MicrobesOnline Operon Predictions for Helicobacter pylori P12

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 5853301 5853302 HPP12_0001 HPP12_0002 nusB   TRUE 0.942 2.000 0.045 1.000 N NA
 5853302 5853303 HPP12_0002 HPP12_0003   kdsA TRUE 0.944 10.000 0.027 1.000 N NA
 5853303 5853304 HPP12_0003 HPP12_0004 kdsA   TRUE 0.896 -13.000 0.025 1.000 N NA
 5853305 5853306 HPP12_0005 HPP12_0006 pyrF panC TRUE 0.924 1.000 0.012 1.000 N NA
 5853307 5853308 HPP12_t01 HPP12_t02     FALSE 0.191 63.000 0.000 NA   NA
 5853308 5853309 HPP12_t02 HPP12_t03     FALSE 0.304 41.000 0.000 NA   NA
 5853309 5853310 HPP12_t03 HPP12_t04     FALSE 0.290 42.000 0.000 NA   NA
 5853310 5853311 HPP12_t04 HPP12_t05     TRUE 0.780 11.000 0.000 NA   NA
 5853311 5853312 HPP12_t05 HPP12_0007   hopZ FALSE 0.021 493.000 0.000 NA   NA
 5853312 5853313 HPP12_0007 HPP12_0008 hopZ groEL FALSE 0.027 319.000 0.000 NA   NA
 5853313 5853314 HPP12_0008 HPP12_0009 groEL groES TRUE 0.921 25.000 0.356 1.000 Y NA
 5853315 5853316 HPP12_0010 HPP12_0011 dnaG   TRUE 0.955 -3.000 0.035 1.000 N NA
 5853316 5853317 HPP12_0011 HPP12_0012     FALSE 0.222 92.000 0.012 NA   NA
 5853317 5853318 HPP12_0012 HPP12_0013   comB2 FALSE 0.288 145.000 0.235 NA   NA
 5853318 5853319 HPP12_0013 HPP12_0014 comB2 comB3 TRUE 0.981 0.000 1.000 NA   NA
 5853319 5853320 HPP12_0014 HPP12_0015 comB3 comB4 TRUE 0.973 2.000 1.000 NA   NA
 5853320 5853321 HPP12_0015 HPP12_0016 comB4   FALSE 0.037 233.000 0.000 NA   NA
 5853321 5853322 HPP12_0016 HPP12_0017   cheV-1 FALSE 0.321 100.000 0.071 NA   NA
 5853322 5853323 HPP12_0017 HPP12_0018 cheV-1 nspC TRUE 0.957 -3.000 0.042 1.000 N NA
 5853324 5853325 HPP12_0019 HPP12_0020     TRUE 0.978 11.000 0.714 1.000   NA
 5853325 5853326 HPP12_0020 HPP12_0021   hopD FALSE 0.020 619.000 0.000 NA   NA
 5853326 5853327 HPP12_0021 HPP12_0022 hopD gltA FALSE 0.020 534.000 0.000 NA   NA
 5853328 5853329 HPP12_0023 HPP12_0024 icd   FALSE 0.367 62.000 0.021 NA   NA
 5853330 5853331 HPP12_0025 HPP12_0026 bioD   TRUE 0.878 4.000 0.020 NA   NA
 5853332 5853333 HPP12_0027 HPP12_0028   clpS TRUE 0.564 36.000 0.021 NA   NA
 5853333 5853334 HPP12_0028 HPP12_0029 clpS clpA TRUE 0.972 0.000 0.596 NA   NA
 5853334 5853335 HPP12_0029 HPP12_0030 clpA panD TRUE 0.898 -10.000 0.014 1.000 N NA
 5853335 5853336 HPP12_0030 HPP12_0031 panD   TRUE 0.907 11.000 0.029 NA   NA
 5853336 5853337 HPP12_0031 HPP12_0032     TRUE 0.901 0.000 0.017 NA   NA
 5853337 5853338 HPP12_0032 HPP12_0033   comB6 TRUE 0.973 8.000 0.533 1.000   NA
 5853338 5853339 HPP12_0033 HPP12_0034 comB6 comb7 TRUE 0.936 16.000 0.375 NA   NA
 5853339 5853340 HPP12_0034 HPP12_0035 comb7 comB8 TRUE 0.966 -3.000 0.375 NA   NA
 5853340 5853341 HPP12_0035 HPP12_0036 comB8 comB9 TRUE 0.988 0.000 1.000 NA Y NA
 5853341 5853342 HPP12_0036 HPP12_0037 comB9 comB10 TRUE 0.969 -7.000 0.375 NA Y NA
 5853342 5853343 HPP12_0037 HPP12_0038 comB10   TRUE 0.470 70.000 0.020 1.000 N NA
 5853343 5853344 HPP12_0038 HPP12_0039   gmd TRUE 0.427 121.000 0.054 1.000 Y NA
 5853344 5853345 HPP12_0039 HPP12_0040 gmd   TRUE 0.992 -7.000 0.381 0.007 Y NA
 5853346 5853347 HPP12_0041 HPP12_0042 hypE hypF TRUE 0.964 3.000 0.079 1.000 Y NA
 5853347 5853348 HPP12_0042 HPP12_0043 hypF   TRUE 0.851 -24.000 0.023 1.000 N NA
 5853348 5853349 HPP12_0043 HPP12_0044   dpnA TRUE 0.604 59.000 0.061 1.000 N NA
 5853349 5853350 HPP12_0044 HPP12_0045 dpnA ddeM TRUE 0.992 -3.000 0.192 0.019 Y NA
 5853350 5853351 HPP12_0045 HPP12_0046 ddeM   TRUE 0.975 -3.000 0.364 1.000   NA
 5853351 5853352 HPP12_0046 HPP12_0047     FALSE 0.068 144.000 0.000 NA   NA
 5853352 5853353 HPP12_0047 HPP12_0048     TRUE 0.805 0.000 0.000 NA   NA
 5853353 5853354 HPP12_0048 HPP12_0049   putP TRUE 0.651 40.000 0.017 1.000 N NA
 5853354 5853355 HPP12_0049 HPP12_0050 putP putA TRUE 0.845 27.000 0.141 1.000 N NA
 5853356 5853357 HPP12_0051 HPP12_0052     FALSE 0.029 301.000 0.000 NA   NA
 5853357 5853358 HPP12_0052 HPP12_0053     FALSE 0.165 72.000 0.000 NA   NA
 5853358 5853359 HPP12_0053 HPP12_0054     TRUE 0.484 -42.000 0.000 NA   NA
 5853359 5853360 HPP12_0054 HPP12_0055     TRUE 0.746 2.000 0.000 NA   NA
 5853360 5853361 HPP12_0055 HPP12_0056     FALSE 0.353 35.000 0.000 NA   NA
 5853361 5853362 HPP12_0056 HPP12_0057     TRUE 0.769 1.000 0.000 NA   NA
 5853362 5853363 HPP12_0057 HPP12_0058     FALSE 0.206 58.000 0.000 NA   NA
 5853363 5853364 HPP12_0058 HPP12_0059     FALSE 0.079 128.000 0.000 NA   NA
 5853364 5853365 HPP12_0059 HPP12_0060     FALSE 0.273 44.000 0.000 NA   NA
 5853365 5853366 HPP12_0060 HPP12_0061     TRUE 0.806 -3.000 0.000 NA   NA
 5853366 5853367 HPP12_0061 HPP12_0062     TRUE 0.939 16.000 0.429 NA   NA
 5853367 5853368 HPP12_0062 HPP12_0063     FALSE 0.118 96.000 0.000 NA   NA
 5853368 5853369 HPP12_0063 HPP12_0064     TRUE 0.806 -3.000 0.000 NA   NA
 5853369 5853370 HPP12_0064 HPP12_0065     TRUE 0.858 -30.000 0.182 NA   NA
 5853370 5853371 HPP12_0065 HPP12_0066     TRUE 0.963 2.000 0.636 NA   NA
 5853371 5853372 HPP12_0066 HPP12_0067     TRUE 0.947 -7.000 0.286 NA   NA
 5853372 5853373 HPP12_0067 HPP12_0068     FALSE 0.064 151.000 0.000 NA   NA
 5853373 5853374 HPP12_0068 HPP12_0069     FALSE 0.126 92.000 0.000 NA   NA
 5853374 5853375 HPP12_0069 HPP12_0070     TRUE 0.960 7.000 0.000 0.004   NA
 5853376 5853377 HPP12_0071 HPP12_0072 ureH ureG TRUE 0.994 0.000 0.337 0.009 Y NA
 5853377 5853378 HPP12_0072 HPP12_0073 ureG ureF TRUE 0.967 29.000 0.439 0.009 Y NA
 5853378 5853379 HPP12_0073 HPP12_0074 ureF ureE TRUE 0.993 12.000 0.460 0.009 Y NA
 5853379 5853380 HPP12_0074 HPP12_0075 ureE ureI TRUE 0.945 2.000 0.096 1.000   NA
 5853380 5853381 HPP12_0075 HPP12_0076 ureI ureB FALSE 0.146 193.000 0.019 1.000   NA
 5853381 5853382 HPP12_0076 HPP12_0077 ureB ureA TRUE 0.988 4.000 0.045 0.002 Y NA
 5853382 5853383 HPP12_0077 HPP12_t06 ureA   FALSE 0.034 251.000 0.000 NA   NA
 5853383 5853384 HPP12_t06 HPP12_0078   lspA TRUE 0.601 19.000 0.000 NA   NA
 5853384 5853385 HPP12_0078 HPP12_0079 lspA   TRUE 0.945 -6.000 0.042 1.000 N NA
 5853386 5853387 HPP12_0080 HPP12_0081 rpsT prfA FALSE 0.373 124.000 0.029 1.000 Y NA
 5853387 5853388 HPP12_0081 HPP12_0082 prfA   FALSE 0.024 389.000 0.000 NA   NA
 5853388 5853389 HPP12_0082 HPP12_0083   horA TRUE 0.962 11.000 0.400 NA   NA
 5853389 5853390 HPP12_0083 HPP12_0084 horA   FALSE 0.034 247.000 0.000 NA   NA
 5853391 5853392 HPP12_0085 HPP12_0086   rpsI FALSE 0.128 228.000 0.012 1.000 N NA
 5853392 5853393 HPP12_0086 HPP12_0087 rpsI rplM TRUE 0.992 -3.000 0.231 0.033 Y NA
 5853393 5853394 HPP12_0087 HPP12_0088 rplM   FALSE 0.028 312.000 0.000 NA   NA
 5853394 5853395 HPP12_0088 HPP12_0089     TRUE 0.946 7.000 0.216 NA   NA
 5853395 5853396 HPP12_0089 HPP12_0090     TRUE 0.546 54.000 0.096 NA   NA
 5853396 5853397 HPP12_0090 HPP12_0091   rpoD TRUE 0.742 21.000 0.017 NA   NA
 5853397 5853398 HPP12_0091 HPP12_0092 rpoD   FALSE 0.150 189.000 0.011 1.000 N NA
 5853398 5853399 HPP12_0092 HPP12_0093   fabD TRUE 0.949 11.000 0.037 1.000 N NA
 5853400 5853401 HPP12_t07 HPP12_0094     FALSE 0.045 205.000 0.000 NA   NA
 5853401 5853402 HPP12_0094 HPP12_0095     TRUE 0.859 50.000 0.347 0.074   NA
 5853403 5853404 HPP12_0096 HPP12_0097     TRUE 0.457 100.000 0.364 NA   NA
 5853406 5853407 HPP12_0099 HPP12_0100   thrC FALSE 0.183 107.000 0.012 NA   NA
 5853408 5853409 HPP12_0101 HPP12_0102 tlpA   TRUE 0.913 0.000 0.024 NA   NA
 5853409 5853410 HPP12_0102 HPP12_0103     FALSE 0.151 119.000 0.010 NA   NA
 5853411 5853412 HPP12_0104 HPP12_0105   tlpB TRUE 0.863 32.000 0.700 NA N NA
 5853412 5853413 HPP12_0105 HPP12_0106 tlpB cpdB FALSE 0.086 212.000 0.000 1.000 N NA
 5853413 5853414 HPP12_0106 HPP12_0107 cpdB   FALSE 0.227 141.000 0.016 1.000 N NA
 5853414 5853415 HPP12_0107 HPP12_0108   metB TRUE 0.740 38.000 0.048 1.000 N NA
 5853415 5853416 HPP12_0108 HPP12_0109 metB cysK TRUE 0.976 25.000 0.690 0.014 Y NA
 5853418 5853419 HPP12_0111 HPP12_0112 dnaK grpE TRUE 0.918 31.000 0.029 0.012 Y NA
 5853419 5853420 HPP12_0112 HPP12_0113 grpE   TRUE 0.956 0.000 0.038 1.000 N NA
 5853421 5853422 HPP12_0114 HPP12_0115     TRUE 0.809 21.000 0.047 NA   NA
 5853423 5853424 HPP12_0116 HPP12_0117   flaB TRUE 0.687 63.000 0.700 NA   NA
 5853425 5853426 HPP12_0118 HPP12_0119 topA-1   TRUE 0.906 -7.000 0.010 1.000 N NA
 5853427 5853428 HPP12_0120 HPP12_0121   ppsA FALSE 0.096 110.000 0.000 NA   NA
 5853429 5853430 HPP12_0122 HPP12_0123   thrS TRUE 0.629 41.000 0.076 NA   NA
 5853430 5853431 HPP12_0123 HPP12_0124 thrS infC TRUE 0.971 -3.000 0.060 1.000 Y NA
 5853431 5853432 HPP12_0124 HPP12_0125 infC rpmI TRUE 0.964 -19.000 0.652 1.000 Y NA
 5853432 5853433 HPP12_0125 HPP12_0126 rpmI rplT TRUE 0.884 94.000 0.928 0.033 Y NA
 5853433 5853434 HPP12_0126 HPP12_0127 rplT horB FALSE 0.070 200.000 0.007 NA   NA
 5853434 5853435 HPP12_0127 HPP12_0128 horB   FALSE 0.025 361.000 0.000 NA   NA
 5853435 5853436 HPP12_0128 HPP12_0129     FALSE 0.024 405.000 0.000 NA   NA
 5853437 5853438 HPP12_0130 HPP12_0131   sdaC TRUE 0.984 0.000 0.350 1.000 Y NA
 5853439 5853440 HPP12_0132 HPP12_0133     FALSE 0.058 290.000 0.012 NA   NA
 5853441 5853442 HPP12_0134 HPP12_0135 bcp   TRUE 0.908 10.000 0.009 1.000   NA
 5853442 5853443 HPP12_0135 HPP12_0136     TRUE 0.986 -7.000 0.209 0.003   NA
 5853443 5853444 HPP12_0136 HPP12_0137     TRUE 0.924 29.000 0.657 1.000 Y NA
 5853445 5853446 HPP12_0138 HPP12_0139 lldP-1 lldP-2 TRUE 0.944 57.000 0.625 0.002 Y NA
 5853447 5853448 HPP12_0140 HPP12_0141   mutY TRUE 0.769 -10.000 0.002 NA   NA
 5853448 5853449 HPP12_0141 HPP12_0142 mutY   FALSE 0.232 118.000 0.008 1.000 N NA
 5853450 5853451 HPP12_0143 HPP12_0144 fixN fixO TRUE 0.990 13.000 0.283 0.004 N NA
 5853451 5853452 HPP12_0144 HPP12_0145 fixO fixQ TRUE 0.994 11.000 0.738 0.004 N NA
 5853452 5853453 HPP12_0145 HPP12_0146 fixQ fixP TRUE 0.989 2.000 0.262 0.004 N NA
 5853453 5853454 HPP12_0146 HPP12_0147 fixP   TRUE 0.971 11.000 0.727 NA   NA
 5853454 5853455 HPP12_0147 HPP12_0148     TRUE 0.454 101.000 0.375 NA   NA
 5853455 5853456 HPP12_0148 HPP12_0149     TRUE 0.961 12.000 0.438 NA   NA
 5853456 5853457 HPP12_0149 HPP12_0150     TRUE 0.534 87.000 0.429 NA   NA
 5853459 5853460 HPP12_0152 HPP12_0153 recA eno TRUE 0.945 12.000 0.033 1.000 N NA
 5853460 5853461 HPP12_0153 HPP12_0154 eno   TRUE 0.918 -7.000 0.080 NA   NA
 5853461 5853462 HPP12_0154 HPP12_0155     TRUE 0.949 17.000 0.788 NA   NA
 5853462 5853463 HPP12_0155 HPP12_0156   aroK TRUE 0.936 5.000 0.127 NA   NA
 5853463 5853464 HPP12_0156 HPP12_0157 aroK   TRUE 0.814 22.000 0.078 NA   NA
 5853467 5853468 HPP12_0160 HPP12_0161   hemB TRUE 0.861 1.000 0.010 NA   NA
 5853468 5853469 HPP12_0161 HPP12_0162 hemB   TRUE 0.944 10.000 0.028 1.000 N NA
 5853469 5853470 HPP12_0162 HPP12_0163   ompR TRUE 0.922 26.000 0.448 1.000 Y NA
 5853470 5853471 HPP12_0163 HPP12_0164 ompR   FALSE 0.037 236.000 0.000 NA   NA
 5853471 5853472 HPP12_0164 HPP12_0165     TRUE 0.887 -21.000 0.233 NA   NA
 5853472 5853473 HPP12_0165 HPP12_0166     TRUE 0.673 30.000 0.018 1.000   NA
 5853473 5853474 HPP12_0166 HPP12_0167     TRUE 0.917 3.000 0.068 NA   NA
 5853474 5853475 HPP12_0167 HPP12_0168   prfB FALSE 0.283 70.000 0.011 NA   NA
 5853475 5853476 HPP12_0168 HPP12_0169 prfB moeA TRUE 0.427 61.000 0.007 1.000 N NA
 5853476 5853477 HPP12_0169 HPP12_0170 moeA fliR TRUE 0.958 10.000 0.069 1.000 N NA
 5853477 5853478 HPP12_0170 HPP12_0171 fliR   TRUE 0.975 -6.000 0.069 0.061   NA
 5853479 5853480 HPP12_0172 HPP12_0173   fba TRUE 0.932 17.000 0.121 1.000 N NA
 5853480 5853481 HPP12_0173 HPP12_0174 fba efp TRUE 0.803 22.000 0.012 1.000 N NA
 5853483 5853484 HPP12_0176 HPP12_0177     TRUE 0.775 9.000 0.000 NA   NA
 5853485 5853486 HPP12_0178 HPP12_0179     TRUE 0.927 4.000 0.018 1.000 N NA
 5853486 5853487 HPP12_0179 HPP12_0180     TRUE 0.947 -3.000 0.020 1.000 N NA
 5853488 5853489 HPP12_0181 HPP12_0182   lysS TRUE 0.929 10.000 0.023 1.000   NA
 5853489 5853490 HPP12_0182 HPP12_0183 lysS glyA TRUE 0.957 0.000 0.044 1.000 N NA
 5853490 5853491 HPP12_0183 HPP12_0184 glyA   TRUE 0.955 11.000 0.271 NA   NA
 5853491 5853492 HPP12_0184 HPP12_0185     TRUE 0.868 22.000 0.258 NA   NA
 5853493 5853494 HPP12_0186 HPP12_0187     FALSE 0.317 40.000 0.000 NA   NA
 5853494 5853495 HPP12_0187 HPP12_0188     TRUE 0.769 1.000 0.000 NA   NA
 5853495 5853496 HPP12_0188 HPP12_0189     TRUE 0.656 -13.000 0.000 NA   NA
 5853498 5853499 HPP12_0191 HPP12_0192   frdB TRUE 0.823 22.000 0.019 1.000 N NA
 5853499 5853500 HPP12_0192 HPP12_0193 frdB frdA TRUE 0.984 -7.000 0.025 0.003 Y NA
 5853500 5853501 HPP12_0193 HPP12_0194 frdA frdC TRUE 0.994 10.000 0.276 0.003 Y NA
 5853502 5853503 HPP12_0195 HPP12_0196   fabI TRUE 0.982 10.000 0.071 0.039 N NA
 5853503 5853504 HPP12_0196 HPP12_0197 fabI lpxD TRUE 0.945 0.000 0.018 1.000 N NA
 5853504 5853505 HPP12_0197 HPP12_0198 lpxD metK TRUE 0.450 65.000 0.011 1.000 N NA
 5853505 5853506 HPP12_0198 HPP12_0199 metK ndk TRUE 0.431 67.000 0.010 1.000 N NA
 5853506 5853507 HPP12_0199 HPP12_0200 ndk   TRUE 0.681 26.000 0.033 NA   NA
 5853507 5853508 HPP12_0200 HPP12_0201   rpmF TRUE 0.858 16.000 0.032 NA   NA
 5853508 5853509 HPP12_0201 HPP12_0202 rpmF plsX TRUE 0.683 67.000 0.418 1.000   NA
 5853509 5853510 HPP12_0202 HPP12_0203 plsX fabH TRUE 0.950 25.000 0.058 0.009 Y NA
 5853510 5853511 HPP12_0203 HPP12_0204 fabH   TRUE 0.864 21.000 0.154 NA   NA
 5853512 5853513 HPP12_0205 HPP12_0206     TRUE 0.782 16.000 0.009 NA   NA
 5853513 5853514 HPP12_0206 HPP12_0207     TRUE 0.551 -27.000 0.000 NA   NA
 5853516 5853517 HPP12_0210 HPP12_0211 hofA htpG FALSE 0.246 103.000 0.010 1.000   NA
 5853518 5853519 HPP12_0212 HPP12_0213 hcpA dapE FALSE 0.338 81.000 0.013 1.000   NA
 5853519 5853520 HPP12_0213 HPP12_0214 dapE gidA TRUE 0.923 11.000 0.010 1.000 N NA
 5853521 5853522 HPP12_0215 HPP12_0216   cdsA TRUE 0.957 13.000 0.008 0.089 N NA
 5853522 5853523 HPP12_0216 HPP12_0217 cdsA   TRUE 0.980 1.000 0.372 1.000 Y NA
 5853523 5853524 HPP12_0217 HPP12_0218     FALSE 0.307 51.000 0.002 NA   NA
 5853526 5853527 HPP12_0220 HPP12_0221     FALSE 0.261 170.000 0.103 1.000   NA
 5853527 5853528 HPP12_0221 HPP12_0222     TRUE 0.868 22.000 0.056 1.000 N NA
 5853528 5853529 HPP12_0222 HPP12_0223     FALSE 0.098 253.000 0.015 1.000   NA
 5853529 5853530 HPP12_0223 HPP12_0224   radA FALSE 0.197 112.000 0.007 1.000   NA
 5853530 5853531 HPP12_0224 HPP12_0225 radA   FALSE 0.281 124.000 0.008 1.000 Y NA
 5853532 5853533 HPP12_0226 HPP12_0227   hopM FALSE 0.042 213.000 0.000 NA   NA
 5853535 5853536 HPP12_t08 HPP12_0229   hopA FALSE 0.076 130.000 0.000 NA   NA
 5853536 5853537 HPP12_0229 HPP12_0230 hopA kdsB FALSE 0.101 187.000 0.016 NA   NA
 5853538 5853539 HPP12_0231 HPP12_0232     TRUE 0.926 16.000 0.258 NA   NA
 5853539 5853540 HPP12_0232 HPP12_0233     TRUE 0.898 24.000 0.763 NA   NA
 5853540 5853541 HPP12_0233 HPP12_0234     TRUE 0.957 0.000 0.211 NA   NA
 5853542 5853543 HPP12_0235 HPP12_0236 hcpE   TRUE 0.493 93.000 0.167 1.000   NA
 5853543 5853544 HPP12_0236 HPP12_0237   hemC TRUE 0.914 0.000 0.008 1.000   NA
 5853544 5853545 HPP12_0237 HPP12_0238 hemC proS TRUE 0.925 11.000 0.010 1.000 N NA
 5853545 5853546 HPP12_0238 HPP12_0239 proS hemA TRUE 0.975 4.000 0.040 0.054 N NA
 5853546 5853547 HPP12_0239 HPP12_0240 hemA ispB TRUE 0.970 0.000 0.051 1.000 Y NA
 5853547 5853548 HPP12_0240 HPP12_0241 ispB   TRUE 0.890 10.000 0.017 NA   NA
 5853548 5853549 HPP12_0241 HPP12_0242     TRUE 0.947 -7.000 0.286 NA   NA
 5853549 5853550 HPP12_0242 HPP12_0243   napA TRUE 0.855 21.000 0.121 NA   NA
 5853550 5853551 HPP12_0243 HPP12_0244 napA   FALSE 0.090 206.000 0.000 1.000 N NA
 5853551 5853552 HPP12_0244 HPP12_0245     TRUE 0.967 -3.000 0.406 NA   NA
 5853552 5853553 HPP12_0245 HPP12_0246   flgI TRUE 0.972 -3.000 0.569 NA   NA
 5853554 5853555 HPP12_0247 HPP12_0248 deaD   TRUE 0.907 21.000 0.119 1.000 N NA
 5853555 5853556 HPP12_0248 HPP12_0249     TRUE 0.936 7.000 0.119 NA   NA
 5853557 10784749 HPP12_0250 HPP12_0251     TRUE 0.783 10.000 0.000 NA   NA
 10784749 5853558 HPP12_0251 HPP12_t09     FALSE 0.094 112.000 0.000 NA   NA
 5853559 5853560 HPP12_0252 HPP12_0253 hopF hopG TRUE 0.959 13.000 0.500 NA   NA
 5853560 5853561 HPP12_0253 HPP12_0254 hopG purA FALSE 0.184 98.000 0.009 NA   NA
 5853561 5853562 HPP12_0254 HPP12_0255 purA   TRUE 0.878 -3.000 0.009 NA   NA
 5853562 5853563 HPP12_0255 HPP12_0256     TRUE 0.922 -7.000 0.093 NA   NA
 5853563 5853564 HPP12_0256 HPP12_0257     TRUE 0.920 -3.000 0.010 1.000   NA
 5853564 5853565 HPP12_0257 HPP12_0258   xseA TRUE 0.913 13.000 0.011 1.000 N NA
 5853566 5853567 HPP12_0259 HPP12_0260 mod-1   TRUE 0.964 -7.000 0.727 NA   NA
 5853568 5853569 HPP12_0261 HPP12_0262   hpaim FALSE 0.351 90.000 0.062 NA   NA
 5853569 5853570 HPP12_0262 HPP12_0263 hpaim clpB TRUE 0.595 73.000 0.216 1.000   NA
 5853570 5853571 HPP12_0263 HPP12_0264 clpB ccdA TRUE 0.667 57.000 0.216 1.000   NA
 5853571 5853572 HPP12_0264 HPP12_0265 ccdA pyrC-1 TRUE 0.933 10.000 0.014 1.000 N NA
 5853572 5853573 HPP12_0265 HPP12_0266 pyrC-1   TRUE 0.893 -15.000 0.011 1.000 Y NA
 5853573 5853574 HPP12_0266 HPP12_0267     TRUE 0.476 61.000 0.066 NA   NA
 5853574 5853575 HPP12_0267 HPP12_0268     TRUE 0.914 10.000 0.033 NA   NA
 5853575 5853576 HPP12_0268 HPP12_0269     TRUE 0.574 39.000 0.029 NA   NA
 5853576 5853577 HPP12_0269 HPP12_0270     TRUE 0.955 -7.000 0.462 NA   NA
 5853577 5853578 HPP12_0270 HPP12_0271     TRUE 0.966 -10.000 1.000 NA   NA
 5853578 5853579 HPP12_0271 HPP12_0272     TRUE 0.962 -3.000 0.276 NA   NA
 5853579 5853580 HPP12_0272 HPP12_0273     TRUE 0.896 16.000 0.087 NA   NA
 5853580 5853581 HPP12_0273 HPP12_0274     TRUE 0.600 37.000 0.033 NA   NA
 5853581 5853582 HPP12_0274 HPP12_0275     TRUE 0.781 -12.000 0.000 1.000   NA
 5853582 5853583 HPP12_0275 HPP12_0276     FALSE 0.332 57.000 0.010 NA   NA
 5853583 5853584 HPP12_0276 HPP12_0277     TRUE 0.975 10.000 0.806 NA   NA
 5853584 5853585 HPP12_0277 HPP12_0278     TRUE 0.980 -3.000 0.429 1.000 N NA
 5853585 5853586 HPP12_0278 HPP12_0279     TRUE 0.981 -3.000 0.231 1.000 Y NA
 5853588 5853589 HPP12_0281 HPP12_0282   aroB TRUE 0.928 5.000 0.031 1.000   NA
 5853589 5853590 HPP12_0282 HPP12_0283 aroB   TRUE 0.931 -9.000 0.041 1.000 N NA
 5853590 5853591 HPP12_0283 HPP12_0284     TRUE 0.962 -3.000 0.063 1.000 N NA
 5853591 5853592 HPP12_0284 HPP12_0285   ftsH-1 TRUE 0.923 -13.000 0.067 1.000 N NA
 5853592 5853593 HPP12_0285 HPP12_0286 ftsH-1   TRUE 0.943 3.000 0.237 NA   NA
 5853593 5853594 HPP12_0286 HPP12_0287     TRUE 0.927 13.000 0.100 NA   NA
 5853594 5853595 HPP12_0287 HPP12_0288     TRUE 0.530 67.000 0.172 NA   NA
 5853595 5853596 HPP12_0288 HPP12_0289   lysA TRUE 0.455 48.000 0.008 1.000   NA
 5853596 5853597 HPP12_0289 HPP12_0290 lysA   TRUE 0.937 5.000 0.009 1.000 Y NA
 5853597 5853598 HPP12_0290 HPP12_0291     TRUE 0.909 13.000 0.053 NA   NA
 5853598 5853599 HPP12_0291 HPP12_0292   pabB TRUE 0.890 1.000 0.021 NA   NA
 5853599 5853600 HPP12_0292 HPP12_0293 pabB amiE FALSE 0.154 193.000 0.024 1.000   NA
 5853602 5853603 HPP12_0295 HPP12_0296 rplU rpmA TRUE 0.992 14.000 0.667 0.031 Y NA
 5853603 5853604 HPP12_0296 HPP12_0297 rpmA dppA FALSE 0.220 117.000 0.006 1.000 N NA
 5853604 5853605 HPP12_0297 HPP12_0298 dppA dppB TRUE 0.985 11.000 0.041 0.029 Y NA
 5853605 5853606 HPP12_0298 HPP12_0299 dppB dppC TRUE 0.995 0.000 0.779 0.029 Y NA
 5853606 5853607 HPP12_0299 HPP12_0300 dppC dppD TRUE 0.965 12.000 0.060 1.000 Y NA
 5853607 5853608 HPP12_0300 HPP12_0301 dppD dppF TRUE 0.988 -3.000 0.087 0.003   NA
 5853608 5853609 HPP12_0301 HPP12_0302 dppF obgE TRUE 0.778 20.000 0.008 1.000   NA
 5853609 5853610 HPP12_0302 HPP12_0303 obgE   FALSE 0.116 182.000 0.007 1.000   NA
 5853610 5853611 HPP12_0303 HPP12_0304     FALSE 0.036 240.000 0.000 NA   NA
 5853611 5853612 HPP12_0304 HPP12_0305   hemL TRUE 0.947 10.000 0.154 NA   NA
 5853612 5853613 HPP12_0305 HPP12_0306 hemL   TRUE 0.960 6.000 0.462 NA   NA
 5853613 5853614 HPP12_0306 HPP12_0307     TRUE 0.932 16.000 0.308 NA   NA
 5853614 5853615 HPP12_0307 HPP12_0308     TRUE 0.631 84.000 0.800 NA   NA
 5853615 5853616 HPP12_0308 HPP12_0309     TRUE 0.988 13.000 0.276 0.004   NA
 5853616 5853617 HPP12_0309 HPP12_0310     TRUE 0.737 46.000 0.517 NA   NA
 5853617 5853618 HPP12_0310 HPP12_0311     TRUE 0.977 0.000 0.788 NA   NA
 5853619 5853620 HPP12_0312 HPP12_0313     FALSE 0.113 99.000 0.000 NA   NA
 5853620 10784750 HPP12_0313 HPP12_0314     FALSE 0.020 618.000 0.000 NA   NA
 10784750 5853621 HPP12_0314 HPP12_0315     FALSE 0.030 297.000 0.000 NA   NA
 5853621 5853622 HPP12_0315 HPP12_0316   argS TRUE 0.411 61.000 0.004 1.000 N NA
 5853622 5853623 HPP12_0316 HPP12_0317 argS tatA TRUE 0.925 3.000 0.020 1.000 N NA
 5853623 5853624 HPP12_0317 HPP12_0318 tatA gmk TRUE 0.423 70.000 0.011 1.000 N NA
 5853624 5853625 HPP12_0318 HPP12_0319 gmk   TRUE 0.809 -7.000 0.005 NA   NA
 5853628 5853629 HPP12_0322 HPP12_0323 flgH   TRUE 0.923 18.000 0.109 1.000 N NA
 5853629 5853630 HPP12_0323 HPP12_0324     TRUE 0.992 -9.000 0.355 0.002 Y NA
 5853630 5853631 HPP12_0324 HPP12_0325   flaG-1 TRUE 0.970 -3.000 0.137 1.000 N NA
 5853632 5853633 HPP12_0326 HPP12_0327 lpxK nadE TRUE 0.949 -3.000 0.024 1.000 N NA
 5853634 10340471 HPP12_t10 HPP12_1582   ilvC FALSE 0.134 88.000 0.000 NA   NA
 10340471 5853635 HPP12_1582 HPP12_0328 ilvC minD TRUE 0.763 24.000 0.012 1.000 N NA
 5853635 5853636 HPP12_0328 HPP12_0329 minD minE TRUE 0.983 -3.000 0.618 NA Y NA
 5853636 5853637 HPP12_0329 HPP12_0330 minE dprA TRUE 0.881 7.000 0.010 NA N NA
 5853637 5853638 HPP12_0330 HPP12_0331 dprA   TRUE 0.964 -3.000 0.026 1.000 Y NA
 5853638 5853639 HPP12_0331 HPP12_0332   hcpH FALSE 0.157 133.000 0.005 1.000   NA
 5853639 5853640 HPP12_0332 HPP12_0333 hcpH   FALSE 0.288 187.000 0.500 NA   NA
 5853640 5853641 HPP12_0333 HPP12_0334     TRUE 0.951 -16.000 1.000 NA   NA
 5853641 5853642 HPP12_0334 HPP12_0335     TRUE 0.728 30.000 0.108 NA   NA
 5853642 5853643 HPP12_0335 HPP12_0336     TRUE 0.893 -12.000 0.081 NA   NA
 5853643 5853644 HPP12_0336 HPP12_0337     FALSE 0.024 390.000 0.000 NA   NA
 5853644 5853645 HPP12_0337 HPP12_0338     FALSE 0.129 149.000 0.014 NA   NA
 5853645 5853646 HPP12_0338 HPP12_0339     TRUE 0.611 -16.000 0.000 NA   NA
 5853646 5853647 HPP12_0339 HPP12_0340     FALSE 0.054 176.000 0.000 NA   NA
 5853648 5853649 HPP12_0341 HPP12_0342   recJ TRUE 0.934 0.000 0.010 1.000 N NA
 5853649 5853650 HPP12_0342 HPP12_0343 recJ pyrG TRUE 0.940 9.000 0.026 1.000 N NA
 5853651 5853652 HPP12_0344 HPP12_0345   fliF TRUE 0.607 44.000 0.032 1.000   NA
 5853652 5853653 HPP12_0345 HPP12_0346 fliF fliG TRUE 0.986 18.000 0.477 0.012 Y NA
 5853653 5853654 HPP12_0346 HPP12_0347 fliG fliH TRUE 0.952 -13.000 0.308 NA Y NA
 5853654 5853655 HPP12_0347 HPP12_0348 fliH dxs TRUE 0.923 3.000 0.052 NA N NA
 5853655 5853656 HPP12_0348 HPP12_0349 dxs lepA TRUE 0.927 -3.000 0.008 1.000 N NA
 5853656 5853657 HPP12_0349 HPP12_0350 lepA   FALSE 0.283 58.000 0.007 NA   NA
 5853657 5853658 HPP12_0350 HPP12_0351     TRUE 0.835 -57.000 0.250 NA   NA
 5853659 5853660 HPP12_0352 HPP12_0353 flgG-1 kgtP TRUE 0.596 54.000 0.066 1.000   NA
 5853660 5853661 HPP12_0353 HPP12_0354 kgtP ftsK FALSE 0.138 260.000 0.000 0.058   NA
 5853661 5853662 HPP12_0354 HPP12_0355 ftsK   TRUE 0.985 -3.000 0.096 0.068 N NA
 5853662 5853663 HPP12_0355 HPP12_0356   tktA TRUE 0.972 -3.000 0.169 1.000 N NA
 5853663 5853664 HPP12_0356 HPP12_0357 tktA   TRUE 0.560 47.000 0.013 1.000 N NA
 5853664 5853665 HPP12_0357 HPP12_0358     TRUE 0.809 -34.000 0.018 1.000 N NA
 5853665 5853666 HPP12_0358 HPP12_0359     TRUE 0.900 0.000 0.016 NA   NA
 5853667 5853668 HPP12_0360 HPP12_0361 pyrB hofB FALSE 0.054 255.000 0.000 1.000   NA
 5853668 5853669 HPP12_0361 HPP12_0362 hofB msbA FALSE 0.339 91.000 0.020 1.000   NA
 5853669 5853670 HPP12_0362 HPP12_0363 msbA   TRUE 0.883 -6.000 0.020 NA   NA
 5853670 5853671 HPP12_0363 HPP12_0364     TRUE 0.922 4.000 0.072 NA   NA
 5853671 5853672 HPP12_0364 HPP12_0365     FALSE 0.264 111.000 0.054 NA   NA
 5853672 5853673 HPP12_0365 HPP12_0366     TRUE 0.969 -7.000 0.833 NA   NA
 5853673 5853674 HPP12_0366 HPP12_0367   nixA TRUE 0.516 58.000 0.090 NA   NA
 5853677 5853678 HPP12_0370 HPP12_0371   copP FALSE 0.037 234.000 0.000 NA   NA
 5853678 5853679 HPP12_0371 HPP12_0372 copP copA TRUE 0.996 1.000 0.875 0.002 Y NA
 5853679 5853680 HPP12_0372 HPP12_0373 copA pssA TRUE 0.939 -3.000 0.013 1.000 N NA
 5853680 5853681 HPP12_0373 HPP12_0374 pssA   TRUE 0.804 -10.000 0.009 NA   NA
 5853681 5853682 HPP12_0374 HPP12_0375   ftsH-2 TRUE 0.928 3.000 0.109 NA   NA
 5853682 5853683 HPP12_0375 HPP12_0376 ftsH-2 prmA TRUE 0.892 18.000 0.032 1.000 N NA
 5853683 5853684 HPP12_0376 HPP12_0377 prmA cheY TRUE 0.941 1.000 0.029 1.000 N NA
 5853686 5853687 HPP12_t11 HPP12_0379     FALSE 0.157 75.000 0.000 NA   NA
 5853687 5853688 HPP12_0379 HPP12_0380     TRUE 0.950 3.000 0.304 NA   NA
 5853688 5853689 HPP12_0380 HPP12_0381   gidB TRUE 0.872 -6.000 0.015 NA   NA
 5853689 5853690 HPP12_0381 HPP12_0382 gidB queA TRUE 0.941 -3.000 0.015 1.000 N NA
 5853690 5853691 HPP12_0382 HPP12_0383 queA tatB TRUE 0.925 1.000 0.036 NA N NA
 5853691 5853692 HPP12_0383 HPP12_0384 tatB tatC TRUE 0.974 -7.000 0.535 NA Y NA
 5853692 5853693 HPP12_0384 HPP12_0385 tatC ruvB FALSE 0.404 68.000 0.008 1.000 N NA
 5853693 5853694 HPP12_0385 HPP12_0386 ruvB panB TRUE 0.939 1.000 0.027 1.000 N NA
 5853695 5853696 HPP12_0387 HPP12_0388     TRUE 0.959 -10.000 0.778 NA   NA
 5853696 5853697 HPP12_0388 HPP12_0389     TRUE 0.977 9.000 1.000 NA   NA
 5853697 5853698 HPP12_0389 HPP12_0390     TRUE 0.956 10.000 0.273 NA   NA
 5853698 5853699 HPP12_0390 HPP12_0391     TRUE 0.910 3.000 0.030 NA N NA
 5853699 5853700 HPP12_0391 HPP12_0392   lpxC TRUE 0.951 -3.000 0.027 1.000 N NA
 5853700 5853701 HPP12_0392 HPP12_0393 lpxC   TRUE 0.804 22.000 0.035 NA N NA
 5853701 5853702 HPP12_0393 HPP12_0394   thrB TRUE 0.501 54.000 0.032 NA N NA
 5853702 5853703 HPP12_0394 HPP12_0395 thrB   TRUE 0.823 -28.000 0.044 NA N NA
 5853703 5853704 HPP12_0395 HPP12_0396   infB TRUE 0.962 -3.000 0.171 NA N NA
 5853704 5853705 HPP12_0396 HPP12_0397 infB rbfA TRUE 0.986 0.000 0.530 1.000 Y NA
 5853705 5853706 HPP12_0397 HPP12_0398 rbfA   TRUE 0.892 -7.000 0.033 NA   NA
 5853708 5853709 HPP12_0400 HPP12_0401     FALSE 0.041 378.000 0.000 1.000   NA
 5853710 5853711 HPP12_0402 HPP12_0403   flhA TRUE 0.782 31.000 0.106 1.000   NA
 5853712 5853713 HPP12_0404 HPP12_0405 rpsO   TRUE 0.549 30.000 0.007 NA N NA
 5853713 5853714 HPP12_0405 HPP12_0406     FALSE 0.178 129.000 0.014 NA N NA
 5853714 5853715 HPP12_0406 HPP12_0407     TRUE 0.967 14.000 0.168 1.000 Y NA
 5853715 5853716 HPP12_0407 HPP12_0408   folK TRUE 0.955 -3.000 0.033 1.000 N NA
 5853716 5853717 HPP12_0408 HPP12_0409 folK flhF TRUE 0.955 -3.000 0.035 1.000 N NA
 5853717 5853718 HPP12_0409 HPP12_0410 flhF   TRUE 0.979 -3.000 0.382 1.000 N NA
 5853718 5853719 HPP12_0410 HPP12_0411     TRUE 0.940 5.000 0.159 NA   NA
 5853719 5853720 HPP12_0411 HPP12_0412   fliA TRUE 0.856 -22.000 0.112 NA   NA
 5853720 5853721 HPP12_0412 HPP12_0413 fliA fliM TRUE 0.955 -7.000 0.118 1.000 N NA
 5853721 5853722 HPP12_0413 HPP12_0414 fliM fliY TRUE 0.991 4.000 0.142 0.003 Y NA
 5853722 5853723 HPP12_0414 HPP12_0415 fliY   TRUE 0.796 29.000 0.170 NA N NA
 5853723 5853724 HPP12_0415 HPP12_0416     TRUE 0.968 -3.000 0.421 NA   NA
 5853725 5853726 HPP12_0417 HPP12_0418 fur rarA FALSE 0.176 160.000 0.009 1.000 N NA
 5853726 5853727 HPP12_0418 HPP12_0419 rarA hspR TRUE 0.982 -3.000 0.013 0.005 N NA
 5853727 5853728 HPP12_0419 HPP12_0420 hspR   TRUE 0.970 10.000 0.211 1.000 N NA
 5853730 5853731 HPP12_0422 HPP12_0423     FALSE 0.161 255.000 0.000 0.067 N NA
 5853731 5853732 HPP12_0423 HPP12_0424     TRUE 0.839 22.000 0.027 1.000 N NA
 5853732 5853733 HPP12_0424 HPP12_0425     TRUE 0.799 22.000 0.011 1.000 N NA
 5853733 5853734 HPP12_0425 HPP12_0426     TRUE 0.760 45.000 0.206 1.000 N NA
 5853734 5853735 HPP12_0426 HPP12_0427   pgsA FALSE 0.239 214.000 0.003 0.056 N NA
 5853735 5853736 HPP12_0427 HPP12_0428 pgsA   TRUE 0.600 -66.000 0.009 NA   NA
 5853736 5853737 HPP12_0428 HPP12_0429     TRUE 0.945 10.000 0.132 NA   NA
 5853737 5853738 HPP12_0429 HPP12_0430   dapA TRUE 0.975 -3.000 0.238 1.000 N NA
 5853738 5853739 HPP12_0430 HPP12_0431 dapA   TRUE 0.948 15.000 0.217 1.000   NA
 5853739 5853740 HPP12_0431 HPP12_0432   pyrD TRUE 0.951 -3.000 0.048 1.000   NA
 5853740 5853741 HPP12_0432 HPP12_0433 pyrD ppk TRUE 0.641 39.000 0.013 1.000 N NA
 5853741 5853742 HPP12_0433 HPP12_t12 ppk   FALSE 0.119 95.000 0.000 NA   NA
 5853742 5853743 HPP12_t12 HPP12_0434   hsdS-1 FALSE 0.021 488.000 0.000 NA   NA
 5853743 5853744 HPP12_0434 HPP12_0435 hsdS-1 hsdM-1 TRUE 0.985 -7.000 0.150 0.067 Y NA
 5853744 10784751 HPP12_0435 HPP12_0436 hsdM-1   TRUE 0.739 -7.000 0.000 NA   NA
 5853746 5853747 HPP12_0438 HPP12_0439   virb6 FALSE 0.163 73.000 0.000 NA   NA
 5853747 5853748 HPP12_0439 HPP12_0440 virb6   TRUE 0.510 -34.000 0.000 NA   NA
 5853748 5853749 HPP12_0440 HPP12_0441     TRUE 0.703 52.000 0.500 NA   NA
 5853749 5853750 HPP12_0441 HPP12_0442     TRUE 0.971 4.000 0.833 NA   NA
 5853750 5853751 HPP12_0442 HPP12_0443     FALSE 0.041 214.000 0.000 NA   NA
 5853751 5853752 HPP12_0443 HPP12_0444     FALSE 0.361 133.000 0.400 NA   NA
 5853752 5853753 HPP12_0444 HPP12_0445     TRUE 0.423 -157.000 0.000 NA   NA
 5853753 5853754 HPP12_0445 HPP12_0446     TRUE 0.962 7.000 0.500 NA   NA
 5853755 5853756 HPP12_0447 HPP12_0448   parA FALSE 0.066 263.000 0.000 1.000 N NA
 5853756 5853757 HPP12_0448 HPP12_0449 parA   TRUE 0.623 82.000 0.750 NA   NA
 5853757 5853758 HPP12_0449 HPP12_0450     TRUE 0.867 32.000 0.875 NA   NA
 5853760 5853761 HPP12_0452 HPP12_0453     TRUE 0.952 -7.000 0.400 NA   NA
 5853762 5853763 HPP12_0454 HPP12_0455 virD4-1   TRUE 0.727 47.000 0.500 NA   NA
 5853763 5853764 HPP12_0455 HPP12_0456     TRUE 0.972 1.000 0.800 NA   NA
 5853764 5853765 HPP12_0456 HPP12_0457     TRUE 0.981 -3.000 1.000 NA   NA
 5853765 5853766 HPP12_0457 HPP12_0458   virB11-1 TRUE 0.973 -3.000 0.600 NA   NA
 5853766 5853767 HPP12_0458 HPP12_0459 virB11-1   TRUE 0.977 0.000 0.800 NA   NA
 5853767 5853768 HPP12_0459 HPP12_0460     TRUE 0.967 -3.000 0.400 NA   NA
 5853768 5853769 HPP12_0460 HPP12_0461     TRUE 0.961 -7.000 0.600 NA   NA
 5853769 5853770 HPP12_0461 HPP12_0462   virB10-1 TRUE 0.578 70.000 0.333 NA   NA
 5853770 5853771 HPP12_0462 HPP12_0463 virB10-1 virB9-1 TRUE 0.972 0.000 0.571 NA   NA
 5853771 5853772 HPP12_0463 HPP12_0464 virB9-1 virB8-1 TRUE 0.985 0.000 0.750 NA Y NA
 5853772 5853773 HPP12_0464 HPP12_0465 virB8-1 virB7-1 TRUE 0.755 4.000 0.000 NA   NA
 5853773 10784752 HPP12_0465 HPP12_0466 virB7-1   TRUE 0.806 -3.000 0.000 NA   NA
 10784752 5853774 HPP12_0466 HPP12_0468   virB3-1 FALSE 0.019 2418.000 0.000 NA   NA
 5853774 5853775 HPP12_0468 HPP12_0469 virB3-1 virB2-1 TRUE 0.968 1.000 0.667 NA   NA
 5853775 5853776 HPP12_0469 HPP12_0470 virB2-1   TRUE 0.976 -3.000 0.750 NA   NA
 5853776 5853777 HPP12_0470 HPP12_0471     TRUE 0.657 61.000 0.500 NA   NA
 5853777 5853778 HPP12_0471 HPP12_0472     TRUE 0.962 7.000 0.500 NA   NA
 5853778 5853779 HPP12_0472 HPP12_0473     TRUE 0.945 20.000 1.000 NA   NA
 5853779 5853780 HPP12_0473 HPP12_0474     FALSE 0.019 2033.000 0.000 NA   NA
 5853780 5853781 HPP12_0474 HPP12_0475     TRUE 0.654 26.000 0.025 NA   NA
 5853781 5853782 HPP12_0475 HPP12_0476     TRUE 0.918 10.000 0.040 NA   NA
 5853782 5853783 HPP12_0476 HPP12_0477     TRUE 0.891 -34.000 0.500 NA   NA
 5853783 5853784 HPP12_0477 HPP12_0478     TRUE 0.955 12.000 0.294 NA   NA
 5853784 5853785 HPP12_0478 HPP12_0479   pepF TRUE 0.883 -15.000 0.115 NA   NA
 5853785 5853786 HPP12_0479 HPP12_0480 pepF kefB FALSE 0.378 98.000 0.028 1.000 N NA
 5853786 5853787 HPP12_0480 HPP12_0481 kefB horE FALSE 0.027 319.000 0.000 NA   NA
 5853787 5853788 HPP12_0481 HPP12_0482 horE   TRUE 0.685 44.000 0.250 NA   NA
 5853789 5853790 HPP12_0483 HPP12_0484 modA modB TRUE 0.986 22.000 0.660 0.002 Y NA
 5853790 5853791 HPP12_0484 HPP12_0485 modB modD TRUE 0.983 -3.000 0.286 1.000 Y NA
 5853793 5853794 HPP12_0487 HPP12_0488 hopJ   TRUE 0.975 9.000 0.875 NA   NA
 5853794 5853795 HPP12_0488 HPP12_0489     TRUE 0.882 -34.000 0.273 NA N NA
 5853795 5853796 HPP12_0489 HPP12_0490   typA TRUE 0.420 46.000 0.008 NA N NA
 5853796 5853797 HPP12_0490 HPP12_0491 typA   TRUE 0.878 6.000 0.003 1.000   NA
 5853799 5853800 HPP12_0493 HPP12_0494 hofC hofD TRUE 0.965 27.000 0.875 0.015   NA
 5853800 5853801 HPP12_0494 HPP12_0495 hofD   FALSE 0.024 399.000 0.000 NA   NA
 5853801 5853802 HPP12_0495 HPP12_0496     TRUE 0.747 13.000 0.000 NA   NA
 5853802 5853803 HPP12_0496 HPP12_0497     TRUE 0.760 6.000 0.000 NA   NA
 5853804 5853805 HPP12_0498 HPP12_0499   rpmB FALSE 0.197 183.000 0.025 1.000 N NA
 5853805 5853806 HPP12_0499 HPP12_0500 rpmB   FALSE 0.240 100.000 0.008 1.000   NA
 5853807 5853808 HPP12_0501 HPP12_0502 mraY murD TRUE 0.994 2.000 0.647 0.007 Y NA
 5853809 5853810 HPP12_0503 HPP12_0504   ybgC TRUE 0.880 -10.000 0.043 NA   NA
 5853811 5853812 HPP12_0505 HPP12_0506     TRUE 0.994 11.000 0.800 0.002   NA
 5853812 5853813 HPP12_0506 HPP12_0507   pldA TRUE 0.945 15.000 0.184 1.000   NA
 5853813 5853814 HPP12_0507 HPP12_0508 pldA dnaN TRUE 0.450 56.000 0.007 1.000 N NA
 5853814 5853815 HPP12_0508 HPP12_0509 dnaN gyrB TRUE 0.967 13.000 0.114 1.000 Y NA
 5853815 5853816 HPP12_0509 HPP12_0510 gyrB   TRUE 0.468 46.000 0.008 1.000   NA
 5853816 5853817 HPP12_0510 HPP12_0511     TRUE 0.940 -13.000 0.545 NA   NA
 5853817 5853818 HPP12_0511 HPP12_0512     FALSE 0.043 209.000 0.000 NA   NA
 5853818 5853819 HPP12_0512 HPP12_0513     TRUE 0.976 0.000 0.269 1.000 N NA
 5853819 5853820 HPP12_0513 HPP12_0514     TRUE 0.934 11.000 0.083 NA   NA
 5853820 5853821 HPP12_0514 HPP12_0515   glcD TRUE 0.908 2.000 0.053 NA   NA
 5853821 5853822 HPP12_0515 HPP12_0516 glcD dapB TRUE 0.782 22.000 0.009 1.000 N NA
 5853822 5853823 HPP12_0516 HPP12_0517 dapB lpp FALSE 0.026 334.000 0.000 NA   NA
 5853825 5853826 HPP12_0519 HPP12_0520   rplI FALSE 0.260 63.000 0.005 NA   NA
 5853826 5853827 HPP12_0520 HPP12_0521 rplI hslV TRUE 0.940 4.000 0.034 1.000 N NA
 5853827 5853828 HPP12_0521 HPP12_0522 hslV hslU TRUE 0.989 0.000 0.752 1.000 Y NA
 5853828 5853829 HPP12_0522 HPP12_0523 hslU era TRUE 0.951 0.000 0.051 1.000   NA
 5853829 5853830 HPP12_0523 HPP12_0524 era   TRUE 0.950 -3.000 0.125 NA   NA
 5853832 5853833 HPP12_0526 HPP12_0527   cag1 FALSE 0.085 121.000 0.000 NA   NA
 5853833 5853834 HPP12_0527 HPP12_0528 cag1 cag2 FALSE 0.099 108.000 0.000 NA   NA
 5853834 5853835 HPP12_0528 HPP12_0529 cag2 cag3 TRUE 0.968 0.000 0.429 NA   NA
 5853835 5853836 HPP12_0529 HPP12_0530 cag3 cag4 TRUE 0.974 10.000 0.778 NA   NA
 5853837 5853838 HPP12_0531 HPP12_0532 cag5 virB11-2 TRUE 0.982 9.000 0.429 1.000 Y NA
 5853838 5853839 HPP12_0532 HPP12_0533 virB11-2 cagZ TRUE 0.964 5.000 0.583 NA   NA
 5853839 5853840 HPP12_0533 HPP12_0534 cagZ cagY FALSE 0.065 150.000 0.000 NA   NA
 5853840 5853841 HPP12_0534 HPP12_0535 cagY cagX TRUE 0.959 15.000 0.100 1.000 Y NA
 5853841 5853842 HPP12_0535 HPP12_0536 cagX cagW TRUE 0.590 53.000 0.150 NA   NA
 5853842 5853843 HPP12_0536 HPP12_0537 cagW cagV TRUE 0.959 5.000 0.444 NA   NA
 5853844 5853845 HPP12_0538 HPP12_0539 cagU cagT TRUE 0.949 13.000 0.286 NA   NA
 5853846 5853847 HPP12_0540 HPP12_0541 cagS cagQ FALSE 0.022 439.000 0.000 NA   NA
 5853850 5853851 HPP12_0544 HPP12_0545 cagM cagN TRUE 0.967 15.000 1.000 NA   NA
 5853852 5853853 HPP12_0546 HPP12_0547 cagL cagI TRUE 0.806 -3.000 0.000 NA   NA
 5853853 5853854 HPP12_0547 HPP12_0548 cagI cagH TRUE 0.975 11.000 0.857 NA   NA
 5853854 5853855 HPP12_0548 HPP12_0549 cagH cagG TRUE 0.646 17.000 0.000 NA   NA
 5853855 5853856 HPP12_0549 HPP12_0550 cagG cagF FALSE 0.201 59.000 0.000 NA   NA
 5853856 5853857 HPP12_0550 HPP12_0551 cagF cagE TRUE 0.943 2.000 0.231 NA   NA
 5853857 5853858 HPP12_0551 HPP12_0552 cagE cagD TRUE 0.951 9.000 0.231 NA   NA
 5853858 5853859 HPP12_0552 HPP12_0553 cagD cagC TRUE 0.973 2.000 1.000 NA   NA
 5853859 5853860 HPP12_0553 HPP12_0554 cagC cagB FALSE 0.400 146.000 0.714 NA   NA
 5853862 5853863 HPP12_0556 HPP12_0557   rho TRUE 0.683 39.000 0.023 1.000 N NA
 5853864 5853865 HPP12_0558 HPP12_0559 rpmE   TRUE 0.765 25.000 0.031 1.000   NA
 5853865 5853866 HPP12_0559 HPP12_0560     TRUE 0.923 13.000 0.031 1.000   NA
 5853866 5853867 HPP12_0560 HPP12_0561     TRUE 0.895 13.000 0.033 NA   NA
 5853867 5853868 HPP12_0561 HPP12_0562     TRUE 0.979 -3.000 0.882 NA   NA
 5853869 5853870 HPP12_0563 HPP12_0564   accA FALSE 0.023 435.000 0.000 NA   NA
 5853870 5853871 HPP12_0564 HPP12_0565 accA   TRUE 0.881 23.000 0.046 1.000 Y NA
 5853871 5853872 HPP12_0565 HPP12_0566   acpP TRUE 0.500 103.000 0.066 1.000 Y NA
 5853872 5853873 HPP12_0566 HPP12_0567 acpP fabG TRUE 0.615 231.000 0.321 0.008 Y NA
 5853873 5853874 HPP12_0567 HPP12_0568 fabG rpsU TRUE 0.615 39.000 0.017 1.000   NA
 5853874 5853875 HPP12_0568 HPP12_0569 rpsU   FALSE 0.373 101.000 0.154 NA   NA
 5853877 5853878 HPP12_0571 HPP12_0572   dapF FALSE 0.166 107.000 0.009 NA   NA
 5853880 5853881 HPP12_0574 HPP12_0575     FALSE 0.118 135.000 0.009 NA   NA
 5853881 5853882 HPP12_0575 HPP12_0576   pepA TRUE 0.931 2.000 0.026 1.000 N NA
 5853882 5853883 HPP12_0576 HPP12_0577 pepA   TRUE 0.657 48.000 0.250 NA   NA
 5853883 5853884 HPP12_0577 HPP12_0578   apt TRUE 0.862 15.000 0.026 NA   NA
 5853884 5853885 HPP12_0578 HPP12_0579 apt   FALSE 0.411 58.000 0.028 NA   NA
 5853885 5853886 HPP12_0579 HPP12_0580   rpiB TRUE 0.636 54.000 0.277 NA   NA
 5853886 5853887 HPP12_0580 HPP12_0581 rpiB   TRUE 0.853 21.000 0.042 1.000   NA
 5853887 5853888 HPP12_0581 HPP12_0582   lepB TRUE 0.980 9.000 0.055 0.020   NA
 5853888 5853889 HPP12_0582 HPP12_0583 lepB folD TRUE 0.961 1.000 0.117 1.000 N NA
 5853889 5853890 HPP12_0583 HPP12_0584 folD   TRUE 0.439 80.000 0.025 1.000 N NA
 5853890 5853891 HPP12_0584 HPP12_0585     TRUE 0.968 6.000 0.727 NA   NA
 5853891 5853892 HPP12_0585 HPP12_0586     TRUE 0.946 7.000 0.216 NA   NA
 5853892 5853893 HPP12_0586 HPP12_0587   pyrC-2 TRUE 0.785 -24.000 0.018 NA N NA
 5853893 5853894 HPP12_0587 HPP12_0588 pyrC-2   TRUE 0.923 4.000 0.015 1.000 N NA
 5853894 5853895 HPP12_0588 HPP12_0589     TRUE 0.912 -16.000 0.333 NA   NA
 5853895 5853896 HPP12_0589 HPP12_0590   fliN TRUE 0.962 -3.000 0.281 NA   NA
 5853896 5853897 HPP12_0590 HPP12_0591 fliN nth FALSE 0.350 82.000 0.009 1.000 N NA
 5853897 5853898 HPP12_0591 HPP12_0592 nth   TRUE 0.936 -3.000 0.011 1.000 N NA
 5853898 5853899 HPP12_0592 HPP12_0593     TRUE 0.964 -3.000 0.303 NA   NA
 5853900 5853901 HPP12_0594 HPP12_0595 pabC oorD FALSE 0.095 185.000 0.012 NA   NA
 5853901 5853902 HPP12_0595 HPP12_0596 oorD oorA TRUE 0.995 0.000 0.316 0.003 Y NA
 5853902 5853903 HPP12_0596 HPP12_0597 oorA oorB TRUE 0.995 2.000 0.771 0.003 Y NA
 5853903 5853904 HPP12_0597 HPP12_0598 oorB oorC TRUE 0.995 0.000 0.324 0.003 Y NA
 5853904 5853905 HPP12_0598 HPP12_0599 oorC res-1 FALSE 0.342 155.000 0.139 1.000 N NA
 5853905 10784753 HPP12_0599 HPP12_0600 res-1   TRUE 0.806 -3.000 0.000 NA   NA
 10784753 5853906 HPP12_0600 HPP12_0601     FALSE 0.099 108.000 0.000 NA   NA
 5853906 5853907 HPP12_0601 HPP12_0602     TRUE 0.970 10.000 0.667 NA   NA
 5853907 5853908 HPP12_0602 HPP12_0603     FALSE 0.021 476.000 0.000 NA   NA
 5853909 5853910 HPP12_0604 HPP12_0605 pbp-1a bioF TRUE 0.950 1.000 0.050 1.000 N NA
 5853910 5853911 HPP12_0605 HPP12_0606 bioF   TRUE 0.832 23.000 0.033 1.000 N NA
 5853911 5853912 HPP12_0606 HPP12_0607   spab FALSE 0.250 72.000 0.000 1.000   NA
 5853912 5853913 HPP12_0607 HPP12_0608 spab   TRUE 0.637 -34.000 0.000 1.000   NA
 5853914 5853915 HPP12_0609 HPP12_0610 flaA   FALSE 0.282 142.000 0.042 1.000 N NA
 5853915 5853916 HPP12_0610 HPP12_0611     TRUE 0.928 -3.000 0.042 NA   NA
 5853916 5853917 HPP12_0611 HPP12_0612   hemE FALSE 0.280 69.000 0.010 NA   NA
 5853917 5853918 HPP12_0612 HPP12_0613 hemE hefA TRUE 0.921 9.000 0.010 1.000 N NA
 5853918 5853919 HPP12_0613 HPP12_0614 hefA hefB TRUE 0.980 11.000 0.655 1.000 N NA
 5853919 5853920 HPP12_0614 HPP12_0615 hefB hefC TRUE 0.986 13.000 0.844 1.000 Y NA
 5853920 5853921 HPP12_0615 HPP12_0616 hefC   TRUE 0.988 -3.000 0.281 0.052   NA
 5853921 5853922 HPP12_0616 HPP12_0617     TRUE 0.682 151.000 0.600 0.014   NA
 5853922 5853923 HPP12_0617 HPP12_0618     TRUE 0.847 -54.000 0.286 NA   NA
 5853924 5853925 HPP12_0619 HPP12_0620     TRUE 0.972 8.000 0.800 NA   NA
 5853925 5853926 HPP12_0620 HPP12_0621     TRUE 0.931 0.000 0.047 NA   NA
 5853926 5853927 HPP12_0621 HPP12_0622     TRUE 0.726 -16.000 0.000 1.000   NA
 5853927 5853928 HPP12_0622 HPP12_0623     FALSE 0.047 309.000 0.000 1.000   NA
 5853928 5853929 HPP12_0623 HPP12_0624   ligA FALSE 0.141 154.000 0.008 1.000   NA
 5853930 5853931 HPP12_0625 HPP12_0626 cheV-2 aspS TRUE 0.655 35.000 0.010 1.000 N NA
 5853931 5853932 HPP12_0626 HPP12_0627 aspS adk TRUE 0.891 17.000 0.025 1.000 N NA
 5853932 5853933 HPP12_0627 HPP12_0628 adk   TRUE 0.574 25.000 0.000 1.000   NA
 5853933 5853934 HPP12_0628 HPP12_0629   ppa FALSE 0.314 56.000 0.000 1.000   NA
 5853934 5853935 HPP12_0629 HPP12_0630 ppa   FALSE 0.213 76.000 0.004 NA   NA
 5853935 5853936 HPP12_0630 HPP12_0631     TRUE 0.904 17.000 0.182 NA   NA
 5853936 5853937 HPP12_0631 HPP12_0632     FALSE 0.151 79.000 0.000 NA   NA
 5853937 5853938 HPP12_0632 HPP12_0633     TRUE 0.607 -45.000 0.000 1.000   NA
 5853939 5853940 HPP12_0634 HPP12_0635 mutS   TRUE 0.909 -3.000 0.021 NA   NA
 5853940 5853941 HPP12_0635 HPP12_0636   murC TRUE 0.893 0.000 0.013 NA   NA
 5853941 5853942 HPP12_0636 HPP12_0637 murC   TRUE 0.917 -7.000 0.016 1.000 N NA
 5853943 5853944 HPP12_0638 HPP12_0639   dapD TRUE 0.908 3.000 0.009 1.000 N NA
 5853944 5853945 HPP12_0639 HPP12_0640 dapD hcpF TRUE 0.959 12.000 0.164 1.000   NA
 5853945 5853946 HPP12_0640 HPP12_0641 hcpF   FALSE 0.142 233.000 0.100 NA   NA
 5853948 5853949 HPP12_0643 HPP12_0644 hydA hydB TRUE 0.997 10.000 0.951 0.002 Y NA
 5853949 5853950 HPP12_0644 HPP12_0645 hydB hydC TRUE 0.989 13.000 0.270 0.032 Y NA
 5853950 5853951 HPP12_0645 HPP12_0646 hydC hydD TRUE 0.982 -3.000 0.277 1.000 Y NA
 5853951 5853952 HPP12_0646 HPP12_0647 hydD   TRUE 0.937 2.000 0.171 NA   NA
 5853953 5853954 HPP12_0648 HPP12_0649     TRUE 0.484 137.000 1.000 NA   NA
 5853957 5853958 HPP12_0652 HPP12_0653     TRUE 0.845 14.000 0.014 NA   NA
 5853958 5853959 HPP12_0653 HPP12_0654     TRUE 0.893 17.000 0.121 NA   NA
 5853959 5853960 HPP12_0654 HPP12_0655     TRUE 0.928 19.000 0.185 1.000 N NA
 5853960 5853961 HPP12_0655 HPP12_0656   gltX FALSE 0.226 165.000 0.029 1.000 N NA
 5853961 5853962 HPP12_0656 HPP12_0657 gltX   TRUE 0.959 -3.000 0.088 1.000   NA
 5853962 5853963 HPP12_0657 HPP12_0658     TRUE 0.931 9.000 0.080 NA   NA
 5853963 5853964 HPP12_0658 HPP12_0659   galU TRUE 0.964 -3.000 0.323 NA   NA
 5853964 5853965 HPP12_0659 HPP12_0660 galU   TRUE 0.965 12.000 0.533 NA   NA
 5853965 5853966 HPP12_0660 HPP12_0661     TRUE 0.869 3.000 0.017 NA   NA
 5853966 5853967 HPP12_0661 HPP12_0662   aspA TRUE 0.521 58.000 0.020 1.000 N NA
 5853967 5853968 HPP12_0662 HPP12_0663 aspA   TRUE 0.953 6.000 0.071 1.000 N NA
 5853969 5853970 HPP12_0664 HPP12_0665 fucT serB TRUE 0.546 40.000 0.009 1.000   NA
 5853970 5853971 HPP12_0665 HPP12_0666 serB pfr TRUE 0.889 16.000 0.014 1.000 N NA
 5853972 5853973 HPP12_0667 HPP12_0668     FALSE 0.402 83.000 0.018 1.000 N NA
 5853973 5853974 HPP12_0668 HPP12_0669     TRUE 0.937 2.000 0.033 1.000 N NA
 5853974 5853975 HPP12_0669 HPP12_0670     TRUE 0.954 6.000 0.130 1.000   NA
 5853975 5853976 HPP12_0670 HPP12_0671   gatB TRUE 0.919 0.000 0.010 1.000   NA
 5853976 5853977 HPP12_0671 HPP12_0672 gatB   TRUE 0.914 0.000 0.008 1.000   NA
 5853977 5853978 HPP12_0672 HPP12_0673     TRUE 0.952 11.000 0.083 1.000   NA
 5853978 5853979 HPP12_0673 HPP12_0674   rnhA TRUE 0.670 -133.000 0.009 1.000   NA
 5853979 5853980 HPP12_0674 HPP12_0675 rnhA rnc TRUE 0.943 12.000 0.032 1.000 N NA
 5853980 5853981 HPP12_0675 HPP12_0676 rnc aroC TRUE 0.953 -3.000 0.030 1.000 N NA
 5853981 5853982 HPP12_0676 HPP12_0677 aroC   TRUE 0.453 37.000 0.008 NA   NA
 5853982 5853983 HPP12_0677 HPP12_0678   hemN-1 TRUE 0.967 0.000 0.419 NA   NA
 5853983 5853984 HPP12_0678 HPP12_0679 hemN-1 glpC TRUE 0.992 -3.000 0.419 0.018 N NA
 5853984 5853985 HPP12_0679 HPP12_0680 glpC   TRUE 0.504 75.000 0.074 1.000   NA
 5853985 5853986 HPP12_0680 HPP12_0681     TRUE 0.918 -19.000 0.500 NA   NA
 5853986 5853987 HPP12_0681 HPP12_0682     TRUE 0.699 -10.000 0.000 NA   NA
 5853987 5853988 HPP12_0682 HPP12_0683     TRUE 0.960 -3.000 0.250 NA   NA
 5853988 5853989 HPP12_0683 HPP12_0684   horF FALSE 0.346 122.000 0.250 NA   NA
 5853989 5853990 HPP12_0684 HPP12_0685 horF aspB FALSE 0.204 159.000 0.082 NA   NA
 5853990 5853991 HPP12_0685 HPP12_0686 aspB   FALSE 0.061 156.000 0.000 NA   NA
 5853991 5853992 HPP12_0686 HPP12_0687     TRUE 0.769 1.000 0.000 NA   NA
 5853993 5853994 HPP12_0688 HPP12_0689 ogt   TRUE 0.937 4.000 0.054 1.000   NA
 5853994 5853995 HPP12_0689 HPP12_0690   wbpB FALSE 0.320 114.000 0.047 1.000   NA
 5853995 5853996 HPP12_0690 HPP12_0691 wbpB nrdA TRUE 0.537 62.000 0.054 1.000   NA
 5853996 5853997 HPP12_0691 HPP12_0692 nrdA   FALSE 0.213 165.000 0.114 NA   NA
 5853997 5853998 HPP12_0692 HPP12_0693     TRUE 0.888 24.000 0.667 NA   NA
 5853998 5853999 HPP12_0693 HPP12_0694     FALSE 0.027 323.000 0.000 NA   NA
 5853999 5854000 HPP12_0694 HPP12_0695     FALSE 0.317 40.000 0.000 NA   NA
 5854000 5854001 HPP12_0695 HPP12_0696   glmU FALSE 0.045 203.000 0.000 NA   NA
 5854003 5854004 HPP12_0698 HPP12_0699 fecA-1 feoB FALSE 0.098 253.000 0.000 1.000 Y NA
 5854005 5854006 HPP12_0700 HPP12_0701     FALSE 0.063 282.000 0.000 1.000 N NA
 5854006 5854007 HPP12_0701 HPP12_0702   scoA TRUE 0.982 11.000 0.429 1.000 Y NA
 5854007 5854008 HPP12_0702 HPP12_0703 scoA scoB TRUE 0.993 -3.000 0.083 0.002 Y NA
 5854008 5854009 HPP12_0703 HPP12_0704 scoB atoE TRUE 0.925 20.000 0.074 1.000 Y NA
 5854009 5854010 HPP12_0704 HPP12_0705 atoE   FALSE 0.372 124.000 0.348 NA   NA
 5854010 10784754 HPP12_0705 HPP12_0706     FALSE 0.034 247.000 0.000 NA   NA
 10784754 5854011 HPP12_0706 HPP12_0707     TRUE 0.770 12.000 0.000 NA   NA
 5854011 5854012 HPP12_0707 HPP12_0708     TRUE 0.971 17.000 0.882 NA Y NA
 5854012 5854013 HPP12_0708 HPP12_0709     FALSE 0.026 335.000 0.000 NA   NA
 5854013 5854014 HPP12_0709 HPP12_0710   dgkA TRUE 0.959 -7.000 0.562 NA   NA
 5854014 5854015 HPP12_0710 HPP12_0711 dgkA gyrA TRUE 0.820 20.000 0.009 1.000 N NA
 5854015 5854016 HPP12_0711 HPP12_0712 gyrA   TRUE 0.890 0.000 0.012 NA   NA
 5854016 5854017 HPP12_0712 HPP12_0713     TRUE 0.962 -3.000 0.282 NA   NA
 5854017 5854018 HPP12_0713 HPP12_0714     TRUE 0.426 74.000 0.077 NA   NA
 5854018 5854019 HPP12_0714 HPP12_0715     TRUE 0.526 -33.000 0.000 NA   NA
 5854021 5854022 HPP12_0717 HPP12_0718 hopE   FALSE 0.084 181.000 0.008 NA   NA
 5854022 5854023 HPP12_0718 HPP12_0719     TRUE 0.786 21.000 0.031 NA   NA
 5854023 5854024 HPP12_0719 HPP12_0720     FALSE 0.083 199.000 0.010 NA   NA
 5854024 5854025 HPP12_0720 HPP12_0721   homB FALSE 0.040 225.000 0.000 NA   NA
 5854025 5854026 HPP12_0721 HPP12_0722 homB   FALSE 0.098 188.000 0.015 NA   NA
 5854027 5854028 HPP12_0723 HPP12_0724 rpoN   TRUE 0.931 3.000 0.044 1.000   NA
 5854028 5854029 HPP12_0724 HPP12_0725     TRUE 0.874 13.000 0.006 1.000   NA
 5854029 5854030 HPP12_0725 HPP12_0726   dnaX TRUE 0.969 -3.000 0.006 0.021   NA
 5854030 5854031 HPP12_0726 HPP12_0727 dnaX   FALSE 0.381 68.000 0.011 1.000   NA
 5854032 5854033 HPP12_0728 HPP12_0729     TRUE 0.760 29.000 0.154 NA   NA
 5854033 5854034 HPP12_0729 HPP12_0730   sabB FALSE 0.025 373.000 0.000 NA   NA
 5854037 5854038 HPP12_0733 HPP12_0734 sabB_2   FALSE 0.031 268.000 0.000 NA   NA
 5854038 5854039 HPP12_0734 HPP12_0735     TRUE 0.678 -30.000 0.009 NA   NA
 5854039 5854040 HPP12_0735 HPP12_0736     TRUE 0.589 92.000 0.002 0.007 N NA
 5854040 5854041 HPP12_0736 HPP12_0737     FALSE 0.346 36.000 0.000 NA   NA
 5854041 5854042 HPP12_0737 HPP12_0738     TRUE 0.498 -36.000 0.000 NA   NA
 5854042 5854043 HPP12_0738 HPP12_0739     TRUE 0.954 9.000 0.273 NA   NA
 5854043 5854044 HPP12_0739 HPP12_0740     TRUE 0.454 114.000 0.545 NA   NA
 5854044 5854045 HPP12_0740 HPP12_0741     TRUE 0.960 -3.000 0.250 NA   NA
 5854045 5854046 HPP12_0741 HPP12_0742     TRUE 0.622 18.000 0.000 NA   NA
 5854046 5854047 HPP12_0742 HPP12_0743     FALSE 0.089 220.000 0.004 1.000   NA
 5854047 5854048 HPP12_0743 HPP12_0744   gpt TRUE 0.905 2.000 0.017 1.000   NA
 5854048 5854049 HPP12_0744 HPP12_0745 gpt   TRUE 0.934 9.000 0.032 1.000   NA
 5854050 5854051 HPP12_0746 HPP12_0747 pgpA ddlA TRUE 0.426 77.000 0.018 1.000 N NA
 5854051 5854052 HPP12_0747 HPP12_0748 ddlA   TRUE 0.931 0.000 0.046 NA   NA
 5854052 5854053 HPP12_0748 HPP12_0749   murF TRUE 0.899 -13.000 0.129 NA   NA
 5854053 5854054 HPP12_0749 HPP12_0750 murF   TRUE 0.956 10.000 0.061 1.000 N NA
 5854054 5854055 HPP12_0750 HPP12_0751   prsA TRUE 0.609 65.000 0.030 1.000 Y NA
 5854056 5854057 HPP12_t13 HPP12_0752   rodA TRUE 0.492 -38.000 0.000 NA   NA
 5854057 5854058 HPP12_0752 HPP12_0753 rodA   FALSE 0.340 47.000 0.006 NA   NA
 5854058 5854059 HPP12_0753 HPP12_0754     FALSE 0.039 227.000 0.000 NA   NA
 5854060 5854061 HPP12_0755 HPP12_0756     TRUE 0.720 -49.000 0.031 NA   NA
 5854061 5854062 HPP12_0756 HPP12_0757     TRUE 0.926 11.000 0.060 NA   NA
 5854062 5854063 HPP12_0757 HPP12_0758   ftsE TRUE 0.950 -3.000 0.044 1.000   NA
 5854063 5854064 HPP12_0758 HPP12_0759 ftsE ftsX TRUE 0.957 -13.000 0.431 1.000 N NA
 5854064 5854065 HPP12_0759 HPP12_0760 ftsX   TRUE 0.955 -7.000 0.045 1.000 Y NA
 5854065 5854066 HPP12_0760 HPP12_0761   flaG-2 FALSE 0.350 93.000 0.043 NA N NA
 5854066 5854067 HPP12_0761 HPP12_0762 flaG-2 fliD TRUE 0.762 40.000 0.092 NA Y NA
 5854067 5854068 HPP12_0762 HPP12_0763 fliD fliS TRUE 0.961 42.000 0.608 0.003 Y NA
 5854068 5854069 HPP12_0763 HPP12_0764 fliS   TRUE 0.891 -13.000 0.101 NA   NA
 5854069 5854070 HPP12_0764 HPP12_0765   moeB FALSE 0.398 54.000 0.018 NA   NA
 5854070 5854071 HPP12_0765 HPP12_0766 moeB   TRUE 0.423 26.000 0.000 NA   NA
 5854071 5854072 HPP12_0766 HPP12_0767     TRUE 0.755 4.000 0.000 NA   NA
 5854072 5854073 HPP12_0767 HPP12_0768     FALSE 0.209 133.000 0.048 NA   NA
 5854073 5854074 HPP12_0768 HPP12_0769     TRUE 0.501 63.000 0.098 NA   NA
 5854075 5854076 HPP12_0770 HPP12_0771     TRUE 0.819 -100.000 0.059 1.000 N NA
 5854077 5854078 HPP12_0772 HPP12_0773   ftsY TRUE 0.858 6.000 0.011 NA   NA
 5854079 5854080 HPP12_0774 HPP12_0775     TRUE 0.420 -220.000 0.000 NA   NA
 5854080 5854081 HPP12_0775 HPP12_0776     TRUE 0.806 -3.000 0.000 NA   NA
 5854081 5854082 HPP12_0776 HPP12_0777   moaA FALSE 0.111 100.000 0.000 NA   NA
 5854083 5854084 HPP12_0778 HPP12_0779   flhB-1 TRUE 0.928 -7.000 0.026 1.000 N NA
 5854085 5854086 HPP12_0780 HPP12_0781   amiA TRUE 0.858 19.000 0.084 NA   NA
 5854086 5854087 HPP12_0781 HPP12_0782 amiA   TRUE 0.944 7.000 0.068 1.000   NA
 5854087 5854088 HPP12_0782 HPP12_0783   tyrS TRUE 0.878 17.000 0.029 1.000   NA
 5854088 5854089 HPP12_0783 HPP12_0784 tyrS spoT TRUE 0.889 24.000 0.222 1.000 N NA
 5854089 5854090 HPP12_0784 HPP12_0785 spoT   TRUE 0.933 -13.000 0.039 1.000 Y NA
 5854090 5854091 HPP12_0785 HPP12_0786   pyrH TRUE 0.672 42.000 0.033 1.000 N NA
 5854091 5854092 HPP12_0786 HPP12_0787 pyrH   FALSE 0.159 103.000 0.008 NA   NA
 5854093 5854094 HPP12_0788 HPP12_0789 acnB   FALSE 0.296 81.000 0.023 NA   NA
 5854094 5854095 HPP12_0789 HPP12_0790     FALSE 0.031 267.000 0.000 NA   NA
 5854095 5854096 HPP12_0790 HPP12_0791   hofE FALSE 0.120 94.000 0.000 NA   NA
 5854097 5854098 HPP12_0792 HPP12_0793   lolA FALSE 0.021 483.000 0.000 NA   NA
 5854099 5854100 HPP12_0794 HPP12_0795 secA lolE TRUE 0.978 -10.000 0.201 0.073 N NA
 5854100 5854101 HPP12_0795 HPP12_0796 lolE hofF FALSE 0.051 282.000 0.000 1.000   NA
 5854102 5854103 HPP12_0797 HPP12_0798 hsdS-2   TRUE 0.483 41.000 0.000 1.000 N NA
 5854103 5854104 HPP12_0798 HPP12_0799     TRUE 0.754 25.000 0.014 1.000 N NA
 5854104 5854105 HPP12_0799 HPP12_0800   def TRUE 0.948 6.000 0.054 1.000 N NA
 5854105 5854106 HPP12_0800 HPP12_0801 def clpP TRUE 0.939 5.000 0.030 1.000 N NA
 5854106 5854107 HPP12_0801 HPP12_0802 clpP tig TRUE 0.949 21.000 0.351 1.000 Y NA
 5854107 5854108 HPP12_0802 HPP12_0803 tig horG FALSE 0.147 112.000 0.008 NA   NA
 5854108 5854109 HPP12_0803 HPP12_0804 horG hpaA TRUE 0.828 29.000 0.444 NA   NA
 5854109 5854110 HPP12_0804 HPP12_0805 hpaA moaC FALSE 0.374 119.000 0.118 1.000   NA
 5854110 5854111 HPP12_0805 HPP12_0806 moaC mog TRUE 0.986 9.000 0.028 0.005 Y NA
 5854111 5854112 HPP12_0806 HPP12_0807 mog moaE TRUE 0.984 13.000 0.026 0.005 Y NA
 5854112 5854113 HPP12_0807 HPP12_0808 moaE ribA FALSE 0.086 303.000 0.000 1.000 Y NA
 5854113 5854114 HPP12_0808 HPP12_0809 ribA   FALSE 0.309 90.000 0.035 NA   NA
 5854114 5854115 HPP12_0809 HPP12_0810     FALSE 0.405 87.000 0.103 NA   NA
 5854115 5854116 HPP12_0810 HPP12_0811     TRUE 0.552 83.000 0.118 1.000 N NA
 5854118 5854119 HPP12_0813 HPP12_0814   acpS FALSE 0.120 203.000 0.005 1.000 N NA
 5854119 5854120 HPP12_0814 HPP12_0815 acpS fliL TRUE 0.947 7.000 0.047 1.000 N NA
 5854120 5854121 HPP12_0815 HPP12_0816 fliL   TRUE 0.900 9.000 0.014 NA N NA
 5854121 5854122 HPP12_0816 HPP12_0817     TRUE 0.800 -21.000 0.032 NA   NA
 5854122 5854123 HPP12_0817 HPP12_0818     FALSE 0.025 355.000 0.000 NA   NA
 5854124 5854125 HPP12_0819 HPP12_0820     TRUE 0.928 1.000 0.028 1.000   NA
 5854125 5854126 HPP12_0820 HPP12_0821   motA TRUE 0.899 16.000 0.020 1.000 N NA
 5854126 5854127 HPP12_0821 HPP12_0822 motA motB TRUE 0.968 3.000 0.119 1.000 Y NA
 5854127 5854128 HPP12_0822 HPP12_0823 motB   TRUE 0.964 -3.000 0.320 NA   NA
 5854128 5854129 HPP12_0823 HPP12_0824     TRUE 0.593 59.000 0.250 NA   NA
 5854129 5854130 HPP12_0824 HPP12_0825   proWX FALSE 0.035 242.000 0.000 NA   NA
 5854130 5854131 HPP12_0825 HPP12_0826 proWX proV TRUE 0.969 4.000 0.292 1.000 N NA
 5854131 5854132 HPP12_0826 HPP12_0827 proV   FALSE 0.200 183.000 0.123 NA   NA
 5854132 5854133 HPP12_0827 HPP12_0828   uvrC TRUE 0.853 1.000 0.009 NA   NA
 5854133 5854134 HPP12_0828 HPP12_0829 uvrC hom TRUE 0.917 11.000 0.008 1.000 N NA
 5854134 5854135 HPP12_0829 HPP12_0830 hom   TRUE 0.936 1.000 0.023 1.000 N NA
 5854135 5854136 HPP12_0830 HPP12_0831   trxA FALSE 0.369 89.000 0.027 1.000   NA
 5854136 5854137 HPP12_0831 HPP12_0832 trxA trxB-1 TRUE 0.931 5.000 0.035 1.000   NA
 5854137 5854138 HPP12_0832 HPP12_0833 trxB-1   FALSE 0.087 211.000 0.000 1.000 N NA
 5854139 5854140 HPP12_0834 HPP12_0835   atpB FALSE 0.044 323.000 0.000 1.000   NA
 5854140 5854141 HPP12_0835 HPP12_0836 atpB guaB FALSE 0.271 122.000 0.018 1.000 N NA
 5854141 5854142 HPP12_0836 HPP12_0837 guaB gatA TRUE 0.947 10.000 0.032 1.000 N NA
 5854142 5854143 HPP12_0837 HPP12_0838 gatA   TRUE 0.424 59.000 0.006 1.000 N NA
 5854143 5854144 HPP12_0838 HPP12_0839   speE TRUE 0.920 2.000 0.016 1.000 N NA
 5854144 5854145 HPP12_0839 HPP12_0840 speE   FALSE 0.350 92.000 0.068 NA   NA
 5854146 5854147 HPP12_0841 HPP12_0842     FALSE 0.159 141.000 0.008 1.000   NA
 5854147 5854148 HPP12_0842 HPP12_t14     FALSE 0.206 58.000 0.000 NA   NA
 5854148 5854149 HPP12_t14 HPP12_0843     FALSE 0.022 468.000 0.000 NA   NA
 5854149 5854150 HPP12_0843 HPP12_0844     TRUE 0.752 30.000 0.156 NA   NA
 5854150 5854151 HPP12_0844 HPP12_0845   ompP1 TRUE 0.968 -3.000 0.421 NA   NA
 5854151 5854152 HPP12_0845 HPP12_0846 ompP1   TRUE 0.917 4.000 0.061 NA   NA
 5854152 5854153 HPP12_0846 HPP12_0847   dfp TRUE 0.916 -3.000 0.009 1.000   NA
 5854153 5854154 HPP12_0847 HPP12_0848 dfp   TRUE 0.913 0.000 0.024 NA   NA
 5854155 5854156 HPP12_0849 HPP12_0850 hsdS-3 hsdM-2 TRUE 0.967 -7.000 0.039 0.058   NA
 5854158 5854159 HPP12_0852 HPP12_0853     TRUE 0.463 -63.000 0.000 NA   NA
 5854159 5854160 HPP12_0853 HPP12_0854     TRUE 0.908 -3.000 0.020 NA   NA
 5854162 5854163 HPP12_0856 HPP12_0857   gmhA TRUE 0.545 -28.000 0.000 NA   NA
 5854163 5854164 HPP12_0857 HPP12_0858 gmhA waaE TRUE 0.941 -7.000 0.050 1.000 N NA
 5854164 5854165 HPP12_0858 HPP12_0859 waaE   TRUE 0.975 -3.000 0.096 1.000 Y NA
 5854165 5854166 HPP12_0859 HPP12_0860     TRUE 0.962 10.000 0.093 1.000 N NA
 5854166 5854167 HPP12_0860 HPP12_0861     TRUE 0.875 -10.000 0.036 NA   NA
 5854167 5854168 HPP12_0861 HPP12_0862     TRUE 0.828 -9.000 0.011 NA   NA
 5854168 5854169 HPP12_0862 HPP12_0863     TRUE 0.840 5.000 0.008 NA   NA
 5854169 5854170 HPP12_0863 HPP12_0864     TRUE 0.944 5.000 0.200 NA   NA
 5854170 5854171 HPP12_0864 HPP12_0865   dut TRUE 0.901 -3.000 0.017 NA   NA
 5854171 5854172 HPP12_0865 HPP12_0866 dut greA TRUE 0.906 -10.000 0.019 1.000 N NA
 5854172 5854173 HPP12_0866 HPP12_0867 greA lpxB TRUE 0.701 41.000 0.042 1.000 N NA
 5854173 5854174 HPP12_0867 HPP12_0868 lpxB   TRUE 0.895 0.000 0.013 NA   NA
 5854174 5854175 HPP12_0868 HPP12_0869   hypA TRUE 0.920 7.000 0.062 NA   NA
 5854175 5854176 HPP12_0869 HPP12_0870 hypA flgE-1 TRUE 0.574 59.000 0.071 1.000   NA
 5854176 5854177 HPP12_0870 HPP12_0871 flgE-1 cdh FALSE 0.089 207.000 0.000 1.000 N NA
 5854179 5854180 HPP12_0873 HPP12_0874     TRUE 0.651 85.000 0.889 NA   NA
 5854180 5854181 HPP12_0874 HPP12_0875   katA FALSE 0.348 145.000 0.444 NA   NA
 5854185 5854186 HPP12_0879 HPP12_0880   ruvA FALSE 0.380 30.000 0.000 NA   NA
 5854186 5854187 HPP12_0880 HPP12_0881 ruvA   TRUE 0.541 26.000 0.008 NA   NA
 5854188 5854189 HPP12_0882 HPP12_0883 mviN cysS TRUE 0.927 1.000 0.027 1.000   NA
 5854189 5854190 HPP12_0883 HPP12_0884 cysS vacA FALSE 0.065 225.000 0.000 1.000   NA
 5854191 5854192 HPP12_0885 HPP12_0886 fecE fecD TRUE 0.991 0.000 1.000 1.000 Y NA
 5854192 5854193 HPP12_0886 HPP12_0887 fecD   TRUE 0.924 -7.000 0.035 1.000   NA
 5854195 5854196 HPP12_0889 HPP12_0890     TRUE 0.902 -67.000 0.857 NA   NA
 5854196 5854197 HPP12_0890 HPP12_0891   babA FALSE 0.025 358.000 0.000 NA   NA
 5854197 5854198 HPP12_0891 HPP12_t15 babA   FALSE 0.026 325.000 0.000 NA   NA
 5854200 5854201 HPP12_t16 HPP12_0893     FALSE 0.022 449.000 0.000 NA   NA
 5854201 5854202 HPP12_0893 HPP12_0894   hypD TRUE 0.876 -33.000 0.000 0.010   NA
 5854202 5854203 HPP12_0894 HPP12_0895 hypD hypC TRUE 0.917 18.000 0.084 NA Y NA
 5854203 5854204 HPP12_0895 HPP12_0896 hypC hypB TRUE 0.980 0.000 0.463 NA Y NA
 5854204 5854205 HPP12_0896 HPP12_0897 hypB   FALSE 0.194 115.000 0.021 NA   NA
 5854205 5854206 HPP12_0897 HPP12_0898     TRUE 0.919 11.000 0.045 NA   NA
 5854206 5854207 HPP12_0898 HPP12_0899   ackA-3 FALSE 0.295 98.000 0.045 NA   NA
 5854207 5854208 HPP12_0899 HPP12_0900 ackA-3 ackA-2 TRUE 0.978 -37.000 0.750 0.002   NA
 5854208 5854209 HPP12_0900 HPP12_0901 ackA-2 ackA-1 TRUE 0.985 -22.000 0.750 0.001   NA
 5854209 5854210 HPP12_0901 HPP12_0902 ackA-1 pta-2 TRUE 0.840 18.000 0.015 1.000   NA
 5854210 5854211 HPP12_0902 HPP12_0903 pta-2 pta-1 TRUE 0.902 35.000 0.031 0.001   NA
 5854212 5854213 HPP12_0904 HPP12_0905   flgD TRUE 0.604 51.000 0.158 NA   NA
 5854213 5854214 HPP12_0905 HPP12_0906 flgD flgE-2 TRUE 0.978 -3.000 0.368 NA Y NA
 5854214 5854215 HPP12_0906 HPP12_0907 flgE-2   TRUE 0.717 52.000 0.571 NA   NA
 5854215 5854216 HPP12_0907 HPP12_0908     TRUE 0.944 10.000 0.127 NA   NA
 5854216 5854217 HPP12_0908 HPP12_0909   rep TRUE 0.982 4.000 0.048 0.057 Y NA
 5854217 5854218 HPP12_0909 HPP12_0910 rep alpA FALSE 0.019 821.000 0.000 NA   NA
 5854218 5854219 HPP12_0910 HPP12_0911 alpA alpB TRUE 0.885 22.000 0.375 NA   NA
 5854220 5854221 HPP12_0912 HPP12_0913 hofG frpB-3 FALSE 0.056 245.000 0.000 1.000   NA
 5854221 5854222 HPP12_0913 HPP12_0914 frpB-3 frpB-2 TRUE 0.856 25.000 0.000 0.004   NA
 5854222 5854223 HPP12_0914 HPP12_0915 frpB-2   FALSE 0.076 260.000 0.022 NA   NA
 5854223 5854224 HPP12_0915 HPP12_0916   carB TRUE 0.883 5.000 0.020 NA   NA
 5854224 5854225 HPP12_0916 HPP12_0917 carB   FALSE 0.194 100.000 0.011 NA   NA
 5854226 5854227 HPP12_0918 HPP12_0919     TRUE 0.616 80.000 0.368 1.000   NA
 5854227 5854228 HPP12_0919 HPP12_0920   hopK TRUE 0.703 52.000 0.500 NA   NA
 5854230 5854231 HPP12_0922 HPP12_0923 recR truD TRUE 0.914 -3.000 0.008 1.000   NA
 5854231 5854232 HPP12_0923 HPP12_0924 truD htpX TRUE 0.890 -13.000 0.034 1.000   NA
 5854232 5854233 HPP12_0924 HPP12_0925 htpX folE TRUE 0.960 1.000 0.102 1.000 N NA
 5854233 5854234 HPP12_0925 HPP12_0926 folE ispA TRUE 0.959 16.000 0.167 1.000 Y NA
 5854234 5854235 HPP12_0926 HPP12_0927 ispA surE TRUE 0.949 -3.000 0.041 1.000   NA
 5854235 5854236 HPP12_0927 HPP12_0928 surE   TRUE 0.890 -3.000 0.012 NA   NA
 5854236 5854237 HPP12_0928 HPP12_0929     TRUE 0.884 4.000 0.023 NA   NA
 5854237 5854238 HPP12_0929 HPP12_0930     TRUE 0.959 3.000 0.139 1.000 N NA
 5854238 5854239 HPP12_0930 HPP12_0931     TRUE 0.918 11.000 0.015 1.000   NA
 5854239 5854240 HPP12_0931 HPP12_0932     FALSE 0.113 99.000 0.000 NA   NA
 5854241 5854242 HPP12_0933 HPP12_0934 proP   FALSE 0.022 472.000 0.000 NA   NA
 5854242 5854243 HPP12_0934 HPP12_0935     TRUE 0.472 -52.000 0.000 NA   NA
 5854243 5854244 HPP12_0935 HPP12_0936     FALSE 0.023 423.000 0.000 NA   NA
 5854244 5854245 HPP12_0936 HPP12_0937     TRUE 0.986 -16.000 0.594 0.024 Y NA
 5854245 5854246 HPP12_0937 HPP12_0938   alr FALSE 0.312 135.000 0.056 1.000 N NA
 5854246 5854247 HPP12_0938 HPP12_0939 alr   TRUE 0.969 7.000 0.267 1.000 N NA
 5854247 5854248 HPP12_0939 HPP12_0940   dadA TRUE 0.850 41.000 0.267 1.000 Y NA
 5854248 5854249 HPP12_0940 HPP12_0941 dadA   TRUE 0.912 23.000 0.667 NA N NA
 5854250 5854251 HPP12_t17 HPP12_t18     FALSE 0.290 42.000 0.000 NA   NA
 5854251 5854252 HPP12_t18 HPP12_t19     FALSE 0.160 74.000 0.000 NA   NA
 5854252 5854253 HPP12_t19 HPP12_t20     FALSE 0.238 50.000 0.000 NA   NA
 5854253 5854254 HPP12_t20 HPP12_0942     FALSE 0.080 126.000 0.000 NA   NA
 5854254 5854255 HPP12_0942 HPP12_0943     FALSE 0.028 316.000 0.000 NA   NA
 5854256 5854257 HPP12_0944 HPP12_0945     TRUE 0.881 10.000 0.013 NA   NA
 5854257 5854258 HPP12_0945 HPP12_0946   accD TRUE 0.885 14.000 0.035 NA   NA
 5854259 5854260 HPP12_0947 HPP12_0948     TRUE 0.921 11.000 0.047 NA   NA
 5854261 5854262 HPP12_0949 HPP12_0950     TRUE 0.738 65.000 1.000 NA   NA
 5854262 5854263 HPP12_0950 HPP12_0951   lgt TRUE 0.939 -3.000 0.013 1.000 N NA
 5854263 5854264 HPP12_0951 HPP12_0952 lgt   TRUE 0.930 10.000 0.013 1.000 N NA
 5854264 5854265 HPP12_0952 HPP12_0953     TRUE 0.921 19.000 0.133 1.000 N NA
 5854265 5854266 HPP12_0953 HPP12_0954     TRUE 0.938 1.000 0.122 NA   NA
 5854266 5854267 HPP12_0954 HPP12_0955     TRUE 0.960 10.000 0.342 NA   NA
 5854267 5854268 HPP12_0955 HPP12_0956   glyQ TRUE 0.901 2.000 0.041 NA   NA
 5854268 5854269 HPP12_0956 HPP12_0957 glyQ gpsA TRUE 0.905 14.000 0.013 1.000 N NA
 5854269 5854270 HPP12_0957 HPP12_0958 gpsA   FALSE 0.152 141.000 0.007 1.000   NA
 5854270 5854271 HPP12_0958 HPP12_0959     TRUE 0.956 0.000 0.200 NA   NA
 5854271 5854272 HPP12_0959 HPP12_0960     TRUE 0.551 -27.000 0.000 NA   NA
 5854272 5854273 HPP12_0960 HPP12_0961     TRUE 0.746 2.000 0.000 NA   NA
 5854273 5854274 HPP12_0961 HPP12_0962     TRUE 0.543 80.000 0.375 NA   NA
 5854274 5854275 HPP12_0962 HPP12_0963   vapD FALSE 0.043 211.000 0.000 NA   NA
 5854275 5854276 HPP12_0963 HPP12_0964 vapD   TRUE 0.476 70.000 0.108 NA   NA
 5854276 5854277 HPP12_0964 HPP12_0965     TRUE 0.944 16.000 0.514 NA   NA
 5854277 5854278 HPP12_0965 HPP12_0966     TRUE 0.974 0.000 0.464 NA N NA
 5854278 5854279 HPP12_0966 HPP12_0967     TRUE 0.986 -3.000 0.857 NA Y NA
 5854279 5854280 HPP12_0967 HPP12_0968   glyS TRUE 0.895 -10.000 0.013 1.000 N NA
 5854281 5854282 HPP12_0969 HPP12_0970   pgm TRUE 0.859 13.000 0.013 NA   NA
 5854282 5854283 HPP12_0970 HPP12_0971 pgm gatC TRUE 0.889 15.000 0.009 1.000 N NA
 5854285 5854286 HPP12_0973 HPP12_0974   ftsA TRUE 0.938 16.000 0.184 1.000   NA
 5854286 5854287 HPP12_0974 HPP12_0975 ftsA ftsZ TRUE 0.448 131.000 0.114 1.000 Y NA
 5854288 5854289 HPP12_0976 HPP12_0977     FALSE 0.075 131.000 0.000 NA   NA
 5854289 5854290 HPP12_0977 HPP12_0978     TRUE 0.413 172.000 1.000 NA   NA
 5854290 5854291 HPP12_0978 HPP12_0979     FALSE 0.058 163.000 0.000 NA   NA
 5854291 5854292 HPP12_0979 HPP12_0980     FALSE 0.034 524.000 0.000 1.000   NA
 5854292 5854293 HPP12_0980 HPP12_0981     TRUE 0.755 4.000 0.000 NA   NA
 5854293 5854294 HPP12_0981 HPP12_0982     FALSE 0.030 296.000 0.000 NA   NA
 5854294 5854295 HPP12_0982 HPP12_0983     FALSE 0.280 43.000 0.000 NA   NA
 5854295 5854296 HPP12_0983 HPP12_0984     TRUE 0.420 134.000 0.684 NA   NA
 5854296 5854297 HPP12_0984 HPP12_0985     FALSE 0.185 66.000 0.000 NA   NA
 5854297 5854298 HPP12_0985 HPP12_0986     FALSE 0.248 48.000 0.000 NA   NA
 5854298 5854299 HPP12_0986 HPP12_0987     FALSE 0.328 39.000 0.000 NA   NA
 5854299 5854300 HPP12_0987 HPP12_0988     TRUE 0.783 10.000 0.000 NA   NA
 5854300 5854301 HPP12_0988 HPP12_0989     FALSE 0.118 96.000 0.000 NA   NA
 5854301 5854302 HPP12_0989 HPP12_0990     TRUE 0.801 40.000 0.000 0.001   NA
 5854302 5854303 HPP12_0990 HPP12_0991     FALSE 0.097 160.000 0.000 1.000   NA
 5854303 5854304 HPP12_0991 HPP12_0992     TRUE 0.964 -3.000 0.300 NA   NA
 5854304 5854305 HPP12_0992 HPP12_0993   terY FALSE 0.220 167.000 0.136 NA   NA
 5854305 5854306 HPP12_0993 HPP12_0994 terY   TRUE 0.783 10.000 0.000 NA   NA
 5854306 5854307 HPP12_0994 HPP12_r1     FALSE 0.027 323.000 0.000 NA   NA
 5854307 5854308 HPP12_r1 HPP12_r2     FALSE 0.036 240.000 0.000 NA   NA
 5854309 5854310 HPP12_0995 HPP12_0996     TRUE 0.649 53.000 0.286 NA   NA
 5854310 5854311 HPP12_0996 HPP12_0997     TRUE 0.794 42.000 0.714 NA   NA
 5854311 5854312 HPP12_0997 HPP12_0998     FALSE 0.273 44.000 0.000 NA   NA
 5854312 5854313 HPP12_0998 HPP12_0999     FALSE 0.082 124.000 0.000 NA   NA
 5854313 5854314 HPP12_0999 HPP12_1000     FALSE 0.102 105.000 0.000 NA   NA
 5854314 5854315 HPP12_1000 HPP12_1001     TRUE 0.629 -15.000 0.000 NA   NA
 5854316 5854317 HPP12_1002 HPP12_1003 speA capJ TRUE 0.921 14.000 0.024 1.000 N NA
 5854317 5854318 HPP12_1003 HPP12_1004 capJ   TRUE 0.941 5.000 0.093 NA N NA
 5854318 5854319 HPP12_1004 HPP12_1005     TRUE 0.815 21.000 0.053 NA   NA
 5854319 5854320 HPP12_1005 HPP12_1006     TRUE 0.899 4.000 0.033 NA   NA
 5854320 5854321 HPP12_1006 HPP12_1007   metG TRUE 0.939 1.000 0.046 1.000   NA
 5854323 5854324 HPP12_1009 HPP12_t21     FALSE 0.020 597.000 0.000 NA   NA
 5854324 5854325 HPP12_t21 HPP12_t22     TRUE 0.622 18.000 0.000 NA   NA
 5854325 5854326 HPP12_t22 HPP12_t23     FALSE 0.197 61.000 0.000 NA   NA
 5854326 5854327 HPP12_t23 HPP12_t24     FALSE 0.178 68.000 0.000 NA   NA
 5854327 5854328 HPP12_t24 HPP12_1010     FALSE 0.050 186.000 0.000 NA   NA
 5854328 5854329 HPP12_1010 HPP12_1011   guaA FALSE 0.282 85.000 0.007 1.000   NA
 5854329 5854330 HPP12_1011 HPP12_1012 guaA   TRUE 0.848 11.000 0.007 NA   NA
 5854330 5854331 HPP12_1012 HPP12_1013     FALSE 0.404 167.000 0.875 NA   NA
 5854331 5854332 HPP12_1013 HPP12_1014     FALSE 0.396 104.000 0.241 NA   NA
 5854332 5854333 HPP12_1014 HPP12_1015     TRUE 0.761 26.000 0.105 NA   NA
 5854333 5854334 HPP12_1015 HPP12_1016     TRUE 0.852 19.000 0.014 1.000 N NA
 5854335 5854336 HPP12_1017 HPP12_1018 pheS pheT TRUE 0.996 0.000 0.574 0.001 Y NA
 5854336 5854337 HPP12_1018 HPP12_1019 pheT aroA TRUE 0.909 16.000 0.028 1.000 N NA
 5854337 5854338 HPP12_1019 HPP12_1020 aroA lytB TRUE 0.920 -10.000 0.032 1.000 N NA
 5854338 5854339 HPP12_1020 HPP12_1021 lytB rpsA FALSE 0.356 121.000 0.058 1.000 N NA
 5854339 5854340 HPP12_1021 HPP12_1022 rpsA   TRUE 0.490 29.000 0.005 NA   NA
 5854340 5854341 HPP12_1022 HPP12_1023   serA TRUE 0.762 16.000 0.006 NA   NA
 5854341 5854342 HPP12_1023 HPP12_1024 serA   TRUE 0.935 10.000 0.016 NA Y NA
 5854342 5854343 HPP12_1024 HPP12_1025     TRUE 0.684 23.000 0.017 NA   NA
 5854343 5854344 HPP12_1025 HPP12_1026     TRUE 0.863 2.000 0.015 NA   NA
 5854344 5854345 HPP12_1026 HPP12_1027   cheV-3 TRUE 0.941 4.000 0.065 1.000   NA
 5854345 5854346 HPP12_1027 HPP12_1028 cheV-3 cheA TRUE 0.895 57.000 0.147 0.007 Y NA
 5854346 5854347 HPP12_1028 HPP12_1029 cheA cheW TRUE 0.992 -3.000 0.137 0.011 Y NA
 5854349 5854350 HPP12_1031 HPP12_1032     TRUE 0.529 55.000 0.018 1.000 N NA
 5854351 5854352 HPP12_1033 HPP12_1034 priA   TRUE 0.712 -15.000 0.003 NA   NA
 5854352 5854353 HPP12_1034 HPP12_1035     TRUE 0.949 13.000 0.300 NA   NA
 5854356 5854357 HPP12_1038 HPP12_1039     FALSE 0.151 79.000 0.000 NA   NA
 5854357 5854358 HPP12_1039 HPP12_1040   hemK TRUE 0.963 -3.000 0.068 1.000 N NA
 5854358 5854359 HPP12_1040 HPP12_1041 hemK gdhA TRUE 0.484 67.000 0.020 1.000 N NA
 5854360 5854361 HPP12_1042 HPP12_1043     TRUE 0.983 10.000 0.176 0.068   NA
 5854361 5854362 HPP12_1043 HPP12_1044     TRUE 0.986 9.000 0.750 1.000 Y NA
 5854362 5854363 HPP12_1044 HPP12_1045   hemH TRUE 0.446 77.000 0.024 1.000 N NA
 5854364 5854365 HPP12_1046 HPP12_1047     TRUE 0.934 1.000 0.098 NA   NA
 5854366 5854367 HPP12_1048 HPP12_1049 homC dcd FALSE 0.124 161.000 0.017 NA   NA
 5854368 5854369 HPP12_1050 HPP12_1051     TRUE 0.965 6.000 0.071 1.000 Y NA
 5854369 5854370 HPP12_1051 HPP12_1052     FALSE 0.336 93.000 0.023 1.000   NA
 5854370 5854371 HPP12_1052 HPP12_1053     TRUE 0.958 0.000 0.222 NA   NA
 5854371 5854372 HPP12_1053 HPP12_1054     TRUE 0.588 93.000 0.778 NA   NA
 5854372 5854373 HPP12_1054 HPP12_1055     TRUE 0.933 -3.000 0.053 NA   NA
 5854375 5854376 HPP12_1056 HPP12_1057 nrdB pcm TRUE 0.970 10.000 0.227 1.000 N NA
 5854376 5854377 HPP12_1057 HPP12_1058 pcm   TRUE 0.914 11.000 0.012 1.000   NA
 5854377 5854378 HPP12_1058 HPP12_1059   truA TRUE 0.936 2.000 0.059 1.000   NA
 5854380 5854381 HPP12_t26 HPP12_t27     TRUE 0.622 18.000 0.000 NA   NA
 5854381 5854382 HPP12_t27 HPP12_1061     FALSE 0.023 415.000 0.000 NA   NA
 5854382 5854383 HPP12_1061 HPP12_1062     TRUE 0.831 18.000 0.035 NA   NA
 5854384 5854385 HPP12_1063 HPP12_1064 hcpC eda TRUE 0.443 75.000 0.034 1.000   NA
 5854385 5854386 HPP12_1064 HPP12_1065 eda edd TRUE 0.963 19.000 0.523 1.000 Y NA
 5854387 5854388 HPP12_1066 HPP12_1067     TRUE 0.959 11.000 0.028 1.000 Y NA
 5854388 5854389 HPP12_1067 HPP12_1068   glk TRUE 0.951 -13.000 0.117 1.000 Y NA
 5854389 5854390 HPP12_1068 HPP12_1069 glk   FALSE 0.227 170.000 0.061 1.000   NA
 5854394 5854395 HPP12_1073 HPP12_1074 porG porD TRUE 0.988 16.000 0.205 0.003 Y NA
 5854395 5854396 HPP12_1074 HPP12_1075 porD porA TRUE 0.995 10.000 0.625 0.003 Y NA
 5854396 5854397 HPP12_1075 HPP12_1076 porA porB TRUE 0.992 13.000 0.268 0.003 Y NA
 5854397 5854398 HPP12_1076 HPP12_1077 porB purB FALSE 0.249 108.000 0.007 1.000 N NA
 5854398 5854399 HPP12_1077 HPP12_1078 purB horI FALSE 0.242 71.000 0.007 NA   NA
 5854400 5854401 HPP12_1079 HPP12_1080 uvrB   FALSE 0.304 41.000 0.000 NA   NA
 5854401 5854402 HPP12_1080 HPP12_1081     TRUE 0.747 13.000 0.000 NA   NA
 5854402 5854403 HPP12_1081 HPP12_1082   hcpX FALSE 0.023 407.000 0.000 NA   NA
 5854403 5854404 HPP12_1082 HPP12_1083 hcpX ggt FALSE 0.059 238.000 0.000 1.000   NA
 5854404 5854405 HPP12_1083 HPP12_1084 ggt flgK FALSE 0.231 177.000 0.041 1.000 N NA
 5854405 5854406 HPP12_1084 HPP12_1085 flgK   TRUE 0.960 2.000 0.558 NA   NA
 5854406 5854407 HPP12_1085 HPP12_1086     FALSE 0.401 79.000 0.069 NA   NA
 5854407 5854408 HPP12_1086 HPP12_1087     TRUE 0.952 -7.000 0.389 NA   NA
 5854408 5854409 HPP12_1087 HPP12_1088   flgM FALSE 0.334 163.000 0.258 1.000   NA
 5854409 5854410 HPP12_1088 HPP12_1089 flgM   TRUE 0.596 64.000 0.290 NA   NA
 5854410 5854411 HPP12_1089 HPP12_1090   slyD TRUE 0.753 32.000 0.200 NA   NA
 5854411 5854412 HPP12_1090 HPP12_1091 slyD   TRUE 0.955 -13.000 0.543 1.000   NA
 5854412 5854413 HPP12_1091 HPP12_1092     TRUE 0.979 8.000 0.794 1.000   NA
 5854413 5854414 HPP12_1092 HPP12_1093   tolB TRUE 0.766 67.000 0.702 1.000 N NA
 5854414 5854415 HPP12_1093 HPP12_1094 tolB   TRUE 0.806 -3.000 0.000 NA   NA
 5854415 5854416 HPP12_1094 HPP12_1095   exbD-1 TRUE 0.601 19.000 0.000 NA   NA
 5854416 5854417 HPP12_1095 HPP12_1096 exbD-1 exbB-1 TRUE 0.944 53.000 0.944 0.032 Y NA
 5854417 5854418 HPP12_1096 HPP12_1097 exbB-1   TRUE 0.949 11.000 0.036 1.000 N NA
 5854418 5854419 HPP12_1097 HPP12_1098     TRUE 0.996 11.000 0.837 0.007 Y NA
 5854419 5854420 HPP12_1098 HPP12_1099     TRUE 0.981 24.000 0.724 0.007 Y NA
 5854420 5854421 HPP12_1099 HPP12_1100     TRUE 0.994 15.000 0.846 0.007 Y NA
 5854421 5854422 HPP12_1100 HPP12_1101     TRUE 0.985 23.000 0.864 0.007 Y NA
 5854422 5854423 HPP12_1101 HPP12_1102     TRUE 0.990 1.000 0.132 0.007 Y NA
 5854423 5854424 HPP12_1102 HPP12_1103     TRUE 0.989 4.000 0.110 0.007 Y NA
 5854424 5854425 HPP12_1103 HPP12_1104   spo0J FALSE 0.357 110.000 0.037 1.000 N NA
 5854425 5854426 HPP12_1104 HPP12_1105 spo0J soj TRUE 0.981 4.000 0.827 1.000 N NA
 5854426 5854427 HPP12_1105 HPP12_1106 soj   TRUE 0.940 3.000 0.040 1.000 N NA
 5854427 5854428 HPP12_1106 HPP12_1107   fmt TRUE 0.952 -3.000 0.029 1.000 N NA
 5854428 5854429 HPP12_1107 HPP12_1108 fmt   TRUE 0.831 2.000 0.000 1.000   NA
 5854429 5854430 HPP12_1108 HPP12_1109     FALSE 0.265 45.000 0.000 NA   NA
 5854432 5854433 HPP12_r3 HPP12_1111     FALSE 0.019 745.000 0.000 NA   NA
 5854435 5854436 HPP12_1113 HPP12_1114 rplS trmD TRUE 0.952 22.000 0.567 1.000 Y NA
 5854436 5854437 HPP12_1114 HPP12_1115 trmD rimM TRUE 0.985 1.000 0.672 1.000 Y NA
 5854437 5854438 HPP12_1115 HPP12_1116 rimM   TRUE 0.967 1.000 0.324 1.000   NA
 5854438 5854439 HPP12_1116 HPP12_1117   rpsP TRUE 0.945 17.000 0.385 1.000   NA
 5854439 5854440 HPP12_1117 HPP12_1118 rpsP ffh TRUE 0.674 74.000 0.361 1.000 N NA
 5854440 5854441 HPP12_1118 HPP12_1119 ffh valS TRUE 0.944 15.000 0.006 0.096 N NA
 5854442 5854443 HPP12_1120 HPP12_1121 fliW-1 murG TRUE 0.892 12.000 0.022 NA   NA
 5854443 5854444 HPP12_1121 HPP12_1122 murG hopI FALSE 0.205 108.000 0.020 NA   NA
 5854444 5854445 HPP12_1122 HPP12_1123 hopI hopL TRUE 0.870 23.000 0.375 NA   NA
 5854445 5854446 HPP12_1123 HPP12_1124 hopL proC TRUE 0.900 14.000 0.057 NA   NA
 5854446 5854447 HPP12_1124 HPP12_1125 proC fic TRUE 0.843 28.000 0.151 1.000 N NA
 5854448 5854449 HPP12_1126 HPP12_1127   fldA FALSE 0.308 54.000 0.007 NA   NA
 5854449 5854450 HPP12_1127 HPP12_1128 fldA   TRUE 0.470 92.000 0.281 NA   NA
 5854451 5854452 HPP12_1129 HPP12_1130   trxB-2 TRUE 0.740 26.000 0.043 NA N NA
 5854454 5854455 HPP12_1132 HPP12_1133 pgi hofH FALSE 0.047 308.000 0.000 1.000   NA
 5854457 5854458 HPP12_1135 HPP12_1136   glnP TRUE 0.995 3.000 0.841 0.010 Y NA
 5854458 5854459 HPP12_1136 HPP12_1137 glnP glnQ TRUE 0.984 2.000 0.773 1.000 Y NA
 5854459 5854460 HPP12_1137 HPP12_1138 glnQ   TRUE 0.861 49.000 0.671 1.000 Y NA
 5854460 5854461 HPP12_1138 HPP12_1139     FALSE 0.279 122.000 0.098 NA   NA
 5854462 5854463 HPP12_1140 HPP12_1141     FALSE 0.281 129.000 0.048 1.000   NA
 5854463 5854464 HPP12_1141 HPP12_1142   hopQ FALSE 0.021 480.000 0.000 NA   NA
 5854464 5854465 HPP12_1142 HPP12_1143 hopQ deoD FALSE 0.022 462.000 0.000 NA   NA
 5854465 5854466 HPP12_1143 HPP12_1144 deoD deoB TRUE 0.953 -3.000 0.031 1.000 N NA
 5854466 5854467 HPP12_1144 HPP12_1145 deoB nupC TRUE 0.954 12.000 0.062 1.000 N NA
 5854467 5854468 HPP12_1145 HPP12_t28 nupC   FALSE 0.108 101.000 0.000 NA   NA
 5854469 5854470 HPP12_1146 HPP12_1147     TRUE 0.836 19.000 0.029 NA N NA
 5854471 5854472 HPP12_1148 HPP12_1149     TRUE 0.795 26.000 0.039 1.000 N NA
 5854476 5854477 HPP12_1153 HPP12_1154     FALSE 0.031 280.000 0.000 NA   NA
 5854477 5854478 HPP12_1154 HPP12_1155   asd FALSE 0.023 413.000 0.000 NA   NA
 5854478 5854479 HPP12_1155 HPP12_1156 asd hisS TRUE 0.945 -13.000 0.011 0.040 N NA
 5854483 5854484 HPP12_1160 HPP12_1161 fusA rpsG TRUE 0.984 12.000 0.579 1.000 Y NA
 5854484 5854485 HPP12_1161 HPP12_1162 rpsG rpsL TRUE 0.992 16.000 0.620 0.005 Y NA
 5854485 5854486 HPP12_1162 HPP12_1163 rpsL rpoB FALSE 0.366 138.000 0.122 1.000 N NA
 5854486 5854487 HPP12_1163 HPP12_1164 rpoB rplL FALSE 0.119 222.000 0.008 1.000 N NA
 5854487 5854488 HPP12_1164 HPP12_1165 rplL rplJ TRUE 0.955 45.000 0.884 0.024 Y NA
 5854488 5854489 HPP12_1165 HPP12_1166 rplJ rplA TRUE 0.776 109.000 0.302 0.033 Y NA
 5854489 5854490 HPP12_1166 HPP12_1167 rplA rplK TRUE 0.950 45.000 0.838 0.033 Y NA
 5854490 5854491 HPP12_1167 HPP12_1168 rplK nusG TRUE 0.960 18.000 0.681 1.000 N NA
 5854491 5854492 HPP12_1168 HPP12_1169 nusG secE TRUE 0.911 27.000 0.843 1.000   NA
 5854492 5854493 HPP12_1169 HPP12_t29 secE   FALSE 0.068 142.000 0.000 NA   NA
 5854493 5854494 HPP12_t29 HPP12_1170     FALSE 0.038 231.000 0.000 NA   NA
 5854494 5854495 HPP12_1170 HPP12_t30     FALSE 0.079 128.000 0.000 NA   NA
 5854495 5854496 HPP12_t30 HPP12_t31     FALSE 0.372 31.000 0.000 NA   NA
 5854496 5854497 HPP12_t31 HPP12_t32     TRUE 0.679 16.000 0.000 NA   NA
 5854497 5854498 HPP12_t32 HPP12_t33     FALSE 0.401 28.000 0.000 NA   NA
 5854500 5854501 HPP12_1172 HPP12_1173     FALSE 0.163 201.000 0.030 1.000   NA
 5854501 5854502 HPP12_1173 HPP12_1174     TRUE 0.966 9.000 0.571 NA   NA
 5854502 5854503 HPP12_1174 HPP12_1175     TRUE 0.889 -42.000 0.600 NA   NA
 5854503 5854504 HPP12_1175 HPP12_1176   cysE FALSE 0.329 88.000 0.043 NA   NA
 5854504 5854505 HPP12_1176 HPP12_t34 cysE   FALSE 0.029 300.000 0.000 NA   NA
 5854505 5854506 HPP12_t34 HPP12_t35     FALSE 0.222 54.000 0.000 NA   NA
 5854506 5854507 HPP12_t35 HPP12_1177     FALSE 0.163 73.000 0.000 NA   NA
 5854509 5854510 HPP12_1179 HPP12_1180 pnp   TRUE 0.889 3.000 0.028 NA   NA
 5854510 5854511 HPP12_1180 HPP12_1181     TRUE 0.923 15.000 0.165 NA   NA
 5854511 5854512 HPP12_1181 HPP12_1182     TRUE 0.929 3.000 0.116 NA   NA
 5854512 5854513 HPP12_1182 HPP12_1183   purD FALSE 0.395 49.000 0.013 NA   NA
 5854513 5854514 HPP12_1183 HPP12_1184 purD   FALSE 0.024 384.000 0.000 NA   NA
 5854514 5854515 HPP12_1184 HPP12_1185     TRUE 0.911 -34.000 0.750 NA   NA
 5854515 5854516 HPP12_1185 HPP12_1186     FALSE 0.022 443.000 0.000 NA   NA
 5854516 5854517 HPP12_1186 HPP12_1187     TRUE 0.910 -6.000 0.008 1.000 N NA
 5854517 5854518 HPP12_1187 HPP12_1188   dld TRUE 0.581 41.000 0.008 1.000 N NA
 5854519 5854520 HPP12_1189 HPP12_1190   hemD TRUE 0.931 3.000 0.026 1.000 N NA
 5854520 5854521 HPP12_1190 HPP12_1191 hemD crcB TRUE 0.660 47.000 0.051 1.000 N NA
 5854523 5854524 HPP12_1193 HPP12_1194   mutT FALSE 0.208 161.000 0.019 1.000 N NA
 5854524 5854525 HPP12_1194 HPP12_1195 mutT lysC TRUE 0.944 2.000 0.051 1.000 N NA
 5854525 5854526 HPP12_1195 HPP12_1196 lysC   TRUE 0.932 -3.000 0.050 NA   NA
 5854526 5854527 HPP12_1196 HPP12_1197   holB TRUE 0.934 -3.000 0.053 NA   NA
 5854527 5854528 HPP12_1197 HPP12_1198 holB folP TRUE 0.952 -3.000 0.054 1.000   NA
 5854530 5854531 HPP12_1200 HPP12_1201     TRUE 0.943 4.000 0.211 NA   NA
 5854531 5854532 HPP12_1201 HPP12_1202     TRUE 0.476 79.000 0.174 NA   NA
 5854532 5854533 HPP12_1202 HPP12_1203   carA TRUE 0.928 0.000 0.041 NA   NA
 5854533 5854534 HPP12_1203 HPP12_1204 carA   FALSE 0.132 167.000 0.008 1.000   NA
 5854535 5854536 HPP12_1205 HPP12_1206     FALSE 0.305 53.000 0.005 NA   NA
 5854536 5854537 HPP12_1206 HPP12_1207   alaS TRUE 0.887 2.000 0.015 NA N NA
 5854539 5854540 HPP12_1209 HPP12_1210 babB rpsR FALSE 0.020 584.000 0.000 NA   NA
 5854540 5854541 HPP12_1210 HPP12_1211 rpsR ssb TRUE 0.833 23.000 0.034 1.000 N NA
 5854541 5854542 HPP12_1211 HPP12_1212 ssb rpsF TRUE 0.948 10.000 0.033 1.000 N NA
 5854542 5854543 HPP12_1212 HPP12_1213 rpsF   FALSE 0.223 153.000 0.020 1.000 N NA
 5854543 5854544 HPP12_1213 HPP12_1214   vacB TRUE 0.912 -10.000 0.024 1.000 N NA
 5854544 5854545 HPP12_1214 HPP12_1215 vacB aroE TRUE 0.946 0.000 0.020 1.000 N NA
 5854545 5854546 HPP12_1215 HPP12_1216 aroE   TRUE 0.883 8.000 0.018 NA   NA
 5854546 5854547 HPP12_1216 HPP12_1217     TRUE 0.969 9.000 0.667 NA   NA
 5854547 5854548 HPP12_1217 HPP12_1218     TRUE 0.991 -3.000 0.500 0.022   NA
 5854548 5854549 HPP12_1218 HPP12_1219   trpS TRUE 0.909 1.000 0.007 1.000 N NA
 5854549 5854550 HPP12_1219 HPP12_1220 trpS bioC FALSE 0.395 71.000 0.016 1.000   NA
 5854551 5854552 HPP12_1221 HPP12_1222 secG frr TRUE 0.927 0.000 0.008 1.000 N NA
 5854552 5854553 HPP12_1222 HPP12_1223 frr pyrE TRUE 0.934 4.000 0.026 1.000 N NA
 5854553 5854554 HPP12_1223 HPP12_1224 pyrE   TRUE 0.899 -10.000 0.071 NA   NA
 5854554 5854555 HPP12_1224 HPP12_1225     TRUE 0.940 -3.000 0.070 NA   NA
 5854555 5854556 HPP12_1225 HPP12_1226   nuoA FALSE 0.399 108.000 0.061 1.000 N NA
 5854556 5854557 HPP12_1226 HPP12_1227 nuoA nuoB TRUE 0.996 0.000 0.571 0.004 Y NA
 5854557 5854558 HPP12_1227 HPP12_1228 nuoB nuoC TRUE 0.996 0.000 0.703 0.004 Y NA
 5854558 5854559 HPP12_1228 HPP12_1229 nuoC nuoD TRUE 0.993 2.000 0.650 0.010 Y NA
 5854559 5854560 HPP12_1229 HPP12_1230 nuoD nuoE TRUE 0.993 -3.000 0.650 0.010   NA
 5854560 5854561 HPP12_1230 HPP12_1231 nuoE nuoF TRUE 0.949 3.000 0.000 0.010   NA
 5854561 5854562 HPP12_1231 HPP12_1232 nuoF nuoG TRUE 0.963 -3.000 0.000 0.010   NA
 5854562 5854563 HPP12_1232 HPP12_1233 nuoG nuoH TRUE 0.990 -3.000 0.065 0.010 Y NA
 5854563 5854564 HPP12_1233 HPP12_1234 nuoH nuoI TRUE 0.994 11.000 0.500 0.010 Y NA
 5854564 5854565 HPP12_1234 HPP12_1235 nuoI nuoJ TRUE 0.992 -7.000 0.442 0.010 Y NA
 5854565 5854566 HPP12_1235 HPP12_1236 nuoJ nuoK TRUE 0.991 -3.000 0.064 0.004 Y NA
 5854566 5854567 HPP12_1236 HPP12_1237 nuoK nuoL TRUE 0.986 3.000 0.056 0.010 Y NA
 5854567 5854568 HPP12_1237 HPP12_1238 nuoL nuoM TRUE 0.989 4.000 0.056 0.002 Y NA
 5854568 5854569 HPP12_1238 HPP12_1239 nuoM nuoN TRUE 0.990 -13.000 0.389 0.002 Y NA
 5854569 5854570 HPP12_1239 HPP12_1240 nuoN pflA TRUE 0.964 -10.000 0.586 1.000   NA
 5854570 5854571 HPP12_1240 HPP12_1241 pflA   TRUE 0.922 3.000 0.030 1.000   NA
 5854571 5854572 HPP12_1241 HPP12_1242     FALSE 0.044 298.000 0.007 NA   NA
 5854573 5854574 HPP12_1243 HPP12_1244 trpA trpB TRUE 0.997 -3.000 0.947 0.001 Y NA
 5854574 5854575 HPP12_1244 HPP12_1245 trpB trpC TRUE 0.993 1.000 0.221 0.002 Y NA
 5854575 5854576 HPP12_1245 HPP12_1246 trpC trpD TRUE 0.975 -7.000 0.293 1.000 Y NA
 5854576 5854577 HPP12_1246 HPP12_1247 trpD trpG TRUE 0.974 -3.000 0.083 1.000 Y NA
 5854577 5854578 HPP12_1247 HPP12_1248 trpG trpE TRUE 0.997 -3.000 0.703 0.001 Y NA
 5854578 5854579 HPP12_1248 HPP12_1249 trpE   FALSE 0.082 223.000 0.000 1.000 N NA
 5854579 5854580 HPP12_1249 HPP12_1250     TRUE 0.803 96.000 0.078 0.003 Y NA
 5854580 5854581 HPP12_1250 HPP12_1251     TRUE 0.523 70.000 0.068 1.000   NA
 5854584 5854585 HPP12_1254 HPP12_1255     TRUE 0.902 24.000 0.800 NA   NA
 5854585 5854586 HPP12_1255 HPP12_1256   pnuC FALSE 0.216 185.000 0.182 NA   NA
 5854586 5854587 HPP12_1256 HPP12_1257 pnuC   TRUE 0.927 -12.000 0.021 1.000 Y NA
 5854588 5854589 HPP12_1258 HPP12_1259 rplQ rpoA TRUE 0.987 0.000 0.873 1.000 N NA
 5854589 5854590 HPP12_1259 HPP12_1260 rpoA rpsD TRUE 0.978 12.000 0.549 1.000 N NA
 5854590 5854591 HPP12_1260 HPP12_1261 rpsD rpsK TRUE 0.993 10.000 0.509 0.032 Y NA
 5854591 5854592 HPP12_1261 HPP12_1262 rpsK rpsM TRUE 0.982 23.000 0.810 0.023 Y NA
 5854592 5854593 HPP12_1262 HPP12_1263 rpsM infA TRUE 0.539 196.000 0.075 0.022 Y NA
 5854593 5854594 HPP12_1263 HPP12_1264 infA map TRUE 0.970 0.000 0.051 1.000 Y NA
 5854594 5854595 HPP12_1264 HPP12_1265 map secY TRUE 0.950 0.000 0.026 1.000 N NA
 5854595 5854596 HPP12_1265 HPP12_1266 secY rplO TRUE 0.855 43.000 0.730 1.000 N NA
 5854596 5854597 HPP12_1266 HPP12_1267 rplO rpsE TRUE 0.977 18.000 0.148 0.032 Y NA
 5854597 5854598 HPP12_1267 HPP12_1268 rpsE rplR TRUE 0.995 -3.000 0.814 0.032 Y NA
 5854598 5854599 HPP12_1268 HPP12_1269 rplR rplF TRUE 0.993 14.000 0.815 0.023 Y NA
 5854599 5854600 HPP12_1269 HPP12_1270 rplF rpsH TRUE 0.995 11.000 0.808 0.023 Y NA
 5854600 5854601 HPP12_1270 HPP12_1271 rpsH rplE TRUE 0.496 207.000 0.059 0.023 Y NA
 5854601 5854602 HPP12_1271 HPP12_1272 rplE rplX TRUE 0.994 13.000 0.758 0.023 Y NA
 5854602 5854603 HPP12_1272 HPP12_1273 rplX rplN TRUE 0.985 -25.000 0.810 0.032 Y NA
 5854603 5854604 HPP12_1273 HPP12_1274 rplN rpsQ TRUE 0.993 3.000 0.791 0.032 Y NA
 5854604 5854605 HPP12_1274 HPP12_1275 rpsQ rpmC TRUE 0.993 14.000 0.828 0.023 Y NA
 5854605 5854606 HPP12_1275 HPP12_1276 rpmC rplP TRUE 0.991 -13.000 0.802 0.023 Y NA
 5854606 5854607 HPP12_1276 HPP12_1277 rplP rpsC TRUE 0.994 3.000 0.828 0.032 Y NA
 5854607 5854608 HPP12_1277 HPP12_1278 rpsC rplV TRUE 0.993 4.000 0.719 0.032 Y NA
 5854608 5854609 HPP12_1278 HPP12_1279 rplV rpsS TRUE 0.994 10.000 0.769 0.032 Y NA
 5854609 5854610 HPP12_1279 HPP12_1280 rpsS rplB TRUE 0.995 11.000 0.820 0.032 Y NA
 5854610 5854611 HPP12_1280 HPP12_1281 rplB rplW TRUE 0.977 17.000 0.849 1.000 Y NA
 5854611 5854612 HPP12_1281 HPP12_1282 rplW rplD TRUE 0.981 4.000 0.513 1.000 Y NA
 5854612 5854613 HPP12_1282 HPP12_1283 rplD rplC TRUE 0.953 35.000 0.361 0.023 Y NA
 5854613 5854614 HPP12_1283 HPP12_1284 rplC rpsJ TRUE 0.953 37.000 0.467 0.032 Y NA
 5854615 5854616 HPP12_1285 HPP12_1286     FALSE 0.048 189.000 0.000 NA   NA
 5854617 5854618 HPP12_1287 HPP12_1288 rnhB   FALSE 0.143 108.000 0.007 NA   NA
 5854618 5854619 HPP12_1288 HPP12_1289   fumC TRUE 0.677 22.000 0.010 NA   NA
 5854620 5854621 HPP12_1290 HPP12_1291     TRUE 0.965 5.000 0.625 NA   NA
 5854621 5854622 HPP12_1291 HPP12_1292   czcB TRUE 0.982 -3.000 0.562 NA Y NA
 5854622 5854623 HPP12_1292 HPP12_1293 czcB czcA TRUE 0.969 1.000 0.526 NA N NA
 5854624 5854625 HPP12_1294 HPP12_1295     TRUE 0.983 -6.000 0.915 NA Y NA
 5854625 5854626 HPP12_1295 HPP12_1296   dnaJ TRUE 0.931 11.000 0.014 1.000 N NA
 5854630 5854631 HPP12_1300 HPP12_1301     TRUE 0.856 -16.000 0.014 1.000 N NA
 5854632 5854633 HPP12_1302 HPP12_1303 exbB-2 exbD-2 TRUE 0.996 -3.000 0.815 0.031 Y NA
 5854633 5854634 HPP12_1303 HPP12_1304 exbD-2 tonB TRUE 0.963 -34.000 0.407 0.064 N NA
 5854634 5854635 HPP12_1304 HPP12_1305 tonB hopN FALSE 0.246 183.000 0.273 NA   NA
 5854636 5854637 HPP12_1306 HPP12_1307   corA TRUE 0.971 7.000 0.134 1.000 Y NA
 5854637 5854638 HPP12_1307 HPP12_1308 corA pgk TRUE 0.880 16.000 0.011 1.000 N NA
 5854638 5854639 HPP12_1308 HPP12_1309 pgk gap TRUE 0.976 16.000 0.020 0.005 Y NA
 5854639 5854640 HPP12_1309 HPP12_1310 gap ung TRUE 0.509 89.000 0.088 1.000 N NA
 5854640 5854641 HPP12_1310 HPP12_1311 ung plsC TRUE 0.966 -3.000 0.088 1.000 N NA
 5854641 5854642 HPP12_1311 HPP12_1312 plsC   TRUE 0.955 -13.000 0.846 NA   NA
 5854642 5854643 HPP12_1312 HPP12_1313     TRUE 0.877 7.000 0.017 NA   NA
 5854643 5854644 HPP12_1313 HPP12_1314     FALSE 0.041 221.000 0.000 NA   NA
 5854644 5854645 HPP12_1314 HPP12_1315     FALSE 0.265 45.000 0.000 NA   NA
 5854645 5854646 HPP12_1315 HPP12_1316     TRUE 0.775 9.000 0.000 NA   NA
 5854646 5854647 HPP12_1316 HPP12_1317     FALSE 0.228 53.000 0.000 NA   NA
 5854647 5854648 HPP12_1317 HPP12_1318     TRUE 0.861 -25.000 0.000 0.052   NA
 5854648 10784755 HPP12_1318 HPP12_1319     FALSE 0.086 120.000 0.000 NA   NA
 5854649 5854650 HPP12_1320 HPP12_1321     TRUE 0.951 3.000 0.333 NA   NA
 5854650 5854651 HPP12_1321 HPP12_1322     TRUE 0.957 -7.000 0.500 NA   NA
 5854651 5854652 HPP12_1322 HPP12_1323   virB2-2 TRUE 0.954 -12.000 0.750 NA   NA
 5854652 5854653 HPP12_1323 HPP12_1324 virB2-2 virB3-2 TRUE 0.971 12.000 0.750 NA   NA
 5854653 5854654 HPP12_1324 HPP12_1325 virB3-2   TRUE 0.976 12.000 1.000 NA   NA
 5854654 5854655 HPP12_1325 HPP12_1326   virB4-2 TRUE 0.970 0.000 0.500 NA   NA
 5854655 5854656 HPP12_1326 HPP12_1327 virB4-2 virB7-2 TRUE 0.806 -3.000 0.000 NA   NA
 5854656 5854657 HPP12_1327 HPP12_1328 virB7-2 virB8-2 TRUE 0.739 -7.000 0.000 NA   NA
 5854657 5854658 HPP12_1328 HPP12_1329 virB8-2 virB9-2 TRUE 0.974 -3.000 0.667 NA   NA
 5854658 5854659 HPP12_1329 HPP12_1330 virB9-2 virB10-2 TRUE 0.931 -33.000 1.000 NA   NA
 5854659 5854660 HPP12_1330 HPP12_1331 virB10-2   TRUE 0.951 -16.000 1.000 NA   NA
 5854660 5854661 HPP12_1331 HPP12_1332     TRUE 0.436 -96.000 0.000 NA   NA
 5854661 5854662 HPP12_1332 HPP12_1333     TRUE 0.747 13.000 0.000 NA   NA
 5854662 5854663 HPP12_1333 HPP12_1334     TRUE 0.957 17.000 1.000 NA   NA
 5854663 5854664 HPP12_1334 HPP12_1335   virB11-3 TRUE 0.975 5.000 1.000 NA   NA
 5854664 5854665 HPP12_1335 HPP12_1336 virB11-3   TRUE 0.981 -3.000 1.000 NA   NA
 5854665 5854666 HPP12_1336 HPP12_1337   virD4-2 TRUE 0.981 -3.000 1.000 NA   NA
 5854666 10784756 HPP12_1337 HPP12_1338 virD4-2   TRUE 0.564 21.000 0.000 NA   NA
 10784756 5854667 HPP12_1338 HPP12_1339     FALSE 0.217 55.000 0.000 NA   NA
 5854667 5854668 HPP12_1339 HPP12_1340     TRUE 0.901 -30.000 0.500 NA   NA
 5854669 5854670 HPP12_1341 HPP12_1342     TRUE 0.574 -22.000 0.000 NA   NA
 5854670 5854671 HPP12_1342 HPP12_1343     TRUE 0.451 -67.000 0.000 NA   NA
 5854673 5854674 HPP12_1345 HPP12_1346     TRUE 0.514 103.000 0.667 NA   NA
 5854675 5854676 HPP12_1347 HPP12_1348     TRUE 0.767 8.000 0.000 NA   NA
 5854676 5854677 HPP12_1348 HPP12_1349     FALSE 0.077 129.000 0.000 NA   NA
 5854677 5854678 HPP12_1349 HPP12_1350     TRUE 0.763 -72.000 0.085 NA   NA
 5854680 5854681 HPP12_1353 HPP12_1354 virD2-2 nadC FALSE 0.025 1618.000 0.000 NA N NA
 5854681 5854682 HPP12_1354 HPP12_1355 nadC nadA TRUE 0.994 0.000 0.198 0.003 Y NA
 5854682 5854683 HPP12_1355 HPP12_1356 nadA psd TRUE 0.905 -10.000 0.018 1.000 N NA
 5854683 5854684 HPP12_1356 HPP12_1357 psd   TRUE 0.946 -6.000 0.079 1.000   NA
 5854684 5854685 HPP12_1357 HPP12_1358     TRUE 0.966 13.000 0.727 NA   NA
 5854685 5854686 HPP12_1358 HPP12_1359   ubiA TRUE 0.722 -64.000 0.038 NA   NA
 5854686 5854687 HPP12_1359 HPP12_1360 ubiA comE TRUE 0.543 27.000 0.009 NA   NA
 5854687 5854688 HPP12_1360 HPP12_1361 comE dnaB TRUE 0.911 -3.000 0.023 NA   NA
 5854688 5854689 HPP12_1361 HPP12_1362 dnaB   TRUE 0.892 11.000 0.010 NA N NA
 5854689 5854690 HPP12_1362 HPP12_1363     TRUE 0.873 3.000 0.010 NA N NA
 5854690 5854691 HPP12_1363 HPP12_1364     TRUE 0.852 56.000 0.769 1.000 Y NA
 5854692 5854693 HPP12_1365 HPP12_1366 mod-3 res-2 TRUE 0.946 11.000 0.000 0.051   NA
 5854694 5854695 HPP12_1367 HPP12_1368 mreC mreB TRUE 0.978 4.000 0.689 1.000 N NA
 5854695 5854696 HPP12_1368 HPP12_1369 mreB clpX TRUE 0.816 43.000 0.034 0.090 N NA
 5854696 5854697 HPP12_1369 HPP12_1370 clpX lpxA TRUE 0.895 2.000 0.006 1.000 N NA
 5854697 5854698 HPP12_1370 HPP12_1371 lpxA fabZ TRUE 0.917 3.000 0.013 1.000 N NA
 5854698 5854699 HPP12_1371 HPP12_1372 fabZ fliW-2 FALSE 0.110 181.000 0.017 NA   NA
 5854700 5854701 HPP12_1373 HPP12_1374 comL lon TRUE 0.596 42.000 0.062 NA   NA
 5854701 5854702 HPP12_1374 HPP12_1375 lon tyrA TRUE 0.925 9.000 0.011 1.000 N NA
 5854703 5854704 HPP12_1376 HPP12_1377   mod-4 FALSE 0.202 266.000 0.130 1.000 N NA
 5854704 10784758 HPP12_1377 HPP12_1378 mod-4   TRUE 0.747 3.000 0.000 NA   NA
 5854705 5854706 HPP12_1379 HPP12_1380 bioB rbn TRUE 0.931 0.000 0.017 1.000   NA
 5854707 5854708 HPP12_r4 HPP12_r5     FALSE 0.036 240.000 0.000 NA   NA
 5854709 5854710 HPP12_1381 HPP12_1382     TRUE 0.805 0.000 0.000 NA   NA
 5854710 5854711 HPP12_1382 HPP12_1383     FALSE 0.348 140.000 0.400 NA   NA
 5854711 5854712 HPP12_1383 HPP12_1384     TRUE 0.629 -15.000 0.000 NA   NA
 5854714 5854715 HPP12_1386 HPP12_1387   miaA FALSE 0.259 71.000 0.009 NA   NA
 5854715 5854716 HPP12_1387 HPP12_1388 miaA   TRUE 0.878 12.000 0.000 1.000 N NA
 5854717 5854718 HPP12_1389 HPP12_1390     TRUE 0.708 -19.000 0.000 1.000   NA
 5854718 5854719 HPP12_1390 HPP12_1391   murB FALSE 0.201 90.000 0.000 1.000   NA
 5854719 5854720 HPP12_1391 HPP12_1392 murB fliQ TRUE 0.950 4.000 0.066 1.000 N NA
 5854720 5854721 HPP12_1392 HPP12_1393 fliQ fliI TRUE 0.975 11.000 0.145 1.000 Y NA
 5854721 5854722 HPP12_1393 HPP12_1394 fliI virB11-4 TRUE 0.988 1.000 0.216 0.090 Y NA
 5854722 5854723 HPP12_1394 HPP12_1395 virB11-4 ileS TRUE 0.973 17.000 0.242 0.090 N NA
 5854723 5854724 HPP12_1395 HPP12_1396 ileS   TRUE 0.807 25.000 0.013 1.000 Y NA
 5854726 5854727 HPP12_1398 HPP12_1399     FALSE 0.036 237.000 0.000 NA   NA
 5854727 5854728 HPP12_1399 HPP12_1400     FALSE 0.071 187.000 0.004 NA   NA
 5854728 5854729 HPP12_1400 HPP12_1401     TRUE 0.917 -3.000 0.009 1.000   NA
 5854729 5854730 HPP12_1401 HPP12_1402     TRUE 0.923 -16.000 0.222 1.000   NA
 5854730 5854731 HPP12_1402 HPP12_1403   ksgA TRUE 0.662 38.000 0.028 1.000   NA
 5854732 5854733 HPP12_1404 HPP12_1405     TRUE 0.417 -226.000 0.000 NA   NA
 5854733 5854734 HPP12_1405 HPP12_1406     FALSE 0.035 242.000 0.000 NA   NA
 5854735 5854736 HPP12_1407 HPP12_1408     TRUE 0.805 0.000 0.000 NA   NA
 5854736 5854737 HPP12_1408 HPP12_1409   purU TRUE 0.893 1.000 0.024 NA   NA
 5854737 5854738 HPP12_1409 HPP12_1410 purU sppA TRUE 0.933 3.000 0.028 1.000 N NA
 5854739 5854740 HPP12_1411 HPP12_1412     FALSE 0.045 205.000 0.000 NA   NA
 5854740 5854741 HPP12_1412 HPP12_1413     TRUE 0.656 -13.000 0.000 NA   NA
 5854741 5854742 HPP12_1413 HPP12_1414     TRUE 0.957 9.000 0.308 NA   NA
 5854742 5854743 HPP12_1414 HPP12_1415     FALSE 0.361 33.000 0.000 NA   NA
 5854743 5854744 HPP12_1415 HPP12_1416     TRUE 0.780 11.000 0.000 NA   NA
 5854744 5854745 HPP12_1416 HPP12_1417     TRUE 0.590 -19.000 0.000 NA   NA
 5854746 5854747 HPP12_r6 HPP12_1418     FALSE 0.021 498.000 0.000 NA   NA
 5854748 5854749 HPP12_1419 HPP12_1420 ppiA csrA TRUE 0.900 19.000 0.060 1.000 N NA
 5854749 5854750 HPP12_1420 HPP12_1421 csrA   TRUE 0.945 1.000 0.036 1.000 N NA
 5854750 5854751 HPP12_1421 HPP12_1422     TRUE 0.952 -3.000 0.028 1.000 N NA
 5854751 5854752 HPP12_1422 HPP12_1423   exbB-3 TRUE 0.918 3.000 0.014 1.000 N NA
 5854752 5854753 HPP12_1423 HPP12_1424 exbB-3 exbD-3 TRUE 0.993 11.000 0.452 0.029 Y NA
 5854753 5854754 HPP12_1424 HPP12_1425 exbD-3 rnpA FALSE 0.146 166.000 0.003 1.000 N NA
 5854754 5854755 HPP12_1425 HPP12_1426 rnpA   TRUE 0.940 -13.000 0.540 NA   NA
 5854755 5854756 HPP12_1426 HPP12_1427   yidC TRUE 0.960 6.000 0.461 NA   NA
 5854756 5854757 HPP12_1427 HPP12_1428 yidC   TRUE 0.936 0.000 0.061 NA   NA
 5854757 5854758 HPP12_1428 HPP12_1429   thdF TRUE 0.760 -40.000 0.049 NA   NA
 5854758 5854759 HPP12_1429 HPP12_1430 thdF homD FALSE 0.044 206.000 0.000 NA   NA
 5854760 5854761 HPP12_1431 HPP12_1432     FALSE 0.020 612.000 0.000 NA   NA
 5854761 5854762 HPP12_1432 HPP12_1433     TRUE 0.977 10.000 0.889 NA   NA
 5854762 5854763 HPP12_1433 HPP12_1434     TRUE 0.976 8.000 1.000 NA   NA
 5854763 5854764 HPP12_1434 HPP12_1435     TRUE 0.763 24.000 0.063 NA   NA
 5854764 5854765 HPP12_1435 HPP12_1436     FALSE 0.023 416.000 0.000 NA   NA
 5854765 5854766 HPP12_1436 HPP12_1437     TRUE 0.708 55.000 0.206 1.000 N NA
 5854766 5854767 HPP12_1437 HPP12_1438   dnaE TRUE 0.837 -18.000 0.010 1.000 N NA
 5854769 5854770 HPP12_1440 HPP12_1441     TRUE 0.914 17.000 0.250 NA   NA
 5854770 5854771 HPP12_1441 HPP12_1442     TRUE 0.945 3.000 0.258 NA   NA
 5854771 5854772 HPP12_1442 HPP12_1443     TRUE 0.969 -15.000 0.912 NA Y NA
 5854772 5854773 HPP12_1443 HPP12_1444     TRUE 0.987 0.000 0.912 NA Y NA
 5854775 5854776 HPP12_1446 HPP12_1447 ilvE horJ TRUE 0.531 49.000 0.060 NA   NA
 5854776 5854777 HPP12_1447 HPP12_1448 horJ polA FALSE 0.139 115.000 0.008 NA   NA
 5854777 5854778 HPP12_1448 HPP12_1449 polA   TRUE 0.589 66.000 0.005 0.049   NA
 5854778 5854779 HPP12_1449 HPP12_1450     TRUE 0.987 -3.000 0.235 0.049   NA
 5854779 5854780 HPP12_1450 HPP12_1451     TRUE 0.698 34.000 0.091 NA   NA
 5854780 5854781 HPP12_1451 HPP12_1452   tmk TRUE 0.814 -12.000 0.014 NA   NA
 5854781 5854782 HPP12_1452 HPP12_1453 tmk   TRUE 0.937 2.000 0.034 1.000 N NA
 5854782 5854783 HPP12_1453 HPP12_1454   ubiD TRUE 0.966 0.000 0.032 1.000 Y NA
 5854783 5854784 HPP12_1454 HPP12_1455 ubiD flgA TRUE 0.958 10.000 0.191 NA N NA
 5854784 5854785 HPP12_1455 HPP12_1456 flgA   TRUE 0.939 -3.000 0.036 NA N NA
 5854785 5854786 HPP12_1456 HPP12_1457     TRUE 0.931 0.000 0.017 1.000   NA
 5854786 5854787 HPP12_1457 HPP12_1458   serS TRUE 0.893 10.000 0.005 1.000   NA
 5854787 5854788 HPP12_1458 HPP12_1459 serS   TRUE 0.903 1.000 0.010 1.000   NA
 5854788 5854789 HPP12_1459 HPP12_1460     TRUE 0.927 4.000 0.032 1.000   NA
 5854789 5854790 HPP12_1460 HPP12_1461   ubiE TRUE 0.918 10.000 0.008 1.000 N NA
 5854790 5854791 HPP12_1461 HPP12_1462 ubiE   TRUE 0.549 27.000 0.009 NA   NA
 5854791 5854792 HPP12_1462 HPP12_1463     TRUE 0.900 11.000 0.024 NA   NA
 5854792 5854793 HPP12_1463 HPP12_1464     TRUE 0.829 -13.000 0.024 NA   NA
 5854793 5854794 HPP12_1464 HPP12_1465     TRUE 0.976 -3.000 0.743 NA   NA
 5854794 5854795 HPP12_1465 HPP12_1466     TRUE 0.970 12.000 0.729 NA   NA
 5854795 5854796 HPP12_1466 HPP12_1467     TRUE 0.976 12.000 0.464 1.000 N NA
 5854796 5854797 HPP12_1467 HPP12_1468     TRUE 0.922 16.000 0.082 1.000   NA
 5854797 5854798 HPP12_1468 HPP12_1469     TRUE 0.411 103.000 0.099 1.000   NA
 5854799 5854800 HPP12_1470 HPP12_1471     TRUE 0.953 12.000 0.107 1.000   NA
 5854800 5854801 HPP12_1471 HPP12_1472   murE TRUE 0.938 4.000 0.057 1.000   NA
 5854801 5854802 HPP12_1472 HPP12_1473 murE tal TRUE 0.967 3.000 0.016 0.037 N NA
 5854802 5854803 HPP12_1473 HPP12_1474 tal rplY TRUE 0.523 55.000 0.017 1.000 N NA
 5854803 5854804 HPP12_1474 HPP12_1475 rplY pth TRUE 0.993 10.000 0.496 0.035 Y NA
 5854804 5854805 HPP12_1475 HPP12_1476 pth   TRUE 0.936 10.000 0.031 1.000   NA
 5854805 5854806 HPP12_1476 HPP12_1477     FALSE 0.187 115.000 0.005 1.000   NA
 5854806 5854807 HPP12_1477 HPP12_1478     FALSE 0.154 77.000 0.000 NA   NA
 5854810 5854811 HPP12_1481 HPP12_1482 fixI   TRUE 0.745 25.000 0.023 1.000   NA
 5854811 5854812 HPP12_1482 HPP12_1483     TRUE 0.849 -18.000 0.026 1.000   NA
 5854812 5854813 HPP12_1483 HPP12_1484   gltS TRUE 0.974 -3.000 0.219 1.000 N NA
 5854816 5854817 HPP12_1487 HPP12_1488   folB TRUE 0.961 -3.000 0.096 1.000   NA
 5854817 5854818 HPP12_1488 HPP12_1489 folB   TRUE 0.839 -16.000 0.049 NA   NA
 5854818 5854819 HPP12_1489 HPP12_1490   frpB-4 TRUE 0.449 154.000 1.000 NA   NA
 5854819 5854820 HPP12_1490 HPP12_1491 frpB-4 selA FALSE 0.064 228.000 0.000 1.000   NA
 5854820 5854821 HPP12_1491 HPP12_1492 selA nusA FALSE 0.286 97.000 0.007 1.000 N NA
 5854821 5854822 HPP12_1492 HPP12_1493 nusA   FALSE 0.277 57.000 0.003 NA   NA
 5854823 5854824 HPP12_1494 HPP12_1495     FALSE 0.030 292.000 0.000 NA   NA
 5854824 5854825 HPP12_1495 HPP12_1496   res-4 FALSE 0.267 134.000 0.125 NA   NA
 5854825 5854826 HPP12_1496 HPP12_1497 res-4 mod-5 TRUE 0.987 3.000 0.429 0.049 N NA
 5854826 5854827 HPP12_1497 HPP12_1498 mod-5 recG TRUE 0.872 49.000 0.087 0.049 Y NA
 5854828 5854829 HPP12_1499 HPP12_1500     TRUE 0.974 4.000 1.000 NA   NA
 5854832 5854833 HPP12_1502 HPP12_1503   dnaA FALSE 0.039 229.000 0.000 NA   NA
 5854834 5854835 HPP12_1504 HPP12_1505     TRUE 0.665 43.000 0.172 NA   NA
 5854835 5854836 HPP12_1505 HPP12_1506   glmS TRUE 0.943 1.000 0.167 NA   NA
 5854836 5854837 HPP12_1506 HPP12_1507 glmS   TRUE 0.823 22.000 0.018 1.000 N NA
 5854838 5854839 HPP12_1508 HPP12_1509 hsdS-4 hsdM-3 TRUE 0.972 -3.000 0.000 0.049 Y NA
 10784759 5854840 HPP12_1510 HPP12_1511     TRUE 0.805 0.000 0.000 NA   NA
 10784760 5854841 HPP12_1512 HPP12_1513   rocF FALSE 0.026 350.000 0.000 NA   NA
 5854842 5854843 HPP12_1514 HPP12_1515 ald   TRUE 0.428 115.000 0.462 NA   NA
 5854843 5854844 HPP12_1515 HPP12_1516     TRUE 0.902 -22.000 0.375 NA   NA
 5854844 5854845 HPP12_1516 HPP12_1517     FALSE 0.284 151.000 0.250 NA   NA
 5854847 5854848 HPP12_1519 HPP12_1520   recN TRUE 0.919 17.000 0.066 1.000 N NA
 5854848 5854849 HPP12_1520 HPP12_1521 recN   TRUE 0.938 -3.000 0.035 NA N NA
 5854849 5854850 HPP12_1521 HPP12_1522     TRUE 0.706 19.000 0.008 NA   NA
 5854851 5854852 HPP12_1523 HPP12_1524     TRUE 0.944 13.000 0.241 NA   NA
 5854852 5854853 HPP12_1524 HPP12_1525   fbp TRUE 0.977 0.000 0.778 NA   NA
 5854854 5854855 HPP12_1526 HPP12_1527 rpe   TRUE 0.882 -130.000 0.279 1.000 N NA
 5854856 5854857 HPP12_1528 HPP12_1529     FALSE 0.049 243.000 0.002 NA   NA
 5854857 5854858 HPP12_1529 HPP12_1530   rpsB TRUE 0.988 0.000 0.748 1.000 Y NA
 5854859 5854860 HPP12_1531 HPP12_1532 pcrA nhaA TRUE 0.803 24.000 0.026 1.000 N NA
 5854860 5854861 HPP12_1532 HPP12_1533 nhaA yajC TRUE 0.427 48.000 0.009 NA N NA
 5854861 5854862 HPP12_1533 HPP12_1534 yajC secD TRUE 0.963 -3.000 0.068 NA Y NA
 5854862 5854863 HPP12_1534 HPP12_1535 secD secF TRUE 0.995 9.000 0.436 0.001 Y NA
 5854863 5854864 HPP12_1535 HPP12_1536 secF   TRUE 0.970 10.000 0.667 NA   NA
 5854864 5854865 HPP12_1536 HPP12_1537   leuS TRUE 0.897 10.000 0.021 NA   NA
 5854865 5854866 HPP12_1537 HPP12_1538 leuS   TRUE 0.921 -3.000 0.031 NA   NA
 5854866 5854867 HPP12_1538 HPP12_1539   folC TRUE 0.903 -10.000 0.084 NA   NA
 5854867 5854868 HPP12_1539 HPP12_1540 folC   TRUE 0.957 0.000 0.071 1.000   NA
 5854868 5854869 HPP12_1540 HPP12_1541     TRUE 0.994 9.000 0.909 0.007   NA
 5854869 5854870 HPP12_1541 HPP12_1542     TRUE 0.818 -81.000 0.244 NA   NA
 5854870 5854871 HPP12_1542 HPP12_1543   mfd TRUE 0.905 4.000 0.023 NA N NA
 5854871 5854872 HPP12_1543 HPP12_1544 mfd petA FALSE 0.217 126.000 0.008 1.000 N NA
 5854872 5854873 HPP12_1544 HPP12_1545 petA   TRUE 0.992 11.000 0.093 0.002 Y NA
 5854873 5854874 HPP12_1545 HPP12_1546     TRUE 0.993 -3.000 0.103 0.002 Y NA
 5854875 5854876 HPP12_1547 HPP12_1548   ftsI FALSE 0.026 329.000 0.000 NA   NA
 5854876 5854877 HPP12_1548 HPP12_1549 ftsI fliE FALSE 0.403 156.000 0.303 1.000 N NA
 5854877 5854878 HPP12_1549 HPP12_1550 fliE flgC TRUE 0.774 128.000 0.271 0.005 Y NA
 5854878 5854879 HPP12_1550 HPP12_1551 flgC flgB TRUE 0.995 13.000 0.804 0.005 Y NA
 5854882 5854883 HPP12_1554 HPP12_1555     FALSE 0.161 148.000 0.016 NA N NA
 5854884 5854885 HPP12_1556 HPP12_1557 pbp2   TRUE 0.917 -3.000 0.027 NA   NA
 5854885 5854886 HPP12_1557 HPP12_1558   engB TRUE 0.859 12.000 0.010 NA   NA
 5854886 5854887 HPP12_1558 HPP12_1559 engB   TRUE 0.928 -3.000 0.041 NA   NA
 5854887 5854888 HPP12_1559 HPP12_1560     TRUE 0.926 0.000 0.038 NA   NA
 5854888 5854889 HPP12_1560 HPP12_1561     TRUE 0.906 -25.000 0.471 NA   NA
 5854889 5854890 HPP12_1561 HPP12_1562   rlpA TRUE 0.928 -3.000 0.042 NA   NA
 5854890 5854891 HPP12_1562 HPP12_1563 rlpA dniR TRUE 0.937 0.000 0.062 NA   NA
 5854891 5854892 HPP12_1563 HPP12_1564 dniR   FALSE 0.248 88.000 0.015 NA   NA
 5854893 5854894 HPP12_1565 HPP12_1566 ribC flhB-2 TRUE 0.896 1.000 0.009 1.000   NA
 5854894 5854895 HPP12_1566 HPP12_1567 flhB-2   TRUE 0.853 22.000 0.066 1.000   NA
 5854895 5854896 HPP12_1567 HPP12_1568     TRUE 0.975 2.000 0.274 1.000 Y NA
 5854897 5854898 HPP12_1569 HPP12_1570     TRUE 0.714 49.000 0.500 NA   NA
 5854898 5854899 HPP12_1570 HPP12_1571     TRUE 0.971 10.000 0.700 NA   NA
 5854899 5854900 HPP12_1571 HPP12_1572     TRUE 0.913 -69.000 0.538 1.000 N NA
 5854901 5854902 HPP12_1573 HPP12_1574 pdxJ pdxA TRUE 0.989 2.000 0.048 0.001 Y NA
 5854902 5854903 HPP12_1574 HPP12_1575 pdxA ydiE FALSE 0.406 65.000 0.007 1.000 N NA
 5854903 5854904 HPP12_1575 HPP12_1576 ydiE flgG-2 FALSE 0.138 179.000 0.004 1.000 N NA
 5854905 5854906 HPP12_1577 HPP12_1578     FALSE 0.038 231.000 0.000 NA   NA
 5854906 5854907 HPP12_1578 HPP12_1579     TRUE 0.532 -31.000 0.000 NA   NA
 5854907 5854908 HPP12_1579 HPP12_1580     FALSE 0.026 351.000 0.000 NA   NA
 5854908 5854909 HPP12_1580 HPP12_1581     TRUE 0.600 86.000 0.714 NA   NA
 5854909 5853301 HPP12_1581 HPP12_0001   nusB FALSE 0.028 313.000 0.000 NA   NA
 5854910 5854911 HPP12_p01 HPP12_p02     TRUE 0.942 12.000 0.143 NA   NA
 5854911 5854912 HPP12_p02 HPP12_p03     FALSE 0.139 85.000 0.000 NA   NA
 5854912 5854913 HPP12_p03 HPP12_p04     FALSE 0.054 172.000 0.000 NA   NA
 5854913 5854914 HPP12_p04 HPP12_p05     TRUE 0.413 -739.000 0.000 NA   NA
 5854914 5854915 HPP12_p05 HPP12_p06     TRUE 0.978 10.000 1.000 NA   NA
 5854915 5854916 HPP12_p06 HPP12_p07     FALSE 0.019 693.000 0.000 NA   NA
 5854917 5854918 HPP12_p08 HPP12_p09     TRUE 0.775 9.000 0.000 NA   NA
 5854918 5854919 HPP12_p09 HPP12_p10     FALSE 0.019 1946.000 0.000 NA   NA
 5854919 5854920 HPP12_p10 HPP12_p11     TRUE 0.709 42.000 0.100 1.000   NA