For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.
Also see:
Column | Description |
Gene1 | VIMSS id of 1st gene in pair |
SysName1 | Systematic name of 1st gene in pair |
Name1 | Ordinary name of 1st gene in pair |
Gene2 | VIMSS id of 2nd gene in pair |
SysName2 | Systematic name of 2nd gene in pair |
Name2 | Ordinary name of 2nd gene in pair |
bOp | Whether the pair is predicted to lie in the same operon or not |
pOp | Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions. |
Sep | Distance between the two genes, in base pairs |
MOGScore | Conservation, ranging from 0 (not conserved) to 1 (100% conserved) |
GOScore | Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized |
COGSim | Whether the genes share a COG category or not |
ExprSim | Correlation of expression patterns (not available for most genomes) |
Gene1 | Gene2 | SysName1 | SysName2 | Name1 | Name2 | bOp | pOp | Sep | MOGScore | GOScore | COGSim | ExprSim |
6024439 | 6024440 | CJBH_L02 | CJBH_L03 | waaC | waaM | FALSE | 0.511 | -10.000 | 0.231 | 1.000 | NA | |
6024440 | 6024441 | CJBH_L03 | CJBH_L04 | waaM | rlmA | FALSE | 0.375 | -3.000 | 0.050 | NA | Y | NA |
6024441 | 6024442 | CJBH_L04 | CJBH_L05 | rlmA | FALSE | 0.375 | -34.000 | 0.007 | NA | Y | NA | |
6024442 | 6024443 | CJBH_L05 | CJBH_L06 | rlmB | FALSE | 0.375 | 0.000 | 0.040 | 0.091 | Y | NA | |
6024443 | 6024444 | CJBH_L06 | CJBH_L07 | rlmB | FALSE | 0.511 | 3.000 | 0.286 | NA | NA | ||
6024444 | 6024445 | CJBH_L07 | CJBH_L08 | FALSE | 0.511 | 22.000 | 0.097 | NA | NA | |||
6024445 | 6024446 | CJBH_L08 | CJBH_L09 | FALSE | 0.511 | -10.000 | 0.000 | NA | NA | |||
6024446 | 6024447 | CJBH_L09 | CJBH_L10 | FALSE | 0.511 | -9.000 | 0.000 | NA | NA | |||
6024447 | 6024448 | CJBH_L10 | CJBH_L11 | FALSE | 0.511 | 297.000 | 0.000 | NA | NA | |||
6024448 | 6024449 | CJBH_L11 | CJBH_L12 | FALSE | 0.375 | 190.000 | 0.000 | NA | Y | NA | ||
6024450 | 6024451 | CJBH_L13c | CJBH_L14c | FALSE | 0.511 | -3.000 | 0.667 | NA | NA | |||
6024452 | 6024453 | CJBH_L15 | CJBH_L16 | FALSE | 0.511 | 7.000 | 0.200 | NA | NA | |||
6024453 | 6024454 | CJBH_L16 | CJBH_L17 | FALSE | 0.511 | -3.000 | 0.200 | NA | NA | |||
6024457 | 6024458 | CJBH_2273 | CJBH_2278 | FALSE | 0.511 | 2059.000 | 0.000 | NA | NA | |||
6024459 | 6024460 | CJBH_2280 | CJBH_2282 | FALSE | 0.511 | -18.000 | 0.000 | NA | NA | |||
6024460 | 6024461 | CJBH_2282 | CJBH_2288 | FALSE | 0.511 | 4235.000 | 0.000 | NA | NA | |||
6024462 | 6024463 | CJBH_0333 | CJBH_0334 | FALSE | 0.511 | 14.000 | 0.000 | NA | NA | |||
6024463 | 6024464 | CJBH_0334 | CJBH_0335 | FALSE | 0.511 | 526.000 | 0.000 | NA | NA | |||
6024464 | 6024465 | CJBH_0335 | CJBH_0336 | FALSE | 0.511 | -12.000 | 0.000 | NA | NA | |||
6024465 | 6024466 | CJBH_0336 | CJBH_0337 | FALSE | 0.511 | 87.000 | 0.000 | NA | NA | |||
6024466 | 6024467 | CJBH_0337 | CJBH_0340 | FALSE | 0.511 | 1537.000 | 0.000 | NA | NA | |||
6024469 | 6024470 | CJBH_0974 | CJBH_0976 | FALSE | 0.511 | 2.000 | 0.821 | NA | NA | |||
6024470 | 6024471 | CJBH_0976 | CJBH_0977 | FALSE | 0.511 | 3.000 | 0.627 | NA | NA | |||
6024473 | 6024474 | CJBH_0468 | CJBH_0469 | FALSE | 0.511 | 1.000 | 0.000 | NA | NA | |||
6024474 | 6024475 | CJBH_0469 | CJBH_0470 | FALSE | 0.511 | 127.000 | 0.000 | NA | NA | |||
6024475 | 6024476 | CJBH_0470 | CJBH_0471 | FALSE | 0.511 | -12.000 | 0.000 | NA | NA | |||
6024476 | 6024477 | CJBH_0471 | CJBH_0474 | FALSE | 0.511 | 1598.000 | 0.000 | NA | NA | |||
6024477 | 6024478 | CJBH_0474 | CJBH_0475 | FALSE | 0.511 | 142.000 | 0.000 | NA | NA | |||
6024482 | 6024483 | CJBH_1335 | CJBH_1337 | FALSE | 0.511 | 223.000 | 0.178 | NA | NA | |||
6024483 | 6024484 | CJBH_1337 | CJBH_1338 | FALSE | 0.511 | 1760.000 | 0.000 | NA | NA | |||
6024484 | 6024485 | CJBH_1338 | CJBH_1340 | FALSE | 0.511 | 787.000 | 0.000 | NA | NA | |||
6024486 | 6024487 | CJBH_0874 | CJBH_0875 | FALSE | 0.511 | -7.000 | 0.000 | NA | NA | |||
6024487 | 6024488 | CJBH_0875 | CJBH_0877 | FALSE | 0.511 | 0.000 | 0.000 | NA | NA | |||
6024488 | 6024489 | CJBH_0877 | CJBH_0878 | FALSE | 0.511 | 14.000 | 0.000 | NA | NA | |||
6024491 | 6024492 | CJBH_1131 | CJBH_1133 | FALSE | 0.511 | 433.000 | 0.000 | NA | NA | |||
6024493 | 6024494 | CJBH_1035 | CJBH_1036 | FALSE | 0.511 | 23.000 | 0.000 | NA | NA | |||
6024495 | 6024496 | CJBH_1158 | CJBH_1161 | FALSE | 0.511 | 3.000 | 0.000 | NA | NA | |||
6024497 | 6024498 | CJBH_0673 | CJBH_0674 | FALSE | 0.511 | 46.000 | 0.000 | NA | NA | |||
6024498 | 6024499 | CJBH_0674 | CJBH_0675 | FALSE | 0.511 | -3.000 | 0.000 | NA | NA | |||
6024500 | 6024501 | CJBH_0503 | CJBH_0504 | FALSE | 0.511 | 23.000 | 0.000 | NA | NA | |||
6024502 | 6024503 | CJBH_0852 | CJBH_0853 | FALSE | 0.511 | -10.000 | 0.000 | NA | NA | |||
6024503 | 6024504 | CJBH_0853 | CJBH_0854 | FALSE | 0.511 | 15.000 | 0.000 | NA | NA | |||
6024505 | 6024506 | CJBH_0142 | CJBH_0143 | FALSE | 0.511 | 51.000 | 0.000 | NA | NA | |||
6024507 | 6024508 | CJBH_0415 | CJBH_0416 | FALSE | 0.511 | 304.000 | 0.000 | NA | NA | |||
6024510 | 6024511 | CJBH_0643 | CJBH_0644 | FALSE | 0.511 | -61.000 | 0.000 | NA | NA | |||
6024513 | 6024514 | CJBH_1425 | CJBH_1427 | FALSE | 0.511 | 167.000 | 0.000 | NA | NA | |||
6024515 | 6024516 | CJBH_0930 | CJBH_0931 | FALSE | 0.511 | 9.000 | 0.000 | NA | NA | |||
6024516 | 6024517 | CJBH_0931 | CJBH_0933 | FALSE | 0.511 | -21.000 | 0.000 | NA | NA | |||
6024521 | 6024522 | CJBH_0140 | CJBH_0141 | FALSE | 0.511 | 0.000 | 0.000 | NA | NA | |||
6024525 | 6024526 | CJBH_1316 | CJBH_1317 | FALSE | 0.511 | -70.000 | 0.000 | NA | NA |