MicrobesOnline Operon Predictions for Streptococcus pyogenes NZ131

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column	Description
Gene1	VIMSS id of 1st gene in pair
SysName1	Systematic name of 1st gene in pair
Name1	Ordinary name of 1st gene in pair
Gene2	VIMSS id of 2nd gene in pair
SysName2	Systematic name of 2nd gene in pair
Name2	Ordinary name of 2nd gene in pair
bOp	Whether the pair is predicted to lie in the same operon or not
pOp	Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep	Distance between the two genes, in base pairs
MOGScore	Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore	Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim	Whether the genes share a COG category or not
ExprSim	Correlation of expression patterns (not available for most genomes)

Gene1	Gene2	SysName1	SysName2	Name1	Name2	bOp	pOp	Sep	MOGScore	GOScore	COGSim	ExprSim
5671438	5671439	Spy49_0001	Spy49_0002	dnaA	dnaN	TRUE	0.657	155.000	0.328	1.000	Y	NA
5671439	5671440	Spy49_0002	Spy49_0003	dnaN		TRUE	0.476	75.000	0.009	NA		NA
5671440	5671441	Spy49_0003	Spy49_0004			FALSE	0.116	330.000	0.064	NA		NA
5671441	5671442	Spy49_0004	Spy49_0005		pth	TRUE	0.845	70.000	0.184	1.000	Y	NA
5671442	5671443	Spy49_0005	Spy49_0006	pth	trcF	TRUE	0.428	87.000	0.137	1.000	N	NA
5671443	5671444	Spy49_0006	Spy49_0008	trcF		FALSE	0.123	162.000	0.024	1.000	N	NA
5671444	5671445	Spy49_0008	Spy49_0009		divIC	TRUE	0.917	-13.000	0.053	1.000	N	NA
5671445	5671446	Spy49_0009	Spy49_0010	divIC		FALSE	0.121	135.000	0.011	1.000	N	NA
5671446	5671447	Spy49_0010	Spy49_0011		mesJ	TRUE	0.927	-3.000	0.014	1.000	N	NA
5671447	5671448	Spy49_0011	Spy49_0012	mesJ	hpt	TRUE	0.982	5.000	0.067	0.068	N	NA
5671448	5671449	Spy49_0012	Spy49_0013	hpt	ftsH	TRUE	0.862	22.000	0.192	1.000	N	NA
5671449	5671450	Spy49_0013	Spy49_0014	ftsH		FALSE	0.059	257.000	0.009	1.000	N	NA
5671450	5671451	Spy49_0014	Spy49_rRNA16s1			FALSE	0.036	570.000	0.000	NA		NA
5671451	5671452	Spy49_rRNA16s1	Spy49_tRNAala1			FALSE	0.116	162.000	0.000	NA		NA
5671452	5671453	Spy49_tRNAala1	Spy49_rRNA23s1			FALSE	0.058	300.000	0.000	NA		NA
5671453	5671454	Spy49_rRNA23s1	Spy49_rRNA5s1			TRUE	0.297	85.000	0.000	NA		NA
5671454	5671455	Spy49_rRNA5s1	Spy49_tRNAval1			TRUE	0.756	18.000	0.000	NA		NA
5671455	5671456	Spy49_tRNAval1	Spy49_tRNAasp1			TRUE	0.756	18.000	0.000	NA		NA
5671456	5671457	Spy49_tRNAasp1	Spy49_tRNAlys1			TRUE	0.638	32.000	0.000	NA		NA
5671457	5671458	Spy49_tRNAlys1	Spy49_tRNAleu1			TRUE	0.890	6.000	0.000	NA		NA
5671458	5671459	Spy49_tRNAleu1	Spy49_tRNAthr1			TRUE	0.845	11.000	0.000	NA		NA
5671459	5671460	Spy49_tRNAthr1	Spy49_tRNAgly1			TRUE	0.817	13.000	0.000	NA		NA
5671460	5671461	Spy49_tRNAgly1	Spy49_tRNAleu2			TRUE	0.879	9.000	0.000	NA		NA
5671461	5671462	Spy49_tRNAleu2	Spy49_tRNAarg1			TRUE	0.768	17.000	0.000	NA		NA
5671462	5671463	Spy49_tRNAarg1	Spy49_tRNApro1			TRUE	0.886	7.000	0.000	NA		NA
5671463	5671464	Spy49_tRNApro1	Spy49_rRNA16s2			FALSE	0.140	132.000	0.000	NA		NA
5671464	5671465	Spy49_rRNA16s2	Spy49_tRNAala2			FALSE	0.116	162.000	0.000	NA		NA
5671465	5671466	Spy49_tRNAala2	Spy49_rRNA23s2			FALSE	0.059	299.000	0.000	NA		NA
5671466	5671467	Spy49_rRNA23s2	Spy49_rRNA5s2			TRUE	0.297	85.000	0.000	NA		NA
5671467	5671468	Spy49_rRNA5s2	Spy49_tRNAval2			TRUE	0.756	18.000	0.000	NA		NA
5671468	5671469	Spy49_tRNAval2	Spy49_tRNAasp2			TRUE	0.756	18.000	0.000	NA		NA
5671469	5671470	Spy49_tRNAasp2	Spy49_tRNAlys2			TRUE	0.638	32.000	0.000	NA		NA
5671470	5671471	Spy49_tRNAlys2	Spy49_tRNAleu3			TRUE	0.890	6.000	0.000	NA		NA
5671471	5671472	Spy49_tRNAleu3	Spy49_tRNAthr2			TRUE	0.845	11.000	0.000	NA		NA
5671472	5671473	Spy49_tRNAthr2	Spy49_tRNAgly2			TRUE	0.817	13.000	0.000	NA		NA
5671473	5671474	Spy49_tRNAgly2	Spy49_tRNAleu4			TRUE	0.879	9.000	0.000	NA		NA
5671474	5671475	Spy49_tRNAleu4	Spy49_tRNAarg2			TRUE	0.768	17.000	0.000	NA		NA
5671475	5671476	Spy49_tRNAarg2	Spy49_tRNApro2			TRUE	0.886	7.000	0.000	NA		NA
5671476	5671477	Spy49_tRNApro2	Spy49_tRNAmet1			TRUE	0.890	6.000	0.000	NA		NA
5671477	5671478	Spy49_tRNAmet1	Spy49_tRNAmet2			TRUE	0.717	21.000	0.000	NA		NA
5671478	5671479	Spy49_tRNAmet2	Spy49_tRNApseudo1			TRUE	0.699	23.000	0.000	NA		NA
5671479	5671480	Spy49_tRNApseudo1	Spy49_tRNApseudo1			TRUE	0.857	-89.000	0.000	NA		NA
5671480	5671481	Spy49_tRNApseudo1	Spy49_tRNAmet3			TRUE	0.863	10.000	0.000	NA		NA
5671481	5671482	Spy49_tRNAmet3	Spy49_tRNAphe1			TRUE	0.717	21.000	0.000	NA		NA
5671482	5671483	Spy49_tRNAphe1	Spy49_tRNAgly3			TRUE	0.817	13.000	0.000	NA		NA
5671483	5671484	Spy49_tRNAgly3	Spy49_tRNAile1			TRUE	0.613	35.000	0.000	NA		NA
5671484	5671485	Spy49_tRNAile1	Spy49_tRNApseudo2			TRUE	0.863	10.000	0.000	NA		NA
5671485	5671486	Spy49_tRNApseudo2	Spy49_tRNApseudo2			TRUE	0.859	-87.000	0.000	NA		NA
5671486	5671487	Spy49_tRNApseudo2	Spy49_0015			FALSE	0.029	1477.000	0.000	NA		NA
5671487	5671488	Spy49_0015	Spy49_0016		prsA	FALSE	0.176	253.000	0.107	NA		NA
5671488	5671489	Spy49_0016	Spy49_0017	prsA	recO	FALSE	0.039	186.000	0.000	1.000	N	NA
5671489	5671490	Spy49_0017	Spy49_0018	recO		FALSE	0.194	103.000	0.011	1.000	N	NA
5671490	5671491	Spy49_0018	Spy49_0019		acp	TRUE	0.997	-7.000	0.017	0.010	Y	NA
5671491	5671492	Spy49_0019	Spy49_0020	acp	purC	FALSE	0.166	121.000	0.017	1.000	N	NA
5671492	5671493	Spy49_0020	Spy49_0021	purC	purL	TRUE	0.721	77.000	0.043	1.000	Y	NA
5671493	5671494	Spy49_0021	Spy49_0022	purL	purF	TRUE	0.287	234.000	0.024	1.000	Y	NA
5671494	5671495	Spy49_0022	Spy49_0023	purF	purM	TRUE	0.955	28.000	0.248	1.000	Y	NA
5671495	5671496	Spy49_0023	Spy49_0024	purM	purN	TRUE	0.906	168.000	0.238	0.003	Y	NA
5671496	5671497	Spy49_0024	Spy49_0025	purN	purH	TRUE	0.536	184.000	0.225	1.000	Y	NA
5671499	5671500	Spy49_0027	Spy49_0028	purD	purE	TRUE	0.402	159.000	0.044	1.000	Y	NA
5671500	5671501	Spy49_0028	Spy49_0029	purE	purK	TRUE	0.996	-16.000	0.002	0.002	Y	NA
5671501	5671502	Spy49_0029	Spy49_0030	purK		FALSE	0.216	102.000	0.000	NA		NA
5671502	5671503	Spy49_0030	Spy49_0031		purB	FALSE	0.110	173.000	0.000	NA		NA
5671503	5671504	Spy49_0031	Spy49_0032	purB		FALSE	0.158	131.000	0.005	1.000		NA
5671504	5671505	Spy49_0032	Spy49_0033		ruvB	FALSE	0.084	226.000	0.002	1.000		NA
5671505	5671506	Spy49_0033	Spy49_0035	ruvB		FALSE	0.104	138.000	0.005	1.000	N	NA
5671506	5671507	Spy49_0035	Spy49_0036			TRUE	0.819	23.000	0.019	NA		NA
5671507	5671508	Spy49_0036	Spy49_0037			TRUE	0.990	-3.000	0.351	NA		NA
5671508	5671509	Spy49_0037	Spy49_0038		adhE	FALSE	0.022	309.000	0.000	1.000	N	NA
5671509	5671510	Spy49_0038	Spy49_0039	adhE	adhP	TRUE	0.558	252.000	0.012	0.002		NA
5671510	5671511	Spy49_0039	Spy49_0040	adhP	norM	FALSE	0.031	388.000	0.000	1.000		NA
5671511	5671512	Spy49_0040	Spy49_0044	norM	rpsJ	FALSE	0.037	199.000	0.000	1.000	N	NA
5671512	5671513	Spy49_0044	Spy49_0045	rpsJ	rplC	TRUE	0.845	248.000	0.467	0.046	Y	NA
5671513	5671514	Spy49_0045	Spy49_0046	rplC	rplD	TRUE	0.995	24.000	0.544	0.035	Y	NA
5671514	5671515	Spy49_0046	Spy49_0048	rplD	rplW	TRUE	0.994	0.000	0.307	1.000	Y	NA
5671515	5671516	Spy49_0048	Spy49_0049	rplW	rplB	TRUE	0.951	85.000	0.849	1.000	Y	NA
5671516	5671517	Spy49_0049	Spy49_0050	rplB	rpsS	TRUE	0.957	139.000	0.820	0.046	Y	NA
5671517	5671518	Spy49_0050	Spy49_0052	rpsS	rplV	TRUE	0.998	16.000	0.769	0.046	Y	NA
5671518	5671519	Spy49_0052	Spy49_0053	rplV	rpsC	TRUE	0.994	40.000	0.719	0.046	Y	NA
5671519	5671520	Spy49_0053	Spy49_0054	rpsC	rplP	TRUE	0.999	4.000	0.828	0.046	Y	NA
5671520	5671521	Spy49_0054	Spy49_0055	rplP	rpmC	TRUE	0.999	10.000	0.802	0.035	Y	NA
5671521	5671522	Spy49_0055	Spy49_0056	rpmC	rpsQ	TRUE	0.997	26.000	0.828	0.035	Y	NA
5671522	5671523	Spy49_0056	Spy49_0057	rpsQ	rplN	TRUE	0.997	25.000	0.791	0.046	Y	NA
5671523	5671524	Spy49_0057	Spy49_0058	rplN	rplX	TRUE	0.986	79.000	0.810	0.046	Y	NA
5671524	5671525	Spy49_0058	Spy49_0059	rplX	rplE	TRUE	0.997	24.000	0.758	0.035	Y	NA
5671525	5671526	Spy49_0059	Spy49_0060	rplE	rpsN.1	TRUE	0.997	16.000	0.496	0.035	Y	NA
5671526	5671527	Spy49_0060	Spy49_0061	rpsN.1	rpsH	TRUE	0.916	151.000	0.473	0.035	Y	NA
5671527	5671528	Spy49_0061	Spy49_0062	rpsH	rplF	TRUE	0.941	203.000	0.808	0.035	Y	NA
5671528	5671529	Spy49_0062	Spy49_0064	rplF	rplR	TRUE	0.977	105.000	0.815	0.035	Y	NA
5671529	5671530	Spy49_0064	Spy49_0065	rplR	rpsE	TRUE	0.998	19.000	0.814	0.046	Y	NA
5671530	5671531	Spy49_0065	Spy49_0066	rpsE	rpmD	TRUE	0.998	15.000	0.789	0.046	Y	NA
5671531	5671532	Spy49_0066	Spy49_0067	rpmD	rplO	TRUE	0.945	215.000	0.653	0.006	Y	NA
5671532	5671533	Spy49_0067	Spy49_0068	rplO	secY	TRUE	0.976	17.000	0.730	1.000	N	NA
5671533	5671534	Spy49_0068	Spy49_0069	secY	adk	TRUE	0.320	150.000	0.241	1.000	N	NA
5671534	5671535	Spy49_0069	Spy49_0070	adk	infA	FALSE	0.205	118.000	0.059	1.000	N	NA
5671535	5671536	Spy49_0070	Spy49_0071	infA	rpmJ	TRUE	0.918	26.000	0.067	1.000	Y	NA
5671536	5671537	Spy49_0071	Spy49_0072	rpmJ	rpsM	TRUE	0.987	18.000	0.086	0.035	Y	NA
5671537	5671538	Spy49_0072	Spy49_0073	rpsM	rpsK	TRUE	0.998	18.000	0.810	0.035	Y	NA
5671538	5671539	Spy49_0073	Spy49_0074	rpsK	rpoA	TRUE	0.830	46.000	0.308	1.000	N	NA
5671539	5671540	Spy49_0074	Spy49_0075	rpoA	rplQ	TRUE	0.985	15.000	0.873	1.000	N	NA
5671540	5671541	Spy49_0075	Spy49_rRNA16s3	rplQ		FALSE	0.032	826.000	0.000	NA		NA
5671541	5671542	Spy49_rRNA16s3	Spy49_tRNAala3			FALSE	0.116	162.000	0.000	NA		NA
5671542	5671543	Spy49_tRNAala3	Spy49_rRNA23s3			FALSE	0.059	299.000	0.000	NA		NA
5671543	5671544	Spy49_rRNA23s3	Spy49_rRNA5s3			TRUE	0.297	85.000	0.000	NA		NA
5671544	5671545	Spy49_rRNA5s3	Spy49_tRNAval3			TRUE	0.756	18.000	0.000	NA		NA
5671545	5671546	Spy49_tRNAval3	Spy49_tRNAgly4			TRUE	0.890	6.000	0.000	NA		NA
5671546	5671547	Spy49_tRNAgly4	Spy49_tRNAile2			TRUE	0.613	35.000	0.000	NA		NA
5671547	5671548	Spy49_tRNAile2	Spy49_tRNAglu1			TRUE	0.699	23.000	0.000	NA		NA
5671548	5671549	Spy49_tRNAglu1	Spy49_tRNApseudo3			TRUE	0.845	11.000	0.000	NA		NA
5671549	5671550	Spy49_tRNApseudo3	Spy49_tRNApseudo3			TRUE	0.857	-89.000	0.000	NA		NA
5671550	5671551	Spy49_tRNApseudo3	Spy49_tRNAmet4			TRUE	0.863	10.000	0.000	NA		NA
5671551	5671552	Spy49_tRNAmet4	Spy49_tRNAphe2			TRUE	0.717	21.000	0.000	NA		NA
5671552	5671553	Spy49_tRNAphe2	Spy49_tRNAtyr1			TRUE	0.732	20.000	0.000	NA		NA
5671553	5671554	Spy49_tRNAtyr1	Spy49_tRNAtrp1			TRUE	0.886	7.000	0.000	NA		NA
5671554	5671555	Spy49_tRNAtrp1	Spy49_tRNAhis1			TRUE	0.831	12.000	0.000	NA		NA
5671555	5671556	Spy49_tRNAhis1	Spy49_tRNAgln1			TRUE	0.879	9.000	0.000	NA		NA
5671556	5671557	Spy49_tRNAgln1	Spy49_tRNAleu5			TRUE	0.732	20.000	0.000	NA		NA
5671557	5671558	Spy49_tRNAleu5	Spy49_0078			FALSE	0.030	1143.000	0.000	NA		NA
5671558	5671559	Spy49_0078	Spy49_0079			TRUE	0.936	55.000	0.009	0.002		NA
5671559	5671560	Spy49_0079	Spy49_0080		adrR	FALSE	0.227	110.000	0.008	1.000		NA
5671560	5671561	Spy49_0080	Spy49_0081	adrR	adrC	TRUE	0.960	4.000	0.192	1.000	N	NA
5671561	5671562	Spy49_0081	Spy49_0082	adrC	adrB	TRUE	0.997	-7.000	0.673	1.000	Y	NA
5671563	5671564	Spy49_0083c	Spy49_0084		tyrS	TRUE	0.421	51.000	0.004	1.000	N	NA
5671565	5671566	Spy49_0086	Spy49_0087	pbp1b	rpoB	FALSE	0.026	264.000	0.000	1.000	N	NA
5671566	5671567	Spy49_0087	Spy49_0088	rpoB	rpoC	TRUE	0.986	118.000	0.851	0.002	Y	NA
5671567	5671568	Spy49_0088	Spy49_0089	rpoC		FALSE	0.184	152.000	0.007	NA		NA
5671568	5671569	Spy49_0089	Spy49_0090		comYA	TRUE	0.459	93.000	0.083	NA		NA
5671569	5671570	Spy49_0090	Spy49_0091	comYA	comYB	TRUE	0.900	95.000	0.639	1.000	Y	NA
5671570	5671571	Spy49_0091	Spy49_0092	comYB	comYC	TRUE	1.000	2.000	0.861	0.002	Y	NA
5671571	5671572	Spy49_0092	Spy49_0093	comYC		TRUE	0.982	-25.000	0.110	NA	Y	NA
5671572	5671573	Spy49_0093	Spy49_0094			TRUE	0.992	-43.000	0.786	NA		NA
5671573	5671574	Spy49_0094	Spy49_0095		comYD	TRUE	0.985	-7.000	0.250	NA		NA
5671574	5671575	Spy49_0095	Spy49_0096	comYD		TRUE	0.932	20.000	0.232	NA		NA
5671575	5671576	Spy49_0096	Spy49_0097			TRUE	0.434	98.000	0.087	NA		NA
5671576	5671577	Spy49_0097	Spy49_0098		ackA	TRUE	0.607	59.000	0.130	1.000	N	NA
5671577	5671578	Spy49_0098	Spy49_0099	ackA		FALSE	0.099	186.000	0.000	NA		NA
5671579	5671580	Spy49_0100	Spy49_0101	proC	pepA	TRUE	0.549	48.000	0.041	1.000	N	NA
5671581	5671582	Spy49_0103	Spy49_0104		trx.1	TRUE	0.977	-3.000	0.140	NA		NA
5671582	5671583	Spy49_0104	Spy49_0105	trx.1		TRUE	0.929	18.000	0.239	1.000		NA
5671583	5671584	Spy49_0105	Spy49_0107		ssb	FALSE	0.202	134.000	0.034	1.000		NA
5671585	5671586	Spy49_0108c	Spy49_0109c			TRUE	0.676	20.000	0.005	1.000	N	NA
5671586	5671587	Spy49_0109c	Spy49_0110c			TRUE	0.912	-13.000	0.034	1.000	N	NA
5671587	5671588	Spy49_0110c	Spy49_0111		nra	FALSE	0.215	126.000	0.003	NA		NA
5671589	5671590	Spy49_0112	Spy49_0113	cbp	lepA-1	TRUE	0.964	-7.000	0.061	NA		NA
5671590	5671591	Spy49_0113	Spy49_0114	lepA-1		TRUE	0.844	22.000	0.061	NA		NA
5671591	5671592	Spy49_0114	Spy49_0116			TRUE	0.975	16.000	0.500	NA		NA
5671592	5671593	Spy49_0116	Spy49_0117			TRUE	0.979	35.000	1.000	NA		NA
5671599	5671600	Spy49_0123	Spy49_0124		atoD.2	TRUE	0.968	12.000	0.100	1.000	Y	NA
5671600	5671601	Spy49_0124	Spy49_0125	atoD.2		TRUE	0.997	3.000	0.200	0.054	Y	NA
5671603	5671604	Spy49_0127	Spy49_0128		sloR	TRUE	0.665	37.000	0.016	NA	N	NA
5671604	5671605	Spy49_0128	Spy49_0129	sloR		FALSE	0.040	454.000	0.000	NA		NA
5671605	5671606	Spy49_0129	Spy49_0130		ntpI	TRUE	0.912	-10.000	0.000	NA		NA
5671606	5671607	Spy49_0130	Spy49_0131	ntpI	ntpK	TRUE	0.999	2.000	0.848	0.013		NA
5671607	5671608	Spy49_0131	Spy49_0132	ntpK	ntpE	TRUE	0.890	68.000	0.045	0.013		NA
5671608	5671609	Spy49_0132	Spy49_0133	ntpE	ntpC	TRUE	0.981	16.000	0.097	0.013		NA
5671609	5671610	Spy49_0133	Spy49_0134	ntpC	ntpG	TRUE	0.999	-3.000	0.487	0.010	Y	NA
5671610	5671611	Spy49_0134	Spy49_0135	ntpG	ntpA	TRUE	0.917	201.000	0.462	0.010	Y	NA
5671611	5671612	Spy49_0135	Spy49_0136	ntpA	ntpB	TRUE	1.000	1.000	0.776	0.010	Y	NA
5671612	5671613	Spy49_0136	Spy49_0137	ntpB	ntpD	TRUE	0.986	45.000	0.238	0.010	Y	NA
5671614	5671615	Spy49_0138c	Spy49_0139c			TRUE	0.990	13.000	0.818	NA		NA
5671616	5671617	Spy49_0141	Spy49_0142	purA		FALSE	0.037	327.000	0.000	1.000		NA
5671617	5671618	Spy49_0142	Spy49_0143		nusG	FALSE	0.084	158.000	0.000	1.000		NA
5671618	5671619	Spy49_0143	Spy49_0144	nusG	nga	FALSE	0.032	375.000	0.000	1.000		NA
5671619	5671620	Spy49_0144	Spy49_0145	nga		TRUE	0.977	5.000	0.286	1.000		NA
5671620	5671621	Spy49_0145	Spy49_0146		slo	TRUE	0.841	24.000	0.125	1.000		NA
5671621	5671622	Spy49_0146	Spy49_0147	slo		FALSE	0.070	255.000	0.000	NA		NA
5671622	5671623	Spy49_0147	Spy49_0148			FALSE	0.081	224.000	0.000	NA		NA
5671624	5671625	Spy49_0149c	Spy49_0150c			FALSE	0.100	185.000	0.000	NA		NA
5671626	5671627	Spy49_0151	Spy49_0152	metB	leuS	FALSE	0.034	211.000	0.000	1.000	N	NA
5671627	5671628	Spy49_0152	Spy49_0153	leuS		FALSE	0.040	307.000	0.000	1.000		NA
5671628	5671629	Spy49_0153	Spy49_0154			TRUE	0.955	71.000	0.431	0.029		NA
5671629	5671630	Spy49_0154	Spy49_0155			TRUE	0.918	123.000	0.279	0.018	Y	NA
5671630	5671631	Spy49_0155	Spy49_0156			TRUE	0.834	91.000	0.328	1.000	Y	NA
5671631	5671632	Spy49_0156	Spy49_0157			TRUE	0.995	5.000	0.536	1.000	Y	NA
5671632	5671633	Spy49_0157	Spy49_0158		araD	TRUE	0.997	2.000	0.700	1.000	Y	NA
5671633	5671634	Spy49_0158	Spy49_0159	araD		FALSE	0.136	326.000	0.200	1.000	N	NA
5671634	5671635	Spy49_0159	Spy49_0160			FALSE	0.276	254.000	0.231	NA		NA
5671635	5671636	Spy49_0160	Spy49_0161		opuAA	FALSE	0.038	490.000	0.000	NA		NA
5671636	5671637	Spy49_0161	Spy49_0162	opuAA	opuABC	TRUE	0.990	16.000	0.177	0.085	Y	NA
5671637	5671638	Spy49_0162	Spy49_0163	opuABC	polA	FALSE	0.105	131.000	0.003	1.000	N	NA
5671638	5671639	Spy49_0163	Spy49_0164	polA		FALSE	0.153	178.000	0.005	NA		NA
5671639	5671640	Spy49_0164	Spy49_0165			TRUE	0.621	52.000	0.010	NA		NA
5671640	5671641	Spy49_0165	Spy49_0166			FALSE	0.120	156.000	0.000	NA		NA
5671641	5671642	Spy49_0166	Spy49_0167			FALSE	0.082	222.000	0.000	NA		NA
5671642	5671643	Spy49_0167	Spy49_0168			TRUE	0.891	-7.000	0.000	1.000		NA
5671643	5671644	Spy49_0168	Spy49_0169			FALSE	0.126	144.000	0.000	NA		NA
5671645	5671646	Spy49_0170c	Spy49_0173c			FALSE	0.136	642.000	0.000	0.071		NA
5671647	5671648	Spy49_1061c	Spy49_0176			FALSE	0.029	1694.000	0.000	NA		NA
5671649	5671650	Spy49_0178c	Spy49_0180c			FALSE	0.035	622.000	0.000	NA		NA
5671651	5671652	Spy49_0181	Spy49_0182	tgt		FALSE	0.093	217.000	0.004	1.000		NA
5671652	5671653	Spy49_0182	Spy49_0183		bioY	TRUE	0.951	4.000	0.039	NA		NA
5671653	5671654	Spy49_0183	Spy49_0184	bioY		FALSE	0.236	140.000	0.033	NA		NA
5671654	5671655	Spy49_0184	Spy49_0185			TRUE	0.992	0.000	0.013	0.020		NA
5671657	5671658	Spy49_0187	Spy49_0188	speG	pgi	FALSE	0.027	455.000	0.000	1.000		NA
5671661	5671662	Spy49_0191c	Spy49_0192c	hasC.2	gpdA	TRUE	0.578	33.000	0.007	1.000	N	NA
5671663	5671664	Spy49_0193	Spy49_0194			TRUE	0.968	-7.000	0.080	NA		NA
5671664	5671665	Spy49_0194	Spy49_0195			TRUE	0.999	3.000	0.720	0.009	Y	NA
5671665	5671666	Spy49_0195	Spy49_0198			FALSE	0.155	193.000	0.010	NA		NA
5671666	5671667	Spy49_0198	Spy49_0199		dut	FALSE	0.267	110.000	0.005	NA		NA
5671667	5671668	Spy49_0199	Spy49_0200	dut	radA	TRUE	0.616	37.000	0.028	1.000	N	NA
5671668	5671669	Spy49_0200	Spy49_0201	radA		FALSE	0.084	189.000	0.009	1.000	N	NA
5671669	5671670	Spy49_0201	Spy49_0202			TRUE	0.490	131.000	0.278	NA		NA
5671670	5671671	Spy49_0202	Spy49_0203		gluS	FALSE	0.158	183.000	0.008	NA		NA
5671671	5671672	Spy49_0203	Spy49_0204	gluS	fasB	FALSE	0.033	351.000	0.000	NA	N	NA
5671672	5671673	Spy49_0204	Spy49_0205	fasB		TRUE	0.998	-3.000	0.750	NA	Y	NA
5671673	5671674	Spy49_0205	Spy49_0206		fasA	TRUE	0.996	4.000	0.571	NA	Y	NA
5671674	5671675	Spy49_0206	Spy49_0207	fasA	rnpA	FALSE	0.014	540.000	0.000	1.000	N	NA
5671675	5671676	Spy49_0207	Spy49_0208	rnpA		TRUE	0.909	-16.000	0.052	1.000	N	NA
5671676	5671677	Spy49_0208	Spy49_0209			TRUE	0.915	12.000	0.106	1.000		NA
5671677	5671678	Spy49_0209	Spy49_0210		rpmH	FALSE	0.059	315.000	0.002	1.000		NA
5671678	5671679	Spy49_0210	Spy49_0211	rpmH		FALSE	0.046	274.000	0.000	1.000		NA
5671679	5671680	Spy49_0211	Spy49_0212			TRUE	0.958	49.000	0.500	1.000	Y	NA
5671680	5671681	Spy49_0212	Spy49_0213			TRUE	0.884	105.000	0.133	0.035	Y	NA
5671681	5671682	Spy49_0213	Spy49_0214			TRUE	0.999	13.000	1.000	0.035	Y	NA
5671682	5671683	Spy49_0214	Spy49_0215			FALSE	0.086	214.000	0.000	NA		NA
5671683	5671684	Spy49_0215	Spy49_0216		nanH	TRUE	0.982	12.000	0.500	NA		NA
5671684	5671685	Spy49_0216	Spy49_0217	nanH		TRUE	0.798	22.000	0.108	1.000	N	NA
5671687	5671688	Spy49_0219	Spy49_0220			TRUE	0.977	-28.000	0.058	NA	Y	NA
5671688	5671689	Spy49_0220	Spy49_0221		ksgA	FALSE	0.255	114.000	0.093	1.000	N	NA
5671689	5671690	Spy49_0221	Spy49_0223	ksgA	engC	FALSE	0.044	427.000	0.003	1.000		NA
5671690	5671691	Spy49_0223	Spy49_0224	engC	rpe	TRUE	0.960	10.000	0.213	1.000		NA
5671691	5671692	Spy49_0224	Spy49_0225	rpe		TRUE	0.964	-7.000	0.166	1.000	N	NA
5671692	5671693	Spy49_0225	Spy49_0226			TRUE	0.959	2.000	0.030	NA		NA
5671693	5671694	Spy49_0226	Spy49_0227		cbf	TRUE	0.955	-10.000	0.030	NA		NA
5671694	5671695	Spy49_0227	Spy49_0228	cbf	purR	FALSE	0.109	266.000	0.052	1.000		NA
5671695	5671696	Spy49_0228	Spy49_0229	purR	prgA	TRUE	0.955	-9.000	0.017	NA		NA
5671696	5671697	Spy49_0229	Spy49_0230	prgA	rpsL	FALSE	0.198	151.000	0.012	NA		NA
5671697	5671698	Spy49_0230	Spy49_0231	rpsL	rpsG	TRUE	0.994	21.000	0.224	0.006	Y	NA
5671698	5671699	Spy49_0231	Spy49_0233	rpsG	fusA	TRUE	0.571	367.000	0.579	1.000	Y	NA
5671699	5671700	Spy49_0233	Spy49_0234	fusA	plr	TRUE	0.337	348.000	0.000	0.002	N	NA
5671701	5671702	Spy49_0235c	Spy49_0236c			FALSE	0.232	142.000	0.032	NA		NA
5671702	5671703	Spy49_0236c	Spy49_0237c			TRUE	0.962	66.000	0.758	1.000	Y	NA
5671704	5671705	Spy49_0238	Spy49_0239		bacA	FALSE	0.255	178.000	0.118	NA		NA
5671705	5671706	Spy49_0239	Spy49_0240	bacA	mecA	FALSE	0.251	146.000	0.132	NA	N	NA
5671706	5671707	Spy49_0240	Spy49_0241	mecA	rgpG	TRUE	0.972	7.000	0.267	NA	N	NA
5671707	5671708	Spy49_0241	Spy49_0242	rgpG		FALSE	0.154	122.000	0.013	1.000	N	NA
5671708	5671709	Spy49_0242	Spy49_0243			TRUE	0.688	95.000	0.139	1.000	Y	NA
5671709	5671710	Spy49_0243	Spy49_0244			TRUE	0.946	31.000	0.606	1.000	N	NA
5671710	5671711	Spy49_0244	Spy49_0245			TRUE	0.974	-13.000	0.292	1.000	N	NA
5671711	5671712	Spy49_0245	Spy49_0246			TRUE	0.996	-7.000	0.152	0.002	N	NA
5671713	5671714	Spy49_0247	Spy49_0248c	pbp7	dacA	TRUE	0.868	214.000	0.231	0.005	Y	NA
5671715	5671716	Spy49_0249	Spy49_0250	oppA	oppB	TRUE	0.971	65.000	0.273	0.035	Y	NA
5671716	5671717	Spy49_0250	Spy49_0251	oppB	oppC	TRUE	0.999	0.000	0.556	0.035	Y	NA
5671717	5671718	Spy49_0251	Spy49_0252	oppC	oppD	TRUE	0.995	9.000	0.650	1.000	Y	NA
5671718	5671719	Spy49_0252	Spy49_0253	oppD	oppF	TRUE	0.998	-7.000	0.095	0.002	Y	NA
5671721	5671722	Spy49_rRNA16s4	Spy49_tRNAala4			TRUE	0.502	50.000	0.000	NA		NA
5671722	5671723	Spy49_tRNAala4	Spy49_rRNA23s4			FALSE	0.059	299.000	0.000	NA		NA
5671723	5671724	Spy49_rRNA23s4	Spy49_rRNA5s4			TRUE	0.297	85.000	0.000	NA		NA
5671724	5671725	Spy49_rRNA5s4	Spy49_tRNAasn1			TRUE	0.890	6.000	0.000	NA		NA
5671725	5671726	Spy49_tRNAasn1	Spy49_tRNAarg3			TRUE	0.326	80.000	0.000	NA		NA
5671726	5671727	Spy49_tRNAarg3	Spy49_0256		comX1	FALSE	0.257	92.000	0.000	NA		NA
5671727	5671728	Spy49_0256	Spy49_0257	comX1		FALSE	0.026	501.000	0.000	1.000		NA
5671728	5671729	Spy49_0257	Spy49_0258			TRUE	0.993	0.000	0.555	1.000		NA
5671729	5671730	Spy49_0258	Spy49_0259			TRUE	0.833	25.000	0.068	NA		NA
5671730	5671731	Spy49_0259	Spy49_0260			TRUE	0.628	69.000	0.150	NA	N	NA
5671731	5671732	Spy49_0260	Spy49_0261			TRUE	0.992	-3.000	0.199	1.000	Y	NA
5671732	5671733	Spy49_0261	Spy49_0262			TRUE	0.978	0.000	0.149	NA		NA
5671733	5671734	Spy49_0262	Spy49_0263			TRUE	0.730	48.000	0.085	NA		NA
5671734	5671735	Spy49_0263	Spy49_0264			FALSE	0.191	222.000	0.094	NA		NA
5671735	5671736	Spy49_0264	Spy49_0265			FALSE	0.057	482.000	0.003	NA		NA
5671736	5671737	Spy49_0265	Spy49_0266		atmA	FALSE	0.043	398.000	0.000	NA		NA
5671737	5671738	Spy49_0266	Spy49_0268	atmA	atmB	FALSE	0.035	327.000	0.000	NA	N	NA
5671738	5671739	Spy49_0268	Spy49_0269	atmB	atmD	FALSE	0.220	250.000	0.000	NA	Y	NA
5671739	5671740	Spy49_0269	Spy49_0270	atmD	atmE	TRUE	0.998	1.000	0.938	1.000	Y	NA
5671743	5671744	Spy49_0273c	Spy49_0274c			TRUE	0.999	10.000	0.490	0.005	Y	NA
5671744	5671745	Spy49_0274c	Spy49_0275		gidB	TRUE	0.334	69.000	0.006	1.000	N	NA
5671746	5671747	Spy49_0276	Spy49_0277	lemA	htpX	TRUE	0.838	47.000	0.222	NA		NA
5671747	5671748	Spy49_0277	Spy49_0278	htpX		FALSE	0.110	234.000	0.002	NA		NA
5671748	5671749	Spy49_0278	Spy49_0279		csrR	FALSE	0.116	267.000	0.014	NA		NA
5671749	5671750	Spy49_0279	Spy49_0280	csrR	csrS	TRUE	0.994	6.000	0.438	1.000	Y	NA
5671750	5671751	Spy49_0280	Spy49_0281	csrS	nrdR.1	FALSE	0.097	215.000	0.007	NA	N	NA
5671751	5671752	Spy49_0281	Spy49_0282	nrdR.1	dnaB	TRUE	0.947	-16.000	0.109	NA	N	NA
5671752	5671753	Spy49_0282	Spy49_0283	dnaB	dnaI	TRUE	0.998	1.000	0.817	NA	Y	NA
5671753	5671754	Spy49_0283	Spy49_0284	dnaI	engA	TRUE	0.492	63.000	0.008	1.000		NA
5671754	5671755	Spy49_0284	Spy49_0285	engA	snf	FALSE	0.100	207.000	0.004	1.000		NA
5671755	5671756	Spy49_0285	Spy49_0286	snf		FALSE	0.217	244.000	0.151	NA		NA
5671756	5671757	Spy49_0286	Spy49_0287		murC1	TRUE	0.705	40.000	0.013	NA		NA
5671757	5671758	Spy49_0287	Spy49_0288	murC1		TRUE	0.610	46.000	0.014	1.000		NA
5671758	5671759	Spy49_0288	Spy49_0289			TRUE	0.382	118.000	0.120	NA		NA
5671759	5671760	Spy49_0289	Spy49_0290		greA	TRUE	0.840	25.000	0.079	NA		NA
5671761	5671762	Spy49_0291	Spy49_0292c	oxaA		TRUE	0.489	82.000	0.154	1.000	N	NA
5671763	5671764	Spy49_0293	Spy49_0294			TRUE	0.693	39.000	0.043	1.000		NA
5671764	5671765	Spy49_0294	Spy49_0295			TRUE	0.921	15.000	0.123	NA		NA
5671765	5671766	Spy49_0295	Spy49_0296			FALSE	0.105	178.000	0.000	NA		NA
5671766	5671767	Spy49_0296	Spy49_0297		glr	FALSE	0.176	178.000	0.014	NA		NA
5671767	5671768	Spy49_0297	Spy49_0298	glr		TRUE	0.939	-3.000	0.034	1.000	N	NA
5671768	5671769	Spy49_0298	Spy49_0299			TRUE	0.951	-21.000	0.085	NA		NA
5671769	5671770	Spy49_0299	Spy49_0300			TRUE	0.969	-3.000	0.065	NA		NA
5671770	5671771	Spy49_0300	Spy49_0301		xerD	TRUE	0.968	-3.000	0.111	1.000		NA
5671771	5671772	Spy49_0301	Spy49_0302	xerD		TRUE	0.961	0.000	0.017	NA		NA
5671772	5671773	Spy49_0302	Spy49_0303			TRUE	0.994	-3.000	0.570	NA		NA
5671773	5671774	Spy49_0303	Spy49_0304		rluB	TRUE	0.435	121.000	0.224	NA	N	NA
5671774	5671775	Spy49_0304	Spy49_0305	rluB		TRUE	0.960	0.000	0.014	NA		NA
5671775	5671776	Spy49_0305	Spy49_0306			FALSE	0.145	178.000	0.002	NA		NA
5671776	5671777	Spy49_0306	Spy49_0307			FALSE	0.056	311.000	0.000	NA		NA
5671777	5671778	Spy49_0307	Spy49_0308			TRUE	0.550	225.000	0.600	NA		NA
5671778	5671779	Spy49_0308	Spy49_0309			FALSE	0.097	292.000	0.050	1.000		NA
5671779	5671780	Spy49_0309	Spy49_0310			TRUE	0.923	39.000	0.408	NA		NA
5671780	5671781	Spy49_0310	Spy49_0311		hlyX	FALSE	0.239	134.000	0.023	NA		NA
5671781	5671782	Spy49_0311	Spy49_0312	hlyX	pflC	TRUE	0.943	6.000	0.028	NA		NA
5671782	5671783	Spy49_0312	Spy49_0313	pflC		FALSE	0.150	131.000	0.023	1.000	N	NA
5671783	5671784	Spy49_0313	Spy49_0314			TRUE	0.494	76.000	0.015	NA		NA
5671785	5671786	Spy49_0315	Spy49_0316	fhuG	fhuB1	TRUE	0.999	-39.000	0.857	0.034	Y	NA
5671786	5671787	Spy49_0316	Spy49_0317c	fhuB1	fhuD	TRUE	0.989	-10.000	0.179	1.000	Y	NA
5671787	5671788	Spy49_0317c	Spy49_0318	fhuD	fhuC1	TRUE	0.990	26.000	0.889	1.000	Y	NA
5671788	5671789	Spy49_0318	Spy49_0319c	fhuC1	murE	FALSE	0.092	246.000	0.062	1.000	N	NA
5671790	5671791	Spy49_0320	Spy49_0322		upp	FALSE	0.120	167.000	0.002	1.000		NA
5671791	5671792	Spy49_0322	Spy49_0323	upp	clpP	FALSE	0.070	224.000	0.010	1.000	N	NA
5671792	5671793	Spy49_0323	Spy49_0325	clpP		FALSE	0.083	492.000	0.065	NA		NA
5671793	5671794	Spy49_0325	Spy49_0326		tmk	FALSE	0.073	249.000	0.000	NA		NA
5671794	5671795	Spy49_0326	Spy49_0327	tmk		TRUE	0.917	18.000	0.254	1.000	N	NA
5671795	5671796	Spy49_0327	Spy49_0328			FALSE	0.051	348.000	0.000	NA		NA
5671796	5671797	Spy49_0328	Spy49_0329			FALSE	0.120	155.000	0.000	NA		NA
5671797	5671798	Spy49_0329	Spy49_0330			TRUE	0.948	5.000	0.043	NA		NA
5671798	5671799	Spy49_0330	Spy49_0331			TRUE	0.758	27.000	0.005	NA		NA
5671803	5671804	Spy49_0335	Spy49_0336	lctO	prtS	FALSE	0.036	342.000	0.000	1.000		NA
5671804	5671805	Spy49_0336	Spy49_0337	prtS		FALSE	0.031	827.000	0.000	NA		NA
5671805	5671806	Spy49_0337	Spy49_0338		metS	FALSE	0.076	240.000	0.000	NA		NA
5671806	5671807	Spy49_0338	Spy49_0339	metS	nrdF.2	FALSE	0.014	498.000	0.000	1.000	N	NA
5671807	5671808	Spy49_0339	Spy49_0340	nrdF.2	nrdI.2	TRUE	0.997	4.000	0.643	NA	Y	NA
5671808	5671809	Spy49_0340	Spy49_0341	nrdI.2	nrdE.2	TRUE	0.998	-33.000	1.000	NA	Y	NA
5671811	5671812	Spy49_0343	Spy49_0344			TRUE	0.862	-52.000	0.000	NA		NA
5671813	5671814	Spy49_0345c	Spy49_0346c			FALSE	0.069	261.000	0.000	NA		NA
5671815	5671816	Spy49_0347	Spy49_0348			FALSE	0.035	630.000	0.000	NA		NA
5671817	5671818	Spy49_0349c	Spy49_0350c			FALSE	0.033	719.000	0.000	NA		NA
5671818	5671819	Spy49_0350c	Spy49_0351c			TRUE	0.422	158.000	0.250	NA		NA
5671819	5671820	Spy49_0351c	Spy49_0352c			FALSE	0.131	139.000	0.000	NA		NA
5671820	5671821	Spy49_0352c	Spy49_0353c			TRUE	0.972	44.000	1.000	NA		NA
5671821	5671822	Spy49_0353c	Spy49_0354c			TRUE	0.876	-25.000	0.000	NA		NA
5671822	5671823	Spy49_0354c	Spy49_0355c			TRUE	0.334	363.000	0.000	0.005		NA
5671823	5671824	Spy49_0355c	Spy49_0356c			FALSE	0.206	106.000	0.000	NA		NA
5671824	5671825	Spy49_0356c	Spy49_0357c			TRUE	0.593	37.000	0.000	NA		NA
5671825	5671826	Spy49_0357c	Spy49_0358c			TRUE	0.912	-10.000	0.000	NA		NA
5671826	5671827	Spy49_0358c	Spy49_0359c			FALSE	0.068	266.000	0.000	NA		NA
5671827	5671828	Spy49_0359c	Spy49_0360c			FALSE	0.103	181.000	0.000	NA		NA
5671828	5671829	Spy49_0360c	Spy49_0361c			FALSE	0.062	288.000	0.000	NA		NA
5671829	5671830	Spy49_0361c	Spy49_0362c			TRUE	0.976	-31.000	0.286	NA		NA
5671830	5671831	Spy49_0362c	Spy49_0363c			TRUE	0.716	144.000	0.714	NA		NA
5671831	5671832	Spy49_0363c	Spy49_0364c			TRUE	0.909	3.000	0.000	NA		NA
5671832	5671833	Spy49_0364c	Spy49_0365c			FALSE	0.080	227.000	0.000	NA		NA
5671833	5671834	Spy49_0365c	Spy49_0366c			TRUE	0.931	-3.000	0.000	NA		NA
5671834	5671835	Spy49_0366c	Spy49_0367c			FALSE	0.037	525.000	0.000	NA		NA
5671835	5671836	Spy49_0367c	Spy49_0368c			TRUE	0.780	16.000	0.000	NA		NA
5671837	5671838	Spy49_0369	Spy49_0370			FALSE	0.235	82.000	0.000	1.000		NA
5671838	5671839	Spy49_0370	Spy49_0371			FALSE	0.031	870.000	0.000	NA		NA
5671839	5671840	Spy49_0371	Spy49_0372			TRUE	0.995	-7.000	0.710	NA		NA
5671840	5671841	Spy49_0372	Spy49_0373			TRUE	0.487	76.000	0.067	1.000		NA
5671841	5671842	Spy49_0373	Spy49_0374		glpT	FALSE	0.053	333.000	0.000	NA		NA
5671842	5671843	Spy49_0374	Spy49_0375	glpT	glmU	FALSE	0.111	173.000	0.002	NA	N	NA
5671843	5671844	Spy49_0375	Spy49_0376	glmU		TRUE	0.636	31.000	0.015	1.000	N	NA
5671844	5671845	Spy49_0376	Spy49_0377			TRUE	0.963	0.000	0.025	NA		NA
5671845	5671846	Spy49_0377	Spy49_0378		pfs	TRUE	0.853	20.000	0.041	NA		NA
5671846	5671847	Spy49_0378	Spy49_0379	pfs		FALSE	0.122	151.000	0.000	NA		NA
5671849	5671850	Spy49_0381	Spy49_0382	mtsA	mtsB	TRUE	0.838	64.000	0.135	1.000	Y	NA
5671850	5671851	Spy49_0382	Spy49_0383	mtsB	mtsC	TRUE	0.988	1.000	0.130	1.000	Y	NA
5671855	5671856	Spy49_0387	Spy49_0388	rplK	rplA	TRUE	0.977	106.000	0.838	0.042	Y	NA
5671856	5671857	Spy49_0388	Spy49_0390	rplA	pyrH	FALSE	0.037	322.000	0.002	1.000	N	NA
5671857	5671858	Spy49_0390	Spy49_0391	pyrH	rrf	TRUE	0.949	29.000	0.626	1.000	N	NA
5671858	5671859	Spy49_0391	Spy49_0392	rrf		TRUE	0.297	109.000	0.012	NA		NA
5671859	5671860	Spy49_0392	Spy49_0394		mrsA	TRUE	0.517	73.000	0.016	NA		NA
5671860	5671861	Spy49_0394	Spy49_0395	mrsA		TRUE	0.963	-3.000	0.080	1.000		NA
5671861	5671862	Spy49_0395	Spy49_0396			FALSE	0.171	156.000	0.023	1.000		NA
5671862	5671863	Spy49_0396	Spy49_0398			FALSE	0.065	275.000	0.000	NA		NA
5671863	5671864	Spy49_0398	Spy49_0399		phoH	FALSE	0.168	159.000	0.004	NA		NA
5671864	5671865	Spy49_0399	Spy49_0400	phoH		TRUE	0.551	46.000	0.005	NA	N	NA
5671865	5671866	Spy49_0400	Spy49_0401			FALSE	0.166	159.000	0.003	NA		NA
5671866	5671867	Spy49_0401	Spy49_0402		dgk	TRUE	0.943	-19.000	0.035	NA		NA
5671867	5671868	Spy49_0402	Spy49_0403	dgk	era	FALSE	0.265	120.000	0.063	1.000		NA
5671868	5671869	Spy49_0403	Spy49_0404	era		TRUE	0.754	21.000	0.007	1.000		NA
5671872	5671873	Spy49_0407c	Spy49_0408c			TRUE	0.991	-3.000	0.000	0.010		NA
5671874	5671875	Spy49_0409	Spy49_0410			FALSE	0.032	752.000	0.000	NA		NA
5671875	5671876	Spy49_0410	Spy49_0411			FALSE	0.085	216.000	0.000	NA		NA
5671876	5671877	Spy49_0411	Spy49_0412			FALSE	0.063	285.000	0.000	NA		NA
5671877	5671878	Spy49_0412	Spy49_0413			FALSE	0.252	93.000	0.000	NA		NA
5671880	5671881	Spy49_0415	Spy49_0416	mutR	fpg	FALSE	0.123	172.000	0.004	1.000		NA
5671881	5671882	Spy49_0416	Spy49_0417	fpg		TRUE	0.908	-21.000	0.066	1.000	N	NA
5671882	5671883	Spy49_0417	Spy49_0418			FALSE	0.068	190.000	0.000	1.000		NA
5671883	5671884	Spy49_0418	Spy49_0419			FALSE	0.191	122.000	0.007	1.000		NA
5671884	5671885	Spy49_0419	Spy49_0420			TRUE	0.925	-3.000	0.012	1.000	N	NA
5671885	5671886	Spy49_0420	Spy49_0421			TRUE	0.503	46.000	0.012	1.000	N	NA
5671886	5671887	Spy49_0421	Spy49_0422		vacB	TRUE	0.295	94.000	0.064	1.000	N	NA
5671887	5671888	Spy49_0422	Spy49_0423	vacB	smpB	TRUE	0.991	3.000	0.143	0.034	N	NA
5671888	5671889	Spy49_0423	Spy49_0424	smpB		TRUE	0.918	15.000	0.000	1.000	Y	NA
5671890	5671891	Spy49_0425c	Spy49_0426c	pcp		TRUE	0.864	51.000	0.300	NA		NA
5671891	5671892	Spy49_0426c	Spy49_0427c			TRUE	0.997	0.000	0.939	NA		NA
5671892	5671893	Spy49_0427c	Spy49_0428c			FALSE	0.087	211.000	0.000	NA		NA
5671893	5671894	Spy49_0428c	Spy49_0429c		gloA	FALSE	0.155	145.000	0.012	NA	N	NA
5671894	5671895	Spy49_0429c	Spy49_0430c	gloA		TRUE	0.848	11.000	0.019	1.000	N	NA
5671895	5671896	Spy49_0430c	Spy49_0431c		pepQ	TRUE	0.552	49.000	0.053	1.000	N	NA
5671897	5671898	Spy49_0432	Spy49_0433	ccpA		FALSE	0.158	131.000	0.033	1.000	N	NA
5671898	5671899	Spy49_0433	Spy49_0434			TRUE	0.999	2.000	0.413	0.012	Y	NA
5671899	5671900	Spy49_0434	Spy49_0435		thrS	FALSE	0.016	422.000	0.000	1.000	N	NA
5671900	5671901	Spy49_0435	Spy49_0436	thrS	tagH	FALSE	0.163	141.000	0.012	1.000		NA
5671901	5671902	Spy49_0436	Spy49_0437	tagH		TRUE	0.918	2.000	0.000	NA		NA
5671902	5671903	Spy49_0437	Spy49_0438			TRUE	0.960	2.000	0.042	NA		NA
5671903	5671904	Spy49_0438	Spy49_0439			FALSE	0.093	201.000	0.000	NA		NA
5671904	5671905	Spy49_0439	Spy49_0440			FALSE	0.030	395.000	0.000	1.000		NA
5671905	5671906	Spy49_0440	Spy49_0441			TRUE	0.994	-43.000	0.576	1.000	Y	NA
5671906	5671907	Spy49_0441	Spy49_0442			TRUE	0.649	56.000	0.030	NA		NA
5671907	5671908	Spy49_0442	Spy49_0444		vicR	FALSE	0.190	162.000	0.013	NA		NA
5671908	5671909	Spy49_0444	Spy49_0445	vicR	vicK	TRUE	0.999	-7.000	0.597	0.053	Y	NA
5671909	5671910	Spy49_0445	Spy49_0446	vicK	vicX	TRUE	0.937	4.000	0.038	1.000		NA
5671910	5671911	Spy49_0446	Spy49_0447	vicX	acpA	FALSE	0.042	445.000	0.002	1.000		NA
5671911	5671912	Spy49_0447	Spy49_0448	acpA	smc	TRUE	0.955	1.000	0.120	1.000	N	NA
5671914	5671915	Spy49_0450	Spy49_0451	aroE.2		TRUE	0.896	-3.000	0.000	NA	N	NA
5671915	5671916	Spy49_0451	Spy49_0453			TRUE	0.918	2.000	0.000	NA		NA
5671916	5671917	Spy49_0453	Spy49_0454			TRUE	0.923	-7.000	0.000	NA		NA
5671917	5671918	Spy49_0454	Spy49_0455			TRUE	0.863	10.000	0.000	NA		NA
5671918	5671919	Spy49_0455	Spy49_0456			TRUE	0.893	-16.000	0.000	NA		NA
5671919	5671920	Spy49_0456	Spy49_0457			FALSE	0.167	121.000	0.000	NA		NA
5671920	5671921	Spy49_0457	Spy49_0458			FALSE	0.043	403.000	0.000	NA		NA
5671921	5671922	Spy49_0458	Spy49_0459			TRUE	0.690	24.000	0.000	NA		NA
5671922	5671923	Spy49_0459	Spy49_0460			FALSE	0.223	85.000	0.000	1.000		NA
5671924	5671925	Spy49_0461c	Spy49_0462c			TRUE	0.989	-10.000	0.400	NA		NA
5671925	5671926	Spy49_0462c	Spy49_0463c			TRUE	0.917	-9.000	0.000	NA		NA
5671926	5671927	Spy49_0463c	Spy49_0464c			TRUE	0.988	4.000	0.429	NA		NA
5671928	5671929	Spy49_0465	Spy49_0466			TRUE	0.479	55.000	0.000	NA		NA
5671929	5671930	Spy49_0466	Spy49_0467			FALSE	0.147	129.000	0.000	NA		NA
5671930	5671931	Spy49_0467	Spy49_0468			FALSE	0.044	396.000	0.000	NA		NA
5671931	5671932	Spy49_0468	Spy49_0469			TRUE	0.409	66.000	0.000	NA		NA
5671934	5671935	Spy49_0471	Spy49_0473			TRUE	0.444	45.000	0.000	1.000		NA
5671935	5671936	Spy49_0473	Spy49_0474			FALSE	0.083	161.000	0.000	1.000		NA
5671936	5671937	Spy49_0474	Spy49_0475			FALSE	0.052	228.000	0.000	NA	N	NA
5671937	5671938	Spy49_0475	Spy49_0476			FALSE	0.071	176.000	0.000	NA	N	NA
5671939	5671940	Spy49_0477c	Spy49_0478c			TRUE	0.980	48.000	0.333	0.065	Y	NA
5671941	5671942	Spy49_0479	Spy49_0480			TRUE	0.401	67.000	0.000	NA		NA
5671942	5671943	Spy49_0480	Spy49_0481			TRUE	0.997	4.000	0.375	0.019		NA
5671943	5671944	Spy49_0481	Spy49_0482		ftsY	TRUE	0.987	0.000	0.007	0.078		NA
5671946	5671947	Spy49_0484	Spy49_0485	bglG		TRUE	0.981	2.000	0.259	1.000		NA
5671947	5671948	Spy49_0485	Spy49_0487		bglA	TRUE	0.975	19.000	0.318	1.000	Y	NA
5671949	5671950	Spy49_0488c	Spy49_0489c			TRUE	0.997	0.000	0.841	NA		NA
5671951	5671952	Spy49_0490	Spy49_0491			TRUE	0.967	-58.000	0.215	NA		NA
5671952	5671953	Spy49_0491	Spy49_0493			TRUE	0.621	64.000	0.051	NA		NA
5671953	5671954	Spy49_0493	Spy49_0494		ptsK	FALSE	0.255	305.000	0.017	NA	Y	NA
5671954	5671955	Spy49_0494	Spy49_0495	ptsK	lgt	TRUE	0.990	-3.000	0.494	1.000	N	NA
5671955	5671956	Spy49_0495	Spy49_0496	lgt		TRUE	0.856	22.000	0.079	NA		NA
5671956	5671957	Spy49_0496	Spy49_0497			TRUE	0.982	-7.000	0.206	NA		NA
5671957	5671958	Spy49_0497	Spy49_0498			TRUE	0.460	59.000	0.000	NA		NA
5671958	5671959	Spy49_0498	Spy49_0499			FALSE	0.055	318.000	0.000	NA		NA
5671959	5671960	Spy49_0499	Spy49_0500			TRUE	0.939	102.000	0.156	0.003	Y	NA
5671960	5671961	Spy49_0500	Spy49_0501			FALSE	0.093	201.000	0.000	NA		NA
5671962	5671963	Spy49_0502c	Spy49_0503c		lysS	FALSE	0.135	136.000	0.000	NA		NA
5671965	5671966	Spy49_0505c	Spy49_0506c			FALSE	0.095	341.000	0.018	NA		NA
5671966	5671967	Spy49_0506c	Spy49_0507c			TRUE	0.378	91.000	0.010	NA		NA
5671967	5671968	Spy49_0507c	Spy49_0508c			FALSE	0.118	269.000	0.016	NA		NA
5671969	5671970	Spy49_0509	Spy49_0510			TRUE	0.985	-16.000	0.375	NA		NA
5671971	5671972	Spy49_0511c	Spy49_0512c		pepF	TRUE	0.937	-7.000	0.059	1.000	N	NA
5671973	5671974	Spy49_0513	Spy49_0514	ppc	ftsW	FALSE	0.121	170.000	0.028	1.000	N	NA
5671974	5671975	Spy49_0514	Spy49_0515	ftsW	tufA	FALSE	0.012	725.000	0.000	1.000	N	NA
5671975	5671976	Spy49_0515	Spy49_0516	tufA	tpi	FALSE	0.055	241.000	0.003	1.000	N	NA
5671977	5671978	Spy49_0517c	Spy49_0518c	murN	murM.1	TRUE	0.998	-13.000	0.200	0.011	Y	NA
5671978	5671979	Spy49_0518c	Spy49_0519c	murM.1		TRUE	0.992	0.000	0.500	1.000		NA
5671979	5671980	Spy49_0519c	Spy49_0520c			FALSE	0.061	456.000	0.035	1.000		NA
5671981	5671982	Spy49_0521	Spy49_0522		pacL	FALSE	0.079	231.000	0.000	NA		NA
5671983	5671984	Spy49_0523c	Spy49_0524c	regR		TRUE	0.905	64.000	0.562	NA		NA
5671984	5671985	Spy49_0524c	Spy49_0525c		agaD	TRUE	0.760	87.000	0.375	NA		NA
5671985	5671986	Spy49_0525c	Spy49_0526c	agaD	agaW	TRUE	1.000	-13.000	0.933	0.026	Y	NA
5671986	5671987	Spy49_0526c	Spy49_0527c	agaW	agaV	TRUE	0.998	19.000	0.933	0.026	Y	NA
5671987	5671988	Spy49_0527c	Spy49_0528c	agaV	ugl	TRUE	0.842	36.000	0.200	1.000		NA
5671988	5671989	Spy49_0528c	Spy49_0529c	ugl	agaF	TRUE	0.968	0.000	0.120	1.000		NA
5671990	5671991	Spy49_0530	Spy49_0531			TRUE	0.850	25.000	0.197	1.000	N	NA
5671991	5671992	Spy49_0531	Spy49_0532		kdgK	TRUE	0.919	29.000	0.094	1.000	Y	NA
5671992	5671993	Spy49_0532	Spy49_0533	kdgK	kdgA	TRUE	0.986	5.000	0.167	1.000	Y	NA
5671993	5671994	Spy49_0533	Spy49_0534	kdgA		FALSE	0.235	298.000	0.000	0.048		NA
5671994	5671995	Spy49_0534	Spy49_0535			FALSE	0.023	696.000	0.000	1.000		NA
5671995	5671996	Spy49_0535	Spy49_0536		prfB	FALSE	0.080	186.000	0.006	1.000	N	NA
5671996	5671997	Spy49_0536	Spy49_0537	prfB	ftsE	TRUE	0.777	19.000	0.053	1.000	N	NA
5671997	5671998	Spy49_0537	Spy49_0538	ftsE	ftsX	TRUE	0.995	-7.000	0.431	1.000	Y	NA
5672000	5672001	Spy49_0540	Spy49_0541		dinG	FALSE	0.084	108.000	0.000	1.000	N	NA
5672001	5672002	Spy49_0541	Spy49_0543	dinG	aspC	FALSE	0.020	335.000	0.000	1.000	N	NA
5672002	5672003	Spy49_0543	Spy49_0544	aspC	asnS	TRUE	0.769	21.000	0.068	1.000	N	NA
5672003	5672004	Spy49_0544	Spy49_0545	asnS		FALSE	0.042	415.000	0.000	NA		NA
5672004	5672005	Spy49_0545	Spy49_0546			TRUE	0.984	-3.000	0.214	NA		NA
5672005	5672006	Spy49_0546	Spy49_0547			TRUE	0.993	-3.000	0.470	NA		NA
5672006	5672007	Spy49_0547	Spy49_0548		pepD	FALSE	0.230	133.000	0.015	NA		NA
5672007	5672008	Spy49_0548	Spy49_0549	pepD	adcA	TRUE	0.324	152.000	0.250	1.000	N	NA
5672008	5672009	Spy49_0549	Spy49_0550	adcA		FALSE	0.174	150.000	0.091	1.000	N	NA
5672009	5672010	Spy49_0550	Spy49_0551		agaS	TRUE	0.869	20.000	0.178	1.000	N	NA
5672011	5672012	Spy49_0552c	Spy49_0554c	rpmE		FALSE	0.249	115.000	0.020	1.000		NA
5672013	5672014	Spy49_0555	Spy49_0556	flaV		FALSE	0.217	176.000	0.167	1.000	N	NA
5672014	5672015	Spy49_0556	Spy49_0557			TRUE	0.948	-7.000	0.094	1.000	N	NA
5672015	5672016	Spy49_0557	Spy49_0558		rplS	FALSE	0.148	115.000	0.006	1.000	N	NA
5672016	5672017	Spy49_0558	Spy49_tRNAarg4	rplS		FALSE	0.075	242.000	0.000	NA		NA
5672017	5672018	Spy49_tRNAarg4	Spy49_0559			FALSE	0.033	708.000	0.000	NA		NA
5672018	5672019	Spy49_0559	Spy49_0560		gyrB	TRUE	0.943	1.000	0.013	1.000		NA
5672019	5672020	Spy49_0560	Spy49_0561	gyrB	ezrA	FALSE	0.042	368.000	0.011	1.000	N	NA
5672023	5672024	Spy49_0564c	Spy49_0565c			TRUE	0.290	86.000	0.000	NA		NA
5672024	5672025	Spy49_0565c	Spy49_0566c			FALSE	0.048	362.000	0.000	NA		NA
5672026	5672027	Spy49_0567	Spy49_0568		sagA	FALSE	0.031	865.000	0.000	NA		NA
5672027	5672028	Spy49_0568	Spy49_0569	sagA	sagB	FALSE	0.082	222.000	0.000	NA		NA
5672028	5672029	Spy49_0569	Spy49_0570	sagB	sagC	TRUE	0.983	-3.000	0.200	NA		NA
5672029	5672030	Spy49_0570	Spy49_0572	sagC	sagD	TRUE	0.949	20.000	0.318	NA		NA
5672030	5672031	Spy49_0572	Spy49_0573	sagD	sagE	TRUE	0.957	-25.000	0.136	NA		NA
5672031	5672032	Spy49_0573	Spy49_0574	sagE	sagF	TRUE	0.996	-3.000	0.750	NA		NA
5672032	5672033	Spy49_0574	Spy49_0575	sagF	sagG	TRUE	0.978	23.000	0.750	NA		NA
5672033	5672034	Spy49_0575	Spy49_0576	sagG	sagH	TRUE	0.982	9.000	0.500	1.000	N	NA
5672034	5672035	Spy49_0576	Spy49_0577	sagH	sagI	TRUE	0.999	-3.000	0.160	0.008	Y	NA
5672035	5672036	Spy49_0577	Spy49_0578	sagI		FALSE	0.024	571.000	0.000	1.000		NA
5672036	5672037	Spy49_0578	Spy49_0579			FALSE	0.064	278.000	0.000	NA		NA
5672037	5672038	Spy49_0579	Spy49_0580		lig	FALSE	0.154	194.000	0.010	NA		NA
5672038	5672039	Spy49_0580	Spy49_0581	lig		TRUE	0.794	14.000	0.013	1.000	N	NA
5672039	5672040	Spy49_0581	Spy49_0582			FALSE	0.267	395.000	0.000	0.012		NA
5672040	5672041	Spy49_0582	Spy49_0583			TRUE	0.971	35.000	0.189	0.012		NA
5672041	5672042	Spy49_0583	Spy49_0584			TRUE	0.989	18.000	0.032	0.012	Y	NA
5672042	5672043	Spy49_0584	Spy49_0585			TRUE	0.999	0.000	0.222	0.009	Y	NA
5672043	5672044	Spy49_0585	Spy49_0586			TRUE	0.999	16.000	0.864	0.009	Y	NA
5672044	5672045	Spy49_0586	Spy49_0587			TRUE	0.999	16.000	0.846	0.009	Y	NA
5672045	5672046	Spy49_0587	Spy49_0588			TRUE	0.963	162.000	0.724	0.009	Y	NA
5672046	5672047	Spy49_0588	Spy49_0589			TRUE	0.999	13.000	0.837	0.009	Y	NA
5672047	5672048	Spy49_0589	Spy49_0590			FALSE	0.133	266.000	0.039	NA		NA
5672048	5672049	Spy49_0590	Spy49_0591		murA	TRUE	0.808	65.000	0.279	NA		NA
5672049	5672050	Spy49_0591	Spy49_0592	murA		TRUE	0.963	4.000	0.110	NA		NA
5672050	5672051	Spy49_0592	Spy49_0593		endA	TRUE	0.601	36.000	0.000	NA		NA
5672051	5672052	Spy49_0593	Spy49_0594	endA		TRUE	0.901	-13.000	0.000	NA		NA
5672052	5672053	Spy49_0594	Spy49_0596		pheS	FALSE	0.063	283.000	0.000	NA		NA
5672053	5672054	Spy49_0596	Spy49_0597	pheS	pheT	TRUE	0.953	210.000	0.574	0.001	Y	NA
5672054	5672055	Spy49_0597	Spy49_0598	pheT		FALSE	0.140	110.000	0.002	1.000	N	NA
5672055	5672056	Spy49_0598	Spy49_0599			TRUE	0.950	-7.000	0.006	NA		NA
5672056	5672057	Spy49_0599	Spy49_0600			TRUE	0.365	73.000	0.000	NA		NA
5672057	5672058	Spy49_0600	Spy49_0601			TRUE	0.961	10.000	0.222	1.000		NA
5672060	5672061	Spy49_0603	Spy49_0604	rexB	rexA	TRUE	0.992	-39.000	0.070	0.064	Y	NA
5672061	5672062	Spy49_0604	Spy49_0605	rexA		FALSE	0.052	140.000	0.000	1.000	N	NA
5672062	5672063	Spy49_0605	Spy49_0606		rpsU	FALSE	0.079	339.000	0.027	1.000		NA
5672065	5672066	Spy49_0608	Spy49_0609	dnaG	rpoD	TRUE	0.954	9.000	0.209	1.000	N	NA
5672066	5672067	Spy49_0609	Spy49_0610	rpoD		FALSE	0.151	236.000	0.044	NA		NA
5672067	5672068	Spy49_0610	Spy49_0611		rmlD	TRUE	0.347	138.000	0.152	NA		NA
5672068	5672069	Spy49_0611	Spy49_0612	rmlD	rgpAc	TRUE	0.667	119.000	0.212	1.000	Y	NA
5672069	5672070	Spy49_0612	Spy49_0613	rgpAc	rgpBc	TRUE	0.985	-10.000	0.289	NA		NA
5672070	5672071	Spy49_0613	Spy49_0614	rgpBc	rgpCc	TRUE	0.984	3.000	0.289	NA		NA
5672071	5672072	Spy49_0614	Spy49_0615	rgpCc	rgpDc	TRUE	0.829	0.000	0.000	1.000	N	NA
5672072	5672073	Spy49_0615	Spy49_0617	rgpDc	rgpEc	TRUE	0.845	11.000	0.000	NA		NA
5672073	5672074	Spy49_0617	Spy49_0618	rgpEc	rgpFc	TRUE	0.991	-3.000	0.385	NA		NA
5672074	5672075	Spy49_0618	Spy49_0619	rgpFc		TRUE	0.980	-3.000	0.000	NA	Y	NA
5672075	5672076	Spy49_0619	Spy49_0620			TRUE	0.293	179.000	0.000	NA	Y	NA
5672076	5672077	Spy49_0620	Spy49_0621			TRUE	0.993	2.000	0.568	NA		NA
5672077	5672078	Spy49_0621	Spy49_0622			TRUE	0.961	-7.000	0.027	NA		NA
5672078	5672079	Spy49_0622	Spy49_0623			TRUE	0.969	-19.000	0.182	NA		NA
5672079	5672080	Spy49_0623	Spy49_0624		pepT	FALSE	0.246	94.000	0.000	NA		NA
5672080	5672081	Spy49_0624	Spy49_0625	pepT		TRUE	0.738	41.000	0.051	NA		NA
5672083	5672084	Spy49_0627	Spy49_0628		cmk	TRUE	0.836	15.000	0.012	1.000		NA
5672084	5672085	Spy49_0628	Spy49_0629	cmk	infC	FALSE	0.102	162.000	0.010	1.000	N	NA
5672085	5672086	Spy49_0629	Spy49_0630	infC	rpmI	TRUE	0.974	42.000	0.652	1.000	Y	NA
5672086	5672087	Spy49_0630	Spy49_0631	rpmI	rplT	TRUE	0.994	59.000	0.928	0.030	Y	NA
5672089	5672090	Spy49_0633	Spy49_0634		aroD	TRUE	0.976	-3.000	0.125	NA		NA
5672090	5672091	Spy49_0634	Spy49_0635	aroD	aroF	TRUE	0.910	94.000	0.004	0.003	Y	NA
5672091	5672092	Spy49_0635	Spy49_0636	aroF		TRUE	0.556	61.000	0.005	NA		NA
5672092	5672093	Spy49_0636	Spy49_0637		gor	FALSE	0.132	222.000	0.010	NA		NA
5672094	5672095	Spy49_0638c	Spy49_0639c	folC.2		TRUE	0.924	30.000	0.308	NA		NA
5672096	5672097	Spy49_0640	Spy49_0641	nifS	thiI	TRUE	0.960	12.000	0.349	1.000	N	NA
5672097	5672098	Spy49_0641	Spy49_0642	thiI		TRUE	0.574	38.000	0.014	1.000	N	NA
5672098	5672099	Spy49_0642	Spy49_0643		rplU	FALSE	0.030	239.000	0.000	1.000	N	NA
5672099	5672100	Spy49_0643	Spy49_0644	rplU		TRUE	0.983	12.000	0.208	NA	Y	NA
5672100	5672101	Spy49_0644	Spy49_0645		rpmA	TRUE	0.956	28.000	0.203	NA	Y	NA
5672101	5672102	Spy49_0645	Spy49_0646	rpmA		FALSE	0.019	348.000	0.000	1.000	N	NA
5672102	5672103	Spy49_0646	Spy49_0647		lsp	TRUE	0.959	-3.000	0.119	1.000	N	NA
5672103	5672104	Spy49_0647	Spy49_0648	lsp		TRUE	0.937	-10.000	0.082	1.000	N	NA
5672104	5672105	Spy49_0648	Spy49_0650		pyrR	FALSE	0.051	396.000	0.048	1.000	N	NA
5672105	5672106	Spy49_0650	Spy49_0651	pyrR	pyrP	TRUE	0.961	16.000	0.140	1.000	Y	NA
5672106	5672107	Spy49_0651	Spy49_0652	pyrP	pyrB	TRUE	0.814	61.000	0.064	1.000	Y	NA
5672107	5672108	Spy49_0652	Spy49_0653	pyrB	carA	TRUE	0.841	44.000	0.014	1.000	Y	NA
5672108	5672109	Spy49_0653	Spy49_0654	carA	carB	TRUE	0.824	246.000	0.117	0.001	Y	NA
5672109	5672110	Spy49_0654	Spy49_0655	carB		FALSE	0.089	209.000	0.017	1.000	N	NA
5672110	5672111	Spy49_0655	Spy49_0656			TRUE	0.996	0.000	0.923	1.000	N	NA
5672111	5672112	Spy49_0656	Spy49_0657			TRUE	0.996	12.000	0.923	1.000	Y	NA
5672112	5672113	Spy49_0657	Spy49_0658			FALSE	0.027	254.000	0.000	1.000	N	NA
5672113	5672114	Spy49_0658	Spy49_0659		rpsP	FALSE	0.112	127.000	0.003	1.000	N	NA
5672114	5672115	Spy49_0659	Spy49_0660	rpsP		TRUE	0.977	10.000	0.385	1.000		NA
5672115	5672116	Spy49_0660	Spy49_0661			FALSE	0.021	932.000	0.000	1.000		NA
5672116	5672117	Spy49_0661	Spy49_0662			TRUE	0.906	20.000	0.200	1.000		NA
5672119	5672120	Spy49_0664	Spy49_0665		rimM	FALSE	0.034	215.000	0.000	1.000	N	NA
5672120	5672121	Spy49_0665	Spy49_0667	rimM	trmD	TRUE	0.997	-13.000	0.672	1.000	Y	NA
5672121	5672122	Spy49_0667	Spy49_0668	trmD		TRUE	0.913	0.000	0.007	1.000	N	NA
5672122	5672123	Spy49_0668	Spy49_0669			FALSE	0.209	177.000	0.059	NA		NA
5672123	5672124	Spy49_0669	Spy49_0671		apbA	TRUE	0.970	13.000	0.333	NA		NA
5672124	5672125	Spy49_0671	Spy49_0672	apbA	fruR	FALSE	0.027	256.000	0.000	1.000	N	NA
5672125	5672126	Spy49_0672	Spy49_0673	fruR	fruK	TRUE	0.998	-3.000	0.721	1.000	Y	NA
5672126	5672127	Spy49_0673	Spy49_0674	fruK	fruA	TRUE	0.998	-3.000	0.816	1.000	Y	NA
5672127	5672128	Spy49_0674	Spy49_0675	fruA		FALSE	0.236	99.000	0.022	1.000	N	NA
5672128	5672129	Spy49_0675	Spy49_0676			TRUE	0.938	152.000	0.333	0.002	Y	NA
5672130	5672131	Spy49_0677c	Spy49_0678c			FALSE	0.060	297.000	0.000	NA		NA
5672131	5672132	Spy49_0678c	Spy49_0679		mac	FALSE	0.108	176.000	0.000	NA		NA
5672133	5672134	Spy49_0680	Spy49_0681			TRUE	0.977	0.000	0.139	NA		NA
5672134	5672135	Spy49_0681	Spy49_0682		papS	FALSE	0.170	174.000	0.009	NA		NA
5672135	5672136	Spy49_0682	Spy49_0683	papS		TRUE	0.958	-3.000	0.056	1.000		NA
5672136	5672137	Spy49_0683	Spy49_0684			FALSE	0.021	894.000	0.000	1.000		NA
5672139	5672140	Spy49_0687	Spy49_0688			TRUE	0.994	3.000	0.800	1.000		NA
5672140	5672141	Spy49_0688	Spy49_0689			TRUE	0.994	9.000	0.533	1.000	Y	NA
5672141	5672142	Spy49_0689	Spy49_0690		mvaK1	FALSE	0.023	294.000	0.000	1.000	N	NA
5672142	5672143	Spy49_0690	Spy49_0691	mvaK1	mvaD	TRUE	0.999	-18.000	0.281	0.003	Y	NA
5672143	5672144	Spy49_0691	Spy49_0692	mvaD	mvaK2	TRUE	0.999	-7.000	0.312	0.004	Y	NA
5672144	5672145	Spy49_0692	Spy49_0693	mvaK2		TRUE	0.934	-13.000	0.097	1.000	N	NA
5672146	5672147	Spy49_0694c	Spy49_0695c	mvaS1	mvaS2	TRUE	0.988	-13.000	0.183	1.000	Y	NA
5672148	5672149	Spy49_0696	Spy49_0697	thyA	dyr	TRUE	0.666	80.000	0.295	1.000	N	NA
5672149	5672150	Spy49_0697	Spy49_0698	dyr		TRUE	0.849	20.000	0.030	NA		NA
5672150	5672151	Spy49_0698	Spy49_0700		clpX	TRUE	0.332	101.000	0.012	NA		NA
5672151	5672152	Spy49_0700	Spy49_0701	clpX	engB	TRUE	0.911	10.000	0.043	1.000		NA
5672152	5672153	Spy49_0701	Spy49_0702	engB		FALSE	0.175	148.000	0.004	NA		NA
5672155	5672156	Spy49_0704	Spy49_0705	rpiA	deoB	TRUE	0.704	77.000	0.018	1.000	Y	NA
5672156	5672157	Spy49_0705	Spy49_0706	deoB	arsC	TRUE	0.826	19.000	0.108	1.000	N	NA
5672157	5672158	Spy49_0706	Spy49_0707	arsC	punA	TRUE	0.932	-16.000	0.108	1.000	N	NA
5672158	5672159	Spy49_0707	Spy49_0708	punA	deoD2	TRUE	0.638	528.000	0.040	0.001	Y	NA
5672159	5672160	Spy49_0708	Spy49_0709	deoD2		TRUE	0.971	-7.000	0.107	NA		NA
5672162	5672163	Spy49_0711	Spy49_0712		pyrF	FALSE	0.065	277.000	0.000	NA		NA
5672163	5672164	Spy49_0712	Spy49_0713	pyrF	pyrE	TRUE	0.856	58.000	0.133	1.000	Y	NA
5672164	5672165	Spy49_0713	Spy49_0714	pyrE	amiC	FALSE	0.037	197.000	0.000	1.000	N	NA
5672165	5672166	Spy49_0714	Spy49_0715	amiC		TRUE	0.343	118.000	0.182	1.000	N	NA
5672166	5672167	Spy49_0715	Spy49_0716			TRUE	0.982	29.000	0.125	0.031	Y	NA
5672167	5672168	Spy49_0716	Spy49_0717		ung	FALSE	0.147	133.000	0.025	1.000	N	NA
5672168	5672169	Spy49_0717	Spy49_0718	ung	pyrC	FALSE	0.122	132.000	0.009	1.000	N	NA
5672171	5672172	Spy49_0720	Spy49_0721	parE	parC	TRUE	0.983	91.000	0.552	0.003	Y	NA
5672172	5672173	Spy49_0721	Spy49_0722	parC	bcaT	FALSE	0.219	123.000	0.086	1.000	N	NA
5672173	5672174	Spy49_0722	Spy49_0723	bcaT		TRUE	0.669	64.000	0.095	NA		NA
5672174	5672175	Spy49_0723	Spy49_tRNAtyr2			TRUE	0.450	61.000	0.000	NA		NA
5672175	5672176	Spy49_tRNAtyr2	Spy49_tRNAgln2			TRUE	0.492	52.000	0.000	NA		NA
5672176	5672177	Spy49_tRNAgln2	Spy49_0724		rpsA	FALSE	0.152	127.000	0.000	NA		NA
5672177	5672178	Spy49_0724	Spy49_tRNAarg5	rpsA		FALSE	0.188	113.000	0.000	NA		NA
5672180	5672181	Spy49_0726	Spy49_0727			FALSE	0.056	311.000	0.000	NA		NA
5672181	5672182	Spy49_0727	Spy49_0728			FALSE	0.147	250.000	0.056	NA		NA
5672184	5672185	Spy49_0730	Spy49_0731	miaA	hflX	TRUE	0.471	73.000	0.027	1.000		NA
5672185	5672186	Spy49_0731	Spy49_0732	hflX		TRUE	0.956	-7.000	0.014	NA		NA
5672186	5672187	Spy49_0732	Spy49_0733			TRUE	0.885	15.000	0.022	NA		NA
5672187	5672188	Spy49_0733	Spy49_0734			FALSE	0.201	160.000	0.074	1.000		NA
5672188	5672189	Spy49_0734	Spy49_0735		recJ	TRUE	0.951	-3.000	0.016	1.000		NA
5672189	5672190	Spy49_0735	Spy49_0736	recJ	apt	FALSE	0.201	150.000	0.128	1.000	N	NA
5672190	5672191	Spy49_0736	Spy49_0737	apt	dnaD	TRUE	0.335	81.000	0.005	NA	N	NA
5672191	5672192	Spy49_0737	Spy49_0738	dnaD	nth	TRUE	0.985	-3.000	0.007	NA	Y	NA
5672192	5672193	Spy49_0738	Spy49_0739	nth		TRUE	0.487	72.000	0.006	NA		NA
5672193	5672194	Spy49_0739	Spy49_0740			TRUE	0.984	-10.000	0.283	NA		NA
5672194	5672195	Spy49_0740	Spy49_0741			TRUE	0.724	40.000	0.021	NA		NA
5672195	5672196	Spy49_0741	Spy49_0742		rmlA	TRUE	0.631	39.000	0.059	1.000	N	NA
5672196	5672197	Spy49_0742	Spy49_0744	rmlA	rmlC	TRUE	0.990	0.000	0.149	1.000	Y	NA
5672197	5672198	Spy49_0744	Spy49_0745	rmlC	rmlB	TRUE	0.550	244.000	0.350	1.000	Y	NA
5672199	5672200	Spy49_0746c	Spy49_0747c			FALSE	0.149	128.000	0.000	NA		NA
5672200	5672201	Spy49_0747c	Spy49_0748c			TRUE	0.831	12.000	0.000	NA		NA
5672201	5672202	Spy49_0748c	Spy49_0749c			TRUE	0.997	3.000	1.000	NA		NA
5672205	5672206	Spy49_0752	Spy49_0753			TRUE	0.801	79.000	0.375	NA		NA
5672206	5672207	Spy49_0753	Spy49_0754			TRUE	0.994	2.000	0.667	NA		NA
5672207	5672208	Spy49_0754	Spy49_0755			TRUE	0.997	-7.000	1.000	NA		NA
5672208	5672209	Spy49_0755	Spy49_0756			TRUE	0.995	-3.000	0.667	NA		NA
5672209	5672210	Spy49_0756	Spy49_0757			FALSE	0.125	146.000	0.000	NA		NA
5672210	5672211	Spy49_0757	Spy49_0759			TRUE	0.918	88.000	1.000	NA		NA
5672211	5672212	Spy49_0759	Spy49_0760			TRUE	0.977	0.000	0.143	NA		NA
5672212	5672213	Spy49_0760	Spy49_0761			TRUE	0.983	15.000	0.643	NA		NA
5672213	5672214	Spy49_0761	Spy49_0762			TRUE	0.869	43.000	0.250	NA		NA
5672214	5672215	Spy49_0762	Spy49_0763			TRUE	0.961	5.000	0.111	NA		NA
5672215	5672216	Spy49_0763	Spy49_0764			FALSE	0.047	368.000	0.000	NA		NA
5672216	5672217	Spy49_0764	Spy49_0765			TRUE	0.988	-3.000	0.286	NA		NA
5672217	5672218	Spy49_0765	Spy49_0766			FALSE	0.114	164.000	0.000	NA		NA
5672218	5672219	Spy49_0766	Spy49_0767			FALSE	0.138	133.000	0.000	NA		NA
5672219	5672220	Spy49_0767	Spy49_0768			TRUE	0.650	72.000	0.176	1.000		NA
5672220	5672221	Spy49_0768	Spy49_0769			TRUE	0.996	-10.000	0.176	0.003		NA
5672221	5672222	Spy49_0769	Spy49_0770			TRUE	0.970	16.000	0.429	NA		NA
5672222	5672223	Spy49_0770	Spy49_0771			TRUE	0.973	-34.000	0.250	NA		NA
5672223	5672224	Spy49_0771	Spy49_0772			FALSE	0.083	221.000	0.000	NA		NA
5672224	5672225	Spy49_0772	Spy49_0773			TRUE	0.751	43.000	0.077	NA		NA
5672225	5672226	Spy49_0773	Spy49_0774			TRUE	0.949	13.000	0.192	NA		NA
5672226	5672227	Spy49_0774	Spy49_0775			TRUE	0.982	12.000	0.500	NA		NA
5672227	5672228	Spy49_0775	Spy49_0776			TRUE	0.989	11.000	0.667	NA		NA
5672228	5672229	Spy49_0776	Spy49_0777			TRUE	0.996	-3.000	0.750	NA		NA
5672229	5672230	Spy49_0777	Spy49_0778			TRUE	0.995	4.000	0.800	NA		NA
5672230	5672231	Spy49_0778	Spy49_0779			TRUE	0.913	12.000	0.041	NA		NA
5672231	5672232	Spy49_0779	Spy49_0780			TRUE	0.364	107.000	0.062	NA		NA
5672232	5672233	Spy49_0780	Spy49_0781			TRUE	0.732	75.000	0.235	NA		NA
5672233	5672234	Spy49_0781	Spy49_0782			TRUE	0.971	15.000	0.400	NA		NA
5672234	5672235	Spy49_0782	Spy49_0783			TRUE	0.977	12.000	0.400	NA		NA
5672235	5672236	Spy49_0783	Spy49_0784			TRUE	0.863	10.000	0.000	NA		NA
5672236	5672237	Spy49_0784	Spy49_0785			TRUE	0.931	-3.000	0.000	NA		NA
5672237	5672238	Spy49_0785	Spy49_0786			TRUE	0.831	12.000	0.000	NA		NA
5672238	5672239	Spy49_0786	Spy49_0788			TRUE	0.909	3.000	0.000	NA		NA
5672239	5672240	Spy49_0788	Spy49_0789			TRUE	0.863	10.000	0.000	NA		NA
5672240	5672241	Spy49_0789	Spy49_0790			FALSE	0.173	118.000	0.000	NA		NA
5672241	5672242	Spy49_0790	Spy49_0791			FALSE	0.114	166.000	0.000	NA		NA
5672242	5672243	Spy49_0791	Spy49_0792		speH	FALSE	0.091	206.000	0.000	NA		NA
5672243	5672244	Spy49_0792	Spy49_0793	speH	mutX	FALSE	0.024	604.000	0.000	1.000		NA
5672244	5672245	Spy49_0793	Spy49_0794	mutX		TRUE	0.680	58.000	0.074	NA		NA
5672245	5672246	Spy49_0794	Spy49_0795			TRUE	0.986	-10.000	0.324	NA		NA
5672248	5672249	Spy49_0797	Spy49_0798			TRUE	0.863	-49.000	0.000	NA		NA
5672249	5672250	Spy49_0798	Spy49_0799			FALSE	0.108	176.000	0.000	NA		NA
5672250	5672251	Spy49_0799	Spy49_0800			TRUE	0.997	-3.000	0.895	1.000		NA
5672251	5672252	Spy49_0800	Spy49_0801			FALSE	0.135	204.000	0.026	1.000		NA
5672252	5672253	Spy49_0801	Spy49_0803		estA	TRUE	0.343	133.000	0.143	NA		NA
5672253	5672254	Spy49_0803	Spy49_0804	estA		TRUE	0.862	30.000	0.150	NA		NA
5672254	5672255	Spy49_0804	Spy49_0805			TRUE	0.698	46.000	0.029	NA		NA
5672255	5672256	Spy49_0805	Spy49_0807		acoA	FALSE	0.046	273.000	0.000	1.000		NA
5672256	5672257	Spy49_0807	Spy49_0808	acoA	acoB	TRUE	0.996	56.000	0.769	0.001	Y	NA
5672257	5672258	Spy49_0808	Spy49_0809	acoB	acoC	TRUE	0.712	185.000	0.077	0.045	Y	NA
5672258	5672259	Spy49_0809	Spy49_0810	acoC	acoL	FALSE	0.142	327.000	0.000	1.000	Y	NA
5672262	5672263	Spy49_0813c	Spy49_0814c	cobQ	murC2	TRUE	0.996	0.000	0.796	1.000		NA
5672264	5672265	Spy49_0815	Spy49_0816			TRUE	0.994	-3.000	0.502	NA		NA
5672265	5672266	Spy49_0816	Spy49_0817			TRUE	0.761	54.000	0.150	NA		NA
5672266	5672267	Spy49_0817	Spy49_0818			FALSE	0.218	123.000	0.003	NA		NA
5672267	5672268	Spy49_0818	Spy49_0819		hemN	TRUE	0.964	-3.000	0.021	NA		NA
5672268	5672269	Spy49_0819	Spy49_0820	hemN		TRUE	0.887	10.000	0.060	1.000	N	NA
5672269	5672270	Spy49_0820	Spy49_0821			TRUE	0.940	0.000	0.055	1.000	N	NA
5672270	5672271	Spy49_0821	Spy49_0822			TRUE	0.990	-3.000	0.330	NA		NA
5672271	5672272	Spy49_0822	Spy49_0823			FALSE	0.039	479.000	0.000	NA		NA
5672272	5672273	Spy49_0823	Spy49_0825			TRUE	0.994	0.000	0.546	NA		NA
5672273	5672274	Spy49_0825	Spy49_0826			TRUE	0.997	-3.000	0.876	NA		NA
5672274	5672275	Spy49_0826	Spy49_0827			TRUE	0.983	-10.000	0.253	NA		NA
5672275	5672276	Spy49_0827	Spy49_0828			FALSE	0.032	777.000	0.000	NA		NA
11449984	5672271		Spy49_0822			FALSE	NA	6547.000	0.000	NA		NA
11592347	5672271		Spy49_0822			FALSE	NA	6547.000	0.000	NA		NA
11734739	5672271		Spy49_0822			FALSE	NA	6547.000	0.000	NA		NA
11449985	5672271		Spy49_0822			FALSE	NA	6583.000	0.000	NA		NA
11592348	5672271		Spy49_0822			FALSE	NA	6583.000	0.000	NA		NA
11734740	5672271		Spy49_0822			FALSE	NA	6583.000	0.000	NA		NA
11449986	5672271		Spy49_0822			FALSE	NA	6613.000	0.000	NA		NA
11592349	5672271		Spy49_0822			FALSE	NA	6613.000	0.000	NA		NA
11734741	5672271		Spy49_0822			FALSE	NA	6613.000	0.000	NA		NA
11449987	5672271		Spy49_0822			FALSE	NA	6649.000	0.000	NA		NA
11592350	5672271		Spy49_0822			FALSE	NA	6649.000	0.000	NA		NA
11734742	5672271		Spy49_0822			FALSE	NA	6649.000	0.000	NA		NA
11449988	5672271		Spy49_0822			FALSE	NA	6680.000	0.000	NA		NA
11592351	5672271		Spy49_0822			FALSE	NA	6680.000	0.000	NA		NA
11734743	5672271		Spy49_0822			FALSE	NA	6680.000	0.000	NA		NA
11449989	5672271		Spy49_0822			FALSE	NA	6716.000	0.000	NA		NA
11592352	5672271		Spy49_0822			FALSE	NA	6716.000	0.000	NA		NA
11734744	5672271		Spy49_0822			FALSE	NA	6716.000	0.000	NA		NA
11449990	5672271		Spy49_0822			FALSE	NA	6746.000	0.000	NA		NA
11592353	5672271		Spy49_0822			FALSE	NA	6746.000	0.000	NA		NA
11734745	5672271		Spy49_0822			FALSE	NA	6746.000	0.000	NA		NA
11449991	5672271		Spy49_0822			FALSE	NA	6782.000	0.000	NA		NA
11592354	5672271		Spy49_0822			FALSE	NA	6782.000	0.000	NA		NA
11734746	5672271		Spy49_0822			FALSE	NA	6782.000	0.000	NA		NA
11449992	5672271		Spy49_0822			FALSE	NA	6812.000	0.000	NA		NA
11592355	5672271		Spy49_0822			FALSE	NA	6812.000	0.000	NA		NA
11734747	5672271		Spy49_0822			FALSE	NA	6812.000	0.000	NA		NA
5672276	5672277	Spy49_0828	Spy49_0829		lepA-2	FALSE	0.234	101.000	0.003	1.000		NA
5672277	5672278	Spy49_0829	Spy49_0830	lepA-2	sclB	FALSE	0.044	283.000	0.000	1.000		NA
5672278	5672279	Spy49_0830	Spy49_0831	sclB	csrA	FALSE	0.070	185.000	0.000	1.000		NA
5672279	5672280	Spy49_0831	Spy49_0832	csrA		FALSE	0.145	130.000	0.000	NA		NA
5672280	5672281	Spy49_0832	Spy49_0833			FALSE	0.091	207.000	0.000	NA		NA
5672281	5672282	Spy49_0833	Spy49_0834			TRUE	0.997	27.000	0.786	0.016	Y	NA
5672282	5672283	Spy49_0834	Spy49_0835			TRUE	0.983	93.000	0.778	0.024	Y	NA
5672283	5672284	Spy49_0835	Spy49_0836			TRUE	1.000	-3.000	0.778	0.024	Y	NA
5672284	5672285	Spy49_0836	Spy49_0837			TRUE	0.700	125.000	0.222	0.051	N	NA
5672285	5672286	Spy49_0837	Spy49_0839			TRUE	0.999	4.000	0.500	0.012	Y	NA
5672286	5672287	Spy49_0839	Spy49_0840			TRUE	0.991	-6.000	0.571	1.000	N	NA
5672287	5672288	Spy49_0840	Spy49_0841			FALSE	0.074	116.000	0.000	1.000	N	NA
5672288	5672289	Spy49_0841	Spy49_0842		uvrC	FALSE	0.095	101.000	0.000	1.000	N	NA
5672289	5672290	Spy49_0842	Spy49_0843	uvrC		FALSE	0.074	186.000	0.004	1.000	N	NA
5672290	5672291	Spy49_0843	Spy49_0844			TRUE	0.314	125.000	0.179	1.000	N	NA
5672293	5672294	Spy49_0846	Spy49_0847	rplJ		TRUE	0.985	65.000	0.884	0.028		NA
5672294	5672295	Spy49_0847	Spy49_0848		rplL	TRUE	0.807	75.000	0.002	0.028		NA
5672295	5672296	Spy49_0848	Spy49_0849	rplL	dacA1	FALSE	0.056	227.000	0.000	1.000		NA
5672298	5672299	Spy49_0851	Spy49_0852	folC1	folE	TRUE	0.891	35.000	0.057	1.000	Y	NA
5672299	5672300	Spy49_0852	Spy49_0853	folE	folP	TRUE	0.976	9.000	0.073	1.000	Y	NA
5672300	5672301	Spy49_0853	Spy49_0854	folP	folQ	TRUE	0.979	7.000	0.094	1.000	Y	NA
5672301	5672302	Spy49_0854	Spy49_0855	folQ	folK	TRUE	0.990	-3.000	0.142	1.000	Y	NA
5672302	5672303	Spy49_0855	Spy49_0856	folK	murB	FALSE	0.109	150.000	0.010	1.000	N	NA
5672303	5672304	Spy49_0856	Spy49_0857	murB	potA	TRUE	0.567	46.000	0.041	1.000	N	NA
5672304	5672305	Spy49_0857	Spy49_0858	potA	potB	TRUE	0.999	-16.000	0.928	0.029	Y	NA
5672305	5672306	Spy49_0858	Spy49_0859	potB	potC	TRUE	0.999	-3.000	0.492	0.029	Y	NA
5672306	5672307	Spy49_0859	Spy49_0860	potC	potD	TRUE	0.998	-7.000	0.253	0.029	Y	NA
5672308	5672309	Spy49_0861c	Spy49_0862c			TRUE	0.984	-19.000	0.154	1.000	Y	NA
5672310	5672311	Spy49_0863	Spy49_0864	malP		TRUE	0.970	32.000	0.432	1.000	Y	NA
5672313	5672314	Spy49_0866	Spy49_0867			FALSE	0.074	178.000	0.000	1.000		NA
5672314	5672315	Spy49_0867	Spy49_0868			FALSE	0.148	163.000	0.071	1.000	N	NA
5672315	5672316	Spy49_0868	Spy49_0869			FALSE	0.215	180.000	0.071	NA		NA
5672316	5672317	Spy49_0869	Spy49_0870		radC	TRUE	0.589	67.000	0.046	NA		NA
5672318	5672319	Spy49_0871c	Spy49_0872c			TRUE	0.989	10.000	0.714	1.000		NA
5672319	5672320	Spy49_0872c	Spy49_0873c			FALSE	0.164	252.000	0.083	NA		NA
5672320	5672321	Spy49_0873c	Spy49_0874c			TRUE	0.974	-10.000	0.166	NA		NA
5672321	5672322	Spy49_0874c	Spy49_0875c		prs	TRUE	0.988	-3.000	0.089	1.000	Y	NA
5672322	5672323	Spy49_0875c	Spy49_0876c	prs		FALSE	0.281	140.000	0.145	1.000		NA
5672324	5672325	Spy49_0877	Spy49_0878			TRUE	0.991	-25.000	0.725	1.000		NA
5672325	5672326	Spy49_0878	Spy49_0879		rluD	TRUE	0.965	-3.000	0.150	1.000	N	NA
5672326	5672327	Spy49_0879	Spy49_0880	rluD	pta	TRUE	0.923	4.000	0.067	1.000	N	NA
5672327	5672328	Spy49_0880	Spy49_0881	pta		TRUE	0.605	126.000	0.031	0.044		NA
5672330	5672331	Spy49_0883	Spy49_0884	proV	proX	TRUE	0.985	-7.000	0.382	1.000	N	NA
5672331	5672332	Spy49_0884	Spy49_0885	proX		FALSE	0.025	278.000	0.000	1.000	N	NA
5672334	5672335	Spy49_0887	Spy49_0888	xpt		TRUE	0.985	0.000	0.046	1.000	Y	NA
5672336	5672337	Spy49_0891c	Spy49_0892c			TRUE	0.761	53.000	0.189	1.000		NA
5672338	5672339	Spy49_0893	Spy49_0894	tdk	prfA	TRUE	0.665	35.000	0.062	1.000	N	NA
5672339	5672340	Spy49_0894	Spy49_0895	prfA	hemK	TRUE	0.987	0.000	0.084	1.000	Y	NA
5672340	5672341	Spy49_0895	Spy49_0896	hemK		TRUE	0.980	-16.000	0.029	NA	Y	NA
5672341	5672342	Spy49_0896	Spy49_0897			TRUE	0.847	18.000	0.012	NA		NA
5672342	5672343	Spy49_0897	Spy49_0898			TRUE	0.946	-10.000	0.056	1.000		NA
5672343	5672344	Spy49_0898	Spy49_0899			TRUE	0.886	7.000	0.000	NA		NA
5672344	5672345	Spy49_0899	Spy49_0900			TRUE	0.924	1.000	0.000	NA		NA
5672345	5672346	Spy49_0900	Spy49_0901			TRUE	0.929	10.000	0.035	NA		NA
5672346	5672347	Spy49_0901	Spy49_0902			TRUE	1.000	-3.000	0.895	0.007	Y	NA
5672347	5672348	Spy49_0902	Spy49_0903		nox1	FALSE	0.050	253.000	0.000	1.000		NA
5672350	5672351	Spy49_0905	Spy49_0906	gyrA		TRUE	0.779	20.000	0.013	NA	N	NA
5672351	5672352	Spy49_0906	Spy49_0907			TRUE	0.429	80.000	0.039	NA	N	NA
5672352	5672353	Spy49_0907	Spy49_0908			FALSE	0.035	649.000	0.000	NA		NA
5672354	5672355	Spy49_0909c	Spy49_0910c		hlyIII	FALSE	0.161	252.000	0.135	1.000		NA
5672355	5672356	Spy49_0910c	Spy49_0911c	hlyIII		TRUE	0.973	-3.000	0.146	1.000		NA
5672357	5672358	Spy49_0912	Spy49_0913		rnh	TRUE	0.965	-10.000	0.148	1.000		NA
5672358	5672359	Spy49_0913	Spy49_0914	rnh	smf	TRUE	0.781	65.000	0.037	1.000	Y	NA
5672359	5672360	Spy49_0914	Spy49_0915	smf	topA	TRUE	0.729	107.000	0.238	1.000	Y	NA
5672361	5672362	Spy49_0916c	Spy49_0917c			TRUE	0.886	7.000	0.000	NA		NA
5672363	5672364	Spy49_0918	Spy49_0919			TRUE	0.933	15.000	0.158	NA		NA
5672364	5672365	Spy49_0919	Spy49_0920			TRUE	0.368	105.000	0.056	NA		NA
5672365	5672366	Spy49_0920	Spy49_0921			TRUE	0.985	-7.000	0.250	NA		NA
5672366	5672367	Spy49_0921	Spy49_0922		gid	FALSE	0.186	151.000	0.008	NA		NA
5672367	5672368	Spy49_0922	Spy49_0923	gid		FALSE	0.083	177.000	0.005	1.000	N	NA
5672368	5672369	Spy49_0923	Spy49_0924			TRUE	0.869	43.000	0.250	NA		NA
5672369	5672370	Spy49_0924	Spy49_0925			TRUE	0.993	0.000	0.500	NA		NA
5672370	5672371	Spy49_0925	Spy49_0926			TRUE	0.888	10.000	0.062	1.000	N	NA
5672372	5672373	Spy49_0927c	Spy49_0928c	citG		TRUE	0.993	-7.000	0.700	1.000	N	NA
5672373	5672374	Spy49_0928c	Spy49_0929c			TRUE	0.432	158.000	0.400	1.000	N	NA
5672375	5672376	Spy49_0930	Spy49_0933			FALSE	0.038	489.000	0.000	NA		NA
5672376	5672377	Spy49_0933	Spy49_0934		citD	FALSE	0.239	188.000	0.000	1.000	Y	NA
5672377	5672378	Spy49_0934	Spy49_0936	citD	citE	TRUE	0.997	-12.000	0.284	0.002	N	NA
5672378	5672379	Spy49_0936	Spy49_0937	citE	citF	TRUE	0.995	3.000	0.119	0.001	N	NA
5672379	5672380	Spy49_0937	Spy49_0938	citF	citX	TRUE	0.918	-103.000	0.138	1.000	N	NA
5672380	5672381	Spy49_0938	Spy49_0939	citX	oadA	TRUE	0.872	15.000	0.123	1.000	N	NA
5672382	5672383	Spy49_0940c	Spy49_0942c	citC		FALSE	0.099	187.000	0.000	NA		NA
5672383	5672384	Spy49_0942c	Spy49_0943c			FALSE	0.033	694.000	0.000	NA		NA
5672386	5672387	Spy49_0945c	Spy49_0946c	ffh		TRUE	0.914	15.000	0.151	1.000		NA
5672387	5672388	Spy49_0946c	Spy49_0947c			TRUE	0.760	89.000	0.032	0.037		NA
5672388	5672389	Spy49_0947c	Spy49_0948c			TRUE	0.493	83.000	0.057	NA		NA
5672391	5672392	Spy49_0951c	Spy49_0952c	murM2		FALSE	0.034	355.000	0.000	1.000		NA
5672392	5672393	Spy49_0952c	Spy49_0953c			TRUE	0.328	113.000	0.040	NA		NA
5672393	5672394	Spy49_0953c	Spy49_0954c		pdxK	TRUE	0.960	-22.000	0.142	NA		NA
5672396	5672397	Spy49_0957c	Spy49_0958c			FALSE	0.038	322.000	0.000	1.000		NA
5672397	5672398	Spy49_0958c	Spy49_0959c		fhs1	TRUE	0.391	85.000	0.094	1.000	N	NA
5672398	5672399	Spy49_0959c	Spy49_0960c	fhs1	lplA	TRUE	0.324	128.000	0.200	1.000	N	NA
5672399	5672400	Spy49_0960c	Spy49_0961c	lplA		TRUE	0.790	47.000	0.250	1.000	N	NA
5672400	5672401	Spy49_0961c	Spy49_0962c			TRUE	0.986	-7.000	0.286	NA		NA
5672401	5672402	Spy49_0962c	Spy49_0963c			TRUE	0.971	-7.000	0.107	NA		NA
5672402	5672403	Spy49_0963c	Spy49_0964c			TRUE	0.931	42.000	0.571	NA	N	NA
5672403	5672404	Spy49_0964c	Spy49_0965c			TRUE	0.990	-3.000	0.100	NA	Y	NA
5672404	5672405	Spy49_0965c	Spy49_0966c			TRUE	0.933	-3.000	0.019	1.000	N	NA
5672406	5672407	Spy49_0967	Spy49_0968	dpfB	dfp	TRUE	0.926	-7.000	0.002	1.000		NA
5672407	5672408	Spy49_0968	Spy49_0969	dfp		TRUE	0.623	59.000	0.019	NA		NA
5672408	5672409	Spy49_0969	Spy49_0970		pgmA	FALSE	0.245	176.000	0.098	NA		NA
5672410	5672411	Spy49_0971c	Spy49_0972c			TRUE	0.999	2.000	0.720	0.029		NA
5672411	5672412	Spy49_0972c	Spy49_0973c			TRUE	0.990	-7.000	0.438	1.000		NA
5672412	5672413	Spy49_0973c	Spy49_0974c			FALSE	0.196	139.000	0.036	1.000		NA
5672413	5672414	Spy49_0974c	Spy49_0975c		cdd	TRUE	0.632	94.000	0.300	1.000		NA
5672414	5672415	Spy49_0975c	Spy49_0976c	cdd		FALSE	0.013	653.000	0.000	1.000	N	NA
5672416	5672417	Spy49_0977	Spy49_0978	coaA	prsT	TRUE	0.378	69.000	0.014	1.000	N	NA
5672418	5672419	Spy49_0979c	Spy49_0980c	ciaH	ciaR	TRUE	0.997	-7.000	0.606	1.000	Y	NA
5672419	5672420	Spy49_0980c	Spy49_0981c	ciaR	pepN	FALSE	0.063	347.000	0.061	1.000	N	NA
5672420	5672421	Spy49_0981c	Spy49_0982c	pepN	phoU	FALSE	0.149	205.000	0.067	NA	N	NA
5672421	5672422	Spy49_0982c	Spy49_0983c	phoU	pstB	TRUE	0.931	69.000	0.413	NA	Y	NA
5672422	5672423	Spy49_0983c	Spy49_0984c	pstB	pstB2	TRUE	0.999	13.000	0.542	0.001	Y	NA
5672423	5672424	Spy49_0984c	Spy49_0985c	pstB2	pstA	TRUE	0.998	16.000	0.490	0.003	Y	NA
5672424	5672425	Spy49_0985c	Spy49_0986	pstA	pstC	TRUE	1.000	-10.000	0.907	0.003	Y	NA
5672425	5672426	Spy49_0986	Spy49_0987c	pstC	pstS	TRUE	0.981	11.000	0.206	1.000	Y	NA
5672426	5672427	Spy49_0987c	Spy49_0988c	pstS		TRUE	0.439	139.000	0.303	NA	N	NA
5672427	5672428	Spy49_0988c	Spy49_0989c			TRUE	0.975	3.000	0.229	NA	N	NA
5672428	5672429	Spy49_0989c	Spy49_0990c			TRUE	0.987	-10.000	0.337	NA		NA
5672429	5672430	Spy49_0990c	Spy49_0991c			TRUE	0.977	2.000	0.169	NA		NA
5672430	5672431	Spy49_0991c	Spy49_0992c			TRUE	0.551	43.000	0.017	1.000	N	NA
5672431	5672432	Spy49_0992c	Spy49_0993c		truB	TRUE	0.978	-10.000	0.308	1.000	N	NA
5672432	5672433	Spy49_0993c	Spy49_0994c	truB		FALSE	0.285	116.000	0.014	NA		NA
5672433	5672434	Spy49_0994c	Spy49_0995c			TRUE	0.394	97.000	0.045	NA		NA
5672434	5672435	Spy49_0995c	Spy49_0996c			TRUE	0.921	11.000	0.045	NA		NA
5672435	5672436	Spy49_0996c	Spy49_0997c			TRUE	0.448	92.000	0.121	1.000		NA
5672436	5672437	Spy49_0997c	Spy49_0998c			TRUE	0.986	15.000	0.438	1.000	Y	NA
5672439	5672440	Spy49_1000c	Spy49_1001c			TRUE	0.399	163.000	0.238	NA		NA
5672440	5672441	Spy49_1001c	Spy49_1002c			TRUE	0.987	11.000	0.600	NA		NA
5672441	5672442	Spy49_1002c	Spy49_1003c			TRUE	0.948	41.000	0.600	NA		NA
5672442	5672443	Spy49_1003c	Spy49_1004c			TRUE	0.909	13.000	0.060	NA		NA
5672443	5672444	Spy49_1004c	Spy49_1005c			TRUE	0.947	11.000	0.143	NA		NA
5672444	5672445	Spy49_1005c	Spy49_1006c			TRUE	0.862	61.000	0.357	NA		NA
5672445	5672446	Spy49_1006c	Spy49_1007c		pcrA	FALSE	0.033	363.000	0.000	1.000		NA
5672447	5672448	Spy49_1008	Spy49_1009			TRUE	0.554	120.000	0.060	0.070	N	NA
5672449	5672450	Spy49_1010c	Spy49_1011c	cfa		FALSE	0.047	370.000	0.000	NA		NA
5672450	5672451	Spy49_1011c	Spy49_1012c			TRUE	0.964	16.000	0.154	1.000	Y	NA
5672451	5672452	Spy49_1012c	Spy49_1013c			TRUE	0.977	10.000	0.130	1.000	Y	NA
5672452	5672453	Spy49_1013c	Spy49_1014c			FALSE	0.204	107.000	0.018	1.000	N	NA
5672453	5672454	Spy49_1014c	Spy49_1015c		glmS	FALSE	0.080	196.000	0.008	1.000	N	NA
5672454	5672455	Spy49_1015c	Spy49_1016c	glmS	sipC	FALSE	0.096	176.000	0.011	1.000	N	NA
5672455	5672456	Spy49_1016c	Spy49_1017c	sipC	pyk	FALSE	0.110	218.000	0.072	1.000	N	NA
5672456	5672457	Spy49_1017c	Spy49_1018c	pyk	pfk	TRUE	0.983	63.000	0.261	0.006	Y	NA
5672457	5672458	Spy49_1018c	Spy49_1019c	pfk	dnaE	TRUE	0.432	80.000	0.098	1.000	N	NA
5672459	5672460	Spy49_1020	Spy49_1021			TRUE	0.987	0.000	0.412	1.000	N	NA
5672460	5672461	Spy49_1021	Spy49_1022			TRUE	0.984	10.000	0.471	NA		NA
5672463	5672464	Spy49_tmRNA	Spy49_1024	tmRNA		FALSE	0.058	301.000	0.000	NA		NA
5672465	5672466	Spy49_1025c	Spy49_1026c	glgP	malQ	TRUE	0.990	35.000	0.289	0.018	Y	NA
5672466	5672467	Spy49_1026c	Spy49_1027c	malQ	malR	TRUE	0.643	115.000	0.538	1.000	N	NA
5672468	5672469	Spy49_1028	Spy49_1029	malE	malF	TRUE	0.731	274.000	0.690	NA	Y	NA
5672469	5672470	Spy49_1029	Spy49_1030	malF	malG	TRUE	1.000	0.000	0.793	0.029	Y	NA
5672470	5672471	Spy49_1030	Spy49_1819c	malG		FALSE	0.041	181.000	0.000	1.000	N	NA
5672471	5672472	Spy49_1819c	Spy49_1032			FALSE	0.080	225.000	0.000	NA		NA
5672473	5672474	Spy49_1033c	Spy49_1034c		dltD	TRUE	0.739	31.000	0.042	NA	N	NA
5672474	5672475	Spy49_1034c	Spy49_1035c	dltD	dltC	TRUE	0.991	-7.000	0.409	NA		NA
5672475	5672476	Spy49_1035c	Spy49_1036c	dltC	dltB	TRUE	0.963	18.000	0.387	NA		NA
5672476	5672477	Spy49_1036c	Spy49_1037c	dltB	dltA	TRUE	0.990	-3.000	0.435	NA	N	NA
5672477	5672478	Spy49_1037c	Spy49_1038c	dltA		TRUE	0.984	12.000	0.549	NA		NA
5672478	5672479	Spy49_1038c	Spy49_1039c		uvrB	FALSE	0.069	263.000	0.000	NA		NA
5672480	5672481	Spy49_1040	Spy49_1041	glnP	glnQ	TRUE	0.995	0.000	0.326	1.000	Y	NA
5672482	5672483	Spy49_1042c	Spy49_1043c			TRUE	0.982	-3.000	0.182	NA		NA
5672483	5672484	Spy49_1043c	Spy49_1044c			TRUE	0.401	178.000	0.273	NA		NA
5672484	5672485	Spy49_1044c	Spy49_1045c			TRUE	0.993	-3.000	0.500	NA		NA
5672485	5672486	Spy49_1045c	Spy49_1046c			TRUE	0.999	3.000	0.500	0.015	Y	NA
5672486	5672487	Spy49_1046c	Spy49_1047c			TRUE	0.959	23.000	0.064	0.015	N	NA
5672487	5672488	Spy49_1047c	Spy49_1048c			TRUE	0.315	106.000	0.064	1.000		NA
5672488	5672489	Spy49_1048c	Spy49_1049c			TRUE	0.985	9.000	0.500	1.000		NA
5672491	5672492	Spy49_1051c	Spy49_1053c			TRUE	0.519	69.000	0.009	NA		NA
5672493	5672494	Spy49_1054	Spy49_1055			TRUE	0.631	140.000	0.000	0.058	Y	NA
5672494	5672495	Spy49_1055	Spy49_1056			TRUE	0.820	398.000	0.667	0.058	Y	NA
5672495	5672496	Spy49_1056	Spy49_1057			TRUE	0.999	3.000	0.667	0.058	Y	NA
5672496	5672497	Spy49_1057	Spy49_1059			FALSE	0.019	1397.000	0.000	NA	N	NA
5672497	5672498	Spy49_1059	Spy49_1060			FALSE	0.120	157.000	0.000	NA		NA
5672498	5672499	Spy49_1060	Spy49_1062			FALSE	0.126	144.000	0.000	NA		NA
5672504	5672505	Spy49_1070c	Spy49_1071c			FALSE	0.114	164.000	0.000	NA		NA
5672505	5672506	Spy49_1071c	Spy49_1072c			FALSE	0.029	419.000	0.000	1.000		NA
5672506	5672507	Spy49_1072c	Spy49_1073c		psr	TRUE	0.472	82.000	0.093	NA	N	NA
5672507	5672508	Spy49_1073c	Spy49_1074c	psr	aroK	FALSE	0.176	208.000	0.111	NA	N	NA
5672508	5672509	Spy49_1074c	Spy49_1075c	aroK	aroA1	TRUE	0.981	-7.000	0.012	1.000	Y	NA
5672509	5672510	Spy49_1075c	Spy49_1076c	aroA1		FALSE	0.202	111.000	0.003	1.000		NA
5672510	5672511	Spy49_1076c	Spy49_1077c		map	TRUE	0.987	2.000	0.373	1.000		NA
5672511	5672512	Spy49_1077c	Spy49_1078c	map		TRUE	0.920	16.000	0.235	1.000	N	NA
5672512	5672513	Spy49_1078c	Spy49_1079c			TRUE	0.973	9.000	0.342	1.000	N	NA
5672513	5672514	Spy49_1079c	Spy49_1080c		grab	FALSE	0.047	267.000	0.000	1.000		NA
5672514	5672515	Spy49_1080c	Spy49_1082c	grab	murZ	FALSE	0.034	358.000	0.000	1.000		NA
5672515	5672516	Spy49_1082c	Spy49_1083c	murZ	metK	FALSE	0.117	174.000	0.026	1.000	N	NA
5672516	5672517	Spy49_1083c	Spy49_1084c	metK	inlA	FALSE	0.025	537.000	0.000	1.000		NA
5672519	5672520	Spy49_1086c	Spy49_1087c		dnaX	TRUE	0.420	96.000	0.067	NA		NA
5672520	5672521	Spy49_1087c	Spy49_1088c	dnaX		TRUE	0.952	0.000	0.030	NA	N	NA
5672525	5672526	Spy49_1092c	Spy49_1093c		gapN	FALSE	0.180	121.000	0.028	1.000	N	NA
5672526	5672527	Spy49_1093c	Spy49_1094c	gapN	ptsI	FALSE	0.112	185.000	0.035	1.000	N	NA
5672527	5672528	Spy49_1094c	Spy49_1095c	ptsI	ptsH	TRUE	0.998	5.000	0.240	0.014	Y	NA
5672529	5672530	Spy49_1096	Spy49_1097	nrdH	nrdE1	TRUE	0.959	20.000	0.562	1.000	N	NA
5672530	5672531	Spy49_1097	Spy49_1098	nrdE1	nrdF1	TRUE	0.887	-19.000	0.000	NA		NA
5672531	5672532	Spy49_1098	Spy49_1099	nrdF1		TRUE	0.613	35.000	0.000	NA		NA
5672532	5672533	Spy49_1099	Spy49_1100			TRUE	0.911	-25.000	0.083	1.000	N	NA
5672533	5672534	Spy49_1100	Spy49_1101			FALSE	0.054	138.000	0.000	1.000	N	NA
5672534	5672535	Spy49_1101	Spy49_1103			FALSE	0.163	433.000	0.000	0.057		NA
5672535	5672536	Spy49_1103	Spy49_1104			TRUE	0.921	40.000	0.000	0.009		NA
5672537	5672538	Spy49_1105c	Spy49_1106c			TRUE	0.877	19.000	0.077	NA		NA
5672538	5672539	Spy49_1106c	Spy49_1107c			TRUE	0.990	-3.000	0.362	NA		NA
5672539	5672540	Spy49_1107c	Spy49_1108c		alaS	FALSE	0.020	346.000	0.000	1.000	N	NA
5672540	5672541	Spy49_1108c	Spy49_1109c	alaS	prtM1	FALSE	0.017	387.000	0.000	1.000	N	NA
5672541	5672542	Spy49_1109c	Spy49_1110c	prtM1		TRUE	0.509	63.000	0.012	1.000		NA
5672542	5672543	Spy49_1110c	Spy49_1111c			TRUE	0.476	66.000	0.012	1.000		NA
5672543	5672544	Spy49_1111c	Spy49_1112c		pepB	FALSE	0.017	377.000	0.000	1.000	N	NA
5672544	5672545	Spy49_1112c	Spy49_1113c	pepB		TRUE	0.952	13.000	0.204	NA		NA
5672545	5672546	Spy49_1113c	Spy49_1114c			FALSE	0.112	297.000	0.020	NA		NA
5672546	5672547	Spy49_1114c	Spy49_1115c		nagB	FALSE	0.196	119.000	0.051	1.000	N	NA
5672548	5672549	Spy49_1116	Spy49_1117	queA		TRUE	0.921	7.000	0.004	NA		NA
5672550	5672551	Spy49_1119c	Spy49_1120c			TRUE	0.931	-3.000	0.000	NA		NA
5672551	5672552	Spy49_1120c	Spy49_1121c			TRUE	0.897	-15.000	0.000	NA		NA
5672552	5672553	Spy49_1121c	Spy49_1122c		sodM	FALSE	0.163	122.000	0.000	NA		NA
5672553	5672554	Spy49_1122c	Spy49_1123c	sodM	holA	FALSE	0.217	97.000	0.012	1.000	N	NA
5672554	5672555	Spy49_1123c	Spy49_1124c	holA	comEC	TRUE	0.641	71.000	0.163	1.000		NA
5672555	5672556	Spy49_1124c	Spy49_1126c	comEC	comE	TRUE	0.950	-19.000	0.130	1.000		NA
5672556	5672557	Spy49_1126c	Spy49_1127c	comE		FALSE	0.089	200.000	0.014	1.000	N	NA
5672558	5672559	Spy49_1128	Spy49_1129			TRUE	0.975	-10.000	0.209	1.000		NA
5672560	5672561	Spy49_1130c	Spy49_1132c	kup	deaD1	FALSE	0.126	128.000	0.007	1.000	N	NA
5672561	5672562	Spy49_1132c	Spy49_1133c	deaD1	prfC	FALSE	0.149	307.000	0.000	1.000	Y	NA
5672562	5672563	Spy49_1133c	Spy49_1135c	prfC		FALSE	0.105	248.000	0.003	NA		NA
5672563	5672564	Spy49_1135c	Spy49_1136c		murF	TRUE	0.543	80.000	0.078	NA		NA
5672564	5672565	Spy49_1136c	Spy49_1137c	murF	ddlA	TRUE	0.778	191.000	0.046	0.009	Y	NA
5672565	5672566	Spy49_1137c	Spy49_1138c	ddlA	recR	FALSE	0.198	101.000	0.010	1.000	N	NA
5672566	5672567	Spy49_1138c	Spy49_1139c	recR		TRUE	0.520	47.000	0.000	NA		NA
5672567	5672568	Spy49_1139c	Spy49_1140c		fdhC	FALSE	0.036	560.000	0.000	NA		NA
5672568	5672569	Spy49_1140c	Spy49_1141c	fdhC		TRUE	0.522	87.000	0.105	NA		NA
5672569	5672570	Spy49_1141c	Spy49_1142c			FALSE	0.270	161.000	0.107	NA		NA
5672570	5672571	Spy49_1142c	Spy49_1143c		gpmA	FALSE	0.250	107.000	0.012	1.000		NA
5672573	5672574	Spy49_1145c	Spy49_1146c		cadA	TRUE	0.532	72.000	0.018	NA		NA
5672574	5672575	Spy49_1146c	Spy49_1147c	cadA		FALSE	0.020	332.000	0.000	1.000	N	NA
5672575	5672576	Spy49_1147c	Spy49_1148c			TRUE	0.509	99.000	0.156	NA		NA
5672576	5672577	Spy49_1148c	Spy49_1149c			TRUE	0.994	-22.000	0.828	NA		NA
5672577	5672578	Spy49_1149c	Spy49_1150c			TRUE	0.982	-7.000	0.203	NA		NA
5672578	5672579	Spy49_1150c	Spy49_1151c			FALSE	0.085	216.000	0.000	NA		NA
5672579	5672580	Spy49_1151c	Spy49_1152c		recN	FALSE	0.111	172.000	0.000	NA		NA
5672580	5672581	Spy49_1152c	Spy49_1153c	recN		TRUE	0.743	21.000	0.037	1.000	N	NA
5672581	5672582	Spy49_1153c	Spy49_1154c			TRUE	0.915	-13.000	0.048	1.000	N	NA
5672582	5672583	Spy49_1154c	Spy49_1155c		fps	FALSE	0.113	200.000	0.058	1.000	N	NA
5672583	5672584	Spy49_1155c	Spy49_1156c	fps	xseB	TRUE	0.954	0.000	0.100	1.000	N	NA
5672584	5672585	Spy49_1156c	Spy49_1157c	xseB	xseA	TRUE	0.999	-22.000	0.412	0.001	Y	NA
5672585	5672586	Spy49_1157c	Spy49_1158c	xseA	folD	FALSE	0.138	153.000	0.045	1.000	N	NA
5672586	5672587	Spy49_1158c	Spy49_1159c	folD		FALSE	0.084	208.000	0.013	1.000	N	NA
5672587	5672588	Spy49_1159c	Spy49_1160c		phr	FALSE	0.078	178.000	0.004	1.000	N	NA
5672588	5672589	Spy49_1160c	Spy49_1161c	phr	gtr	FALSE	0.050	149.000	0.000	1.000	N	NA
5672589	5672590	Spy49_1161c	Spy49_1162c	gtr		TRUE	0.997	0.000	0.640	1.000	Y	NA
5672590	5672591	Spy49_1162c	Spy49_1163c			FALSE	0.277	127.000	0.044	NA		NA
5672592	5672593	Spy49_1164	Spy49_1165	clpE	mutT	FALSE	0.197	128.000	0.079	1.000	N	NA
5672593	5672594	Spy49_1165	Spy49_1166	mutT		TRUE	0.740	51.000	0.114	NA		NA
5672595	5672596	Spy49_1167c	Spy49_1168c	ileS	divIVA	FALSE	0.069	318.000	0.012	NA	N	NA
5672596	5672597	Spy49_1168c	Spy49_1169c	divIVA		TRUE	0.989	10.000	0.579	NA		NA
5672597	5672598	Spy49_1169c	Spy49_1170c			TRUE	0.985	0.000	0.287	1.000		NA
5672598	5672599	Spy49_1170c	Spy49_1171c			TRUE	0.985	5.000	0.370	NA		NA
5672599	5672600	Spy49_1171c	Spy49_1172c			TRUE	0.982	0.000	0.194	NA		NA
5672600	5672601	Spy49_1172c	Spy49_1173c		ftsZ	TRUE	0.953	3.000	0.030	NA		NA
5672601	5672602	Spy49_1173c	Spy49_1174c	ftsZ	ftsA	TRUE	0.977	24.000	0.460	1.000	Y	NA
5672602	5672603	Spy49_1174c	Spy49_1175c	ftsA	ftsQ	TRUE	0.391	211.000	0.389	NA	N	NA
5672603	5672604	Spy49_1175c	Spy49_1176c	ftsQ	murG	TRUE	0.988	1.000	0.072	NA	Y	NA
5672604	5672605	Spy49_1176c	Spy49_1177c	murG	murD	TRUE	0.986	0.000	0.060	1.000	Y	NA
5672605	5672606	Spy49_1177c	Spy49_1178c	murD		FALSE	0.076	356.000	0.006	NA		NA
5672606	5672607	Spy49_1178c	Spy49_1179c			FALSE	0.264	122.000	0.015	NA		NA
5672607	5672608	Spy49_1179c	Spy49_1180c			FALSE	0.105	183.000	0.003	NA	N	NA
5672608	5672609	Spy49_1180c	Spy49_1181c			TRUE	0.915	10.000	0.064	NA	N	NA
5672609	5672610	Spy49_1181c	Spy49_1182c			TRUE	0.989	5.000	0.496	NA		NA
5672610	5672611	Spy49_1182c	Spy49_1183c			FALSE	0.245	142.000	0.058	NA		NA
5672613	5672614	Spy49_1185c	Spy49_1186c			TRUE	0.945	4.000	0.016	NA		NA
5672614	5672615	Spy49_1186c	Spy49_1187c			FALSE	0.040	448.000	0.000	NA		NA
5672615	5672616	Spy49_1187c	Spy49_1188c			FALSE	0.016	414.000	0.000	1.000	N	NA
5672616	5672617	Spy49_1188c	Spy49_1189c		kdtB	TRUE	0.916	-13.000	0.052	1.000	N	NA
5672617	5672618	Spy49_1189c	Spy49_1190c	kdtB		TRUE	0.981	-10.000	0.367	1.000	N	NA
5672618	5672619	Spy49_1190c	Spy49_1191c		asnA	FALSE	0.131	123.000	0.006	1.000	N	NA
5672619	5672620	Spy49_1191c	Spy49_1192c	asnA	arcC	FALSE	0.146	313.000	0.000	1.000	Y	NA
5672620	5672621	Spy49_1192c	Spy49_1193c	arcC		TRUE	0.931	20.000	0.035	1.000	Y	NA
5672621	5672622	Spy49_1193c	Spy49_1194c			TRUE	0.913	17.000	0.140	NA		NA
5672622	5672623	Spy49_1194c	Spy49_1195c		arcB	FALSE	0.121	363.000	0.104	NA		NA
5672623	5672624	Spy49_1195c	Spy49_1196c	arcB		TRUE	0.821	25.000	0.104	1.000		NA
5672624	5672625	Spy49_1196c	Spy49_1197c		arcA	TRUE	0.329	100.000	0.056	1.000		NA
5672625	5672626	Spy49_1197c	Spy49_1198c	arcA		FALSE	0.025	274.000	0.000	1.000	N	NA
5672628	5672629	Spy49_1200c	Spy49_1201c			TRUE	0.875	14.000	0.009	NA		NA
5672629	5672630	Spy49_1201c	Spy49_1202c		yesM	TRUE	0.483	73.000	0.007	NA		NA
5672630	5672631	Spy49_1202c	Spy49_1203c	yesM	yesN	TRUE	0.998	-3.000	0.480	0.011		NA
5672631	5672632	Spy49_1203c	Spy49_1204c	yesN	msrA1	TRUE	0.617	88.000	0.240	1.000		NA
5672632	5672633	Spy49_1204c	Spy49_1205c	msrA1		TRUE	0.983	43.000	0.875	1.000	Y	NA
5672633	5672634	Spy49_1205c	Spy49_1206c		ccdA	TRUE	0.990	13.000	0.500	1.000	Y	NA
5672634	5672635	Spy49_1206c	Spy49_1207c	ccdA		FALSE	0.013	693.000	0.000	1.000	N	NA
11449993	5672633		Spy49_1205c			FALSE	NA	882.000	0.000	NA		NA
11592356	5672633		Spy49_1205c			FALSE	NA	882.000	0.000	NA		NA
11734748	5672633		Spy49_1205c			FALSE	NA	882.000	0.000	NA		NA
11449994	5672633		Spy49_1205c			FALSE	NA	914.000	0.000	NA		NA
11592357	5672633		Spy49_1205c			FALSE	NA	914.000	0.000	NA		NA
11734749	5672633		Spy49_1205c			FALSE	NA	914.000	0.000	NA		NA
11449995	5672633		Spy49_1205c			FALSE	NA	949.000	0.000	NA		NA
11592358	5672633		Spy49_1205c			FALSE	NA	949.000	0.000	NA		NA
11734750	5672633		Spy49_1205c			FALSE	NA	949.000	0.000	NA		NA
11449996	5672633		Spy49_1205c			FALSE	NA	981.000	0.000	NA		NA
11592359	5672633		Spy49_1205c			FALSE	NA	981.000	0.000	NA		NA
11734751	5672633		Spy49_1205c			FALSE	NA	981.000	0.000	NA		NA
11449997	5672633		Spy49_1205c			FALSE	NA	1016.000	0.000	NA		NA
11592360	5672633		Spy49_1205c			FALSE	NA	1016.000	0.000	NA		NA
11734752	5672633		Spy49_1205c			FALSE	NA	1016.000	0.000	NA		NA
11449998	5672633		Spy49_1205c			FALSE	NA	1048.000	0.000	NA		NA
11592361	5672633		Spy49_1205c			FALSE	NA	1048.000	0.000	NA		NA
11734753	5672633		Spy49_1205c			FALSE	NA	1048.000	0.000	NA		NA
11449999	5672633		Spy49_1205c			FALSE	NA	1083.000	0.000	NA		NA
11592362	5672633		Spy49_1205c			FALSE	NA	1083.000	0.000	NA		NA
11734754	5672633		Spy49_1205c			FALSE	NA	1083.000	0.000	NA		NA
11450000	5672633		Spy49_1205c			FALSE	NA	1115.000	0.000	NA		NA
11592363	5672633		Spy49_1205c			FALSE	NA	1115.000	0.000	NA		NA
11734755	5672633		Spy49_1205c			FALSE	NA	1115.000	0.000	NA		NA
11450001	5672633		Spy49_1205c			FALSE	NA	1150.000	0.000	NA		NA
11592364	5672633		Spy49_1205c			FALSE	NA	1150.000	0.000	NA		NA
11734756	5672633		Spy49_1205c			FALSE	NA	1150.000	0.000	NA		NA
11450002	5672633		Spy49_1205c			FALSE	NA	1182.000	0.000	NA		NA
11592365	5672633		Spy49_1205c			FALSE	NA	1182.000	0.000	NA		NA
11734757	5672633		Spy49_1205c			FALSE	NA	1182.000	0.000	NA		NA
11450003	5672633		Spy49_1205c			FALSE	NA	1215.000	0.000	NA		NA
11592366	5672633		Spy49_1205c			FALSE	NA	1215.000	0.000	NA		NA
11734758	5672633		Spy49_1205c			FALSE	NA	1215.000	0.000	NA		NA
5672635	5672636	Spy49_1207c	Spy49_1208c			TRUE	0.997	11.000	0.882	NA	Y	NA
5672636	5672637	Spy49_1208c	Spy49_1209c			TRUE	0.998	-3.000	0.773	NA	Y	NA
5672637	5672638	Spy49_1209c	Spy49_1210c			TRUE	0.998	2.000	0.711	NA	Y	NA
5672638	5672639	Spy49_1210c	Spy49_1211c			TRUE	0.996	5.000	0.948	NA		NA
5672639	5672640	Spy49_1211c	Spy49_1212c			TRUE	0.997	0.000	0.891	NA		NA
5672640	5672641	Spy49_1212c	Spy49_1213c			TRUE	0.713	133.000	0.664	NA		NA
5672641	5672642	Spy49_1213c	Spy49_1215c		valS	FALSE	0.083	160.000	0.000	1.000		NA
5672642	5672643	Spy49_1215c	Spy49_1216c	valS		TRUE	0.949	2.000	0.008	NA		NA
5672643	5672644	Spy49_1216c	Spy49_1217c			TRUE	0.966	-3.000	0.033	NA		NA
5672644	5672645	Spy49_1217c	Spy49_1218c			FALSE	0.041	427.000	0.000	NA		NA
5672645	5672646	Spy49_1218c	Spy49_1219c			TRUE	0.756	18.000	0.000	NA		NA
5672647	5672648	Spy49_tRNAthr3	Spy49_1220		aroA2	FALSE	0.075	241.000	0.000	NA		NA
5672648	5672649	Spy49_1220	Spy49_1221	aroA2	aroB	TRUE	0.965	56.000	0.003	0.003	Y	NA
5672650	5672651	Spy49_1222c	Spy49_1223c			TRUE	0.918	2.000	0.000	NA		NA
5672651	5672652	Spy49_1223c	Spy49_1224c			TRUE	0.657	53.000	0.026	NA		NA
5672652	5672653	Spy49_1224c	Spy49_1225c		aroE1	FALSE	0.030	235.000	0.000	1.000	N	NA
5672653	5672654	Spy49_1225c	Spy49_1226c	aroE1		FALSE	0.161	138.000	0.061	1.000	N	NA
5672654	5672655	Spy49_1226c	Spy49_1227c			TRUE	0.862	20.000	0.167	1.000	N	NA
5672655	5672656	Spy49_1227c	Spy49_1228c			TRUE	0.998	0.000	0.167	0.011	Y	NA
5672656	5672657	Spy49_1228c	Spy49_1229c			TRUE	0.994	-10.000	0.667	NA		NA
5672657	5672658	Spy49_1229c	Spy49_1230c			FALSE	0.058	306.000	0.000	NA		NA
5672658	5672659	Spy49_1230c	Spy49_1231c			TRUE	0.967	81.000	0.333	0.027	Y	NA
5672659	5672660	Spy49_1231c	Spy49_1233c			TRUE	0.999	10.000	0.917	0.027	Y	NA
5672662	5672663	Spy49_1235c	Spy49_1236c		hyl	TRUE	0.878	24.000	0.182	1.000		NA
5672663	5672664	Spy49_1236c	Spy49_1237c	hyl		TRUE	0.831	51.000	0.286	1.000		NA
5672665	5672666	Spy49_1238	Spy49_1239			TRUE	0.930	15.000	0.194	1.000		NA
5672667	5672668	Spy49_1240c	Spy49_1241c			FALSE	0.022	666.000	0.000	NA	N	NA
5672669	5672670	Spy49_1242	Spy49_1243	recX		TRUE	0.493	80.000	0.025	NA		NA
5672670	5672671	Spy49_1243	Spy49_1244			FALSE	0.047	370.000	0.000	NA		NA
5672671	5672672	Spy49_1244	Spy49_1245			TRUE	0.795	15.000	0.000	NA		NA
5672673	5672674	Spy49_tRNAglu2	Spy49_tRNAile3			TRUE	0.699	23.000	0.000	NA		NA
5672674	5672675	Spy49_tRNAile3	Spy49_tRNAthr4			TRUE	0.601	36.000	0.000	NA		NA
5672675	5672676	Spy49_tRNAthr4	Spy49_tRNAleu6			TRUE	0.845	11.000	0.000	NA		NA
5672676	5672677	Spy49_tRNAleu6	Spy49_tRNAasp3			TRUE	0.350	75.000	0.000	NA		NA
5672677	5672678	Spy49_tRNAasp3	Spy49_tRNAval4			TRUE	0.756	18.000	0.000	NA		NA
5672678	5672679	Spy49_tRNAval4	Spy49_rRNA5s5			TRUE	0.756	18.000	0.000	NA		NA
5672679	5672680	Spy49_rRNA5s5	Spy49_rRNA23s5			FALSE	0.284	87.000	0.000	NA		NA
5672680	5672681	Spy49_rRNA23s5	Spy49_tRNAala5			FALSE	0.059	299.000	0.000	NA		NA
5672681	5672682	Spy49_tRNAala5	Spy49_rRNA16s5			FALSE	0.116	162.000	0.000	NA		NA
5672682	5672683	Spy49_rRNA16s5	Spy49_1247c			FALSE	0.030	1012.000	0.000	NA		NA
5672683	5672684	Spy49_1247c	Spy49_1248c		comF	TRUE	0.546	80.000	0.080	NA		NA
5672684	5672685	Spy49_1248c	Spy49_1249c	comF		TRUE	0.954	-28.000	0.130	NA		NA
5672686	5672687	Spy49_1250	Spy49_1251		cysM	FALSE	0.218	128.000	0.033	1.000		NA
5672688	5672689	Spy49_1252c	Spy49_1253c			TRUE	0.973	0.000	0.151	1.000		NA
5672689	5672690	Spy49_1253c	Spy49_1254c			TRUE	0.810	37.000	0.164	1.000		NA
5672690	5672691	Spy49_1254c	Spy49_1255c			TRUE	1.000	-7.000	0.853	0.011	Y	NA
5672691	5672692	Spy49_1255c	Spy49_1256c			TRUE	0.996	-3.000	0.679	NA		NA
5672692	5672693	Spy49_1256c	Spy49_1257c			FALSE	0.286	123.000	0.039	NA		NA
5672693	5672694	Spy49_1257c	Spy49_1259c		pppL	TRUE	0.998	-3.000	0.704	1.000	Y	NA
5672694	5672695	Spy49_1259c	Spy49_1260c	pppL	sunL	TRUE	0.660	38.000	0.074	1.000	N	NA
5672695	5672696	Spy49_1260c	Spy49_1261c	sunL	fmt	TRUE	0.993	-10.000	0.305	1.000	Y	NA
5672696	5672697	Spy49_1261c	Spy49_1262c	fmt	priA	TRUE	0.487	62.000	0.052	1.000	N	NA
5672697	5672698	Spy49_1262c	Spy49_1263c	priA		TRUE	0.814	65.000	0.032	0.054	N	NA
5672698	5672699	Spy49_1263c	Spy49_1265c			TRUE	0.960	16.000	0.471	1.000	N	NA
5672699	5672700	Spy49_1265c	Spy49_1266c			FALSE	0.233	110.000	0.010	1.000		NA
5672700	5672701	Spy49_1266c	Spy49_1267c			FALSE	0.166	130.000	0.006	1.000		NA
5672702	5672703	Spy49_1268	Spy49_1269	atoB	atoD1	TRUE	0.942	24.000	0.150	1.000	Y	NA
5672703	5672704	Spy49_1269	Spy49_1270	atoD1	atoA	TRUE	0.999	2.000	0.200	0.002	Y	NA
5672704	5672705	Spy49_1270	Spy49_1271	atoA		TRUE	0.977	33.000	0.111	0.041	Y	NA
5672705	5672706	Spy49_1271	Spy49_1272			TRUE	0.742	71.000	0.333	1.000	N	NA
5672706	5672707	Spy49_1272	Spy49_1273		luxS	TRUE	0.305	74.000	0.006	1.000	N	NA
5672708	5672709	Spy49_1274c	Spy49_1275c			TRUE	0.894	14.000	0.029	NA		NA
5672709	5672710	Spy49_1275c	Spy49_1276c			FALSE	0.040	445.000	0.000	NA		NA
5672710	5672711	Spy49_1276c	Spy49_1277c			TRUE	0.704	128.000	0.579	NA		NA
5672712	5672713	Spy49_1278	Spy49_1279	recU	pbp1A	TRUE	0.981	-13.000	0.319	1.000		NA
5672714	5672715	Spy49_1280c	Spy49_1281c	pepC	nadE	FALSE	0.100	185.000	0.017	1.000	N	NA
5672715	5672716	Spy49_1281c	Spy49_1282c	nadE		TRUE	0.998	-22.000	0.194	0.003	Y	NA
5672716	5672717	Spy49_1282c	Spy49_1283c		aapA	FALSE	0.123	171.000	0.032	1.000	N	NA
5672717	5672718	Spy49_1283c	Spy49_1284c	aapA	nox2	FALSE	0.125	169.000	0.033	1.000	N	NA
5672718	5672719	Spy49_1284c	Spy49_1285c	nox2		TRUE	0.688	64.000	0.117	NA		NA
5672719	5672720	Spy49_1285c	Spy49_1286c			TRUE	0.675	104.000	0.364	NA		NA
5672720	5672721	Spy49_1286c	Spy49_1287c			TRUE	0.994	0.000	0.310	1.000	Y	NA
5672721	5672722	Spy49_1287c	Spy49_1289c			FALSE	0.098	195.000	0.018	1.000	N	NA
5672722	5672723	Spy49_1289c	Spy49_1290c		mraY	FALSE	0.100	158.000	0.007	1.000	N	NA
5672723	5672724	Spy49_1290c	Spy49_1291c	mraY	ftsI	TRUE	0.982	2.000	0.038	1.000	Y	NA
5672724	5672725	Spy49_1291c	Spy49_1292c	ftsI	ftsL	TRUE	0.983	4.000	0.456	1.000	N	NA
5672725	5672726	Spy49_1292c	Spy49_1293c	ftsL	mraW	TRUE	0.922	5.000	0.077	1.000	N	NA
5672726	5672727	Spy49_1293c	Spy49_1294c	mraW		FALSE	0.050	351.000	0.000	NA		NA
5672727	5672728	Spy49_1294c	Spy49_1295c		proA	TRUE	0.876	-25.000	0.000	NA		NA
5672728	5672729	Spy49_1295c	Spy49_1296c	proA	proB	TRUE	0.999	-7.000	0.281	0.002	Y	NA
5672729	5672730	Spy49_1296c	Spy49_1297c	proB		TRUE	0.545	64.000	0.006	NA		NA
5672730	5672731	Spy49_1297c	Spy49_1298c			TRUE	0.984	5.000	0.341	NA		NA
5672731	5672732	Spy49_1298c	Spy49_1299c			TRUE	0.839	34.000	0.136	NA		NA
5672732	5672733	Spy49_1299c	Spy49_1300c		tkt	TRUE	0.407	192.000	0.300	NA		NA
5672733	5672734	Spy49_1300c	Spy49_1301c	tkt	tal	FALSE	0.209	218.000	0.000	1.000	Y	NA
5672734	5672735	Spy49_1301c	Spy49_1303c	tal		FALSE	0.155	126.000	0.000	NA		NA
5672735	5672736	Spy49_1303c	Spy49_1304c		npx	TRUE	0.990	-10.000	0.462	NA		NA
5672736	5672737	Spy49_1304c	Spy49_1305c	npx	glpF1	TRUE	0.608	109.000	0.364	1.000		NA
5672737	5672738	Spy49_1305c	Spy49_1306c	glpF1	glpO	TRUE	0.988	2.000	0.500	1.000	N	NA
5672738	5672739	Spy49_1306c	Spy49_1307c	glpO	glpK	TRUE	0.998	16.000	0.500	0.001	Y	NA
5672739	5672740	Spy49_1307c	Spy49_1308c	glpK		FALSE	0.034	360.000	0.000	1.000		NA
5672740	5672741	Spy49_1308c	Spy49_1309c			FALSE	0.264	128.000	0.029	NA		NA
5672741	5672742	Spy49_1309c	Spy49_1310c		glyS	FALSE	0.212	154.000	0.020	NA		NA
5672742	5672743	Spy49_1310c	Spy49_1311c	glyS	glyQ	TRUE	0.921	372.000	0.651	0.001	Y	NA
5672743	5672744	Spy49_1311c	Spy49_1312c	glyQ		FALSE	0.032	373.000	0.000	1.000		NA
5672744	5672745	Spy49_1312c	Spy49_1313c			FALSE	0.202	159.000	0.074	1.000		NA
5672745	5672746	Spy49_1313c	Spy49_1314c		nagA	FALSE	0.242	122.000	0.045	1.000		NA
5672746	5672747	Spy49_1314c	Spy49_1316c	nagA		FALSE	0.240	117.000	0.090	1.000	N	NA
5672747	5672748	Spy49_1316c	Spy49_1318c			FALSE	0.030	1051.000	0.000	NA		NA
5672750	5672751	Spy49_1320c	Spy49_1321c			TRUE	0.960	2.000	0.047	NA		NA
5672751	5672752	Spy49_1321c	Spy49_1322c		lacD1	FALSE	0.169	197.000	0.019	NA		NA
5672752	5672753	Spy49_1322c	Spy49_1323c	lacD1	lacC1	TRUE	0.820	82.000	0.000	0.004		NA
5672753	5672754	Spy49_1323c	Spy49_1324c	lacC1		TRUE	0.985	-195.000	0.000	0.002		NA
5672754	5672755	Spy49_1324c	Spy49_1325c		lacB	TRUE	0.811	10.000	0.000	1.000		NA
5672755	5672756	Spy49_1325c	Spy49_1326c	lacB	lacA	TRUE	0.998	15.000	0.500	0.002	Y	NA
5672756	5672757	Spy49_1326c	Spy49_1327c	lacA		FALSE	0.177	258.000	0.000	1.000	Y	NA
5672757	5672758	Spy49_1327c	Spy49_1328c			TRUE	0.972	26.000	0.000	0.022	Y	NA
5672758	5672759	Spy49_1328c	Spy49_1329c			TRUE	0.999	-7.000	0.429	0.014	Y	NA
5672761	5672762	Spy49_1331c	Spy49_1332c	copZ	copA	TRUE	0.994	14.000	0.048	0.002	Y	NA
5672762	5672763	Spy49_1332c	Spy49_1334c	copA	copY	TRUE	0.944	0.000	0.064	1.000	N	NA
5672765	5672766	Spy49_1336c	Spy49_1337c	rbfA	infB	TRUE	0.698	206.000	0.530	1.000	Y	NA
5672766	5672767	Spy49_1337c	Spy49_1338c	infB		TRUE	0.971	20.000	0.223	NA	Y	NA
5672767	5672768	Spy49_1338c	Spy49_1339c			TRUE	0.988	-7.000	0.408	NA	N	NA
5672768	5672769	Spy49_1339c	Spy49_1340c		nusA	TRUE	0.983	16.000	0.323	NA	Y	NA
5672769	5672770	Spy49_1340c	Spy49_1341c	nusA		TRUE	0.702	175.000	0.759	NA		NA
5672770	5672771	Spy49_1341c	Spy49_tRNAser1			FALSE	0.199	108.000	0.000	NA		NA
5672771	5672772	Spy49_tRNAser1	Spy49_1342c			TRUE	0.419	65.000	0.000	NA		NA
5672772	5672773	Spy49_1342c	Spy49_1343c			TRUE	0.979	0.000	0.154	NA		NA
5672773	5672774	Spy49_1343c	Spy49_1344c			TRUE	0.614	64.000	0.107	NA	N	NA
5672774	5672775	Spy49_1344c	Spy49_1345c			TRUE	0.967	3.000	0.167	NA	N	NA
5672776	5672777	Spy49_1346	Spy49_1347	hit		TRUE	0.969	-3.000	0.063	NA		NA
5672778	5672779	Spy49_1348c	Spy49_1349c			TRUE	0.971	9.000	0.283	NA	N	NA
5672779	5672780	Spy49_1349c	Spy49_1350c			TRUE	0.936	-25.000	0.033	NA		NA
5672780	5672781	Spy49_1350c	Spy49_1351c			FALSE	0.185	154.000	0.008	NA		NA
5672782	5672783	Spy49_1352	Spy49_1353			TRUE	0.904	17.000	0.111	NA		NA
5672783	5672784	Spy49_1353	Spy49_1354		manL	FALSE	0.050	352.000	0.000	NA		NA
5672784	5672785	Spy49_1354	Spy49_1355	manL	manM	TRUE	0.989	89.000	0.943	0.022	Y	NA
5672785	5672786	Spy49_1355	Spy49_1356	manM	manN	TRUE	0.998	17.000	0.812	0.022	Y	NA
5672786	5672787	Spy49_1356	Spy49_1357	manN		TRUE	0.758	114.000	0.583	NA		NA
5672787	5672788	Spy49_1357	Spy49_1358		serS	FALSE	0.064	391.000	0.003	NA		NA
5672789	5672790	Spy49_1359c	Spy49_1360c	accA	accD	TRUE	0.999	-3.000	0.234	0.002	Y	NA
5672790	5672791	Spy49_1360c	Spy49_1361c	accD	accC	TRUE	0.977	9.000	0.090	1.000	Y	NA
5672791	5672792	Spy49_1361c	Spy49_1362c	accC	fabz	TRUE	0.898	32.000	0.045	1.000	Y	NA
5672792	5672793	Spy49_1362c	Spy49_1363c	fabz	accB	TRUE	0.998	-3.000	0.047	0.007	Y	NA
5672793	5672794	Spy49_1363c	Spy49_1364c	accB	fabF	TRUE	0.984	2.000	0.074	1.000	Y	NA
5672794	5672795	Spy49_1364c	Spy49_1365c	fabF	fabG	TRUE	0.952	15.000	0.056	1.000	Y	NA
5672795	5672796	Spy49_1365c	Spy49_1366c	fabG	fabD	TRUE	0.999	-10.000	0.432	0.007	Y	NA
5672796	5672797	Spy49_1366c	Spy49_1367c	fabD	fabK	TRUE	0.819	25.000	0.099	1.000		NA
5672797	5672798	Spy49_1367c	Spy49_1368c	fabK	acpP2	FALSE	0.282	201.000	0.216	1.000		NA
5672798	5672799	Spy49_1368c	Spy49_1369c	acpP2	fabH	TRUE	0.928	61.000	0.065	0.007		NA
5672799	5672800	Spy49_1369c	Spy49_1370c	fabH		TRUE	0.942	1.000	0.070	1.000	N	NA
5672800	5672801	Spy49_1370c	Spy49_1371c		phaB	TRUE	0.464	74.000	0.098	1.000	N	NA
5672801	5672802	Spy49_1371c	Spy49_1372c	phaB	dnaJ	FALSE	0.032	221.000	0.000	1.000	N	NA
5672804	5672805	Spy49_1374c	Spy49_1375c	dnaK	grpE	TRUE	0.797	181.000	0.026	0.006	Y	NA
5672805	5672806	Spy49_1375c	Spy49_1376c	grpE	hrcA	TRUE	0.922	3.000	0.051	1.000	N	NA
5672806	5672807	Spy49_1376c	Spy49_1377c	hrcA		FALSE	0.132	127.000	0.009	1.000	N	NA
5672807	5672808	Spy49_1377c	Spy49_1378c			TRUE	0.970	-3.000	0.174	1.000	N	NA
5672808	5672809	Spy49_1378c	Spy49_1379c			TRUE	0.961	-10.000	0.174	1.000	N	NA
5672809	5672810	Spy49_1379c	Spy49_1380c			FALSE	0.031	392.000	0.000	1.000		NA
5672810	5672811	Spy49_1380c	Spy49_1381c			FALSE	0.083	219.000	0.000	NA		NA
5672811	5672812	Spy49_1381c	Spy49_1382c		gatB	TRUE	0.931	-3.000	0.000	NA		NA
5672812	5672813	Spy49_1382c	Spy49_1383c	gatB	gatA	TRUE	1.000	0.000	0.492	0.002	Y	NA
5672813	5672814	Spy49_1383c	Spy49_1384c	gatA	gatC	TRUE	1.000	0.000	0.643	0.002	Y	NA
5672814	5672815	Spy49_1384c	Spy49_1385c	gatC		FALSE	0.083	232.000	0.002	1.000		NA
5672815	5672816	Spy49_1385c	Spy49_1386c			FALSE	0.025	515.000	0.000	1.000		NA
5672816	5672817	Spy49_1386c	Spy49_1387c		codY	FALSE	0.170	147.000	0.083	1.000	N	NA
5672817	5672818	Spy49_1387c	Spy49_1388c	codY		FALSE	0.082	218.000	0.015	1.000	N	NA
5672822	5672823	Spy49_1392c	Spy49_1393c			TRUE	0.817	13.000	0.000	NA		NA
5672823	5672824	Spy49_1393c	Spy49_1394c		recG	FALSE	0.023	292.000	0.000	1.000	N	NA
5672824	5672825	Spy49_1394c	Spy49_1395c	recG		FALSE	0.032	375.000	0.000	1.000		NA
5672825	5672826	Spy49_1395c	Spy49_1396c			TRUE	0.979	-63.000	0.429	1.000		NA
5672826	5672827	Spy49_1396c	Spy49_1397c			TRUE	0.994	-3.000	0.562	NA		NA
5672827	5672828	Spy49_1397c	Spy49_1398c		cycC	TRUE	0.971	-3.000	0.081	NA		NA
5672828	5672829	Spy49_1398c	Spy49_1400c	cycC	cycD	TRUE	0.999	-7.000	0.576	0.006	N	NA
5672829	5672830	Spy49_1400c	Spy49_1401c	cycD	fhuC2	TRUE	0.941	-3.000	0.047	1.000	N	NA
5672830	5672831	Spy49_1401c	Spy49_1402c	fhuC2	fhuB2	TRUE	0.998	-3.000	0.657	1.000	Y	NA
5672831	5672832	Spy49_1402c	Spy49_1403c	fhuB2	fhuD2	TRUE	0.998	2.000	0.877	1.000	Y	NA
5672832	5672833	Spy49_1403c	Spy49_1405c	fhuD2		FALSE	0.067	197.000	0.000	1.000		NA
5672833	5672834	Spy49_1405c	Spy49_1407c		isp2	FALSE	0.038	490.000	0.000	NA		NA
5672834	5672835	Spy49_1407c	Spy49_1408c	isp2	alr	TRUE	0.440	87.000	0.022	NA		NA
5672835	5672836	Spy49_1408c	Spy49_1409c	alr	acpS	TRUE	0.953	-3.000	0.093	1.000	N	NA
5672836	5672837	Spy49_1409c	Spy49_1410c	acpS	secA	FALSE	0.154	116.000	0.008	1.000	N	NA
5672837	5672838	Spy49_1410c	Spy49_1412c	secA	pmi	FALSE	0.034	1461.000	0.042	1.000	N	NA
5672838	5672839	Spy49_1412c	Spy49_1413c	pmi	scrK	TRUE	0.940	47.000	0.333	1.000	Y	NA
5672839	5672840	Spy49_1413c	Spy49_1414c	scrK	endoS	FALSE	0.267	169.000	0.000	1.000	Y	NA
5672840	5672841	Spy49_1414c	Spy49_1415c	endoS	scrA	FALSE	0.198	231.000	0.000	1.000	Y	NA
5672842	5672843	Spy49_1416	Spy49_1417	scrB	scrR	TRUE	0.987	5.000	0.571	1.000	N	NA
5672844	5672845	Spy49_1418c	Spy49_1419c	nusB		TRUE	0.985	-7.000	0.265	NA		NA
5672845	5672846	Spy49_1419c	Spy49_1420c		efp	TRUE	0.701	46.000	0.031	NA		NA
5672846	5672847	Spy49_1420c	Spy49_1421c	efp	comEB	FALSE	0.189	96.000	0.005	1.000	N	NA
5672847	5672848	Spy49_1421c	Spy49_1422c	comEB	pepP	TRUE	0.616	35.000	0.018	1.000	N	NA
5672848	5672849	Spy49_1422c	Spy49_1423c	pepP	uvrA	FALSE	0.156	115.000	0.008	1.000	N	NA
5672850	5672851	Spy49_1424	Spy49_1425			FALSE	0.280	132.000	0.072	NA		NA
5672852	5672853	Spy49_1426c	Spy49_1427c	rpsR	ssb2	FALSE	0.104	165.000	0.012	1.000	N	NA
5672853	5672854	Spy49_1427c	Spy49_1428c	ssb2	rpsF	TRUE	0.682	22.000	0.012	1.000	N	NA
5672854	5672855	Spy49_1428c	Spy49_1429c	rpsF		FALSE	0.110	173.000	0.000	NA		NA
5672856	5672857	Spy49_1430	Spy49_1431	mutY		FALSE	0.075	177.000	0.002	1.000	N	NA
5672858	5672859	Spy49_1432c	Spy49_1433c	trx2		TRUE	0.438	81.000	0.053	1.000		NA
5672859	5672860	Spy49_1433c	Spy49_1434c		mutS2	FALSE	0.219	109.000	0.005	1.000		NA
5672860	5672861	Spy49_1434c	Spy49_1435c	mutS2		FALSE	0.207	149.000	0.070	1.000		NA
5672861	5672862	Spy49_1435c	Spy49_1436c			TRUE	0.951	3.000	0.019	NA		NA
5672863	5672864	Spy49_1437	Spy49_1438		spi	TRUE	0.885	11.000	0.080	1.000	N	NA
5672864	5672865	Spy49_1438	Spy49_1439	spi	recD	TRUE	0.579	58.000	0.099	1.000	N	NA
5672865	5672866	Spy49_1439	Spy49_1440	recD		TRUE	0.434	91.000	0.050	NA		NA
5672869	5672870	Spy49_1443c	Spy49_1444c		cppA	TRUE	0.984	-15.000	0.326	NA		NA
5672872	5672873	Spy49_1447c	Spy49_1449c	glpF2	norA	FALSE	0.138	403.000	0.000	NA	Y	NA
5672874	5672875	Spy49_1450	Spy49_1451		pepXP	TRUE	0.825	22.000	0.081	1.000		NA
5672879	5672880	Spy49_1455	Spy49_1456	spd3		FALSE	0.045	380.000	0.000	NA		NA
5672881	5672882	Spy49_1457c	Spy49_1458c			TRUE	0.979	-12.000	0.231	NA		NA
5672882	5672883	Spy49_1458c	Spy49_1459c			FALSE	0.130	140.000	0.000	NA		NA
5672883	5672884	Spy49_1459c	Spy49_1460c			FALSE	0.178	116.000	0.000	NA		NA
5672884	5672885	Spy49_1460c	Spy49_1461c			TRUE	0.931	-3.000	0.000	NA		NA
5672885	5672886	Spy49_1461c	Spy49_1462c			TRUE	0.863	10.000	0.000	NA		NA
5672886	5672887	Spy49_1462c	Spy49_1463c			TRUE	0.909	3.000	0.000	NA		NA
5672887	5672888	Spy49_1463c	Spy49_1464c			TRUE	0.806	14.000	0.000	NA		NA
5672888	5672889	Spy49_1464c	Spy49_1465c			TRUE	0.707	16.000	0.000	1.000		NA
5672889	5672890	Spy49_1465c	Spy49_1466c			TRUE	0.931	-3.000	0.000	NA		NA
5672890	5672891	Spy49_1466c	Spy49_1467c			TRUE	0.931	-3.000	0.000	NA		NA
5672891	5672892	Spy49_1467c	Spy49_1468c			TRUE	0.629	33.000	0.000	NA		NA
5672892	5672893	Spy49_1468c	Spy49_1470c			TRUE	0.795	15.000	0.000	NA		NA
5672893	5672894	Spy49_1470c	Spy49_1471c			TRUE	0.895	42.000	0.312	NA		NA
5672894	5672895	Spy49_1471c	Spy49_1472c			TRUE	0.713	53.000	0.093	NA		NA
5672895	5672896	Spy49_1472c	Spy49_1474c			TRUE	0.934	10.000	0.062	NA		NA
5672896	5672897	Spy49_1474c	Spy49_1475c			TRUE	0.995	-3.000	0.667	NA		NA
5672897	5672898	Spy49_1475c	Spy49_1476c			TRUE	0.975	-10.000	0.167	NA		NA
5672898	5672899	Spy49_1476c	Spy49_1477c			TRUE	0.988	-3.000	0.286	NA		NA
5672899	5672900	Spy49_1477c	Spy49_1478c			TRUE	0.974	14.000	0.429	NA		NA
5672900	5672901	Spy49_1478c	Spy49_1479c			TRUE	0.975	10.000	0.286	NA		NA
5672901	5672902	Spy49_1479c	Spy49_1480c			TRUE	0.984	3.000	0.286	NA		NA
5672902	5672903	Spy49_1480c	Spy49_1481c			TRUE	0.939	10.000	0.077	NA		NA
5672903	5672904	Spy49_1481c	Spy49_1482c			FALSE	0.126	144.000	0.000	NA		NA
5672904	5672905	Spy49_1482c	Spy49_1483c			TRUE	0.909	3.000	0.000	NA		NA
5672905	5672906	Spy49_1483c	Spy49_1484c			TRUE	0.384	70.000	0.000	NA		NA
5672906	5672907	Spy49_1484c	Spy49_1485c			TRUE	0.902	4.000	0.000	NA		NA
5672907	5672908	Spy49_1485c	Spy49_1486c			TRUE	0.887	-19.000	0.000	NA		NA
5672908	5672909	Spy49_1486c	Spy49_1487c			TRUE	0.964	12.000	0.250	NA		NA
5672909	5672910	Spy49_1487c	Spy49_1488c			TRUE	0.989	-22.000	0.000	0.002		NA
5672910	5672911	Spy49_1488c	Spy49_1489c			FALSE	0.031	832.000	0.000	NA		NA
5672911	5672912	Spy49_1489c	Spy49_1491c			FALSE	0.040	440.000	0.000	NA		NA
5672912	5672913	Spy49_1491c	Spy49_1492c			TRUE	0.931	-3.000	0.000	NA		NA
5672913	5672914	Spy49_1492c	Spy49_1493c			TRUE	0.998	-3.000	1.000	NA		NA
5672914	5672915	Spy49_1493c	Spy49_1494c			FALSE	0.229	98.000	0.000	NA		NA
5672915	5672916	Spy49_1494c	Spy49_1496c			FALSE	0.063	285.000	0.000	NA		NA
5672916	5672917	Spy49_1496c	Spy49_1497c			TRUE	0.893	-16.000	0.000	NA		NA
5672917	5672918	Spy49_1497c	Spy49_1498c			FALSE	0.076	239.000	0.000	NA		NA
5672918	5672919	Spy49_1498c	Spy49_1499c			TRUE	0.503	76.000	0.018	NA		NA
5672919	5672920	Spy49_1499c	Spy49_1500c			FALSE	0.062	209.000	0.000	1.000		NA
5672920	5672921	Spy49_1500c	Spy49_1501c			TRUE	0.961	-7.000	0.034	NA		NA
5672921	5672922	Spy49_1501c	Spy49_1502c			TRUE	0.963	1.000	0.051	NA		NA
5672922	5672923	Spy49_1502c	Spy49_1504c			FALSE	0.238	358.000	0.286	NA		NA
5672923	5672924	Spy49_1504c	Spy49_1505c			TRUE	0.993	-13.000	0.667	NA		NA
5672924	5672925	Spy49_1505c	Spy49_1506c			FALSE	0.128	141.000	0.000	NA		NA
5672925	5672926	Spy49_1506c	Spy49_1507c			FALSE	0.178	116.000	0.000	NA		NA
5672926	5672927	Spy49_1507c	Spy49_1509c			FALSE	0.041	426.000	0.000	NA		NA
5672927	5672928	Spy49_1509c	Spy49_1510c			FALSE	0.110	173.000	0.000	NA		NA
5672928	5672929	Spy49_1510c	Spy49_1511c			FALSE	0.143	131.000	0.000	NA		NA
5672929	5672930	Spy49_1511c	Spy49_1512c			FALSE	0.063	282.000	0.000	NA		NA
5672930	5672931	Spy49_1512c	Spy49_1513c			TRUE	0.356	74.000	0.000	NA		NA
5672931	5672932	Spy49_1513c	Spy49_1514c			FALSE	0.092	203.000	0.000	NA		NA
5672932	5672933	Spy49_1514c	Spy49_1516c			FALSE	0.067	272.000	0.000	NA		NA
5672933	5672934	Spy49_1516c	Spy49_1517c			TRUE	0.638	32.000	0.000	NA		NA
5672934	5672935	Spy49_1517c	Spy49_1518c			TRUE	0.536	33.000	0.000	1.000		NA
5672935	5672936	Spy49_1518c	Spy49_1520c			FALSE	0.098	188.000	0.000	NA		NA
5672936	5672937	Spy49_1520c	Spy49_1521c			FALSE	0.065	277.000	0.000	NA		NA
5672938	5672939	Spy49_1522	Spy49_1525			FALSE	0.066	274.000	0.000	NA		NA
5672939	5672940	Spy49_1525	Spy49_1526			FALSE	0.178	116.000	0.000	NA		NA
5672942	5672943	Spy49_1529	Spy49_1530			TRUE	0.365	73.000	0.000	NA		NA
5672943	5672944	Spy49_1530	Spy49_1531			FALSE	0.167	121.000	0.000	NA		NA
5672944	5672945	Spy49_1531	Spy49_1532			TRUE	0.580	39.000	0.000	NA		NA
5672946	5672947	Spy49_1533c	Spy49_1534c		dnaQ	FALSE	0.230	153.000	0.156	1.000	N	NA
5672947	5672948	Spy49_1534c	Spy49_1535c	dnaQ		TRUE	0.695	49.000	0.057	NA		NA
5672948	5672949	Spy49_1535c	Spy49_1536c			FALSE	0.155	126.000	0.000	NA		NA
5672949	5672950	Spy49_1536c	Spy49_1537c			TRUE	0.982	-97.000	0.000	0.008		NA
5672952	5672953	Spy49_1540c	Spy49_1541c	deoC	nupC	TRUE	0.964	30.000	0.333	1.000	Y	NA
5672953	5672954	Spy49_1541c	Spy49_1542c	nupC	udp	TRUE	0.919	21.000	0.015	1.000	Y	NA
5672955	5672956	Spy49_1543	Spy49_1544		rpsN2	FALSE	0.035	209.000	0.000	1.000	N	NA
5672957	5672958	Spy49_1545c	Spy49_1546c	gcp		TRUE	0.875	-10.000	0.000	1.000		NA
5672958	5672959	Spy49_1546c	Spy49_1547c			TRUE	0.823	-28.000	0.000	1.000		NA
5672960	5672961	Spy49_1548	Spy49_1549			TRUE	0.993	2.000	0.576	NA		NA
5672962	5672963	Spy49_1550c	Spy49_1551c	glnA	glnR	TRUE	0.777	38.000	0.179	1.000	N	NA
5672963	5672964	Spy49_1551c	Spy49_1552c	glnR		TRUE	0.701	67.000	0.154	NA		NA
5672964	5672965	Spy49_1552c	Spy49_1553c		pgk	FALSE	0.095	262.000	0.002	NA		NA
5672965	5672966	Spy49_1553c	Spy49_1554c	pgk	lppC	FALSE	0.107	185.000	0.003	1.000		NA
5672966	5672967	Spy49_1554c	Spy49_1555c	lppC		FALSE	0.053	240.000	0.000	1.000		NA
5672967	5672968	Spy49_1555c	Spy49_1556c			FALSE	0.090	237.000	0.006	1.000		NA
5672968	5672969	Spy49_1556c	Spy49_1557c		asp	TRUE	0.994	0.000	0.567	NA		NA
5672969	5672970	Spy49_1557c	Spy49_1558c	asp	rpmB	FALSE	0.227	152.000	0.044	NA		NA
5672970	5672971	Spy49_1558c	Spy49_1559c	rpmB	fba	FALSE	0.017	382.000	0.000	1.000	N	NA
5672971	5672972	Spy49_1559c	Spy49_tRNAleu7	fba		FALSE	0.091	207.000	0.000	NA		NA
5672972	5672973	Spy49_tRNAleu7	Spy49_1560c			TRUE	0.483	54.000	0.000	NA		NA
5672973	5672974	Spy49_1560c	Spy49_1561c		pyrG	FALSE	0.117	168.000	0.002	1.000		NA
5672974	5672975	Spy49_1561c	Spy49_1562c	pyrG	rpoE	FALSE	0.076	257.000	0.029	1.000	N	NA
5672975	5672976	Spy49_1562c	Spy49_1563c	rpoE	tig	FALSE	0.079	184.000	0.005	1.000	N	NA
5672978	5672979	Spy49_1565c	Spy49_1566c			TRUE	0.933	14.000	0.149	NA		NA
5672979	5672980	Spy49_1566c	Spy49_1567c		thiD	TRUE	0.983	-10.000	0.276	NA		NA
5672980	5672981	Spy49_1567c	Spy49_1568c	thiD	truA	TRUE	0.927	-10.000	0.058	1.000	N	NA
5672981	5672982	Spy49_1568c	Spy49_1569c	truA	comX2	FALSE	0.029	417.000	0.000	1.000		NA
5672982	5672983	Spy49_1569c	Spy49_tRNAarg6	comX2		FALSE	0.257	92.000	0.000	NA		NA
5672983	5672984	Spy49_tRNAarg6	Spy49_tRNAasn2			TRUE	0.326	80.000	0.000	NA		NA
5672984	5672985	Spy49_tRNAasn2	Spy49_rRNA5s6			TRUE	0.890	6.000	0.000	NA		NA
5672985	5672986	Spy49_rRNA5s6	Spy49_rRNA23s6			FALSE	0.284	87.000	0.000	NA		NA
5672986	5672987	Spy49_rRNA23s6	Spy49_tRNAala6			FALSE	0.059	299.000	0.000	NA		NA
5672987	5672988	Spy49_tRNAala6	Spy49_rRNA16s6			FALSE	0.116	162.000	0.000	NA		NA
5672988	5672989	Spy49_rRNA16s6	Spy49_1571c			FALSE	0.038	491.000	0.000	NA		NA
5672990	5672991	Spy49_1572	Spy49_1573	hsdR	hsdS	TRUE	0.996	13.000	0.087	0.001	Y	NA
5672991	5672992	Spy49_1573	Spy49_1574	hsdS	hsdM	TRUE	0.988	13.000	0.022	0.051	Y	NA
5672993	5672994	Spy49_1575c	Spy49_1576c		salR	FALSE	0.127	143.000	0.000	NA		NA
5672994	5672995	Spy49_1576c	Spy49_1577c	salR	salK	TRUE	0.997	-19.000	0.704	NA	Y	NA
5672995	5672996	Spy49_1577c	Spy49_1578c	salK	salY	FALSE	0.103	181.000	0.000	NA		NA
5672996	5672997	Spy49_1578c	Spy49_1579c	salY	salX	TRUE	0.884	2.000	0.000	1.000		NA
5672997	5672998	Spy49_1579c	Spy49_1580c	salX	salT	TRUE	0.989	-3.000	0.000	0.023		NA
5672998	5672999	Spy49_1580c	Spy49_1582c	salT	salB	TRUE	0.356	74.000	0.000	NA		NA
5672999	5673000	Spy49_1582c	Spy49_1583c	salB	salA	TRUE	0.303	84.000	0.000	NA		NA
5673000	5673001	Spy49_1583c	Spy49_1584c	salA	lacG	FALSE	0.026	512.000	0.000	1.000		NA
5673001	5673002	Spy49_1584c	Spy49_1585c	lacG	lacE	TRUE	0.702	61.000	0.000	1.000	Y	NA
5673002	5673003	Spy49_1585c	Spy49_1586c	lacE	lacF	TRUE	0.998	0.000	0.150	0.013	Y	NA
5673003	5673004	Spy49_1586c	Spy49_1587c	lacF	lacD2	TRUE	0.986	24.000	0.667	1.000	Y	NA
5673004	5673005	Spy49_1587c	Spy49_1588c	lacD2	lacC2	TRUE	0.996	4.000	0.000	0.002	Y	NA
5673005	5673006	Spy49_1588c	Spy49_1589c	lacC2	lacB2	TRUE	0.766	46.000	0.000	1.000	Y	NA
5673006	5673007	Spy49_1589c	Spy49_1590c	lacB2	lacA2	TRUE	0.977	35.000	0.000	0.002	Y	NA
5673008	5673009	Spy49_1591	Spy49_1592	lacR2		FALSE	0.033	728.000	0.000	NA		NA
5673009	5673010	Spy49_1592	Spy49_1593			TRUE	0.912	-10.000	0.000	NA		NA
5673010	5673011	Spy49_1593	Spy49_1594			FALSE	0.032	766.000	0.000	NA		NA
5673012	5673013	Spy49_1595c	Spy49_1596c	rpsI	rplM	TRUE	0.997	21.000	0.601	0.024	Y	NA
5673013	5673014	Spy49_1596c	Spy49_1597c	rplM		FALSE	0.033	218.000	0.000	1.000	N	NA
5673014	5673015	Spy49_1597c	Spy49_1598c			TRUE	0.967	-3.000	0.051	NA		NA
5673015	5673016	Spy49_1598c	Spy49_1599c			FALSE	0.135	136.000	0.000	NA		NA
5673016	5673017	Spy49_1599c	Spy49_1600c			TRUE	0.493	81.000	0.036	NA		NA
5673017	5673018	Spy49_1600c	Spy49_1601c			TRUE	0.795	39.000	0.109	NA		NA
5673018	5673019	Spy49_1601c	Spy49_1602c			TRUE	0.616	47.000	0.003	NA		NA
5673019	5673020	Spy49_1602c	Spy49_1603c			FALSE	0.096	196.000	0.000	NA		NA
5673020	5673021	Spy49_1603c	Spy49_1604c		cysS	TRUE	0.966	-7.000	0.129	1.000		NA
5673021	5673022	Spy49_1604c	Spy49_1605c	cysS		TRUE	0.736	28.000	0.002	NA		NA
5673022	5673023	Spy49_1605c	Spy49_1606c		cysE	FALSE	0.039	479.000	0.000	NA		NA
5673023	5673024	Spy49_1606c	Spy49_1607c	cysE		TRUE	0.951	9.000	0.097	NA		NA
5673024	5673025	Spy49_1607c	Spy49_1608c		pnp	TRUE	0.953	-7.000	0.009	NA		NA
5673025	5673026	Spy49_1608c	Spy49_1609c	pnp		FALSE	0.025	280.000	0.000	1.000	N	NA
5673026	5673027	Spy49_1609c	Spy49_1610c		sgaT	TRUE	0.883	13.000	0.056	1.000		NA
5673027	5673028	Spy49_1610c	Spy49_1611c	sgaT		TRUE	0.979	27.000	0.241	0.021		NA
5673028	5673029	Spy49_1611c	Spy49_1612c			TRUE	0.992	-7.000	0.048	0.013	N	NA
5673029	5673030	Spy49_1612c	Spy49_1613c		rpsO	FALSE	0.019	353.000	0.000	1.000	N	NA
5673030	5673031	Spy49_1613c	Spy49_1614c	rpsO		FALSE	0.108	176.000	0.000	NA		NA
5673033	5673034	Spy49_1616c	Spy49_1617c			TRUE	0.552	131.000	0.414	1.000		NA
5673034	5673035	Spy49_1617c	Spy49_1618c		polC	FALSE	0.199	110.000	0.020	1.000	N	NA
5673035	5673036	Spy49_1618c	Spy49_1619c	polC	proS	TRUE	0.359	255.000	0.070	0.045	N	NA
5673036	5673037	Spy49_1619c	Spy49_1620c	proS	eep	FALSE	0.138	198.000	0.095	1.000	N	NA
5673037	5673038	Spy49_1620c	Spy49_1621c	eep	cdsA	TRUE	0.398	73.000	0.040	1.000	N	NA
5673038	5673039	Spy49_1621c	Spy49_1622c	cdsA	uppS	TRUE	0.966	13.000	0.113	1.000	Y	NA
5673039	5673040	Spy49_1622c	Spy49_1624c	uppS		FALSE	0.096	219.000	0.007	NA	N	NA
5673040	5673041	Spy49_1624c	Spy49_1625c			FALSE	0.194	116.000	0.006	NA	N	NA
5673041	5673042	Spy49_1625c	Spy49_1626c		pulA	FALSE	0.085	142.000	0.000	NA	N	NA
5673042	5673043	Spy49_1626c	Spy49_1627c	pulA	dexB	TRUE	0.701	291.000	0.049	0.006	Y	NA
5673043	5673044	Spy49_1627c	Spy49_1628c	dexB	msmK	TRUE	0.584	129.000	0.171	1.000	Y	NA
5673044	5673045	Spy49_1628c	Spy49_1629c	msmK	lrp	FALSE	0.102	298.000	0.071	NA	N	NA
5673047	5673048	Spy49_1631c	Spy49_1632c	dtd	relA	TRUE	0.904	15.000	0.177	1.000	N	NA
5673048	5673049	Spy49_1632c	Spy49_1633c	relA	sclA	FALSE	0.052	244.000	0.000	1.000		NA
5673051	5673052	Spy49_1635c	Spy49_1636c			TRUE	0.864	83.000	0.610	NA		NA
5673052	5673053	Spy49_1636c	Spy49_1637c			FALSE	0.049	356.000	0.000	NA		NA
5673053	5673054	Spy49_1637c	Spy49_1638c			TRUE	0.985	0.000	0.227	NA		NA
5673054	5673055	Spy49_1638c	Spy49_1639c		nudC	TRUE	0.768	17.000	0.000	NA		NA
5673055	5673056	Spy49_1639c	Spy49_1640c	nudC	nudB	FALSE	0.106	177.000	0.000	NA		NA
5673056	5673057	Spy49_1640c	Spy49_1641c	nudB	nudA	TRUE	0.808	28.000	0.048	NA		NA
5673057	5673058	Spy49_1641c	Spy49_1642c	nudA		TRUE	0.919	14.000	0.100	NA		NA
5673058	5673059	Spy49_1642c	Spy49_1643c			TRUE	0.419	65.000	0.000	NA		NA
5673059	5673060	Spy49_1643c	Spy49_1644c			FALSE	0.064	281.000	0.000	NA		NA
5673060	5673061	Spy49_1644c	Spy49_1646c			FALSE	0.117	161.000	0.000	NA		NA
5673061	5673062	Spy49_1646c	Spy49_1647c			TRUE	0.479	55.000	0.000	NA		NA
5673062	5673063	Spy49_1647c	Spy49_1649c			FALSE	0.034	655.000	0.000	NA		NA
5673064	5673065	Spy49_1651	Spy49_1652			TRUE	0.373	72.000	0.000	NA		NA
5673065	5673066	Spy49_1652	Spy49_1653		papB	FALSE	0.155	126.000	0.000	NA		NA
5673066	5673067	Spy49_1653	Spy49_1654	papB	trpG	TRUE	0.876	33.000	0.009	1.000	Y	NA
5673067	5673068	Spy49_1654	Spy49_1655	trpG		TRUE	0.659	33.000	0.035	1.000	N	NA
5673068	5673069	Spy49_1655	Spy49_tRNAlys3			FALSE	0.062	286.000	0.000	NA		NA
5673069	5673070	Spy49_tRNAlys3	Spy49_1656		pai1	FALSE	0.130	140.000	0.000	NA		NA
5673070	5673071	Spy49_1656	Spy49_1657	pai1		TRUE	0.519	35.000	0.000	1.000		NA
5673072	5673073	Spy49_1658c	Spy49_1659c			TRUE	0.863	10.000	0.000	NA		NA
5673074	5673075	Spy49_1660	Spy49_1661	dppA	dppB	TRUE	0.786	113.000	0.000	0.025	Y	NA
5673075	5673076	Spy49_1661	Spy49_1662	dppB	dppC	TRUE	1.000	-3.000	1.000	0.025	Y	NA
5673076	5673077	Spy49_1662	Spy49_1663	dppC	dppD	TRUE	0.986	12.000	0.333	1.000	Y	NA
5673077	5673078	Spy49_1663	Spy49_1664	dppD	dppF	TRUE	0.999	-16.000	0.750	0.023	Y	NA
5673079	5673080	Spy49_1665c	Spy49_1666c			FALSE	0.112	169.000	0.000	NA		NA
5673080	5673081	Spy49_1666c	Spy49_1667c		lmb	TRUE	0.989	13.000	0.800	NA		NA
5673081	5673082	Spy49_1667c	Spy49_1668c	lmb		FALSE	0.054	236.000	0.000	1.000		NA
5673082	5673083	Spy49_1668c	Spy49_1669c		scpA	FALSE	0.260	251.000	0.000	0.060		NA
5673083	5673084	Spy49_1669c	Spy49_1670c	scpA	ennX	FALSE	0.201	335.000	0.000	0.060		NA
5673084	5673085	Spy49_1670c	Spy49_1671c	ennX	emm49	TRUE	0.468	210.000	0.000	0.008		NA
5673085	5673086	Spy49_1671c	Spy49_1672c	emm49		TRUE	0.443	225.000	0.000	0.008		NA
5673086	5673087	Spy49_1672c	Spy49_1673c		mga	FALSE	0.097	190.000	0.000	NA		NA
5673087	5673088	Spy49_1673c	Spy49_1674c	mga		FALSE	0.034	676.000	0.000	NA		NA
5673088	5673089	Spy49_1674c	Spy49_1675c		isp1	TRUE	0.938	78.000	1.000	NA		NA
5673089	5673090	Spy49_1675c	Spy49_1676c	isp1		TRUE	0.493	102.000	0.200	1.000		NA
5673090	5673091	Spy49_1676c	Spy49_1677c			TRUE	0.997	-3.000	0.500	1.000	Y	NA
5673091	5673092	Spy49_1677c	Spy49_1678c			TRUE	0.544	94.000	0.267	1.000	N	NA
5673092	5673093	Spy49_1678c	Spy49_1679c			TRUE	0.989	13.000	0.467	1.000	Y	NA
5673093	5673094	Spy49_1679c	Spy49_1680c			TRUE	0.984	-13.000	0.385	NA	N	NA
5673094	5673095	Spy49_1680c	Spy49_1681c			FALSE	0.236	424.000	0.333	NA		NA
5673095	5673096	Spy49_1681c	Spy49_1682c			TRUE	0.668	27.000	0.000	NA		NA
5673096	5673097	Spy49_1682c	Spy49_1683c		sfbX49	FALSE	0.127	142.000	0.000	NA		NA
5673097	5673098	Spy49_1683c	Spy49_1684c	sfbX49	sof	TRUE	0.512	180.000	0.000	0.008		NA
5673100	5673101	Spy49_1687c	Spy49_1688c	ropA		TRUE	0.638	32.000	0.000	NA		NA
5673101	5673102	Spy49_1688c	Spy49_1689c			FALSE	0.199	108.000	0.000	NA		NA
5673102	5673103	Spy49_1689c	Spy49_1690c		speB	TRUE	0.993	2.000	0.000	0.001		NA
5673106	5673107	Spy49_1693	Spy49_1694			FALSE	0.121	153.000	0.000	NA		NA
5673108	5673109	Spy49_1695c	Spy49_1696c	gldA	mipB	TRUE	0.721	57.000	0.211	1.000	N	NA
5673109	5673110	Spy49_1696c	Spy49_1697c	mipB	pflD	TRUE	0.958	13.000	0.368	1.000	N	NA
5673110	5673111	Spy49_1697c	Spy49_1698c	pflD		FALSE	0.149	211.000	0.132	1.000	N	NA
5673111	5673112	Spy49_1698c	Spy49_1699c			TRUE	0.999	10.000	0.889	0.013	Y	NA
5673112	5673113	Spy49_1699c	Spy49_1700c			TRUE	0.998	28.000	0.889	0.013	Y	NA
5673113	5673114	Spy49_1700c	Spy49_1701c			FALSE	0.090	287.000	0.091	1.000	N	NA
5673114	5673115	Spy49_1701c	Spy49_1702c			TRUE	0.969	16.000	0.188	1.000	Y	NA
5673117	5673118	Spy49_1704c	Spy49_1705c		rpmG1	TRUE	0.855	14.000	0.080	1.000	N	NA
5673118	5673119	Spy49_1705c	Spy49_1706c	rpmG1	pbp2A	TRUE	0.632	49.000	0.111	1.000	N	NA
5673119	5673120	Spy49_1706c	Spy49_1707c	pbp2A		TRUE	0.700	39.000	0.062	NA	N	NA
5673121	5673122	Spy49_1708	Spy49_1709			TRUE	0.928	-106.000	0.056	NA		NA
5673125	5673126	Spy49_1714c	Spy49_1715c		groEL	FALSE	0.083	160.000	0.000	1.000		NA
5673126	5673127	Spy49_1715c	Spy49_1716c	groEL	groES	TRUE	0.921	36.000	0.160	1.000	Y	NA
5673127	5673128	Spy49_1716c	Spy49_1717c	groES	clpC	TRUE	0.366	178.000	0.036	1.000	Y	NA
5673128	5673129	Spy49_1717c	Spy49_1718c	clpC	ctsR	TRUE	0.977	0.000	0.188	NA	N	NA
5673129	5673130	Spy49_1718c	Spy49_1719c	ctsR	csp	TRUE	0.363	196.000	0.013	NA	Y	NA
5673130	5673131	Spy49_1719c	Spy49_tRNAcys1	csp		FALSE	0.037	524.000	0.000	NA		NA
5673131	5673132	Spy49_tRNAcys1	Spy49_1720c			FALSE	0.124	147.000	0.000	NA		NA
5673133	5673134	Spy49_1721	Spy49_1722	ahpC	nox3	TRUE	0.984	21.000	0.551	1.000	Y	NA
5673136	5673137	Spy49_1724	Spy49_1725	hutU		TRUE	0.689	88.000	0.086	1.000	Y	NA
5673137	5673138	Spy49_1725	Spy49_1726			TRUE	0.975	11.000	0.143	1.000	Y	NA
5673138	5673139	Spy49_1726	Spy49_1727		fhs2	TRUE	0.780	18.000	0.038	1.000	N	NA
5673139	5673140	Spy49_1727	Spy49_1728	fhs2		TRUE	0.842	21.000	0.038	NA		NA
5673140	5673141	Spy49_1728	Spy49_1729			FALSE	0.170	220.000	0.062	NA		NA
5673141	5673142	Spy49_1729	Spy49_1730		hutH	TRUE	0.951	12.000	0.006	1.000	Y	NA
5673142	5673143	Spy49_1730	Spy49_1731	hutH	hutG	TRUE	0.749	187.000	0.000	0.002	Y	NA
5673145	5673146	Spy49_1733	Spy49_1734	rpsB	tsf	TRUE	0.849	134.000	0.748	1.000	Y	NA
5673147	5673148	Spy49_1735c	Spy49_1736c	pepO	dexS	FALSE	0.035	208.000	0.000	1.000	N	NA
5673148	5673149	Spy49_1736c	Spy49_1737c	dexS		TRUE	0.952	67.000	0.650	1.000	Y	NA
5673152	5673153	Spy49_1740	Spy49_1742			TRUE	0.672	42.000	0.007	NA		NA
5673154	5673155	Spy49_1743c	Spy49_1744c	nrdG		TRUE	0.974	0.000	0.159	1.000		NA
5673155	5673156	Spy49_1744c	Spy49_1745c			TRUE	0.922	9.000	0.041	1.000		NA
5673156	5673157	Spy49_1745c	Spy49_1746c			TRUE	0.801	29.000	0.041	NA		NA
5673157	5673158	Spy49_1746c	Spy49_1747c		nrdD	FALSE	0.205	182.000	0.062	NA		NA
5673158	5673159	Spy49_1747c	Spy49_1748c	nrdD		TRUE	0.403	97.000	0.057	NA		NA
5673159	5673160	Spy49_1748c	Spy49_1749c			FALSE	0.042	413.000	0.000	NA		NA
5673160	5673161	Spy49_1749c	Spy49_1750c			TRUE	0.987	12.000	0.651	NA		NA
5673161	5673162	Spy49_1750c	Spy49_1751c			TRUE	0.994	-3.000	0.537	NA		NA
5673162	5673163	Spy49_1751c	Spy49_1752c			TRUE	0.320	114.000	0.032	NA		NA
5673163	5673164	Spy49_1752c	Spy49_1753c		recA	FALSE	0.046	291.000	0.004	1.000	N	NA
5673164	5673165	Spy49_1753c	Spy49_1754c	recA	cinA	TRUE	0.427	88.000	0.083	1.000		NA
5673165	5673166	Spy49_1754c	Spy49_1755c	cinA	tag	TRUE	0.453	69.000	0.011	1.000		NA
5673166	5673167	Spy49_1755c	Spy49_1756c	tag	ruvA	TRUE	0.964	10.000	0.012	1.000	Y	NA
5673167	5673168	Spy49_1756c	Spy49_1757c	ruvA	lmrP	TRUE	0.946	2.000	0.005	NA		NA
5673168	5673169	Spy49_1757c	Spy49_1758c	lmrP	mutL	TRUE	0.896	11.000	0.006	NA		NA
5673169	5673170	Spy49_1758c	Spy49_1759c	mutL	mutS	TRUE	0.929	130.000	0.220	0.002	Y	NA
5673170	5673171	Spy49_1759c	Spy49_1761c	mutS		FALSE	0.044	336.000	0.008	1.000	N	NA
5673172	5673173	Spy49_1762	Spy49_1763	argS		TRUE	0.439	88.000	0.032	NA		NA
5673174	5673175	Spy49_1764c	Spy49_1765c			TRUE	0.952	43.000	0.667	NA		NA
5673175	5673176	Spy49_1765c	Spy49_1767c			TRUE	0.959	-37.000	0.156	NA		NA
5673176	5673177	Spy49_1767c	Spy49_1768c		aspS	TRUE	0.958	-7.000	0.016	NA		NA
5673177	5673178	Spy49_1768c	Spy49_1769c	aspS	hisS	TRUE	0.626	338.000	0.161	0.044	Y	NA
5673179	5673180	Spy49_1770	Spy49_1771	rpmF	rpmG2	TRUE	0.986	16.000	0.012	0.031	Y	NA
5673182	5673183	Spy49_1773	Spy49_1774	cadD	cadX	TRUE	0.990	12.000	0.875	NA	N	NA
5673183	5673184	Spy49_1774	Spy49_1775	cadX		TRUE	0.929	44.000	0.571	1.000		NA
5673184	5673185	Spy49_1775	Spy49_1777			TRUE	0.947	66.000	0.400	0.050		NA
5673185	5673186	Spy49_1777	Spy49_1778			TRUE	0.998	-3.000	1.000	NA		NA
5673186	5673187	Spy49_1778	Spy49_1779			FALSE	0.030	1211.000	0.000	NA		NA
5673189	5673190	Spy49_1781	Spy49_1782			TRUE	0.983	-13.000	0.300	NA		NA
5673190	5673191	Spy49_1782	Spy49_1783			TRUE	0.990	-3.000	0.350	NA		NA
5673194	5673195	Spy49_1786c	Spy49_1787c	rpsD		FALSE	0.032	729.000	0.000	NA		NA
5673195	5673196	Spy49_1787c	Spy49_1788c		dnaC	TRUE	0.871	17.000	0.030	NA		NA
5673196	5673197	Spy49_1788c	Spy49_1789c	dnaC	rplI	TRUE	0.745	30.000	0.100	1.000	N	NA
5673197	5673198	Spy49_1789c	Spy49_1790c	rplI		TRUE	0.959	-3.000	0.119	1.000	N	NA
5673198	5673199	Spy49_1790c	Spy49_1791c		gidA	FALSE	0.242	90.000	0.011	1.000	N	NA
5673199	5673200	Spy49_1791c	Spy49_1792c	gidA		FALSE	0.178	124.000	0.005	1.000		NA
5673200	5673201	Spy49_1792c	Spy49_1793c		trmU	FALSE	0.035	775.000	0.003	1.000		NA
5673202	5673203	Spy49_1794	Spy49_1795	sdhB	sdhA	TRUE	0.998	12.000	0.221	0.001	Y	NA
5673204	5673205	Spy49_1796c	Spy49_1797c			FALSE	0.032	372.000	0.000	1.000		NA
5673205	5673206	Spy49_1797c	Spy49_1798c			TRUE	0.988	-7.000	0.136	1.000	Y	NA
5673206	5673207	Spy49_1798c	Spy49_1799c			TRUE	0.999	-24.000	0.713	0.022	Y	NA
5673207	5673208	Spy49_1799c	Spy49_1800c		pgsA	TRUE	0.859	-49.000	0.015	1.000	N	NA
5673208	5673209	Spy49_1800c	Spy49_1801c	pgsA		TRUE	0.888	14.000	0.077	1.000		NA
5673209	5673210	Spy49_1801c	Spy49_1802c			TRUE	0.740	50.000	0.156	1.000		NA
5673210	5673211	Spy49_1802c	Spy49_1803c			TRUE	0.999	2.000	0.872	0.004		NA
5673212	5673213	Spy49_1804	Spy49_1806	hasA	hasB	TRUE	0.884	36.000	0.048	1.000	Y	NA
5673213	5673214	Spy49_1806	Spy49_1808	hasB	hasC	FALSE	0.246	182.000	0.000	1.000	Y	NA
5673214	5673215	Spy49_1808	Spy49_1809	hasC		FALSE	0.039	308.000	0.000	1.000		NA
5673215	5673216	Spy49_1809	Spy49_1810		recF	TRUE	0.977	2.000	0.209	1.000		NA
5673217	5673218	Spy49_1811c	Spy49_1812c		guaB	FALSE	0.036	203.000	0.000	1.000	N	NA
5673218	5673219	Spy49_1812c	Spy49_1813c	guaB	trsA	FALSE	0.039	308.000	0.002	1.000	N	NA
5673220	5673221	Spy49_1814	Spy49_1815			TRUE	0.505	79.000	0.027	NA		NA
5673221	5673222	Spy49_1815	Spy49_1817			TRUE	0.386	98.000	0.040	NA		NA
5673223	5673224	Spy49_tRNAasn3	Spy49_tRNAglu3			TRUE	0.623	34.000	0.000	NA		NA
5673227	5673228	Spy49_1821	Spy49_1822	degP	parB	TRUE	0.450	59.000	0.015	1.000	N	NA
5673228	5671438	Spy49_1822	Spy49_0001	parB	dnaA	FALSE	0.055	233.000	0.002	1.000	N	NA