For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.
Also see:
Column | Description |
Gene1 | VIMSS id of 1st gene in pair |
SysName1 | Systematic name of 1st gene in pair |
Name1 | Ordinary name of 1st gene in pair |
Gene2 | VIMSS id of 2nd gene in pair |
SysName2 | Systematic name of 2nd gene in pair |
Name2 | Ordinary name of 2nd gene in pair |
bOp | Whether the pair is predicted to lie in the same operon or not |
pOp | Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions. |
Sep | Distance between the two genes, in base pairs |
MOGScore | Conservation, ranging from 0 (not conserved) to 1 (100% conserved) |
GOScore | Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized |
COGSim | Whether the genes share a COG category or not |
ExprSim | Correlation of expression patterns (not available for most genomes) |
Gene1 | Gene2 | SysName1 | SysName2 | Name1 | Name2 | bOp | pOp | Sep | MOGScore | GOScore | COGSim | ExprSim |
7640683 | 7640684 | HCDSEM_001 | HCDSEM_002 | cobQ | cobP | TRUE | 0.995 | 0.000 | 0.031 | 1.000 | Y | NA |
7640684 | 7640685 | HCDSEM_002 | HCDSEM_003 | cobP | cobN | FALSE | 0.267 | 1.000 | 0.000 | 1.000 | NA | |
7640685 | 7640686 | HCDSEM_003 | HCDSEM_004 | cobN | cobO | TRUE | 0.945 | -15.000 | 0.005 | 1.000 | NA | |
7640686 | 7640687 | HCDSEM_004 | HCDSEM_005 | cobO | cbiX | FALSE | 0.176 | 10.000 | 0.000 | 0.048 | NA | |
7640687 | 7640688 | HCDSEM_005 | HCDSEM_006 | cbiX | cobH | TRUE | 0.945 | 30.000 | 0.075 | 0.048 | NA | |
7640688 | 7640689 | HCDSEM_006 | HCDSEM_007 | cobH | FALSE | 0.177 | 89.000 | 0.000 | NA | NA | ||
7640689 | 7640690 | HCDSEM_007 | HCDSEM_008 | FALSE | 0.246 | 2.000 | 0.000 | NA | NA | |||
7640690 | 7640691 | HCDSEM_008 | HCDSEM_009 | cobJ | FALSE | 0.207 | 3.000 | 0.000 | NA | NA | ||
7640691 | 7640692 | HCDSEM_009 | HCDSEM_010 | cobJ | cobM | FALSE | 0.207 | 3.000 | 0.000 | 0.047 | NA | |
7640693 | 7640694 | HCDSEM_011 | HCDSEM_012 | FALSE | 0.180 | 690.000 | 0.000 | NA | NA | |||
7640695 | 10793955 | HCDSEM_013 | HCDSEM_014 | cobA | FALSE | 0.207 | 3.000 | 0.000 | NA | NA | ||
10793955 | 7640696 | HCDSEM_014 | HCDSEM_015 | cobD | FALSE | 0.246 | 2.000 | 0.000 | NA | NA | ||
7640699 | 7640700 | HCDSEM_018 | HCDSEM_019 | dnaQ | gidA | FALSE | 0.018 | -13.000 | 0.000 | 1.000 | N | NA |
7640700 | 7640701 | HCDSEM_019 | HCDSEM_020 | gidA | trmE | FALSE | 0.207 | 3.000 | 0.000 | 1.000 | NA | |
7640702 | 7640703 | HCDSEM_021 | HCDSEM_022 | rplM | rpsI | TRUE | 0.967 | -7.000 | 0.022 | NA | NA | |
7640703 | 7640704 | HCDSEM_022 | HCDSEM_023 | rpsI | FALSE | 0.246 | 2.000 | 0.000 | NA | NA | ||
7640704 | 7640705 | HCDSEM_023 | HCDSEM_024 | hisB | FALSE | 0.192 | -13.000 | 0.000 | NA | NA | ||
7640705 | 7640706 | HCDSEM_024 | HCDSEM_025 | hisB | hisH | TRUE | 0.994 | -9.000 | 0.049 | 0.061 | Y | NA |
7640706 | 7640707 | HCDSEM_025 | HCDSEM_026 | hisH | hisA | TRUE | 0.872 | 4.000 | 0.000 | 0.061 | Y | NA |
7640707 | 7640708 | HCDSEM_026 | HCDSEM_027 | hisA | hisF | TRUE | 0.886 | 3.000 | 0.000 | 0.061 | Y | NA |
7640708 | 7640709 | HCDSEM_027 | HCDSEM_028 | hisF | hisI | TRUE | 0.991 | 20.000 | 0.105 | 0.061 | Y | NA |
7640709 | 7640710 | HCDSEM_028 | HCDSEM_029 | hisI | FALSE | 0.182 | -31.000 | 0.000 | NA | NA | ||
7640710 | 7640711 | HCDSEM_029 | HCDSEM_030 | metF | FALSE | 0.174 | 23.000 | 0.000 | NA | NA | ||
7640711 | 7640712 | HCDSEM_030 | HCDSEM_031 | metF | FALSE | 0.178 | 109.000 | 0.000 | NA | NA | ||
7640714 | 7640715 | HCDSEM_033 | HCDSEM_034 | FALSE | 0.186 | 4.000 | 0.000 | NA | NA | |||
7640717 | 7640718 | HCDSEM_036 | HCDSEM_037 | sufB | sufC | TRUE | 0.995 | 0.000 | 0.466 | 1.000 | Y | NA |
7640718 | 7640719 | HCDSEM_037 | HCDSEM_038 | sufC | FALSE | 0.178 | 120.000 | 0.000 | NA | NA | ||
7640719 | 7640720 | HCDSEM_038 | HCDSEM_039 | sufS | FALSE | 0.203 | -12.000 | 0.000 | NA | NA | ||
7640720 | 7640721 | HCDSEM_039 | HCDSEM_040 | sufS | FALSE | 0.180 | -27.000 | 0.000 | 1.000 | NA | ||
7640721 | 7640722 | HCDSEM_040 | HCDSEM_041 | trnC | FALSE | 0.175 | 15.000 | 0.000 | NA | NA | ||
7640722 | 7640723 | HCDSEM_041 | HCDSEM_042 | trnC | valS | FALSE | 0.207 | 3.000 | 0.000 | NA | NA | |
7640723 | 7640724 | HCDSEM_042 | HCDSEM_043 | valS | FALSE | 0.228 | -10.000 | 0.000 | 1.000 | NA | ||
7640724 | 7640725 | HCDSEM_043 | HCDSEM_044 | FALSE | 0.016 | 20.000 | 0.000 | 1.000 | N | NA | ||
7640726 | 7640727 | HCDSEM_045 | HCDSEM_046 | cobT | TRUE | 0.944 | 17.000 | 0.045 | NA | NA | ||
7640727 | 7640728 | HCDSEM_046 | HCDSEM_047 | FALSE | 0.180 | -25.000 | 0.000 | 1.000 | NA | |||
7640729 | 7640730 | HCDSEM_048 | HCDSEM_049 | folE | FALSE | 0.017 | -16.000 | 0.000 | 1.000 | N | NA | |
7640730 | 7640731 | HCDSEM_049 | HCDSEM_050 | gltX | FALSE | 0.030 | -6.000 | 0.000 | 1.000 | N | NA | |
7640733 | 7640734 | HCDSEM_052 | HCDSEM_053 | FALSE | 0.184 | -45.000 | 0.000 | NA | NA | |||
7640734 | 7640735 | HCDSEM_053 | HCDSEM_054 | FALSE | 0.174 | 28.000 | 0.000 | NA | NA | |||
7640735 | 7640736 | HCDSEM_054 | HCDSEM_055 | FALSE | 0.174 | 17.000 | 0.000 | NA | NA | |||
7640738 | 7640739 | HCDSEM_057 | HCDSEM_058 | FALSE | 0.181 | -30.000 | 0.000 | NA | NA | |||
7640739 | 7640740 | HCDSEM_058 | HCDSEM_059 | gatA | TRUE | 0.291 | -6.000 | 0.000 | NA | NA | ||
7640740 | 7640741 | HCDSEM_059 | HCDSEM_060 | gatA | gatB | TRUE | 0.948 | -24.000 | 0.492 | 0.014 | NA | |
7640741 | 7640742 | HCDSEM_060 | HCDSEM_061 | gatB | trnG | FALSE | 0.252 | -9.000 | 0.000 | NA | NA | |
7640742 | 7640743 | HCDSEM_061 | HCDSEM_062 | trnG | trnW | FALSE | 0.267 | 1.000 | 0.000 | NA | NA | |
7640743 | 7640744 | HCDSEM_062 | HCDSEM_063 | trnW | rplK | FALSE | 0.176 | 79.000 | 0.000 | NA | NA | |
7640744 | 7640745 | HCDSEM_063 | HCDSEM_064 | rplK | rplJ | TRUE | 0.939 | 20.000 | 0.002 | NA | NA | |
7640745 | 7640746 | HCDSEM_064 | HCDSEM_065 | rplJ | rplL | TRUE | 0.946 | 18.000 | 0.884 | NA | NA | |
7640746 | 7640747 | HCDSEM_065 | HCDSEM_066 | rplL | rpoB | TRUE | 0.946 | 25.000 | 0.223 | NA | NA | |
7640747 | 7640748 | HCDSEM_066 | HCDSEM_067 | rpoB | rpoC | TRUE | 0.947 | 8.000 | 0.851 | 0.020 | NA | |
7640748 | 7640749 | HCDSEM_067 | HCDSEM_068 | rpoC | rpsL | TRUE | 0.900 | -12.000 | 0.122 | 1.000 | N | NA |
7640749 | 7640750 | HCDSEM_068 | HCDSEM_069 | rpsL | rpsG | TRUE | 0.995 | -7.000 | 0.620 | NA | Y | NA |
7640750 | 7640751 | HCDSEM_069 | HCDSEM_070 | rpsG | fusA | TRUE | 0.995 | 0.000 | 0.114 | NA | Y | NA |
7640751 | 7640752 | HCDSEM_070 | HCDSEM_071 | fusA | tufA | TRUE | 0.995 | -7.000 | 0.102 | 0.013 | Y | NA |
7640752 | 7640753 | HCDSEM_071 | HCDSEM_072 | tufA | rpsJ | TRUE | 0.992 | 4.000 | 0.318 | NA | Y | NA |
7640753 | 7640754 | HCDSEM_072 | HCDSEM_073 | rpsJ | rplC | TRUE | 0.991 | 30.000 | 0.307 | NA | Y | NA |
7640754 | 7640755 | HCDSEM_073 | HCDSEM_074 | rplC | rplD | TRUE | 0.969 | -6.000 | 0.020 | NA | NA | |
7640755 | 7640756 | HCDSEM_074 | HCDSEM_075 | rplD | rplB | FALSE | 0.180 | -24.000 | 0.000 | NA | NA | |
7640756 | 7640757 | HCDSEM_075 | HCDSEM_076 | rplB | rpsS | TRUE | 0.994 | 2.000 | 0.820 | 1.000 | Y | NA |
7640757 | 7640758 | HCDSEM_076 | HCDSEM_077 | rpsS | rplV | TRUE | 0.994 | -10.000 | 0.119 | 1.000 | Y | NA |
7640758 | 7640759 | HCDSEM_077 | HCDSEM_078 | rplV | rpsC | TRUE | 0.995 | 0.000 | 0.109 | 1.000 | Y | NA |
7640759 | 7640760 | HCDSEM_078 | HCDSEM_079 | rpsC | rplP | TRUE | 0.947 | 89.000 | 0.828 | NA | NA | |
7640760 | 7640761 | HCDSEM_079 | HCDSEM_080 | rplP | rpsQ | TRUE | 0.969 | -6.000 | 0.009 | NA | NA | |
7640761 | 7640762 | HCDSEM_080 | HCDSEM_081 | rpsQ | rplN | TRUE | 0.992 | 69.000 | 0.791 | NA | Y | NA |
7640762 | 7640763 | HCDSEM_081 | HCDSEM_082 | rplN | FALSE | 0.192 | -13.000 | 0.000 | NA | NA | ||
7640763 | 7640764 | HCDSEM_082 | HCDSEM_083 | rplE | FALSE | 0.192 | -13.000 | 0.000 | NA | NA | ||
7640764 | 7640765 | HCDSEM_083 | HCDSEM_084 | rplE | rpsN | TRUE | 0.995 | -7.000 | 0.309 | NA | Y | NA |
7640765 | 7640766 | HCDSEM_084 | HCDSEM_085 | rpsN | rpsH | TRUE | 0.996 | -6.000 | 0.295 | NA | Y | NA |
7640766 | 7640767 | HCDSEM_085 | HCDSEM_086 | rpsH | rplF | TRUE | 0.992 | -15.000 | 0.808 | NA | Y | NA |
7640767 | 7640768 | HCDSEM_086 | HCDSEM_087 | rplF | rplR | TRUE | 0.949 | -16.000 | 0.815 | NA | NA | |
7640768 | 7640769 | HCDSEM_087 | HCDSEM_088 | rplR | rpsE | TRUE | 0.971 | 0.000 | 0.814 | NA | NA | |
7640769 | 7640770 | HCDSEM_088 | HCDSEM_089 | rpsE | rplO | TRUE | 0.995 | -9.000 | 0.148 | 1.000 | Y | NA |
7640770 | 7640771 | HCDSEM_089 | HCDSEM_090 | rplO | rpsM | TRUE | 0.863 | 19.000 | 0.000 | 1.000 | Y | NA |
7640771 | 7640772 | HCDSEM_090 | HCDSEM_091 | rpsM | rpsK | TRUE | 0.992 | -22.000 | 0.810 | NA | Y | NA |
7640772 | 7640773 | HCDSEM_091 | HCDSEM_092 | rpsK | rpoA | TRUE | 0.956 | 3.000 | 0.308 | NA | NA | |
7640773 | 7640774 | HCDSEM_092 | HCDSEM_093 | rpoA | rplQ | TRUE | 0.969 | -7.000 | 0.873 | NA | NA | |
7640775 | 7640776 | HCDSEM_094 | HCDSEM_095 | rplY | prs | FALSE | 0.181 | -28.000 | 0.000 | NA | NA | |
7640776 | 7640777 | HCDSEM_095 | HCDSEM_096 | prs | trnM | FALSE | 0.175 | 15.000 | 0.000 | NA | NA | |
7640778 | 10793956 | HCDSEM_097 | HCDSEM_189 | mnmA | FALSE | 0.175 | 12.000 | 0.000 | NA | NA | ||
10793956 | 7640779 | HCDSEM_189 | HCDSEM_098 | prfA | FALSE | 0.176 | 9.000 | 0.000 | NA | NA | ||
7640779 | 7640780 | HCDSEM_098 | HCDSEM_099 | prfA | trnG | FALSE | 0.179 | 6.000 | 0.000 | NA | NA | |
7640780 | 7640781 | HCDSEM_099 | HCDSEM_100 | trnG | FALSE | 0.176 | 86.000 | 0.000 | NA | NA | ||
7640781 | 7640782 | HCDSEM_100 | HCDSEM_101 | hisD | FALSE | 0.252 | -9.000 | 0.000 | NA | NA | ||
7640782 | 7640783 | HCDSEM_101 | HCDSEM_102 | hisD | infA | FALSE | 0.017 | -15.000 | 0.000 | 1.000 | N | NA |
7640783 | 7640784 | HCDSEM_102 | HCDSEM_103 | infA | trnF | FALSE | 0.177 | 8.000 | 0.000 | NA | NA | |
7640785 | 7640786 | HCDSEM_104 | HCDSEM_105 | dnaE | proS | FALSE | 0.228 | -10.000 | 0.000 | 0.083 | NA | |
7640787 | 7640788 | HCDSEM_106 | HCDSEM_107 | rpsP | rplS | FALSE | 0.246 | 2.000 | 0.000 | NA | NA | |
7640788 | 7640789 | HCDSEM_107 | HCDSEM_108 | rplS | trnG | FALSE | 0.174 | 35.000 | 0.000 | NA | NA | |
7640789 | 7640790 | HCDSEM_108 | HCDSEM_109 | trnG | def | FALSE | 0.181 | -22.000 | 0.000 | NA | NA | |
7640792 | 7640793 | HCDSEM_111 | HCDSEM_112 | trpS | FALSE | 0.174 | 21.000 | 0.000 | NA | NA | ||
7640796 | 7640797 | HCDSEM_115 | HCDSEM_116 | FALSE | 0.203 | -12.000 | 0.000 | NA | NA | |||
7640797 | 7640798 | HCDSEM_116 | HCDSEM_117 | cysI | FALSE | 0.207 | 3.000 | 0.000 | NA | NA | ||
7640800 | 7640801 | HCDSEM_119 | HCDSEM_120 | dnaJ | dnaK | TRUE | 0.872 | 4.000 | 0.000 | 0.012 | Y | NA |
7640804 | 7640805 | HCDSEM_123 | HCDSEM_124 | TRUE | 0.864 | 79.000 | 0.000 | 0.024 | Y | NA | ||
7640805 | 7640806 | HCDSEM_124 | HCDSEM_125 | TRUE | 0.925 | -6.000 | 0.000 | NA | Y | NA | ||
7640806 | 7640807 | HCDSEM_125 | HCDSEM_126 | FALSE | 0.177 | 107.000 | 0.000 | NA | NA | |||
7640809 | 7640810 | HCDSEM_128 | HCDSEM_129 | rrsA | trnA | FALSE | 0.179 | 220.000 | 0.000 | NA | NA | |
7640810 | 7640811 | HCDSEM_129 | HCDSEM_130 | trnA | rrlA | FALSE | 0.175 | 15.000 | 0.000 | NA | NA | |
7640811 | 7640812 | HCDSEM_130 | HCDSEM_131 | rrlA | rrfA | FALSE | 0.174 | 17.000 | 0.000 | NA | NA | |
7640812 | 7640813 | HCDSEM_131 | HCDSEM_132 | rrfA | trnM | FALSE | 0.211 | -11.000 | 0.000 | NA | NA | |
7640815 | 7640816 | HCDSEM_134 | HCDSEM_135 | glyA | FALSE | 0.192 | -13.000 | 0.000 | NA | NA | ||
7640816 | 7640817 | HCDSEM_135 | HCDSEM_136 | glyA | ribD | FALSE | 0.267 | 1.000 | 0.000 | 1.000 | NA | |
7640817 | 7640818 | HCDSEM_136 | HCDSEM_137 | ribD | ribC | TRUE | 0.969 | -7.000 | 0.456 | 1.000 | NA | |
7640818 | 7640819 | HCDSEM_137 | HCDSEM_138 | ribC | hisS | FALSE | 0.174 | 29.000 | 0.000 | 1.000 | NA | |
7640819 | 7640820 | HCDSEM_138 | HCDSEM_139 | hisS | FALSE | 0.181 | 5.000 | 0.000 | NA | NA | ||
7640820 | 7640821 | HCDSEM_139 | HCDSEM_140 | hisG | FALSE | 0.228 | -10.000 | 0.000 | NA | NA | ||
7640821 | 7640822 | HCDSEM_140 | HCDSEM_141 | hisG | ribE | TRUE | 0.951 | -12.000 | 0.005 | 1.000 | NA | |
7640824 | 7640825 | HCDSEM_143 | HCDSEM_144 | trnP | metC | FALSE | 0.174 | 39.000 | 0.000 | NA | NA | |
7640825 | 7640826 | HCDSEM_144 | HCDSEM_145 | metC | cysE | TRUE | 0.907 | 2.000 | 0.000 | 0.074 | Y | NA |
7640826 | 7640827 | HCDSEM_145 | HCDSEM_146 | cysE | TRUE | 0.291 | -6.000 | 0.000 | NA | NA | ||
7640827 | 7640828 | HCDSEM_146 | HCDSEM_147 | glyQ | FALSE | 0.183 | -40.000 | 0.000 | NA | NA | ||
7640828 | 7640829 | HCDSEM_147 | HCDSEM_148 | glyQ | FALSE | 0.228 | -10.000 | 0.000 | NA | NA | ||
7640831 | 7640832 | HCDSEM_150 | HCDSEM_151 | groS | groL | TRUE | 0.918 | -7.000 | 0.000 | 0.096 | Y | NA |
7640834 | 7640835 | HCDSEM_153 | HCDSEM_154 | rpsB | FALSE | 0.179 | 589.000 | 0.000 | NA | NA | ||
7640835 | 7640836 | HCDSEM_154 | HCDSEM_155 | rpsB | tsf | TRUE | 0.969 | -7.000 | 0.748 | NA | NA | |
7640836 | 7640837 | HCDSEM_155 | HCDSEM_156 | tsf | frr | TRUE | 0.969 | 0.000 | 0.021 | NA | NA | |
7640838 | 7640839 | HCDSEM_157 | HCDSEM_158 | metG | hisC | FALSE | 0.017 | -21.000 | 0.000 | 1.000 | N | NA |
7640840 | 7640841 | HCDSEM_159 | HCDSEM_160 | rpmB | rpsF | FALSE | 0.228 | -10.000 | 0.000 | NA | NA | |
7640841 | 7640842 | HCDSEM_160 | HCDSEM_161 | rpsF | rpsR | TRUE | 0.949 | -19.000 | 0.319 | NA | NA | |
7640842 | 7640843 | HCDSEM_161 | HCDSEM_162 | rpsR | cysH | FALSE | 0.022 | -10.000 | 0.000 | NA | N | NA |
7640844 | 7640845 | HCDSEM_163 | HCDSEM_164 | trnQ | trnI | FALSE | 0.175 | 53.000 | 0.000 | NA | NA | |
7640848 | 7640849 | HCDSEM_167 | HCDSEM_168 | infC | rpmI | FALSE | 0.228 | -10.000 | 0.000 | NA | NA | |
7640849 | 7640850 | HCDSEM_168 | HCDSEM_169 | rpmI | rplT | FALSE | 0.207 | 3.000 | 0.000 | NA | NA | |
7640850 | 7640851 | HCDSEM_169 | HCDSEM_170 | rplT | pheS | TRUE | 0.992 | 78.000 | 0.202 | 1.000 | Y | NA |
7640851 | 7640852 | HCDSEM_170 | HCDSEM_171 | pheS | FALSE | 0.180 | -25.000 | 0.000 | NA | NA | ||
7640852 | 7640853 | HCDSEM_171 | HCDSEM_172 | FALSE | 0.203 | -12.000 | 0.000 | NA | NA | |||
7640853 | 7640854 | HCDSEM_172 | HCDSEM_173 | TRUE | 0.886 | 3.000 | 0.000 | 0.011 | Y | NA | ||
7640854 | 7640855 | HCDSEM_173 | HCDSEM_174 | TRUE | 0.995 | 0.000 | 0.630 | 0.016 | Y | NA | ||
7640856 | 7640857 | HCDSEM_175 | HCDSEM_176 | clpP | cobS | FALSE | 0.024 | 2.000 | 0.000 | 1.000 | N | NA |
7640858 | 7640859 | HCDSEM_177 | HCDSEM_178 | alaS | rpsD | TRUE | 0.274 | -7.000 | 0.000 | 1.000 | NA | |
7640860 | 7640861 | HCDSEM_179 | HCDSEM_180 | TRUE | 0.286 | 0.000 | 0.000 | NA | NA | |||
7640861 | 7640862 | HCDSEM_180 | HCDSEM_181 | TRUE | 0.890 | -15.000 | 0.268 | 1.000 | N | NA | ||
7640862 | 7640863 | HCDSEM_181 | HCDSEM_182 | TRUE | 0.991 | 44.000 | 0.741 | 0.011 | Y | NA | ||
7640863 | 7640864 | HCDSEM_182 | HCDSEM_183 | FALSE | 0.016 | 51.000 | 0.000 | 0.059 | N | NA | ||
7640864 | 7640865 | HCDSEM_183 | HCDSEM_184 | greA | FALSE | 0.030 | -6.000 | 0.000 | 1.000 | N | NA | |
7640866 | 7640867 | HCDSEM_185 | HCDSEM_186 | rpmJ | FALSE | 0.207 | 3.000 | 0.000 | NA | NA | ||
7640868 | 7640869 | HCDSEM_187 | HCDSEM_188 | trnH | FALSE | 0.178 | 138.000 | 0.000 | NA | NA |