MicrobesOnline Operon Predictions for Campylobacter jejuni subsp. jejuni BH-01-0142

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

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Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 6024439 6024440 CJBH_L02 CJBH_L03 waaC waaM FALSE 0.511 -10.000 0.231 1.000   NA
 6024440 6024441 CJBH_L03 CJBH_L04 waaM rlmA FALSE 0.375 -3.000 0.050 NA Y NA
 6024441 6024442 CJBH_L04 CJBH_L05 rlmA   FALSE 0.375 -34.000 0.007 NA Y NA
 6024442 6024443 CJBH_L05 CJBH_L06   rlmB FALSE 0.375 0.000 0.040 0.091 Y NA
 6024443 6024444 CJBH_L06 CJBH_L07 rlmB   FALSE 0.511 3.000 0.286 NA   NA
 6024444 6024445 CJBH_L07 CJBH_L08     FALSE 0.511 22.000 0.097 NA   NA
 6024445 6024446 CJBH_L08 CJBH_L09     FALSE 0.511 -10.000 0.000 NA   NA
 6024446 6024447 CJBH_L09 CJBH_L10     FALSE 0.511 -9.000 0.000 NA   NA
 6024447 6024448 CJBH_L10 CJBH_L11     FALSE 0.511 297.000 0.000 NA   NA
 6024448 6024449 CJBH_L11 CJBH_L12     FALSE 0.375 190.000 0.000 NA Y NA
 6024450 6024451 CJBH_L13c CJBH_L14c     FALSE 0.511 -3.000 0.667 NA   NA
 6024452 6024453 CJBH_L15 CJBH_L16     FALSE 0.511 7.000 0.200 NA   NA
 6024453 6024454 CJBH_L16 CJBH_L17     FALSE 0.511 -3.000 0.200 NA   NA
 6024457 6024458 CJBH_2273 CJBH_2278     FALSE 0.511 2059.000 0.000 NA   NA
 6024459 6024460 CJBH_2280 CJBH_2282     FALSE 0.511 -18.000 0.000 NA   NA
 6024460 6024461 CJBH_2282 CJBH_2288     FALSE 0.511 4235.000 0.000 NA   NA
 6024462 6024463 CJBH_0333 CJBH_0334     FALSE 0.511 14.000 0.000 NA   NA
 6024463 6024464 CJBH_0334 CJBH_0335     FALSE 0.511 526.000 0.000 NA   NA
 6024464 6024465 CJBH_0335 CJBH_0336     FALSE 0.511 -12.000 0.000 NA   NA
 6024465 6024466 CJBH_0336 CJBH_0337     FALSE 0.511 87.000 0.000 NA   NA
 6024466 6024467 CJBH_0337 CJBH_0340     FALSE 0.511 1537.000 0.000 NA   NA
 6024469 6024470 CJBH_0974 CJBH_0976     FALSE 0.511 2.000 0.821 NA   NA
 6024470 6024471 CJBH_0976 CJBH_0977     FALSE 0.511 3.000 0.627 NA   NA
 6024473 6024474 CJBH_0468 CJBH_0469     FALSE 0.511 1.000 0.000 NA   NA
 6024474 6024475 CJBH_0469 CJBH_0470     FALSE 0.511 127.000 0.000 NA   NA
 6024475 6024476 CJBH_0470 CJBH_0471     FALSE 0.511 -12.000 0.000 NA   NA
 6024476 6024477 CJBH_0471 CJBH_0474     FALSE 0.511 1598.000 0.000 NA   NA
 6024477 6024478 CJBH_0474 CJBH_0475     FALSE 0.511 142.000 0.000 NA   NA
 6024482 6024483 CJBH_1335 CJBH_1337     FALSE 0.511 223.000 0.178 NA   NA
 6024483 6024484 CJBH_1337 CJBH_1338     FALSE 0.511 1760.000 0.000 NA   NA
 6024484 6024485 CJBH_1338 CJBH_1340     FALSE 0.511 787.000 0.000 NA   NA
 6024486 6024487 CJBH_0874 CJBH_0875     FALSE 0.511 -7.000 0.000 NA   NA
 6024487 6024488 CJBH_0875 CJBH_0877     FALSE 0.511 0.000 0.000 NA   NA
 6024488 6024489 CJBH_0877 CJBH_0878     FALSE 0.511 14.000 0.000 NA   NA
 6024491 6024492 CJBH_1131 CJBH_1133     FALSE 0.511 433.000 0.000 NA   NA
 6024493 6024494 CJBH_1035 CJBH_1036     FALSE 0.511 23.000 0.000 NA   NA
 6024495 6024496 CJBH_1158 CJBH_1161     FALSE 0.511 3.000 0.000 NA   NA
 6024497 6024498 CJBH_0673 CJBH_0674     FALSE 0.511 46.000 0.000 NA   NA
 6024498 6024499 CJBH_0674 CJBH_0675     FALSE 0.511 -3.000 0.000 NA   NA
 6024500 6024501 CJBH_0503 CJBH_0504     FALSE 0.511 23.000 0.000 NA   NA
 6024502 6024503 CJBH_0852 CJBH_0853     FALSE 0.511 -10.000 0.000 NA   NA
 6024503 6024504 CJBH_0853 CJBH_0854     FALSE 0.511 15.000 0.000 NA   NA
 6024505 6024506 CJBH_0142 CJBH_0143     FALSE 0.511 51.000 0.000 NA   NA
 6024507 6024508 CJBH_0415 CJBH_0416     FALSE 0.511 304.000 0.000 NA   NA
 6024510 6024511 CJBH_0643 CJBH_0644     FALSE 0.511 -61.000 0.000 NA   NA
 6024513 6024514 CJBH_1425 CJBH_1427     FALSE 0.511 167.000 0.000 NA   NA
 6024515 6024516 CJBH_0930 CJBH_0931     FALSE 0.511 9.000 0.000 NA   NA
 6024516 6024517 CJBH_0931 CJBH_0933     FALSE 0.511 -21.000 0.000 NA   NA
 6024521 6024522 CJBH_0140 CJBH_0141     FALSE 0.511 0.000 0.000 NA   NA
 6024525 6024526 CJBH_1316 CJBH_1317     FALSE 0.511 -70.000 0.000 NA   NA