MicrobesOnline Operon Predictions for Wolbachia endosymbiont of Culex quinquefasciatus JHB

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 6344381 6344382 C1A_290 C1A_t10   trnS TRUE 0.523 32.000 0.000 NA   NA
 6344382 6344383 C1A_t10 C1A_291 trnS   FALSE 0.018 355.000 0.000 NA   NA
 6344383 6344384 C1A_291 C1A_292     TRUE 0.775 -37.000 0.000 NA   NA
 6344393 6344394 C1A_301 C1A_302     TRUE 0.830 71.000 0.068 0.003 Y NA
 6344395 6344396 C1A_303 C1A_304   surE FALSE 0.216 102.000 0.000 NA   NA
 6344397 6344398 C1A_305 C1A_306 hisS   TRUE 0.862 -3.000 0.004 1.000 N NA
 6344399 6344400 C1A_307 C1A_308     FALSE 0.227 91.000 0.000 NA   NA
 6344400 6344401 C1A_308 C1A_309     FALSE 0.042 248.000 0.000 NA   NA
 6344401 6344402 C1A_309 C1A_310     FALSE 0.037 258.000 0.000 NA   NA
 6344402 6344403 C1A_310 C1A_311     FALSE 0.020 345.000 0.000 NA   NA
 6344403 6344404 C1A_311 C1A_312     TRUE 0.571 27.000 0.000 NA   NA
 6344404 6344405 C1A_312 C1A_313   petB FALSE 0.185 123.000 0.000 NA   NA
 6344405 6344406 C1A_313 C1A_314 petB petC TRUE 0.999 0.000 0.630 0.004 Y NA
 6344406 6344407 C1A_314 C1A_315 petC uvrB FALSE 0.010 86.000 0.002 1.000 N NA
 6344407 6344408 C1A_315 C1A_316 uvrB   FALSE 0.020 307.000 0.000 NA N NA
 6344408 6344409 C1A_316 C1A_317     TRUE 0.500 39.000 0.005 NA N NA
 6344409 6344410 C1A_317 C1A_318     FALSE 0.100 171.000 0.000 NA   NA
 6344410 6344411 C1A_318 C1A_319   nlpD FALSE 0.328 53.000 0.000 NA   NA
 6344411 6344412 C1A_319 C1A_320 nlpD leuS FALSE 0.048 134.000 0.003 1.000   NA
 6344412 6344413 C1A_320 C1A_321 leuS   FALSE 0.012 121.000 0.002 1.000   NA
 6344413 6344414 C1A_321 C1A_322     FALSE 0.194 117.000 0.000 NA   NA
 6344415 6344416 C1A_323 C1A_324 folD ubiX TRUE 0.989 -16.000 0.120 1.000 Y NA
 6344416 6344417 C1A_324 C1A_325 ubiX   TRUE 0.988 -7.000 0.120 NA   NA
 6344417 6344418 C1A_325 C1A_326     TRUE 0.962 10.000 0.012 NA   NA
 6344418 6344419 C1A_326 C1A_327   argD TRUE 0.444 69.000 0.008 NA N NA
 6344419 6344420 C1A_327 C1A_328 argD ndk FALSE 0.074 123.000 0.000 1.000 N NA
 6344421 6344422 C1A_329 C1A_330   hemH TRUE 0.954 -3.000 0.005 NA   NA
 6344422 6344423 C1A_330 C1A_331 hemH   TRUE 0.396 62.000 0.005 NA   NA
 6344425 6344426 C1A_333 C1A_334 hslV hslU TRUE 0.999 2.000 0.752 1.000 Y NA
 6344427 6344428 C1A_335 C1A_336   ispA TRUE 0.981 -7.000 0.062 1.000   NA
 6344429 6344430 C1A_337 C1A_338 acpP fabF TRUE 0.994 7.000 0.106 1.000 Y NA
 6344430 6344431 C1A_338 C1A_339 fabF murA FALSE 0.004 643.000 0.000 1.000 N NA
 6344431 6344432 C1A_339 C1A_340 murA thyX TRUE 0.902 10.000 0.007 1.000 N NA
 6344433 6344434 C1A_341 C1A_342     FALSE 0.016 380.000 0.000 NA   NA
 6344434 6344435 C1A_342 C1A_343     TRUE 0.885 10.000 0.000 NA   NA
 6344435 6344436 C1A_343 C1A_344     FALSE 0.139 145.000 0.000 NA   NA
 6344437 6344438 C1A_345 C1A_346 priA   FALSE 0.183 124.000 0.000 NA   NA
 6344438 6344439 C1A_346 C1A_347     FALSE 0.011 559.000 0.000 NA   NA
 6344439 6344440 C1A_347 C1A_348   recR FALSE 0.018 364.000 0.000 NA   NA
 6344440 6344441 C1A_348 C1A_349 recR   FALSE 0.192 119.000 0.000 NA   NA
 6344441 6344442 C1A_349 C1A_350     FALSE 0.310 56.000 0.000 NA   NA
 6344442 6344443 C1A_350 C1A_351   htpG FALSE 0.117 159.000 0.000 NA   NA
 6344443 6344444 C1A_351 C1A_352 htpG   FALSE 0.337 39.000 0.003 NA   NA
 6344444 6344445 C1A_352 C1A_353     FALSE 0.129 151.000 0.000 NA   NA
 6344445 6344446 C1A_353 C1A_354     TRUE 0.616 25.000 0.000 NA   NA
 6344446 6344447 C1A_354 C1A_355   hemA TRUE 0.736 65.000 0.074 NA   NA
 6344448 6344449 C1A_356 C1A_357   efp TRUE 0.986 1.000 0.047 1.000 N NA
 6344449 6344450 C1A_357 C1A_358 efp rimM TRUE 0.517 60.000 0.003 1.000 Y NA
 6344453 6344454 C1A_361 C1A_362     FALSE 0.019 354.000 0.000 NA   NA
 6344454 6344455 C1A_362 C1A_363     FALSE 0.252 73.000 0.000 NA   NA
 6344455 6344456 C1A_363 C1A_364     FALSE 0.201 112.000 0.000 NA   NA
 6344456 6344457 C1A_364 C1A_365     FALSE 0.031 285.000 0.000 NA   NA
 6344458 6344459 C1A_366 C1A_367   aceF FALSE 0.304 58.000 0.000 NA   NA
 6344459 6344460 C1A_367 C1A_368 aceF   FALSE 0.031 285.000 0.000 NA   NA
 6344462 6344463 C1A_370 C1A_371 ftsH tilS TRUE 0.974 13.000 0.145 1.000 N NA
 6344463 6344464 C1A_371 C1A_372 tilS   FALSE 0.022 143.000 0.003 1.000 N NA
 6344465 6344466 C1A_373 C1A_374   mreB TRUE 0.593 21.000 0.005 1.000 N NA
 6344466 6344467 C1A_374 C1A_375 mreB trmU FALSE 0.019 220.000 0.000 1.000 N NA
 6344467 6344468 C1A_375 C1A_376 trmU   FALSE 0.199 113.000 0.000 NA   NA
 6344468 6344469 C1A_376 C1A_377   ppa FALSE 0.279 81.000 0.004 NA   NA
 6344469 6344470 C1A_377 C1A_t11 ppa trnS FALSE 0.219 99.000 0.000 NA   NA
 6344470 6344471 C1A_t11 C1A_378 trnS   FALSE 0.133 149.000 0.000 NA   NA
 6344471 6344472 C1A_378 C1A_379     FALSE 0.333 34.000 0.000 1.000   NA
 6344472 6344473 C1A_379 C1A_380     FALSE 0.307 -16.000 0.002 1.000   NA
 6344473 6344474 C1A_380 C1A_381     FALSE 0.003 900.000 0.000 1.000 N NA
 6344476 6344477 C1A_383 C1A_384     TRUE 0.444 130.000 0.014 NA   NA
 6344477 6344478 C1A_384 C1A_385   lytB FALSE 0.301 59.000 0.000 NA   NA
 6344478 6344479 C1A_385 C1A_386 lytB   FALSE 0.023 328.000 0.000 NA   NA
 6344479 6344480 C1A_386 C1A_387     TRUE 0.929 5.000 0.000 NA   NA
 6344480 6344481 C1A_387 C1A_388     TRUE 0.995 -3.000 0.333 NA   NA
 6344481 6344482 C1A_388 C1A_t12   trnR TRUE 0.840 13.000 0.000 NA   NA
 6344482 6344483 C1A_t12 C1A_389 trnR ssb FALSE 0.261 69.000 0.000 NA   NA
 6344483 6344484 C1A_389 C1A_390 ssb dapA TRUE 0.467 103.000 0.021 1.000 N NA
 6344485 6344486 C1A_391 C1A_392     FALSE 0.003 866.000 0.000 1.000 N NA
 6344486 6344487 C1A_392 C1A_393     TRUE 0.507 70.000 0.010 NA   NA
 6344487 6344488 C1A_393 C1A_394     FALSE 0.065 202.000 0.000 NA   NA
 6344490 6344491 C1A_396 C1A_397     TRUE 0.684 27.000 0.005 NA   NA
 6344492 6344493 C1A_398 C1A_399 dgt ribD TRUE 0.557 18.000 0.004 1.000 N NA
 6344495 6344496 C1A_401 C1A_402 truB rpsO TRUE 0.996 8.000 0.211 1.000 Y NA
 6344496 6344497 C1A_402 C1A_403 rpsO pnp TRUE 0.993 15.000 0.335 1.000 Y NA
 6344498 6344499 C1A_404 C1A_405 rpe   FALSE 0.048 154.000 0.000 1.000 N NA
 6344499 6344500 C1A_405 C1A_406     FALSE 0.248 75.000 0.000 NA   NA
 6344500 6344501 C1A_406 C1A_407   pgk TRUE 0.442 38.000 0.000 NA   NA
 6344501 6344502 C1A_407 C1A_408 pgk glyA FALSE 0.101 77.000 0.000 1.000 N NA
 6344502 6344503 C1A_408 C1A_409 glyA   TRUE 0.756 -28.000 0.000 NA N NA
 6344505 6344506 C1A_411 C1A_412 sugE aspC FALSE 0.036 196.000 0.000 1.000   NA
 6344506 6344507 C1A_412 C1A_413 aspC   FALSE 0.034 271.000 0.000 NA   NA
 6344507 6344508 C1A_413 C1A_414   hemE TRUE 0.492 34.000 0.000 NA   NA
 6344509 6344510 C1A_415 C1A_416     FALSE 0.011 554.000 0.000 NA   NA
 6344510 6344511 C1A_416 C1A_t13   trnR FALSE 0.112 163.000 0.000 NA   NA
 6344512 6344513 C1A_417 C1A_418   murF TRUE 0.822 34.000 0.006 1.000 Y NA
 6344514 6344515 C1A_419 C1A_420     TRUE 0.998 4.000 0.667 NA   NA
 6344515 6344516 C1A_420 C1A_421     TRUE 0.913 7.000 0.003 NA   NA
 6344516 6344517 C1A_421 C1A_422   nuoA FALSE 0.162 93.000 0.005 1.000 N NA
 6344517 6344518 C1A_422 C1A_423 nuoA nuoB TRUE 0.997 -9.000 0.507 0.008 Y NA
 6344518 6344519 C1A_423 C1A_424 nuoB nuoC TRUE 0.998 2.000 0.328 0.008 Y NA
 6344519 6344520 C1A_424 C1A_425 nuoC mdh TRUE 0.987 4.000 0.007 1.000 Y NA
 6344521 6344522 C1A_426 C1A_427     TRUE 0.970 -10.000 0.004 NA Y NA
 6344522 6344523 C1A_427 C1A_428     FALSE 0.344 66.000 0.005 NA   NA
 6344524 6344525 C1A_429 C1A_430   tyrS FALSE 0.015 400.000 0.000 NA   NA
 6344530 6344531 C1A_435 C1A_436 mpg   FALSE 0.155 136.000 0.000 NA   NA
 6344532 6344533 C1A_437 C1A_438 mraY rnhB FALSE 0.290 6.000 0.002 1.000 N NA
 6344534 6344535 C1A_439 C1A_440 virB9   FALSE 0.022 329.000 0.000 NA   NA
 6344535 6344536 C1A_440 C1A_441     TRUE 0.601 72.000 0.018 NA   NA
 6344539 6344540 C1A_444 C1A_445 trmD rplS TRUE 0.998 -3.000 0.567 1.000 Y NA
 6344540 6344541 C1A_445 C1A_446 rplS   FALSE 0.014 253.000 0.000 1.000 N NA
 6344541 6344542 C1A_446 C1A_447     TRUE 0.896 -3.000 0.005 1.000 N NA
 6344543 6344544 C1A_448 C1A_449 pdxH mutM TRUE 0.422 16.000 0.003 1.000 N NA
 6344544 6344545 C1A_449 C1A_450 mutM   TRUE 0.728 -34.000 0.003 NA   NA
 6344546 6344547 C1A_t14 C1A_451 trnT   FALSE 0.009 854.000 0.000 NA   NA
 6344547 6344548 C1A_451 C1A_452     FALSE 0.011 320.000 0.000 0.088   NA
 6344549 6344550 C1A_453 C1A_454     FALSE 0.025 307.000 0.000 NA   NA
 6344550 6344551 C1A_454 C1A_455   pccB FALSE 0.004 914.000 0.000 1.000   NA
 6344551 6344552 C1A_455 C1A_456 pccB   FALSE 0.181 125.000 0.000 NA   NA
 6344552 6344553 C1A_456 C1A_457     TRUE 0.827 -21.000 0.000 NA   NA
 6344554 6344555 C1A_458 C1A_459     FALSE 0.037 259.000 0.000 NA   NA
 6344555 6344556 C1A_459 C1A_460     FALSE 0.388 42.000 0.000 NA   NA
 6344556 6344557 C1A_460 C1A_461     FALSE 0.074 189.000 0.000 NA   NA
 6344557 6344558 C1A_461 C1A_462     TRUE 0.849 -15.000 0.000 NA   NA
 6344558 6344559 C1A_462 C1A_463   lpdA FALSE 0.010 640.000 0.000 NA   NA
 6344563 6344564 C1A_467 C1A_468 bcp recF TRUE 0.776 9.000 0.004 1.000 N NA
 6344565 6344566 C1A_469 C1A_470 lysC   FALSE 0.093 90.000 0.000 1.000 N NA
 6344566 6344567 C1A_470 C1A_471     TRUE 0.985 6.000 0.057 1.000   NA
 6344570 6344571 C1A_473 C1A_474     FALSE 0.225 46.000 0.002 NA   NA
 6344571 6344572 C1A_474 C1A_475     TRUE 0.713 -15.000 0.002 NA   NA
 6344575 6344576 C1A_478 C1A_479 carB   FALSE 0.078 117.000 0.000 1.000 N NA
 6344576 6344577 C1A_479 C1A_480     TRUE 0.927 -13.000 0.009 1.000   NA
 6344578 6344579 C1A_481 C1A_482     FALSE 0.194 117.000 0.000 NA   NA
 6344582 6344583 C1A_485 C1A_486     FALSE 0.004 510.000 0.000 1.000 N NA
 6344583 6344584 C1A_486 C1A_487   def FALSE 0.282 128.000 0.010 1.000 N NA
 6344585 6344586 C1A_488 C1A_489 ftsA map FALSE 0.344 118.000 0.012 1.000 N NA
 6344589 6344590 C1A_492 C1A_493     FALSE 0.005 820.000 0.000 1.000   NA
 6344591 6344592 C1A_494 C1A_495   pth TRUE 0.998 0.000 0.496 0.065 Y NA
 6344595 6344596 C1A_498 C1A_499 dnaN   FALSE 0.236 112.000 0.004 NA   NA
 6344596 6344597 C1A_499 C1A_500   rpoH TRUE 0.991 -7.000 0.188 NA   NA
 6344597 6344598 C1A_500 C1A_501 rpoH   FALSE 0.011 332.000 0.000 1.000   NA
 6344598 6344599 C1A_501 C1A_502     FALSE 0.021 337.000 0.000 NA   NA
 6344599 6344600 C1A_502 C1A_503   dnaX TRUE 0.977 22.000 0.411 NA   NA
 6344601 6344602 C1A_504 C1A_505     TRUE 0.924 -3.000 0.000 NA   NA
 6344605 6344606 C1A_508 C1A_509     TRUE 0.425 54.000 0.006 NA N NA
 6344607 6344608 C1A_510 C1A_511   folC TRUE 0.926 6.000 0.004 NA N NA
 6344609 6344610 C1A_512 C1A_513     FALSE 0.019 352.000 0.000 NA   NA
 6344610 6344611 C1A_513 C1A_t26   trnL FALSE 0.295 60.000 0.000 NA   NA
 6344613 6344614 C1A_515 C1A_516   petA FALSE 0.012 328.000 0.000 1.000   NA
 6344614 6344615 C1A_516 C1A_517 petA gyrA FALSE 0.044 95.000 0.003 1.000 N NA
 6344615 6344616 C1A_517 C1A_t25 gyrA trnV FALSE 0.335 52.000 0.000 NA   NA
 6344616 6344617 C1A_t25 C1A_518 trnV   FALSE 0.271 65.000 0.000 NA   NA
 6344617 6344618 C1A_518 C1A_519     FALSE 0.147 141.000 0.000 NA   NA
 6344618 6344619 C1A_519 C1A_520     TRUE 0.988 -3.000 0.048 NA   NA
 6344623 6344624 C1A_524 C1A_525 sucD sucC TRUE 0.997 4.000 0.256 0.002 Y NA
 6344624 6344625 C1A_525 C1A_526 sucC rpsU TRUE 0.820 31.000 0.028 1.000   NA
 6344625 6344626 C1A_526 C1A_t24 rpsU trnP FALSE 0.067 199.000 0.000 NA   NA
 6344626 6344627 C1A_t24 C1A_527 trnP   FALSE 0.185 123.000 0.000 NA   NA
 6344627 6344628 C1A_527 C1A_t23   trnE TRUE 0.509 33.000 0.000 NA   NA
 6344628 6344629 C1A_t23 C1A_528 trnE   FALSE 0.287 61.000 0.000 NA   NA
 6344629 6344630 C1A_528 C1A_529     TRUE 0.933 4.000 0.000 NA   NA
 6344630 6344631 C1A_529 C1A_530     FALSE 0.046 235.000 0.000 NA   NA
 6344632 6344633 C1A_531 C1A_532     FALSE 0.012 87.000 0.003 1.000 N NA
 6344633 6344634 C1A_532 C1A_533     TRUE 0.998 -3.000 0.827 1.000 N NA
 6344636 6344637 C1A_535 C1A_536     FALSE 0.341 50.000 0.000 NA   NA
 6344637 6344638 C1A_536 C1A_537     FALSE 0.013 438.000 0.000 NA   NA
 6344638 6344639 C1A_537 C1A_538     FALSE 0.241 78.000 0.000 NA   NA
 6344639 6344640 C1A_538 C1A_539     FALSE 0.010 678.000 0.000 NA   NA
 6344640 6344641 C1A_539 C1A_540     FALSE 0.035 512.000 0.000 0.008 Y NA
 6344641 6344642 C1A_540 C1A_541     FALSE 0.335 33.000 0.000 0.008   NA
 6344642 6344643 C1A_541 C1A_542     FALSE 0.086 177.000 0.000 NA   NA
 6344643 6344644 C1A_542 C1A_543     FALSE 0.057 212.000 0.000 NA   NA
 6344644 6344645 C1A_543 C1A_544     TRUE 0.826 -10.000 0.003 NA   NA
 6344645 6344646 C1A_544 C1A_545     FALSE 0.004 237.000 0.003 1.000 N NA
 6344646 6344647 C1A_545 C1A_546   rpsT TRUE 0.431 44.000 0.007 1.000 N NA
 6344647 6344648 C1A_546 C1A_547 rpsT gltA FALSE 0.076 80.000 0.003 1.000 N NA
 6344649 6344650 C1A_548 C1A_549     TRUE 0.571 27.000 0.000 NA   NA
 6344650 6344651 C1A_549 C1A_550     FALSE 0.049 228.000 0.000 NA   NA
 6344651 6344652 C1A_550 C1A_551   ruvB FALSE 0.035 269.000 0.000 NA   NA
 6344652 6344653 C1A_551 C1A_552 ruvB ruvA TRUE 0.998 -3.000 0.549 0.006 Y NA
 6344654 6344655 C1A_553 C1A_554     TRUE 0.983 2.000 0.027 1.000   NA
 6344656 6344657 C1A_555 C1A_556 uvrD   FALSE 0.341 114.000 0.007 NA   NA
 6344658 6344659 C1A_557 C1A_558 nuoJ nuoK TRUE 0.997 -9.000 0.484 0.008 Y NA
 6344659 6344660 C1A_558 C1A_559 nuoK nuoL TRUE 0.998 0.000 0.451 0.024 Y NA
 6344660 6344661 C1A_559 C1A_560 nuoL nuoM TRUE 0.404 319.000 0.251 0.008 Y NA
 6344661 6344662 C1A_560 C1A_561 nuoM nuoN TRUE 0.985 24.000 0.453 0.008 Y NA
 6344662 6344663 C1A_561 C1A_562 nuoN birA TRUE 0.981 5.000 0.032 1.000 N NA
 6344663 6344664 C1A_562 C1A_563 birA   TRUE 0.984 -3.000 0.024 NA   NA
 6344664 6344665 C1A_563 C1A_564   ccmE FALSE 0.144 203.000 0.008 NA   NA
 6344666 6344667 C1A_565 C1A_566     TRUE 0.953 95.000 1.000 NA   NA
 6344667 6344668 C1A_566 C1A_567     FALSE 0.354 47.000 0.000 NA   NA
 6344668 6344669 C1A_567 C1A_t22   trnA FALSE 0.066 201.000 0.000 NA   NA
 6344670 6344671 C1A_t15 C1A_568 trnK nuoF TRUE 0.765 18.000 0.000 NA   NA
 6344672 6344673 C1A_569 C1A_570 infC thrS TRUE 0.992 13.000 0.186 1.000 Y NA
 6344673 6344674 C1A_570 C1A_571 thrS nuoI FALSE 0.045 186.000 0.004 1.000 N NA
 6344675 6344676 C1A_572 C1A_t16 trmE trnS FALSE 0.349 48.000 0.000 NA   NA
 6344676 6344677 C1A_t16 C1A_573 trnS   FALSE 0.100 171.000 0.000 NA   NA
 6344677 6344678 C1A_573 C1A_574     FALSE 0.016 389.000 0.000 NA   NA
 6344678 6344679 C1A_574 C1A_575     FALSE 0.268 66.000 0.000 NA   NA
 6344679 6344680 C1A_575 C1A_576     FALSE 0.128 152.000 0.000 NA   NA
 6344680 6344681 C1A_576 C1A_577     TRUE 0.879 -10.000 0.000 NA   NA
 6344681 6344682 C1A_577 C1A_578     FALSE 0.188 122.000 0.000 NA   NA
 6344682 6344683 C1A_578 C1A_579   iscS FALSE 0.094 172.000 0.000 NA   NA
 6344684 6344685 C1A_580 C1A_581 rodA   FALSE 0.269 46.000 0.005 1.000 N NA
 6344686 6344687 C1A_582 C1A_583     TRUE 0.994 3.000 0.199 NA   NA
 6344688 6344689 C1A_584 C1A_585 fabH plsX TRUE 0.996 11.000 0.380 0.009 Y NA
 6344689 6344690 C1A_585 C1A_586 plsX rpmF TRUE 0.993 9.000 0.418 1.000   NA
 6344691 6344692 C1A_587 C1A_588     TRUE 0.990 17.000 0.178 NA Y NA
 6344692 6344693 C1A_588 C1A_589     FALSE 0.051 172.000 0.000 1.000   NA
 6344694 6344695 C1A_590 C1A_591   ffh FALSE 0.006 510.000 0.000 1.000   NA
 6344695 6344696 C1A_591 C1A_592 ffh   TRUE 0.896 -15.000 0.008 1.000 N NA
 6344696 6344697 C1A_592 C1A_593     FALSE 0.009 304.000 0.000 1.000 N NA
 6344697 6344698 C1A_593 C1A_594   fabZ FALSE 0.209 121.000 0.006 1.000 N NA
 6344698 6344699 C1A_594 C1A_595 fabZ   TRUE 0.987 5.000 0.102 1.000 N NA
 6344699 6344700 C1A_595 C1A_596     TRUE 0.996 1.000 0.089 1.000 Y NA
 6344700 6344701 C1A_596 C1A_597     TRUE 0.989 8.000 0.016 1.000 Y NA
 6344701 6344702 C1A_597 C1A_598     FALSE 0.021 344.000 0.000 NA   NA
 6344702 6344703 C1A_598 C1A_599     TRUE 0.462 44.000 0.005 NA   NA
 6344703 6344704 C1A_599 C1A_600   rpsA TRUE 0.781 20.000 0.005 NA N NA
 6344706 6344707 C1A_602 C1A_603     FALSE 0.185 123.000 0.000 NA   NA
 6344708 6344709 C1A_604 C1A_605     TRUE 0.475 35.000 0.000 NA   NA
 6344710 6344711 C1A_606 C1A_607     FALSE 0.015 282.000 0.000 0.083   NA
 6344711 6344712 C1A_607 C1A_608     FALSE 0.006 543.000 0.000 1.000   NA
 6344712 6344713 C1A_608 C1A_609     FALSE 0.158 135.000 0.000 NA   NA
 6344713 6344714 C1A_609 C1A_610     TRUE 0.929 5.000 0.000 NA   NA
 6344714 6344715 C1A_610 C1A_611   htrA FALSE 0.009 372.000 0.000 1.000   NA
 6344715 6344716 C1A_611 C1A_612 htrA hflC TRUE 0.995 4.000 0.084 0.017 Y NA
 6344716 6344717 C1A_612 C1A_613 hflC hflK TRUE 0.999 3.000 0.947 0.017 Y NA
 6344717 6344718 C1A_613 C1A_614 hflK mutL FALSE 0.005 415.000 0.000 1.000 N NA
 6344718 6344719 C1A_614 C1A_615 mutL purE TRUE 0.755 0.000 0.003 1.000 N NA
 6344720 6344721 C1A_616 C1A_617   rpoZ TRUE 0.413 61.000 0.008 1.000   NA
 6344723 6344724 C1A_619 C1A_620     TRUE 0.639 150.000 0.184 NA   NA
 6344724 6344725 C1A_620 C1A_621     TRUE 0.994 -7.000 0.333 NA   NA
 6344725 6344726 C1A_621 C1A_622     TRUE 0.886 33.000 0.074 NA   NA
 6344726 6344727 C1A_622 C1A_623   rpoD FALSE 0.162 140.000 0.006 1.000 N NA
 6344727 6344728 C1A_623 C1A_624 rpoD   FALSE 0.011 617.000 0.000 NA   NA
 6344728 6344729 C1A_624 C1A_625     TRUE 0.765 18.000 0.000 NA   NA
 6344729 6344730 C1A_625 C1A_626     TRUE 0.616 25.000 0.000 NA   NA
 6344732 6344733 C1A_r4 C1A_628 rrsA sdhC FALSE 0.021 342.000 0.000 NA   NA
 6344733 6344734 C1A_628 C1A_629 sdhC sdhD TRUE 0.414 57.000 0.008 0.004   NA
 6344734 6344735 C1A_629 C1A_630 sdhD   TRUE 0.433 77.000 0.008 NA   NA
 6344735 6344736 C1A_630 C1A_631     FALSE 0.139 296.000 0.032 NA   NA
 6344736 6344737 C1A_631 C1A_632   lolC TRUE 0.543 117.000 0.007 1.000 Y NA
 6344737 6344738 C1A_632 C1A_633 lolC   TRUE 0.981 -7.000 0.030 NA   NA
 6344738 6344739 C1A_633 C1A_634     FALSE 0.049 228.000 0.000 NA   NA
 6344739 6344740 C1A_634 C1A_635     FALSE 0.224 93.000 0.000 NA   NA
 6344740 6344741 C1A_635 C1A_636   atpG FALSE 0.108 167.000 0.000 NA   NA
 6344741 6344742 C1A_636 C1A_637 atpG pmbA TRUE 0.702 19.000 0.003 NA   NA
 6344742 6344743 C1A_637 C1A_638 pmbA   FALSE 0.196 175.000 0.008 NA   NA
 6344743 6344744 C1A_638 C1A_639     TRUE 0.963 53.000 0.600 1.000 Y NA
 6344744 6344745 C1A_639 C1A_640   clpA FALSE 0.010 298.000 0.000 1.000 N NA
 6344745 6344746 C1A_640 C1A_641 clpA   FALSE 0.186 57.000 0.000 1.000   NA
 6344746 6344747 C1A_641 C1A_642   fba FALSE 0.182 59.000 0.000 1.000   NA
 6344747 6344748 C1A_642 C1A_t17 fba trnC TRUE 0.924 6.000 0.000 NA   NA
 6344748 6344749 C1A_t17 C1A_643 trnC   FALSE 0.205 108.000 0.000 NA   NA
 6344749 6344750 C1A_643 C1A_644   pyrD FALSE 0.252 73.000 0.000 NA   NA
 6344750 6344751 C1A_644 C1A_645 pyrD rnc FALSE 0.079 84.000 0.003 1.000 N NA
 6344752 6344753 C1A_646 C1A_647   dnaQ TRUE 0.561 36.000 0.007 1.000   NA
 6344753 6344754 C1A_647 C1A_648 dnaQ   TRUE 0.968 0.000 0.010 1.000   NA
 6344755 6344756 C1A_649 C1A_650 secB acnA TRUE 0.922 7.000 0.006 1.000 N NA
 6344756 6344757 C1A_650 C1A_651 acnA putA TRUE 0.523 122.000 0.006 1.000 Y NA
 6344757 6344758 C1A_651 C1A_652 putA   FALSE 0.081 110.000 0.000 1.000 N NA
 6344758 6344759 C1A_652 C1A_653   pepA FALSE 0.363 136.000 0.019 1.000 N NA
 6344759 6344760 C1A_653 C1A_654 pepA   FALSE 0.037 258.000 0.000 NA   NA
 6344760 6344761 C1A_654 C1A_655   nuoG TRUE 0.986 6.000 0.033 NA   NA
 6344761 6344762 C1A_655 C1A_656 nuoG nuoH TRUE 0.420 416.000 0.515 0.023 Y NA
 6344762 6344763 C1A_656 C1A_657 nuoH hemB TRUE 0.858 -7.000 0.005 1.000 N NA
 6344763 6344764 C1A_657 C1A_658 hemB   FALSE 0.009 379.000 0.000 1.000   NA
 6344765 6344766 C1A_659 C1A_660   polA FALSE 0.005 769.000 0.000 1.000   NA
 6344766 6344767 C1A_660 C1A_661 polA gatA FALSE 0.081 112.000 0.000 1.000 N NA
 6344767 6344768 C1A_661 C1A_662 gatA gyrB FALSE 0.029 187.000 0.000 1.000 N NA
 6344768 6344769 C1A_662 C1A_663 gyrB   FALSE 0.051 222.000 0.000 NA   NA
 6344769 6344770 C1A_663 C1A_664     FALSE 0.256 71.000 0.000 NA   NA
 6344771 6344772 C1A_665 C1A_666 psd   TRUE 0.998 -3.000 0.466 0.005 Y NA
 6344772 6344773 C1A_666 C1A_667     TRUE 0.757 23.000 0.009 0.055 N NA
 6344773 6344774 C1A_667 C1A_668     TRUE 0.998 3.000 0.400 0.003 Y NA
 6344774 6344775 C1A_668 C1A_669     TRUE 0.865 13.000 0.006 1.000   NA
 6344776 6344777 C1A_670 C1A_671     FALSE 0.011 548.000 0.000 NA   NA
 6344777 6344778 C1A_671 C1A_672     TRUE 0.657 56.000 0.016 NA   NA
 6344778 6344779 C1A_672 C1A_t21   trnV TRUE 0.616 25.000 0.000 NA   NA
 6344780 6344781 C1A_673 C1A_674     TRUE 0.962 33.000 0.500 NA   NA
 6344781 6344782 C1A_674 C1A_675     FALSE 0.026 299.000 0.000 NA   NA
 6344785 6344786 C1A_678 C1A_679 uvrC glyS FALSE 0.101 44.000 0.003 1.000 N NA
 6344786 6344787 C1A_679 C1A_680 glyS glyQ TRUE 0.999 4.000 0.651 0.002 Y NA
 6344787 6344788 C1A_680 C1A_681 glyQ   TRUE 0.439 45.000 0.005 NA   NA
 6344790 6344791 C1A_683 C1A_684 xth   TRUE 0.978 0.000 0.019 1.000 N NA
 6344791 6344792 C1A_684 C1A_685     FALSE 0.024 236.000 0.000 1.000   NA
 6344792 6344793 C1A_685 C1A_686     FALSE 0.071 194.000 0.000 NA   NA
 6344795 6344796 C1A_688 C1A_689   ribE FALSE 0.169 58.000 0.003 1.000   NA
 6344796 6344797 C1A_689 C1A_690 ribE   TRUE 0.395 41.000 0.000 NA   NA
 6344798 6344799 C1A_691 C1A_692 pheS   FALSE 0.018 103.000 0.003 1.000 N NA
 6344799 6344800 C1A_692 C1A_693     FALSE 0.172 61.000 0.000 1.000   NA
 6344800 6344801 C1A_693 C1A_694     FALSE 0.022 236.000 0.000 0.011   NA
 6344801 6344802 C1A_694 C1A_695     FALSE 0.023 235.000 0.000 0.011   NA
 6344802 6344803 C1A_695 C1A_696   rplU FALSE 0.028 219.000 0.000 1.000   NA
 6344803 6344804 C1A_696 C1A_697 rplU rpmA TRUE 0.998 11.000 0.667 0.039 Y NA
 6344804 6344805 C1A_697 C1A_t18 rpmA trnI TRUE 0.898 9.000 0.000 NA   NA
 6344805 6344806 C1A_t18 C1A_698 trnI metK TRUE 0.409 40.000 0.000 NA   NA
 6344806 6344807 C1A_698 C1A_699 metK   TRUE 0.392 110.000 0.014 1.000 N NA
 6344807 6344808 C1A_699 C1A_700     TRUE 0.877 40.000 0.026 0.002 Y NA
 6344808 6344809 C1A_700 C1A_701   coxC TRUE 0.416 48.000 0.007 1.000 N NA
 6344809 6344810 C1A_701 C1A_702 coxC ruvC TRUE 0.696 31.000 0.011 1.000 N NA
 6344813 6344814 C1A_705 C1A_706     FALSE 0.108 167.000 0.000 NA   NA
 6344814 6344815 C1A_706 C1A_707   nrdA FALSE 0.225 115.000 0.007 1.000 N NA
 6344815 6344816 C1A_707 C1A_708 nrdA   TRUE 0.737 49.000 0.053 1.000   NA
 6344817 6344818 C1A_r2 C1A_r1 rrlA rrfA FALSE 0.258 70.000 0.000 NA   NA
 6344819 6344820 C1A_709 C1A_710     FALSE 0.287 61.000 0.000 NA   NA
 6344821 6344822 C1A_711 C1A_712   atpD FALSE 0.044 97.000 0.003 0.055 N NA
 6344822 6344823 C1A_712 C1A_713 atpD atpC FALSE 0.219 78.000 0.005 0.010   NA
 6344826 6344827 C1A_716 C1A_717     FALSE 0.167 133.000 0.000 NA   NA
 6344828 6344829 C1A_718 C1A_t19 carA trnY FALSE 0.202 110.000 0.000 NA   NA
 6344829 6344830 C1A_t19 C1A_t20 trnY trnG TRUE 0.929 5.000 0.000 NA   NA
 6344830 6344831 C1A_t20 C1A_719 trnG tuf FALSE 0.239 79.000 0.000 NA   NA
 6344832 6344833 C1A_720 C1A_721 rplC rplD TRUE 0.935 3.000 0.000 NA   NA
 6344833 6344834 C1A_721 C1A_722 rplD rplW TRUE 0.998 -3.000 0.513 1.000 Y NA
 6344834 6344835 C1A_722 C1A_723 rplW rplB TRUE 0.999 2.000 0.849 1.000 Y NA
 6344835 6344836 C1A_723 C1A_724 rplB rpsS TRUE 0.884 139.000 0.820 0.050   NA
 6344836 6344837 C1A_724 C1A_725 rpsS rplV TRUE 0.981 10.000 0.119 0.050   NA
 6344837 6344838 C1A_725 C1A_726 rplV rpsC TRUE 0.916 40.000 0.109 0.050 Y NA
 6344838 6344839 C1A_726 C1A_727 rpsC rplP TRUE 0.638 257.000 0.828 0.050   NA
 6344839 6344840 C1A_727 C1A_728 rplP rpmC TRUE 0.996 12.000 0.802 0.038   NA
 6344840 6344841 C1A_728 C1A_729 rpmC rpsQ TRUE 0.999 -7.000 0.828 0.038 Y NA
 6344841 6344842 C1A_729 C1A_730 rpsQ rplN TRUE 0.996 19.000 0.791 0.050 Y NA
 6344842 6344843 C1A_730 C1A_731 rplN rplX TRUE 0.999 0.000 0.810 0.050 Y NA
 6344843 6344844 C1A_731 C1A_732 rplX rplE TRUE 0.999 7.000 0.758 0.038 Y NA
 6344844 6344845 C1A_732 C1A_733 rplE rspN TRUE 0.993 13.000 0.309 0.038 Y NA
 6344845 6344846 C1A_733 C1A_734 rspN rpsH TRUE 0.981 23.000 0.295 0.038 Y NA
 6344846 6344847 C1A_734 C1A_735 rpsH rplF TRUE 0.997 17.000 0.808 0.038 Y NA
 6344847 6344848 C1A_735 C1A_736 rplF rpl18 TRUE 0.999 6.000 0.815 0.038 Y NA
 6344848 6344849 C1A_736 C1A_737 rpl18 rpsE TRUE 0.998 13.000 0.814 0.050 Y NA
 6344849 6344850 C1A_737 C1A_738 rpsE rplO TRUE 0.996 4.000 0.148 0.050 Y NA
 6344850 6344851 C1A_738 C1A_739 rplO secY TRUE 0.998 4.000 0.730 1.000 N NA
 6344851 6344852 C1A_739 C1A_740 secY adk TRUE 0.992 -3.000 0.241 1.000 N NA
 6344852 6344853 C1A_740 C1A_741 adk rpsM TRUE 0.547 60.000 0.017 1.000 N NA
 6344853 6344854 C1A_741 C1A_742 rpsM rpsK TRUE 0.993 25.000 0.810 0.038 Y NA
 6344854 6344855 C1A_742 C1A_743 rpsK rpoA TRUE 0.964 21.000 0.308 1.000 N NA
 6344855 6344856 C1A_743 C1A_744 rpoA rplQ TRUE 0.943 65.000 0.873 1.000 N NA
 6344856 6344857 C1A_744 C1A_745 rplQ   FALSE 0.028 120.000 0.003 1.000 N NA
 6344857 6344858 C1A_745 C1A_746   atpH FALSE 0.147 39.000 0.003 1.000 N NA
 6344858 6344859 C1A_746 C1A_747 atpH atpA TRUE 0.999 -3.000 0.864 0.010 Y NA
 6344859 6344860 C1A_747 C1A_748 atpA greA TRUE 0.929 10.000 0.009 1.000 N NA
 6344860 6344861 C1A_748 C1A_749 greA ribB TRUE 0.973 4.000 0.014 1.000 N NA
 6344861 6344862 C1A_749 C1A_750 ribB   TRUE 0.586 72.000 0.030 1.000   NA
 6344863 6344864 C1A_751 C1A_752   fabG FALSE 0.222 96.000 0.000 NA   NA
 6344865 6344866 C1A_753 C1A_754   ppdK FALSE 0.268 66.000 0.000 NA   NA
 6344866 6344867 C1A_754 C1A_755 ppdK   FALSE 0.074 189.000 0.000 NA   NA
 6344867 6344868 C1A_755 C1A_756     TRUE 0.908 8.000 0.000 NA   NA
 6344868 6344869 C1A_756 C1A_757     FALSE 0.037 258.000 0.000 NA   NA
 6344869 6344870 C1A_757 C1A_758     FALSE 0.188 122.000 0.000 NA   NA
 6344871 6344872 C1A_759 C1A_760     TRUE 0.978 17.000 0.216 NA N NA
 6344877 6344878 C1A_765 C1A_766 pgsA   FALSE 0.224 100.000 0.003 NA   NA
 6344878 6344879 C1A_766 C1A_767     FALSE 0.280 68.000 0.004 NA   NA
 6344879 6344880 C1A_767 C1A_768     TRUE 0.945 8.000 0.005 NA   NA
 6344880 6344881 C1A_768 C1A_769     FALSE 0.352 159.000 0.016 NA   NA
 6344881 6344882 C1A_769 C1A_770     TRUE 0.920 -16.000 0.012 1.000 N NA
 6344882 6344883 C1A_770 C1A_771     FALSE 0.005 458.000 0.000 1.000 N NA
 6344884 6344885 C1A_772 C1A_773     FALSE 0.239 79.000 0.000 NA   NA
 6344886 6344887 C1A_774 C1A_775 ubiE   FALSE 0.043 160.000 0.000 1.000 N NA
 6344887 6344888 C1A_775 C1A_776     FALSE 0.020 345.000 0.000 NA   NA
 6344890 6344891 C1A_778 C1A_779   argS FALSE 0.080 135.000 0.002 NA   NA
 6344892 6344893 C1A_780 C1A_781     TRUE 0.977 4.000 0.011 NA   NA
 6344894 6344895 C1A_782 C1A_783     FALSE 0.009 522.000 0.000 NA N NA
 6344896 6344897 C1A_784 C1A_785     TRUE 0.765 18.000 0.000 NA   NA
 6344897 6344898 C1A_785 C1A_786   pyrG TRUE 0.429 39.000 0.000 NA   NA
 6344898 6344899 C1A_786 C1A_787 pyrG   TRUE 0.987 0.000 0.083 1.000 N NA
 6344901 6344902 C1A_789 C1A_790     FALSE 0.049 228.000 0.000 NA   NA
 6344902 6344903 C1A_790 C1A_791   glmS FALSE 0.011 626.000 0.000 NA   NA
 6344903 6344904 C1A_791 C1A_792 glmS   TRUE 0.929 9.000 0.006 NA N NA
 6344904 6344905 C1A_792 C1A_t34   trnD FALSE 0.171 131.000 0.000 NA   NA
 6344906 6344907 C1A_793 C1A_794 rpsB tsf TRUE 0.999 -3.000 0.748 1.000 Y NA
 6344907 6344908 C1A_794 C1A_795 tsf pyrH TRUE 0.867 59.000 0.416 1.000 N NA
 6344908 6344909 C1A_795 C1A_796 pyrH frr TRUE 0.996 8.000 0.626 1.000 N NA
 6344909 6344910 C1A_796 C1A_797 frr   FALSE 0.013 392.000 0.000 NA N NA
 6344911 6344912 C1A_798 C1A_799     FALSE 0.114 161.000 0.000 NA   NA
 6344913 6344914 C1A_800 C1A_801     FALSE 0.107 72.000 0.000 1.000 N NA
 6344915 6344916 C1A_802 C1A_803     FALSE 0.177 127.000 0.000 NA   NA
 6344917 6344918 C1A_t28 C1A_804 trnL ribA TRUE 0.702 21.000 0.000 NA   NA
 6344918 6344919 C1A_804 C1A_805 ribA   FALSE 0.212 73.000 0.000 NA N NA
 6344919 6344920 C1A_805 C1A_806     TRUE 0.998 -7.000 0.579 NA Y NA
 6344920 6344921 C1A_806 C1A_807     TRUE 0.996 17.000 0.526 NA Y NA
 6344921 6344922 C1A_807 C1A_808     TRUE 0.998 2.000 0.452 1.000 Y NA
 6344922 6344923 C1A_808 C1A_809     TRUE 0.977 31.000 0.405 1.000 Y NA
 6344927 6344928 C1A_813 C1A_814   radA FALSE 0.157 67.000 0.000 1.000   NA
 6344929 6344930 C1A_815 C1A_816   ftsY FALSE 0.011 630.000 0.000 NA   NA
 6344931 6344932 C1A_817 C1A_818     TRUE 0.988 6.000 0.056 NA   NA
 6344932 6344933 C1A_818 C1A_819   hscB TRUE 0.984 -7.000 0.046 NA   NA
 6344933 6344934 C1A_819 C1A_820 hscB hscA TRUE 0.997 -22.000 0.634 NA Y NA
 6344937 6344938 C1A_823 C1A_824     FALSE 0.287 61.000 0.000 NA   NA
 6344939 6344940 C1A_825 C1A_826 uvrA comF FALSE 0.206 52.000 0.000 1.000   NA
 6344942 6344943 C1A_828 C1A_829     FALSE 0.026 306.000 0.000 NA   NA
 6344943 6344944 C1A_829 C1A_830     FALSE 0.015 405.000 0.000 NA   NA
 6344944 6344945 C1A_830 C1A_831     TRUE 0.764 -49.000 0.000 NA   NA
 6344945 6344946 C1A_831 C1A_832     FALSE 0.244 77.000 0.000 NA   NA
 6344946 6344947 C1A_832 C1A_833     FALSE 0.135 147.000 0.000 NA   NA
 6344949 6344950 C1A_835 C1A_836     FALSE 0.208 106.000 0.000 NA   NA
 6344950 6344951 C1A_836 C1A_837     FALSE 0.190 121.000 0.000 NA   NA
 6344952 6344953 C1A_838 C1A_839   lipA FALSE 0.015 295.000 0.000 1.000   NA
 6344953 6344954 C1A_839 C1A_840 lipA rpmB TRUE 0.874 -7.000 0.005 1.000 N NA
 6344954 6344955 C1A_840 C1A_841 rpmB   FALSE 0.277 55.000 0.003 NA   NA
 6344955 6344956 C1A_841 C1A_842     TRUE 0.885 10.000 0.000 NA   NA
 6344956 6344957 C1A_842 C1A_843     FALSE 0.015 413.000 0.000 NA   NA
 6344957 6344958 C1A_843 C1A_t33   trnL TRUE 0.702 21.000 0.000 NA   NA
 6344958 6344959 C1A_t33 C1A_844 trnL rpsD TRUE 0.868 11.000 0.000 NA   NA
 6344962 6344963 C1A_847 C1A_848 prsA gatC TRUE 0.927 -10.000 0.009 1.000 N NA
 6344964 6344965 C1A_849 C1A_850 tolB   FALSE 0.041 420.000 0.015 1.000   NA
 6344965 6344966 C1A_850 C1A_851   dnaJ FALSE 0.108 121.000 0.000 1.000   NA
 6344966 6344967 C1A_851 C1A_t32 dnaJ trnR FALSE 0.233 83.000 0.000 NA   NA
 6344967 6344968 C1A_t32 C1A_852 trnR   FALSE 0.036 263.000 0.000 NA   NA
 6344968 6344969 C1A_852 C1A_853     TRUE 0.532 78.000 0.013 NA   NA
 6344970 6344971 C1A_854 C1A_855     FALSE 0.056 215.000 0.000 NA   NA
 6344971 6344972 C1A_855 C1A_856     FALSE 0.287 61.000 0.000 NA   NA
 6344972 6344973 C1A_856 C1A_857   fumC FALSE 0.072 193.000 0.000 NA   NA
 6344973 6344974 C1A_857 C1A_858 fumC   FALSE 0.010 352.000 0.000 1.000   NA
 6344976 6344977 C1A_860 C1A_861     TRUE 0.997 0.000 0.500 NA   NA
 6344977 6344978 C1A_861 C1A_862   bfr TRUE 0.721 54.000 0.031 NA   NA
 6344978 6344979 C1A_862 C1A_863 bfr   TRUE 0.988 2.000 0.031 NA   NA
 6344979 6344980 C1A_863 C1A_864     TRUE 0.885 10.000 0.000 NA   NA
 6344980 6344981 C1A_864 C1A_865   eno FALSE 0.003 321.000 0.002 1.000   NA
 6344981 6344982 C1A_865 C1A_866 eno   TRUE 0.927 -12.000 0.009 1.000   NA
 6344982 6344983 C1A_866 C1A_867     FALSE 0.009 803.000 0.000 NA   NA
 6344983 6344984 C1A_867 C1A_868     FALSE 0.007 1978.000 0.000 NA   NA
 6344984 6344985 C1A_868 C1A_869     TRUE 0.509 182.000 0.182 NA   NA
 6344985 6344986 C1A_869 C1A_870     TRUE 0.735 129.000 0.222 NA   NA
 6344986 6344987 C1A_870 C1A_871   ispG TRUE 0.916 17.000 0.009 NA   NA
 6344987 6344988 C1A_871 C1A_872 ispG   FALSE 0.021 251.000 0.000 1.000   NA
 6344989 6344990 C1A_873 C1A_874     FALSE 0.006 357.000 0.000 1.000 N NA
 6344994 6344995 C1A_878 C1A_879     FALSE 0.322 0.000 0.002 1.000 N NA
 6344995 6344996 C1A_879 C1A_880     FALSE 0.083 108.000 0.000 1.000 N NA
 6344997 6344998 C1A_881 C1A_882 dnaG   FALSE 0.183 99.000 0.000 NA N NA
 6345000 6345001 C1A_884 C1A_885   fdx FALSE 0.044 238.000 0.000 NA   NA
 6345001 6345002 C1A_885 C1A_886 fdx   TRUE 0.981 8.000 0.029 NA   NA
 6345002 6345003 C1A_886 C1A_887     TRUE 0.754 74.000 0.125 NA   NA
 6345005 6345006 C1A_889 C1A_890 ispE   TRUE 0.943 4.000 0.004 NA   NA
 6345006 6345007 C1A_890 C1A_891     TRUE 0.983 -6.000 0.032 NA   NA
 6345007 6345008 C1A_891 C1A_892     TRUE 0.434 115.000 0.011 NA   NA
 6345008 6345009 C1A_892 C1A_893     TRUE 0.857 6.000 0.002 NA   NA
 6345009 6345010 C1A_893 C1A_894     FALSE 0.033 581.000 0.000 1.000 Y NA
 6345012 6345013 C1A_896 C1A_897     FALSE 0.008 334.000 0.000 1.000 N NA
 6345014 6345015 C1A_898 C1A_899     FALSE 0.094 172.000 0.000 NA   NA
 6345015 6345016 C1A_899 C1A_900     FALSE 0.088 176.000 0.000 NA   NA
 6345016 6345017 C1A_900 C1A_901     FALSE 0.013 437.000 0.000 NA   NA
 6345017 6345018 C1A_901 C1A_902     FALSE 0.059 210.000 0.000 NA   NA
 6345019 6345020 C1A_903 C1A_904 gap   TRUE 0.979 4.000 0.014 NA N NA
 6345020 6345021 C1A_904 C1A_905     FALSE 0.122 156.000 0.000 NA   NA
 6345021 6345022 C1A_905 C1A_906     FALSE 0.009 905.000 0.000 NA   NA
 6345022 6345023 C1A_906 C1A_907     FALSE 0.120 158.000 0.000 NA   NA
 6345023 6345024 C1A_907 C1A_908   trxB TRUE 0.993 2.000 0.024 1.000 Y NA
 6345024 6345025 C1A_908 C1A_909 trxB   FALSE 0.225 92.000 0.000 NA   NA
 6345026 6345027 C1A_910 C1A_911     FALSE 0.008 417.000 0.000 1.000   NA
 6345027 6345028 C1A_911 C1A_912     TRUE 0.633 54.000 0.022 1.000   NA
 6345030 6345031 C1A_914 C1A_915     FALSE 0.029 295.000 0.000 NA   NA
 6345031 6345032 C1A_915 C1A_916   rpmG FALSE 0.026 299.000 0.000 NA   NA
 6345033 6345034 C1A_917 C1A_918   dnaK FALSE 0.312 74.000 0.008 1.000 N NA
 6345034 6345035 C1A_918 C1A_919 dnaK   FALSE 0.201 52.000 0.003 NA N NA
 6345035 6345036 C1A_919 C1A_920   metC TRUE 0.590 68.000 0.018 NA N NA
 6345036 6345037 C1A_920 C1A_921 metC murE TRUE 0.841 -31.000 0.008 0.049 N NA
 6345038 6345039 C1A_922 C1A_923   miaA FALSE 0.010 349.000 0.000 1.000   NA
 6345040 6345041 C1A_924 C1A_925     FALSE 0.253 139.000 0.006 NA   NA
 6345041 6345042 C1A_925 C1A_926     TRUE 0.908 18.000 0.010 NA   NA
 6345042 6345043 C1A_926 C1A_927     TRUE 0.419 100.000 0.008 NA   NA
 6345043 6345044 C1A_927 C1A_928     TRUE 0.906 30.000 0.105 NA   NA
 6345045 6345046 C1A_929 C1A_930   dnaB FALSE 0.007 348.000 0.000 1.000 N NA
 6345047 6345048 C1A_t29 C1A_931 trnL   TRUE 0.653 23.000 0.000 NA   NA
 6345048 6345049 C1A_931 C1A_932     FALSE 0.225 92.000 0.000 NA   NA
 6345049 6345050 C1A_932 C1A_933     FALSE 0.011 282.000 0.000 1.000 N NA
 6345050 6345051 C1A_933 C1A_934     FALSE 0.058 211.000 0.000 NA   NA
 6345051 6345052 C1A_934 C1A_935   pyrC FALSE 0.210 105.000 0.000 NA   NA
 6345052 6345053 C1A_935 C1A_936 pyrC   FALSE 0.066 133.000 0.000 1.000 N NA
 6345055 6345056 C1A_938 C1A_939     FALSE 0.235 82.000 0.000 NA   NA
 6345056 6345057 C1A_939 C1A_940   metG FALSE 0.044 238.000 0.000 NA   NA
 6345061 6345062 C1A_944 C1A_945   dxr TRUE 0.568 28.000 0.004 NA   NA
 6345063 6345064 C1A_946 C1A_947     FALSE 0.344 49.000 0.000 NA   NA
 6345064 6345065 C1A_947 C1A_948     FALSE 0.268 66.000 0.000 NA   NA
 6345065 6345066 C1A_948 C1A_949   pstB FALSE 0.261 69.000 0.000 NA   NA
 6345066 6345067 C1A_949 C1A_950 pstB dapB FALSE 0.184 156.000 0.009 1.000 N NA
 6345067 6345068 C1A_950 C1A_951 dapB   FALSE 0.016 289.000 0.000 1.000   NA
 6345068 6345069 C1A_951 C1A_952     FALSE 0.244 77.000 0.000 NA   NA
 6345069 6345070 C1A_952 C1A_953     FALSE 0.025 313.000 0.000 NA   NA
 6345070 6345071 C1A_953 C1A_954     FALSE 0.177 127.000 0.000 NA   NA
 6345071 6345072 C1A_954 C1A_955     FALSE 0.163 134.000 0.000 NA   NA
 6345072 6345073 C1A_955 C1A_956     FALSE 0.248 75.000 0.000 NA   NA
 6345073 6345074 C1A_956 C1A_957   pyrF FALSE 0.009 752.000 0.000 NA   NA
 6345074 6345075 C1A_957 C1A_958 pyrF   FALSE 0.175 128.000 0.000 NA   NA
 6345077 6345078 C1A_960 C1A_961   valS FALSE 0.388 42.000 0.000 NA   NA
 6345081 6345082 C1A_964 C1A_965   lpdA TRUE 0.975 -7.000 0.015 NA   NA
 6345082 6345083 C1A_965 C1A_966 lpdA   FALSE 0.299 87.000 0.008 1.000 N NA
 6345083 6345084 C1A_966 C1A_967     FALSE 0.004 1134.000 0.000 1.000   NA
 6345085 6345086 C1A_968 C1A_969   gatB TRUE 0.408 12.000 0.002 1.000   NA
 6345086 6345087 C1A_969 C1A_970 gatB pdhA FALSE 0.022 206.000 0.000 1.000 N NA
 6345088 6345089 C1A_971 C1A_972     FALSE 0.125 155.000 0.000 NA   NA
 6345089 6345090 C1A_972 C1A_973   coxB FALSE 0.003 557.000 0.000 0.050 N NA
 6345090 6345091 C1A_973 C1A_974 coxB coxA TRUE 0.997 16.000 0.741 0.003 Y NA
 6345091 6345092 C1A_974 C1A_975 coxA ctaB TRUE 0.991 2.000 0.153 0.050 N NA
 6345092 6345093 C1A_975 C1A_976 ctaB rnhA FALSE 0.024 176.000 0.003 1.000 N NA
 6345093 6345094 C1A_976 C1A_977 rnhA   TRUE 0.973 -7.000 0.014 NA   NA
 6345095 6345096 C1A_978 C1A_979 cysS   FALSE 0.271 65.000 0.000 NA   NA
 6345096 6345097 C1A_979 C1A_980     FALSE 0.197 115.000 0.000 NA   NA
 6345097 6345098 C1A_980 C1A_981     FALSE 0.177 127.000 0.000 NA   NA
 6345098 6345099 C1A_981 C1A_982     TRUE 0.604 141.000 0.176 1.000   NA
 6345102 6345103 C1A_984 C1A_985 glpX   FALSE 0.322 141.000 0.009 NA   NA
 6345105 6345106 C1A_987 C1A_988     FALSE 0.020 347.000 0.000 NA   NA
 6345107 6345108 C1A_989 C1A_990     TRUE 0.934 0.000 0.000 NA   NA
 6345108 6345109 C1A_990 C1A_991     TRUE 0.571 27.000 0.000 NA   NA
 6345109 6345110 C1A_991 C1A_992     TRUE 0.904 -7.000 0.000 NA   NA
 6345111 6345112 C1A_993 C1A_994     FALSE 0.008 924.000 0.000 NA   NA
 6345114 6345115 C1A_996 C1A_997 dprA   FALSE 0.026 906.000 0.000 1.000 Y NA
 6345117 6345118 C1A_999 C1A_1000 mgtE   FALSE 0.006 504.000 0.000 1.000   NA
 6345118 6345119 C1A_1000 C1A_1001     TRUE 0.509 33.000 0.000 NA   NA
 6345119 6345120 C1A_1001 C1A_1002     FALSE 0.014 426.000 0.000 NA   NA
 6345121 6345122 C1A_1003 C1A_1004 ubiA   TRUE 0.769 4.000 0.003 1.000 N NA
 6345122 6345123 C1A_1004 C1A_1005   infB TRUE 0.997 10.000 0.530 1.000 Y NA
 6345123 6345124 C1A_1005 C1A_1006 infB nusA TRUE 0.992 8.000 0.342 1.000 N NA
 6345124 6345125 C1A_1006 C1A_1007 nusA   FALSE 0.243 88.000 0.005 NA N NA
 6345128 6345129 C1A_1010 C1A_1011 dnaA secF FALSE 0.045 158.000 0.000 1.000 N NA
 6345131 6345132 C1A_1013 C1A_1014   ribH TRUE 0.904 -22.000 0.011 1.000 N NA
 6345132 6345133 C1A_1014 C1A_1015 ribH nusB TRUE 0.995 0.000 0.347 1.000 N NA
 6345134 6345135 C1A_1016 C1A_1017   dut FALSE 0.163 69.000 0.002 NA   NA
 6345136 6345137 C1A_1018 C1A_1019     FALSE 0.214 103.000 0.000 NA   NA
 6345137 6345138 C1A_1019 C1A_1020     FALSE 0.041 250.000 0.000 NA   NA
 6345138 6345139 C1A_1020 C1A_1021     TRUE 0.990 -25.000 0.500 NA   NA
 6345139 6345140 C1A_1021 C1A_1022     TRUE 0.892 59.000 0.400 NA   NA
 6345141 6345142 C1A_1023 C1A_1024 acpS proS TRUE 0.960 -3.000 0.011 1.000 N NA
 6345142 6345143 C1A_1024 C1A_1025 proS   FALSE 0.207 107.000 0.000 NA   NA
 6345143 6345144 C1A_1025 C1A_1026     TRUE 0.832 -19.000 0.000 NA   NA
 6345147 6345148 C1A_1029 C1A_1030 nrdB   FALSE 0.009 868.000 0.000 NA   NA
 6345149 6345150 C1A_1031 C1A_1032     FALSE 0.276 63.000 0.000 NA   NA
 6345151 6345152 C1A_1033 C1A_1034 groES groEL TRUE 0.779 90.000 0.036 1.000 Y NA
 6345152 6345153 C1A_1034 C1A_1035 groEL   FALSE 0.008 1231.000 0.000 NA   NA
 6345155 6345156 C1A_1037 C1A_1038     FALSE 0.008 1463.000 0.000 NA   NA
 6345157 6345158 C1A_1039 C1A_1040   infA TRUE 0.972 -3.000 0.012 NA N NA
 6345158 6345159 C1A_1040 C1A_1041 infA   FALSE 0.254 72.000 0.000 NA   NA
 6345159 6345160 C1A_1041 C1A_1042   purA FALSE 0.117 159.000 0.000 NA   NA
 6345162 6345163 C1A_1044 C1A_1045 argB   TRUE 0.955 -25.000 0.046 1.000   NA
 6345164 6345165 C1A_1046 C1A_1047 prfA   FALSE 0.080 185.000 0.000 NA   NA
 6345166 6345167 C1A_1048 C1A_1049     FALSE 0.021 254.000 0.000 1.000   NA
 6345169 6345170 C1A_1051 C1A_1052     FALSE 0.022 250.000 0.000 1.000   NA
 6345171 6345172 C1A_1053 C1A_1054     FALSE 0.008 685.000 0.000 NA N NA
 6345175 6345176 C1A_1057 C1A_1058     FALSE 0.009 374.000 0.000 1.000   NA
 6345176 6345177 C1A_1058 C1A_t31   trnF FALSE 0.287 61.000 0.000 NA   NA
 6345178 6345179 C1A_1059 C1A_1060 coaD   TRUE 0.627 72.000 0.023 NA   NA
 6345180 6345181 C1A_1061 C1A_1062 cdsA uppS TRUE 0.996 -10.000 0.400 1.000 Y NA
 6345181 6345182 C1A_1062 C1A_1063 uppS   FALSE 0.033 277.000 0.000 NA   NA
 6345183 6345184 C1A_1064 C1A_1065 sucB   FALSE 0.261 69.000 0.000 NA   NA
 6345184 6345185 C1A_1065 C1A_1066     FALSE 0.009 821.000 0.000 NA   NA
 6345185 6345186 C1A_1066 C1A_1067   fabI FALSE 0.014 419.000 0.000 NA   NA
 6345187 6345188 C1A_1068 C1A_1069     TRUE 0.636 24.000 0.000 NA   NA
 6345190 6345191 C1A_1071 C1A_1072     FALSE 0.034 274.000 0.000 NA   NA
 6345191 6345192 C1A_1072 C1A_1073     TRUE 0.769 101.000 0.188 NA   NA
 6345192 6345193 C1A_1073 C1A_1074     FALSE 0.008 1405.000 0.000 NA   NA
 6345193 6345194 C1A_1074 C1A_1075     FALSE 0.186 57.000 0.000 1.000   NA
 6345195 6345196 C1A_1076 C1A_1077     FALSE 0.295 60.000 0.000 NA   NA
 6345196 6345197 C1A_1077 C1A_1078     FALSE 0.061 204.000 0.000 NA   NA
 6345197 6345198 C1A_1078 C1A_1079     FALSE 0.047 231.000 0.000 NA   NA
 6345200 6345201 C1A_1081 C1A_1082     TRUE 0.571 27.000 0.000 NA   NA
 6345201 6345202 C1A_1082 C1A_1083     FALSE 0.076 188.000 0.000 NA   NA
 6345202 6345203 C1A_1083 C1A_1084     FALSE 0.028 296.000 0.000 NA   NA
 6345203 6345204 C1A_1084 C1A_1085     FALSE 0.274 64.000 0.000 NA   NA
 6345207 6345208 C1A_1088 C1A_1089     FALSE 0.328 53.000 0.000 NA   NA
 6345208 6345209 C1A_1089 C1A_1090     TRUE 0.936 1.000 0.000 NA   NA
 6345209 6345210 C1A_1090 C1A_1091     TRUE 0.924 -3.000 0.000 NA   NA
 6345210 6345211 C1A_1091 C1A_1092     TRUE 0.934 0.000 0.000 NA   NA
 6345211 6345212 C1A_1092 C1A_1093     FALSE 0.196 116.000 0.000 NA   NA
 6345212 6345213 C1A_1093 C1A_1094     TRUE 0.451 37.000 0.000 NA   NA
 6345213 6345214 C1A_1094 C1A_1095     TRUE 0.976 16.000 0.133 NA   NA
 6345214 6345215 C1A_1095 C1A_1096     TRUE 0.904 -7.000 0.000 NA   NA
 6345215 6345216 C1A_1096 C1A_1097     TRUE 0.994 -25.000 0.667 NA   NA
 6345216 6345217 C1A_1097 C1A_1098     TRUE 0.998 -3.000 0.750 NA   NA
 6345217 6345218 C1A_1098 C1A_1099     TRUE 0.997 5.000 0.500 NA   NA
 6345218 6345219 C1A_1099 C1A_1100     TRUE 0.993 -28.000 0.667 NA   NA
 6345221 6345222 C1A_1102 C1A_1103     TRUE 0.995 7.000 0.333 NA   NA
 6345222 6345223 C1A_1103 C1A_1104     FALSE 0.029 293.000 0.000 NA   NA
 6345223 6345224 C1A_1104 C1A_1105     TRUE 0.492 34.000 0.000 NA   NA
 6345224 6345225 C1A_1105 C1A_1106     TRUE 0.924 -3.000 0.000 NA   NA
 6345225 6345226 C1A_1106 C1A_1107     TRUE 0.475 35.000 0.000 NA   NA
 6345226 6345227 C1A_1107 C1A_1108     TRUE 0.765 18.000 0.000 NA   NA
 6345227 6345228 C1A_1108 C1A_1109     FALSE 0.318 35.000 0.000 1.000   NA
 6345231 6345232 C1A_1112 C1A_1113     FALSE 0.039 114.000 0.002 1.000   NA
 6345232 6345233 C1A_1113 C1A_1114     FALSE 0.163 134.000 0.000 NA   NA
 6345233 6345234 C1A_1114 C1A_1115     FALSE 0.104 169.000 0.000 NA   NA
 6345234 6345235 C1A_1115 C1A_1116     TRUE 0.933 54.000 0.667 1.000   NA
 6345235 6345236 C1A_1116 C1A_1117     TRUE 0.888 75.000 0.500 NA   NA
 6345236 6345237 C1A_1117 C1A_1118     FALSE 0.014 425.000 0.000 NA   NA
 6345237 6345238 C1A_1118 C1A_1119     FALSE 0.328 53.000 0.000 NA   NA
 6345238 6345239 C1A_1119 C1A_1120     FALSE 0.227 91.000 0.000 NA   NA
 6345239 6345240 C1A_1120 C1A_1121     TRUE 0.936 2.000 0.000 NA   NA
 6345240 6345241 C1A_1121 C1A_1122     TRUE 0.924 -3.000 0.000 NA   NA
 6345241 6345242 C1A_1122 C1A_1123     TRUE 0.989 -13.000 0.250 NA   NA
 6345242 6345243 C1A_1123 C1A_1124     TRUE 0.995 0.000 0.250 NA   NA
 6345243 6345244 C1A_1124 C1A_1125     TRUE 0.935 3.000 0.000 NA   NA
 6345244 6345245 C1A_1125 C1A_1126     TRUE 0.994 3.000 0.167 NA   NA
 6345245 6345246 C1A_1126 C1A_1127     TRUE 0.993 0.000 0.167 NA   NA
 6345247 6345248 C1A_11 C1A_12     FALSE 0.121 117.000 0.002 NA   NA
 6345249 6345250 C1A_13 C1A_14     TRUE 0.860 -13.000 0.000 NA   NA
 6345250 6345251 C1A_14 C1A_15     FALSE 0.265 67.000 0.000 NA   NA
 6345253 6345254 C1A_17 C1A_18     FALSE 0.287 61.000 0.000 NA   NA
 6345254 6345255 C1A_18 C1A_19     TRUE 0.993 17.000 0.667 NA   NA
 6345255 6345256 C1A_19 C1A_20     TRUE 0.409 40.000 0.000 NA   NA
 6345256 6345257 C1A_20 C1A_21     TRUE 0.957 43.000 0.667 NA   NA
 6345257 6345258 C1A_21 C1A_22     FALSE 0.235 82.000 0.000 NA   NA
 6345258 6345259 C1A_22 C1A_23     FALSE 0.008 986.000 0.000 NA   NA
 6345260 6345261 C1A_24 C1A_25     TRUE 0.860 -13.000 0.000 NA   NA
 6345261 6345262 C1A_25 C1A_26     TRUE 0.800 218.000 1.000 NA   NA
 6345263 6345264 C1A_27 C1A_28     FALSE 0.016 380.000 0.000 NA   NA
 6345264 6345265 C1A_28 C1A_29     TRUE 0.995 7.000 0.333 NA   NA
 6345266 6345267 C1A_30 C1A_31     TRUE 0.930 55.000 0.667 0.066   NA
 6345268 6345269 C1A_32 C1A_33     TRUE 0.993 -28.000 0.667 NA   NA
 6345269 6345270 C1A_33 C1A_34     TRUE 0.997 5.000 0.500 NA   NA
 6345270 6345271 C1A_34 C1A_35     TRUE 0.998 -3.000 0.750 NA   NA
 6345271 6345272 C1A_35 C1A_36     TRUE 0.994 -25.000 0.667 NA   NA
 6345272 6345273 C1A_36 C1A_37     TRUE 0.904 -7.000 0.000 NA   NA
 6345273 6345274 C1A_37 C1A_38     TRUE 0.976 16.000 0.133 NA   NA
 6345274 6345275 C1A_38 C1A_39     TRUE 0.451 37.000 0.000 NA   NA
 6345275 6345276 C1A_39 C1A_40     FALSE 0.196 116.000 0.000 NA   NA
 6345276 6345277 C1A_40 C1A_41     TRUE 0.934 0.000 0.000 NA   NA
 6345277 6345278 C1A_41 C1A_42     TRUE 0.924 -3.000 0.000 NA   NA
 6345278 6345279 C1A_42 C1A_43     TRUE 0.936 1.000 0.000 NA   NA
 6345279 6345280 C1A_43 C1A_44     FALSE 0.307 57.000 0.000 NA   NA
 6345283 6345284 C1A_47 C1A_48     FALSE 0.015 400.000 0.000 NA   NA
 6345284 6345285 C1A_48 C1A_49     FALSE 0.274 64.000 0.000 NA   NA
 6345285 6345286 C1A_49 C1A_50     FALSE 0.028 296.000 0.000 NA   NA
 6345286 6345287 C1A_50 C1A_51     FALSE 0.076 188.000 0.000 NA   NA
 6345287 6345288 C1A_51 C1A_52     TRUE 0.571 27.000 0.000 NA   NA
 6345290 6345291 C1A_54 C1A_55     TRUE 0.782 -33.000 0.000 NA   NA
 6345292 6345293 C1A_56 C1A_57     FALSE 0.222 97.000 0.000 NA   NA
 6345296 6345297 C1A_60 C1A_61   pyrE FALSE 0.003 954.000 0.000 1.000 N NA
 6345297 6345298 C1A_61 C1A_62 pyrE   TRUE 0.964 -3.000 0.013 1.000 N NA
 6345300 6345301 C1A_64 C1A_65 murB hemC FALSE 0.348 51.000 0.006 1.000 N NA
 6345302 6345303 C1A_66 C1A_67   secD FALSE 0.034 271.000 0.000 NA   NA
 6345304 6345305 C1A_68 C1A_69     FALSE 0.287 60.000 0.006 1.000 N NA
 6345305 6345306 C1A_69 C1A_70   ligA FALSE 0.248 75.000 0.000 NA   NA
 6345306 6345307 C1A_70 C1A_71 ligA   TRUE 0.729 20.000 0.000 NA   NA
 6345310 6345311 C1A_74 C1A_75 recG   FALSE 0.022 330.000 0.000 NA   NA
 6345312 6345313 C1A_76 C1A_77     TRUE 0.539 62.000 0.010 NA   NA
 6345314 6345315 C1A_78 C1A_79 ccmC   FALSE 0.022 250.000 0.000 1.000   NA
 6345315 6345316 C1A_79 C1A_80     FALSE 0.013 461.000 0.000 NA   NA
 6345316 6345317 C1A_80 C1A_81     FALSE 0.010 685.000 0.000 NA   NA
 6345317 6345318 C1A_81 C1A_82   guaA FALSE 0.026 228.000 0.000 1.000   NA
 6345320 6345321 C1A_84 C1A_85     FALSE 0.133 86.000 0.000 1.000   NA
 6345321 6345322 C1A_85 C1A_86   lepA FALSE 0.136 82.000 0.000 1.000   NA
 6345323 6345324 C1A_87 C1A_88     FALSE 0.301 59.000 0.000 NA   NA
 6345325 6345326 C1A_89 C1A_90 ribF lspA TRUE 0.966 -3.000 0.013 1.000 N NA
 6345326 6345327 C1A_90 C1A_91 lspA   FALSE 0.077 368.000 0.038 0.027   NA
 6345327 6345328 C1A_91 C1A_92     TRUE 0.993 -13.000 0.598 0.007   NA
 6345332 6345333 C1A_96 C1A_97   smpB FALSE 0.124 89.000 0.002 NA   NA
 6345333 6345334 C1A_97 C1A_98 smpB lgt TRUE 0.707 7.000 0.003 1.000 N NA
 6345335 6345336 C1A_99 C1A_100     TRUE 0.916 85.000 0.667 NA   NA
 6345336 6345337 C1A_100 C1A_101     TRUE 0.544 41.000 0.006 NA   NA
 6345337 6345338 C1A_101 C1A_102     FALSE 0.349 48.000 0.000 NA   NA
 6345339 6345340 C1A_103 C1A_104     FALSE 0.019 351.000 0.000 NA   NA
 6345343 6345344 C1A_107 C1A_108   sucA FALSE 0.070 195.000 0.000 NA   NA
 6345346 6345347 C1A_110 C1A_111 trpS grpE TRUE 0.923 16.000 0.016 1.000 N NA
 6345347 6345348 C1A_111 C1A_112 grpE ispB FALSE 0.243 62.000 0.005 1.000 N NA
 6345348 6345349 C1A_112 C1A_113 ispB rpsP TRUE 0.493 11.000 0.003 1.000 N NA
 6345349 6345350 C1A_113 C1A_114 rpsP   FALSE 0.012 135.000 0.002 1.000   NA
 6345351 6345352 C1A_115 C1A_116     FALSE 0.012 494.000 0.000 NA   NA
 6345352 6345353 C1A_116 C1A_117   rho FALSE 0.089 195.000 0.005 NA   NA
 6345354 6345355 C1A_118 C1A_119 guaB ksgA FALSE 0.011 133.000 0.003 1.000 N NA
 6345356 6345357 C1A_t1 C1A_120 trnT tpiA TRUE 0.616 25.000 0.000 NA   NA
 6345357 6345358 C1A_120 C1A_121 tpiA murD FALSE 0.034 175.000 0.000 1.000 N NA
 6345358 6345359 C1A_121 C1A_122 murD   TRUE 0.554 19.000 0.003 1.000   NA
 6345360 6345361 C1A_123 C1A_124     FALSE 0.222 97.000 0.000 NA   NA
 6345362 6345363 C1A_125 C1A_126     FALSE 0.050 225.000 0.000 NA   NA
 6345364 6345365 C1A_127 C1A_t9   trnQ FALSE 0.152 139.000 0.000 NA   NA
 6345365 6345366 C1A_t9 C1A_128 trnQ cutA TRUE 0.891 -9.000 0.000 NA   NA
 6345368 6345369 C1A_130 C1A_131 nth   TRUE 0.489 22.000 0.003 1.000   NA
 6345369 6345370 C1A_131 C1A_132     TRUE 0.580 83.000 0.034 1.000   NA
 6345370 6345371 C1A_132 C1A_133     FALSE 0.006 602.000 0.000 1.000   NA
 6345371 6345372 C1A_133 C1A_134   purD FALSE 0.006 482.000 0.000 1.000   NA
 6345372 6345373 C1A_134 C1A_135 purD serS FALSE 0.296 32.000 0.004 0.098 N NA
 6345374 6345375 C1A_136 C1A_137     FALSE 0.279 62.000 0.000 NA   NA
 6345376 6345377 C1A_138 C1A_139 rpoBC rplL TRUE 0.407 59.000 0.008 1.000 N NA
 6345377 6345378 C1A_139 C1A_140 rplL rplJ TRUE 0.993 27.000 0.884 0.031 Y NA
 6345378 6345379 C1A_140 C1A_141 rplJ rplA TRUE 0.993 13.000 0.302 0.040 Y NA
 6345379 6345380 C1A_141 C1A_142 rplA rplK TRUE 0.999 5.000 0.838 0.040 Y NA
 6345380 6345381 C1A_142 C1A_143 rplK   TRUE 0.998 3.000 0.681 1.000 N NA
 6345381 6345382 C1A_143 C1A_144   secE TRUE 0.954 56.000 0.843 1.000   NA
 6345382 6345383 C1A_144 C1A_t8 secE trnW TRUE 0.729 20.000 0.000 NA   NA
 6345383 6345384 C1A_t8 C1A_145 trnW tuf TRUE 0.840 13.000 0.000 NA   NA
 6345384 6345385 C1A_145 C1A_146 tuf fusA TRUE 0.988 13.000 0.102 0.003 Y NA
 6345385 6345386 C1A_146 C1A_147 fusA rpsG TRUE 0.870 61.000 0.114 1.000 Y NA
 6345386 6345387 C1A_147 C1A_148 rpsG rpsL TRUE 0.998 6.000 0.620 0.005 Y NA
 6345388 6345389 C1A_149 C1A_150     FALSE 0.128 152.000 0.000 NA   NA
 6345391 6345392 C1A_t2 C1A_152 trnL   FALSE 0.122 156.000 0.000 NA   NA
 6345392 6345393 C1A_152 C1A_153   clpP TRUE 0.994 13.000 0.351 1.000 Y NA
 6345393 6345394 C1A_153 C1A_154 clpP clpX TRUE 0.998 0.000 0.352 1.000 Y NA
 6345394 6345395 C1A_154 C1A_155 clpX lon TRUE 0.990 16.000 0.201 0.098 Y NA
 6345396 6345397 C1A_156 C1A_157     TRUE 0.910 21.000 0.039 1.000 N NA
 6345398 6345399 C1A_158 C1A_159     FALSE 0.236 81.000 0.000 NA   NA
 6345399 6345400 C1A_159 C1A_160   ftsZ FALSE 0.029 291.000 0.000 NA   NA
 6345400 6345401 C1A_160 C1A_161 ftsZ   TRUE 0.966 0.000 0.006 NA   NA
 6345401 6345402 C1A_161 C1A_162     TRUE 0.941 -6.000 0.005 NA   NA
 6345402 6345403 C1A_162 C1A_163   sdhB FALSE 0.281 55.000 0.003 NA   NA
 6345404 6345405 C1A_164 C1A_165     TRUE 0.967 36.000 0.700 1.000   NA
 6345405 6345406 C1A_165 C1A_166     TRUE 0.960 -10.000 0.018 1.000   NA
 6345406 6345407 C1A_166 C1A_167   gpsA FALSE 0.208 77.000 0.005 1.000 N NA
 6345409 6345410 C1A_169 C1A_170     FALSE 0.008 1132.000 0.000 NA   NA
 6345411 6345412 C1A_171 C1A_172 nuoE tgt TRUE 0.868 1.000 0.004 1.000 N NA
 6345412 6345413 C1A_172 C1A_173 tgt   FALSE 0.144 104.000 0.003 NA   NA
 6345414 6345415 C1A_174 C1A_175   sodB TRUE 0.953 2.000 0.007 1.000   NA
 6345418 6345419 C1A_178 C1A_179     FALSE 0.066 150.000 0.000 0.063   NA
 6345420 6345421 C1A_180 C1A_181     FALSE 0.229 105.000 0.004 NA   NA
 6345421 6345422 C1A_181 C1A_182     TRUE 0.995 -13.000 0.600 NA   NA
 6345422 6345423 C1A_182 C1A_183     TRUE 0.874 166.000 1.000 0.003   NA
 6345423 6345424 C1A_183 C1A_184     TRUE 0.998 0.000 0.333 0.003 Y NA
 6345424 6345425 C1A_184 C1A_185     TRUE 0.997 18.000 0.818 0.003 Y NA
 6345425 6345426 C1A_185 C1A_186     TRUE 0.998 -7.000 0.579 1.000 Y NA
 6345426 6345427 C1A_186 C1A_187     TRUE 0.999 10.000 0.789 NA Y NA
 6345429 6345430 C1A_189 C1A_190     FALSE 0.088 176.000 0.000 NA   NA
 6345430 6345431 C1A_190 C1A_191     FALSE 0.246 76.000 0.000 NA   NA
 6345431 6345432 C1A_191 C1A_192     TRUE 0.984 11.000 0.130 NA   NA
 6345433 6345434 C1A_193 C1A_194 rplM rpsI TRUE 0.993 12.000 0.231 0.030 Y NA
 6345434 6345435 C1A_194 C1A_195 rpsI   FALSE 0.361 135.000 0.012 NA N NA
 6345439 6345440 C1A_199 C1A_200   pccA TRUE 0.444 143.000 0.021 NA   NA
 6345441 6345442 C1A_201 C1A_202     TRUE 0.640 39.000 0.009 NA N NA
 6345442 6345443 C1A_202 C1A_203     TRUE 0.981 6.000 0.020 NA N NA
 6345443 6345444 C1A_203 C1A_204     TRUE 0.992 8.000 0.040 0.008 Y NA
 6345444 6345445 C1A_204 C1A_205   atpE TRUE 0.994 4.000 0.278 0.008   NA
 6345445 6345446 C1A_205 C1A_206 atpE atpB TRUE 0.912 60.000 0.628 0.008   NA
 6345447 6345448 C1A_207 C1A_208   pheT FALSE 0.199 113.000 0.000 NA   NA
 6345449 6345450 C1A_209 C1A_210   ileS TRUE 0.488 45.000 0.005 NA   NA
 6345450 6345451 C1A_210 C1A_211 ileS   FALSE 0.039 442.000 0.000 1.000 Y NA
 6345454 6345455 C1A_214 C1A_215   fabK TRUE 0.987 6.000 0.086 0.011   NA
 6345455 6345456 C1A_215 C1A_216 fabK   TRUE 0.593 133.000 0.065 NA   NA
 6345456 6345457 C1A_216 C1A_217     TRUE 0.906 105.000 0.667 NA   NA
 6345457 6345458 C1A_217 C1A_218     TRUE 0.863 52.000 0.200 NA   NA
 6345458 6345459 C1A_218 C1A_219     TRUE 0.984 -19.000 0.200 NA   NA
 6345460 6345461 C1A_220 C1A_221     FALSE 0.225 92.000 0.000 NA   NA
 6345461 6345462 C1A_221 C1A_222     TRUE 0.924 6.000 0.000 NA   NA
 6345462 6345463 C1A_222 C1A_223     FALSE 0.220 98.000 0.000 NA   NA
 6345463 6345464 C1A_223 C1A_224     TRUE 0.725 95.000 0.125 NA   NA
 6345464 6345465 C1A_224 C1A_225   gidA FALSE 0.257 32.000 0.003 1.000 N NA
 6345465 6345466 C1A_225 C1A_226 gidA   FALSE 0.228 90.000 0.000 NA   NA
 6345466 6345467 C1A_226 C1A_t7   trnH FALSE 0.134 148.000 0.000 NA   NA
 6345468 6345469 C1A_227 C1A_228 mviN   FALSE 0.039 254.000 0.000 NA   NA
 6345469 6345470 C1A_228 C1A_229     TRUE 0.924 -3.000 0.000 NA   NA
 6345471 6345472 C1A_230 C1A_231     FALSE 0.319 54.000 0.000 NA   NA
 6345473 6345474 C1A_232 C1A_233 lipB   TRUE 0.884 0.000 0.003 NA N NA
 6345475 6345476 C1A_234 C1A_t6   trnM FALSE 0.007 1703.000 0.000 NA   NA
 6345476 6345477 C1A_t6 C1A_235 trnM purB TRUE 0.891 -9.000 0.000 NA   NA
 6345477 6345478 C1A_235 C1A_236 purB   TRUE 0.808 8.000 0.002 NA   NA
 6345478 6345479 C1A_236 C1A_237   rplI TRUE 0.845 7.000 0.002 NA   NA
 6345479 6345480 C1A_237 C1A_238 rplI rpsF FALSE 0.090 282.000 0.000 0.030 Y NA
 6345480 6345481 C1A_238 C1A_239 rpsF dnaE FALSE 0.303 29.000 0.003 1.000 N NA
 6345483 6345484 C1A_241 C1A_242 fmt rplT TRUE 0.692 35.000 0.003 0.046 Y NA
 6345484 6345485 C1A_242 C1A_243 rplT   FALSE 0.023 327.000 0.000 NA   NA
 6345485 6345486 C1A_243 C1A_244     FALSE 0.057 212.000 0.000 NA   NA
 6345486 6345487 C1A_244 C1A_245     FALSE 0.030 290.000 0.000 NA   NA
 6345488 6345489 C1A_246 C1A_t3 alaS trnN FALSE 0.061 204.000 0.000 NA   NA
 6345492 6345493 C1A_249 C1A_250   fabD FALSE 0.310 56.000 0.000 NA   NA
 6345494 6345495 C1A_251 C1A_252 rpmE ppnK TRUE 0.871 22.000 0.018 1.000   NA
 6345495 6345496 C1A_252 C1A_253 ppnK   FALSE 0.232 84.000 0.000 NA   NA
 6345496 6345497 C1A_253 C1A_254     FALSE 0.183 124.000 0.000 NA   NA
 6345497 6345498 C1A_254 C1A_255   pyrB FALSE 0.098 81.000 0.000 1.000 N NA
 6345498 6345499 C1A_255 C1A_256 pyrB   FALSE 0.010 631.000 0.000 NA   NA
 6345499 6345500 C1A_256 C1A_257     TRUE 0.929 5.000 0.000 NA   NA
 6345500 6345501 C1A_257 C1A_258   gmk TRUE 0.461 36.000 0.000 NA   NA
 6345501 6345502 C1A_258 C1A_259 gmk   FALSE 0.043 245.000 0.000 NA   NA
 6345503 6345504 C1A_260 C1A_261 sdhA   FALSE 0.063 203.000 0.000 NA   NA
 6345506 6345507 C1A_263 C1A_264     TRUE 0.993 1.000 0.158 NA   NA
 6345508 6345509 C1A_265 C1A_266     FALSE 0.023 327.000 0.000 NA   NA
 6345510 6345511 C1A_267 C1A_268     FALSE 0.033 278.000 0.000 NA   NA
 6345511 6345512 C1A_268 C1A_269   dapE FALSE 0.003 1565.000 0.000 1.000 N NA
 6345513 6345514 C1A_270 C1A_271     FALSE 0.009 851.000 0.000 NA   NA
 6345515 6345516 C1A_272 C1A_273 folA   TRUE 0.958 0.000 0.007 1.000   NA
 6345516 6345517 C1A_273 C1A_274     TRUE 0.865 126.000 0.667 0.002   NA
 6345517 6345518 C1A_274 C1A_275   folB TRUE 0.974 -3.000 0.000 1.000 Y NA
 6345518 6345519 C1A_275 C1A_276 folB   TRUE 0.932 23.000 0.012 1.000 Y NA
 6345520 6345521 C1A_277 C1A_278     FALSE 0.020 346.000 0.000 NA   NA
 6345522 6345523 C1A_279 C1A_280     FALSE 0.024 317.000 0.000 NA   NA
 6345523 6345524 C1A_280 C1A_t5   trnM FALSE 0.231 85.000 0.000 NA   NA
 6345524 6345525 C1A_t5 C1A_281 trnM trx TRUE 0.409 40.000 0.000 NA   NA
 6345525 6345526 C1A_281 C1A_282 trx   FALSE 0.266 80.000 0.006 1.000   NA
 6345527 6345528 C1A_t4 C1A_283 trnG   FALSE 0.214 103.000 0.000 NA   NA
 6345528 6345529 C1A_283 C1A_284   era FALSE 0.388 42.000 0.000 NA   NA
 6345529 6345530 C1A_284 C1A_285 era   TRUE 0.977 -7.000 0.035 1.000   NA
 6345533 6345534 C1A_1128 C1A_1129     TRUE 0.892 168.000 1.000 NA   NA
 6345534 6345535 C1A_1129 C1A_1130     TRUE 0.990 26.000 1.000 NA   NA
 6345535 6345536 C1A_1130 C1A_1131     TRUE 0.929 5.000 0.000 NA   NA
 6345536 6345537 C1A_1131 C1A_1132     TRUE 0.995 10.000 0.500 NA   NA
 6345538 6345539 C1A_1133 C1A_1134     FALSE 0.043 246.000 0.000 NA   NA
 6345540 6345541 C1A_1135 C1A_1136     FALSE 0.019 262.000 0.000 1.000   NA
 6345542 6345543 C1A_1137 C1A_1138     TRUE 0.995 -19.000 0.372 NA Y NA
 6345543 6345544 C1A_1138 C1A_1139     FALSE 0.003 2205.000 0.000 1.000 N NA
 6345544 6345545 C1A_1139 C1A_1140     FALSE 0.013 475.000 0.000 NA   NA
 6345546 6345547 C1A_1141 C1A_1142     FALSE 0.015 282.000 0.000 0.060   NA
 6345547 6345548 C1A_1142 C1A_1143     FALSE 0.120 105.000 0.000 1.000   NA
 6345557 6345558 C1A_1152 C1A_1153     FALSE 0.203 109.000 0.000 NA   NA
 6345559 6345560 C1A_1154 C1A_1155     FALSE 0.008 1008.000 0.000 NA   NA
 6345560 6345561 C1A_1155 C1A_1156     FALSE 0.014 420.000 0.000 NA   NA
 6345563 6345564 C1A_1158 C1A_1159     TRUE 0.933 54.000 0.667 1.000   NA
 6345564 6345565 C1A_1159 C1A_1160     FALSE 0.158 66.000 0.000 1.000   NA
 6345569 6345570 C1A_1164 C1A_1165     FALSE 0.009 824.000 0.000 NA   NA
 6345570 6345571 C1A_1165 C1A_1166     FALSE 0.268 66.000 0.000 NA   NA
 6345574 6345575 C1A_1169 C1A_1170     TRUE 0.954 -28.000 0.029 NA   NA
 6345575 6345576 C1A_1170 C1A_1171   gdhB TRUE 0.991 6.000 0.120 NA   NA
 6345576 6345577 C1A_1171 C1A_1172 gdhB clpB FALSE 0.345 28.000 0.004 1.000 N NA
 6345577 6345578 C1A_1172 C1A_1173 clpB   FALSE 0.022 334.000 0.000 NA   NA
 6345578 6345579 C1A_1173 C1A_1174     TRUE 0.673 22.000 0.000 NA   NA
 6345579 6345580 C1A_1174 C1A_1175     FALSE 0.017 378.000 0.000 NA   NA
 6345580 6345581 C1A_1175 C1A_1176     FALSE 0.167 133.000 0.000 NA   NA
 6345582 6345583 C1A_1177 C1A_1178     TRUE 0.860 -13.000 0.000 NA   NA
 6345583 6345584 C1A_1178 C1A_1179     FALSE 0.010 646.000 0.000 NA   NA
 6345585 6345586 C1A_1180 C1A_1181     FALSE 0.008 1444.000 0.000 NA   NA
 6345586 6345587 C1A_1181 C1A_1182     TRUE 0.997 3.000 0.500 NA   NA
 6345587 6345588 C1A_1182 C1A_1183     TRUE 0.929 5.000 0.000 NA   NA
 6345588 6345589 C1A_1183 C1A_1184     TRUE 0.429 39.000 0.000 NA   NA
 6345589 6345590 C1A_1184 C1A_1185     TRUE 0.858 12.000 0.000 NA   NA
 6345590 6345591 C1A_1185 C1A_1186     FALSE 0.010 666.000 0.000 NA   NA
 6345591 6345592 C1A_1186 C1A_1187     TRUE 0.993 0.000 0.167 NA   NA
 6345592 6345593 C1A_1187 C1A_1188     TRUE 0.994 3.000 0.167 NA   NA
 6345593 6345594 C1A_1188 C1A_1189     TRUE 0.935 3.000 0.000 NA   NA
 6345594 6345595 C1A_1189 C1A_1190     TRUE 0.995 0.000 0.250 NA   NA
 6345595 6345596 C1A_1190 C1A_1191     TRUE 0.989 -13.000 0.250 NA   NA
 6345596 6345597 C1A_1191 C1A_1192     TRUE 0.924 -3.000 0.000 NA   NA
 6345597 6345598 C1A_1192 C1A_1193     TRUE 0.879 -10.000 0.000 NA   NA
 6345598 6345599 C1A_1193 C1A_1194     TRUE 0.765 18.000 0.000 NA   NA
 6345599 6345600 C1A_1194 C1A_1195     FALSE 0.014 425.000 0.000 NA   NA
 6345600 6345601 C1A_1195 C1A_1196     TRUE 0.802 142.000 0.500 NA   NA
 6345601 6345602 C1A_1196 C1A_1197     TRUE 0.986 21.000 0.667 1.000   NA
 6345602 6345603 C1A_1197 C1A_1198     TRUE 0.883 1.000 0.000 1.000   NA
 6345603 6345604 C1A_1198 C1A_1199     TRUE 0.879 -10.000 0.000 NA   NA
 6345604 6345605 C1A_1199 C1A_1200     TRUE 0.772 -42.000 0.000 NA   NA
 6345605 6345606 C1A_1200 C1A_1201     TRUE 0.934 0.000 0.000 NA   NA
 6345606 6345607 C1A_1201 C1A_1202     TRUE 0.961 69.000 1.000 NA   NA
 6345607 6345608 C1A_1202 C1A_1203     TRUE 0.996 8.000 0.500 NA   NA
 6345608 6345609 C1A_1203 C1A_1204     TRUE 0.997 -3.000 0.500 NA   NA
 6345609 6345610 C1A_1204 C1A_1205     FALSE 0.039 115.000 0.002 1.000   NA
 6345610 6345611 C1A_1205 C1A_1206     TRUE 0.704 -19.000 0.000 0.014   NA
 6345611 6345612 C1A_1206 C1A_1207     FALSE 0.010 656.000 0.000 NA   NA
 6345612 6345613 C1A_1207 C1A_1208     FALSE 0.258 70.000 0.000 NA   NA
 6345613 6345614 C1A_1208 C1A_1209     FALSE 0.013 455.000 0.000 NA   NA
 6345614 6345615 C1A_1209 C1A_1210     FALSE 0.017 376.000 0.000 NA   NA
 6345615 6345616 C1A_1210 C1A_1211     FALSE 0.220 98.000 0.000 NA   NA
 6345616 6345617 C1A_1211 C1A_1212     TRUE 0.764 -49.000 0.000 NA   NA
 6345618 6345619 C1A_1213 C1A_1214     FALSE 0.012 531.000 0.000 NA   NA
 6345619 6345620 C1A_1214 C1A_1215     TRUE 0.475 35.000 0.000 NA   NA
 6345620 6345621 C1A_1215 C1A_1216     TRUE 0.492 34.000 0.000 NA   NA
 6345623 6345624 C1A_1218 C1A_1219     FALSE 0.274 64.000 0.000 NA   NA
 6345625 6345626 C1A_1220 C1A_1221     TRUE 0.416 26.000 0.000 0.012   NA
 6345626 6345627 C1A_1221 C1A_1222     FALSE 0.227 91.000 0.000 NA   NA
 6345627 6345628 C1A_1222 C1A_1223     FALSE 0.137 146.000 0.000 NA   NA
 6345628 6345629 C1A_1223 C1A_1224     TRUE 0.826 203.000 1.000 NA   NA
 6345629 6345630 C1A_1224 C1A_1225     FALSE 0.054 171.000 0.000 1.000   NA
 6345630 6345631 C1A_1225 C1A_1226   mutL FALSE 0.059 68.000 0.002 1.000   NA
 6345631 6345632 C1A_1226 C1A_1227 mutL mutL TRUE 0.970 -3.000 0.014 0.005   NA
 6345632 6345633 C1A_1227 C1A_1228 mutL rnhA TRUE 0.891 -9.000 0.000 NA   NA
 6345633 6345634 C1A_1228 C1A_1229 rnhA rnhA FALSE 0.310 56.000 0.000 NA   NA
 6345635 6345636 C1A_1230 C1A_1231     TRUE 0.913 -6.000 0.000 NA   NA
 6345636 6345637 C1A_1231 C1A_1232     TRUE 0.879 -10.000 0.000 NA   NA
 6345637 6345638 C1A_1232 C1A_1233     TRUE 0.883 1.000 0.000 1.000   NA
 6345638 6345639 C1A_1233 C1A_1234     FALSE 0.207 107.000 0.000 NA   NA
 6345639 6345640 C1A_1234 C1A_1235     TRUE 0.769 -46.000 0.000 NA   NA
 6345640 6345641 C1A_1235 C1A_1236     FALSE 0.113 107.000 0.000 0.007   NA
 6345641 6345642 C1A_1236 C1A_1237     TRUE 0.986 21.000 0.667 1.000   NA
 6345642 6345643 C1A_1237 C1A_1238     TRUE 0.802 142.000 0.500 NA   NA
 6345643 6345644 C1A_1238 C1A_1239     FALSE 0.014 425.000 0.000 NA   NA
 6345644 6345645 C1A_1239 C1A_1240     FALSE 0.080 185.000 0.000 NA   NA
 6345645 6345646 C1A_1240 C1A_1241     TRUE 0.936 2.000 0.000 NA   NA
 6345646 6345647 C1A_1241 C1A_1242     TRUE 0.924 -3.000 0.000 NA   NA
 6345647 6345648 C1A_1242 C1A_1243     TRUE 0.989 -13.000 0.250 NA   NA
 6345648 6345649 C1A_1243 C1A_1244     TRUE 0.995 0.000 0.250 NA   NA
 6345649 6345650 C1A_1244 C1A_1245     TRUE 0.935 3.000 0.000 NA   NA
 6345650 6345651 C1A_1245 C1A_1246     TRUE 0.994 3.000 0.167 NA   NA
 6345651 6345652 C1A_1246 C1A_1247     TRUE 0.993 0.000 0.167 NA   NA
 6345652 6345653 C1A_1247 C1A_1248     TRUE 0.892 168.000 1.000 NA   NA
 6345653 6345654 C1A_1248 C1A_1249     TRUE 0.990 26.000 1.000 NA   NA
 6345654 6345655 C1A_1249 C1A_1250     TRUE 0.929 5.000 0.000 NA   NA
 6345655 6345656 C1A_1250 C1A_1251     TRUE 0.995 10.000 0.500 NA   NA
 6345657 6345658 C1A_1252 C1A_1253     FALSE 0.010 650.000 0.000 NA   NA
 6345658 6345659 C1A_1253 C1A_1254     TRUE 0.908 8.000 0.000 NA   NA
 6345662 6345663 C1A_1257 C1A_1258     TRUE 0.571 27.000 0.000 NA   NA
 6345663 6345664 C1A_1258 C1A_1259     FALSE 0.018 371.000 0.000 NA   NA
 6345666 6345667 C1A_1300 C1A_1301     TRUE 0.997 13.000 1.000 NA   NA
 6345667 6345668 C1A_1301 C1A_1302     TRUE 0.970 54.000 1.000 NA   NA
 6345668 6345669 C1A_1302 C1A_1303     FALSE 0.205 108.000 0.000 NA   NA
 6345670 6345671 C1A_1304 C1A_1305 rnhA mutL TRUE 0.809 -9.000 0.000 1.000   NA
 6345671 6345672 C1A_1305 C1A_1306 mutL mutL FALSE 0.303 144.000 0.014 0.005   NA
 6345674 6345675 C1A_1308 C1A_1309     FALSE 0.054 171.000 0.000 1.000   NA
 6345675 6345676 C1A_1309 C1A_1310     TRUE 0.886 171.000 1.000 NA   NA
 6345676 6345677 C1A_1310 C1A_1311     FALSE 0.225 92.000 0.000 NA   NA
 6345677 6345678 C1A_1311 C1A_1312     FALSE 0.209 47.000 0.000 0.012   NA
 6345679 6345680 C1A_1313 C1A_1314     TRUE 0.942 21.000 0.051 NA   NA
 6345680 6345681 C1A_1314 C1A_1315     FALSE 0.252 73.000 0.000 NA   NA
 6345681 6345682 C1A_1315 C1A_1316     TRUE 0.826 14.000 0.000 NA   NA
 6345682 6345683 C1A_1316 C1A_1317     TRUE 0.936 1.000 0.000 NA   NA
 6345683 6345684 C1A_1317 C1A_1318     TRUE 0.924 -3.000 0.000 NA   NA
 6345684 6345685 C1A_1318 C1A_1319     TRUE 0.934 0.000 0.000 NA   NA
 6345685 6345686 C1A_1319 C1A_1320     FALSE 0.196 116.000 0.000 NA   NA
 6345686 6345687 C1A_1320 C1A_1321     TRUE 0.451 37.000 0.000 NA   NA
 6345687 6345688 C1A_1321 C1A_1322     TRUE 0.976 16.000 0.133 NA   NA
 6345688 6345689 C1A_1322 C1A_1323     TRUE 0.904 -7.000 0.000 NA   NA
 6345689 6345690 C1A_1323 C1A_1324     TRUE 0.994 -25.000 0.667 NA   NA
 6345690 6345691 C1A_1324 C1A_1325     FALSE 0.180 126.000 0.000 NA   NA
 6345691 6345692 C1A_1325 C1A_1326     TRUE 0.998 -3.000 0.750 NA   NA
 6345692 6345693 C1A_1326 C1A_1327     TRUE 0.997 5.000 0.500 NA   NA
 6345693 6345694 C1A_1327 C1A_1328     TRUE 0.993 -28.000 0.667 NA   NA
 6345696 6345697 C1A_1330 C1A_1331     FALSE 0.112 163.000 0.000 NA   NA
 6345697 6345698 C1A_1331 C1A_1332     FALSE 0.328 53.000 0.000 NA   NA
 6345699 6345700 C1A_1333 C1A_1334     TRUE 0.879 -10.000 0.000 NA   NA
 6345700 6345701 C1A_1334 C1A_1335     TRUE 0.800 218.000 1.000 NA   NA
 6345701 6345702 C1A_1335 C1A_1336     TRUE 0.918 7.000 0.000 NA   NA
 6345703 6345704 C1A_1337 C1A_1338     FALSE 0.008 926.000 0.000 NA   NA
 6345704 6345705 C1A_1338 C1A_1339     FALSE 0.380 43.000 0.000 NA   NA
 6345705 6345706 C1A_1339 C1A_1340     FALSE 0.328 53.000 0.000 NA   NA
 6345706 6345707 C1A_1340 C1A_1341     TRUE 0.409 40.000 0.000 NA   NA
 6345707 6345708 C1A_1341 C1A_1342     TRUE 0.993 17.000 0.667 NA   NA
 6345709 6345710 C1A_1261 C1A_1262     TRUE 0.993 17.000 0.667 NA   NA
 6345710 6345711 C1A_1262 C1A_1263     TRUE 0.729 20.000 0.000 NA   NA
 6345711 6345712 C1A_1263 C1A_1264     TRUE 0.442 38.000 0.000 NA   NA
 6345712 6345713 C1A_1264 C1A_1265     TRUE 0.409 40.000 0.000 NA   NA
 6345713 6345714 C1A_1265 C1A_1266     FALSE 0.380 43.000 0.000 NA   NA
 6345714 6345715 C1A_1266 C1A_1267     FALSE 0.008 923.000 0.000 NA   NA
 6345716 6345717 C1A_1268 C1A_1269     TRUE 0.794 220.000 1.000 NA   NA
 6345718 6345719 C1A_1270 C1A_1271     TRUE 0.995 7.000 0.333 NA   NA
 6345721 6345722 C1A_1273 C1A_1274     TRUE 0.993 -28.000 0.667 NA   NA
 6345722 6345723 C1A_1274 C1A_1275     TRUE 0.997 5.000 0.500 NA   NA
 6345723 6345724 C1A_1275 C1A_1276     TRUE 0.998 -3.000 0.750 NA   NA
 6345724 6345725 C1A_1276 C1A_1277     TRUE 0.994 -25.000 0.667 NA   NA
 6345725 6345726 C1A_1277 C1A_1278     TRUE 0.904 -7.000 0.000 NA   NA
 6345726 6345727 C1A_1278 C1A_1279     TRUE 0.976 16.000 0.133 NA   NA
 6345727 6345728 C1A_1279 C1A_1280     TRUE 0.964 62.000 1.000 NA   NA
 6345728 6345729 C1A_1280 C1A_1281     TRUE 0.843 -16.000 0.000 NA   NA
 6345729 6345730 C1A_1281 C1A_1282     FALSE 0.232 84.000 0.000 NA   NA
 6345730 6345731 C1A_1282 C1A_1283     TRUE 0.822 15.000 0.000 NA   NA
 6345731 6345732 C1A_1283 C1A_1284     TRUE 0.837 -18.000 0.000 NA   NA
 6345732 6345733 C1A_1284 C1A_1285     TRUE 0.999 0.000 1.000 NA   NA
 6345733 6345734 C1A_1285 C1A_1286     TRUE 0.999 -3.000 1.000 NA   NA
 6345734 6345735 C1A_1286 C1A_1287     TRUE 0.999 1.000 1.000 NA   NA
 6345735 6345736 C1A_1287 C1A_1288     FALSE 0.328 53.000 0.000 NA   NA
 6345736 6345737 C1A_1288 C1A_1289     FALSE 0.027 298.000 0.000 NA   NA
 6345738 6345739 C1A_1290 C1A_1291     FALSE 0.094 172.000 0.000 NA   NA
 6345739 6345740 C1A_1291 C1A_1292     TRUE 0.636 24.000 0.000 NA   NA
 6345740 6345741 C1A_1292 C1A_1293     TRUE 0.951 100.000 1.000 NA   NA
 6345741 6345742 C1A_1293 C1A_1294     TRUE 0.864 171.000 1.000 1.000   NA
 6345742 6345743 C1A_1294 C1A_1295     FALSE 0.018 267.000 0.000 1.000   NA
 6345744 6345745 C1A_1296 C1A_1297     FALSE 0.205 108.000 0.000 NA   NA
 6345747 6345748 C1A_2 C1A_3     FALSE 0.017 375.000 0.000 NA   NA
 6345748 6345749 C1A_3 C1A_4     FALSE 0.007 1618.000 0.000 NA   NA
 6345749 6345750 C1A_4 C1A_5     TRUE 0.879 -10.000 0.000 NA   NA
 6345750 6345751 C1A_5 C1A_6     FALSE 0.083 182.000 0.000 NA   NA
 6345752 6345753 C1A_7 C1A_8     FALSE 0.201 112.000 0.000 NA   NA
 6345753 6345754 C1A_8 C1A_9     TRUE 0.997 -24.000 1.000 NA   NA
 6345754 6345755 C1A_9 C1A_10   dnaB FALSE 0.055 216.000 0.000 NA   NA
 6345759 6345760 C1A_1359 C1A_1360     FALSE 0.051 223.000 0.000 NA   NA
 6345760 6345761 C1A_1360 C1A_1361     FALSE 0.084 181.000 0.000 NA   NA
 6345761 6345762 C1A_1361 C1A_1362     FALSE 0.371 44.000 0.000 NA   NA
 6345762 6345763 C1A_1362 C1A_1363     TRUE 0.811 84.000 0.250 NA   NA
 6345763 6345764 C1A_1363 C1A_1364     TRUE 0.990 -10.000 0.250 NA   NA
 6345764 6345765 C1A_1364 C1A_1365     TRUE 0.924 -3.000 0.000 NA   NA
 6345765 6345766 C1A_1365 C1A_1366     TRUE 0.936 2.000 0.000 NA   NA
 6345766 6345767 C1A_1366 C1A_1367     FALSE 0.248 75.000 0.000 NA   NA
 6345768 6345769 C1A_1376 C1A_1374     FALSE 0.319 54.000 0.000 NA   NA
 6345769 6345770 C1A_1374 C1A_1371     TRUE 0.996 0.000 0.400 NA   NA
 6345770 6345771 C1A_1371 C1A_1372     TRUE 0.993 -10.000 0.400 NA   NA
 6345771 6345772 C1A_1372 C1A_1373     TRUE 0.571 27.000 0.000 NA   NA
 6345772 6345773 C1A_1373 C1A_1375     TRUE 0.879 -10.000 0.000 NA   NA
 6345774 6345775 C1A_1298 C1A_1299     TRUE 0.970 54.000 1.000 NA   NA
 6345776 6345777 C1A_1347 C1A_1348     TRUE 0.993 0.000 0.167 NA   NA
 6345777 6345778 C1A_1348 C1A_1345     FALSE 0.137 146.000 0.000 NA   NA
 6345781 6345782 C1A_1356 C1A_1357     FALSE 0.008 1134.000 0.000 NA   NA
 6345785 6345786 C1A_1353 C1A_1354     FALSE 0.110 165.000 0.000 NA   NA
 6345787 6345788 C1A_1351 C1A_1352     FALSE 0.124 85.000 0.000 0.053   NA