   NA
 10800770 7661887 JALI_t09 JALI_4711     FALSE 0.037 86.000 0.000 NA   NA
 7661887 7661888 JALI_4711 JALI_4721   recO TRUE 0.549 -30.000 0.007 NA   NA
 7661889 10800771 JALI_4731 JALI_t10     FALSE 0.020 132.000 0.000 NA   NA
 7661890 7661891 JALI_4741 JALI_4751     TRUE 0.809 6.000 0.007 NA   NA
 7661893 7661894 JALI_4771 JALI_4781 pheT   TRUE 0.708 -3.000 0.006 NA   NA
 7661894 7661895 JALI_4781 JALI_4791     TRUE 0.874 19.000 0.038 NA   NA
 7661896 7661897 JALI_4801 JALI_4811 oppC2 oppB2 TRUE 0.992 2.000 0.400 0.020 Y NA
 7661897 7661898 JALI_4811 JALI_4821 oppB2 oppA4 TRUE 0.963 45.000 0.318 0.020 Y NA
 7661898 7661899 JALI_4821 JALI_4831 oppA4   FALSE 0.149 608.000 0.000 1.000 N NA
 7661899 7661900 JALI_4831 JALI_4841     FALSE 0.259 162.000 0.714 NA   NA
 7661902 7661903 JALI_4861 JALI_4871   hemZ FALSE 0.054 157.000 0.000 1.000   NA
 7661903 7661904 JALI_4871 JALI_4881 hemZ fliY TRUE 0.918 22.000 0.011 1.000 N NA
 7661904 7661905 JALI_4881 JALI_4891 fliY   TRUE 0.627 46.000 0.005 1.000 N NA
 7661905 7661906 JALI_4891 JALI_4901     TRUE 0.822 -3.000 0.008 1.000   NA
 7661906 7661907 JALI_4901 JALI_4911   glgC FALSE 0.357 89.000 0.070 1.000   NA
 7661909 7661910 JALI_4931 JALI_4941 rho   TRUE 0.907 -3.000 0.013 1.000 N NA
 7661910 7661911 JALI_4941 JALI_4951   polA TRUE 0.914 -6.000 0.068 1.000 N NA
 7661911 7661912 JALI_4951 JALI_4961 polA sohB TRUE 0.907 17.000 0.006 1.000 N NA
 7661912 7661913 JALI_4961 JALI_4971 sohB   FALSE 0.262 139.000 0.011 1.000 N NA
 7661913 7661914 JALI_4971 JALI_4981   pgsA FALSE 0.219 212.000 0.000 0.049 N NA
 7661914 10800772 JALI_4981 JALI_t12 pgsA   FALSE 0.018 183.000 0.000 NA   NA
 10800772 7661915 JALI_t12 JALI_4991     FALSE 0.022 125.000 0.000 NA   NA
 7661916 7661917 JALI_5001 JALI_5011 dnaB gidA FALSE 0.136 294.000 0.000 1.000 N NA
 7661917 7661918 JALI_5011 JALI_5021 gidA lplA TRUE 0.844 -10.000 0.008 1.000 N NA
 7661919 7661920 JALI_5031 JALI_5041 ndk ruvA FALSE 0.200 160.000 0.006 1.000 N NA
 7661920 7661921 JALI_5041 JALI_5051 ruvA ruvC TRUE 0.992 20.000 0.451 0.015 Y NA
 7661921 7661922 JALI_5051 JALI_5061 ruvC   FALSE 0.102 108.000 0.006 NA   NA
 7661922 10800773 JALI_5061 JALI_t13     FALSE 0.037 86.000 0.000 NA   NA
 10800773 7661923 JALI_t13 JALI_5071     FALSE 0.022 119.000 0.000 NA   NA
 7661923 7661924 JALI_5071 JALI_5081   gapA TRUE 0.902 11.000 0.128 NA   NA
 7661924 7661925 JALI_5081 JALI_5091 gapA rplQ TRUE 0.663 44.000 0.006 1.000 N NA
 7661925 7661926 JALI_5091 JALI_5101 rplQ rpoA TRUE 0.971 9.000 0.873 1.000 N NA
 7661926 7661927 JALI_5101 JALI_5111 rpoA rpsK TRUE 0.951 21.000 0.308 1.000 N NA
 7661927 7661928 JALI_5111 JALI_5121 rpsK rpsM TRUE 0.993 22.000 0.810 0.047 Y NA
 7661928 7661929 JALI_5121 JALI_5131 rpsM secY TRUE 0.663 56.000 0.011 1.000 N NA
 7661929 7661930 JALI_5131 JALI_5141 secY rplO TRUE 0.957 23.000 0.730 1.000 N NA
 7661930 7661931 JALI_5141 JALI_5151 rplO rpsE TRUE 0.983 -7.000 0.148 0.064 Y NA
 7661931 7661932 JALI_5151 JALI_5161 rpsE rplR TRUE 0.994 15.000 0.814 0.064 Y NA
 7661932 7661933 JALI_5161 JALI_5171 rplR rplF TRUE 0.993 22.000 0.815 0.047 Y NA
 7661933 7661934 JALI_5171 JALI_5181 rplF rpsH TRUE 0.988 28.000 0.808 0.047 Y NA
 7661934 7661935 JALI_5181 JALI_5191 rpsH rplE TRUE 0.990 18.000 0.059 0.047 Y NA
 7661935 7661936 JALI_5191 JALI_5201 rplE rplX TRUE 0.993 2.000 0.758 0.047 Y NA
 7661936 7661937 JALI_5201 JALI_5211 rplX rplN TRUE 0.994 13.000 0.810 0.064 Y NA
 7661937 7661938 JALI_5211 JALI_5221 rplN rpsQ TRUE 0.993 17.000 0.791 0.064 Y NA
 7661938 7661939 JALI_5221 JALI_5231 rpsQ rpmC TRUE 0.989 -7.000 0.828 0.047 Y NA
 7661939 7661940 JALI_5231 JALI_5241 rpmC rplP TRUE 0.993 2.000 0.802 0.047 Y NA
 7661940 7661941 JALI_5241 JALI_5251 rplP rpsC TRUE 0.983 33.000 0.828 0.064 Y NA
 7661941 7661942 JALI_5251 JALI_5261 rpsC rplV TRUE 0.994 10.000 0.719 0.064 Y NA
 7661942 7661943 JALI_5261 JALI_5271 rplV rpsS TRUE 0.993 19.000 0.769 0.064 Y NA
 7661943 7661944 JALI_5271 JALI_5281 rpsS rplB TRUE 0.994 6.000 0.820 0.064 Y NA
 7661944 7661945 JALI_5281 JALI_5291 rplB rplW TRUE 0.988 24.000 0.849 1.000 Y NA
 7661945 7661946 JALI_5291 JALI_5301 rplW rplD TRUE 0.983 16.000 0.013 1.000 Y NA
 7661946 7661947 JALI_5301 JALI_5311 rplD rplC TRUE 0.990 9.000 0.020 0.047 Y NA
 7661947 7661948 JALI_5311 JALI_5321 rplC   FALSE 0.022 435.000 0.000 NA   NA
 7661948 7661949 JALI_5321 JALI_5331   fmt FALSE 0.069 166.000 0.006 NA   NA
 7661949 7661950 JALI_5331 JALI_5341 fmt lpxA TRUE 0.835 -10.000 0.007 1.000 N NA
 7661950 7661951 JALI_5341 JALI_5351 lpxA fabZ TRUE 0.950 12.000 0.048 1.000 N NA
 7661951 7661952 JALI_5351 JALI_5361 fabZ lpxC TRUE 0.906 -3.000 0.012 1.000 N NA
 7661952 7661953 JALI_5361 JALI_5371 lpxC cutE TRUE 0.686 101.000 0.012 1.000 Y NA
 7661953 7661954 JALI_5371 JALI_5381 cutE   TRUE 0.573 64.000 0.072 NA N NA
 7661954 7661955 JALI_5381 JALI_5391   dnaQ2 FALSE 0.275 136.000 0.072 NA N NA
 7661955 7661956 JALI_5391 JALI_5401 dnaQ2   TRUE 0.791 4.000 0.007 NA   NA
 7661956 7661957 JALI_5401 JALI_5411     TRUE 0.646 -21.000 0.010 NA   NA
 10800774 7661958 JALI_t14 JALI_5421   trxA FALSE 0.018 173.000 0.000 NA   NA
 7661959 7661960 JALI_5431 JALI_5441   mip TRUE 0.852 16.000 0.000 1.000 N NA
 7661960 7661961 JALI_5441 JALI_5451 mip aspS FALSE 0.201 137.000 0.006 1.000 N NA
 7661961 7661962 JALI_5451 JALI_5461 aspS hisS TRUE 0.967 -19.000 0.009 0.062 Y NA
 7661963 7661964 JALI_5471 JALI_5481 uhpC dnaE TRUE 0.923 14.000 0.007 1.000 N NA
 7661966 7661967 JALI_5501 JALI_5511     TRUE 0.908 25.000 0.750 NA   NA
 7661967 7661968 JALI_5511 JALI_5521   rsbW TRUE 0.872 -13.000 0.875 NA   NA
 7661970 7661971 JALI_5541 JALI_5551 dacC   FALSE 0.238 134.000 0.455 NA   NA
 7661971 7661972 JALI_5551 JALI_5561     TRUE 0.815 -3.000 0.020 NA   NA
 7661972 7661973 JALI_5561 JALI_5571   brnQ FALSE 0.186 150.000 0.008 NA N NA
 7661973 7661974 JALI_5571 JALI_5581 brnQ   FALSE 0.388 175.000 0.545 1.000 N NA
 7661974 7661975 JALI_5581 JALI_5591     FALSE 0.239 178.000 0.600 NA   NA
 7661975 7661976 JALI_5591 JALI_5601   lpdA FALSE 0.019 209.000 0.000 NA   NA
 7661976 7661977 JALI_5601 JALI_5611 lpdA lipA TRUE 0.898 -3.000 0.009 1.000 N NA
 7661977 7661978 JALI_5611 JALI_5621 lipA sctJ FALSE 0.240 104.000 0.004 1.000 N NA
 7661978 7661979 JALI_5621 JALI_5631 sctJ   TRUE 0.932 1.000 0.875 NA   NA
 7661979 7661980 JALI_5631 JALI_5641   sctL FALSE 0.253 276.000 0.556 NA   NA
 7661980 7661981 JALI_5641 JALI_5651 sctL sctR TRUE 0.991 13.000 0.700 1.000 Y NA
 7661981 7661982 JALI_5651 JALI_5661 sctR sctS TRUE 0.994 12.000 0.700 0.013 Y NA
 7661982 7661983 JALI_5661 JALI_5671 sctS sctT TRUE 0.992 7.000 0.875 1.000 Y NA
 7661984 7661985 JALI_5681 JALI_5691     TRUE 0.444 91.000 1.000 NA   NA
 7661985 7661986 JALI_5691 JALI_5701     TRUE 0.933 6.000 0.667 NA   NA
 7661986 7661987 JALI_5701 JALI_5711     TRUE 0.846 -15.000 0.667 NA   NA
 7661987 7661988 JALI_5711 JALI_5721   gspG TRUE 0.840 -16.000 0.667 NA   NA
 7661988 7661989 JALI_5721 JALI_5731 gspG gspF TRUE 0.845 62.000 0.030 NA Y NA
 7661989 7661990 JALI_5731 JALI_5741 gspF gspE TRUE 0.986 12.000 0.035 1.000 Y NA
 7661990 7661991 JALI_5741 JALI_5751 gspE gspD TRUE 0.972 -16.000 0.467 1.000 Y NA
 7661991 7661992 JALI_5751 JALI_5761 gspD   TRUE 0.909 1.000 0.467 NA   NA
 7661992 7661993 JALI_5761 JALI_5771   pepP FALSE 0.140 128.000 0.014 NA   NA
 7661993 7661994 JALI_5771 JALI_5781 pepP mutL TRUE 0.925 11.000 0.007 1.000 N NA
 7661995 7661996 JALI_5791 JALI_5801 scc2   TRUE 0.913 17.000 0.333 NA   NA
 7661996 7661997 JALI_5801 JALI_5811   copB TRUE 0.836 37.000 0.857 NA   NA
 7661997 7661998 JALI_5811 JALI_5821 copB copD TRUE 0.939 31.000 0.750 0.008   NA
 7662000 7662001 JALI_5841 JALI_5851 thrS minD FALSE 0.338 451.000 0.035 1.000 N NA
 7662001 7662002 JALI_5851 JALI_5861 minD gp6D TRUE 0.942 5.000 0.875 NA   NA
 7662002 7662003 JALI_5861 JALI_5871 gp6D   TRUE 0.817 -34.000 0.750 NA   NA
 7662003 7662004 JALI_5871 JALI_5881   trpS FALSE 0.158 199.000 0.039 NA   NA
 7662004 7662005 JALI_5881 JALI_5891 trpS uvrB TRUE 0.919 25.000 0.006 0.060 N NA
 7662005 7662006 JALI_5891 JALI_5901 uvrB eno FALSE 0.196 162.000 0.006 1.000 N NA
 7662006 7662007 JALI_5901 JALI_5911 eno rbsU FALSE 0.220 127.000 0.006 1.000 N NA
 7662007 7662008 JALI_5911 JALI_5921 rbsU   FALSE 0.360 125.000 0.750 1.000   NA
 7662009 7662010 JALI_5931 JALI_5941   sdhB FALSE 0.204 97.000 0.019 NA   NA
 7662010 7662011 JALI_5941 JALI_5951 sdhB sdhA TRUE 0.897 79.000 0.231 0.002 Y NA
 7662011 7662012 JALI_5951 JALI_5961 sdhA   FALSE 0.344 -3.000 0.000 NA   NA
 7662012 7662013 JALI_5961 JALI_5971     FALSE 0.019 147.000 0.000 NA   NA
 7662013 7662014 JALI_5971 JALI_5981   dsdD FALSE 0.318 85.000 0.008 NA N NA
 7662015 7662016 JALI_5991 JALI_6001 exbB   TRUE 0.990 -3.000 0.583 0.031 Y NA
 7662016 7662017 JALI_6001 JALI_6011     TRUE 0.917 3.000 0.500 NA   NA
 7662017 7662018 JALI_6011 JALI_6021   tolB TRUE 0.922 0.000 0.750 NA   NA
 7662018 7662019 JALI_6021 JALI_6031 tolB pal TRUE 0.941 -3.000 0.750 NA N NA
 7662019 7662020 JALI_6031 JALI_6041 pal   TRUE 0.511 -10.000 0.000 1.000   NA
 7662020 7662021 JALI_6041 JALI_6051     FALSE 0.051 71.000 0.000 NA   NA
 7662022 10800775 JALI_6061 JALI_t15 ahpC   FALSE 0.323 26.000 0.000 NA   NA
 10800775 7662023 JALI_t15 JALI_6071   groEL2 FALSE 0.024 111.000 0.000 NA   NA
 7662023 7662024 JALI_6071 JALI_6081 groEL2   FALSE 0.358 77.000 0.128 NA   NA
 7662026 7662027 JALI_6101 JALI_6111   ung TRUE 0.782 -15.000 0.140 NA   NA
 7662028 7662029 JALI_6121 JALI_6131 uvrD rpoN TRUE 0.934 4.000 0.015 1.000 N NA
 7662030 7662031 JALI_6141 JALI_6151     TRUE 0.845 -3.000 0.055 NA   NA
 7662031 7662032 JALI_6151 JALI_6161   folA TRUE 0.669 -28.000 0.017 NA   NA
 7662032 7662033 JALI_6161 JALI_6171 folA folP TRUE 0.976 -3.000 0.015 1.000 Y NA
 7662033 7662034 JALI_6171 JALI_6181 folP folX TRUE 0.978 -3.000 0.030 1.000 Y NA
 7662034 7662035 JALI_6181 JALI_6191 folX rpoD TRUE 0.939 19.000 0.030 1.000 N NA
 7662035 7662036 JALI_6191 JALI_6201 rpoD   FALSE 0.289 149.000 0.857 NA   NA
 7662037 7662038 JALI_6211 JALI_6221 rpsT   FALSE 0.061 232.000 0.004 NA   NA
 7662041 7662042 JALI_6251 JALI_6261     FALSE 0.019 228.000 0.000 NA   NA
 7662042 7662043 JALI_6261 JALI_6271     FALSE 0.341 108.000 0.833 NA   NA
 7662043 7662044 JALI_6271 JALI_6281   mviN FALSE 0.105 243.000 0.008 NA   NA
 7662048 7662049 JALI_6321 JALI_6331 ispA glmU TRUE 0.610 56.000 0.054 1.000   NA
 7662049 7662050 JALI_6331 JALI_6341 glmU   TRUE 0.683 53.000 0.250 1.000   NA
 7662051 10800776 JALI_6351 JALI_t16     FALSE 0.029 101.000 0.000 NA   NA
 7662054 7662055 JALI_6381 JALI_6391 nqrA   TRUE 0.873 22.000 0.086 NA   NA
 7662057 7662058 JALI_6411 JALI_6421 aspC   TRUE 0.753 -25.000 0.005 1.000 N NA
 7662059 7662060 JALI_6431 JALI_6441 recB recC TRUE 0.993 2.000 0.542 0.005 Y NA
 7662064 7662065 JALI_6481 JALI_6491     TRUE 0.628 -21.000 0.005 1.000   NA
 7662066 7662067 JALI_6501 JALI_6511     TRUE 0.933 0.000 1.000 NA   NA
 7662067 7662068 JALI_6511 JALI_6521     TRUE 0.849 -9.000 0.429 NA   NA
 7662068 7662069 JALI_6521 JALI_6531     TRUE 0.748 3.000 0.006 NA   NA
 7662069 7662070 JALI_6531 JALI_6541   recA FALSE 0.133 261.000 0.000 1.000 N NA
 7662070 7662071 JALI_6541 JALI_6551 recA   FALSE 0.059 286.000 0.000 1.000   NA
 7662071 7662072 JALI_6551 JALI_6561   recD TRUE 0.867 -3.000 0.023 1.000   NA
 7662072 7662073 JALI_6561 JALI_6571 recD   FALSE 0.268 66.000 0.008 NA   NA
 7662074 7662075 JALI_6581 JALI_6591     TRUE 0.837 9.000 0.009 NA   NA
 7662075 7662076 JALI_6591 JALI_6601   kdsA TRUE 0.784 -3.000 0.011 NA   NA
 10800778 7662077 JALI_t18 JALI_6611     FALSE 0.026 106.000 0.000 NA   NA
 7662077 7662078 JALI_6611 JALI_6621     TRUE 0.933 0.000 1.000 NA   NA
 7662078 7662079 JALI_6621 JALI_6631   sfhB FALSE 0.103 82.000 0.002 NA   NA
 7662079 7662080 JALI_6631 JALI_6641 sfhB   FALSE 0.276 100.000 0.004 0.042   NA
 7662081 7662082 JALI_6651 JALI_6661 gyrA2 gyrB TRUE 0.993 15.000 0.110 0.005 Y NA
 7662083 7662084 JALI_6671 JALI_6681 hemA sycE FALSE 0.065 719.000 0.000 1.000   NA
 7662084 7662085 JALI_6681 JALI_6691 sycE   TRUE 0.896 4.000 0.146 NA   NA
 7662085 7662086 JALI_6691 JALI_6701     TRUE 0.649 44.000 0.171 NA   NA
 7662086 7662087 JALI_6701 JALI_6711     TRUE 0.899 27.000 0.857 NA   NA
 7662087 7662088 JALI_6711 JALI_6721     TRUE 0.415 19.000 0.000 NA   NA
 7662088 7662089 JALI_6721 JALI_6731     FALSE 0.405 20.000 0.000 NA   NA
 7662089 7662090 JALI_6731 JALI_6741   sctN TRUE 0.933 2.000 0.857 NA   NA
 7662090 7662091 JALI_6741 JALI_6751 sctN   TRUE 0.925 23.000 0.875 NA   NA
 7662091 7662092 JALI_6751 JALI_6761     TRUE 0.934 4.000 0.750 NA   NA
 7662092 7662093 JALI_6761 JALI_6771   sctQ TRUE 0.930 10.000 0.600 NA   NA
 7662093 7662094 JALI_6771 JALI_6781 sctQ pkn5 FALSE 0.413 135.000 0.583 1.000 N NA
 7662094 7662095 JALI_6781 JALI_6791 pkn5   TRUE 0.934 -3.000 0.208 1.000 N NA
 7662095 10800779 JALI_6791 JALI_t19     FALSE 0.020 135.000 0.000 NA   NA
 7662096 7662097 JALI_6801 JALI_6811 aspC   TRUE 0.903 -10.000 0.848 1.000   NA
 7662097 10800780 JALI_6811 JALI_t20     FALSE 0.030 97.000 0.000 NA   NA
 10800780 7662098 JALI_t20 JALI_6821   rrf FALSE 0.018 193.000 0.000 NA   NA
 7662098 7662099 JALI_6821 JALI_6831 rrf pyrH TRUE 0.949 -3.000 0.626 1.000 N NA
 7662099 7662100 JALI_6831 JALI_6841 pyrH tsf TRUE 0.963 13.000 0.416 1.000 N NA
 7662100 7662101 JALI_6841 JALI_6851 tsf rpsB TRUE 0.986 -3.000 0.748 1.000 Y NA
 7662101 10800781 JALI_6851 JALI_t23 rpsB   FALSE 0.039 83.000 0.000 NA   NA
 10800781 7662102 JALI_t23 JALI_6861   ompA FALSE 0.019 221.000 0.000 NA   NA
 7662103 7662104 JALI_6871 JALI_6881 pbpB   TRUE 0.585 64.000 0.400 1.000   NA
 7662104 7662105 JALI_6881 JALI_6891     FALSE 0.061 343.000 0.000 1.000   NA
 7662105 7662106 JALI_6891 JALI_6901     TRUE 0.988 3.000 0.466 1.000 Y NA
 7662106 7662107 JALI_6901 JALI_6911     TRUE 0.989 4.000 0.482 1.000 Y NA
 7662107 7662108 JALI_6911 JALI_6921   sufS TRUE 0.915 -7.000 0.193 1.000 N NA
 7662108 7662109 JALI_6921 JALI_6931 sufS parB FALSE 0.181 136.000 0.002 1.000 N NA
 7662110 7662111 JALI_6941 JALI_6951 dppF dppD TRUE 0.937 -7.000 0.250 0.003   NA
 7662112 7662113 JALI_6961 JALI_6971     TRUE 0.939 3.000 0.937 NA   NA
 7662113 7662114 JALI_6971 JALI_6981   pgk FALSE 0.116 128.000 0.005 1.000   NA
 7662114 7662115 JALI_6981 JALI_6991 pgk   FALSE 0.020 259.000 0.000 NA   NA
 7662115 7662116 JALI_6991 JALI_7001     TRUE 0.643 51.000 0.333 NA   NA
 7662116 7662117 JALI_7001 JALI_7011     TRUE 0.466 86.000 1.000 NA   NA
 7662118 7662119 JALI_7021 JALI_7031 nth trmE TRUE 0.872 7.000 0.007 1.000   NA
 7662120 7662121 JALI_7041 JALI_7051 psdD   TRUE 0.494 65.000 0.052 1.000   NA
 7662121 7662122 JALI_7051 JALI_7061   secA FALSE 0.187 259.000 0.015 1.000   NA
 7662123 7662124 JALI_7071 JALI_7081   engA FALSE 0.144 77.000 0.005 NA   NA
 7662124 7662125 JALI_7081 JALI_7091 engA pcnB FALSE 0.145 116.000 0.006 1.000   NA
 7662125 7662126 JALI_7091 JALI_7101 pcnB clpX TRUE 0.912 15.000 0.006 1.000 N NA
 7662126 7662127 JALI_7101 JALI_7111 clpX clpP TRUE 0.989 10.000 0.352 1.000 Y NA
 7662127 7662128 JALI_7111 JALI_7121 clpP tig TRUE 0.679 167.000 0.351 1.000 Y NA
 7662128 10800782 JALI_7121 JALI_t24 tig   FALSE 0.208 36.000 0.000 NA   NA
 7662129 7662130 JALI_7131 JALI_7141   mreB TRUE 0.929 5.000 0.009 1.000 N NA
 7662130 7662131 JALI_7141 JALI_7151 mreB pckA TRUE 0.904 -3.000 0.011 1.000 N NA
 7662131 7662132 JALI_7151 JALI_7161 pckA   FALSE 0.180 112.000 0.026 NA   NA
 7662132 7662133 JALI_7161 JALI_7171     TRUE 0.906 27.000 1.000 NA   NA
 7662134 7662135 JALI_7181 JALI_7191 ompB gpdA FALSE 0.288 133.000 0.375 1.000   NA
 7662135 7662136 JALI_7191 JALI_7201 gpdA   TRUE 0.924 -3.000 0.044 1.000 N NA
 7662136 7662137 JALI_7201 JALI_7211     TRUE 0.890 12.000 0.044 NA   NA
 7662137 7662138 JALI_7211 JALI_7221   fliI TRUE 0.865 -7.000 0.500 NA   NA
 7662138 7662139 JALI_7221 JALI_7231 fliI   TRUE 0.480 74.000 0.667 NA   NA
 7662139 7662140 JALI_7231 JALI_7241   fliF TRUE 0.923 5.000 0.500 NA   NA
 7662140 7662141 JALI_7241 JALI_7251 fliF   FALSE 0.288 273.000 0.136 NA N NA
 7662141 7662142 JALI_7251 JALI_7261     TRUE 0.931 -3.000 0.138 1.000 N NA
 7662142 7662143 JALI_7261 JALI_7271   pgmA TRUE 0.819 -45.000 0.021 1.000 N NA
 7662144 7662145 JALI_7281 JALI_7291     FALSE 0.200 119.000 0.080 NA   NA
 7662145 7662146 JALI_7291 JALI_7301   birA TRUE 0.820 27.000 0.061 NA   NA
 7662147 7662148 JALI_7311 JALI_7321     TRUE 0.588 92.000 0.078 0.044 N NA
 7662148 7662149 JALI_7321 JALI_7331     TRUE 0.830 24.000 0.026 NA   NA
 7662149 7662150 JALI_7331 JALI_7341   serS TRUE 0.721 37.000 0.057 NA   NA
 7662151 7662152 JALI_7351 JALI_7361 ribD ribA TRUE 0.740 110.000 0.007 0.005 Y NA
 7662152 7662153 JALI_7361 JALI_7371 ribA ribH TRUE 0.962 -31.000 0.006 0.005 Y NA
 7662155 7662156 JALI_7391 JALI_7401   dagA FALSE 0.271 105.000 0.316 NA   NA
 7662156 7662157 JALI_7401 JALI_7411 dagA   TRUE 0.573 58.000 0.316 NA   NA
 7662158 7662159 JALI_7421 JALI_7431     TRUE 0.857 -3.000 0.016 1.000   NA
 7662159 7662160 JALI_7431 JALI_7441   ftsK TRUE 0.894 4.000 0.016 1.000   NA
 7662160 10800783 JALI_7441 JALI_t25 ftsK   FALSE 0.018 181.000 0.000 NA   NA
 10800784 10800785 JALI_r4 JALI_r3     FALSE 0.023 118.000 0.000 NA   NA
 7662161 7662162 JALI_7451 JALI_7461 dmpP   FALSE 0.174 143.000 0.007 NA N NA
 7662162 7662163 JALI_7461 JALI_7471     FALSE 0.223 105.000 0.007 NA N NA
 7662163 7662164 JALI_7471 JALI_7481   hctA FALSE 0.210 188.000 0.048 1.000   NA
 7662166 7662167 JALI_7501 JALI_7511 hemG hemN TRUE 0.989 -3.000 0.057 0.004 Y NA
 7662167 7662168 JALI_7511 JALI_7521 hemN hemE TRUE 0.971 -27.000 0.012 0.004 Y NA
 7662168 7662169 JALI_7521 JALI_7531 hemE mfd TRUE 0.919 13.000 0.006 1.000 N NA
 7662169 7662170 JALI_7531 JALI_7541 mfd alaS TRUE 0.780 -24.000 0.006 1.000 N NA
 10800786 10800787 JALI_r5 JALI_r6     FALSE 0.023 3299.000 0.000 NA   NA
 10800787 7662171 JALI_r6 JALI_7551   tktB FALSE 0.020 277.000 0.000 NA   NA
 7662174 7662175 JALI_7581 JALI_7591     TRUE 0.585 47.000 0.054 NA   NA
 7662175 7662176 JALI_7591 JALI_7601   groEL FALSE 0.358 81.000 0.027 1.000   NA
 7662176 10800788 JALI_7601 JALI_t26 groEL   FALSE 0.044 79.000 0.000 NA   NA
 7662177 7662178 JALI_7611 JALI_7621 murF mraY TRUE 0.728 146.000 0.018 0.008 Y NA
 7662178 7662179 JALI_7621 JALI_7631 mraY murD TRUE 0.994 12.000 0.647 0.008 Y NA
 7662179 7662180 JALI_7631 JALI_7641 murD nlpD TRUE 0.969 -3.000 0.006 1.000 Y NA
 7662180 7662181 JALI_7641 JALI_7651 nlpD ftsW TRUE 0.951 16.000 0.088 1.000 N NA
 7662181 7662182 JALI_7651 JALI_7661 ftsW murG TRUE 0.821 -91.000 0.037 1.000 N NA
 7662182 7662183 JALI_7661 JALI_7671 murG murC TRUE 0.988 5.000 0.270 1.000 Y NA
 7662184 7662185 JALI_7681 JALI_7691     FALSE 0.060 158.000 0.005 NA   NA
 7662186 7662187 JALI_7701 JALI_7711 rbsV miaA TRUE 0.944 4.000 0.040 1.000 N NA
 7662189 7662190 JALI_7731 JALI_7741     FALSE 0.023 454.000 0.000 NA   NA
 7662190 7662191 JALI_7741 JALI_7751   fabF TRUE 0.821 11.000 0.008 NA   NA
 7662191 7662192 JALI_7751 JALI_7761 fabF   TRUE 0.941 -3.000 0.333 1.000 N NA
 7662196 7662197 JALI_7801 JALI_7811   aas TRUE 0.991 8.000 0.032 0.036 Y NA
 7662197 7662198 JALI_7811 JALI_7821 aas bioF TRUE 0.787 43.000 0.032 1.000 N NA
 7662199 7662200 JALI_7831 JALI_7841 priA   TRUE 0.531 -45.000 0.007 NA   NA
 7662201 7662202 JALI_7851 JALI_7861   lysS FALSE 0.055 232.000 0.000 1.000   NA
 7662205 7662206 JALI_7891 JALI_7901 rnpA rnpA TRUE 0.954 13.000 0.787 1.000   NA
 7662207 7662208 JALI_7911 JALI_7921 rpmJ rpsN TRUE 0.920 24.000 0.013 0.042   NA
 7662209 7662210 JALI_7931 JALI_7941     FALSE 0.022 122.000 0.000 NA   NA
 7662212 7662213 JALI_7961 JALI_7971 uvrC mutS TRUE 0.708 82.000 0.006 1.000 Y NA
 7662214 7662215 JALI_7981 JALI_7991   dnaG FALSE 0.402 2.000 0.000 NA   NA
 7662215 7662216 JALI_7991 JALI_8001 dnaG   FALSE 0.406 85.000 0.625 NA   NA
 7662216 7662217 JALI_8001 JALI_8011     FALSE 0.236 127.000 0.333 NA   NA
 10800789 7662221 JALI_t27 JALI_8051   rplY FALSE 0.020 276.000 0.000 NA   NA
 7662221 7662222 JALI_8051 JALI_8061 rplY pth TRUE 0.993 8.000 0.496 0.066 Y NA
 7662222 7662223 JALI_8061 JALI_8071 pth rpsF TRUE 0.705 138.000 0.029 0.066 Y NA
 7662223 7662224 JALI_8071 JALI_8081 rpsF rpsR TRUE 0.992 17.000 0.319 0.042 Y NA
 7662224 7662225 JALI_8081 JALI_8091 rpsR rplI TRUE 0.992 21.000 0.499 0.042 Y NA
 7662225 7662226 JALI_8091 JALI_8101 rplI ispE TRUE 0.507 65.000 0.007 1.000 N NA
 7662227 7662228 JALI_8111 JALI_8121   ptr FALSE 0.193 179.000 0.250 NA   NA
 7662228 7662229 JALI_8121 JALI_8131 ptr plsB FALSE 0.237 57.000 0.000 1.000   NA
 7662229 7662230 JALI_8131 JALI_8141 plsB cafE TRUE 0.907 13.000 0.019 1.000   NA
 7662231 7662232 JALI_8151 JALI_8161     FALSE 0.179 -51.000 0.000 NA   NA
 7662232 7662233 JALI_8161 JALI_8171   rpmF TRUE 0.450 13.000 0.000 NA   NA
 7662233 7662234 JALI_8171 JALI_8181 rpmF plsX TRUE 0.949 23.000 0.418 1.000 N NA
 7662234 7662235 JALI_8181 JALI_8191 plsX pmpD FALSE 0.106 221.000 0.005 1.000   NA
 7662235 7662236 JALI_8191 JALI_8201 pmpD   FALSE 0.019 244.000 0.000 NA   NA
 7662237 7662238 JALI_8211 JALI_8221     TRUE 0.936 21.000 1.000 NA   NA
 7662239 7662240 JALI_8231 JALI_8241   glmS TRUE 0.945 11.000 0.030 1.000 N NA
 7662240 7662241 JALI_8241 JALI_8251 glmS tyrP FALSE 0.240 103.000 0.003 1.000 N NA
 7662241 7662242 JALI_8251 JALI_8261 tyrP   TRUE 0.840 182.000 1.000 0.003 Y NA
 7662242 7662243 JALI_8261 JALI_8271     TRUE 0.700 42.000 0.250 NA   NA
 7662245 7662246 JALI_8291 JALI_8301 sucC sucD TRUE 0.994 15.000 0.467 0.002 Y NA
 7662246 7662247 JALI_8301 JALI_8311 sucD htrA FALSE 0.329 138.000 0.069 1.000 N NA
 7662247 7662248 JALI_8311 JALI_8321 htrA   FALSE 0.144 199.000 0.000 0.026   NA
 7662249 7662250 JALI_8331 JALI_8341 rmuC pssA TRUE 0.838 4.000 0.011 NA   NA
 7662251 7662252 JALI_8351 JALI_8361 nrdA nrdB TRUE 0.981 38.000 0.564 0.002 Y NA
 7662252 7662253 JALI_8361 JALI_8371 nrdB trmB FALSE 0.154 260.000 0.008 1.000   NA
 7662255 7662256 JALI_8391 JALI_8401 murB nusB FALSE 0.252 133.000 0.008 1.000 N NA
 7662257 7662258 JALI_8411 JALI_8421 infC rpmI TRUE 0.989 20.000 0.652 1.000 Y NA
 7662258 7662259 JALI_8421 JALI_8431 rpmI rplT TRUE 0.994 19.000 0.928 0.042 Y NA
 7662259 7662260 JALI_8431 JALI_8441 rplT pheS TRUE 0.988 7.000 0.202 1.000 Y NA
 7662260 10800791 JALI_8441 JALI_t29 pheS   FALSE 0.402 2.000 0.000 NA   NA
 10800791 7662261 JALI_t29 JALI_8451     FALSE 0.019 225.000 0.000 NA   NA
 7662262 7662263 JALI_8461 JALI_8471     TRUE 0.964 3.000 0.631 0.043   NA
 7662264 7662265 JALI_8481 JALI_8491 tilS ftsH FALSE 0.330 161.000 0.145 1.000 N NA
 7662266 7662267 JALI_8501 JALI_8511 pnp rpsO TRUE 0.976 29.000 0.335 1.000 Y NA
 7662268 7662269 JALI_8521 JALI_8531     TRUE 0.695 32.000 0.013 NA   NA
 7662270 7662271 JALI_8541 JALI_8551     FALSE 0.314 135.000 1.000 NA   NA
 7662271 7662272 JALI_8551 JALI_8561     TRUE 0.945 16.000 1.000 NA   NA
 7662272 7662273 JALI_8561 JALI_8571     TRUE 0.898 28.000 1.000 NA   NA
 7662274 7662275 JALI_8581 JALI_8591     TRUE 0.922 19.000 0.571 NA   NA
 7662276 7662277 JALI_8601 JALI_8611 map   TRUE 0.706 58.000 0.429 NA N NA
 7662277 7662278 JALI_8611 JALI_8621     TRUE 0.981 18.000 0.042 NA Y NA
 7662278 7662279 JALI_8621 JALI_8631     FALSE 0.223 195.000 0.020 NA N NA
 7662281 7662282 JALI_8651 JALI_8671     FALSE 0.018 188.000 0.000 NA   NA
 7662283 7662284 JALI_8681 JALI_8691   cpa FALSE 0.262 114.000 0.400 NA   NA
 7662284 7662285 JALI_8691 JALI_8701 cpa ispH FALSE 0.392 95.000 0.400 1.000   NA
 7662286 7662287 JALI_8711 JALI_8721 copD2 copB2 TRUE 0.948 12.000 1.000 NA   NA
 7662287 7662288 JALI_8721 JALI_8731 copB2 lcrH TRUE 0.896 27.000 0.833 NA   NA
 7662288 7662289 JALI_8731 JALI_8741 lcrH   TRUE 0.809 -78.000 0.833 NA   NA
 7662291 7662292 JALI_8761 JALI_8771   glgB TRUE 0.932 15.000 0.636 NA   NA
 7662293 7662294 JALI_8781 JALI_8791     FALSE 0.180 210.000 0.000 0.002   NA
 7662294 7662295 JALI_8791 JALI_8801   pmpE FALSE 0.306 178.000 0.667 1.000   NA
 7662295 7662296 JALI_8801 JALI_8802 pmpE pmpF TRUE 0.871 3.000 0.000 0.013   NA
 7662297 7662298 JALI_8811 JALI_8821 pmpG pmpH TRUE 0.945 31.000 1.000 0.013   NA
 7662298 7662299 JALI_8821 JALI_8831 pmpH   FALSE 0.022 414.000 0.000 NA   NA
 7661402 7661403 PJALI_3 PJALI_4     TRUE 0.873 -6.000 0.500 NA   NA
 7661403 7661404 PJALI_4 PJALI_5     TRUE 0.574 62.000 0.600 NA   NA
 7661404 7661405 PJALI_5 PJALI_6     TRUE 0.521 70.000 0.800 NA   NA
 7661405 7661406 PJALI_6 PJALI_7     TRUE 0.881 28.000 0.750 NA   NA
 7661406 7661407 PJALI_7 PJALI_8     TRUE 0.909 -3.000 0.750 NA   NA
 7661407 7661400 PJALI_8 PJALI_1     FALSE 0.019 238.000 0.000 NA   NA