MicrobesOnline Operon Predictions for Ureaplasma parvum serovar 3 str. ATCC 27815

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 5730620 5730621 UPA3_0001 UPA3_0002 dnaA rpmE FALSE 0.398 141.000 0.002 1.000 N NA
 5730621 5730622 UPA3_0002 UPA3_0003 rpmE prfA TRUE 0.745 133.000 0.110 1.000 Y NA
 5730622 5730623 UPA3_0003 UPA3_0004 prfA   TRUE 0.960 0.000 0.081 1.000 Y NA
 5730623 5730624 UPA3_0004 UPA3_0005     TRUE 0.845 -13.000 0.005 NA Y NA
 5730624 5730625 UPA3_0005 UPA3_0006     TRUE 0.945 4.000 0.012 NA N NA
 5730625 5730626 UPA3_0006 UPA3_0007     TRUE 0.480 96.000 0.031 NA   NA
 5730626 5730627 UPA3_0007 UPA3_0008     TRUE 0.954 3.000 0.667 NA   NA
 5730627 5730628 UPA3_0008 UPA3_0009   mgtE TRUE 0.597 145.000 0.667 NA   NA
 5730628 5730629 UPA3_0009 UPA3_0010 mgtE   FALSE 0.371 157.000 0.002 1.000 N NA
 5730629 5730630 UPA3_0010 UPA3_0011   rplL TRUE 0.992 25.000 0.884 0.093 Y NA
 5730631 5730632 UPA3_0012 UPA3_0013     FALSE 0.149 386.000 0.000 1.000   NA
 5730632 5730633 UPA3_0013 UPA3_0014     TRUE 0.622 0.000 0.000 0.046   NA
 5730633 5730634 UPA3_0014 UPA3_0015     TRUE 0.656 3.000 0.000 1.000   NA
 5730634 5730635 UPA3_0015 UPA3_0016     TRUE 0.790 56.000 0.012 1.000   NA
 5730635 5730636 UPA3_0016 UPA3_0017     TRUE 0.658 171.000 1.000 NA   NA
 5730636 5730637 UPA3_0017 UPA3_0018   trmE TRUE 0.757 2.000 0.003 NA   NA
 5730637 5730638 UPA3_0018 UPA3_0019 trmE   TRUE 0.900 3.000 0.008 1.000   NA
 5730638 5730639 UPA3_0019 UPA3_0020   tmk TRUE 0.942 1.000 0.254 1.000   NA
 5730639 5730640 UPA3_0020 UPA3_0021 tmk   FALSE 0.421 -19.000 0.000 1.000   NA
 5730640 5730641 UPA3_0021 UPA3_0022     FALSE 0.137 106.000 0.000 1.000   NA
 5730641 5730642 UPA3_0022 UPA3_0023     TRUE 0.986 1.000 1.000 0.046 Y NA
 5730642 5730643 UPA3_0023 UPA3_0024     TRUE 0.968 29.000 1.000 NA   NA
 5730643 5730644 UPA3_0024 UPA3_0025     TRUE 0.863 36.000 0.012 NA   NA
 5730644 5730645 UPA3_0025 UPA3_0026     FALSE 0.343 167.000 0.002 1.000 N NA
 5730645 5730646 UPA3_0026 UPA3_0027     FALSE 0.167 100.000 0.002 NA   NA
 5730646 5730647 UPA3_0027 UPA3_0028     TRUE 0.984 15.000 1.000 NA   NA
 5730647 5730648 UPA3_0028 UPA3_0029     TRUE 0.921 6.000 0.009 NA   NA
 5730649 5730650 UPA3_0030 UPA3_0031     FALSE 0.080 395.000 0.000 NA   NA
 5730651 5730652 UPA3_0032 UPA3_0033     TRUE 0.981 8.000 1.000 NA   NA
 5730652 5730653 UPA3_0033 UPA3_0034     FALSE 0.285 50.000 0.000 NA   NA
 5730653 5730654 UPA3_0034 UPA3_0035     FALSE 0.072 104.000 0.000 NA   NA
 5730654 5730655 UPA3_0035 UPA3_0036     FALSE 0.071 253.000 0.000 NA   NA
 5730656 5730657 UPA3_0037 UPA3_0038   gidA TRUE 0.578 76.000 0.002 1.000 N NA
 5730657 5730658 UPA3_0038 UPA3_0039 gidA gidB TRUE 0.955 -7.000 0.466 1.000 N NA
 5730658 5730659 UPA3_0039 UPA3_0040 gidB   TRUE 0.860 23.000 0.002 NA   NA
 5730659 5730660 UPA3_0040 UPA3_0041     TRUE 0.869 0.000 0.033 NA   NA
 5730660 5730661 UPA3_0041 UPA3_0042     FALSE 0.431 167.000 0.033 NA   NA
 5730661 5730662 UPA3_0042 UPA3_0043     TRUE 0.972 23.000 0.500 NA   NA
 5730662 5730663 UPA3_0043 UPA3_0044     TRUE 0.957 31.000 0.667 NA   NA
 5730663 5730664 UPA3_0044 UPA3_0045     TRUE 0.941 37.000 0.667 NA   NA
 5730664 5730665 UPA3_0045 UPA3_0046     TRUE 0.984 15.000 1.000 NA   NA
 5730665 5730666 UPA3_0046 UPA3_0047     TRUE 0.936 33.000 0.250 NA   NA
 5730666 5730667 UPA3_0047 UPA3_0048     TRUE 0.863 -13.000 0.250 NA   NA
 5730667 5730668 UPA3_0048 UPA3_0049     TRUE 0.939 3.000 0.250 NA   NA
 5730668 5730669 UPA3_0049 UPA3_0050     TRUE 0.925 -10.000 1.000 NA   NA
 5730669 5730670 UPA3_0050 UPA3_0051     TRUE 0.897 -10.000 0.500 NA   NA
 5730670 5730671 UPA3_0051 UPA3_0052     TRUE 0.973 16.000 0.286 NA   NA
 5730671 5730672 UPA3_0052 UPA3_0053     TRUE 0.983 0.000 1.000 0.025 Y NA
 5730672 5730673 UPA3_0053 UPA3_0054     FALSE 0.261 265.000 0.000 1.000 N NA
 5730673 5730674 UPA3_0054 UPA3_0055     TRUE 0.726 95.000 0.667 1.000   NA
 5730674 5730675 UPA3_0055 UPA3_0056   rnr TRUE 0.815 1.000 0.003 1.000   NA
 5730675 5730676 UPA3_0056 UPA3_0057 rnr smpB TRUE 0.741 200.000 0.143 0.069 N NA
 5730676 5730677 UPA3_0057 UPA3_0058 smpB   TRUE 0.948 20.000 0.002 1.000 N NA
 5730677 5730678 UPA3_0058 UPA3_0059     TRUE 0.958 -25.000 0.400 0.007 Y NA
 5730678 5730679 UPA3_0059 UPA3_0060     TRUE 0.835 60.000 0.500 NA   NA
 5730679 5730680 UPA3_0060 UPA3_0061   lysS FALSE 0.241 110.000 0.003 NA   NA
 5730681 5730682 UPA3_0062 UPA3_0063     FALSE 0.063 168.000 0.000 NA   NA
 5730682 5730683 UPA3_0063 UPA3_0064   pepF1 TRUE 0.976 25.000 1.000 NA   NA
 5730685 5730686 UPA3_0066 UPA3_0067     TRUE 0.952 38.000 0.667 1.000   NA
 5730686 5730687 UPA3_0067 UPA3_0068     TRUE 0.580 91.000 0.030 1.000   NA
 5730687 5730688 UPA3_0068 UPA3_0069     TRUE 0.906 5.000 0.000 1.000 Y NA
 5730688 5730689 UPA3_0069 UPA3_0070     TRUE 0.663 19.000 0.000 NA   NA
 5730691 5730692 UPA3_0072 UPA3_0073   trxB TRUE 0.756 -34.000 0.018 NA   NA
 5730692 5730693 UPA3_0073 UPA3_0074 trxB lgt TRUE 0.985 19.000 0.101 1.000 N NA
 5730693 5730694 UPA3_0074 UPA3_0075 lgt hprK TRUE 0.953 1.000 0.064 1.000 N NA
 5730694 5730695 UPA3_0075 UPA3_0076 hprK tilS TRUE 0.947 15.000 0.002 1.000 N NA
 5730695 5730696 UPA3_0076 UPA3_0077 tilS pth TRUE 0.892 -28.000 0.025 1.000 N NA
 5730697 5730698 UPA3_0078 UPA3_0079 dnaN yaaA FALSE 0.362 138.000 0.005 1.000   NA
 5730698 5730699 UPA3_0079 UPA3_0080 yaaA gyrB TRUE 0.911 12.000 0.002 1.000   NA
 5730699 5730700 UPA3_0080 UPA3_0081 gyrB gyrA TRUE 0.991 22.000 0.306 0.010 Y NA
 5730700 5730701 UPA3_0081 UPA3_0082 gyrA   FALSE 0.184 108.000 0.002 NA   NA
 5730701 5730702 UPA3_0082 UPA3_0083   recA TRUE 0.673 39.000 0.002 NA   NA
 5730702 5730703 UPA3_0083 UPA3_0084 recA   TRUE 0.925 32.000 0.018 1.000   NA
 5730704 5730705 UPA3_0085 UPA3_0086     TRUE 0.976 17.000 0.500 NA   NA
 5730706 5730707 UPA3_0087 UPA3_0088     TRUE 0.963 8.000 0.100 NA   NA
 5730707 5730708 UPA3_0088 UPA3_0089     TRUE 0.977 9.000 0.604 NA   NA
 5730708 5730709 UPA3_0089 UPA3_0090     FALSE 0.097 82.000 0.000 NA   NA
 5730709 5730710 UPA3_0090 UPA3_0091     FALSE 0.075 97.000 0.000 NA   NA
 5730710 5730711 UPA3_0091 UPA3_0092   ffh FALSE 0.084 616.000 0.000 NA   NA
 5730711 5730712 UPA3_0092 UPA3_0093 ffh   FALSE 0.068 212.000 0.000 NA   NA
 5730712 5730713 UPA3_0093 UPA3_0094     TRUE 0.906 0.000 0.250 NA   NA
 5730713 5730714 UPA3_0094 UPA3_0095     TRUE 0.535 122.000 0.250 NA   NA
 5730715 5730716 UPA3_0096 UPA3_0097     FALSE 0.068 112.000 0.000 NA   NA
 5730716 5730717 UPA3_0097 UPA3_0098   hsdR FALSE 0.085 1069.000 0.000 NA   NA
 5730717 5730718 UPA3_0098 UPA3_0099 hsdR   TRUE 0.848 21.000 0.000 0.010   NA
 5730718 5730719 UPA3_0099 UPA3_0100     FALSE 0.166 138.000 0.000 0.010   NA
 5730720 5730721 UPA3_0101 UPA3_0102 hsdM   TRUE 0.906 4.000 0.000 0.100 Y NA
 5730721 5730722 UPA3_0102 UPA3_0103     TRUE 0.557 39.000 0.000 1.000   NA
 5730724 5730725 UPA3_0105 UPA3_0106 uvrA   TRUE 0.819 5.000 0.002 NA   NA
 5730725 5730726 UPA3_0106 UPA3_0107   hpt TRUE 0.925 27.000 0.021 NA   NA
 5730726 5730727 UPA3_0107 UPA3_0108 hpt   TRUE 0.981 5.000 0.192 1.000 N NA
 5730727 5730728 UPA3_0108 UPA3_0109   serS FALSE 0.448 111.000 0.003 1.000 N NA
 5730728 5730729 UPA3_0109 UPA3_0110 serS   FALSE 0.287 403.000 0.000 1.000 N NA
 5730729 5730730 UPA3_0110 UPA3_0111     TRUE 0.970 -16.000 0.928 0.043 Y NA
 5730730 5730731 UPA3_0111 UPA3_0112     TRUE 0.963 -13.000 0.492 0.043 Y NA
 5730731 5730732 UPA3_0112 UPA3_0113     TRUE 0.986 4.000 0.253 0.090 Y NA
 5730732 5730733 UPA3_0113 UPA3_0114     TRUE 0.454 98.000 0.022 NA   NA
 5730733 5730734 UPA3_0114 UPA3_0115     TRUE 0.607 63.000 0.011 NA   NA
 5730734 5730735 UPA3_0115 UPA3_0116     TRUE 0.957 24.000 0.005 1.000 N NA
 5730735 5730736 UPA3_0116 UPA3_0117     FALSE 0.071 244.000 0.000 NA   NA
 5730736 10756176 UPA3_0117 UPA3_0649     FALSE 0.074 288.000 0.000 NA   NA
 10756176 5730737 UPA3_0649 UPA3_0118   rrf FALSE 0.225 57.000 0.000 NA   NA
 5730737 5730738 UPA3_0118 UPA3_0119 rrf folA FALSE 0.061 143.000 0.000 NA   NA
 5730738 5730739 UPA3_0119 UPA3_0120 folA   TRUE 0.940 8.000 0.005 1.000   NA
 5730739 5730740 UPA3_0120 UPA3_0121     FALSE 0.225 57.000 0.000 NA   NA
 5730741 5730742 UPA3_0122 UPA3_0645 upp srpB FALSE 0.065 119.000 0.000 NA   NA
 5730742 5730743 UPA3_0645 UPA3_0123 srpB tyrS TRUE 0.613 24.000 0.000 NA   NA
 5730744 5730745 UPA3_0124 UPA3_0125   secA TRUE 0.978 17.000 0.017 1.000 N NA
 5730745 5730746 UPA3_0125 UPA3_0126 secA uvrB TRUE 0.924 3.000 0.004 1.000 N NA
 5730746 5730747 UPA3_0126 UPA3_0127 uvrB ligA TRUE 0.678 84.000 0.006 1.000 Y NA
 5730747 5730748 UPA3_0127 UPA3_0128 ligA   FALSE 0.070 237.000 0.000 NA   NA
 5730748 5730749 UPA3_0128 UPA3_0129   cysS TRUE 0.855 14.000 0.002 NA   NA
 5730749 5730750 UPA3_0129 UPA3_0130 cysS   TRUE 0.970 2.000 0.088 1.000 Y NA
 5730751 5730752 UPA3_0131 UPA3_0132     TRUE 0.983 12.000 1.000 NA   NA
 5730752 5730753 UPA3_0132 UPA3_0133     TRUE 0.658 127.000 1.000 NA   NA
 5730753 5730754 UPA3_0133 UPA3_0134   atpC FALSE 0.185 143.000 0.002 NA   NA
 5730754 5730755 UPA3_0134 UPA3_0135 atpC atpD TRUE 0.981 0.000 0.837 0.023 Y NA
 5730755 5730756 UPA3_0135 UPA3_0136 atpD atpG TRUE 0.990 27.000 0.724 0.023 Y NA
 5730756 5730757 UPA3_0136 UPA3_0137 atpG   TRUE 0.715 2.000 0.002 NA   NA
 5730757 5730758 UPA3_0137 UPA3_0138     TRUE 0.657 0.000 0.002 NA   NA
 5730758 5730759 UPA3_0138 UPA3_0139     TRUE 0.975 3.000 0.864 0.023   NA
 5730759 5730760 UPA3_0139 UPA3_0140   atpH TRUE 0.950 10.000 0.004 0.023   NA
 5730760 5730761 UPA3_0140 UPA3_0141 atpH atpF TRUE 0.980 4.000 0.022 0.023 Y NA
 5730761 5730762 UPA3_0141 UPA3_0142 atpF   TRUE 0.840 69.000 0.500 0.023   NA
 5730762 5730763 UPA3_0142 UPA3_0143   atpB TRUE 0.905 49.000 0.085 0.025   NA
 5730763 5730764 UPA3_0143 UPA3_0144 atpB   TRUE 0.878 26.000 0.005 NA   NA
 5730765 5730766 UPA3_0145 UPA3_0146     TRUE 0.498 62.000 0.003 NA   NA
 5730766 5730767 UPA3_0146 UPA3_0147   ftsY TRUE 0.974 3.000 0.165 0.030 N NA
 5730767 5730768 UPA3_0147 UPA3_0148 ftsY   TRUE 0.890 -10.000 0.081 1.000   NA
 5730770 5730771 UPA3_0150 UPA3_0151     FALSE 0.432 2.000 0.000 NA   NA
 5730773 5730774 UPA3_0153 UPA3_0154     TRUE 0.925 -10.000 1.000 NA   NA
 5730774 5730775 UPA3_0154 UPA3_0155     TRUE 0.913 -16.000 1.000 NA   NA
 5730775 5730776 UPA3_0155 UPA3_0156     TRUE 0.956 2.000 1.000 NA   NA
 5730776 5730777 UPA3_0156 UPA3_0157     TRUE 0.979 6.000 1.000 NA   NA
 5730777 5730778 UPA3_0157 UPA3_0158     TRUE 0.981 22.000 1.000 NA   NA
 5730778 5730779 UPA3_0158 UPA3_0159     TRUE 0.901 -43.000 1.000 NA   NA
 5730779 5730780 UPA3_0159 UPA3_0160     TRUE 0.934 -7.000 1.000 NA   NA
 5730780 5730781 UPA3_0160 UPA3_0161     TRUE 0.925 -10.000 1.000 NA   NA
 5730781 5730782 UPA3_0161 UPA3_0162   bet TRUE 0.873 0.000 0.040 NA   NA
 5730782 5730783 UPA3_0162 UPA3_0163 bet   TRUE 0.835 -10.000 0.040 NA   NA
 5730783 5730784 UPA3_0163 UPA3_0164     TRUE 0.925 -10.000 1.000 NA   NA
 5730784 5730785 UPA3_0164 UPA3_0165     TRUE 0.911 -18.000 1.000 NA   NA
 5730786 5730787 UPA3_0166 UPA3_0167     TRUE 0.903 -31.000 1.000 NA   NA
 5730787 5730788 UPA3_0167 UPA3_0168     TRUE 0.925 -10.000 1.000 NA   NA
 5730788 5730789 UPA3_0168 UPA3_0169     TRUE 0.592 5.000 0.000 NA   NA
 5730789 5730790 UPA3_0169 UPA3_0170     FALSE 0.368 0.000 0.000 NA   NA
 5730790 5730791 UPA3_0170 UPA3_0171     TRUE 0.655 161.000 1.000 NA   NA
 5730791 5730792 UPA3_0171 UPA3_0172     TRUE 0.983 16.000 1.000 NA   NA
 5730792 5730793 UPA3_0172 UPA3_0173     TRUE 0.964 3.000 1.000 NA   NA
 5730793 5730794 UPA3_0173 UPA3_0174     TRUE 0.669 11.000 0.000 NA   NA
 5730794 5730795 UPA3_0174 UPA3_0175     FALSE 0.330 -7.000 0.000 NA   NA
 5730795 5730796 UPA3_0175 UPA3_0176     TRUE 0.907 -10.000 0.667 NA   NA
 5730796 5730797 UPA3_0176 UPA3_0177     FALSE 0.078 357.000 0.000 NA   NA
 5730797 5730798 UPA3_0177 UPA3_0178     FALSE 0.082 444.000 0.000 NA   NA
 5730800 5730801 UPA3_0180 UPA3_0181     TRUE 0.656 76.000 0.111 NA   NA
 5730801 5730802 UPA3_0181 UPA3_0182   trpS TRUE 0.907 26.000 0.004 1.000   NA
 5730803 5730804 UPA3_0183 UPA3_0184     TRUE 0.940 -10.000 0.222 1.000 N NA
 5730804 5730805 UPA3_0184 UPA3_0185     TRUE 0.956 3.000 0.261 1.000   NA
 5730805 5730806 UPA3_0185 UPA3_0186     TRUE 0.606 81.000 0.087 NA   NA
 5730808 5730809 UPA3_0188 UPA3_0189 tpiA gpmI TRUE 0.977 17.000 0.006 1.000 Y NA
 5730809 5730810 UPA3_0189 UPA3_0190 gpmI   TRUE 0.668 47.000 0.003 NA   NA
 5730810 5730811 UPA3_0190 UPA3_0191   eno TRUE 0.593 103.000 0.400 NA   NA
 5730811 5730812 UPA3_0191 UPA3_0192 eno   TRUE 0.957 -31.000 0.400 0.011 Y NA
 5730812 5730813 UPA3_0192 UPA3_0193   pyk TRUE 0.987 12.000 0.019 0.011 Y NA
 5730813 5730814 UPA3_0193 UPA3_0194 pyk rpoB FALSE 0.366 123.000 0.002 1.000 N NA
 5730814 5730815 UPA3_0194 UPA3_0195 rpoB rpoC TRUE 0.994 22.000 0.851 0.006 Y NA
 5730815 5730816 UPA3_0195 UPA3_0196 rpoC   FALSE 0.184 123.000 0.002 NA   NA
 5730818 5730819 UPA3_0198 UPA3_0199   prs TRUE 0.973 20.000 0.080 1.000   NA
 5730819 5730820 UPA3_0199 UPA3_0200 prs   TRUE 0.980 7.000 0.040 1.000 N NA
 5730820 5730821 UPA3_0200 UPA3_0201     TRUE 0.903 4.000 0.004 1.000   NA
 5730821 5730822 UPA3_0201 UPA3_0202     TRUE 0.841 2.000 0.003 1.000   NA
 5730822 5730823 UPA3_0202 UPA3_0203   metG TRUE 0.960 20.000 0.003 1.000 N NA
 5730823 5730824 UPA3_0203 UPA3_0204 metG   TRUE 0.485 88.000 0.005 NA N NA
 5730824 5730825 UPA3_0204 UPA3_0205     TRUE 0.961 0.000 0.467 NA Y NA
 5730825 5730826 UPA3_0205 UPA3_0206   pstB TRUE 0.989 5.000 0.226 0.004 Y NA
 5730826 5730827 UPA3_0206 UPA3_0207 pstB   TRUE 0.984 24.000 0.258 NA Y NA
 5730827 5730828 UPA3_0207 UPA3_0208     TRUE 0.698 160.000 0.200 NA Y NA
 5730828 5730829 UPA3_0208 UPA3_0209     TRUE 0.969 4.000 0.006 0.004 Y NA
 5730830 5730831 UPA3_0210 UPA3_0211 rpsO rnc FALSE 0.390 111.000 0.002 1.000 N NA
 5730831 5730832 UPA3_0211 UPA3_0212 rnc plsX TRUE 0.909 -10.000 0.020 1.000 N NA
 5730832 5730833 UPA3_0212 UPA3_0213 plsX   TRUE 0.953 5.000 0.021 1.000   NA
 5730833 5730834 UPA3_0213 UPA3_0214     TRUE 0.930 15.000 0.006 NA   NA
 5730834 5730835 UPA3_0214 UPA3_0215     TRUE 0.688 105.000 1.000 NA   NA
 5730837 5730838 UPA3_0217 UPA3_0218 rpmA   TRUE 0.983 6.000 0.203 NA Y NA
 5730838 5730839 UPA3_0218 UPA3_0219   rplU TRUE 0.983 6.000 0.208 NA Y NA
 5730840 5730841 UPA3_0220 UPA3_0221 gmk   TRUE 0.625 -19.000 0.003 NA   NA
 5730841 5730842 UPA3_0221 UPA3_0222     TRUE 0.854 4.000 0.003 NA   NA
 5730842 5730843 UPA3_0222 UPA3_0223     TRUE 0.986 6.000 0.093 1.000 Y NA
 5730843 5730844 UPA3_0223 UPA3_0224   rsgA TRUE 0.932 3.000 0.024 1.000   NA
 5730844 5730845 UPA3_0224 UPA3_0225 rsgA   FALSE 0.304 146.000 0.003 1.000   NA
 5730845 5730846 UPA3_0225 UPA3_0226     TRUE 0.875 174.000 1.000 0.004 Y NA
 5730846 5730847 UPA3_0226 UPA3_0227     FALSE 0.069 110.000 0.000 NA   NA
 5730847 5730848 UPA3_0227 UPA3_0228   fhs TRUE 0.676 15.000 0.000 NA   NA
 5730848 5730849 UPA3_0228 UPA3_0229 fhs   TRUE 0.752 130.000 0.500 1.000 N NA
 5730849 5730850 UPA3_0229 UPA3_0230     FALSE 0.126 119.000 0.000 1.000   NA
 5730850 5730851 UPA3_0230 UPA3_0231     TRUE 0.661 178.000 1.000 NA   NA
 5730851 5730852 UPA3_0231 UPA3_0232     TRUE 0.892 57.000 1.000 NA   NA
 5730852 5730853 UPA3_0232 UPA3_0233     TRUE 0.655 135.000 1.000 NA   NA
 5730853 5730854 UPA3_0233 UPA3_0234     TRUE 0.660 175.000 1.000 NA   NA
 5730854 5730855 UPA3_0234 UPA3_0235   infC FALSE 0.252 198.000 0.002 1.000   NA
 5730855 5730856 UPA3_0235 UPA3_0236 infC rpmI TRUE 0.993 15.000 0.652 1.000 Y NA
 5730856 5730857 UPA3_0236 UPA3_0237 rpmI rplT TRUE 0.967 55.000 0.928 0.075 Y NA
 5730857 5730858 UPA3_0237 UPA3_0238 rplT rpsJ FALSE 0.329 219.000 0.000 1.000 Y NA
 5730858 5730859 UPA3_0238 UPA3_0239 rpsJ rplC TRUE 0.988 25.000 0.467 1.000 Y NA
 5730859 5730860 UPA3_0239 UPA3_0240 rplC rplD TRUE 0.993 11.000 0.544 0.075 Y NA
 5730860 5730861 UPA3_0240 UPA3_0241 rplD rplW TRUE 0.980 3.000 0.307 1.000 Y NA
 5730861 5730862 UPA3_0241 UPA3_0242 rplW rplB TRUE 0.962 54.000 0.849 1.000 Y NA
 5730862 5730863 UPA3_0242 UPA3_0243 rplB rpsS TRUE 0.993 21.000 0.820 1.000 Y NA
 5730863 5730864 UPA3_0243 UPA3_0244 rpsS   TRUE 0.983 22.000 0.769 1.000   NA
 5730864 5730865 UPA3_0244 UPA3_0245   rpsC TRUE 0.984 20.000 0.719 1.000   NA
 5730865 5730866 UPA3_0245 UPA3_0246 rpsC rplP TRUE 0.994 15.000 0.828 1.000 Y NA
 5730866 5730867 UPA3_0246 UPA3_0247 rplP rpmC TRUE 0.980 0.000 0.802 0.075 Y NA
 5730867 5730868 UPA3_0247 UPA3_0248 rpmC rpsQ TRUE 0.980 0.000 0.828 0.075 Y NA
 5730868 5730869 UPA3_0248 UPA3_0249 rpsQ rplN TRUE 0.993 20.000 0.791 1.000 Y NA
 5730869 5730870 UPA3_0249 UPA3_0250 rplN rplX TRUE 0.993 15.000 0.810 1.000 Y NA
 5730870 5730871 UPA3_0250 UPA3_0251 rplX   TRUE 0.994 17.000 0.758 0.075 Y NA
 5730871 5730872 UPA3_0251 UPA3_0252   rpsN TRUE 0.988 4.000 0.496 0.075 Y NA
 5730872 5730873 UPA3_0252 UPA3_0253 rpsN rpsH TRUE 0.993 11.000 0.473 0.075 Y NA
 5730873 5730874 UPA3_0253 UPA3_0254 rpsH   TRUE 0.994 9.000 0.808 0.075 Y NA
 5730874 5730875 UPA3_0254 UPA3_0255   rplR TRUE 0.994 19.000 0.815 0.075 Y NA
 5730875 5730876 UPA3_0255 UPA3_0256 rplR rpsE TRUE 0.993 18.000 0.814 1.000 Y NA
 5730876 5730877 UPA3_0256 UPA3_0257 rpsE rplO TRUE 0.989 17.000 0.148 1.000 Y NA
 5730877 5730878 UPA3_0257 UPA3_0258 rplO   TRUE 0.949 53.000 0.730 1.000 N NA
 5730878 5730879 UPA3_0258 UPA3_0259   adk TRUE 0.986 9.000 0.241 1.000 N NA
 5730879 5730880 UPA3_0259 UPA3_0260 adk map TRUE 0.976 25.000 0.041 1.000 N NA
 5730880 5730881 UPA3_0260 UPA3_0261 map infA TRUE 0.977 28.000 0.051 1.000 Y NA
 5730881 5730882 UPA3_0261 UPA3_0262 infA rpmJ TRUE 0.969 24.000 0.104 1.000   NA
 5730882 5730883 UPA3_0262 UPA3_0263 rpmJ rpsM TRUE 0.973 25.000 0.194 0.075   NA
 5730883 5730884 UPA3_0263 UPA3_0264 rpsM rpsK TRUE 0.993 22.000 0.810 0.075 Y NA
 5730884 5730885 UPA3_0264 UPA3_0265 rpsK rpoA TRUE 0.966 37.000 0.308 1.000 N NA
 5730885 5730886 UPA3_0265 UPA3_0266 rpoA rplQ TRUE 0.984 28.000 0.873 1.000 N NA
 5730886 5730887 UPA3_0266 UPA3_0267 rplQ   FALSE 0.072 267.000 0.000 NA   NA
 5730887 5730888 UPA3_0267 UPA3_0268     TRUE 0.639 7.000 0.000 NA   NA
 5730888 5730889 UPA3_0268 UPA3_0269     TRUE 0.766 67.000 0.500 NA   NA
 5730889 5730890 UPA3_0269 UPA3_0270     TRUE 0.709 -10.000 0.005 NA   NA
 5730891 5730892 UPA3_0271 UPA3_0272     FALSE 0.067 211.000 0.000 NA   NA
 5730893 5730894 UPA3_0273 UPA3_0274     TRUE 0.906 5.000 0.007 NA   NA
 5730894 5730895 UPA3_0274 UPA3_0275   valS TRUE 0.809 -19.000 0.013 1.000   NA
 5730895 5730896 UPA3_0275 UPA3_0276 valS   TRUE 0.954 5.000 0.002 1.000 Y NA
 5730896 5730897 UPA3_0276 UPA3_0277   trmB TRUE 0.928 6.000 0.005 1.000   NA
 5730897 5730898 UPA3_0277 UPA3_0278 trmB   FALSE 0.413 37.000 0.000 NA   NA
 5730898 5730899 UPA3_0278 UPA3_0279     FALSE 0.063 131.000 0.000 NA   NA
 5730899 5730900 UPA3_0279 UPA3_0280     TRUE 0.908 54.000 1.000 NA   NA
 5730900 5730901 UPA3_0280 UPA3_0281     TRUE 0.728 -22.000 0.011 NA   NA
 5730901 5730902 UPA3_0281 UPA3_0283     TRUE 0.940 10.000 0.011 NA   NA
 5730903 5730904 UPA3_0282 UPA3_0284     TRUE 0.954 15.000 0.021 NA   NA
 5730905 5730906 UPA3_0285 UPA3_0286     TRUE 0.889 3.000 0.013 NA   NA
 5730906 5730907 UPA3_0286 UPA3_0287   rpsU TRUE 0.619 76.000 0.013 1.000   NA
 5730907 5730908 UPA3_0287 UPA3_0288 rpsU argS FALSE 0.248 124.000 0.002 1.000   NA
 5730908 5730909 UPA3_0288 UPA3_0289 argS pgk TRUE 0.880 3.000 0.002 1.000 N NA
 5730909 5730910 UPA3_0289 UPA3_0290 pgk   TRUE 0.904 4.000 0.002 NA Y NA
 5730910 5730911 UPA3_0290 UPA3_0291   deoD TRUE 0.870 74.000 1.000 NA N NA
 5730911 5730912 UPA3_0291 UPA3_0292 deoD   TRUE 0.807 96.000 0.667 1.000 N NA
 5730912 5730913 UPA3_0292 UPA3_0293     TRUE 0.701 100.000 0.065 1.000 N NA
 5730913 5730914 UPA3_0293 UPA3_0294   pyrG TRUE 0.867 0.000 0.003 1.000 N NA
 5730914 5730915 UPA3_0294 UPA3_0295 pyrG hisS TRUE 0.907 4.000 0.002 1.000 N NA
 5730915 5730916 UPA3_0295 UPA3_0296 hisS aspS TRUE 0.989 6.000 0.161 0.067 Y NA
 5730916 5730917 UPA3_0296 UPA3_0297 aspS   TRUE 0.576 -7.000 0.002 NA   NA
 5730917 5730918 UPA3_0297 UPA3_0298   msrA TRUE 0.779 41.000 0.006 NA   NA
 5730919 5730920 UPA3_0299 UPA3_0300     TRUE 0.786 7.000 0.000 1.000   NA
 5730921 5730922 UPA3_0301 UPA3_0302     TRUE 0.654 158.000 1.000 NA   NA
 5730922 5730923 UPA3_0302 UPA3_0303     TRUE 0.886 10.000 0.002 NA   NA
 5730923 5730924 UPA3_0303 UPA3_0305     TRUE 0.696 0.000 0.002 NA   NA
 5730926 5730927 UPA3_0306 UPA3_0307 efp   TRUE 0.719 3.000 0.002 NA   NA
 5730927 5730928 UPA3_0307 UPA3_0308   nusB TRUE 0.909 3.000 0.027 NA   NA
 5730928 5730929 UPA3_0308 UPA3_0309 nusB   TRUE 0.911 6.000 0.006 NA   NA
 5730929 5730930 UPA3_0309 UPA3_0311     TRUE 0.864 27.000 0.004 NA   NA
 5730932 10756177 UPA3_0312 UPA3_0648     FALSE 0.074 288.000 0.000 NA   NA
 10756177 5730933 UPA3_0648 UPA3_0314   greA FALSE 0.073 272.000 0.000 NA   NA
 5730933 5730934 UPA3_0314 UPA3_0315 greA   FALSE 0.105 79.000 0.000 NA   NA
 5730934 5730935 UPA3_0315 UPA3_0316     TRUE 0.548 4.000 0.000 NA   NA
 5730935 5730936 UPA3_0316 UPA3_0317     FALSE 0.144 66.000 0.000 NA   NA
 5730936 5730937 UPA3_0317 UPA3_0318     FALSE 0.207 59.000 0.000 NA   NA
 5730937 5730938 UPA3_0318 UPA3_0319     TRUE 0.480 3.000 0.000 NA   NA
 5730938 5730939 UPA3_0319 UPA3_0320     FALSE 0.163 63.000 0.000 NA   NA
 5730939 5730940 UPA3_0320 UPA3_0321     TRUE 0.818 44.000 0.004 0.083   NA
 5730941 5730942 UPA3_0322 UPA3_0323     TRUE 0.980 3.000 0.817 NA Y NA
 5730944 5730945 UPA3_0325 UPA3_0326 rpsT   FALSE 0.158 589.000 0.000 1.000   NA
 5730945 5730946 UPA3_0326 UPA3_0327     TRUE 0.882 -22.000 0.209 1.000   NA
 5730946 5730947 UPA3_0327 UPA3_0328     TRUE 0.882 -7.000 0.006 1.000 N NA
 5730947 5730948 UPA3_0328 UPA3_0329     TRUE 0.973 24.000 0.018 1.000 N NA
 5730948 5730949 UPA3_0329 UPA3_0330   ppa TRUE 0.927 0.000 0.015 1.000 N NA
 5730950 5730951 UPA3_0331 UPA3_0332     FALSE 0.074 287.000 0.000 NA   NA
 5730951 5730952 UPA3_0332 UPA3_0333   nusA FALSE 0.235 113.000 0.002 1.000   NA
 5730952 5730953 UPA3_0333 UPA3_0334 nusA   TRUE 0.988 11.000 0.323 NA Y NA
 5730953 5730954 UPA3_0334 UPA3_0335   infB TRUE 0.953 35.000 0.171 NA N NA
 5730954 5730955 UPA3_0335 UPA3_0336 infB rbfA TRUE 0.991 8.000 0.530 1.000 Y NA
 5730955 5730956 UPA3_0336 UPA3_0337 rbfA   TRUE 0.866 8.000 0.002 NA   NA
 5730957 5730958 UPA3_0338 UPA3_0339   lepA TRUE 0.850 13.000 0.002 NA   NA
 5730958 5730959 UPA3_0339 UPA3_0340 lepA   FALSE 0.234 118.000 0.003 NA   NA
 5730960 5730961 UPA3_0341 UPA3_0342     TRUE 0.875 4.000 0.005 NA   NA
 5730961 5730962 UPA3_0342 UPA3_0343     TRUE 0.782 -16.000 0.002 1.000 N NA
 5730962 5730963 UPA3_0343 UPA3_0344     FALSE 0.062 157.000 0.000 NA   NA
 5730963 5730964 UPA3_0344 UPA3_0345     FALSE 0.408 1.000 0.000 NA   NA
 5730964 5730965 UPA3_0345 UPA3_0346     FALSE 0.077 332.000 0.000 NA   NA
 5730966 5730967 UPA3_0347 UPA3_0348   udk TRUE 0.857 29.000 0.005 NA   NA
 5730968 5730969 UPA3_0349 UPA3_0350 rpmF   TRUE 0.872 9.000 0.002 NA   NA
 5730969 5730970 UPA3_0350 UPA3_0351     TRUE 0.667 119.000 1.000 NA   NA
 5730970 5730971 UPA3_0351 UPA3_0352     TRUE 0.978 24.000 1.000 NA   NA
 5730971 5730972 UPA3_0352 UPA3_0353     TRUE 0.651 58.000 0.009 NA   NA
 5730972 5730973 UPA3_0353 UPA3_0354     TRUE 0.464 77.000 0.009 NA   NA
 5730973 5730974 UPA3_0354 UPA3_0355   dnaK FALSE 0.155 176.000 0.002 NA   NA
 5730974 5730975 UPA3_0355 UPA3_0356 dnaK   FALSE 0.164 112.000 0.002 NA   NA
 5730975 5730976 UPA3_0356 UPA3_0357     TRUE 0.953 37.000 1.000 NA   NA
 5730976 5730977 UPA3_0357 UPA3_0358   cmk TRUE 0.699 0.000 0.002 NA   NA
 5730977 5730978 UPA3_0358 UPA3_0359 cmk   FALSE 0.332 77.000 0.002 NA   NA
 5730978 5730979 UPA3_0359 UPA3_0360     TRUE 0.815 52.000 0.043 NA   NA
 5730979 5730980 UPA3_0360 UPA3_0361   scpA FALSE 0.391 141.000 0.019 NA   NA
 5730980 5730981 UPA3_0361 UPA3_0362 scpA   TRUE 0.912 -7.000 0.570 NA   NA
 5730981 5730982 UPA3_0362 UPA3_0363   tig FALSE 0.375 95.000 0.002 NA N NA
 5730982 5730983 UPA3_0363 UPA3_0364 tig lon TRUE 0.650 147.000 0.014 1.000 Y NA
 5730983 5730984 UPA3_0364 UPA3_0365 lon   TRUE 0.728 86.000 0.045 1.000 N NA
 5730984 5730985 UPA3_0365 UPA3_0366     TRUE 0.819 -16.000 0.053 NA   NA
 5730985 5730986 UPA3_0366 UPA3_0367     TRUE 0.858 -19.000 0.283 NA   NA
 5730987 5730988 UPA3_0368 UPA3_0369     FALSE 0.069 227.000 0.000 NA   NA
 5730989 5730990 UPA3_0370 UPA3_0371 truB   TRUE 0.929 -34.000 0.308 1.000 N NA
 5730990 5730991 UPA3_0371 UPA3_0372     FALSE 0.241 143.000 0.003 NA   NA
 5730991 5730992 UPA3_0372 UPA3_0373     TRUE 0.676 15.000 0.000 NA   NA
 5730992 5730993 UPA3_0373 UPA3_0374     TRUE 0.981 6.000 0.012 0.034 Y NA
 5730993 5730994 UPA3_0374 UPA3_0375     FALSE 0.349 149.000 0.012 NA   NA
 5730994 5730995 UPA3_0375 UPA3_0376     TRUE 0.717 93.000 1.000 NA   NA
 5730995 5730996 UPA3_0376 UPA3_0377     FALSE 0.062 158.000 0.000 NA   NA
 5730997 5730998 UPA3_0378 UPA3_0379   asnA TRUE 0.944 32.000 0.011 1.000 N NA
 5730998 5730999 UPA3_0379 UPA3_0380 asnA pgsA TRUE 0.785 -22.000 0.002 1.000 N NA
 5730999 5731000 UPA3_0380 UPA3_0381 pgsA asnS TRUE 0.875 -10.000 0.007 1.000 N NA
 5731000 5731001 UPA3_0381 UPA3_0382 asnS   FALSE 0.320 94.000 0.005 NA   NA
 5731001 5731002 UPA3_0382 UPA3_0383     FALSE 0.062 140.000 0.000 NA   NA
 5731003 5731004 UPA3_0384 UPA3_0385 pdp alaS TRUE 0.907 31.000 0.002 1.000 N NA
 5731004 5731005 UPA3_0385 UPA3_0386 alaS   TRUE 0.928 -7.000 0.032 1.000 N NA
 5731005 5731006 UPA3_0386 UPA3_0387   leuS TRUE 0.960 16.000 0.003 1.000 N NA
 5731007 5731008 UPA3_0388 UPA3_0389     FALSE 0.080 394.000 0.000 NA   NA
 5731008 5731009 UPA3_0389 UPA3_0390     FALSE 0.066 199.000 0.000 NA   NA
 5731012 5731013 UPA3_0393 UPA3_0394 polC   FALSE 0.066 115.000 0.000 NA   NA
 5731014 5731015 UPA3_0395 UPA3_0396     TRUE 0.929 0.000 0.667 NA   NA
 5731015 5731016 UPA3_0396 UPA3_0397   uvrC FALSE 0.250 168.000 0.002 1.000   NA
 5731016 5731017 UPA3_0397 UPA3_0398 uvrC   TRUE 0.842 0.000 0.002 1.000 N NA
 5731017 5731018 UPA3_0398 UPA3_0399     TRUE 0.971 8.000 0.068 1.000   NA
 5731019 5731020 UPA3_0400 UPA3_0401   mraZ FALSE 0.332 76.000 0.002 NA   NA
 5731020 5731021 UPA3_0401 UPA3_0402 mraZ mraW TRUE 0.904 -10.000 0.635 NA   NA
 5731021 5731022 UPA3_0402 UPA3_0403 mraW   TRUE 0.870 19.000 0.002 NA   NA
 5731022 5731023 UPA3_0403 UPA3_0404     TRUE 0.593 96.000 0.286 NA   NA
 5731023 5731024 UPA3_0404 UPA3_0405     TRUE 0.962 5.000 0.286 NA   NA
 5731024 5731025 UPA3_0405 UPA3_0406     TRUE 0.842 61.000 0.667 NA   NA
 5731025 5731026 UPA3_0406 UPA3_0407     TRUE 0.482 107.000 0.051 NA   NA
 5731026 5731027 UPA3_0407 UPA3_0408     FALSE 0.446 154.000 0.051 NA   NA
 5731028 5731029 UPA3_0409 UPA3_0410 acpS   TRUE 0.874 5.000 0.003 NA   NA
 5731029 5731030 UPA3_0410 UPA3_0411     TRUE 0.742 51.000 0.011 NA   NA
 5731030 5731031 UPA3_0411 UPA3_0412     TRUE 0.956 2.000 1.000 NA   NA
 5731031 5731032 UPA3_0412 UPA3_0413   rnhC TRUE 0.759 50.000 0.011 NA   NA
 5731034 5731035 UPA3_0415 UPA3_0416     TRUE 0.989 3.000 1.000 0.032 Y NA
 5731035 5731036 UPA3_0416 UPA3_0417     TRUE 0.983 11.000 1.000 NA   NA
 5731036 5731037 UPA3_0417 UPA3_0418   trmU FALSE 0.339 81.000 0.003 NA   NA
 5731039 5731040 UPA3_0420 UPA3_0421     TRUE 0.772 60.000 0.019 1.000   NA
 5731042 5731043 UPA3_0423 UPA3_0424 grpE dnaJ TRUE 0.936 0.000 0.005 0.011 Y NA
 5731043 5731044 UPA3_0424 UPA3_0425 dnaJ   FALSE 0.247 128.000 0.004 NA   NA
 5731044 5731045 UPA3_0425 UPA3_0426     TRUE 0.865 -19.000 0.333 NA   NA
 5731046 5731047 UPA3_0427 UPA3_0428 ileS   TRUE 0.930 4.000 0.002 0.014 N NA
 5731047 5731048 UPA3_0428 UPA3_0429   metK TRUE 0.884 0.000 0.004 1.000 N NA
 5731049 5731050 UPA3_0430 UPA3_0431   mutM FALSE 0.163 63.000 0.000 NA   NA
 5731050 5731051 UPA3_0431 UPA3_0432 mutM exo TRUE 0.929 42.000 0.010 1.000 Y NA
 5731051 5731052 UPA3_0432 UPA3_0433 exo   TRUE 0.985 4.000 0.119 0.014 Y NA
 5731052 5731053 UPA3_0433 UPA3_0434     TRUE 0.843 0.000 0.016 NA   NA
 5731053 5731054 UPA3_0434 UPA3_0435     TRUE 0.610 85.000 0.222 NA   NA
 5731054 5731055 UPA3_0435 UPA3_0436   thiI TRUE 0.961 18.000 0.014 1.000   NA
 5731055 5731056 UPA3_0436 UPA3_0437 thiI   TRUE 0.789 -22.000 0.011 1.000   NA
 5731057 5731058 UPA3_0438 UPA3_0439   hrcA TRUE 0.624 -13.000 0.003 NA   NA
 5731058 5731059 UPA3_0439 UPA3_0440 hrcA   TRUE 0.653 -10.000 0.003 NA   NA
 5731059 5731060 UPA3_0440 UPA3_0441     TRUE 0.949 12.000 0.015 NA   NA
 5731060 5731061 UPA3_0441 UPA3_0442     TRUE 0.834 -7.000 0.022 NA   NA
 5731063 5731064 UPA3_0444 UPA3_0445     FALSE 0.225 57.000 0.000 NA   NA
 5731065 5731066 UPA3_0446 UPA3_0447   ureD TRUE 0.600 107.000 0.012 1.000 N NA
 5731066 5731067 UPA3_0447 UPA3_0448 ureD ureG TRUE 0.993 10.000 0.337 0.016 Y NA
 5731067 5731068 UPA3_0448 UPA3_0449 ureG   TRUE 0.881 82.000 0.439 0.016 Y NA
 5731068 5731069 UPA3_0449 UPA3_0450     TRUE 0.963 -13.000 0.460 0.016 Y NA
 5731069 5731070 UPA3_0450 UPA3_0451   ureC TRUE 0.872 65.000 0.087 0.009 N NA
 5731070 5731071 UPA3_0451 UPA3_0452 ureC ureB TRUE 0.953 46.000 0.029 0.005 Y NA
 5731071 5731072 UPA3_0452 UPA3_0453 ureB ureA TRUE 0.930 47.000 0.010 0.005 Y NA
 5731072 5731073 UPA3_0453 UPA3_0454 ureA   FALSE 0.092 84.000 0.000 NA   NA
 5731074 5731075 UPA3_0455 UPA3_0456   rrmJ TRUE 0.565 83.000 0.003 1.000 N NA
 5731075 5731076 UPA3_0456 UPA3_0457 rrmJ   TRUE 0.872 -10.000 0.006 1.000 N NA
 5731079 5731080 UPA3_0460 UPA3_0461     FALSE 0.240 -52.000 0.000 NA   NA
 5731080 5731081 UPA3_0461 UPA3_0462     FALSE 0.241 -46.000 0.000 NA   NA
 5731081 5731082 UPA3_0462 UPA3_0463     FALSE 0.079 391.000 0.000 NA   NA
 5731082 5731083 UPA3_0463 UPA3_0464     FALSE 0.062 156.000 0.000 NA   NA
 5731083 5731084 UPA3_0464 UPA3_0465     FALSE 0.065 192.000 0.000 NA   NA
 5731086 5731087 UPA3_0467 UPA3_0468 ruvB   TRUE 0.970 -10.000 0.549 0.009 Y NA
 5731087 5731088 UPA3_0468 UPA3_0469     TRUE 0.669 42.000 0.002 NA   NA
 5731088 5731089 UPA3_0469 UPA3_0470     TRUE 0.677 80.000 0.333 NA   NA
 5731089 5731090 UPA3_0470 UPA3_0471   proS FALSE 0.302 97.000 0.004 NA   NA
 5731090 5731091 UPA3_0471 UPA3_0472 proS   TRUE 0.948 26.000 0.004 1.000 N NA
 5731091 5731092 UPA3_0472 UPA3_0473     TRUE 0.916 -13.000 0.053 1.000 N NA
 5731093 5731094 UPA3_0474 UPA3_0475     TRUE 0.911 0.000 0.286 NA   NA
 5731095 5731096 UPA3_0476 UPA3_0477 pheT pheS TRUE 0.986 32.000 0.574 0.003 Y NA
 5731096 5731097 UPA3_0477 UPA3_0478 pheS   TRUE 0.821 7.000 0.002 NA   NA
 5731097 5731098 UPA3_0478 UPA3_0479   nadE TRUE 0.779 -7.000 0.009 NA   NA
 5731098 5731099 UPA3_0479 UPA3_0480 nadE   TRUE 0.898 8.000 0.002 1.000   NA
 5731099 5731100 UPA3_0480 UPA3_0481     TRUE 0.803 3.000 0.003 NA   NA
 5731100 5731101 UPA3_0481 UPA3_0482   fmt FALSE 0.314 67.000 0.002 NA   NA
 5731101 5731102 UPA3_0482 UPA3_0483 fmt   FALSE 0.441 74.000 0.005 NA   NA
 5731103 5731104 UPA3_0484 UPA3_0485 def parE TRUE 0.973 7.000 0.012 1.000 N NA
 5731104 5731105 UPA3_0485 UPA3_0486 parE parC TRUE 0.992 6.000 0.552 0.007 Y NA
 5731105 5731106 UPA3_0486 UPA3_0487 parC   TRUE 0.900 0.000 0.031 1.000   NA
 5731106 5731107 UPA3_0487 UPA3_0488     TRUE 0.928 27.000 0.010 1.000   NA
 5731107 5731108 UPA3_0488 UPA3_0489   mtnN TRUE 0.973 10.000 0.010 1.000 N NA
 5731108 5731109 UPA3_0489 UPA3_0490 mtnN   FALSE 0.408 107.000 0.006 1.000   NA
 5731109 5731110 UPA3_0490 UPA3_0491     FALSE 0.075 290.000 0.000 NA   NA
 5731110 5731111 UPA3_0491 UPA3_0492     TRUE 0.927 47.000 1.000 NA   NA
 5731112 5731113 UPA3_0493 UPA3_0494     TRUE 0.535 156.000 0.286 NA   NA
 5731113 5731114 UPA3_0494 UPA3_0495     TRUE 0.930 6.000 0.000 0.072 Y NA
 5731114 5731115 UPA3_0495 UPA3_0496     FALSE 0.154 155.000 0.000 0.072   NA
 5731115 5731116 UPA3_0496 UPA3_0497     FALSE 0.061 154.000 0.000 NA   NA
 5731118 5731119 UPA3_0499 UPA3_0500     FALSE 0.073 280.000 0.000 NA   NA
 5731119 5731120 UPA3_0500 UPA3_0501     FALSE 0.069 227.000 0.000 NA   NA
 5731122 5731123 UPA3_0503 UPA3_0504     FALSE 0.064 185.000 0.000 NA   NA
 5731123 5731124 UPA3_0504 UPA3_0505     FALSE 0.061 152.000 0.000 NA   NA
 5731124 5731125 UPA3_0505 UPA3_0506   apt FALSE 0.068 214.000 0.000 NA   NA
 5731125 5731126 UPA3_0506 UPA3_0507 apt   TRUE 0.882 21.000 0.002 NA   NA
 5731127 5731128 UPA3_0508 UPA3_0509   era TRUE 0.841 -7.000 0.026 NA   NA
 5731128 5731129 UPA3_0509 UPA3_0510 era recO TRUE 0.920 0.000 0.108 1.000   NA
 5731129 5731130 UPA3_0510 UPA3_0511 recO glyS TRUE 0.958 34.000 0.034 1.000 N NA
 5731130 5731131 UPA3_0511 UPA3_0512 glyS   TRUE 0.642 -12.000 0.000 1.000 N NA
 5731136 5731137 UPA3_0518 UPA3_0519     FALSE 0.105 79.000 0.000 NA   NA
 5731137 5731138 UPA3_0519 UPA3_0520     FALSE 0.240 56.000 0.000 NA   NA
 5731138 5731139 UPA3_0520 UPA3_0521     FALSE 0.139 67.000 0.000 NA   NA
 5731139 5731140 UPA3_0521 UPA3_0522     FALSE 0.408 1.000 0.000 NA   NA
 5731140 5731141 UPA3_0522 UPA3_0523     TRUE 0.480 3.000 0.000 NA   NA
 5731141 5731142 UPA3_0523 UPA3_0524     FALSE 0.322 46.000 0.000 NA   NA
 5731142 5731143 UPA3_0524 UPA3_0525     TRUE 0.480 3.000 0.000 NA   NA
 5731143 5731144 UPA3_0525 UPA3_0526     FALSE 0.065 121.000 0.000 NA   NA
 5731144 5731145 UPA3_0526 UPA3_0527     TRUE 0.890 4.000 0.007 NA   NA
 5731145 5731146 UPA3_0527 UPA3_0528     TRUE 0.937 25.000 0.022 NA   NA
 5731146 5731147 UPA3_0528 UPA3_0529     TRUE 0.915 1.000 0.200 NA   NA
 5731147 5731148 UPA3_0529 UPA3_0530     FALSE 0.087 86.000 0.000 NA   NA
 5731148 5731149 UPA3_0530 UPA3_0531     FALSE 0.122 75.000 0.000 NA   NA
 5731150 5731151 UPA3_0532 UPA3_0533     TRUE 0.925 -10.000 1.000 NA   NA
 5731151 5731152 UPA3_0533 UPA3_0534     TRUE 0.980 23.000 1.000 NA   NA
 5731152 5731153 UPA3_0534 UPA3_0535   acpP TRUE 0.945 17.000 0.013 NA   NA
 5731153 5731154 UPA3_0535 UPA3_0536 acpP   FALSE 0.163 63.000 0.000 NA   NA
 5731155 5731156 UPA3_0537 UPA3_0538     TRUE 0.714 113.000 0.182 1.000 N NA
 5731156 5731157 UPA3_0538 UPA3_0539     TRUE 0.959 17.000 0.039 NA   NA
 5731158 5731159 UPA3_0540 UPA3_0542     TRUE 0.950 5.000 0.077 NA   NA
 5731160 5731161 UPA3_0541 UPA3_0543 cdsA frr TRUE 0.979 11.000 0.020 1.000 N NA
 5731161 5731162 UPA3_0543 UPA3_0544 frr pyrH TRUE 0.990 18.000 0.626 1.000 N NA
 5731162 5731163 UPA3_0544 UPA3_0545 pyrH tsf TRUE 0.811 84.000 0.416 1.000 N NA
 5731163 5731164 UPA3_0545 UPA3_0546 tsf   FALSE 0.061 148.000 0.000 NA   NA
 5731164 5731165 UPA3_0546 UPA3_0547     TRUE 0.548 4.000 0.000 NA   NA
 5731165 5731166 UPA3_0547 UPA3_0549     FALSE 0.130 71.000 0.000 NA   NA
 5731166 5731167 UPA3_0549 UPA3_0550     FALSE 0.064 124.000 0.000 NA   NA
 10756178 5731168 UPA3_t03 UPA3_0552     FALSE 0.065 194.000 0.000 NA   NA
 5731168 5731169 UPA3_0552 UPA3_0553     TRUE 0.961 2.000 0.012 0.029 Y NA
 5731169 5731170 UPA3_0553 UPA3_0554     TRUE 0.542 40.000 0.000 1.000   NA
 5731170 5731171 UPA3_0554 UPA3_0555     FALSE 0.128 72.000 0.000 NA   NA
 5731172 5731173 UPA3_0556 UPA3_0557     TRUE 0.723 89.000 1.000 NA   NA
 5731173 5731174 UPA3_0557 UPA3_0558   pepF2 TRUE 0.848 63.000 1.000 NA   NA
 5731174 5731175 UPA3_0558 UPA3_0559 pepF2 tuf FALSE 0.444 95.000 0.002 1.000 N NA
 5731175 5731176 UPA3_0559 UPA3_0560 tuf fusA TRUE 0.823 137.000 0.400 0.003 Y NA
 5731176 5731177 UPA3_0560 UPA3_0561 fusA rpsG TRUE 0.987 27.000 0.579 1.000 Y NA
 5731177 5731178 UPA3_0561 UPA3_0562 rpsG rpsL TRUE 0.985 28.000 0.224 0.013 Y NA
 5731178 5731179 UPA3_0562 UPA3_0563 rpsL   FALSE 0.403 186.000 0.008 1.000   NA
 5731179 5731180 UPA3_0563 UPA3_0564     FALSE 0.067 211.000 0.000 NA   NA
 5731180 5731181 UPA3_0564 UPA3_0565     TRUE 0.548 4.000 0.000 NA   NA
 5731183 5731184 UPA3_0567 UPA3_0568   cdd TRUE 0.954 35.000 0.032 1.000 N NA
 5731184 5731185 UPA3_0568 UPA3_0569 cdd   FALSE 0.063 125.000 0.000 NA   NA
 5731185 5731186 UPA3_0569 UPA3_0570     TRUE 0.669 11.000 0.000 NA   NA
 5731186 5731187 UPA3_0570 UPA3_0571   rpmG TRUE 0.977 11.000 0.014 1.000 N NA
 5731187 5731188 UPA3_0571 UPA3_0572 rpmG thrS TRUE 0.774 61.000 0.002 1.000 Y NA
 5731190 5731191 UPA3_0573 UPA3_0575 truA   TRUE 0.801 62.000 0.076 1.000   NA
 5731191 5731192 UPA3_0575 UPA3_0576     TRUE 0.925 1.000 0.065 1.000   NA
 5731192 5731193 UPA3_0576 UPA3_0577     TRUE 0.888 -12.000 0.007 0.016 N NA
 5731193 5731194 UPA3_0577 UPA3_0578   rplA FALSE 0.345 140.000 0.002 1.000 N NA
 5731194 5731195 UPA3_0578 UPA3_0579 rplA rplK TRUE 0.987 3.000 0.838 0.080 Y NA
 5731197 5731198 UPA3_0581 UPA3_0582     TRUE 0.985 3.000 0.492 0.003 Y NA
 5731198 5731199 UPA3_0582 UPA3_0583     TRUE 0.904 -10.000 0.643 NA   NA
 5731199 5731200 UPA3_0583 UPA3_0584     TRUE 0.649 21.000 0.000 NA   NA
 5731200 5731201 UPA3_0584 UPA3_0585   ung TRUE 0.548 27.000 0.000 NA   NA
 5731201 5731202 UPA3_0585 UPA3_0586 ung   TRUE 0.908 -21.000 1.000 NA   NA
 5731202 5731203 UPA3_0586 UPA3_0587     TRUE 0.480 3.000 0.000 NA   NA
 5731203 5731204 UPA3_0587 UPA3_0588   rplI TRUE 0.882 6.000 0.000 1.000 N NA
 5731204 5731205 UPA3_0588 UPA3_0589 rplI rpsR TRUE 0.876 84.000 0.499 0.057 Y NA
 5731205 5731206 UPA3_0589 UPA3_0590 rpsR ssb TRUE 0.947 9.000 0.002 1.000 N NA
 5731206 5731207 UPA3_0590 UPA3_0591 ssb   TRUE 0.810 45.000 0.002 1.000 N NA
 5731209 5731210 UPA3_0647 UPA3_0594     FALSE 0.076 329.000 0.000 NA   NA
 5731210 5731211 UPA3_0594 UPA3_0595     TRUE 0.968 9.000 0.200 NA   NA
 5731211 5731212 UPA3_0595 UPA3_0596     TRUE 0.663 19.000 0.000 NA   NA
 5731212 5731213 UPA3_0596 UPA3_0597     TRUE 0.663 19.000 0.000 NA   NA
 5731213 5731214 UPA3_0597 UPA3_0598     TRUE 0.992 21.000 0.769 0.003 N NA
 5731214 5731215 UPA3_0598 UPA3_0599     TRUE 0.988 4.000 0.692 1.000 Y NA
 5731215 5731216 UPA3_0599 UPA3_0600     TRUE 0.993 5.000 1.000 0.028 Y NA
 5731216 5731217 UPA3_0600 UPA3_0601     TRUE 0.970 15.000 0.182 NA   NA
 5731217 5731218 UPA3_0601 UPA3_0602     TRUE 0.701 305.000 1.000 NA   NA
 5731218 5731219 UPA3_0602 UPA3_0603     TRUE 0.848 63.000 1.000 NA   NA
 5731219 5731220 UPA3_0603 UPA3_0604     FALSE 0.065 188.000 0.000 NA   NA
 5731220 5731221 UPA3_0604 UPA3_0605   rplS FALSE 0.231 135.000 0.003 NA   NA
 5731221 5731222 UPA3_0605 UPA3_0606 rplS trmD TRUE 0.992 10.000 0.567 1.000 Y NA
 5731222 5731223 UPA3_0606 UPA3_0607 trmD rpsP TRUE 0.987 13.000 0.033 1.000 Y NA
 5731223 5731224 UPA3_0607 UPA3_0608 rpsP   FALSE 0.277 96.000 0.002 1.000   NA
 5731224 5731225 UPA3_0608 UPA3_0609     TRUE 0.940 31.000 0.015 0.011   NA
 5731225 5731226 UPA3_0609 UPA3_0610     FALSE 0.135 240.000 0.000 1.000   NA
 5731227 5731228 UPA3_0611 UPA3_0612     FALSE 0.149 65.000 0.000 NA   NA
 5731229 5731230 UPA3_0613 UPA3_0614     TRUE 0.934 6.000 0.013 NA   NA
 5731230 5731231 UPA3_0614 UPA3_0615   rpsI FALSE 0.412 70.000 0.003 NA   NA
 5731231 5731232 UPA3_0615 UPA3_0616 rpsI rplM TRUE 0.993 20.000 0.601 0.056 Y NA
 5731233 5731234 UPA3_0617 UPA3_0618     FALSE 0.066 195.000 0.000 NA   NA
 5731234 5731235 UPA3_0618 UPA3_0619     TRUE 0.715 197.000 0.200 1.000 N NA
 5731235 5731236 UPA3_0619 UPA3_0620     TRUE 0.931 26.000 0.002 1.000 N NA
 5731237 5731238 UPA3_0621 UPA3_0622     TRUE 0.940 1.000 0.018 1.000 N NA
 5731238 5731239 UPA3_0622 UPA3_0623     FALSE 0.442 474.000 0.000 0.003 Y NA
 5731239 5731240 UPA3_0623 UPA3_0624   deoC TRUE 0.526 149.000 0.009 1.000 N NA
 5731240 5731241 UPA3_0624 UPA3_0625 deoC tkt TRUE 0.972 12.000 0.009 1.000 N NA
 5731241 5731242 UPA3_0625 UPA3_0626 tkt   TRUE 0.976 30.000 0.080 1.000 Y NA
 5731242 5731243 UPA3_0626 UPA3_0627     TRUE 0.708 100.000 0.080 1.000 N NA
 5731243 5731244 UPA3_0627 UPA3_0628     FALSE 0.108 78.000 0.000 NA   NA
 5731244 5731245 UPA3_0628 UPA3_0629     FALSE 0.084 89.000 0.000 NA   NA
 5731245 5731246 UPA3_0629 UPA3_0630   topA TRUE 0.918 29.000 0.002 1.000 N NA
 5731246 5731247 UPA3_0630 UPA3_0631 topA   TRUE 0.669 63.000 0.002 NA Y NA
 5731247 5731248 UPA3_0631 UPA3_0632     TRUE 0.712 51.000 0.007 NA   NA
 5731248 5731249 UPA3_0632 UPA3_0633     TRUE 0.919 12.000 0.005 NA   NA
 5731249 5731250 UPA3_0633 UPA3_0634   tdk TRUE 0.781 37.000 0.004 NA   NA
 5731250 5731251 UPA3_0634 UPA3_0635 tdk ychF TRUE 0.966 7.000 0.007 1.000 N NA
 5731251 5731252 UPA3_0635 UPA3_0636 ychF fba TRUE 0.969 11.000 0.006 1.000 N NA
 5731252 5731253 UPA3_0636 UPA3_0637 fba rpoE TRUE 0.977 5.000 0.060 1.000 N NA
 5731253 5731254 UPA3_0637 UPA3_0638 rpoE   TRUE 0.801 48.000 0.007 1.000   NA
 5731254 5731255 UPA3_0638 UPA3_0639   gltX TRUE 0.967 9.000 0.028 1.000   NA
 5731255 5731256 UPA3_0639 UPA3_0640 gltX   TRUE 0.851 -10.000 0.004 1.000 N NA
 5731256 5731257 UPA3_0640 UPA3_0641   ksgA TRUE 0.962 34.000 0.068 1.000 N NA
 5731257 5731258 UPA3_0641 UPA3_0642 ksgA   TRUE 0.919 2.000 0.005 1.000 N NA
 5731258 5731259 UPA3_0642 UPA3_0643   rnpA TRUE 0.936 39.000 0.021 1.000 N NA
 5731259 5731260 UPA3_0643 UPA3_0644 rnpA rpmH TRUE 0.982 6.000 0.787 1.000   NA