MicrobesOnline Operon Predictions for Streptococcus pneumoniae G54

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 5755270 5755271 SPG_0001 SPG_0002 dnaA dnaN TRUE 0.641 159.000 0.328 1.000 Y NA
 5755271 5755272 SPG_0002 SPG_0003 dnaN   TRUE 0.576 65.000 0.009 NA   NA
 5755272 5755273 SPG_0003 SPG_0004     TRUE 0.484 84.000 0.064 NA   NA
 5755273 5755274 SPG_0004 SPG_0005   pth TRUE 0.896 71.000 0.184 1.000 Y NA
 5755274 5755275 SPG_0005 SPG_0006 pth mfd TRUE 0.982 1.000 0.137 1.000 N NA
 5755275 5755276 SPG_0006 SPG_0007 mfd   TRUE 0.718 58.000 0.024 1.000 N NA
 5755276 5755277 SPG_0007 SPG_0008     TRUE 0.974 -7.000 0.053 1.000 N NA
 5755277 5755278 SPG_0008 SPG_0009     TRUE 0.928 5.000 0.009 NA   NA
 5755278 5755279 SPG_0009 SPG_0010     TRUE 0.979 -7.000 0.105 NA   NA
 5755279 5755280 SPG_0010 SPG_0011   tilS TRUE 0.958 -3.000 0.014 NA N NA
 5755280 5755281 SPG_0011 SPG_0012 tilS hpt TRUE 0.985 4.000 0.067 0.064 N NA
 5755281 5755282 SPG_0012 SPG_0013 hpt   TRUE 0.963 16.000 0.192 1.000 N NA
 5755282 5755283 SPG_0013 SPG_0014     FALSE 0.160 122.000 0.006 1.000   NA
 5755283 5755284 SPG_0014 SPG_0015     FALSE 0.143 94.000 0.000 NA   NA
 5755284 5755285 SPG_0015 SPG_0016   rrsA FALSE 0.037 266.000 0.000 NA   NA
 5755285 5755286 SPG_0016 SPG_0017 rrsA   FALSE 0.083 127.000 0.000 NA   NA
 5755286 5755287 SPG_0017 SPG_0018   rrlA FALSE 0.085 125.000 0.000 NA   NA
 5755287 5755288 SPG_0018 SPG_0019 rrlA rrfA FALSE 0.257 77.000 0.000 NA   NA
 5755288 5755289 SPG_0019 SPG_0020 rrfA   TRUE 0.862 6.000 0.000 NA   NA
 5755290 5755291 SPG_0021 SPG_0022     TRUE 0.679 33.000 0.000 NA   NA
 5755291 5755292 SPG_0022 SPG_0023     TRUE 0.585 48.000 0.000 NA   NA
 5755293 5755294 SPG_0024 SPG_0025   purA FALSE 0.058 189.000 0.000 NA   NA
 5755294 5755295 SPG_0025 SPG_0026 purA   FALSE 0.209 201.000 0.000 1.000 Y NA
 5755295 5755296 SPG_0026 SPG_0027     TRUE 0.866 -34.000 0.000 NA   NA
 5755296 5755297 SPG_0027 SPG_0028   dut FALSE 0.041 251.000 0.000 NA   NA
 5755297 5755298 SPG_0028 SPG_0029 dut   TRUE 0.912 -40.000 0.005 NA N NA
 5755298 5755299 SPG_0029 SPG_0030   radA FALSE 0.141 113.000 0.003 NA N NA
 5755299 5755300 SPG_0030 SPG_0031 radA   TRUE 0.480 73.000 0.009 1.000 N NA
 5755300 5755301 SPG_0031 SPG_0032     TRUE 0.929 25.000 0.111 NA   NA
 5755301 5755302 SPG_0032 SPG_0033     TRUE 0.908 -7.000 0.000 NA   NA
 5755302 5755303 SPG_0033 SPG_0034   prs1 FALSE 0.072 145.000 0.000 NA   NA
 5755304 5755305 SPG_0035 SPG_0036     TRUE 0.908 -7.000 0.000 NA   NA
 5755305 5755306 SPG_0036 SPG_0037     FALSE 0.049 215.000 0.000 NA   NA
 5755307 5755308 SPG_0038 SPG_0039 polA   FALSE 0.283 85.000 0.005 NA   NA
 5755310 5755311 SPG_0041 SPG_0042   recO TRUE 0.960 -3.000 0.012 1.000 N NA
 5755311 5755312 SPG_0042 SPG_0043 recO   TRUE 0.959 -3.000 0.011 1.000 N NA
 5755312 5755313 SPG_0043 SPG_0044     TRUE 0.993 6.000 0.017 0.009 Y NA
 5755313 5755314 SPG_0044 SPG_0045     TRUE 0.609 43.000 0.000 NA N NA
 5755314 5755315 SPG_0045 SPG_0046     FALSE 0.054 203.000 0.000 NA   NA
 5755315 5755316 SPG_0046 SPG_0047     TRUE 0.883 3.000 0.000 NA   NA
 5755316 5755317 SPG_0047 SPG_0048   comA FALSE 0.016 587.000 0.000 NA   NA
 5755317 5755318 SPG_0048 SPG_0049 comA comB TRUE 0.990 13.000 0.444 0.075   NA
 5755318 5755319 SPG_0049 SPG_0050 comB purC FALSE 0.112 170.000 0.004 1.000   NA
 5755319 5755320 SPG_0050 SPG_0051 purC purL TRUE 0.909 57.000 0.043 1.000 Y NA
 5755320 5755321 SPG_0051 SPG_0052 purL purF TRUE 0.600 93.000 0.024 1.000 Y NA
 5755321 5755322 SPG_0052 SPG_0053 purF purM TRUE 0.976 37.000 0.248 1.000 Y NA
 5755322 5755323 SPG_0053 SPG_0054 purM purN TRUE 0.999 -3.000 0.238 0.003 Y NA
 5755323 5755324 SPG_0054 SPG_0055 purN   FALSE 0.275 84.000 0.003 NA N NA
 5755324 5755325 SPG_0055 SPG_0056   purH TRUE 0.795 25.000 0.002 NA N NA
 5755325 5755326 SPG_0056 SPG_0057 purH purD TRUE 0.670 122.000 0.238 1.000 Y NA
 5755326 5755327 SPG_0057 SPG_0058 purD purE FALSE 0.178 403.000 0.044 1.000 Y NA
 5755327 5755328 SPG_0058 SPG_0059 purE purK TRUE 0.996 -13.000 0.008 0.001 Y NA
 5755328 5755329 SPG_0059 SPG_0060 purK   TRUE 0.840 10.000 0.000 NA   NA
 5755329 5755330 SPG_0060 SPG_0061   purB TRUE 0.520 63.000 0.002 NA   NA
 5755331 5755332 SPG_0062 SPG_0063     FALSE 0.031 315.000 0.000 1.000 N NA
 5755333 5755334 SPG_0064 SPG_0065     TRUE 0.995 -3.000 0.190 1.000 Y NA
 5755334 5755335 SPG_0065 SPG_0066     TRUE 0.996 28.000 0.810 0.036 Y NA
 5755335 5755336 SPG_0066 SPG_0067     TRUE 0.989 -13.000 0.000 0.036 Y NA
 5755336 5755337 SPG_0067 SPG_0068     TRUE 0.986 7.000 0.000 0.036 Y NA
 5755337 5755338 SPG_0068 SPG_0069     FALSE 0.079 299.000 0.022 1.000 N NA
 5755338 5755339 SPG_0069 SPG_0070     TRUE 0.294 116.000 0.000 0.031 N NA
 5755339 5755340 SPG_0070 SPG_0071     FALSE 0.066 162.000 0.000 NA   NA
 5755340 5755341 SPG_0071 SPG_0072   cbpI TRUE 0.761 21.000 0.000 NA   NA
 5755343 5755344 SPG_0074 SPG_0075 zmpC   FALSE 0.108 103.000 0.000 NA   NA
 5755344 5755345 SPG_0075 SPG_0076     FALSE 0.074 140.000 0.000 NA   NA
 5755345 5755346 SPG_0076 SPG_0077     FALSE 0.103 106.000 0.000 NA   NA
 5755346 5755347 SPG_0077 SPG_0078     FALSE 0.056 217.000 0.000 1.000   NA
 5755347 5755348 SPG_0078 SPG_0079     FALSE 0.017 613.000 0.000 1.000 N NA
 5755348 5755349 SPG_0079 SPG_0080     TRUE 0.997 14.000 0.490 0.005 Y NA
 5755349 5755350 SPG_0080 SPG_0081     FALSE 0.024 355.000 0.000 NA   NA
 5755350 5755351 SPG_0081 SPG_0082     TRUE 0.376 67.000 0.000 NA   NA
 5755351 5755352 SPG_0082 SPG_0083     FALSE 0.091 116.000 0.000 NA   NA
 5755352 5755353 SPG_0083 SPG_0084     TRUE 0.401 167.000 0.333 1.000   NA
 5755353 5755354 SPG_0084 SPG_0085     TRUE 0.997 -3.000 0.500 1.000 Y NA
 5755354 5755355 SPG_0085 SPG_0086   rpsD FALSE 0.087 195.000 0.002 1.000 N NA
 5755355 5755356 SPG_0086 SPG_0087 rpsD   FALSE 0.013 740.000 0.000 NA   NA
 5755356 5755357 SPG_0087 SPG_0088     TRUE 0.859 -46.000 0.000 NA   NA
 5755357 5755358 SPG_0088 SPG_0089     FALSE 0.027 319.000 0.000 NA   NA
 5755358 5755359 SPG_0089 SPG_0090     TRUE 0.998 14.000 0.917 0.054 Y NA
 5755359 5755360 SPG_0090 SPG_0091     TRUE 0.712 210.000 0.250 0.054 Y NA
 5755360 5755361 SPG_0091 SPG_0092     FALSE 0.036 272.000 0.000 NA   NA
 5755361 5755362 SPG_0092 SPG_0093     FALSE 0.087 122.000 0.000 NA   NA
 5755363 5755364 SPG_0094 SPG_0095     TRUE 0.898 63.000 0.500 NA   NA
 5755364 5755365 SPG_0095 SPG_0096     TRUE 0.982 -7.000 0.150 NA   NA
 5755365 5755366 SPG_0096 SPG_0097     TRUE 0.985 -13.000 0.250 NA   NA
 5755366 5755367 SPG_0097 SPG_0098     FALSE 0.269 139.000 0.100 NA N NA
 5755368 5755369 SPG_0099 SPG_0100     TRUE 0.875 42.000 0.000 NA Y NA
 5755370 5755371 SPG_0101 SPG_0102   sdhA TRUE 0.904 22.000 0.033 1.000   NA
 5755371 5755372 SPG_0102 SPG_0103 sdhA sdhB TRUE 0.998 9.000 0.221 0.001 Y NA
 5755373 5755374 SPG_0104 SPG_0105     FALSE 0.012 1135.000 0.000 NA   NA
 5755374 5755375 SPG_0105 SPG_0106     TRUE 0.992 -3.000 0.520 NA   NA
 5755375 5755376 SPG_0106 SPG_0107     FALSE 0.059 207.000 0.000 1.000 N NA
 5755376 5755377 SPG_0107 SPG_0108   argG TRUE 0.861 17.000 0.002 1.000   NA
 5755379 5755380 SPG_0110 SPG_0111     TRUE 0.914 -3.000 0.000 NA   NA
 5755380 5755381 SPG_0111 SPG_0112     FALSE 0.068 154.000 0.000 NA   NA
 5755381 5755382 SPG_0112 SPG_0113     FALSE 0.023 374.000 0.000 NA   NA
 5755382 5755383 SPG_0113 SPG_0114     FALSE 0.022 383.000 0.000 NA   NA
 5755383 5755384 SPG_0114 SPG_0115     FALSE 0.028 314.000 0.000 NA   NA
 5755384 5755385 SPG_0115 SPG_0116     FALSE 0.018 474.000 0.000 NA   NA
 5755385 5755386 SPG_0116 SPG_0117     FALSE 0.053 208.000 0.000 NA   NA
 5755386 5755387 SPG_0117 SPG_0118     TRUE 0.505 56.000 0.000 NA   NA
 5755387 5755388 SPG_0118 SPG_0119     TRUE 0.914 -3.000 0.000 NA   NA
 5755388 5755389 SPG_0119 SPG_0120     FALSE 0.012 1232.000 0.000 NA   NA
 5755389 5755390 SPG_0120 SPG_0121   pspA FALSE 0.016 554.000 0.000 NA   NA
 5755390 5755391 SPG_0121 SPG_0122 pspA   FALSE 0.042 250.000 0.000 NA   NA
 5755391 5755392 SPG_0122 SPG_0123     TRUE 0.741 23.000 0.000 NA   NA
 5755392 5755393 SPG_0123 SPG_0124     FALSE 0.122 141.000 0.003 1.000 N NA
 5755393 5755394 SPG_0124 SPG_0125   gidA TRUE 0.910 10.000 0.005 1.000 N NA
 5755395 5755396 SPG_0126 SPG_0127     TRUE 0.991 2.000 0.576 NA   NA
 5755396 5755397 SPG_0127 SPG_0128   cibB FALSE 0.013 818.000 0.000 NA   NA
 5755397 5755398 SPG_0128 SPG_0129 cibB cibA TRUE 0.990 2.000 0.500 NA   NA
 5755399 5755400 SPG_0130 SPG_0131     TRUE 0.987 -3.000 0.209 1.000   NA
 5755400 5755401 SPG_0131 SPG_0132     TRUE 0.965 -10.000 0.030 1.000   NA
 5755402 5755403 SPG_0133 SPG_0134     TRUE 0.903 -9.000 0.000 NA   NA
 5755404 5755405 SPG_0135 SPG_0136     TRUE 0.875 -22.000 0.000 NA   NA
 5755405 5755406 SPG_0136 SPG_0137     TRUE 0.908 -7.000 0.000 NA   NA
 5755406 5755407 SPG_0137 SPG_0138     FALSE 0.172 87.000 0.000 NA   NA
 5755407 5755408 SPG_0138 SPG_0139     FALSE 0.017 654.000 0.000 1.000   NA
 5755408 5755409 SPG_0139 SPG_0140     FALSE 0.269 145.000 0.000 0.018   NA
 5755409 5755410 SPG_0140 SPG_0141     FALSE 0.021 407.000 0.000 NA   NA
 5755410 5755411 SPG_0141 SPG_0142     TRUE 0.813 13.000 0.000 NA   NA
 5755411 5755412 SPG_0142 SPG_0143     FALSE 0.025 395.000 0.000 1.000   NA
 5755412 5755413 SPG_0143 SPG_0144     FALSE 0.032 291.000 0.000 NA   NA
 5755413 5755414 SPG_0144 SPG_0145     TRUE 0.751 22.000 0.000 NA   NA
 5755414 5755415 SPG_0145 SPG_0146     TRUE 0.821 12.000 0.000 NA   NA
 5755415 5755416 SPG_0146 SPG_0147     TRUE 0.308 72.000 0.000 NA   NA
 5755416 5755417 SPG_0147 SPG_0148     FALSE 0.042 250.000 0.000 NA   NA
 5755417 5755418 SPG_0148 SPG_0149     TRUE 0.988 -10.000 0.338 NA   NA
 5755418 5755419 SPG_0149 SPG_0150     FALSE 0.201 104.000 0.013 NA   NA
 5755419 5755420 SPG_0150 SPG_0151     FALSE 0.066 154.000 0.000 NA N NA
 5755420 5755421 SPG_0151 SPG_0152     TRUE 0.602 100.000 0.500 NA N NA
 5755421 5755422 SPG_0152 SPG_0153     TRUE 0.970 -7.000 0.042 1.000 N NA
 5755422 5755423 SPG_0153 SPG_0154     TRUE 0.998 2.000 0.938 1.000 Y NA
 5755425 5755426 SPG_0156 SPG_0157     TRUE 0.950 50.000 0.667 NA   NA
 5755426 5755427 SPG_0157 SPG_0158     TRUE 0.996 12.000 0.227 0.014 Y NA
 5755427 5755428 SPG_0158 SPG_0159     TRUE 0.842 52.000 0.091 NA   NA
 5755428 5755429 SPG_0159 SPG_0160     TRUE 0.724 78.000 0.286 NA   NA
 5755430 5755431 SPG_0161 SPG_0162     FALSE 0.029 310.000 0.000 NA   NA
 5755431 5755432 SPG_0162 SPG_0163     TRUE 0.991 -3.000 0.392 NA   NA
 5755433 5755434 SPG_0164 SPG_0165   hexB TRUE 0.444 61.000 0.000 NA   NA
 5755435 5755436 SPG_0166 SPG_0167     TRUE 0.997 1.000 0.054 0.003 Y NA
 5755436 5755437 SPG_0167 SPG_0168     TRUE 0.973 20.000 0.051 1.000 Y NA
 5755437 5755438 SPG_0168 SPG_0169     TRUE 0.996 -15.000 0.456 1.000 Y NA
 5755439 5755440 SPG_0170 SPG_0171 ruvA tag TRUE 0.975 10.000 0.012 1.000 Y NA
 5755440 5755441 SPG_0171 SPG_0172 tag   TRUE 0.946 -3.000 0.004 NA   NA
 5755442 5755443 SPG_0173 SPG_0174     FALSE 0.040 255.000 0.000 NA   NA
 5755443 5755444 SPG_0174 SPG_0175     TRUE 0.948 12.000 0.072 NA   NA
 5755445 5755446 SPG_0176 SPG_0177 uvrA   TRUE 0.953 -7.000 0.008 1.000 N NA
 5755446 5755447 SPG_0177 SPG_0178     FALSE 0.087 132.000 0.000 1.000 N NA
 5755447 5755448 SPG_0178 SPG_0179     TRUE 0.838 66.000 0.267 NA   NA
 5755448 5755449 SPG_0179 SPG_0180     TRUE 0.323 87.000 0.016 NA   NA
 5755449 5755450 SPG_0180 SPG_0181     TRUE 0.989 4.000 0.537 NA   NA
 5755450 5755451 SPG_0181 SPG_0182     TRUE 0.982 16.000 0.651 NA   NA
 5755453 5755454 SPG_0184 SPG_0185     TRUE 0.986 -3.000 0.200 NA   NA
 5755454 5755455 SPG_0185 SPG_0186   cls FALSE 0.071 146.000 0.000 NA   NA
 5755455 5755456 SPG_0186 SPG_0187 cls   FALSE 0.240 78.000 0.000 NA   NA
 5755456 5755457 SPG_0187 SPG_0188     TRUE 0.896 37.000 0.095 NA   NA
 5755457 5755458 SPG_0188 SPG_0189   nrdD FALSE 0.258 120.000 0.057 NA   NA
 5755458 5755459 SPG_0189 SPG_0190 nrdD   TRUE 0.945 12.000 0.062 NA   NA
 5755459 5755460 SPG_0190 SPG_0191     TRUE 0.928 44.000 0.292 NA   NA
 5755460 5755461 SPG_0191 SPG_0192   nrdG TRUE 0.984 -7.000 0.159 1.000   NA
 5755461 5755462 SPG_0192 SPG_0193 nrdG   TRUE 0.969 -3.000 0.029 1.000 N NA
 5755462 5755463 SPG_0193 SPG_0194   rpsJ FALSE 0.041 266.000 0.000 1.000 N NA
 5755463 5755464 SPG_0194 SPG_0195 rpsJ rplC TRUE 0.784 216.000 0.467 0.035 Y NA
 5755464 5755465 SPG_0195 SPG_0196 rplC rplD TRUE 0.995 25.000 0.544 0.026 Y NA
 5755465 5755466 SPG_0196 SPG_0197 rplD rplW TRUE 0.998 0.000 0.307 0.026 Y NA
 5755466 5755467 SPG_0197 SPG_0198 rplW rplB TRUE 0.997 18.000 0.849 0.034 Y NA
 5755467 5755468 SPG_0198 SPG_0199 rplB rpsS TRUE 0.925 104.000 0.820 0.035 Y NA
 5755468 5755469 SPG_0199 SPG_0200 rpsS rplV TRUE 0.998 12.000 0.769 0.035 Y NA
 5755469 5755470 SPG_0200 SPG_0201 rplV rpsC TRUE 0.998 13.000 0.719 0.035 Y NA
 5755470 5755471 SPG_0201 SPG_0202 rpsC rplP TRUE 0.999 4.000 0.828 0.035 Y NA
 5755471 5755472 SPG_0202 SPG_0203 rplP rpmC TRUE 0.998 10.000 0.802 0.026 Y NA
 5755472 5755473 SPG_0203 SPG_0204 rpmC rpsQ TRUE 0.997 25.000 0.828 0.026 Y NA
 5755473 5755474 SPG_0204 SPG_0205 rpsQ rplN TRUE 0.996 26.000 0.791 0.035 Y NA
 5755474 5755475 SPG_0205 SPG_0206 rplN rplX TRUE 0.970 78.000 0.810 0.035 Y NA
 5755475 5755476 SPG_0206 SPG_0207 rplX rplE TRUE 0.997 24.000 0.758 0.026 Y NA
 5755476 5755477 SPG_0207 SPG_0208 rplE rpsN TRUE 0.995 18.000 0.309 0.026 Y NA
 5755477 5755478 SPG_0208 SPG_0209 rpsN rpsH TRUE 0.665 285.000 0.295 0.026 Y NA
 5755478 5755479 SPG_0209 SPG_0210 rpsH rplF TRUE 0.867 192.000 0.808 0.026 Y NA
 5755479 5755480 SPG_0210 SPG_0211 rplF rplR TRUE 0.964 84.000 0.815 0.026 Y NA
 5755480 5755481 SPG_0211 SPG_0212 rplR rpsE TRUE 0.997 18.000 0.814 0.035 Y NA
 5755481 5755482 SPG_0212 SPG_0213 rpsE rpmD TRUE 0.998 14.000 0.789 0.035 Y NA
 5755482 5755483 SPG_0213 SPG_0214 rpmD rplO TRUE 0.901 145.000 0.653 0.005 Y NA
 5755483 5755484 SPG_0214 SPG_0215 rplO secY TRUE 0.986 13.000 0.730 1.000 N NA
 5755484 5755485 SPG_0215 SPG_0216 secY adk TRUE 0.373 151.000 0.241 1.000 N NA
 5755485 5755486 SPG_0216 SPG_0217 adk infA FALSE 0.282 117.000 0.059 1.000 N NA
 5755486 5755487 SPG_0217 SPG_0218 infA rpsM TRUE 0.597 220.000 0.075 0.034 Y NA
 5755487 5755488 SPG_0218 SPG_0219 rpsM rpsK TRUE 0.997 18.000 0.810 0.026 Y NA
 5755488 5755489 SPG_0219 SPG_0220 rpsK rpoA TRUE 0.936 43.000 0.308 1.000 N NA
 5755489 5755490 SPG_0220 SPG_0221 rpoA rplQ TRUE 0.989 12.000 0.873 1.000 N NA
 5755490 5755491 SPG_0221 SPG_0222 rplQ   FALSE 0.059 265.000 0.002 1.000 N NA
 5755491 5755492 SPG_0222 SPG_0223     TRUE 0.985 10.000 0.569 NA   NA
 5755492 5755493 SPG_0223 SPG_0224     FALSE 0.080 244.000 0.008 NA   NA
 5755494 5755495 SPG_0225 SPG_0226 pitA1 pitA2 TRUE 0.974 -3.000 0.000 0.052   NA
 5755495 5755496 SPG_0226 SPG_0227 pitA2 pitD TRUE 0.899 27.000 0.000 0.052   NA
 5755496 5755497 SPG_0227 SPG_0228 pitD pitB FALSE 0.137 248.000 0.000 0.052   NA
 5755497 5755498 SPG_0228 SPG_0229 pitB   TRUE 0.939 13.000 0.000 0.052   NA
 5755498 5755499 SPG_0229 SPG_0230     FALSE 0.216 145.000 0.000 0.052   NA
 5755499 5755500 SPG_0230 SPG_0231     FALSE 0.056 217.000 0.000 1.000   NA
 5755500 5755501 SPG_0231 SPG_0232     TRUE 0.314 75.000 0.000 1.000   NA
 5755502 5755503 SPG_0233 SPG_0234     TRUE 0.994 13.000 0.188 0.040 Y NA
 5755503 5755504 SPG_0234 SPG_0235     FALSE 0.218 195.000 0.091 1.000 N NA
 5755504 5755505 SPG_0235 SPG_0236     TRUE 0.994 46.000 0.889 0.024 Y NA
 5755505 5755506 SPG_0236 SPG_0237     TRUE 0.998 17.000 0.889 0.024 Y NA
 5755506 5755507 SPG_0237 SPG_0238     TRUE 0.295 151.000 0.132 1.000 N NA
 5755507 5755508 SPG_0238 SPG_0239     TRUE 0.973 19.000 0.368 1.000 N NA
 5755508 5755509 SPG_0239 SPG_0240     TRUE 0.963 18.000 0.211 1.000 N NA
 5755509 5755510 SPG_0240 SPG_0241   leuS FALSE 0.020 455.000 0.000 1.000 N NA
 5755510 5755511 SPG_0241 SPG_0242 leuS   FALSE 0.214 194.000 0.000 1.000 Y NA
 5755511 5755512 SPG_0242 SPG_0243     TRUE 0.980 12.000 0.037 0.013   NA
 5755512 5755513 SPG_0243 SPG_0244   ruvB FALSE 0.014 1041.000 0.000 1.000   NA
 5755513 5755514 SPG_0244 SPG_0245 ruvB   TRUE 0.924 -19.000 0.004 NA   NA
 5755514 5755515 SPG_0245 SPG_0246     FALSE 0.045 231.000 0.000 NA   NA
 5755515 5755516 SPG_0246 SPG_0247   cdsA TRUE 0.988 9.000 0.113 1.000 Y NA
 5755516 5755517 SPG_0247 SPG_0248 cdsA   TRUE 0.908 22.000 0.040 1.000 N NA
 5755517 5755518 SPG_0248 SPG_0249   proS TRUE 0.954 13.000 0.095 1.000 N NA
 5755518 5755519 SPG_0249 SPG_0250 proS   FALSE 0.186 99.000 0.002 1.000 N NA
 5755519 5755520 SPG_0250 SPG_0251   glmS FALSE 0.097 193.000 0.003 1.000 N NA
 5755520 5755521 SPG_0251 SPG_0252 glmS   FALSE 0.086 119.000 0.000 NA N NA
 5755523 5755524 SPG_0254 SPG_0255 rpsL rpsG TRUE 0.995 20.000 0.224 0.005 Y NA
 5755524 5755525 SPG_0255 SPG_0256 rpsG   TRUE 0.415 425.000 0.579 1.000 Y NA
 5755525 5755526 SPG_0256 SPG_0257     FALSE 0.171 104.000 0.003 1.000 N NA
 5755526 5755527 SPG_0257 SPG_0258     TRUE 0.340 102.000 0.000 NA Y NA
 5755527 5755528 SPG_0258 SPG_0259     TRUE 0.990 -7.000 0.400 NA   NA
 5755528 5755529 SPG_0259 SPG_0260     TRUE 0.761 21.000 0.000 NA   NA
 5755529 5755530 SPG_0260 SPG_0261     TRUE 0.931 22.000 0.095 NA   NA
 5755530 5755531 SPG_0261 SPG_0262     TRUE 0.973 10.000 0.190 1.000   NA
 5755531 5755532 SPG_0262 SPG_0263     FALSE 0.033 313.000 0.000 1.000   NA
 5755532 5755533 SPG_0263 SPG_0264     FALSE 0.144 217.000 0.041 1.000 N NA
 5755534 5755535 SPG_0265 SPG_0266     TRUE 0.997 24.000 0.812 0.035 Y NA
 5755535 5755536 SPG_0266 SPG_0267     TRUE 0.997 28.000 0.943 0.035 Y NA
 5755536 5755537 SPG_0267 SPG_0268   adhP FALSE 0.051 234.000 0.000 1.000   NA
 5755537 5755538 SPG_0268 SPG_0269 adhP   FALSE 0.099 109.000 0.000 NA   NA
 5755538 5755539 SPG_0269 SPG_0270     FALSE 0.196 84.000 0.000 NA   NA
 5755539 5755540 SPG_0270 SPG_0271     TRUE 0.652 95.000 0.111 0.056   NA
 5755541 5755542 SPG_0272 SPG_0273     TRUE 0.767 53.000 0.034 NA   NA
 5755542 5755543 SPG_0273 SPG_0274   sulA FALSE 0.138 95.000 0.000 NA   NA
 5755543 5755544 SPG_0274 SPG_0275 sulA sulB TRUE 0.995 2.000 0.006 0.005 Y NA
 5755544 5755545 SPG_0275 SPG_0276 sulB sulC TRUE 0.984 -19.000 0.024 1.000 Y NA
 5755545 5755546 SPG_0276 SPG_0277 sulC sulD TRUE 0.913 43.000 0.005 1.000 Y NA
 5755548 5755549 SPG_0279 SPG_0280 rplM rpsI TRUE 0.997 19.000 0.601 0.026 Y NA
 5755551 5755552 SPG_0282 SPG_0283     FALSE 0.021 401.000 0.000 NA   NA
 5755554 5755555 SPG_0285 SPG_0286 hyl   FALSE 0.018 616.000 0.000 1.000   NA
 5755556 5755557 SPG_0287 SPG_0288 eda   TRUE 0.989 10.000 0.167 1.000 Y NA
 5755557 5755558 SPG_0288 SPG_0289     TRUE 0.969 31.000 0.094 1.000 Y NA
 5755558 5755559 SPG_0289 SPG_0290     TRUE 0.960 19.000 0.197 1.000 N NA
 5755560 5755561 SPG_0291 SPG_0292     TRUE 0.967 12.000 0.160 1.000   NA
 5755561 5755562 SPG_0292 SPG_0293     TRUE 0.977 11.000 0.267 1.000   NA
 5755562 5755563 SPG_0293 SPG_0294     TRUE 0.998 15.000 0.933 0.034 Y NA
 5755563 5755564 SPG_0294 SPG_0295     TRUE 0.999 -13.000 0.933 0.034 Y NA
 5755564 5755565 SPG_0295 SPG_0296     TRUE 0.938 0.000 0.002 NA N NA
 5755565 5755566 SPG_0296 SPG_0297     TRUE 0.844 22.000 0.006 NA   NA
 5755566 5755567 SPG_0297 SPG_0298   regR TRUE 0.913 60.000 0.562 NA   NA
 5755568 5755569 SPG_0299 SPG_0300     TRUE 0.829 11.000 0.000 NA   NA
 5755569 5755570 SPG_0300 SPG_0301     TRUE 0.829 11.000 0.000 NA   NA
 5755570 5755571 SPG_0301 SPG_0302     TRUE 0.948 16.000 0.105 NA   NA
 5755572 5755573 SPG_0303 SPG_0304 mraW   TRUE 0.952 12.000 0.077 1.000 N NA
 5755573 5755574 SPG_0304 SPG_0305   pbp2X TRUE 0.988 4.000 0.456 1.000 N NA
 5755574 5755575 SPG_0305 SPG_0306 pbp2X   TRUE 0.988 2.000 0.038 1.000 Y NA
 5755575 5755576 SPG_0306 SPG_0307     FALSE 0.051 212.000 0.000 NA   NA
 5755576 5755577 SPG_0307 SPG_0308     FALSE 0.034 281.000 0.000 NA   NA
 5755578 5755579 SPG_0309 SPG_0310 luxS   FALSE 0.227 95.000 0.006 NA   NA
 5755580 5755581 SPG_0311 SPG_0312 dexB   FALSE 0.067 159.000 0.000 NA   NA
 5755581 5755582 SPG_0312 SPG_0313     FALSE 0.047 223.000 0.000 NA   NA
 5755582 5755583 SPG_0313 SPG_0314   cpsA FALSE 0.022 392.000 0.000 NA   NA
 5755583 5755584 SPG_0314 SPG_0315 cpsA cpsB TRUE 0.992 2.000 0.583 1.000 N NA
 5755584 5755585 SPG_0315 SPG_0316 cpsB cpsC TRUE 0.995 9.000 0.636 1.000 Y NA
 5755585 5755586 SPG_0316 SPG_0317 cpsC cpsD TRUE 0.989 10.000 0.800 1.000 N NA
 5755586 5755587 SPG_0317 SPG_0318 cpsD cpsE TRUE 0.936 16.000 0.067 NA N NA
 5755587 5755588 SPG_0318 SPG_0319 cpsE cpsF TRUE 0.984 4.000 0.032 NA Y NA
 5755588 5755589 SPG_0319 SPG_0320 cpsF cpsG TRUE 0.978 -3.000 0.000 NA Y NA
 5755589 5755590 SPG_0320 SPG_0321 cpsG cpsH TRUE 0.898 2.000 0.000 NA   NA
 5755590 5755591 SPG_0321 SPG_0322 cpsH cpsI TRUE 0.906 1.000 0.000 NA   NA
 5755591 5755592 SPG_0322 SPG_0323 cpsI cpsJ TRUE 0.943 23.000 0.154 NA   NA
 5755592 5755593 SPG_0323 SPG_0324 cpsJ cpsK TRUE 0.807 64.000 0.154 NA   NA
 5755593 5755594 SPG_0324 SPG_0325 cpsK cpsL TRUE 0.891 39.000 0.000 1.000 Y NA
 5755594 5755595 SPG_0325 SPG_0326 cpsL cpsM TRUE 0.994 1.000 0.149 1.000 Y NA
 5755595 5755596 SPG_0326 SPG_0327 cpsM cpsN TRUE 0.993 10.000 0.350 1.000 Y NA
 5755596 5755597 SPG_0327 SPG_0328 cpsN cpsO TRUE 0.979 66.000 0.273 0.004 Y NA
 5755597 5755598 SPG_0328 SPG_0329 cpsO   TRUE 0.427 63.000 0.000 NA   NA
 5755598 5755599 SPG_0329 SPG_0330     FALSE 0.029 310.000 0.000 NA   NA
 5755599 5755600 SPG_0330 SPG_0331     TRUE 0.320 71.000 0.000 NA   NA
 5755600 5755601 SPG_0331 SPG_0332   aliA FALSE 0.056 199.000 0.000 NA   NA
 5755601 5755602 SPG_0332 SPG_0333 aliA   FALSE 0.035 301.000 0.000 1.000   NA
 5755603 5755604 SPG_0334 SPG_0335   recU TRUE 0.990 -3.000 0.319 1.000   NA
 5755605 5755606 SPG_0336 SPG_0337     TRUE 0.868 70.000 0.579 NA   NA
 5755608 5755609 SPG_0339 SPG_0340     TRUE 0.922 13.000 0.029 NA   NA
 5755609 5755610 SPG_0340 SPG_0341   gnd TRUE 0.391 76.000 0.005 NA   NA
 5755610 5755611 SPG_0341 SPG_0342 gnd ritR TRUE 0.911 12.000 0.012 1.000 N NA
 5755611 5755612 SPG_0342 SPG_0343 ritR cbpC FALSE 0.124 98.000 0.000 NA   NA
 5755614 5755615 SPG_0345 SPG_0346   mvaK1 FALSE 0.087 122.000 0.000 NA   NA
 5755615 5755616 SPG_0346 SPG_0347 mvaK1 mvaD TRUE 0.998 -18.000 0.281 0.005 Y NA
 5755616 5755617 SPG_0347 SPG_0348 mvaD mvaK2 TRUE 0.998 -13.000 0.312 0.005 Y NA
 5755617 5755618 SPG_0348 SPG_0349 mvaK2   TRUE 0.974 -16.000 0.097 1.000 N NA
 5755618 5755619 SPG_0349 SPG_0350     TRUE 0.358 78.000 0.005 NA   NA
 5755619 5755620 SPG_0350 SPG_0351     TRUE 0.994 -3.000 0.679 NA   NA
 5755620 5755621 SPG_0351 SPG_0352     TRUE 0.998 14.000 0.853 0.013 Y NA
 5755621 5755622 SPG_0352 SPG_0353     FALSE 0.050 214.000 0.000 NA   NA
 5755622 5755623 SPG_0353 SPG_0354     TRUE 0.729 55.000 0.024 NA   NA
 5755623 5755624 SPG_0354 SPG_0355     FALSE 0.070 150.000 0.000 NA   NA
 5755624 5755625 SPG_0355 SPG_0356   cbpG FALSE 0.218 81.000 0.000 NA   NA
 5755625 5755626 SPG_0356 SPG_0357 cbpG   TRUE 0.777 19.000 0.000 NA   NA
 5755626 5755627 SPG_0357 SPG_0358     FALSE 0.090 118.000 0.000 NA   NA
 5755628 5755629 SPG_0359 SPG_0360     TRUE 0.898 -16.000 0.000 1.000   NA
 5755629 5755630 SPG_0360 SPG_0361     FALSE 0.136 222.000 0.000 0.080   NA
 5755631 5755632 SPG_0362 SPG_0363     TRUE 0.986 24.000 0.336 0.024 N NA
 5755632 5755633 SPG_0363 SPG_0364     TRUE 0.993 2.000 0.131 0.024 N NA
 5755633 5755634 SPG_0364 SPG_0365     TRUE 0.901 62.000 0.062 1.000 Y NA
 5755634 5755635 SPG_0365 SPG_0366     FALSE 0.023 369.000 0.000 NA   NA
 5755635 5755636 SPG_0366 SPG_0367   tig FALSE 0.030 304.000 0.000 NA   NA
 5755637 5755638 SPG_0368 SPG_0369     FALSE 0.149 279.000 0.099 1.000 N NA
 5755638 5755639 SPG_0369 SPG_0370   rnhC TRUE 0.969 4.000 0.080 1.000 N NA
 5755640 5755641 SPG_0371 SPG_0372   cvpA TRUE 0.962 -3.000 0.019 NA   NA
 5755641 5755642 SPG_0372 SPG_0373 cvpA   TRUE 0.338 104.000 0.070 1.000   NA
 5755642 5755643 SPG_0373 SPG_0374     FALSE 0.029 342.000 0.000 1.000 N NA
 5755643 5755644 SPG_0374 SPG_0375     FALSE 0.048 218.000 0.000 NA   NA
 5755644 5755645 SPG_0375 SPG_0376     FALSE 0.098 110.000 0.000 NA   NA
 5755646 5755647 SPG_0377 SPG_0378 serS   FALSE 0.076 214.000 0.003 NA   NA
 5755647 5755648 SPG_0378 SPG_0379     TRUE 0.939 3.000 0.010 NA   NA
 5755648 5755649 SPG_0379 SPG_0380     FALSE 0.196 84.000 0.000 NA   NA
 5755650 5755651 SPG_0381 SPG_0382 fabM fabT TRUE 0.697 71.000 0.098 1.000 N NA
 5755651 5755652 SPG_0382 SPG_0383 fabT fabH TRUE 0.977 0.000 0.070 1.000 N NA
 5755652 5755653 SPG_0383 SPG_0384 fabH acpP TRUE 0.921 60.000 0.065 0.008   NA
 5755653 5755654 SPG_0384 SPG_0385 acpP fabK TRUE 0.424 119.000 0.216 1.000   NA
 5755654 5755655 SPG_0385 SPG_0386 fabK fabD TRUE 0.980 -7.000 0.099 1.000   NA
 5755655 5755656 SPG_0386 SPG_0387 fabD fabG TRUE 0.994 34.000 0.432 0.008 Y NA
 5755656 5755657 SPG_0387 SPG_0388 fabG fabF TRUE 0.971 22.000 0.056 1.000 Y NA
 5755657 5755658 SPG_0388 SPG_0389 fabF accB TRUE 0.989 3.000 0.074 1.000 Y NA
 5755658 5755659 SPG_0389 SPG_0390 accB fabZ TRUE 0.997 -3.000 0.047 0.008 Y NA
 5755659 5755660 SPG_0390 SPG_0391 fabZ accC TRUE 0.979 12.000 0.045 1.000 Y NA
 5755660 5755661 SPG_0391 SPG_0392 accC accD TRUE 0.962 37.000 0.090 1.000 Y NA
 5755661 5755662 SPG_0392 SPG_0393 accD accA TRUE 0.999 -3.000 0.234 0.002 Y NA
 5755662 5755663 SPG_0393 SPG_0394 accA   FALSE 0.102 159.000 0.003 NA   NA
 5755663 5755664 SPG_0394 SPG_0395     TRUE 0.951 57.000 1.000 NA   NA
 5755665 5755666 SPG_0396 SPG_0397 nusB   TRUE 0.987 -7.000 0.265 NA   NA
 5755666 5755667 SPG_0397 SPG_0398     TRUE 0.895 22.000 0.031 NA   NA
 5755667 5755668 SPG_0398 SPG_0399   gatB TRUE 0.286 129.000 0.000 1.000 Y NA
 5755668 5755669 SPG_0399 SPG_0400 gatB gatA TRUE 0.999 0.000 0.492 0.002 Y NA
 5755669 5755670 SPG_0400 SPG_0401 gatA gatC TRUE 0.999 0.000 0.643 0.002 Y NA
 5755671 5755672 SPG_0402 SPG_0403 prfC rpmB FALSE 0.059 716.000 0.000 1.000 Y NA
 5755672 5755673 SPG_0403 SPG_0404 rpmB   FALSE 0.187 157.000 0.044 NA   NA
 5755673 5755674 SPG_0404 SPG_0405     TRUE 0.990 3.000 0.567 NA   NA
 5755676 5755677 SPG_0407 SPG_0408     TRUE 0.999 -7.000 0.249 0.001 Y NA
 5755677 5755678 SPG_0408 SPG_0409     TRUE 0.971 66.000 0.130 0.003 Y NA
 5755678 5755679 SPG_0409 SPG_0410     FALSE 0.101 107.000 0.000 NA   NA
 5755679 5755680 SPG_0410 SPG_0411     FALSE 0.044 238.000 0.000 NA   NA
 5755680 5755681 SPG_0411 SPG_0412     TRUE 0.572 50.000 0.000 NA   NA
 5755681 5755682 SPG_0412 SPG_0413     FALSE 0.073 142.000 0.000 NA   NA
 5755682 5755683 SPG_0413 SPG_0414     FALSE 0.017 541.000 0.000 NA   NA
 5755684 5755685 SPG_0415 SPG_0416     TRUE 0.998 0.000 0.758 1.000 Y NA
 5755687 5755688 SPG_0417 SPG_0419     TRUE 0.686 32.000 0.000 NA   NA
 5755689 5755690 SPG_0420 SPG_0421   bacA TRUE 0.695 31.000 0.000 NA   NA
 5755690 5755691 SPG_0421 SPG_0422 bacA   TRUE 0.908 -7.000 0.000 NA   NA
 5755694 5755695 SPG_0425 SPG_0426     FALSE 0.027 327.000 0.000 NA   NA
 5755698 5755699 SPG_0429 SPG_0430     TRUE 0.986 2.000 0.250 NA   NA
 5755699 5755700 SPG_0430 SPG_0431     TRUE 0.533 53.000 0.000 NA   NA
 5755700 5755701 SPG_0431 SPG_0432     FALSE 0.064 168.000 0.000 NA   NA
 5755701 5755702 SPG_0432 SPG_0433     TRUE 0.960 10.000 0.000 1.000 Y NA
 5755702 5755703 SPG_0433 SPG_0434     TRUE 0.704 69.000 0.000 1.000 Y NA
 5755704 5755705 SPG_0435 SPG_0436     TRUE 0.995 4.000 0.017 0.005 Y NA
 5755706 5755707 SPG_0437 SPG_0438     TRUE 0.939 15.000 0.068 NA   NA
 5755707 5755708 SPG_0438 SPG_0439     FALSE 0.230 321.000 0.435 NA   NA
 5755708 5755709 SPG_0439 SPG_0440     TRUE 0.991 -15.000 0.530 1.000   NA
 5755709 5755710 SPG_0440 SPG_0441     FALSE 0.101 193.000 0.005 1.000 N NA
 5755710 5755711 SPG_0441 SPG_0442     FALSE 0.019 453.000 0.000 NA   NA
 5755711 5755712 SPG_0442 SPG_0443     TRUE 0.992 -10.000 0.600 NA   NA
 5755712 5755713 SPG_0443 SPG_0444     TRUE 0.927 28.000 0.105 1.000   NA
 5755713 5755714 SPG_0444 SPG_0445     TRUE 0.883 5.000 0.000 1.000   NA
 5755714 5755715 SPG_0445 SPG_0446   rpoE FALSE 0.090 128.000 0.000 1.000 N NA
 5755719 5755720 SPG_0450 SPG_0451     TRUE 0.376 67.000 0.000 NA   NA
 5755720 5755721 SPG_0451 SPG_0452   pgk FALSE 0.240 90.000 0.002 1.000   NA
 5755722 5755723 SPG_0453 SPG_0454     TRUE 0.871 -25.000 0.000 NA   NA
 5755723 5755724 SPG_0454 SPG_0455     TRUE 0.869 -28.000 0.000 NA   NA
 5755725 5755726 SPG_0456 SPG_0457   glnR TRUE 0.669 77.000 0.154 NA   NA
 5755726 5755727 SPG_0457 SPG_0458 glnR glnA TRUE 0.926 37.000 0.179 1.000 N NA
 5755727 5755728 SPG_0458 SPG_0459 glnA   FALSE 0.060 180.000 0.000 NA   NA
 5755728 5755729 SPG_0459 SPG_0460     FALSE 0.019 453.000 0.000 NA   NA
 5755730 5755731 SPG_0461 SPG_0462     TRUE 0.995 0.000 0.045 0.079 Y NA
 5755731 5755732 SPG_0462 SPG_0463     TRUE 0.997 13.000 0.564 0.079 Y NA
 5755732 5755733 SPG_0463 SPG_0464     FALSE 0.025 350.000 0.000 NA   NA
 5755734 5755735 SPG_0465 SPG_0466   hrcA FALSE 0.100 164.000 0.003 NA   NA
 5755735 5755736 SPG_0466 SPG_0467 hrcA grpE TRUE 0.900 27.000 0.051 1.000 N NA
 5755736 5755737 SPG_0467 SPG_0468 grpE dnaK TRUE 0.337 480.000 0.026 0.006 Y NA
 5755737 5755738 SPG_0468 SPG_0469 dnaK dnaJ TRUE 0.481 630.000 0.196 0.003 Y NA
 5755739 5755740 SPG_0470 SPG_0471     TRUE 0.952 10.000 0.063 NA   NA
 5755741 5755742 SPG_0472 SPG_0473     TRUE 0.984 -3.000 0.167 NA N NA
 5755744 5755745 SPG_0475 SPG_0476 blpS blpR TRUE 0.987 5.000 0.500 NA   NA
 5755745 5755746 SPG_0476 SPG_0477 blpR blpH TRUE 0.991 14.000 0.444 NA Y NA
 5755747 5755748 SPG_0478 SPG_0479 blpC blpB TRUE 0.891 57.000 0.250 1.000   NA
 5755748 5755749 SPG_0479 SPG_0480 blpB blpA TRUE 0.990 11.000 0.375 0.068   NA
 5755750 5755751 SPG_0481 SPG_0482 blpPQ   FALSE 0.027 318.000 0.000 NA   NA
 5755751 5755752 SPG_0482 SPG_0483     FALSE 0.016 574.000 0.000 NA   NA
 5755752 5755753 SPG_0483 SPG_0484     FALSE 0.031 296.000 0.000 NA   NA
 5755753 5755754 SPG_0484 SPG_0485     FALSE 0.167 88.000 0.000 NA   NA
 5755754 5755755 SPG_0485 SPG_0486   blpM FALSE 0.070 150.000 0.000 NA   NA
 5755755 5755756 SPG_0486 SPG_0487 blpM blpN TRUE 0.975 16.000 0.400 NA   NA
 5755756 5755757 SPG_0487 SPG_0488 blpN   TRUE 0.973 19.000 0.400 NA   NA
 5755757 5755758 SPG_0488 SPG_0489   blpO TRUE 0.792 16.000 0.000 NA   NA
 5755758 5755759 SPG_0489 SPG_0490 blpO   TRUE 0.881 -18.000 0.000 NA   NA
 5755759 5755760 SPG_0490 SPG_0491     TRUE 0.883 3.000 0.000 NA   NA
 5755760 5755761 SPG_0491 SPG_0492   blpX FALSE 0.013 786.000 0.000 NA   NA
 5755761 5755762 SPG_0492 SPG_0493 blpX   TRUE 0.547 52.000 0.000 NA   NA
 5755762 5755763 SPG_0493 SPG_0494   blpZ TRUE 0.628 42.000 0.000 NA   NA
 5755763 5755764 SPG_0494 SPG_0495 blpZ   TRUE 0.701 30.000 0.000 NA   NA
 5755764 5755765 SPG_0495 SPG_0496     FALSE 0.066 161.000 0.000 NA   NA
 5755765 5755766 SPG_0496 SPG_0497   trmB TRUE 0.984 -3.000 0.154 NA   NA
 5755766 5755767 SPG_0497 SPG_0498 trmB   FALSE 0.134 126.000 0.004 NA   NA
 5755767 5755768 SPG_0498 SPG_0499   nusA TRUE 0.960 44.000 0.759 NA   NA
 5755768 5755769 SPG_0499 SPG_0500 nusA   TRUE 0.986 22.000 0.323 NA Y NA
 5755769 5755770 SPG_0500 SPG_0501     TRUE 0.990 -7.000 0.408 NA N NA
 5755770 5755771 SPG_0501 SPG_0502     TRUE 0.986 17.000 0.223 NA Y NA
 5755771 5755772 SPG_0502 SPG_0503     TRUE 0.593 251.000 0.530 1.000 Y NA
 5755772 5755773 SPG_0503 SPG_0504     FALSE 0.037 288.000 0.000 1.000   NA
 5755773 5755774 SPG_0504 SPG_0505     FALSE 0.025 353.000 0.000 NA   NA
 5755774 5755775 SPG_0505 SPG_0506     TRUE 0.320 71.000 0.000 NA   NA
 5755775 5755776 SPG_0506 SPG_0507     TRUE 0.914 -3.000 0.000 NA   NA
 5755776 5755777 SPG_0507 SPG_0508     FALSE 0.028 313.000 0.000 NA   NA
 5755777 5755778 SPG_0508 SPG_0509     TRUE 0.987 0.000 0.229 NA   NA
 5755778 5755779 SPG_0509 SPG_0510     TRUE 0.963 10.000 0.114 NA   NA
 5755779 5755780 SPG_0510 SPG_0511     TRUE 0.453 96.000 0.143 NA   NA
 5755780 5755781 SPG_0511 SPG_0512     TRUE 0.452 60.000 0.000 NA   NA
 5755781 5755782 SPG_0512 SPG_0513     FALSE 0.019 544.000 0.000 1.000   NA
 5755782 5755783 SPG_0513 SPG_0514     TRUE 0.981 -13.000 0.150 1.000   NA
 5755783 5755784 SPG_0514 SPG_0515     TRUE 0.973 0.000 0.053 NA   NA
 5755784 5755785 SPG_0515 SPG_0516   valS TRUE 0.950 -7.000 0.008 NA   NA
 5755785 5755786 SPG_0516 SPG_0517 valS   TRUE 0.334 70.000 0.000 NA   NA
 5755786 5755787 SPG_0517 SPG_0518     FALSE 0.120 99.000 0.000 NA   NA
 5755787 5755788 SPG_0518 SPG_0519     FALSE 0.035 279.000 0.000 NA   NA
 5755789 5755790 SPG_0520 SPG_0521     FALSE 0.035 278.000 0.000 NA   NA
 5755790 5755791 SPG_0521 SPG_0522     TRUE 0.911 0.000 0.000 NA   NA
 5755791 5755792 SPG_0522 SPG_0523     FALSE 0.077 137.000 0.000 NA   NA
 5755793 5755794 SPG_0524 SPG_0525 licT   TRUE 0.969 18.000 0.259 1.000   NA
 5755794 5755795 SPG_0525 SPG_0526     TRUE 0.991 13.000 0.318 1.000 Y NA
 5755795 5755796 SPG_0526 SPG_0527   pheS FALSE 0.018 550.000 0.000 1.000 N NA
 5755796 5755797 SPG_0527 SPG_0528 pheS   TRUE 0.957 0.000 0.009 1.000   NA
 5755797 5755798 SPG_0528 SPG_0529   pheT TRUE 0.423 77.000 0.007 1.000   NA
 5755800 5755801 SPG_0531 SPG_0532     TRUE 0.427 63.000 0.000 NA   NA
 5755801 5755802 SPG_0532 SPG_0533     FALSE 0.087 122.000 0.000 NA   NA
 5755802 5755803 SPG_0533 SPG_0534     FALSE 0.045 261.000 0.000 1.000   NA
 5755803 5755804 SPG_0534 SPG_0535   metF TRUE 0.964 64.000 0.050 0.002 Y NA
 5755804 5755805 SPG_0535 SPG_0536 metF   FALSE 0.015 685.000 0.000 1.000 N NA
 5755805 5755806 SPG_0536 SPG_0537   cysE TRUE 0.881 16.000 0.006 1.000 N NA
 5755806 5755807 SPG_0537 SPG_0538 cysE   TRUE 0.922 12.000 0.017 1.000   NA
 5755807 5755808 SPG_0538 SPG_0539   cysS TRUE 0.308 82.000 0.002 1.000   NA
 5755808 5755809 SPG_0539 SPG_0540 cysS   TRUE 0.982 -7.000 0.129 1.000   NA
 5755809 5755810 SPG_0540 SPG_0541     TRUE 0.942 4.000 0.017 NA   NA
 5755810 5755811 SPG_0541 SPG_0542     FALSE 0.077 137.000 0.000 NA   NA
 5755811 5755812 SPG_0542 SPG_0543     FALSE 0.071 146.000 0.000 NA   NA
 5755812 5755813 SPG_0543 SPG_0544     FALSE 0.025 353.000 0.000 NA   NA
 5755813 5755814 SPG_0544 SPG_0545     TRUE 0.995 13.000 0.917 1.000 Y NA
 5755814 5755815 SPG_0545 SPG_0546     TRUE 0.976 52.000 0.542 1.000 Y NA
 5755815 5755816 SPG_0546 SPG_0547   vncR FALSE 0.245 312.000 0.409 1.000 N NA
 5755816 5755817 SPG_0547 SPG_0548 vncR vncS TRUE 0.998 -3.000 1.000 1.000 Y NA
 5755817 5755818 SPG_0548 SPG_0549 vncS fba FALSE 0.081 141.000 0.000 1.000 N NA
 5755819 5755820 SPG_0550 SPG_0551     FALSE 0.097 295.000 0.000 0.061 N NA
 5755820 5755821 SPG_0551 SPG_0552     TRUE 0.999 10.000 0.947 0.012 Y NA
 5755821 5755822 SPG_0552 SPG_0553     TRUE 0.996 13.000 0.400 0.049 Y NA
 5755822 5755823 SPG_0553 SPG_0554     TRUE 0.989 11.000 0.185 1.000 Y NA
 5755824 5755825 SPG_0555 SPG_0556 recJ   FALSE 0.071 175.000 0.000 1.000   NA
 5755825 5755826 SPG_0556 SPG_0557     TRUE 0.742 69.000 0.143 NA   NA
 5755826 5755827 SPG_0557 SPG_0558     TRUE 0.329 112.000 0.100 NA   NA
 5755827 5755828 SPG_0558 SPG_0559     TRUE 0.998 5.000 0.467 0.008 Y NA
 5755828 5755829 SPG_0559 SPG_0560     TRUE 0.578 79.000 0.087 1.000 N NA
 5755829 5755830 SPG_0560 SPG_0561   uvrC TRUE 0.738 40.000 0.002 1.000 N NA
 5755830 5755831 SPG_0561 SPG_0562 uvrC   TRUE 0.572 50.000 0.000 NA   NA
 5755833 5755834 SPG_0564 SPG_0565     TRUE 0.933 23.000 0.000 0.016   NA
 5755834 5755835 SPG_0565 SPG_0566     TRUE 0.940 13.000 0.051 1.000 N NA
 5755835 5755836 SPG_0566 SPG_0567     TRUE 0.749 54.000 0.031 NA N NA
 5755836 5755837 SPG_0567 SPG_0568     FALSE 0.066 160.000 0.000 NA   NA
 5755837 5755838 SPG_0568 SPG_0569     TRUE 0.906 1.000 0.000 NA   NA
 5755838 5755839 SPG_0569 SPG_0570     FALSE 0.063 171.000 0.000 NA   NA
 5755839 5755840 SPG_0570 SPG_0571     FALSE 0.137 98.000 0.000 1.000 N NA
 5755840 5755841 SPG_0571 SPG_0572     TRUE 0.984 2.000 0.007 1.000 Y NA
 5755841 5755842 SPG_0572 SPG_0573     TRUE 0.838 26.000 0.007 1.000 N NA
 5755842 5755843 SPG_0573 SPG_0574   rplK FALSE 0.033 309.000 0.000 1.000 N NA
 5755843 5755844 SPG_0574 SPG_0575 rplK rplA TRUE 0.858 208.000 0.838 0.033 Y NA
 5755845 5755846 SPG_0576 SPG_0577     FALSE 0.034 281.000 0.000 NA   NA
 5755847 5755848 SPG_0578 SPG_0579     FALSE 0.014 1044.000 0.000 1.000   NA
 5755848 5755849 SPG_0579 SPG_0580     TRUE 0.976 2.000 0.098 NA   NA
 5755849 5755850 SPG_0580 SPG_0581     TRUE 0.974 2.000 0.083 NA   NA
 5755850 5755851 SPG_0581 SPG_0582     TRUE 0.642 39.000 0.000 NA   NA
 5755851 5755852 SPG_0582 SPG_0583     TRUE 0.888 -15.000 0.000 NA   NA
 5755852 5755853 SPG_0583 SPG_0584   prtA FALSE 0.014 688.000 0.000 NA   NA
 5755853 5755854 SPG_0584 SPG_0585 prtA   FALSE 0.017 626.000 0.000 1.000   NA
 5755854 5755855 SPG_0585 SPG_0586     TRUE 0.960 38.000 0.000 0.022 Y NA
 5755855 5755856 SPG_0586 SPG_0587     TRUE 0.944 48.000 0.000 0.032 Y NA
 5755856 5755857 SPG_0587 SPG_0588     FALSE 0.104 350.000 0.000 1.000 Y NA
 5755858 5755859 SPG_0589 SPG_0590     TRUE 0.867 -31.000 0.000 NA   NA
 5755859 5755860 SPG_0590 SPG_0591     TRUE 0.911 0.000 0.000 NA   NA
 5755860 5755861 SPG_0591 SPG_0592     FALSE 0.051 211.000 0.000 NA   NA
 5755862 5755863 SPG_0593 SPG_0594     TRUE 0.707 58.000 0.025 NA   NA
 5755863 5755864 SPG_0594 SPG_0595     TRUE 0.960 -16.000 0.042 NA   NA
 5755864 5755865 SPG_0595 SPG_0596     TRUE 0.979 -7.000 0.100 NA   NA
 5755865 5755866 SPG_0596 SPG_0597     TRUE 0.961 12.000 0.136 NA   NA
 5755866 5755867 SPG_0597 SPG_0598     FALSE 0.186 179.000 0.044 1.000   NA
 5755867 5755868 SPG_0598 SPG_0599     FALSE 0.058 211.000 0.000 1.000   NA
 5755868 5755869 SPG_0599 SPG_0600     TRUE 0.987 20.000 0.250 1.000 Y NA
 5755869 5755870 SPG_0600 SPG_0601     TRUE 0.996 11.000 0.875 1.000 Y NA
 5755870 5755871 SPG_0601 SPG_0602     FALSE 0.234 268.000 0.240 1.000   NA
 5755871 5755872 SPG_0602 SPG_0603     TRUE 0.997 -3.000 0.480 0.012   NA
 5755872 5755873 SPG_0603 SPG_0604     FALSE 0.196 116.000 0.020 NA   NA
 5755873 5755874 SPG_0604 SPG_0605   zmpB TRUE 0.880 22.000 0.020 NA   NA
 5755874 5755875 SPG_0605 SPG_0606 zmpB   TRUE 0.459 74.000 0.006 1.000   NA
 5755875 5755876 SPG_0606 SPG_0607     TRUE 0.946 1.000 0.006 NA   NA
 5755876 5755877 SPG_0607 SPG_0608     TRUE 0.709 50.000 0.006 NA   NA
 5755877 5755878 SPG_0608 SPG_0609   gki FALSE 0.125 181.000 0.015 NA   NA
 5755878 5755879 SPG_0609 SPG_0610 gki thyA FALSE 0.221 97.000 0.006 1.000 N NA
 5755881 5755882 SPG_0612 SPG_0613 miaA   TRUE 0.967 -7.000 0.027 1.000   NA
 5755882 5755883 SPG_0613 SPG_0614     TRUE 0.956 -7.000 0.014 NA   NA
 5755883 5755884 SPG_0614 SPG_0615   rnz TRUE 0.908 15.000 0.022 NA   NA
 5755884 5755885 SPG_0615 SPG_0616 rnz   TRUE 0.934 21.000 0.074 1.000   NA
 5755887 5755888 SPG_0618 SPG_0619     TRUE 0.967 0.000 0.035 NA   NA
 5755888 5755889 SPG_0619 SPG_0620     FALSE 0.164 89.000 0.000 NA   NA
 5755891 5755892 SPG_0622 SPG_0623     TRUE 0.979 -43.000 0.012 0.018   NA
 5755892 5755893 SPG_0623 SPG_0624     TRUE 0.881 20.000 0.015 NA   NA
 5755893 5755894 SPG_0624 SPG_0625     FALSE 0.024 363.000 0.000 NA   NA
 5755894 5755895 SPG_0625 SPG_0626     TRUE 0.320 71.000 0.000 NA   NA
 5755895 5755896 SPG_0626 SPG_0627     TRUE 0.994 2.000 1.000 NA   NA
 5755896 5755897 SPG_0627 SPG_0628   murD FALSE 0.116 104.000 0.000 1.000 N NA
 5755897 5755898 SPG_0628 SPG_0629 murD murG TRUE 0.988 4.000 0.060 1.000 Y NA
 5755898 5755899 SPG_0629 SPG_0630 murG   TRUE 0.984 10.000 0.072 NA Y NA
 5755899 5755900 SPG_0630 SPG_0631   pyrF FALSE 0.043 233.000 0.000 NA N NA
 5755900 5755901 SPG_0631 SPG_0632 pyrF pyrE TRUE 0.932 34.000 0.006 1.000 Y NA
 5755901 5755902 SPG_0632 SPG_0633 pyrE   FALSE 0.045 233.000 0.000 NA   NA
 5755902 5755903 SPG_0633 SPG_0634     TRUE 0.684 96.000 0.667 NA   NA
 5755903 5755904 SPG_0634 SPG_0635     TRUE 0.993 0.000 0.667 NA   NA
 5755904 5755905 SPG_0635 SPG_0636     TRUE 0.993 4.000 1.000 NA   NA
 5755905 5755906 SPG_0636 SPG_0637     TRUE 0.995 -3.000 1.000 NA   NA
 5755907 5755908 SPG_0638 SPG_0639     TRUE 0.813 75.000 0.037 0.009   NA
 5755908 5755909 SPG_0639 SPG_0640     TRUE 0.875 -22.000 0.000 NA   NA
 5755909 5755910 SPG_0640 SPG_0641     TRUE 0.821 12.000 0.000 NA   NA
 5755910 5755911 SPG_0641 SPG_0642     FALSE 0.131 100.000 0.000 1.000   NA
 5755911 5755912 SPG_0642 SPG_0643     TRUE 0.906 1.000 0.000 NA   NA
 5755912 5755913 SPG_0643 SPG_0644     TRUE 0.840 10.000 0.000 NA   NA
 5755913 5755914 SPG_0644 SPG_0645     TRUE 0.997 -40.000 0.841 0.012   NA
 5755915 5755916 SPG_0646 SPG_0647   lysU FALSE 0.093 128.000 0.000 1.000   NA
 5755916 5755917 SPG_0647 SPG_0648 lysU   FALSE 0.017 624.000 0.000 1.000 N NA
 5755917 5755918 SPG_0648 SPG_0649     FALSE 0.016 557.000 0.000 NA N NA
 5755918 5755919 SPG_0649 SPG_0650   thiM FALSE 0.026 327.000 0.000 NA N NA
 5755919 5755920 SPG_0650 SPG_0651 thiM thiE TRUE 0.997 2.000 0.061 0.005 Y NA
 5755920 5755921 SPG_0651 SPG_0652 thiE   FALSE 0.016 559.000 0.000 NA   NA
 5755921 5755922 SPG_0652 SPG_0653     TRUE 0.906 1.000 0.000 NA   NA
 5755922 5755923 SPG_0653 SPG_0654     TRUE 0.898 2.000 0.000 NA   NA
 5755923 5755924 SPG_0654 SPG_0655     TRUE 0.942 11.000 0.050 NA   NA
 5755924 5755925 SPG_0655 SPG_0656   thiW TRUE 0.957 5.000 0.052 NA   NA
 5755925 5755926 SPG_0656 SPG_0657 thiW   TRUE 0.974 0.000 0.059 NA   NA
 5755926 5755927 SPG_0657 SPG_0658   thiE2 TRUE 0.998 -7.000 0.190 0.005 Y NA
 5755929 5755930 SPG_0660 SPG_0661     TRUE 0.974 11.000 0.250 NA   NA
 5755930 5755931 SPG_0661 SPG_0662     TRUE 0.969 10.000 0.167 NA   NA
 5755931 5755932 SPG_0662 SPG_0663   spxB FALSE 0.059 207.000 0.000 1.000 N NA
 5755932 5755933 SPG_0663 SPG_0664 spxB   TRUE 0.314 111.000 0.083 NA   NA
 5755934 5755935 SPG_0665 SPG_0666     TRUE 0.686 32.000 0.000 NA   NA
 5755936 5755937 SPG_0667 SPG_0668     FALSE 0.269 132.000 0.000 0.027   NA
 5755940 5755941 SPG_0671 SPG_0672     TRUE 0.793 20.000 0.000 1.000   NA
 5755941 5755942 SPG_0672 SPG_0673     TRUE 0.647 59.000 0.012 NA   NA
 5755943 5755944 SPG_0674 SPG_0675     TRUE 0.796 19.000 0.000 1.000 N NA
 5755944 5755945 SPG_0675 SPG_0676   upp TRUE 0.847 68.000 0.041 1.000 Y NA
 5755945 5755946 SPG_0676 SPG_0677 upp   FALSE 0.125 174.000 0.010 1.000 N NA
 5755946 5755947 SPG_0677 SPG_0678     TRUE 0.986 17.000 0.080 0.001   NA
 5755947 5755948 SPG_0678 SPG_0679     TRUE 0.534 79.000 0.065 NA   NA
 5755948 5755949 SPG_0679 SPG_0680   livJ TRUE 0.381 101.000 0.109 NA   NA
 5755949 5755950 SPG_0680 SPG_0681 livJ livH TRUE 0.388 268.000 0.150 1.000 Y NA
 5755950 5755951 SPG_0681 SPG_0682 livH livM TRUE 0.997 4.000 0.363 0.047 Y NA
 5755951 5755952 SPG_0682 SPG_0683 livM livG TRUE 0.996 0.000 0.349 1.000 Y NA
 5755952 5755953 SPG_0683 SPG_0684 livG livF TRUE 0.997 0.000 0.128 0.035 Y NA
 5755953 5755954 SPG_0684 SPG_0685 livF   FALSE 0.187 308.000 0.214 1.000   NA
 5755954 5755955 SPG_0685 SPG_0686     FALSE 0.057 214.000 0.000 1.000   NA
 5755955 5755956 SPG_0686 SPG_0687   ftsE TRUE 0.931 18.000 0.053 1.000 N NA
 5755956 5755957 SPG_0687 SPG_0688 ftsE   TRUE 0.997 -7.000 0.431 1.000 Y NA
 5755957 5755958 SPG_0688 SPG_0689     FALSE 0.098 286.000 0.000 0.083   NA
 5755958 5755959 SPG_0689 SPG_0690     TRUE 0.495 182.000 0.119 0.021   NA
 5755959 5755960 SPG_0690 SPG_0691     TRUE 0.943 52.000 0.610 NA   NA
 5755960 5755961 SPG_0691 SPG_0692     TRUE 0.804 14.000 0.000 NA   NA
 5755961 5755962 SPG_0692 SPG_0693     FALSE 0.074 140.000 0.000 NA   NA
 5755962 5755963 SPG_0693 SPG_0694   metK FALSE 0.025 377.000 0.000 1.000 N NA
 5755963 5755964 SPG_0694 SPG_0695 metK   FALSE 0.018 553.000 0.000 1.000 N NA
 5755964 5755965 SPG_0695 SPG_0696     TRUE 0.770 34.000 0.002 1.000 N NA
 5755965 5755966 SPG_0696 SPG_0697   sodA FALSE 0.132 173.000 0.012 1.000 N NA
 5755966 5755967 SPG_0697 SPG_0698 sodA   FALSE 0.152 157.000 0.021 NA   NA
 5755967 5755968 SPG_0698 SPG_0699     TRUE 0.879 21.000 0.016 NA   NA
 5755968 5755969 SPG_0699 SPG_0700     FALSE 0.223 99.000 0.012 NA   NA
 5755969 5755970 SPG_0700 SPG_0701     TRUE 0.959 2.000 0.027 NA   NA
 5755971 5755972 SPG_0702 SPG_0703     FALSE 0.093 114.000 0.000 NA   NA
 5755972 5755973 SPG_0703 SPG_0704     FALSE 0.018 479.000 0.000 NA   NA
 5755974 5755975 SPG_0705 SPG_0706 rpsP   TRUE 0.973 20.000 0.385 1.000   NA
 5755975 5755976 SPG_0706 SPG_0707     FALSE 0.016 577.000 0.000 NA   NA
 5755976 5755977 SPG_0707 SPG_0708   rimM TRUE 0.776 31.000 0.002 NA   NA
 5755977 5755978 SPG_0708 SPG_0709 rimM trmD TRUE 0.997 -10.000 0.672 1.000 Y NA
 5755978 5755979 SPG_0709 SPG_0710 trmD   TRUE 0.884 12.000 0.002 1.000   NA
 5755982 5755983 SPG_0713 SPG_0714 bioY gor FALSE 0.056 196.000 0.000 NA   NA
 5755984 5755985 SPG_0715 SPG_0716     TRUE 0.993 -16.000 0.923 1.000 N NA
 5755985 5755986 SPG_0716 SPG_0717     TRUE 0.998 2.000 0.923 1.000 Y NA
 5755986 5755987 SPG_0717 SPG_0718   metG FALSE 0.142 124.000 0.003 1.000 N NA
 5755987 5755988 SPG_0718 SPG_0719 metG   FALSE 0.019 421.000 0.000 NA N NA
 5755988 5755989 SPG_0719 SPG_0720     TRUE 0.987 4.000 0.429 NA   NA
 5755989 5755990 SPG_0720 SPG_0721     FALSE 0.283 75.000 0.000 NA   NA
 5755990 5755991 SPG_0721 SPG_0722     FALSE 0.226 96.000 0.008 NA   NA
 5755991 5755992 SPG_0722 SPG_0723     TRUE 0.993 -7.000 0.710 NA   NA
 5755992 5755993 SPG_0723 SPG_0724     TRUE 0.953 11.000 0.067 1.000 N NA
 5755993 5755994 SPG_0724 SPG_0725     TRUE 0.890 -22.000 0.000 1.000   NA
 5755994 5755995 SPG_0725 SPG_0726     TRUE 0.871 -25.000 0.000 NA   NA
 5755995 5755996 SPG_0726 SPG_0727     FALSE 0.086 123.000 0.000 NA   NA
 5755996 5755997 SPG_0727 SPG_0728   ciaR TRUE 0.306 109.000 0.061 1.000 N NA
 5755997 5755998 SPG_0728 SPG_0729 ciaR ciaH TRUE 0.997 -10.000 0.606 1.000 Y NA
 5756000 5756001 SPG_0731 SPG_0732     FALSE 0.061 200.000 0.000 1.000 N NA
 5756001 5756002 SPG_0732 SPG_0733     TRUE 0.830 37.000 0.019 1.000 N NA
 5756002 5756003 SPG_0733 SPG_0734     TRUE 0.903 11.000 0.008 NA   NA
 5756003 5756004 SPG_0734 SPG_0735     FALSE 0.185 85.000 0.000 NA   NA
 5756004 5756005 SPG_0735 SPG_0736   gyrB TRUE 0.904 15.000 0.013 1.000   NA
 5756005 5756006 SPG_0736 SPG_0737 gyrB ezrA TRUE 0.374 82.000 0.011 1.000 N NA
 5756007 5756008 SPG_0738 SPG_0739     FALSE 0.039 261.000 0.000 NA   NA
 5756008 5756009 SPG_0739 SPG_0740     FALSE 0.257 165.000 0.114 NA   NA
 5756010 5756011 SPG_0741 SPG_0742     FALSE 0.067 159.000 0.000 NA   NA
 5756012 5756013 SPG_0743 SPG_0744     FALSE 0.046 229.000 0.000 NA   NA
 5756014 5756015 SPG_0745 SPG_0746     TRUE 0.997 0.000 0.640 1.000 Y NA
 5756015 5756016 SPG_0746 SPG_0747     FALSE 0.176 133.000 0.017 1.000 N NA
 5756016 5756017 SPG_0747 SPG_0748     FALSE 0.175 142.000 0.030 NA N NA
 5756017 5756018 SPG_0748 SPG_0749   ripA FALSE 0.127 282.000 0.000 NA Y NA
 5756018 5756019 SPG_0749 SPG_0750 ripA   TRUE 0.971 14.000 0.018 1.000 Y NA
 5756019 5756020 SPG_0750 SPG_0751     TRUE 0.973 2.000 0.080 NA   NA
 5756020 5756021 SPG_0751 SPG_0752   pnp TRUE 0.942 16.000 0.083 NA   NA
 5756021 5756022 SPG_0752 SPG_0753 pnp   FALSE 0.021 476.000 0.000 1.000   NA
 5756022 5756023 SPG_0753 SPG_0754     TRUE 0.858 10.000 0.000 1.000   NA
 5756023 5756024 SPG_0754 SPG_0755     TRUE 0.755 25.000 0.000 1.000   NA
 5756024 5756025 SPG_0755 SPG_0756   deoD FALSE 0.017 654.000 0.000 1.000   NA
 5756026 5756027 SPG_0757 SPG_0758   rpsT TRUE 0.652 53.000 0.002 1.000 N NA
 5756027 5756028 SPG_0758 SPG_0759 rpsT coaA TRUE 0.571 68.000 0.014 1.000 N NA
 5756029 5756030 SPG_0760 SPG_0761     FALSE 0.023 374.000 0.000 NA   NA
 5756030 5756031 SPG_0761 SPG_0762   pdp TRUE 0.973 -3.000 0.044 1.000 N NA
 5756031 5756032 SPG_0762 SPG_0763 pdp deoC TRUE 0.981 18.000 0.106 1.000 Y NA
 5756032 5756033 SPG_0763 SPG_0764 deoC   TRUE 0.989 -13.000 0.051 1.000 Y NA
 5756033 5756034 SPG_0764 SPG_0765     TRUE 0.570 91.000 0.200 1.000   NA
 5756034 5756035 SPG_0765 SPG_0766     FALSE 0.181 144.000 0.024 1.000   NA
 5756035 5756036 SPG_0766 SPG_0767     TRUE 0.991 -7.000 0.438 1.000   NA
 5756036 5756037 SPG_0767 SPG_0768     TRUE 0.996 3.000 0.720 0.047   NA
 5756037 5756038 SPG_0768 SPG_0769     FALSE 0.196 84.000 0.000 NA   NA
 5756038 5756039 SPG_0769 SPG_0770     FALSE 0.077 137.000 0.000 NA   NA
 5756039 5756040 SPG_0770 SPG_0771     TRUE 0.911 0.000 0.000 NA   NA
 5756042 5756043 SPG_0773 SPG_0774 parE   FALSE 0.088 121.000 0.000 NA   NA
 5756043 5756044 SPG_0774 SPG_0775   parC FALSE 0.062 174.000 0.000 NA   NA
 5756044 5756045 SPG_0775 SPG_0776 parC   TRUE 0.336 110.000 0.086 1.000 N NA
 5756045 5756046 SPG_0776 SPG_0777     TRUE 0.505 56.000 0.000 NA   NA
 5756046 5756047 SPG_0777 SPG_0778     TRUE 0.406 65.000 0.000 NA   NA
 5756047 5756048 SPG_0778 SPG_0779     TRUE 0.995 -3.000 0.939 NA   NA
 5756048 5756049 SPG_0779 SPG_0780     TRUE 0.971 15.000 0.300 NA   NA
 5756049 5756050 SPG_0780 SPG_0781     FALSE 0.064 168.000 0.000 NA   NA
 5756050 5756051 SPG_0781 SPG_0782     TRUE 0.572 50.000 0.000 NA   NA
 5756051 5756052 SPG_0782 SPG_0783     TRUE 0.840 10.000 0.000 NA   NA
 5756052 5756053 SPG_0783 SPG_0784   rpsA FALSE 0.066 162.000 0.000 NA   NA
 5756054 5756055 SPG_0785 SPG_0786     FALSE 0.034 281.000 0.000 NA   NA
 5756056 5756057 SPG_0787 SPG_0788   dnaX TRUE 0.965 0.000 0.030 NA N NA
 5756057 5756058 SPG_0788 SPG_0789 dnaX   TRUE 0.338 100.000 0.067 NA   NA
 5756058 5756059 SPG_0789 SPG_0790     FALSE 0.106 150.000 0.003 NA   NA
 5756059 5756060 SPG_0790 SPG_0791     TRUE 0.975 28.000 0.139 1.000 Y NA
 5756060 5756061 SPG_0791 SPG_0792     TRUE 0.986 11.000 0.606 1.000 N NA
 5756061 5756062 SPG_0792 SPG_0793     TRUE 0.987 -13.000 0.292 1.000 N NA
 5756062 5756063 SPG_0793 SPG_0794     TRUE 0.961 54.000 0.152 0.002 N NA
 5756065 5756066 SPG_0796 SPG_0797   ssrA FALSE 0.015 646.000 0.000 NA   NA
 5756068 5756069 SPG_0799 SPG_0800     TRUE 0.998 -3.000 0.721 1.000 Y NA
 5756069 5756070 SPG_0800 SPG_0801     TRUE 0.998 -3.000 0.816 1.000 Y NA
 5756070 5756071 SPG_0801 SPG_0802     TRUE 0.761 21.000 0.000 NA   NA
 5756071 5756072 SPG_0802 SPG_0803     TRUE 0.857 -84.000 0.000 NA   NA
 5756074 5756075 SPG_0805 SPG_0806   thiI TRUE 0.983 9.000 0.349 1.000 N NA
 5756075 5756076 SPG_0806 SPG_0807 thiI   FALSE 0.126 135.000 0.005 NA   NA
 5756076 5756077 SPG_0807 SPG_0808     TRUE 0.463 59.000 0.000 NA   NA
 5756077 5756078 SPG_0808 SPG_0809     TRUE 0.751 22.000 0.000 NA   NA
 5756078 5756079 SPG_0809 SPG_0810     TRUE 0.911 0.000 0.000 NA   NA
 5756079 5756080 SPG_0810 SPG_0811     TRUE 0.958 13.000 0.130 NA   NA
 5756080 5756081 SPG_0811 SPG_0812     FALSE 0.019 508.000 0.000 1.000 N NA
 5756081 5756082 SPG_0812 SPG_0813     TRUE 0.991 13.000 0.092 0.072 Y NA
 5756082 5756083 SPG_0813 SPG_0814     TRUE 0.452 60.000 0.000 NA   NA
 5756083 5756084 SPG_0814 SPG_0815     TRUE 0.954 -3.000 0.009 NA   NA
 5756084 5756085 SPG_0815 SPG_0816     FALSE 0.102 118.000 0.000 1.000   NA
 5756085 5756086 SPG_0816 SPG_0817     TRUE 0.871 34.000 0.000 0.072   NA
 5756086 5756087 SPG_0817 SPG_0818     TRUE 0.970 30.000 0.048 0.004   NA
 5756088 5756089 SPG_0819 SPG_0820 argR1   TRUE 0.811 17.000 0.000 1.000   NA
 5756090 5756091 SPG_0821 SPG_0822   pfkA TRUE 0.559 83.000 0.098 1.000 N NA
 5756091 5756092 SPG_0822 SPG_0823 pfkA   TRUE 0.960 59.000 0.261 0.006   NA
 5756092 5756093 SPG_0823 SPG_0824     TRUE 0.992 -3.000 0.021 0.001   NA
 5756097 5756098 SPG_0828 SPG_0829     TRUE 0.875 4.000 0.000 NA   NA
 5756099 5756100 SPG_0830 SPG_0831     TRUE 0.995 -3.000 0.841 NA   NA
 5756100 5756101 SPG_0831 SPG_0832     TRUE 0.977 1.000 0.091 NA   NA
 5756102 5756103 SPG_0833 SPG_0834     FALSE 0.038 264.000 0.000 NA   NA
 5756103 5756104 SPG_0834 SPG_0835     FALSE 0.228 79.000 0.000 NA   NA
 5756104 5756105 SPG_0835 SPG_0836     FALSE 0.012 974.000 0.000 NA N NA
 5756105 5756106 SPG_0836 SPG_0837     TRUE 0.994 2.000 0.855 1.000   NA
 5756107 5756108 SPG_0838 SPG_0839     TRUE 0.718 26.000 0.000 NA   NA
 5756110 5756111 SPG_0840 SPG_0842     TRUE 0.686 32.000 0.000 NA   NA
 5756112 5756113 SPG_0843 SPG_0844   speE TRUE 0.695 31.000 0.000 NA   NA
 5756113 5756114 SPG_0844 SPG_0845 speE   TRUE 0.990 -3.000 0.036 1.000 Y NA
 5756114 5756115 SPG_0845 SPG_0846   nspC TRUE 0.997 0.000 0.444 1.000 Y NA
 5756115 5756116 SPG_0846 SPG_0847 nspC   TRUE 0.989 -3.000 0.025 1.000 Y NA
 5756116 5756117 SPG_0847 SPG_0848     TRUE 0.966 -43.000 0.084 1.000   NA
 5756119 5756120 SPG_0850 SPG_0851     TRUE 0.522 54.000 0.000 NA   NA
 5756122 5756123 SPG_0853 SPG_0854 smrC   TRUE 0.983 -3.000 0.119 1.000 N NA
 5756123 5756124 SPG_0854 SPG_0855     TRUE 0.976 -10.000 0.082 1.000 N NA
 5756124 5756125 SPG_0855 SPG_0856   cbpE TRUE 0.898 3.000 0.000 1.000   NA
 5756125 5756126 SPG_0856 SPG_0857 cbpE   FALSE 0.187 101.000 0.003 1.000   NA
 5756126 5756127 SPG_0857 SPG_0858     TRUE 0.985 -28.000 0.005 0.001   NA
 5756127 5756128 SPG_0858 SPG_0859   proA TRUE 0.979 10.000 0.281 1.000   NA
 5756128 5756129 SPG_0859 SPG_0860 proA proC TRUE 0.992 4.000 0.000 0.002 Y NA
 5756129 5756130 SPG_0860 SPG_0861 proC tmk FALSE 0.052 220.000 0.000 1.000 N NA
 5756130 5756131 SPG_0861 SPG_0862 tmk holB TRUE 0.989 -3.000 0.254 1.000 N NA
 5756131 5756132 SPG_0862 SPG_0863 holB   TRUE 0.840 40.000 0.038 NA   NA
 5756132 5756133 SPG_0863 SPG_0864     TRUE 0.960 3.000 0.043 NA   NA
 5756133 5756134 SPG_0864 SPG_0865     FALSE 0.046 227.000 0.000 NA   NA
 5756134 5756135 SPG_0865 SPG_0866     FALSE 0.099 109.000 0.000 NA   NA
 5756135 5756136 SPG_0866 SPG_0868     TRUE 0.859 7.000 0.000 NA   NA
 5756137 5756138 SPG_0867 SPG_0869     FALSE 0.046 228.000 0.000 NA   NA
 5756139 5756140 SPG_0870 SPG_0871   pyrH TRUE 0.288 84.000 0.002 1.000 N NA
 5756140 5756141 SPG_0871 SPG_0872 pyrH   TRUE 0.988 9.000 0.626 1.000 N NA
 5756141 5756142 SPG_0872 SPG_0873     TRUE 0.868 21.000 0.012 NA   NA
 5756142 5756143 SPG_0873 SPG_0874     TRUE 0.924 9.000 0.013 NA   NA
 5756143 5756144 SPG_0874 SPG_0875     TRUE 0.304 86.000 0.010 NA   NA
 5756144 5756145 SPG_0875 SPG_0876     FALSE 0.158 108.000 0.002 1.000 N NA
 5756145 5756146 SPG_0876 SPG_0877   comEA TRUE 0.754 68.000 0.125 1.000 N NA
 5756146 5756147 SPG_0877 SPG_0878 comEA comEC TRUE 0.929 -16.000 0.002 1.000   NA
 5756147 5756148 SPG_0878 SPG_0879 comEC   FALSE 0.047 221.000 0.000 NA   NA
 5756148 5756149 SPG_0879 SPG_0880     TRUE 0.686 32.000 0.000 NA   NA
 5756149 5756150 SPG_0880 SPG_0881     TRUE 0.988 4.000 0.500 NA   NA
 5756152 5756153 SPG_0883 SPG_0884   rpmI TRUE 0.988 33.000 0.652 1.000 Y NA
 5756153 5756154 SPG_0884 SPG_0885 rpmI rplT TRUE 0.994 52.000 0.928 0.022 Y NA
 5756154 5756155 SPG_0885 SPG_0886 rplT lguL TRUE 0.619 58.000 0.003 1.000 N NA
 5756155 5756156 SPG_0886 SPG_0887 lguL pyrDII FALSE 0.047 250.000 0.000 1.000 N NA
 5756156 5756157 SPG_0887 SPG_0888 pyrDII   TRUE 0.985 11.000 0.592 1.000 N NA
 5756157 5756158 SPG_0888 SPG_0889   lytB FALSE 0.206 99.000 0.005 1.000   NA
 5756160 5756161 SPG_0891 SPG_0892   dgkA TRUE 0.955 -19.000 0.035 NA   NA
 5756161 5756162 SPG_0892 SPG_0893 dgkA   TRUE 0.939 17.000 0.063 1.000   NA
 5756162 5756163 SPG_0893 SPG_0894   fpg TRUE 0.723 49.000 0.004 1.000   NA
 5756163 5756164 SPG_0894 SPG_0895 fpg coaE TRUE 0.977 0.000 0.066 1.000 N NA
 5756164 5756165 SPG_0895 SPG_0896 coaE   TRUE 0.944 -13.000 0.007 1.000 N NA
 5756165 5756166 SPG_0896 SPG_0897   secG FALSE 0.246 189.000 0.007 0.056 N NA
 5756166 5756167 SPG_0897 SPG_0898 secG rnr TRUE 0.336 102.000 0.064 1.000 N NA
 5756167 5756168 SPG_0898 SPG_0899 rnr   TRUE 0.990 -37.000 0.143 0.029 N NA
 5756168 5756169 SPG_0899 SPG_0900   tehB TRUE 0.861 16.000 0.002 1.000 N NA
 5756169 5756170 SPG_0900 SPG_0901 tehB coiA TRUE 0.303 73.000 0.000 NA   NA
 5756170 5756171 SPG_0901 SPG_0902 coiA pepB TRUE 0.959 19.000 0.204 NA   NA
 5756171 5756172 SPG_0902 SPG_0903 pepB   TRUE 0.961 2.000 0.024 1.000   NA
 5756172 5756173 SPG_0903 SPG_0904     TRUE 0.604 67.000 0.016 1.000   NA
 5756173 5756174 SPG_0904 SPG_0905     TRUE 0.979 -16.000 0.000 0.004   NA
 5756174 5756175 SPG_0905 SPG_0906     TRUE 0.923 36.000 0.000 0.004   NA
 5756176 5756177 SPG_0907 SPG_0908     TRUE 0.911 0.000 0.000 NA   NA
 5756177 5756178 SPG_0908 SPG_0909     FALSE 0.015 627.000 0.000 NA   NA
 5756178 5756179 SPG_0909 SPG_0910     TRUE 0.960 0.000 0.018 NA   NA
 5756179 5756180 SPG_0910 SPG_0911     TRUE 0.955 0.000 0.012 NA   NA
 5756180 5756181 SPG_0911 SPG_0912     TRUE 0.376 95.000 0.062 NA   NA
 5756182 5756183 SPG_0913 SPG_0914     TRUE 0.927 10.000 0.015 1.000 N NA
 5756183 5756184 SPG_0914 SPG_0915     TRUE 0.923 12.000 0.025 NA   NA
 5756184 5756185 SPG_0915 SPG_0916     TRUE 0.920 17.000 0.041 NA   NA
 5756185 5756186 SPG_0916 SPG_0917     TRUE 0.415 77.000 0.006 1.000   NA
 5756186 5756187 SPG_0917 SPG_0918     TRUE 0.641 98.000 0.105 0.037   NA
 5756187 5756188 SPG_0918 SPG_0919     TRUE 0.967 9.000 0.105 1.000 N NA
 5756188 5756189 SPG_0919 SPG_0920     FALSE 0.037 291.000 0.000 1.000   NA
 5756189 5756190 SPG_0920 SPG_0921     FALSE 0.033 285.000 0.000 NA   NA
 5756190 5756191 SPG_0921 SPG_0922     FALSE 0.018 480.000 0.000 NA   NA
 5756191 5756192 SPG_0922 SPG_0923     TRUE 0.727 25.000 0.000 NA   NA
 5756192 5756193 SPG_0923 SPG_0924     FALSE 0.045 231.000 0.000 NA   NA
 5756193 5756194 SPG_0924 SPG_0925     TRUE 0.994 11.000 0.500 1.000 Y NA
 5756194 5756195 SPG_0925 SPG_0926     FALSE 0.026 374.000 0.000 1.000 N NA
 5756195 5756196 SPG_0926 SPG_0927     FALSE 0.080 143.000 0.000 1.000 N NA
 5756196 5756197 SPG_0927 SPG_0928   phtD TRUE 0.986 8.000 0.500 NA   NA
 5756197 5756198 SPG_0928 SPG_0929 phtD phtD TRUE 0.768 20.000 0.000 NA   NA
 5756198 5756199 SPG_0929 SPG_0930 phtD phtD FALSE 0.052 210.000 0.000 NA   NA
 5756199 5756200 SPG_0930 SPG_0931 phtD phtE FALSE 0.013 830.000 0.000 NA   NA
 5756200 5756201 SPG_0931 SPG_0932 phtE   FALSE 0.031 295.000 0.000 NA   NA
 5756202 5756203 SPG_0933 SPG_0934     TRUE 0.980 -22.000 0.000 0.001   NA
 5756205 5756206 SPG_0936 SPG_0937 mscL   TRUE 0.560 82.000 0.003 0.061   NA
 5756207 5756208 SPG_0938 SPG_0939     FALSE 0.115 100.000 0.000 NA   NA
 5756208 5756209 SPG_0939 SPG_0940   asd FALSE 0.026 343.000 0.000 NA   NA
 5756209 5756210 SPG_0940 SPG_0941 asd dapA TRUE 0.924 56.000 0.063 1.000 Y NA
 5756211 5756212 SPG_0942 SPG_0943 trmE   FALSE 0.125 138.000 0.003 1.000   NA
 5756213 5756214 SPG_0944 SPG_0945 tdk   TRUE 0.977 -3.000 0.062 1.000 N NA
 5756214 5756215 SPG_0945 SPG_0946     TRUE 0.993 0.000 0.084 1.000 Y NA
 5756215 5756216 SPG_0946 SPG_0947     TRUE 0.985 -16.000 0.029 NA Y NA
 5756216 5756217 SPG_0947 SPG_0948     TRUE 0.949 2.000 0.012 NA   NA
 5756217 5756218 SPG_0948 SPG_0949   glyA TRUE 0.753 62.000 0.056 1.000   NA
 5756218 5756219 SPG_0949 SPG_0950 glyA   TRUE 0.966 8.000 0.103 NA   NA
 5756219 5756220 SPG_0950 SPG_0951     TRUE 0.981 0.000 0.128 NA   NA
 5756220 5756221 SPG_0951 SPG_0952     TRUE 0.500 74.000 0.019 NA   NA
 5756221 5756222 SPG_0952 SPG_0953     TRUE 0.499 74.000 0.019 NA   NA
 5756222 5756223 SPG_0953 SPG_0954     FALSE 0.015 738.000 0.000 1.000 N NA
 5756223 5756224 SPG_0954 SPG_0955     TRUE 0.982 4.000 0.250 NA   NA
 5756224 5756225 SPG_0955 SPG_0956   piaA FALSE 0.088 121.000 0.000 NA   NA
 5756225 5756226 SPG_0956 SPG_0957 piaA piaB TRUE 0.997 -10.000 0.778 1.000 Y NA
 5756226 5756227 SPG_0957 SPG_0958 piaB piaC TRUE 0.999 0.000 0.800 0.045 Y NA
 5756227 5756228 SPG_0958 SPG_0959 piaC piaD TRUE 0.996 0.000 0.250 1.000 Y NA
 5756228 5756229 SPG_0959 SPG_0960 piaD   FALSE 0.013 873.000 0.000 NA   NA
 5756229 5756230 SPG_0960 SPG_0961     FALSE 0.029 310.000 0.000 NA   NA
 5756230 5756231 SPG_0961 SPG_0962     FALSE 0.019 433.000 0.000 NA   NA
 5756231 5756232 SPG_0962 SPG_0963     TRUE 0.517 127.000 0.500 NA   NA
 5756232 5756233 SPG_0963 SPG_0964     FALSE 0.185 85.000 0.000 NA   NA
 5756233 5756234 SPG_0964 SPG_0965     FALSE 0.014 684.000 0.000 NA   NA
 5756234 5756235 SPG_0965 SPG_0966     TRUE 0.645 92.000 0.400 NA   NA
 5756235 5756236 SPG_0966 SPG_0967     FALSE 0.036 268.000 0.000 NA   NA
 5756236 5756237 SPG_0967 SPG_0968     FALSE 0.027 321.000 0.000 NA   NA
 5756237 5756238 SPG_0968 SPG_0969     TRUE 0.800 62.000 0.125 NA   NA
 5756238 5756239 SPG_0969 SPG_0970     TRUE 0.480 58.000 0.000 NA   NA
 5756239 5756240 SPG_0970 SPG_0971     TRUE 0.296 112.000 0.077 NA N NA
 5756240 5756241 SPG_0971 SPG_0972     FALSE 0.075 163.000 0.000 1.000   NA
 5756241 5756242 SPG_0972 SPG_0973     TRUE 0.914 -3.000 0.000 NA   NA
 5756242 5756243 SPG_0973 SPG_0974     TRUE 0.665 36.000 0.000 NA   NA
 5756243 5756244 SPG_0974 SPG_0975     TRUE 0.751 22.000 0.000 NA   NA
 5756246 5756247 SPG_0977 SPG_0978     TRUE 0.893 -13.000 0.000 NA   NA
 5756247 5756248 SPG_0978 SPG_0979     FALSE 0.027 325.000 0.000 NA   NA
 5756248 5756249 SPG_0979 SPG_0980     TRUE 0.875 4.000 0.000 NA   NA
 5756249 5756250 SPG_0980 SPG_0981     TRUE 0.883 3.000 0.000 NA   NA
 5756250 5756251 SPG_0981 SPG_0982     TRUE 0.898 2.000 0.000 NA   NA
 5756251 5756252 SPG_0982 SPG_0983     TRUE 0.762 24.000 0.000 1.000   NA
 5756252 5756253 SPG_0983 SPG_0984     TRUE 0.910 2.000 0.000 1.000   NA
 5756253 5756254 SPG_0984 SPG_0985     TRUE 0.840 10.000 0.000 NA   NA
 5756254 5756255 SPG_0985 SPG_0986     FALSE 0.014 680.000 0.000 NA   NA
 5756255 5756256 SPG_0986 SPG_0987     FALSE 0.019 448.000 0.000 NA   NA
 5756256 5756257 SPG_0987 SPG_0988     FALSE 0.038 264.000 0.000 NA   NA
 5756257 5756258 SPG_0988 SPG_0989   ppc TRUE 0.906 20.000 0.028 1.000 N NA
 5756258 5756259 SPG_0989 SPG_0990 ppc   FALSE 0.020 413.000 0.000 NA   NA
 5756259 5756260 SPG_0990 SPG_0991     TRUE 0.835 69.000 0.368 NA   NA
 5756260 5756261 SPG_0991 SPG_0992     TRUE 0.995 -3.000 0.895 1.000   NA
 5756261 5756262 SPG_0992 SPG_0993   dnaG FALSE 0.248 90.000 0.002 1.000   NA
 5756262 5756263 SPG_0993 SPG_0994 dnaG rpoD TRUE 0.982 3.000 0.209 1.000 N NA
 5756263 5756264 SPG_0994 SPG_0995 rpoD   TRUE 0.929 14.000 0.044 NA   NA
 5756264 5756265 SPG_0995 SPG_0996     FALSE 0.195 115.000 0.019 NA   NA
 5756265 5756266 SPG_0996 SPG_0997     TRUE 0.997 16.000 0.413 0.010 Y NA
 5756266 5756267 SPG_0997 SPG_0998     TRUE 0.835 31.000 0.016 NA N NA
 5756267 5756268 SPG_0998 SPG_0999     TRUE 0.839 59.000 0.167 NA   NA
 5756268 5756269 SPG_0999 SPG_1000     TRUE 0.507 70.000 0.011 NA   NA
 5756269 5756270 SPG_1000 SPG_1001     TRUE 0.912 10.000 0.009 NA   NA
 5756270 5756271 SPG_1001 SPG_1002   murA1 FALSE 0.012 1143.000 0.000 NA   NA
 5756271 5756272 SPG_1002 SPG_1003 murA1   TRUE 0.934 16.000 0.052 1.000 N NA
 5756272 5756273 SPG_1003 SPG_1004     TRUE 0.990 -7.000 0.342 1.000 N NA
 5756273 5756274 SPG_1004 SPG_1005     TRUE 0.968 16.000 0.235 1.000 N NA
 5756274 5756275 SPG_1005 SPG_1006     FALSE 0.046 225.000 0.000 NA   NA
 5756275 5756276 SPG_1006 SPG_1007     TRUE 0.983 17.000 0.750 NA   NA
 5756276 5756277 SPG_1007 SPG_1008   pcrA TRUE 0.374 192.000 0.000 0.069 Y NA
 5756277 5756278 SPG_1008 SPG_1010 pcrA radC TRUE 0.968 43.000 0.005 0.015 Y NA
 5756279 5756280 SPG_1009 SPG_1011     TRUE 0.983 18.000 0.714 1.000   NA
 5756280 5756281 SPG_1011 SPG_1012     TRUE 0.588 83.000 0.143 NA   NA
 5756281 5756282 SPG_1012 SPG_1013     TRUE 0.955 8.000 0.056 NA   NA
 5756282 5756283 SPG_1013 SPG_1014     TRUE 0.975 5.000 0.166 NA   NA
 5756283 5756284 SPG_1014 SPG_1015   prs2 TRUE 0.986 10.000 0.089 1.000 Y NA
 5756284 5756285 SPG_1015 SPG_1016 prs2   TRUE 0.385 113.000 0.145 1.000   NA
 5756286 5756287 SPG_1017 SPG_1018     TRUE 0.992 -16.000 0.725 1.000   NA
 5756287 5756288 SPG_1018 SPG_1019     TRUE 0.985 -3.000 0.150 1.000 N NA
 5756288 5756289 SPG_1019 SPG_1020   pta TRUE 0.865 44.000 0.067 1.000 N NA
 5756291 5756292 SPG_1022 SPG_1023   rplU FALSE 0.029 312.000 0.000 NA   NA
 5756292 5756293 SPG_1023 SPG_1024 rplU   TRUE 0.963 16.000 0.208 NA   NA
 5756293 5756294 SPG_1024 SPG_1025   rpmA TRUE 0.985 17.000 0.203 NA Y NA
 5756295 5756296 SPG_1026 SPG_1027     TRUE 0.869 -28.000 0.000 NA   NA
 5756299 5756300 SPG_1030 SPG_1031   hup TRUE 0.343 106.000 0.098 NA   NA
 5756300 5756301 SPG_1031 SPG_1032 hup   FALSE 0.022 425.000 0.000 1.000   NA
 5756301 5756302 SPG_1032 SPG_1033     TRUE 0.953 3.000 0.019 1.000   NA
 5756302 5756303 SPG_1033 SPG_1034     TRUE 0.793 80.000 0.600 NA   NA
 5756303 5756304 SPG_1034 SPG_1035   ligA FALSE 0.206 93.000 0.002 NA   NA
 5756304 5756305 SPG_1035 SPG_1036 ligA   FALSE 0.148 112.000 0.002 1.000 N NA
 5756305 5756306 SPG_1036 SPG_1037     TRUE 0.505 56.000 0.000 NA   NA
 5756306 5756307 SPG_1037 SPG_1038     FALSE 0.017 545.000 0.000 NA   NA
 5756307 5756308 SPG_1038 SPG_1039   glgB FALSE 0.025 376.000 0.000 1.000 N NA
 5756308 5756309 SPG_1039 SPG_1040 glgB glgC TRUE 0.999 -10.000 0.317 0.002 Y NA
 5756309 5756310 SPG_1040 SPG_1041 glgC glgD TRUE 0.999 -10.000 0.810 0.001 Y NA
 5756310 5756311 SPG_1041 SPG_1042 glgD glgA TRUE 0.997 -3.000 0.395 1.000 Y NA
 5756311 5756312 SPG_1042 SPG_1043 glgA   TRUE 0.614 59.000 0.003 1.000   NA
 5756312 5756313 SPG_1043 SPG_1044     FALSE 0.150 116.000 0.005 NA   NA
 5756313 5756314 SPG_1044 SPG_1046     TRUE 0.914 9.000 0.007 NA   NA
 5756317 5756318 SPG_1048 SPG_1049     FALSE 0.020 417.000 0.000 NA   NA
 5756319 5756320 SPG_1050 SPG_1051 rexB rexA TRUE 0.996 -3.000 0.070 0.069 Y NA
 5756320 5756321 SPG_1051 SPG_1052 rexA   FALSE 0.042 395.000 0.010 NA   NA
 5756321 5756322 SPG_1052 SPG_1053   igA FALSE 0.052 209.000 0.000 NA   NA
 5756322 5756323 SPG_1053 SPG_1054 igA zmpD TRUE 0.905 44.000 0.000 0.003   NA
 5756323 5756324 SPG_1054 SPG_1055 zmpD   FALSE 0.073 167.000 0.000 1.000   NA
 5756326 5756327 SPG_1057 SPG_1058     TRUE 0.981 -13.000 0.148 1.000   NA
 5756327 5756328 SPG_1058 SPG_1059     TRUE 0.864 16.000 0.002 1.000 N NA
 5756328 5756329 SPG_1059 SPG_1060     FALSE 0.017 584.000 0.000 1.000 N NA
 5756330 5756331 SPG_1061 SPG_1062 lplA lpdA TRUE 0.833 64.000 0.200 1.000 N NA
 5756331 5756332 SPG_1062 SPG_1063 lpdA   TRUE 0.968 46.000 0.227 1.000 Y NA
 5756332 5756333 SPG_1063 SPG_1064     TRUE 0.603 218.000 0.103 0.047 Y NA
 5756333 5756334 SPG_1064 SPG_1065     TRUE 0.998 16.000 0.769 0.001 Y NA
 5756334 5756335 SPG_1065 SPG_1066     FALSE 0.075 154.000 0.000 1.000 N NA
 5756335 5756336 SPG_1066 SPG_1067   pyrC FALSE 0.037 285.000 0.000 1.000 N NA
 5756336 5756337 SPG_1067 SPG_1068 pyrC mutX TRUE 0.893 13.000 0.005 1.000 N NA
 5756337 5756338 SPG_1068 SPG_1069 mutX   TRUE 0.981 10.000 0.043 1.000 Y NA
 5756338 5756339 SPG_1069 SPG_1070     FALSE 0.078 136.000 0.000 NA   NA
 5756339 5756340 SPG_1070 SPG_1071     TRUE 0.480 58.000 0.000 NA   NA
 5756340 5756341 SPG_1071 SPG_1072     FALSE 0.024 397.000 0.000 1.000   NA
 5756341 5756342 SPG_1072 SPG_1073   phtA/B FALSE 0.020 422.000 0.000 NA   NA
 5756342 5756343 SPG_1073 SPG_1074 phtA/B ptsI FALSE 0.041 253.000 0.000 NA   NA
 5756343 5756344 SPG_1074 SPG_1075 ptsI ptsH TRUE 0.997 6.000 0.240 0.020 Y NA
 5756345 5756346 SPG_1076 SPG_1077 nrdH nrdA TRUE 0.790 81.000 0.562 1.000 N NA
 5756346 5756347 SPG_1077 SPG_1078 nrdA nrdB TRUE 0.879 188.000 0.500 0.001 Y NA
 5756347 5756348 SPG_1078 SPG_1079 nrdB   FALSE 0.195 182.000 0.056 1.000 N NA
 5756349 5756350 SPG_1080 SPG_1081   lacG TRUE 0.527 123.000 0.500 NA   NA
 5756350 5756351 SPG_1081 SPG_1082 lacG   TRUE 0.497 215.000 0.200 1.000 Y NA
 5756351 5756352 SPG_1082 SPG_1083     TRUE 0.999 0.000 0.600 0.020 Y NA
 5756352 5756353 SPG_1083 SPG_1084     TRUE 0.962 36.000 0.500 1.000   NA
 5756353 5756354 SPG_1084 SPG_1085   lacD FALSE 0.051 234.000 0.000 1.000   NA
 5756354 5756355 SPG_1085 SPG_1086 lacD lacC TRUE 0.999 2.000 0.800 0.001 Y NA
 5756355 5756356 SPG_1086 SPG_1087 lacC lacB TRUE 0.994 11.000 0.500 1.000 Y NA
 5756356 5756357 SPG_1087 SPG_1088 lacB lacA TRUE 0.995 31.000 0.333 0.001 Y NA
 5756357 5756358 SPG_1088 SPG_1089 lacA   FALSE 0.077 157.000 0.000 1.000   NA
 5756358 5756359 SPG_1089 SPG_1090     FALSE 0.059 210.000 0.000 1.000   NA
 5756359 5756360 SPG_1090 SPG_1091     TRUE 0.983 17.000 0.750 NA   NA
 5756360 5756361 SPG_1091 SPG_1092     TRUE 0.856 8.000 0.000 NA   NA
 5756361 5756362 SPG_1092 SPG_1093     TRUE 0.993 38.000 0.429 0.020 Y NA
 5756362 5756363 SPG_1093 SPG_1094     FALSE 0.016 637.000 0.000 1.000 N NA
 5756363 5756364 SPG_1094 SPG_1095     TRUE 0.327 79.000 0.002 1.000   NA
 5756364 5756365 SPG_1095 SPG_1096   recN TRUE 0.944 2.000 0.005 1.000   NA
 5756365 5756366 SPG_1096 SPG_1097 recN   TRUE 0.951 7.000 0.037 1.000 N NA
 5756366 5756367 SPG_1097 SPG_1098     TRUE 0.972 -7.000 0.048 1.000 N NA
 5756367 5756368 SPG_1098 SPG_1099   ispA TRUE 0.974 -7.000 0.058 1.000 N NA
 5756368 5756369 SPG_1099 SPG_1100 ispA xseB TRUE 0.981 -3.000 0.100 1.000 N NA
 5756369 5756370 SPG_1100 SPG_1101 xseB xseA TRUE 0.999 -22.000 0.412 0.001 Y NA
 5756370 5756371 SPG_1101 SPG_1102 xseA udk FALSE 0.131 128.000 0.002 1.000 N NA
 5756371 5756372 SPG_1102 SPG_1103 udk   FALSE 0.100 108.000 0.000 NA   NA
 5756372 5756373 SPG_1103 SPG_1104   truB FALSE 0.043 241.000 0.000 NA   NA
 5756373 5756374 SPG_1104 SPG_1105 truB   FALSE 0.112 101.000 0.000 NA   NA
 5756374 5756375 SPG_1105 SPG_1106     TRUE 0.929 12.000 0.033 NA   NA
 5756375 5756376 SPG_1106 SPG_1107     TRUE 0.287 96.000 0.027 NA   NA
 5756376 5756377 SPG_1107 SPG_1108     TRUE 0.955 22.000 0.000 0.001   NA
 5756377 5756378 SPG_1108 SPG_1109     FALSE 0.080 148.000 0.000 1.000   NA
 5756378 5756379 SPG_1109 SPG_1110     FALSE 0.041 244.000 0.000 NA N NA
 5756379 5756380 SPG_1110 SPG_1111   gyrA TRUE 0.955 0.000 0.013 NA N NA
 5756382 5756383 SPG_1113 SPG_1114     TRUE 0.589 47.000 0.000 NA   NA
 5756383 5756384 SPG_1114 SPG_1115     TRUE 0.989 2.000 0.400 NA   NA
 5756384 5756385 SPG_1115 SPG_1116     FALSE 0.157 91.000 0.000 NA   NA
 5756385 5756386 SPG_1116 SPG_1117   micB TRUE 0.967 2.000 0.038 1.000   NA
 5756386 5756387 SPG_1117 SPG_1118 micB micA TRUE 0.999 -7.000 0.597 0.011 Y NA
 5756387 5756388 SPG_1118 SPG_1119 micA mutY TRUE 0.629 56.000 0.002 1.000 N NA
 5756388 5756389 SPG_1119 SPG_1120 mutY fhs FALSE 0.029 328.000 0.000 1.000 N NA
 5756390 5756391 SPG_1121 SPG_1122 coaB coaC TRUE 0.917 12.000 0.013 1.000   NA
 5756391 5756392 SPG_1122 SPG_1123 coaC   TRUE 0.948 -16.000 0.019 NA   NA
 5756392 5756393 SPG_1123 SPG_1124     FALSE 0.084 283.000 0.026 NA   NA
 5756393 5756394 SPG_1124 SPG_1126     TRUE 0.957 12.000 0.107 NA   NA
 5756395 5756396 SPG_1125 SPG_1127     TRUE 0.533 74.000 0.021 1.000   NA
 5756396 5756397 SPG_1127 SPG_1128     TRUE 0.982 -34.000 0.014 0.011   NA
 5756397 5756398 SPG_1128 SPG_1129   uvrB TRUE 0.894 10.000 0.002 1.000 N NA
 5756398 5756399 SPG_1129 SPG_1130 uvrB   TRUE 0.337 77.000 0.002 NA   NA
 5756400 5756401 SPG_1131 SPG_1132 glnP glnQ TRUE 0.996 0.000 0.326 1.000 Y NA
 5756401 5756402 SPG_1132 SPG_1133 glnQ zwf FALSE 0.167 149.000 0.021 1.000 N NA
 5756403 5756404 SPG_1134 SPG_1135 ftsY   TRUE 0.971 4.000 0.005 0.076   NA
 5756404 5756405 SPG_1135 SPG_1136     TRUE 0.993 0.000 0.103 0.018   NA
 5756405 5756406 SPG_1136 SPG_1137     TRUE 0.955 -3.000 0.006 1.000   NA
 5756406 5756407 SPG_1137 SPG_1138   rnc TRUE 0.981 -9.000 0.120 1.000 N NA
 5756407 5756408 SPG_1138 SPG_1139 rnc   FALSE 0.059 183.000 0.000 NA   NA
 5756408 5756409 SPG_1139 SPG_1140   guaC TRUE 0.417 64.000 0.000 NA   NA
 5756409 5756410 SPG_1140 SPG_1141 guaC   FALSE 0.060 175.000 0.000 NA N NA
 5756410 5756411 SPG_1141 SPG_1142     TRUE 0.909 77.000 0.467 NA Y NA
 5756411 5756412 SPG_1142 SPG_1143     TRUE 0.673 34.000 0.000 NA   NA
 5756412 5756413 SPG_1143 SPG_1144     FALSE 0.065 166.000 0.000 NA   NA
 5756413 5756414 SPG_1144 SPG_1145     TRUE 0.900 -10.000 0.000 NA   NA
 5756414 5756415 SPG_1145 SPG_1146     FALSE 0.115 100.000 0.000 NA   NA
 5756415 5756416 SPG_1146 SPG_1147     FALSE 0.048 219.000 0.000 NA   NA
 5756416 5756417 SPG_1147 SPG_1148     TRUE 0.875 4.000 0.000 NA   NA
 5756417 5756418 SPG_1148 SPG_1149     TRUE 0.952 -3.000 0.007 NA   NA
 5756418 5756419 SPG_1149 SPG_1150     TRUE 0.565 91.000 0.000 0.001   NA
 5756419 5756420 SPG_1150 SPG_1151     TRUE 0.960 12.000 0.005 0.046   NA
 5756420 5756421 SPG_1151 SPG_1152     TRUE 0.777 19.000 0.000 NA   NA
 5756421 5756422 SPG_1152 SPG_1153     TRUE 0.824 44.000 0.040 NA   NA
 5756422 5756423 SPG_1153 SPG_1154     TRUE 0.990 -16.000 0.020 0.001   NA
 5756423 5756424 SPG_1154 SPG_1155     FALSE 0.281 93.000 0.015 NA   NA
 5756424 5756425 SPG_1155 SPG_1156   topA FALSE 0.103 106.000 0.000 NA   NA
 5756425 5756426 SPG_1156 SPG_1157 topA   FALSE 0.064 167.000 0.000 NA   NA
 5756428 5756429 SPG_1159 SPG_1160   dprA FALSE 0.124 98.000 0.000 NA   NA
 5756429 5756430 SPG_1160 SPG_1161 dprA   FALSE 0.266 86.000 0.002 1.000 N NA
 5756430 5756431 SPG_1161 SPG_1162     TRUE 0.964 12.000 0.133 1.000   NA
 5756431 5756432 SPG_1162 SPG_1163     TRUE 0.992 -10.000 0.667 NA   NA
 5756432 5756433 SPG_1163 SPG_1164     TRUE 0.936 17.000 0.074 NA N NA
 5756433 5756434 SPG_1164 SPG_1165     TRUE 0.985 5.000 0.367 1.000 N NA
 5756435 5756436 SPG_1166 SPG_1167     TRUE 0.984 10.000 0.500 NA   NA
 5756436 5756437 SPG_1167 SPG_1168     TRUE 0.998 2.000 1.000 NA Y NA
 5756438 5756439 SPG_1169 SPG_1170 carB carA TRUE 0.617 313.000 0.117 0.001 Y NA
 5756439 5756440 SPG_1170 SPG_1171 carA pyrB TRUE 0.911 50.000 0.014 1.000 Y NA
 5756440 5756441 SPG_1171 SPG_1172 pyrB pyrR TRUE 0.987 19.000 0.247 1.000 Y NA
 5756441 5756442 SPG_1172 SPG_1173 pyrR nth FALSE 0.057 210.000 0.000 1.000 N NA
 5756442 5756443 SPG_1173 SPG_1174 nth   TRUE 0.939 0.000 0.002 NA   NA
 5756444 5756445 SPG_1175 SPG_1176     FALSE 0.020 415.000 0.000 NA   NA
 5756446 5756447 SPG_1177 SPG_1178     TRUE 0.984 2.000 0.222 NA   NA
 5756448 5756449 SPG_1179 SPG_1180   pyrP FALSE 0.045 254.000 0.000 1.000 N NA
 5756450 5756451 SPG_1181 SPG_1182     TRUE 0.966 12.000 0.151 1.000   NA
 5756451 5756452 SPG_1182 SPG_1183     FALSE 0.269 91.000 0.009 NA   NA
 5756453 5756454 SPG_1184 SPG_1185     TRUE 0.933 13.000 0.035 1.000   NA
 5756455 5756456 SPG_1186 SPG_1187   rplS TRUE 0.618 43.000 0.000 NA   NA
 5756456 5756457 SPG_1187 SPG_1188 rplS   FALSE 0.150 119.000 0.004 1.000 N NA
 5756457 5756458 SPG_1188 SPG_1189     TRUE 0.997 -6.000 0.160 0.075 Y NA
 5756458 5756459 SPG_1189 SPG_1190     TRUE 0.967 -3.000 0.023 1.000 N NA
 5756459 5756460 SPG_1190 SPG_1191     FALSE 0.101 116.000 0.000 1.000 N NA
 5756461 5756462 SPG_1192 SPG_1193   rpmE TRUE 0.287 96.000 0.020 1.000   NA
 5756463 5756464 SPG_1194 SPG_1195     TRUE 0.914 -3.000 0.000 NA   NA
 5756464 5756465 SPG_1195 SPG_1196     FALSE 0.070 150.000 0.000 NA   NA
 5756467 5756468 SPG_1198 SPG_1199     TRUE 0.813 13.000 0.000 NA   NA
 5756468 5756469 SPG_1199 SPG_1200     FALSE 0.066 190.000 0.000 1.000   NA
 5756469 5756470 SPG_1200 SPG_1201     TRUE 0.983 17.000 0.750 NA   NA
 5756470 5756471 SPG_1201 SPG_1202     FALSE 0.147 93.000 0.000 NA   NA
 5756471 5756472 SPG_1202 SPG_1203     FALSE 0.039 263.000 0.000 NA   NA
 5756472 5756473 SPG_1203 SPG_1204     FALSE 0.066 162.000 0.000 NA   NA
 5756475 5756476 SPG_1206 SPG_1207     TRUE 0.879 -19.000 0.000 NA   NA
 5756476 5756477 SPG_1207 SPG_1208   ntpD FALSE 0.048 219.000 0.000 NA   NA
 5756477 5756478 SPG_1208 SPG_1209 ntpD ntpB TRUE 0.994 23.000 0.238 0.008 Y NA
 5756478 5756479 SPG_1209 SPG_1210 ntpB ntpA TRUE 0.999 1.000 0.776 0.008 Y NA
 5756479 5756480 SPG_1210 SPG_1211 ntpA ntpG TRUE 0.950 63.000 0.021 0.008 Y NA
 5756480 5756481 SPG_1211 SPG_1212 ntpG ntpC TRUE 0.996 -10.000 0.021 0.008 Y NA
 5756481 5756482 SPG_1212 SPG_1213 ntpC ntpE TRUE 0.914 65.000 0.097 0.009   NA
 5756482 5756483 SPG_1213 SPG_1214 ntpE ntpK TRUE 0.961 34.000 0.045 0.009   NA
 5756483 5756484 SPG_1214 SPG_1215 ntpK ntpI TRUE 0.995 16.000 0.848 0.009   NA
 5756484 5756485 SPG_1215 SPG_1216 ntpI   TRUE 0.964 -10.000 0.029 1.000   NA
 5756485 5756486 SPG_1216 SPG_1217     TRUE 0.960 25.000 0.333 NA   NA
 5756486 5756487 SPG_1217 SPG_1218     TRUE 0.509 157.000 0.667 NA   NA
 5756487 5756488 SPG_1218 SPG_1219   nanC TRUE 0.668 40.000 0.000 1.000   NA
 5756488 5756489 SPG_1219 SPG_1220 nanC   TRUE 0.973 2.000 0.000 NA Y NA
 5756489 5756490 SPG_1220 SPG_1221     TRUE 0.910 19.000 0.037 NA N NA
 5756490 5756491 SPG_1221 SPG_1222     TRUE 0.959 28.000 0.037 1.000 Y NA
 5756491 5756492 SPG_1222 SPG_1223     TRUE 0.983 25.000 1.000 1.000 N NA
 5756492 5756493 SPG_1223 SPG_1224     TRUE 0.955 5.000 0.040 1.000 N NA
 5756493 5756494 SPG_1224 SPG_1225     FALSE 0.021 400.000 0.000 NA   NA
 5756494 5756495 SPG_1225 SPG_1226     FALSE 0.083 127.000 0.000 NA   NA
 5756495 5756496 SPG_1226 SPG_1227     TRUE 0.804 14.000 0.000 NA   NA
 5756496 5756497 SPG_1227 SPG_1228     TRUE 0.908 -7.000 0.000 NA   NA
 5756497 5756498 SPG_1228 SPG_1229     TRUE 0.856 8.000 0.000 NA   NA
 5756498 5756499 SPG_1229 SPG_1230     TRUE 0.914 -3.000 0.000 NA   NA
 5756499 5756500 SPG_1230 SPG_1231     FALSE 0.030 309.000 0.000 NA   NA
 5756500 5756501 SPG_1231 SPG_1232     FALSE 0.022 377.000 0.000 NA   NA
 5756501 5756502 SPG_1232 SPG_1233     TRUE 0.798 15.000 0.000 NA   NA
 5756502 5756503 SPG_1233 SPG_1234     TRUE 0.914 -3.000 0.000 NA   NA
 5756503 5756504 SPG_1234 SPG_1235     TRUE 0.344 69.000 0.000 NA   NA
 5756504 5756505 SPG_1235 SPG_1236     TRUE 0.884 -16.000 0.000 NA   NA
 5756505 5756506 SPG_1236 SPG_1237     FALSE 0.164 89.000 0.000 NA   NA
 5756506 5756507 SPG_1237 SPG_1238     FALSE 0.090 117.000 0.000 NA   NA
 5756508 5756509 SPG_1239 SPG_1240     TRUE 0.969 -40.000 0.000 0.014   NA
 5756510 5756511 SPG_1241 SPG_1242 ermB   FALSE 0.044 257.000 0.000 1.000 N NA
 5756511 5756512 SPG_1242 SPG_1243     FALSE 0.070 178.000 0.000 1.000   NA
 5756512 5756513 SPG_1243 SPG_1244     TRUE 0.704 29.000 0.000 NA   NA
 5756513 5756514 SPG_1244 SPG_1245     TRUE 0.777 19.000 0.000 NA   NA
 5756514 5756515 SPG_1245 SPG_1246     FALSE 0.021 402.000 0.000 NA   NA
 5756517 5756518 SPG_1248 SPG_1249     FALSE 0.054 204.000 0.000 NA   NA
 5756518 5756519 SPG_1249 SPG_1250     TRUE 0.804 14.000 0.000 NA   NA
 5756519 5756520 SPG_1250 SPG_1251     TRUE 0.893 -13.000 0.000 NA   NA
 5756520 5756521 SPG_1251 SPG_1252     TRUE 0.868 5.000 0.000 NA   NA
 5756523 5756524 SPG_1254 SPG_1255     TRUE 0.996 -13.000 0.415 NA Y NA
 5756530 5756531 SPG_1261 SPG_1262     TRUE 0.903 -9.000 0.000 NA   NA
 5756531 5756532 SPG_1262 SPG_1263     FALSE 0.212 82.000 0.000 NA   NA
 5756532 5756533 SPG_1263 SPG_1264     TRUE 0.649 38.000 0.000 NA   NA
 5756533 5756534 SPG_1264 SPG_1265     TRUE 0.914 -3.000 0.000 NA   NA
 5756534 5756535 SPG_1265 SPG_1266     TRUE 0.560 51.000 0.000 NA   NA
 5756535 5756536 SPG_1266 SPG_1267     TRUE 0.840 10.000 0.000 NA   NA
 5756538 5756539 SPG_1269 SPG_1270     FALSE 0.022 391.000 0.000 NA   NA
 5756539 5756540 SPG_1270 SPG_1271     TRUE 0.988 14.000 1.000 NA   NA
 5756540 5756541 SPG_1271 SPG_1272     TRUE 0.850 75.000 0.667 NA   NA
 5756541 5756542 SPG_1272 SPG_1273     TRUE 0.585 48.000 0.000 NA   NA
 5756542 5756543 SPG_1273 SPG_1274     FALSE 0.069 152.000 0.000 NA   NA
 5756543 5756544 SPG_1274 SPG_1275     FALSE 0.044 239.000 0.000 NA   NA
 5756544 5756545 SPG_1275 SPG_1276     TRUE 0.821 12.000 0.000 NA   NA
 5756545 5756546 SPG_1276 SPG_1277     TRUE 0.858 -49.000 0.000 NA   NA
 5756546 5756547 SPG_1277 SPG_1278     TRUE 0.522 54.000 0.000 NA   NA
 5756547 5756548 SPG_1278 SPG_1279     TRUE 0.788 17.000 0.000 NA   NA
 5756548 5756549 SPG_1279 SPG_1280     TRUE 0.761 21.000 0.000 NA   NA
 5756549 5756550 SPG_1280 SPG_1281     TRUE 0.911 0.000 0.000 NA   NA
 5756550 5756551 SPG_1281 SPG_1282     TRUE 0.900 -10.000 0.000 NA   NA
 5756551 5756552 SPG_1282 SPG_1283     FALSE 0.015 594.000 0.000 NA   NA
 5756552 5756553 SPG_1283 SPG_1284     TRUE 0.994 2.000 1.000 NA   NA
 5756553 5756554 SPG_1284 SPG_1285     FALSE 0.014 655.000 0.000 NA   NA
 5756554 5756555 SPG_1285 SPG_1286     FALSE 0.024 354.000 0.000 NA   NA
 5756555 5756556 SPG_1286 SPG_1287     FALSE 0.032 290.000 0.000 NA   NA
 5756556 5756557 SPG_1287 SPG_1288     TRUE 0.883 3.000 0.000 NA   NA
 5756557 5756558 SPG_1288 SPG_1289     TRUE 0.813 13.000 0.000 NA   NA
 5756558 5756559 SPG_1289 SPG_1290     TRUE 0.908 -7.000 0.000 NA   NA
 5756559 5756560 SPG_1290 SPG_1291     TRUE 0.994 -16.000 1.000 NA   NA
 5756560 5756561 SPG_1291 SPG_1292     TRUE 0.552 99.000 0.333 NA   NA
 5756561 5756562 SPG_1292 SPG_1293     TRUE 0.990 -3.000 0.333 NA   NA
 5756562 5756563 SPG_1293 SPG_1294   rplL FALSE 0.055 202.000 0.000 NA   NA
 5756563 5756564 SPG_1294 SPG_1295 rplL rplJ TRUE 0.979 76.000 0.884 0.020 Y NA
 5756564 5756565 SPG_1295 SPG_1296 rplJ   FALSE 0.047 250.000 0.000 1.000 N NA
 5756565 5756566 SPG_1296 SPG_1298     FALSE 0.151 95.000 0.000 1.000 N NA
 5756566 5756567 SPG_1298 SPG_1299     TRUE 0.999 2.000 0.895 0.009 Y NA
 5756567 5756568 SPG_1299 SPG_1300     TRUE 0.743 58.000 0.035 1.000 N NA
 5756568 5756569 SPG_1300 SPG_1301   thrB FALSE 0.047 250.000 0.000 1.000 N NA
 5756569 5756570 SPG_1301 SPG_1302 thrB metM TRUE 0.988 2.000 0.036 1.000 Y NA
 5756570 5756571 SPG_1302 SPG_1303 metM   FALSE 0.190 151.000 0.044 NA N NA
 5756571 5756572 SPG_1303 SPG_1304     FALSE 0.055 200.000 0.000 NA   NA
 5756572 5756573 SPG_1304 SPG_1305     TRUE 0.956 29.000 0.333 NA   NA
 5756573 5756574 SPG_1305 SPG_1306     TRUE 0.964 16.000 0.222 NA   NA
 5756574 5756575 SPG_1306 SPG_1307     TRUE 0.987 2.000 0.250 1.000   NA
 5756575 5756576 SPG_1307 SPG_1308     TRUE 0.997 -7.000 0.667 NA Y NA
 5756576 5756577 SPG_1308 SPG_1309     FALSE 0.033 279.000 0.000 NA N NA
 5756577 5756578 SPG_1309 SPG_1310     TRUE 0.964 -3.000 0.025 NA N NA
 5756578 5756579 SPG_1310 SPG_1311     TRUE 0.989 -3.000 0.025 1.000 Y NA
 5756579 5756580 SPG_1311 SPG_1312     TRUE 0.987 -7.000 0.012 1.000 Y NA
 5756580 5756581 SPG_1312 SPG_1313     FALSE 0.222 92.000 0.003 NA   NA
 5756581 5756582 SPG_1313 SPG_1314   tyrA TRUE 0.946 11.000 0.058 NA   NA
 5756582 5756583 SPG_1314 SPG_1315 tyrA aroC TRUE 0.974 10.000 0.010 1.000 Y NA
 5756583 5756584 SPG_1315 SPG_1316 aroC aroB TRUE 0.996 10.000 0.110 0.003 Y NA
 5756584 5756585 SPG_1316 SPG_1317 aroB aroE TRUE 0.962 19.000 0.010 1.000 Y NA
 5756585 5756586 SPG_1317 SPG_1318 aroE aroD TRUE 0.976 -10.000 0.000 1.000 Y NA
 5756586 5756587 SPG_1318 SPG_1319 aroD   TRUE 0.914 -3.000 0.000 NA   NA
 5756587 5756588 SPG_1319 SPG_1320     FALSE 0.014 684.000 0.000 NA   NA
 5756588 5756589 SPG_1320 SPG_1321     TRUE 0.985 -19.000 0.341 NA   NA
 5756591 5756592 SPG_1323 SPG_1324 alaS   TRUE 0.847 22.000 0.006 NA   NA
 5756592 5756593 SPG_1324 SPG_1325   potD FALSE 0.013 783.000 0.000 NA   NA
 5756593 5756594 SPG_1325 SPG_1326 potD potC TRUE 0.998 -3.000 0.253 0.041 Y NA
 5756594 5756595 SPG_1326 SPG_1327 potC potB TRUE 0.999 -3.000 0.492 0.041 Y NA
 5756595 5756596 SPG_1327 SPG_1328 potB potA TRUE 0.999 -19.000 0.928 0.041 Y NA
 5756596 5756597 SPG_1328 SPG_1329 potA murB TRUE 0.753 58.000 0.041 1.000 N NA
 5756597 5756598 SPG_1329 SPG_1330 murB   FALSE 0.152 112.000 0.005 NA   NA
 5756598 5756599 SPG_1330 SPG_1331     TRUE 0.533 53.000 0.000 NA   NA
 5756599 5756600 SPG_1331 SPG_1332     TRUE 0.942 10.000 0.042 NA   NA
 5756601 5756602 SPG_1333 SPG_1334     TRUE 0.996 -3.000 0.231 0.011   NA
 5756603 5756604 SPG_1335 SPG_1336   phoU FALSE 0.065 157.000 0.000 NA N NA
 5756604 5756605 SPG_1336 SPG_1337 phoU   TRUE 0.992 12.000 0.413 NA Y NA
 5756605 5756606 SPG_1337 SPG_1338     TRUE 0.998 13.000 0.542 0.002 Y NA
 5756606 5756607 SPG_1338 SPG_1339     TRUE 0.998 11.000 0.490 0.004 Y NA
 5756607 5756608 SPG_1339 SPG_1340     TRUE 0.999 -10.000 0.907 0.004 Y NA
 5756608 5756609 SPG_1340 SPG_1341     TRUE 0.995 0.000 0.206 1.000 Y NA
 5756611 5756612 SPG_1343 SPG_1344     TRUE 0.986 1.000 0.229 NA N NA
 5756612 5756613 SPG_1344 SPG_1345     TRUE 0.988 -10.000 0.337 NA   NA
 5756613 5756614 SPG_1345 SPG_1346     TRUE 0.984 0.000 0.169 NA   NA
 5756614 5756615 SPG_1346 SPG_1347     FALSE 0.052 210.000 0.000 NA   NA
 5756615 5756616 SPG_1347 SPG_1348     TRUE 0.988 -10.000 0.330 NA   NA
 5756616 5756617 SPG_1348 SPG_1349     TRUE 0.948 11.000 0.055 1.000 N NA
 5756617 5756618 SPG_1349 SPG_1350     TRUE 0.963 5.000 0.060 1.000 N NA
 5756618 5756619 SPG_1350 SPG_1351     TRUE 0.377 84.000 0.021 NA   NA
 5756619 5756620 SPG_1351 SPG_1352     TRUE 0.962 16.000 0.206 NA   NA
 5756620 5756621 SPG_1352 SPG_1353     TRUE 0.976 1.000 0.079 NA   NA
 5756621 5756622 SPG_1353 SPG_1354   hprK TRUE 0.992 -7.000 0.494 1.000 N NA
 5756622 5756623 SPG_1354 SPG_1355 hprK rpsU FALSE 0.165 130.000 0.011 1.000   NA
 5756623 5756624 SPG_1355 SPG_1356 rpsU nagB FALSE 0.154 140.000 0.011 1.000   NA
 5756626 5756627 SPG_1358 SPG_1359     FALSE 0.012 1461.000 0.000 NA   NA
 5756627 5756628 SPG_1359 SPG_1360   nadE FALSE 0.049 350.000 0.007 1.000 N NA
 5756628 5756629 SPG_1360 SPG_1361 nadE pncB TRUE 0.998 -3.000 0.194 0.003 Y NA
 5756629 5756630 SPG_1361 SPG_1362 pncB   FALSE 0.200 116.000 0.021 NA   NA
 5756630 5756631 SPG_1362 SPG_1363     TRUE 0.977 -10.000 0.103 NA   NA
 5756631 5756632 SPG_1363 SPG_1364     FALSE 0.022 385.000 0.000 NA   NA
 5756632 5756633 SPG_1364 SPG_1365     TRUE 0.792 16.000 0.000 NA   NA
 5756633 5756634 SPG_1365 SPG_1366     FALSE 0.179 86.000 0.000 NA   NA
 5756634 5756635 SPG_1366 SPG_1367     FALSE 0.020 508.000 0.000 1.000   NA
 5756638 5756639 SPG_1370 SPG_1371     TRUE 0.290 184.000 0.000 0.002   NA
 5756639 5756640 SPG_1371 SPG_1372     TRUE 0.924 -3.000 0.000 1.000   NA
 5756643 5756644 SPG_1375 SPG_1376     TRUE 0.954 9.000 0.047 1.000   NA
 5756644 5756645 SPG_1376 SPG_1377     TRUE 0.989 -3.000 0.326 NA   NA
 5756645 5756646 SPG_1377 SPG_1378     FALSE 0.196 84.000 0.000 NA   NA
 5756646 5756647 SPG_1378 SPG_1379     TRUE 0.981 2.000 0.143 1.000   NA
 5756647 5756648 SPG_1379 SPG_1380     FALSE 0.105 104.000 0.000 NA   NA
 5756648 5756649 SPG_1380 SPG_1381     TRUE 0.954 1.000 0.013 NA   NA
 5756650 5756651 SPG_1382 SPG_1383 defB   TRUE 0.896 45.000 0.002 1.000 Y NA
 5756652 5756653 SPG_1384 SPG_1385 trxB   TRUE 0.764 66.000 0.117 NA   NA
 5756653 5756654 SPG_1385 SPG_1386     TRUE 0.751 78.000 0.364 NA   NA
 5756654 5756655 SPG_1386 SPG_1387     TRUE 0.996 0.000 0.310 1.000 Y NA
 5756655 5756656 SPG_1387 SPG_1388     FALSE 0.135 158.000 0.010 1.000 N NA
 5756656 5756657 SPG_1388 SPG_1389     TRUE 0.940 13.000 0.050 1.000 N NA
 5756657 5756658 SPG_1389 SPG_1390     TRUE 0.964 0.000 0.019 1.000   NA
 5756659 5756660 SPG_1391 SPG_1392     TRUE 0.985 -3.000 0.146 1.000   NA
 5756661 5756662 SPG_1393 SPG_1394 pdxT pdxS TRUE 0.996 1.000 0.488 NA Y NA
 5756662 5756663 SPG_1394 SPG_1395 pdxS   FALSE 0.125 152.000 0.005 1.000   NA
 5756663 5756664 SPG_1395 SPG_1396     TRUE 0.572 50.000 0.000 NA   NA
 5756665 5756666 SPG_1397 SPG_1398     TRUE 0.914 -3.000 0.000 NA   NA
 5756666 5756667 SPG_1398 SPG_1399     TRUE 0.862 60.000 0.243 NA   NA
 5756667 5756668 SPG_1399 SPG_1400     TRUE 0.979 19.000 0.588 NA   NA
 5756669 5756670 SPG_1401 SPG_1402   glyS TRUE 0.805 42.000 0.020 NA   NA
 5756670 5756671 SPG_1402 SPG_1403 glyS glyQ TRUE 0.847 260.000 0.651 0.001 Y NA
 5756671 5756672 SPG_1403 SPG_1404 glyQ   FALSE 0.089 194.000 0.003 NA   NA
 5756672 5756673 SPG_1404 SPG_1405     FALSE 0.036 273.000 0.000 NA   NA
 5756673 5756674 SPG_1405 SPG_1406   pgdA FALSE 0.046 256.000 0.000 1.000   NA
 5756674 5756675 SPG_1406 SPG_1407 pgdA   FALSE 0.019 436.000 0.000 NA   NA
 5756676 5756677 SPG_1408 SPG_1409     TRUE 0.987 -3.000 0.200 1.000   NA
 5756678 5756679 SPG_1410 SPG_1411     TRUE 0.686 32.000 0.000 NA   NA
 5756679 5756680 SPG_1411 SPG_1412     TRUE 0.870 -27.000 0.000 NA   NA
 5756680 5756681 SPG_1412 SPG_1413     FALSE 0.022 384.000 0.000 NA   NA
 5756681 5756682 SPG_1413 SPG_1414     FALSE 0.026 343.000 0.000 NA   NA
 5756682 5756683 SPG_1414 SPG_1415     FALSE 0.019 446.000 0.000 NA   NA
 5756683 5756684 SPG_1415 SPG_1416     FALSE 0.058 213.000 0.000 1.000   NA
 5756684 5756685 SPG_1416 SPG_1417     TRUE 0.860 -42.000 0.000 NA   NA
 5756685 5756686 SPG_1417 SPG_1418     FALSE 0.097 111.000 0.000 NA   NA
 5756686 5756687 SPG_1418 SPG_1419     FALSE 0.018 466.000 0.000 NA   NA
 5756687 5756688 SPG_1419 SPG_1420     TRUE 0.893 -13.000 0.000 NA   NA
 5756689 5756690 SPG_1421 SPG_1422     FALSE 0.263 111.000 0.049 NA   NA
 5756691 5756692 SPG_1423 SPG_1424     TRUE 0.987 13.000 0.154 1.000 Y NA
 5756692 5756693 SPG_1424 SPG_1425     TRUE 0.988 10.000 0.130 1.000 Y NA
 5756693 5756694 SPG_1425 SPG_1426     FALSE 0.155 146.000 0.013 1.000   NA
 5756694 5756695 SPG_1426 SPG_1427     TRUE 0.777 75.000 0.324 NA   NA
 5756697 5756698 SPG_1429 SPG_1430     TRUE 0.998 11.000 0.837 0.007 Y NA
 5756698 5756699 SPG_1430 SPG_1431     TRUE 0.915 86.000 0.724 0.007   NA
 5756699 5756700 SPG_1431 SPG_1432     TRUE 0.985 -13.000 0.005 0.007   NA
 5756700 5756701 SPG_1432 SPG_1433     TRUE 0.998 16.000 0.846 0.007 Y NA
 5756701 5756702 SPG_1433 SPG_1434     TRUE 0.998 15.000 0.864 0.007 Y NA
 5756702 5756703 SPG_1434 SPG_1435   atpB TRUE 0.998 0.000 0.222 0.007 Y NA
 5756703 5756704 SPG_1435 SPG_1436 atpB atpA TRUE 0.991 14.000 0.032 0.009 Y NA
 5756704 5756705 SPG_1436 SPG_1437 atpA atpC TRUE 0.995 35.000 0.557 0.009 Y NA
 5756705 5756706 SPG_1437 SPG_1438 atpC   FALSE 0.283 75.000 0.000 NA   NA
 5756706 5756707 SPG_1438 SPG_1439     TRUE 0.751 22.000 0.000 NA   NA
 5756707 5756708 SPG_1439 SPG_1440     FALSE 0.026 374.000 0.000 1.000 N NA
 5756708 5756709 SPG_1440 SPG_1441   greA FALSE 0.026 373.000 0.000 1.000 N NA
 5756709 5756710 SPG_1441 SPG_1442 greA   TRUE 0.661 71.000 0.079 NA   NA
 5756710 5756711 SPG_1442 SPG_1443     TRUE 0.589 81.000 0.120 NA   NA
 5756711 5756712 SPG_1443 SPG_1444     TRUE 0.991 -3.000 0.037 0.010   NA
 5756712 5756713 SPG_1444 SPG_1445   murC TRUE 0.927 10.000 0.014 1.000   NA
 5756713 5756714 SPG_1445 SPG_1446 murC   TRUE 0.912 11.000 0.013 NA   NA
 5756714 5756715 SPG_1446 SPG_1447     TRUE 0.890 48.000 0.151 NA   NA
 5756715 5756716 SPG_1447 SPG_1449     FALSE 0.161 93.000 0.000 1.000 N NA
 5756716 5756717 SPG_1449 SPG_1450   metB TRUE 0.995 8.000 0.082 0.011 Y NA
 5756717 5756718 SPG_1450 SPG_1451 metB   FALSE 0.077 157.000 0.000 1.000   NA
 5756718 5756719 SPG_1451 SPG_1452     TRUE 0.696 36.000 0.000 1.000   NA
 5756719 5756720 SPG_1452 SPG_1453     TRUE 0.969 9.000 0.000 0.008   NA
 5756720 5756721 SPG_1453 SPG_1454     FALSE 0.067 413.000 0.000 0.055   NA
 5756721 5756722 SPG_1454 SPG_1455     FALSE 0.062 203.000 0.000 1.000   NA
 5756724 5756725 SPG_1457 SPG_1458     TRUE 0.455 106.000 0.231 NA   NA
 5756725 5756726 SPG_1458 SPG_1459     TRUE 0.928 37.000 0.208 NA   NA
 5756726 5756727 SPG_1459 SPG_1460   ppa FALSE 0.267 87.000 0.005 NA   NA
 5756727 5756728 SPG_1460 SPG_1461 ppa   TRUE 0.823 28.000 0.005 1.000 N NA
 5756728 5756729 SPG_1461 SPG_1462     TRUE 0.985 -10.000 0.209 1.000   NA
 5756729 5756730 SPG_1462 SPG_1463     TRUE 0.692 54.000 0.006 1.000   NA
 5756730 5756731 SPG_1463 SPG_1464     TRUE 0.982 2.000 0.151 1.000   NA
 5756731 5756732 SPG_1464 SPG_1465   rpsR FALSE 0.036 295.000 0.000 1.000   NA
 5756732 5756733 SPG_1465 SPG_1466 rpsR   TRUE 0.832 32.000 0.012 1.000 N NA
 5756733 5756734 SPG_1466 SPG_1467   rpsF TRUE 0.911 12.000 0.012 1.000 N NA
 5756734 5756735 SPG_1467 SPG_1468 rpsF asnS FALSE 0.250 153.000 0.000 1.000 Y NA
 5756735 5756736 SPG_1468 SPG_1469 asnS   TRUE 0.882 19.000 0.013 NA   NA
 5756736 5756737 SPG_1469 SPG_1470   aspC TRUE 0.968 -7.000 0.042 NA   NA
 5756737 5756738 SPG_1470 SPG_1471 aspC   TRUE 0.986 -3.000 0.205 NA   NA
 5756738 5756739 SPG_1471 SPG_1472     TRUE 0.376 67.000 0.000 NA   NA
 5756741 5756742 SPG_1474 SPG_1475     TRUE 0.332 79.000 0.004 NA   NA
 5756742 5756743 SPG_1475 SPG_1476     FALSE 0.159 167.000 0.030 NA   NA
 5756743 5756744 SPG_1476 SPG_1477   defA TRUE 0.925 12.000 0.028 NA   NA
 5756744 5756745 SPG_1477 SPG_1478 defA   FALSE 0.088 116.000 0.000 NA N NA
 5756745 5756746 SPG_1478 SPG_1479     TRUE 0.807 13.000 0.000 NA N NA
 5756748 5756749 SPG_1481 SPG_1482     TRUE 0.976 -3.000 0.056 1.000   NA
 5756749 5756750 SPG_1482 SPG_1483   dapB TRUE 0.963 -3.000 0.015 1.000 N NA
 5756750 5756751 SPG_1483 SPG_1484 dapB   FALSE 0.058 277.000 0.004 NA   NA
 5756751 5756752 SPG_1484 SPG_1485     TRUE 0.979 2.000 0.139 NA   NA
 5756752 5756753 SPG_1485 SPG_1486   glmM TRUE 0.424 74.000 0.003 1.000   NA
 5756753 5756754 SPG_1486 SPG_1487 glmM   TRUE 0.940 24.000 0.150 NA   NA
 5756754 5756755 SPG_1487 SPG_1488     TRUE 0.990 -13.000 0.502 NA   NA
 5756757 5756758 SPG_1490 SPG_1491     TRUE 0.992 -3.000 0.470 NA   NA
 5756758 5756759 SPG_1491 SPG_1492     TRUE 0.986 -3.000 0.214 NA   NA
 5756759 5756760 SPG_1492 SPG_1493     TRUE 0.803 52.000 0.051 NA   NA
 5756760 5756761 SPG_1493 SPG_1494   ysxC TRUE 0.881 11.000 0.002 NA   NA
 5756761 5756762 SPG_1494 SPG_1495 ysxC clpX TRUE 0.952 9.000 0.043 1.000   NA
 5756762 5756763 SPG_1495 SPG_1496 clpX   TRUE 0.821 32.000 0.012 NA   NA
 5756763 5756764 SPG_1496 SPG_1497   folA TRUE 0.965 0.000 0.030 NA   NA
 5756764 5756765 SPG_1497 SPG_1498 folA   FALSE 0.141 130.000 0.005 1.000 N NA
 5756765 5756766 SPG_1498 SPG_1499   lytC FALSE 0.020 496.000 0.000 1.000   NA
 5756766 5756767 SPG_1499 SPG_1500 lytC tpiA TRUE 0.499 71.000 0.007 1.000   NA
 5756767 5756768 SPG_1500 SPG_1501 tpiA   FALSE 0.207 98.000 0.007 NA N NA
 5756768 5756769 SPG_1501 SPG_1502   metA TRUE 0.933 9.000 0.021 NA N NA
 5756769 5756770 SPG_1502 SPG_1503 metA   FALSE 0.119 182.000 0.009 1.000 N NA
 5756770 5756771 SPG_1503 SPG_1504     FALSE 0.260 87.000 0.002 1.000 N NA
 5756771 5756772 SPG_1504 SPG_1505     FALSE 0.019 501.000 0.000 1.000 N NA
 5756774 5756775 SPG_1507 SPG_1508     FALSE 0.212 82.000 0.000 NA   NA
 5756775 5756776 SPG_1508 SPG_1509   codY TRUE 0.979 0.000 0.083 1.000 N NA
 5756776 5756777 SPG_1509 SPG_1510 codY   FALSE 0.153 264.000 0.000 1.000 Y NA
 5756777 5756778 SPG_1510 SPG_1511     FALSE 0.054 199.000 0.000 NA N NA
 5756779 5756780 SPG_1512 SPG_1513     FALSE 0.227 99.000 0.010 1.000 N NA
 5756780 5756781 SPG_1513 SPG_1514     TRUE 0.994 0.000 0.796 1.000   NA
 5756781 5756782 SPG_1514 SPG_1515   pepQ FALSE 0.096 126.000 0.000 1.000   NA
 5756783 5756784 SPG_1516 SPG_1517     TRUE 0.911 0.000 0.000 NA   NA
 5756784 5756785 SPG_1517 SPG_1518     FALSE 0.077 137.000 0.000 NA   NA
 5756787 5756788 SPG_1520 SPG_1521     TRUE 0.983 -22.000 0.276 NA   NA
 5756788 5756789 SPG_1521 SPG_1522     TRUE 0.972 -10.000 0.058 1.000 N NA
 5756791 5756792 SPG_1523 SPG_1525     FALSE 0.044 240.000 0.000 NA   NA
 5756792 5756793 SPG_1525 SPG_1526     TRUE 0.940 3.000 0.011 NA   NA
 5756793 5756794 SPG_1526 SPG_1527   cmk FALSE 0.128 130.000 0.002 1.000 N NA
 5756794 5756795 SPG_1527 SPG_1528 cmk   TRUE 0.923 9.000 0.012 NA   NA
 5756797 5756798 SPG_1530 SPG_1531     TRUE 0.987 2.000 0.030 NA Y NA
 5756798 5756799 SPG_1531 SPG_1532     FALSE 0.028 346.000 0.000 1.000 N NA
 5756799 5756800 SPG_1532 SPG_1533     TRUE 0.903 17.000 0.021 NA   NA
 5756800 5756801 SPG_1533 SPG_1534     TRUE 0.986 -13.000 0.283 NA   NA
 5756801 5756802 SPG_1534 SPG_1535     FALSE 0.110 102.000 0.000 NA   NA
 5756804 5756805 SPG_1537 SPG_1538   rpsO FALSE 0.013 813.000 0.000 NA N NA
 5756805 5756806 SPG_1538 SPG_1539 rpsO   FALSE 0.040 279.000 0.000 1.000   NA
 5756807 5756808 SPG_1540 SPG_1541     FALSE 0.014 674.000 0.000 NA   NA
 5756808 5756809 SPG_1541 SPG_1542   thrS FALSE 0.142 160.000 0.018 NA   NA
 5756810 5756811 SPG_1543 SPG_1544     TRUE 0.998 -7.000 0.812 1.000 Y NA
 5756813 5756814 SPG_1546 SPG_1547     TRUE 0.359 68.000 0.000 NA   NA
 5756814 5756815 SPG_1547 SPG_1548     TRUE 0.843 76.000 0.667 NA   NA
 5756816 5756817 SPG_1549 SPG_1550 dtxR   TRUE 0.879 -19.000 0.000 NA   NA
 5756817 5756818 SPG_1550 SPG_1551     TRUE 0.718 26.000 0.000 NA   NA
 5756818 5756819 SPG_1551 SPG_1552     FALSE 0.110 102.000 0.000 NA   NA
 5756819 5756820 SPG_1552 SPG_1553     FALSE 0.035 274.000 0.000 NA   NA
 5756821 5756822 SPG_1554 SPG_1555     TRUE 0.938 30.000 0.177 1.000 N NA
 5756825 5756826 SPG_1558 SPG_1559 psaB psaC TRUE 0.991 -3.000 0.043 1.000 Y NA
 5756826 5756827 SPG_1559 SPG_1560 psaC psaA TRUE 0.955 32.000 0.038 1.000 Y NA
 5756827 5756828 SPG_1560 SPG_1561 psaA   FALSE 0.159 123.000 0.007 1.000 N NA
 5756829 5756830 SPG_1562 SPG_1563     TRUE 0.990 2.000 0.438 1.000 N NA
 5756830 5756831 SPG_1563 SPG_1564     FALSE 0.048 250.000 0.000 1.000   NA
 5756831 5756832 SPG_1564 SPG_1565   gpmA TRUE 0.569 53.000 0.000 1.000   NA
 5756832 5756833 SPG_1565 SPG_1566 gpmA   TRUE 0.560 51.000 0.000 NA   NA
 5756833 5756834 SPG_1566 SPG_1567     FALSE 0.031 296.000 0.000 NA   NA
 5756834 5756835 SPG_1567 SPG_1568   ileS FALSE 0.023 409.000 0.000 1.000   NA
 5756835 5756836 SPG_1568 SPG_1569 ileS   FALSE 0.041 253.000 0.000 NA   NA
 5756836 5756837 SPG_1569 SPG_1570     TRUE 0.877 -21.000 0.000 NA   NA
 5756837 5756838 SPG_1570 SPG_1571     TRUE 0.987 9.000 0.579 NA   NA
 5756838 5756839 SPG_1571 SPG_1572     TRUE 0.990 -3.000 0.287 1.000   NA
 5756839 5756840 SPG_1572 SPG_1573     TRUE 0.990 0.000 0.370 NA   NA
 5756840 5756841 SPG_1573 SPG_1574     TRUE 0.971 10.000 0.194 NA   NA
 5756841 5756842 SPG_1574 SPG_1575   ftsZ TRUE 0.947 5.000 0.030 NA   NA
 5756842 5756843 SPG_1575 SPG_1576 ftsZ ftsA TRUE 0.991 17.000 0.460 1.000 Y NA
 5756843 5756844 SPG_1576 SPG_1577 ftsA   FALSE 0.048 219.000 0.000 NA   NA
 5756844 5756845 SPG_1577 SPG_1578     TRUE 0.297 91.000 0.016 NA   NA
 5756845 5756846 SPG_1578 SPG_1579   murF TRUE 0.953 -13.000 0.016 1.000 N NA
 5756846 5756847 SPG_1579 SPG_1580 murF ddlA TRUE 0.888 84.000 0.046 0.007 Y NA
 5756847 5756848 SPG_1580 SPG_1581 ddlA recR FALSE 0.126 176.000 0.010 1.000 N NA
 5756848 5756849 SPG_1581 SPG_1582 recR   TRUE 0.918 11.000 0.013 1.000 N NA
 5756851 5756852 SPG_1584 SPG_1585     TRUE 0.932 18.000 0.054 1.000 N NA
 5756852 5756853 SPG_1585 SPG_1586     TRUE 0.380 169.000 0.333 NA   NA
 5756853 5756854 SPG_1586 SPG_1587     FALSE 0.033 286.000 0.000 NA   NA
 5756854 5756855 SPG_1587 SPG_1588     FALSE 0.028 316.000 0.000 NA   NA
 5756855 5756856 SPG_1588 SPG_1589     TRUE 0.432 273.000 0.250 NA Y NA
 5756856 5756857 SPG_1589 SPG_1590     TRUE 0.998 16.000 1.000 0.039 Y NA
 5756857 5756858 SPG_1590 SPG_1591     TRUE 0.340 232.000 0.000 0.039 Y NA
 5756858 5756859 SPG_1591 SPG_1592     TRUE 0.296 125.000 0.000 1.000 Y NA
 5756859 5756860 SPG_1592 SPG_1593   nanE TRUE 0.982 19.000 0.132 1.000 Y NA
 5756860 5756861 SPG_1593 SPG_1594 nanE   FALSE 0.071 174.000 0.000 1.000   NA
 5756861 5756862 SPG_1594 SPG_1595   nanB TRUE 0.976 12.000 0.273 1.000   NA
 5756862 5756863 SPG_1595 SPG_1596 nanB   TRUE 0.943 18.000 0.000 1.000 Y NA
 5756863 5756864 SPG_1596 SPG_1597     TRUE 0.998 0.000 0.300 0.039 Y NA
 5756864 5756865 SPG_1597 SPG_1598     TRUE 0.920 79.000 0.180 0.039 Y NA
 5756865 5756866 SPG_1598 SPG_1599     TRUE 0.974 19.000 0.060 NA Y NA
 5756866 5756867 SPG_1599 SPG_1600   nanA FALSE 0.050 1016.000 0.000 NA Y NA
 5756867 5756868 SPG_1600 SPG_1601 nanA   FALSE 0.024 358.000 0.000 NA   NA
 5756868 5756869 SPG_1601 SPG_1602   axe1 FALSE 0.013 895.000 0.000 NA   NA
 5756869 5756870 SPG_1602 SPG_1603 axe1 recG FALSE 0.031 316.000 0.000 1.000 N NA
 5756870 5756871 SPG_1603 SPG_1604 recG   TRUE 0.939 19.000 0.078 1.000 N NA
 5756871 5756872 SPG_1604 SPG_1605   acpS TRUE 0.977 -10.000 0.093 1.000 N NA
 5756872 5756873 SPG_1605 SPG_1606 acpS   TRUE 0.749 45.000 0.007 1.000 N NA
 5756873 5756874 SPG_1606 SPG_1607     TRUE 0.999 2.000 0.750 0.001 Y NA
 5756874 5756875 SPG_1607 SPG_1608   secA TRUE 0.439 81.000 0.025 1.000 N NA
 5756875 5756876 SPG_1608 SPG_1609 secA   FALSE 0.149 146.000 0.017 NA   NA
 5756876 5756877 SPG_1609 SPG_1610     TRUE 0.829 11.000 0.000 NA   NA
 5756877 5756878 SPG_1610 SPG_1611     TRUE 0.875 4.000 0.000 NA   NA
 5756878 5756879 SPG_1611 SPG_1612     TRUE 0.908 -7.000 0.000 NA   NA
 5756879 5756880 SPG_1612 SPG_1613     FALSE 0.059 185.000 0.000 NA   NA
 5756880 5756881 SPG_1613 SPG_1614     FALSE 0.074 140.000 0.000 NA   NA
 5756881 5756882 SPG_1614 SPG_1615   engA FALSE 0.230 88.000 0.002 NA   NA
 5756882 5756883 SPG_1615 SPG_1616 engA   TRUE 0.889 14.000 0.005 1.000   NA
 5756883 5756884 SPG_1616 SPG_1617     TRUE 0.974 -3.000 0.048 1.000 N NA
 5756884 5756885 SPG_1617 SPG_1618     TRUE 0.998 1.000 0.817 NA Y NA
 5756885 5756886 SPG_1618 SPG_1619     TRUE 0.979 1.000 0.109 NA N NA
 5756887 5756888 SPG_1620 SPG_1621     TRUE 0.986 5.000 0.412 1.000 N NA
 5756888 5756889 SPG_1621 SPG_1622     TRUE 0.977 17.000 0.471 NA   NA
 5756890 5756891 SPG_1623 SPG_1624     TRUE 0.975 -3.000 0.059 NA   NA
 5756893 5756894 SPG_1626 SPG_1627     TRUE 0.614 149.000 0.235 1.000 Y NA
 5756894 5756895 SPG_1627 SPG_1628     FALSE 0.083 127.000 0.000 NA   NA
 5756896 5756897 SPG_1629 SPG_1630     TRUE 0.990 -19.000 0.571 1.000 N NA
 5756898 5756899 SPG_1631 SPG_1632 mvaA mvaS TRUE 0.995 0.000 0.183 1.000 Y NA
 5756899 5756900 SPG_1632 SPG_1633 mvaS   FALSE 0.101 107.000 0.000 NA   NA
 5756900 5756901 SPG_1633 SPG_1634     FALSE 0.089 119.000 0.000 NA   NA
 5756901 5756902 SPG_1634 SPG_1635     TRUE 0.406 65.000 0.000 NA   NA
 5756902 5756903 SPG_1635 SPG_1636     TRUE 0.989 2.000 0.400 NA   NA
 5756903 5756904 SPG_1636 SPG_1637     FALSE 0.169 115.000 0.010 NA   NA
 5756904 5756905 SPG_1637 SPG_1638     TRUE 0.976 20.000 0.019 0.001   NA
 5756905 5756906 SPG_1638 SPG_1639     TRUE 0.994 -3.000 0.704 1.000   NA
 5756906 5756907 SPG_1639 SPG_1640   sun TRUE 0.944 15.000 0.074 1.000 N NA
 5756907 5756908 SPG_1640 SPG_1641 sun fmt TRUE 0.996 -7.000 0.305 1.000 Y NA
 5756908 5756909 SPG_1641 SPG_1642 fmt   TRUE 0.941 13.000 0.052 1.000 N NA
 5756909 5756910 SPG_1642 SPG_1643   rpoZ TRUE 0.820 66.000 0.032 0.061 N NA
 5756910 5756911 SPG_1643 SPG_1644 rpoZ gmk TRUE 0.967 28.000 0.471 1.000 N NA
 5756911 5756912 SPG_1644 SPG_1645 gmk   FALSE 0.163 130.000 0.010 1.000   NA
 5756912 5756913 SPG_1645 SPG_1646     FALSE 0.026 344.000 0.000 NA   NA
 5756913 5756914 SPG_1646 SPG_1647     FALSE 0.025 348.000 0.000 NA   NA
 5756914 5756915 SPG_1647 SPG_1648     TRUE 0.959 10.000 0.094 NA   NA
 5756915 5756916 SPG_1648 SPG_1649     TRUE 0.344 103.000 0.085 NA   NA
 5756916 5756917 SPG_1649 SPG_1650     TRUE 0.892 13.000 0.008 NA   NA
 5756917 5756918 SPG_1650 SPG_1651     TRUE 0.964 1.000 0.024 1.000 N NA
 5756918 5756919 SPG_1651 SPG_1652   nadD TRUE 0.995 0.000 0.199 1.000 Y NA
 5756919 5756920 SPG_1652 SPG_1653 nadD   TRUE 0.871 52.000 0.150 NA N NA
 5756920 5756921 SPG_1653 SPG_1654     FALSE 0.172 214.000 0.068 NA   NA
 5756921 5756922 SPG_1654 SPG_1655     TRUE 0.990 3.000 0.555 NA   NA
 5756922 5756923 SPG_1655 SPG_1656     TRUE 0.898 15.000 0.015 NA   NA
 5756923 5756924 SPG_1656 SPG_1657     TRUE 0.897 57.000 0.059 0.068   NA
 5756925 5756926 SPG_1658 SPG_1659     TRUE 0.871 26.000 0.026 NA   NA
 5756926 5756927 SPG_1659 SPG_1660     TRUE 0.549 68.000 0.013 NA   NA
 5756927 5756928 SPG_1660 SPG_1661     FALSE 0.072 145.000 0.000 NA   NA
 5756928 5756929 SPG_1661 SPG_1662     TRUE 0.428 99.000 0.143 NA   NA
 5756929 5756930 SPG_1662 SPG_1663   trx TRUE 0.973 17.000 0.364 NA   NA
 5756930 5756931 SPG_1663 SPG_1664 trx   FALSE 0.034 305.000 0.000 1.000   NA
 5756932 5756933 SPG_1665 SPG_1666     FALSE 0.133 146.000 0.010 NA   NA
 5756933 5756934 SPG_1666 SPG_1667     TRUE 0.359 68.000 0.000 NA   NA
 5756934 5756935 SPG_1667 SPG_1668     TRUE 0.741 23.000 0.000 NA   NA
 5756935 5756936 SPG_1668 SPG_1669     TRUE 0.890 11.000 0.004 NA   NA
 5756936 5756937 SPG_1669 SPG_1670     TRUE 0.941 2.000 0.006 NA   NA
 5756937 5756938 SPG_1670 SPG_1671     TRUE 0.994 -7.000 0.059 0.002   NA
 5756938 5756939 SPG_1671 SPG_1672     FALSE 0.089 135.000 0.000 1.000   NA
 5756939 5756940 SPG_1672 SPG_1673     TRUE 0.894 -19.000 0.000 1.000   NA
 5756940 5756941 SPG_1673 SPG_1674     TRUE 0.777 19.000 0.000 NA   NA
 5756941 5756942 SPG_1674 SPG_1675     FALSE 0.032 291.000 0.000 NA   NA
 5756942 5756943 SPG_1675 SPG_1676     TRUE 0.943 37.000 0.308 NA   NA
 5756943 5756944 SPG_1676 SPG_1677     FALSE 0.077 137.000 0.000 NA   NA
 5756944 5756945 SPG_1677 SPG_1678     FALSE 0.054 204.000 0.000 NA   NA
 5756946 5756947 SPG_1679 SPG_1680     FALSE 0.038 265.000 0.000 NA   NA
 5756948 5756949 SPG_1681 SPG_1682     TRUE 0.992 10.000 0.273 1.000 Y NA
 5756949 5756950 SPG_1682 SPG_1683     TRUE 0.999 2.000 0.917 0.039 Y NA
 5756950 5756951 SPG_1683 SPG_1684     TRUE 0.942 96.000 0.917 0.039 Y NA
 5756951 5756952 SPG_1684 SPG_1685     TRUE 0.474 128.000 0.364 1.000 N NA
 5756952 5756953 SPG_1685 SPG_1686   mgrA FALSE 0.024 362.000 0.000 NA   NA
 5756954 5756955 SPG_1687 SPG_1688     TRUE 0.629 84.000 0.214 NA   NA
 5756955 5756956 SPG_1688 SPG_1689     TRUE 0.962 12.000 0.143 NA   NA
 5756956 5756957 SPG_1689 SPG_1690     TRUE 0.840 39.000 0.036 NA   NA
 5756957 5756958 SPG_1690 SPG_1691     TRUE 0.979 31.000 1.000 NA   NA
 5756959 5756960 SPG_1692 SPG_1693     FALSE 0.048 218.000 0.000 NA   NA
 5756960 5756961 SPG_1693 SPG_1694     TRUE 0.798 15.000 0.000 NA   NA
 5756961 5756962 SPG_1694 SPG_1695     TRUE 0.856 -94.000 0.000 NA   NA
 5756962 5756963 SPG_1695 SPG_1696     TRUE 0.859 -46.000 0.000 NA   NA
 5756963 5756964 SPG_1696 SPG_1697     TRUE 0.984 10.000 0.500 NA   NA
 5756964 5756965 SPG_1697 SPG_1698     TRUE 0.996 17.000 0.429 0.018 Y NA
 5756965 5756966 SPG_1698 SPG_1699     TRUE 0.820 15.000 0.000 1.000   NA
 5756966 5756967 SPG_1699 SPG_1700     TRUE 0.893 -13.000 0.000 NA   NA
 5756967 5756968 SPG_1700 SPG_1701     TRUE 0.883 3.000 0.000 NA   NA
 5756972 5756973 SPG_1705 SPG_1706     TRUE 0.961 15.000 0.182 NA   NA
 5756973 5756974 SPG_1706 SPG_1707   trpA FALSE 0.030 302.000 0.000 NA   NA
 5756974 5756975 SPG_1707 SPG_1708 trpA trpB TRUE 0.999 -7.000 0.248 0.001 Y NA
 5756975 5756976 SPG_1708 SPG_1709 trpB trpF TRUE 0.998 -22.000 0.375 0.002 Y NA
 5756976 5756977 SPG_1709 SPG_1710 trpF trpC TRUE 0.998 -13.000 0.264 0.002 Y NA
 5756977 5756978 SPG_1710 SPG_1711 trpC trpD TRUE 0.995 -3.000 0.216 1.000 Y NA
 5756978 5756979 SPG_1711 SPG_1712 trpD trpG TRUE 0.975 11.000 0.018 1.000 Y NA
 5756979 5756980 SPG_1712 SPG_1713 trpG trpE TRUE 0.999 -3.000 0.321 0.001 Y NA
 5756980 5756981 SPG_1713 SPG_1714 trpE   FALSE 0.013 1321.000 0.000 1.000 N NA
 5756981 5756982 SPG_1714 SPG_1715     FALSE 0.018 572.000 0.000 1.000   NA
 5756982 5756983 SPG_1715 SPG_1716     TRUE 0.962 3.000 0.000 0.068   NA
 5756983 5756984 SPG_1716 SPG_1717     TRUE 0.993 12.000 0.545 0.039 N NA
 5756984 5756985 SPG_1717 SPG_1718     TRUE 0.727 104.000 0.364 0.039 N NA
 5756985 5756986 SPG_1718 SPG_1719     TRUE 0.755 25.000 0.000 1.000   NA
 5756986 5756987 SPG_1719 SPG_1720     FALSE 0.014 1022.000 0.000 1.000   NA
 5756987 5756988 SPG_1720 SPG_1721     FALSE 0.052 1163.000 0.000 1.000 Y NA
 5756988 5756989 SPG_1721 SPG_1722     TRUE 0.977 43.000 0.382 NA Y NA
 5756989 5756990 SPG_1722 SPG_1723     FALSE 0.133 173.000 0.018 NA N NA
 5756990 5756991 SPG_1723 SPG_1724     TRUE 0.999 -10.000 0.911 0.008 Y NA
 5756991 5756992 SPG_1724 SPG_1725     FALSE 0.117 206.000 0.018 NA   NA
 5756992 5756993 SPG_1725 SPG_1726     TRUE 0.308 72.000 0.000 NA   NA
 5756993 5756994 SPG_1726 SPG_1727     TRUE 0.862 -40.000 0.000 NA   NA
 5756995 5756996 SPG_1728 SPG_1729 exoA   TRUE 0.821 12.000 0.000 NA   NA
 5756996 5756997 SPG_1729 SPG_1730     FALSE 0.097 111.000 0.000 NA   NA
 5756997 5756998 SPG_1730 SPG_1731   xpt FALSE 0.013 878.000 0.000 NA   NA
 5756998 5756999 SPG_1731 SPG_1732 xpt   TRUE 0.991 0.000 0.046 1.000 Y NA
 5757000 5757001 SPG_1733 SPG_1734 dpnB dpnA TRUE 0.994 -13.000 0.347 0.060   NA
 5757001 5757002 SPG_1734 SPG_1735 dpnA dpnM TRUE 0.990 26.000 0.058 0.003 Y NA
 5757002 5757003 SPG_1735 SPG_1736 dpnM   FALSE 0.136 157.000 0.015 NA N NA
 5757003 5757004 SPG_1736 SPG_1737     TRUE 0.555 70.000 0.024 NA N NA
 5757004 5757005 SPG_1737 SPG_1738     TRUE 0.994 19.000 0.107 0.002 Y NA
 5757007 5757008 SPG_1740 SPG_1741     TRUE 0.981 -3.000 0.000 0.013   NA
 5757008 5757009 SPG_1741 SPG_1742     TRUE 0.918 1.000 0.000 1.000   NA
 5757009 5757010 SPG_1742 SPG_1743     FALSE 0.048 244.000 0.000 1.000 N NA
 5757012 5757013 SPG_1745 SPG_1746     FALSE 0.084 345.000 0.000 0.052 N NA
 5757013 5757014 SPG_1746 SPG_1747     TRUE 0.990 -7.000 0.382 1.000 N NA
 5757014 5757015 SPG_1747 SPG_1748     TRUE 0.917 15.000 0.031 NA   NA
 5757015 5757016 SPG_1748 SPG_1749     TRUE 0.980 4.000 0.222 NA   NA
 5757016 5757017 SPG_1749 SPG_1750     FALSE 0.014 682.000 0.000 NA   NA
 5757017 5757018 SPG_1750 SPG_1751     TRUE 0.934 22.000 0.100 NA   NA
 5757019 5757020 SPG_1752 SPG_1753     FALSE 0.067 159.000 0.000 NA   NA
 5757020 5757021 SPG_1753 SPG_1754     FALSE 0.022 423.000 0.000 1.000 N NA
 5757021 5757022 SPG_1754 SPG_1755     TRUE 0.999 -10.000 0.870 0.038 Y NA
 5757022 5757023 SPG_1755 SPG_1756     TRUE 0.998 -3.000 0.870 1.000 Y NA
 5757023 5757024 SPG_1756 SPG_1757     TRUE 0.627 96.000 0.055 1.000 Y NA
 5757025 5757026 SPG_1758 SPG_1759     TRUE 0.958 0.000 0.014 NA   NA
 5757026 5757027 SPG_1759 SPG_1760   scpB TRUE 0.983 -13.000 0.224 NA N NA
 5757027 5757028 SPG_1760 SPG_1761 scpB   TRUE 0.978 19.000 0.570 NA   NA
 5757028 5757029 SPG_1761 SPG_1762     TRUE 0.959 0.000 0.017 NA   NA
 5757029 5757030 SPG_1762 SPG_1763     TRUE 0.980 -9.000 0.111 1.000   NA
 5757030 5757031 SPG_1763 SPG_1764     TRUE 0.976 -3.000 0.065 NA   NA
 5757031 5757032 SPG_1764 SPG_1765     TRUE 0.967 -24.000 0.085 NA   NA
 5757032 5757033 SPG_1765 SPG_1766   murI TRUE 0.971 -3.000 0.034 1.000 N NA
 5757033 5757034 SPG_1766 SPG_1767 murI   FALSE 0.111 207.000 0.014 NA   NA
 5757034 5757035 SPG_1767 SPG_1768   treC FALSE 0.040 256.000 0.000 NA   NA
 5757035 5757036 SPG_1768 SPG_1769 treC   TRUE 0.712 178.000 0.650 1.000 Y NA
 5757037 5757038 SPG_1770 SPG_1771     FALSE 0.068 155.000 0.000 NA   NA
 5757038 5757039 SPG_1771 SPG_1772     TRUE 0.727 25.000 0.000 NA   NA
 5757039 5757040 SPG_1772 SPG_1773     FALSE 0.034 281.000 0.000 NA   NA
 5757041 5757042 SPG_1774 SPG_1775     TRUE 0.998 11.000 0.333 0.001 Y NA
 5757042 5757043 SPG_1775 SPG_1776     TRUE 0.995 9.000 0.650 1.000 Y NA
 5757043 5757044 SPG_1776 SPG_1777     TRUE 0.999 0.000 0.556 0.038 Y NA
 5757044 5757045 SPG_1777 SPG_1778     TRUE 0.870 67.000 0.000 0.038 Y NA
 5757047 5757048 SPG_1780 SPG_1781     FALSE 0.073 138.000 0.000 NA N NA
 5757048 5757049 SPG_1781 SPG_1782     FALSE 0.207 358.000 0.050 1.000 Y NA
 5757049 5757050 SPG_1782 SPG_1783     TRUE 0.998 14.000 0.925 0.038 Y NA
 5757050 5757051 SPG_1783 SPG_1784     TRUE 0.995 14.000 0.275 0.038 Y NA
 5757051 5757052 SPG_1784 SPG_1785     TRUE 0.808 92.000 0.286 1.000 Y NA
 5757053 5757054 SPG_1786 SPG_1787 msmR birA TRUE 0.922 -3.000 0.000 1.000 N NA
 5757055 5757056 SPG_1788 SPG_1789     TRUE 0.859 7.000 0.000 NA   NA
 5757056 5757057 SPG_1789 SPG_1790     TRUE 0.665 36.000 0.000 NA   NA
 5757057 5757058 SPG_1790 SPG_1791     TRUE 0.768 20.000 0.000 NA   NA
 5757058 5757059 SPG_1791 SPG_1792     TRUE 0.875 4.000 0.000 NA   NA
 5757059 5757060 SPG_1792 SPG_1793     TRUE 0.829 11.000 0.000 NA   NA
 5757060 5757061 SPG_1793 SPG_1794     TRUE 0.829 11.000 0.000 NA   NA
 5757061 5757062 SPG_1794 SPG_1795     TRUE 0.804 14.000 0.000 NA   NA
 5757062 5757063 SPG_1795 SPG_1796     TRUE 0.862 6.000 0.000 NA   NA
 5757063 5757064 SPG_1796 SPG_1797     TRUE 0.792 16.000 0.000 NA   NA
 5757064 5757065 SPG_1797 SPG_1798     TRUE 0.840 10.000 0.000 NA   NA
 5757065 5757066 SPG_1798 SPG_1799     TRUE 0.856 8.000 0.000 NA   NA
 5757066 5757067 SPG_1799 SPG_1800     TRUE 0.741 23.000 0.000 NA   NA
 5757067 5757068 SPG_1800 SPG_1801     TRUE 0.777 19.000 0.000 NA   NA
 5757068 5757069 SPG_1801 SPG_1802     TRUE 0.862 6.000 0.000 NA   NA
 5757069 5757070 SPG_1802 SPG_1803     TRUE 0.727 25.000 0.000 NA   NA
 5757070 5757071 SPG_1803 SPG_1804     TRUE 0.883 3.000 0.000 NA   NA
 5757071 5757072 SPG_1804 SPG_1805   rrfB TRUE 0.868 5.000 0.000 NA   NA
 5757072 5757073 SPG_1805 SPG_1806 rrfB rrlB FALSE 0.257 77.000 0.000 NA   NA
 5757073 5757074 SPG_1806 SPG_1807 rrlB   FALSE 0.085 125.000 0.000 NA   NA
 5757074 5757075 SPG_1807 SPG_1808   rrsB FALSE 0.083 127.000 0.000 NA   NA
 5757075 5757076 SPG_1808 SPG_1809 rrsB   FALSE 0.037 266.000 0.000 NA   NA
 5757076 5757077 SPG_1809 SPG_1810     TRUE 0.437 62.000 0.000 NA   NA
 5757078 5757079 SPG_1811 SPG_1812 recX   TRUE 0.338 89.000 0.025 NA   NA
 5757080 5757081 SPG_1813 SPG_1814     FALSE 0.029 312.000 0.000 NA   NA
 5757081 5757082 SPG_1814 SPG_1815     TRUE 0.834 13.000 0.000 1.000   NA
 5757082 5757083 SPG_1815 SPG_1816     FALSE 0.017 527.000 0.000 NA   NA
 5757083 5757084 SPG_1816 SPG_1817     FALSE 0.237 94.000 0.007 NA   NA
 5757084 5757085 SPG_1817 SPG_1818   groL FALSE 0.077 258.000 0.010 NA   NA
 5757085 5757086 SPG_1818 SPG_1819 groL groS TRUE 0.985 16.000 0.160 1.000 Y NA
 5757086 5757087 SPG_1819 SPG_1820 groS ssb FALSE 0.145 270.000 0.083 1.000 N NA
 5757087 5757088 SPG_1820 SPG_1821 ssb   FALSE 0.267 78.000 0.000 1.000   NA
 5757088 5757089 SPG_1821 SPG_1822     TRUE 0.851 33.000 0.020 1.000   NA
 5757089 5757090 SPG_1822 SPG_1823     TRUE 0.969 16.000 0.239 1.000   NA
 5757090 5757091 SPG_1823 SPG_1824     TRUE 0.983 -3.000 0.140 NA   NA
 5757091 5757092 SPG_1824 SPG_1825     FALSE 0.032 294.000 0.000 NA   NA
 5757092 5757093 SPG_1825 SPG_1826     FALSE 0.052 209.000 0.000 NA   NA
 5757093 5757094 SPG_1826 SPG_1827     TRUE 0.989 6.000 0.714 NA   NA
 5757094 5757095 SPG_1827 SPG_1828     FALSE 0.263 114.000 0.053 NA   NA
 5757095 5757096 SPG_1828 SPG_1829     TRUE 0.914 -3.000 0.000 NA   NA
 5757096 5757097 SPG_1829 SPG_1830     TRUE 0.391 66.000 0.000 NA   NA
 5757097 5757098 SPG_1830 SPG_1831     TRUE 0.992 7.000 1.000 1.000   NA
 5757098 5757099 SPG_1831 SPG_1832     TRUE 0.954 16.000 0.000 0.008   NA
 5757099 5757100 SPG_1832 SPG_1833     TRUE 0.942 39.000 0.296 1.000   NA
 5757100 5757101 SPG_1833 SPG_1834     TRUE 0.813 13.000 0.000 NA   NA
 5757101 5757102 SPG_1834 SPG_1835     FALSE 0.085 124.000 0.000 NA   NA
 5757102 5757103 SPG_1835 SPG_1836   ply FALSE 0.013 881.000 0.000 NA   NA
 5757103 5757104 SPG_1836 SPG_1837 ply   TRUE 0.829 11.000 0.000 NA   NA
 5757104 5757105 SPG_1837 SPG_1838     TRUE 0.320 71.000 0.000 NA   NA
 5757105 5757106 SPG_1838 SPG_1839     TRUE 0.813 13.000 0.000 NA   NA
 5757108 5757109 SPG_1841 SPG_1842     TRUE 0.463 59.000 0.000 NA   NA
 5757109 5757110 SPG_1842 SPG_1843     TRUE 0.900 -10.000 0.000 NA   NA
 5757110 5757111 SPG_1843 SPG_1844     FALSE 0.020 408.000 0.000 NA   NA
 5757111 5757112 SPG_1844 SPG_1845     FALSE 0.081 129.000 0.000 NA   NA
 5757112 5757113 SPG_1845 SPG_1846     FALSE 0.044 239.000 0.000 NA   NA
 5757113 5757114 SPG_1846 SPG_1847   lytA FALSE 0.029 346.000 0.000 1.000   NA
 5757114 5757115 SPG_1847 SPG_1848 lytA   FALSE 0.026 376.000 0.000 1.000   NA
 5757115 5757116 SPG_1848 SPG_1849   recA FALSE 0.033 307.000 0.000 1.000 N NA
 5757116 5757117 SPG_1849 SPG_1850 recA   TRUE 0.830 55.000 0.083 1.000   NA
 5757117 5757118 SPG_1850 SPG_1851     FALSE 0.273 85.000 0.004 NA   NA
 5757118 5757119 SPG_1851 SPG_1852     TRUE 0.980 8.000 0.283 NA N NA
 5757119 5757120 SPG_1852 SPG_1853     TRUE 0.963 -10.000 0.033 NA   NA
 5757120 5757121 SPG_1853 SPG_1854     FALSE 0.257 86.000 0.003 NA   NA
 5757121 5757122 SPG_1854 SPG_1855     FALSE 0.022 383.000 0.000 NA   NA
 5757123 5757124 SPG_1856 SPG_1857     FALSE 0.108 103.000 0.000 NA   NA
 5757124 5757125 SPG_1857 SPG_1858     TRUE 0.994 2.000 1.000 NA   NA
 5757125 5757126 SPG_1858 SPG_1859     FALSE 0.073 141.000 0.000 NA   NA
 5757127 5757128 SPG_1860 SPG_1861 ndk rpoC FALSE 0.148 111.000 0.002 1.000 N NA
 5757128 5757129 SPG_1861 SPG_1862 rpoC rpoB TRUE 0.997 33.000 0.851 0.001 Y NA
 5757131 5757132 SPG_1864 SPG_1865     FALSE 0.032 291.000 0.000 NA   NA
 5757132 5757133 SPG_1865 SPG_1866     TRUE 0.930 39.000 0.237 NA   NA
 5757133 5757134 SPG_1866 SPG_1867   murA2 TRUE 0.980 -7.000 0.110 NA   NA
 5757134 5757135 SPG_1867 SPG_1868 murA2   TRUE 0.958 24.000 0.279 NA   NA
 5757135 5757136 SPG_1868 SPG_1869     TRUE 0.480 58.000 0.000 NA   NA
 5757136 5757137 SPG_1869 SPG_1870   coaD TRUE 0.932 -16.000 0.003 1.000 N NA
 5757137 5757138 SPG_1870 SPG_1871 coaD   TRUE 0.949 -10.000 0.008 1.000 N NA
 5757138 5757139 SPG_1871 SPG_1872   asnA TRUE 0.578 65.000 0.006 1.000 N NA
 5757139 5757140 SPG_1872 SPG_1873 asnA   FALSE 0.176 113.000 0.011 NA   NA
 5757140 5757141 SPG_1873 SPG_1874     TRUE 0.639 56.000 0.005 NA   NA
 5757141 5757142 SPG_1874 SPG_1875     FALSE 0.172 87.000 0.000 NA   NA
 5757143 5757144 SPG_1876 SPG_1877     TRUE 0.662 78.000 0.154 1.000 N NA
 5757145 5757146 SPG_1878 SPG_1879 pflA lysA FALSE 0.158 126.000 0.007 1.000 N NA
 5757146 5757147 SPG_1879 SPG_1880 lysA purR TRUE 0.576 67.000 0.012 1.000 N NA
 5757147 5757148 SPG_1880 SPG_1881 purR   FALSE 0.126 267.000 0.052 1.000   NA
 5757148 5757149 SPG_1881 SPG_1882     TRUE 0.962 -10.000 0.030 NA   NA
 5757149 5757150 SPG_1882 SPG_1883     TRUE 0.961 2.000 0.030 NA   NA
 5757150 5757151 SPG_1883 SPG_1884   rpe TRUE 0.976 -37.000 0.166 1.000 N NA
 5757151 5757152 SPG_1884 SPG_1885 rpe   TRUE 0.973 11.000 0.213 1.000   NA
 5757152 5757153 SPG_1885 SPG_1886     TRUE 0.939 2.000 0.003 1.000   NA
 5757153 5757154 SPG_1886 SPG_1887     FALSE 0.080 131.000 0.000 NA   NA
 5757154 5757155 SPG_1887 SPG_1888     TRUE 0.908 -7.000 0.000 NA   NA
 5757155 5757156 SPG_1888 SPG_1889     TRUE 0.898 2.000 0.000 NA   NA
 5757156 5757157 SPG_1889 SPG_1890     FALSE 0.257 77.000 0.000 NA   NA
 5757157 5757158 SPG_1890 SPG_1891     FALSE 0.027 320.000 0.000 NA   NA
 5757158 5757159 SPG_1891 SPG_1892     TRUE 0.340 72.000 0.000 1.000   NA
 5757159 5757160 SPG_1892 SPG_1893     TRUE 0.991 0.000 0.058 NA Y NA
 5757160 5757161 SPG_1893 SPG_1894     FALSE 0.031 296.000 0.000 NA   NA
 5757161 5757162 SPG_1894 SPG_1895   rpmH FALSE 0.044 263.000 0.000 1.000   NA
 5757162 5757163 SPG_1895 SPG_1896 rpmH   FALSE 0.116 145.000 0.002 1.000   NA
 5757163 5757164 SPG_1896 SPG_1897     FALSE 0.113 156.000 0.005 NA   NA
 5757168 5757169 SPG_1901 SPG_1902     FALSE 0.193 425.000 0.000 0.028 Y NA
 5757169 5757170 SPG_1902 SPG_1903     TRUE 0.999 2.000 0.857 0.010 Y NA
 5757170 5757171 SPG_1903 SPG_1904     TRUE 0.980 0.000 0.107 NA N NA
 5757171 5757172 SPG_1904 SPG_1905     TRUE 0.993 2.000 0.193 NA Y NA
 5757172 5757173 SPG_1905 SPG_1906     TRUE 0.955 -13.000 0.023 NA   NA
 5757173 5757174 SPG_1906 SPG_1907     TRUE 0.995 -3.000 1.000 NA   NA
 5757174 5757175 SPG_1907 SPG_1908     FALSE 0.015 589.000 0.000 NA   NA
 5757175 5757176 SPG_1908 SPG_1909     TRUE 0.792 16.000 0.000 NA   NA
 5757176 5757177 SPG_1909 SPG_1910     TRUE 0.840 10.000 0.000 NA   NA
 5757177 5757178 SPG_1910 SPG_1911     TRUE 0.856 8.000 0.000 NA   NA
 5757178 5757179 SPG_1911 SPG_1912     TRUE 0.741 23.000 0.000 NA   NA
 5757179 5757180 SPG_1912 SPG_1913     TRUE 0.777 19.000 0.000 NA   NA
 5757180 5757181 SPG_1913 SPG_1914     TRUE 0.862 6.000 0.000 NA   NA
 5757181 5757182 SPG_1914 SPG_1915     TRUE 0.727 25.000 0.000 NA   NA
 5757182 5757183 SPG_1915 SPG_1916     TRUE 0.883 3.000 0.000 NA   NA
 5757183 5757184 SPG_1916 SPG_1917   rrfC TRUE 0.868 5.000 0.000 NA   NA
 5757184 5757185 SPG_1917 SPG_1918 rrfC rrlC FALSE 0.257 77.000 0.000 NA   NA
 5757185 5757186 SPG_1918 SPG_1919 rrlC   FALSE 0.085 125.000 0.000 NA   NA
 5757186 5757187 SPG_1919 SPG_1920   rrsC FALSE 0.083 127.000 0.000 NA   NA
 5757187 5757188 SPG_1920 SPG_1921 rrsC   FALSE 0.037 267.000 0.000 NA   NA
 5757188 5757189 SPG_1921 SPG_1922     FALSE 0.143 94.000 0.000 NA   NA
 5757189 5757190 SPG_1922 SPG_1923   nusG TRUE 0.324 122.000 0.002 0.037   NA
 5757190 5757191 SPG_1923 SPG_1924 nusG secE TRUE 0.951 55.000 0.843 1.000 N NA
 5757191 5757192 SPG_1924 SPG_1925 secE   FALSE 0.055 215.000 0.000 1.000 N NA
 5757194 5757195 SPG_1927 SPG_1928 gap   FALSE 0.070 177.000 0.000 1.000   NA
 5757195 5757196 SPG_1928 SPG_1929     FALSE 0.014 672.000 0.000 NA   NA
 5757196 5757197 SPG_1929 SPG_1930   nadC FALSE 0.077 131.000 0.000 NA N NA
 5757199 5757200 SPG_1932 SPG_1933     FALSE 0.020 522.000 0.000 1.000   NA
 5757201 5757202 SPG_1934 SPG_1935     TRUE 0.943 18.000 0.000 1.000 Y NA
 5757202 5757203 SPG_1935 SPG_1936     TRUE 0.989 5.000 0.000 0.017 Y NA
 5757203 5757204 SPG_1936 SPG_1937     TRUE 0.993 -3.000 0.000 0.017 Y NA
 5757205 5757206 SPG_1938 SPG_1939     FALSE 0.054 203.000 0.000 NA   NA
 5757206 5757207 SPG_1939 SPG_1940     TRUE 0.862 -40.000 0.000 NA   NA
 5757207 5757208 SPG_1940 SPG_1941     TRUE 0.955 2.000 0.019 NA   NA
 5757208 5757209 SPG_1941 SPG_1942   yajC TRUE 0.684 46.000 0.002 NA N NA
 5757209 5757210 SPG_1942 SPG_1943 yajC tktA FALSE 0.128 117.000 0.002 NA N NA
 5757210 5757211 SPG_1943 SPG_1944 tktA   TRUE 0.298 113.000 0.077 NA   NA
 5757211 5757212 SPG_1944 SPG_1945     TRUE 0.434 112.000 0.231 NA   NA
 5757212 5757213 SPG_1945 SPG_1946     TRUE 0.313 177.000 0.200 1.000 N NA
 5757213 5757214 SPG_1946 SPG_1947     TRUE 0.983 -13.000 0.000 0.001   NA
 5757214 5757215 SPG_1947 SPG_1948     TRUE 0.993 2.000 0.700 1.000   NA
 5757215 5757216 SPG_1948 SPG_1949     TRUE 0.996 4.000 0.536 1.000 Y NA
 5757216 5757217 SPG_1949 SPG_1950     TRUE 0.989 17.000 0.328 1.000 Y NA
 5757217 5757218 SPG_1950 SPG_1951     TRUE 0.955 77.000 0.279 0.017 Y NA
 5757218 5757219 SPG_1951 SPG_1952     TRUE 0.988 23.000 0.431 0.024   NA
 5757219 5757220 SPG_1952 SPG_1953     FALSE 0.211 129.000 0.039 NA   NA
 5757220 5757221 SPG_1953 SPG_1954     TRUE 0.710 51.000 0.008 NA   NA
 5757221 5757222 SPG_1954 SPG_1955     TRUE 0.948 19.000 0.106 1.000   NA
 5757222 5757223 SPG_1955 SPG_1956   rnpA TRUE 0.962 -25.000 0.052 1.000 N NA
 5757223 5757224 SPG_1956 SPG_1957 rnpA   TRUE 0.788 17.000 0.000 NA   NA
 5757224 5757225 SPG_1957 SPG_1958   ackA TRUE 0.906 1.000 0.000 NA   NA
 5757225 5757226 SPG_1958 SPG_1959 ackA   TRUE 0.877 51.000 0.130 1.000 N NA
 5757226 5757227 SPG_1959 SPG_1960     TRUE 0.480 61.000 0.000 1.000   NA
 5757227 5757228 SPG_1960 SPG_1961     TRUE 0.686 32.000 0.000 NA   NA
 5757228 5757229 SPG_1961 SPG_1962     FALSE 0.077 137.000 0.000 NA   NA
 5757229 5757230 SPG_1962 SPG_1963     TRUE 0.981 -22.000 0.232 NA   NA
 5757230 5757231 SPG_1963 SPG_1964     TRUE 0.980 -37.000 0.250 NA   NA
 5757231 5757232 SPG_1964 SPG_1965     TRUE 0.990 -37.000 0.786 NA   NA
 5757232 5757233 SPG_1965 SPG_1966     TRUE 0.993 -7.000 0.110 NA Y NA
 5757233 5757234 SPG_1966 SPG_1967     TRUE 0.999 2.000 0.861 0.001 Y NA
 5757234 5757235 SPG_1967 SPG_1968     TRUE 0.996 -52.000 0.639 1.000 Y NA
 5757235 5757236 SPG_1968 SPG_1969     TRUE 0.612 76.000 0.083 NA   NA
 5757236 5757237 SPG_1969 SPG_1970     FALSE 0.206 151.000 0.053 NA   NA
 5757237 5757238 SPG_1970 SPG_1971   nagA FALSE 0.172 163.000 0.030 1.000 N NA
 5757238 5757239 SPG_1971 SPG_1972 nagA   FALSE 0.076 153.000 0.000 1.000 N NA
 5757239 5757240 SPG_1972 SPG_1973   tgt FALSE 0.178 101.000 0.003 1.000 N NA
 5757242 5757243 SPG_1975 SPG_1976     FALSE 0.101 107.000 0.000 NA   NA
 5757243 5757244 SPG_1976 SPG_1977     TRUE 0.909 11.000 0.012 NA   NA
 5757244 5757245 SPG_1977 SPG_1978     FALSE 0.019 568.000 0.000 1.000   NA
 5757245 5757246 SPG_1978 SPG_1979     TRUE 0.285 166.000 0.133 1.000   NA
 5757246 5757247 SPG_1979 SPG_1980     TRUE 0.986 4.000 0.364 1.000   NA
 5757247 5757248 SPG_1980 SPG_1981   thrC TRUE 0.613 61.000 0.006 1.000 N NA
 5757248 5757249 SPG_1981 SPG_1982 thrC   TRUE 0.370 76.000 0.003 NA N NA
 5757249 5757250 SPG_1982 SPG_1983     FALSE 0.039 263.000 0.000 NA   NA
 5757251 5757252 SPG_1984 SPG_1985     FALSE 0.063 171.000 0.000 NA   NA
 5757252 5757253 SPG_1985 SPG_1986     FALSE 0.022 384.000 0.000 NA   NA
 5757253 5757254 SPG_1986 SPG_1987     FALSE 0.093 114.000 0.000 NA   NA
 5757254 5757255 SPG_1987 SPG_1988     TRUE 0.821 41.000 0.027 NA   NA
 5757255 5757256 SPG_1988 SPG_1989     FALSE 0.049 216.000 0.000 NA   NA
 5757256 5757257 SPG_1989 SPG_1990     TRUE 0.919 -7.000 0.000 1.000   NA
 5757258 5757259 SPG_1991 SPG_1992     TRUE 0.840 10.000 0.000 NA   NA
 5757259 5757260 SPG_1992 SPG_1993     TRUE 0.829 11.000 0.000 NA   NA
 5757260 5757261 SPG_1993 SPG_1994     TRUE 0.798 15.000 0.000 NA   NA
 5757261 5757262 SPG_1994 SPG_1995     TRUE 0.868 5.000 0.000 NA   NA
 5757262 5757263 SPG_1995 SPG_1996     TRUE 0.813 13.000 0.000 NA   NA
 5757263 5757264 SPG_1996 SPG_1997     TRUE 0.875 4.000 0.000 NA   NA
 5757264 5757265 SPG_1997 SPG_1998     TRUE 0.829 11.000 0.000 NA   NA
 5757265 5757266 SPG_1998 SPG_1999     FALSE 0.206 83.000 0.000 NA   NA
 5757266 5757267 SPG_1999 SPG_2000     TRUE 0.649 38.000 0.000 NA   NA
 5757267 5757268 SPG_2000 SPG_2001     TRUE 0.883 3.000 0.000 NA   NA
 5757268 5757269 SPG_2001 SPG_2002   rrfD TRUE 0.868 5.000 0.000 NA   NA
 5757269 5757270 SPG_2002 SPG_2003 rrfD rrlD FALSE 0.257 77.000 0.000 NA   NA
 5757270 5757271 SPG_2003 SPG_2004 rrlD   FALSE 0.085 125.000 0.000 NA   NA
 5757271 5757272 SPG_2004 SPG_2005   rrsD FALSE 0.083 127.000 0.000 NA   NA
 5757272 5757273 SPG_2005 SPG_2006 rrsD   FALSE 0.037 266.000 0.000 NA   NA
 5757273 5757274 SPG_2006 SPG_2007     FALSE 0.087 122.000 0.000 NA   NA
 5757274 5757275 SPG_2007 SPG_2008   glnS TRUE 0.896 14.000 0.008 1.000 N NA
 5757275 5757276 SPG_2008 SPG_2009 glnS pgi FALSE 0.147 124.000 0.005 1.000 N NA
 5757276 5757277 SPG_2009 SPG_2010 pgi   TRUE 0.893 -13.000 0.000 NA   NA
 5757277 5757278 SPG_2010 SPG_2011     TRUE 0.875 4.000 0.000 NA   NA
 5757278 5757279 SPG_2011 SPG_2012     FALSE 0.235 139.000 0.053 1.000   NA
 5757281 5757282 SPG_2014 SPG_2015     FALSE 0.115 147.000 0.003 1.000 N NA
 5757282 5757283 SPG_2015 SPG_2016   argR2 TRUE 0.726 51.000 0.008 1.000 N NA
 5757286 5757287 SPG_2019 SPG_2020   pnpR TRUE 0.397 84.000 0.027 NA   NA
 5757287 5757288 SPG_2020 SPG_2021 pnpR pnpS TRUE 0.994 1.000 0.164 1.000 Y NA
 5757288 5757289 SPG_2021 SPG_2022 pnpS   TRUE 0.295 167.000 0.176 NA   NA
 5757289 5757290 SPG_2022 SPG_2023     FALSE 0.156 118.000 0.007 NA   NA
 5757290 5757291 SPG_2023 SPG_2024     TRUE 0.998 -7.000 0.219 0.003 Y NA
 5757291 5757292 SPG_2024 SPG_2025     TRUE 0.999 2.000 0.428 0.003 Y NA
 5757292 5757293 SPG_2025 SPG_2026     TRUE 0.985 15.000 0.182 NA Y NA
 5757293 5757294 SPG_2026 SPG_2027     TRUE 0.359 68.000 0.000 NA   NA
 5757296 5757297 SPG_2029 SPG_2030 gpsA galU TRUE 0.901 22.000 0.032 1.000 N NA
 5757298 5757299 SPG_2031 SPG_2032     TRUE 0.961 -16.000 0.037 1.000   NA
 5757299 5757300 SPG_2032 SPG_2033     TRUE 0.903 12.000 0.006 1.000   NA
 5757300 5757301 SPG_2033 SPG_2034   dapD TRUE 0.855 68.000 0.372 1.000   NA
 5757301 5757302 SPG_2034 SPG_2035 dapD   FALSE 0.052 231.000 0.000 1.000   NA
 5757302 5757303 SPG_2035 SPG_2036     TRUE 0.441 65.000 0.000 1.000   NA
 5757305 5757306 SPG_2038 SPG_2039     TRUE 0.988 2.000 0.363 NA   NA
 5757310 5757311 SPG_2043 SPG_2044 glgP malQ TRUE 0.990 26.000 0.105 0.021 Y NA
 5757312 5757313 SPG_2045 SPG_2046 malX malC TRUE 0.801 111.000 0.621 1.000 Y NA
 5757313 5757314 SPG_2046 SPG_2047 malC malD TRUE 0.999 2.000 0.714 0.036 Y NA
 5757314 5757315 SPG_2047 SPG_2048 malD malA FALSE 0.219 253.000 0.200 NA   NA
 5757315 5757316 SPG_2048 SPG_2049 malA malR TRUE 0.980 10.000 0.364 NA   NA
 5757317 5757318 SPG_2050 SPG_2051   aspS TRUE 0.941 -22.000 0.016 NA   NA
 5757318 5757319 SPG_2051 SPG_2052 aspS   FALSE 0.039 352.000 0.003 NA   NA
 5757319 5757320 SPG_2052 SPG_2053     TRUE 0.974 18.000 0.400 NA   NA
 5757320 5757321 SPG_2053 SPG_2054     TRUE 0.821 12.000 0.000 NA   NA
 5757321 5757322 SPG_2054 SPG_2055     TRUE 0.969 3.000 0.077 NA   NA
 5757322 5757323 SPG_2055 SPG_2056     TRUE 0.911 0.000 0.000 NA   NA
 5757323 5757324 SPG_2056 SPG_2057     TRUE 0.840 10.000 0.000 NA   NA
 5757324 5757325 SPG_2057 SPG_2058   hisS FALSE 0.041 342.000 0.003 NA   NA
 5757325 5757326 SPG_2058 SPG_2059 hisS   TRUE 0.334 78.000 0.003 NA   NA
 5757326 5757327 SPG_2059 SPG_2060     FALSE 0.058 191.000 0.000 NA   NA
 5757327 5757328 SPG_2060 SPG_2061     TRUE 0.871 -25.000 0.000 NA   NA
 5757330 5757331 SPG_2063 SPG_2064     FALSE 0.175 233.000 0.000 1.000 Y NA
 5757331 5757332 SPG_2064 SPG_2065     TRUE 0.999 -3.000 0.742 0.001 Y NA
 5757332 5757333 SPG_2065 SPG_2066     TRUE 0.986 4.000 0.333 1.000   NA
 5757333 5757334 SPG_2066 SPG_2067     TRUE 0.987 13.000 0.182 0.024   NA
 5757334 5757335 SPG_2067 SPG_2068     TRUE 0.995 4.000 0.052 0.017 Y NA
 5757335 5757336 SPG_2068 SPG_2069     TRUE 0.844 53.000 0.000 0.017 N NA
 5757337 5757338 SPG_2070 SPG_2071     TRUE 0.956 -34.000 0.000 0.063   NA
 5757338 5757339 SPG_2071 SPG_2072   rpmF FALSE 0.028 356.000 0.000 1.000   NA
 5757339 5757340 SPG_2072 SPG_2073 rpmF rpmG TRUE 0.987 16.000 0.012 0.024 Y NA
 5757342 5757343 SPG_2076 SPG_2077     FALSE 0.072 145.000 0.000 NA   NA
 5757343 5757344 SPG_2077 SPG_2078     TRUE 0.701 30.000 0.000 NA   NA
 5757345 5757346 SPG_2079 SPG_2080     TRUE 0.391 66.000 0.000 NA   NA
 5757346 5757347 SPG_2080 SPG_2081     FALSE 0.037 267.000 0.000 NA   NA
 5757347 5757348 SPG_2081 SPG_2082     TRUE 0.992 -6.000 0.500 NA   NA
 5757348 5757349 SPG_2082 SPG_2083     TRUE 0.528 82.000 0.000 NA Y NA
 5757349 5757350 SPG_2083 SPG_2084     FALSE 0.177 91.000 0.000 1.000   NA
 5757352 5757353 SPG_2086 SPG_2087     TRUE 0.606 44.000 0.000 NA   NA
 5757354 5757355 SPG_2088 SPG_2089 arcA argF TRUE 0.938 58.000 0.146 1.000 Y NA
 5757355 5757356 SPG_2089 SPG_2090 argF   TRUE 0.533 165.000 0.146 1.000 Y NA
 5757356 5757357 SPG_2090 SPG_2091     FALSE 0.051 211.000 0.000 NA   NA
 5757357 5757358 SPG_2091 SPG_2092     TRUE 0.943 22.000 0.140 NA   NA
 5757359 5757360 SPG_2093 SPG_2094     TRUE 0.909 -12.000 0.000 1.000   NA
 5757360 5757361 SPG_2094 SPG_2095     FALSE 0.078 354.000 0.000 0.063   NA
 5757361 5757362 SPG_2095 SPG_2096     FALSE 0.089 130.000 0.000 1.000 N NA
 5757362 5757363 SPG_2096 SPG_2097     FALSE 0.081 146.000 0.000 1.000   NA
 5757363 5757364 SPG_2097 SPG_2098     TRUE 0.992 -30.000 0.075 0.001   NA
 5757364 5757365 SPG_2098 SPG_2099     TRUE 0.952 13.000 0.000 1.000 Y NA
 5757365 5757366 SPG_2099 SPG_2100     TRUE 0.798 15.000 0.000 NA   NA
 5757366 5757367 SPG_2100 SPG_2101     FALSE 0.075 138.000 0.000 NA   NA
 5757367 5757368 SPG_2101 SPG_2102     TRUE 0.829 11.000 0.000 NA   NA
 5757368 5757369 SPG_2102 SPG_2103     TRUE 0.777 22.000 0.000 1.000   NA
 5757369 5757370 SPG_2103 SPG_2104     TRUE 0.879 6.000 0.000 1.000   NA
 5757370 5757371 SPG_2104 SPG_2105     TRUE 0.995 -3.000 0.182 1.000 Y NA
 5757371 5757372 SPG_2105 SPG_2106     TRUE 0.998 3.000 0.333 0.036 Y NA
 5757372 5757373 SPG_2106 SPG_2107     TRUE 0.961 87.000 1.000 0.036 Y NA
 5757373 5757374 SPG_2107 SPG_2108     TRUE 0.915 29.000 0.000 1.000 Y NA
 5757376 5757377 SPG_2110 SPG_2111     TRUE 0.987 10.000 0.111 1.000 Y NA
 5757377 5757378 SPG_2111 SPG_2112     TRUE 0.997 -7.000 0.673 1.000 Y NA
 5757378 5757379 SPG_2112 SPG_2113     TRUE 0.986 0.000 0.192 1.000 N NA
 5757381 5757382 SPG_2115 SPG_2116 dltD dltC TRUE 0.990 -7.000 0.409 NA   NA
 5757382 5757383 SPG_2116 SPG_2117 dltC dltB TRUE 0.976 14.000 0.387 NA   NA
 5757383 5757384 SPG_2117 SPG_2118 dltB dltA TRUE 0.991 -3.000 0.435 NA N NA
 5757384 5757385 SPG_2118 SPG_2119 dltA   TRUE 0.976 21.000 0.549 NA   NA
 5757385 5757386 SPG_2119 SPG_2120     FALSE 0.028 314.000 0.000 NA   NA
 5757386 5757387 SPG_2120 SPG_2121     FALSE 0.018 457.000 0.000 NA   NA
 5757391 5757392 SPG_2125 SPG_2126     TRUE 0.875 68.000 0.500 1.000 N NA
 5757392 5757393 SPG_2126 SPG_2127   glpK TRUE 0.995 42.000 0.500 0.001 Y NA
 5757393 5757394 SPG_2127 SPG_2128 glpK   TRUE 0.441 159.000 0.462 NA   NA
 5757395 5757396 SPG_2129 SPG_2130     TRUE 0.962 -13.000 0.034 1.000 N NA
 5757396 5757397 SPG_2130 SPG_2131     FALSE 0.144 96.000 0.000 1.000 N NA
 5757397 5757398 SPG_2131 SPG_2132     TRUE 0.990 0.000 0.000 0.056 Y NA
 5757398 5757399 SPG_2132 SPG_2133     FALSE 0.228 134.000 0.000 0.056   NA
 5757399 5757400 SPG_2133 SPG_2134     TRUE 0.973 -3.000 0.000 0.056   NA
 5757401 5757402 SPG_2135 SPG_2136 pspC   FALSE 0.267 78.000 0.000 1.000   NA
 5757402 5757403 SPG_2136 SPG_2137     TRUE 0.711 95.000 0.667 1.000   NA
 5757403 5757404 SPG_2137 SPG_2138     TRUE 0.998 -3.000 1.000 1.000 Y NA
 5757404 5757405 SPG_2138 SPG_2139     FALSE 0.032 289.000 0.000 NA   NA
 5757407 5757408 SPG_2141 SPG_2142   ctsR TRUE 0.982 2.000 0.188 NA N NA
 5757408 5757409 SPG_2142 SPG_2143 ctsR   FALSE 0.170 119.000 0.013 NA N NA
 5757409 5757410 SPG_2143 SPG_2144     TRUE 0.997 0.000 0.554 NA Y NA
 5757410 5757411 SPG_2144 SPG_2145     TRUE 0.984 38.000 0.584 NA Y NA
 5757411 5757412 SPG_2145 SPG_2146     TRUE 0.985 -28.000 0.364 NA   NA
 5757412 5757413 SPG_2146 SPG_2147   cbpD FALSE 0.040 255.000 0.000 NA   NA
 5757413 5757414 SPG_2147 SPG_2148 cbpD   FALSE 0.152 138.000 0.014 NA   NA
 5757414 5757415 SPG_2148 SPG_2149   dnaB TRUE 0.969 2.000 0.053 NA   NA
 5757415 5757416 SPG_2149 SPG_2150 dnaB rplI TRUE 0.889 43.000 0.100 1.000 N NA
 5757416 5757417 SPG_2150 SPG_2151 rplI   TRUE 0.983 -3.000 0.119 1.000 N NA
 5757417 5757418 SPG_2151 SPG_2152   yfiA FALSE 0.127 136.000 0.006 NA N NA
 5757418 5757419 SPG_2152 SPG_2153 yfiA   TRUE 0.542 80.000 0.080 NA   NA
 5757419 5757420 SPG_2153 SPG_2154     TRUE 0.984 -3.000 0.130 1.000   NA
 5757421 5757422 SPG_2155 SPG_2156     FALSE 0.098 285.000 0.033 1.000   NA
 5757425 5757426 SPG_2159 SPG_2160     FALSE 0.043 246.000 0.000 NA   NA
 5757426 5757427 SPG_2160 SPG_2161   rpsB TRUE 0.925 79.000 0.748 1.000 Y NA
 5757427 5757428 SPG_2161 SPG_2162 rpsB   FALSE 0.046 224.000 0.000 NA   NA
 5757428 5757429 SPG_2162 SPG_2163     TRUE 0.293 94.000 0.021 NA   NA
 5757429 5757430 SPG_2163 SPG_2164     TRUE 0.999 0.000 0.550 0.003 Y NA
 5757430 5757431 SPG_2164 SPG_2165     TRUE 0.595 59.000 0.003 1.000 N NA
 5757431 5757432 SPG_2165 SPG_2166     TRUE 0.994 -7.000 0.136 1.000 Y NA
 5757432 5757433 SPG_2166 SPG_2167     TRUE 0.999 -15.000 0.713 0.026 Y NA
 5757433 5757434 SPG_2167 SPG_2168   pgsA TRUE 0.963 -3.000 0.015 1.000 N NA
 5757434 5757435 SPG_2168 SPG_2169 pgsA   TRUE 0.956 11.000 0.077 1.000   NA
 5757435 5757436 SPG_2169 SPG_2170     TRUE 0.915 42.000 0.156 1.000   NA
 5757436 5757437 SPG_2170 SPG_2171     TRUE 0.998 -3.000 0.872 0.006   NA
 5757438 5757439 SPG_2172 SPG_2173   recF TRUE 0.982 3.000 0.209 1.000   NA
 5757440 5757441 SPG_2174 SPG_2175   trpS FALSE 0.174 152.000 0.026 1.000 N NA
 5757442 5757443 SPG_2176 SPG_2177     TRUE 0.703 62.000 0.040 NA   NA
 5757444 5757445 SPG_2178 SPG_2179     FALSE 0.185 85.000 0.000 NA   NA
 5757447 5757448 SPG_2181 SPG_2182     TRUE 0.862 6.000 0.000 NA   NA
 5757448 5757449 SPG_2182 SPG_2183   comE TRUE 0.547 52.000 0.000 NA   NA
 5757449 5757450 SPG_2183 SPG_2184 comE comD TRUE 0.998 -3.000 1.000 NA Y NA
 5757450 5757451 SPG_2184 SPG_2185 comD comC TRUE 0.980 21.000 0.750 NA   NA
 5757451 5757452 SPG_2185 SPG_2186 comC   FALSE 0.065 165.000 0.000 NA   NA
 5757452 5757453 SPG_2186 SPG_2187     TRUE 0.606 44.000 0.000 NA   NA
 5757454 5757455 SPG_2188 SPG_2189     TRUE 0.690 58.000 0.015 1.000 N NA