MicrobesOnline Operon Predictions for Chlamydia trachomatis 434/Bu

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 3793898 3793899 CTL0002 CTL0003 nqrA   TRUE 0.834 22.000 0.086 NA   NA
 3793902 3793903 CTL0005 CTL0006 aspC   TRUE 0.801 -25.000 0.005 1.000 N NA
 3793904 3793905 CTL0007 CTL0008 recB recC TRUE 0.995 2.000 0.542 0.006 Y NA
 3793909 3793910 CTL0012 CTL0013     TRUE 0.694 -21.000 0.005 1.000   NA
 3793911 3793912 CTL0014 CTL0015     TRUE 0.948 0.000 1.000 NA   NA
 3793912 3793913 CTL0015 CTL0016     TRUE 0.887 -9.000 0.429 NA   NA
 3793913 3793914 CTL0016 CTL0017     TRUE 0.807 3.000 0.006 NA   NA
 3793914 3793915 CTL0017 CTL0018   recA FALSE 0.145 260.000 0.000 1.000 N NA
 3793915 3793916 CTL0018 CTL0019 recA   FALSE 0.059 286.000 0.000 1.000   NA
 3793916 3793917 CTL0019 CTL0020   recD TRUE 0.913 -3.000 0.023 1.000   NA
 3793917 3793918 CTL0020 CTL0021 recD   FALSE 0.305 66.000 0.008 NA   NA
 3793919 3793920 CTL0022 CTL0023     TRUE 0.855 9.000 0.009 NA   NA
 3793920 3793921 CTL0023 CTL0024   kdsA TRUE 0.849 -3.000 0.011 NA   NA
 3793922 3793923 CTL_t03 CTL0025 tRNA-Arg   FALSE 0.014 107.000 0.000 NA   NA
 3793923 3793924 CTL0025 CTL0026     TRUE 0.948 0.000 1.000 NA   NA
 3793924 3793925 CTL0026 CTL0027   sfhB FALSE 0.115 82.000 0.002 NA   NA
 3793925 3793926 CTL0027 CTL0028 sfhB   FALSE 0.359 100.000 0.004 0.055   NA
 3793927 3793928 CTL0029 CTL0030 gyrA2 gyrB TRUE 0.992 15.000 0.110 0.006 Y NA
 3793929 3793930 CTL0031 CTL0032 hemA sycE FALSE 0.067 712.000 0.000 1.000   NA
 3793930 3793931 CTL0032 CTL0033 sycE   TRUE 0.923 4.000 0.146 NA   NA
 3793931 3793932 CTL0033 CTL0034     TRUE 0.631 44.000 0.171 NA   NA
 3793932 3793933 CTL0034 CTL0035     TRUE 0.856 27.000 0.857 NA   NA
 3793933 3793934 CTL0035 CTL0036     FALSE 0.174 19.000 0.000 NA   NA
 3793934 3793935 CTL0036 CTL0037     FALSE 0.164 20.000 0.000 NA   NA
 3793935 3793936 CTL0037 CTL0038   sctN TRUE 0.948 2.000 0.857 NA   NA
 3793936 3793937 CTL0038 CTL0039 sctN   TRUE 0.889 23.000 0.875 NA   NA
 3793937 3793938 CTL0039 CTL0040     TRUE 0.947 4.000 0.750 NA   NA
 3793938 3793939 CTL0040 CTL0041   sctQ TRUE 0.931 10.000 0.600 NA   NA
 3793939 3793940 CTL0041 CTL0042 sctQ pkn5 TRUE 0.469 135.000 0.583 1.000 N NA
 3793940 3793941 CTL0042 CTL0043 pkn5   TRUE 0.957 -3.000 0.208 1.000 N NA
 3793941 3793942 CTL0043 CTL_t31   tRNA-Thr FALSE 0.010 134.000 0.000 NA   NA
 3793943 3793944 CTL0044 CTL0045 aspC   TRUE 0.926 -10.000 0.848 1.000   NA
 3793944 3793945 CTL0045 CTL_t20   tRNA-Lys FALSE 0.014 105.000 0.000 NA   NA
 3793945 3793946 CTL_t20 CTL_t10 tRNA-Lys tRNA-Glu FALSE 0.189 17.000 0.000 NA   NA
 3793946 3793947 CTL_t10 CTL0046 tRNA-Glu rrf FALSE 0.015 103.000 0.000 NA   NA
 3793947 3793948 CTL0046 CTL0047 rrf pyrH TRUE 0.965 -3.000 0.626 1.000 N NA
 3793948 3793949 CTL0047 CTL0048 pyrH tsf TRUE 0.961 13.000 0.416 1.000 N NA
 3793949 3793950 CTL0048 CTL0049 tsf rpsB TRUE 0.989 -3.000 0.748 1.000 Y NA
 3793950 3793951 CTL0049 CTL_t11 rpsB tRNA-Gly FALSE 0.020 83.000 0.000 NA   NA
 3793951 3793952 CTL_t11 CTL0050 tRNA-Gly ompA FALSE 0.010 231.000 0.000 NA   NA
 3793953 3793954 CTL0051 CTL0052 pbpB   TRUE 0.619 64.000 0.400 1.000   NA
 3793954 3793955 CTL0052 CTL0053     FALSE 0.061 342.000 0.000 1.000   NA
 3793955 3793956 CTL0053 CTL0054     TRUE 0.990 3.000 0.466 1.000 Y NA
 3793956 3793957 CTL0054 CTL0055     TRUE 0.990 4.000 0.482 1.000 Y NA
 3793957 3793958 CTL0055 CTL0056   sufS TRUE 0.943 -7.000 0.193 1.000 N NA
 3793958 3793959 CTL0056 CTL0057 sufS parB FALSE 0.217 136.000 0.002 1.000 N NA
 3793960 3793961 CTL0058 CTL0059 dppF dppD TRUE 0.962 -7.000 0.250 0.006   NA
 3793962 3793963 CTL0060 CTL0061     TRUE 0.951 3.000 0.937 NA   NA
 3793963 3793964 CTL0061 CTL0062   pgk FALSE 0.135 139.000 0.005 1.000   NA
 3793964 3793965 CTL0062 CTL0063 pgk   FALSE 0.010 260.000 0.000 NA   NA
 3793965 3793966 CTL0063 CTL0064     TRUE 0.630 51.000 0.333 NA   NA
 3793966 3793967 CTL0064 CTL0065     TRUE 0.500 86.000 1.000 NA   NA
 3793968 3793969 CTL0066 CTL0067 nth trmE TRUE 0.896 7.000 0.007 1.000   NA
 3793970 3793971 CTL0068 CTL0069 psdD   TRUE 0.540 65.000 0.052 1.000   NA
 3793971 3793972 CTL0069 CTL0070   secA FALSE 0.235 259.000 0.015 1.000   NA
 3793973 3793974 CTL0071 CTL0072   engA FALSE 0.167 77.000 0.005 NA   NA
 3793974 3793975 CTL0072 CTL0073 engA pcnB FALSE 0.185 116.000 0.006 1.000   NA
 3793975 3793976 CTL0073 CTL0074 pcnB clpX TRUE 0.901 15.000 0.006 1.000 N NA
 3793976 3793977 CTL0074 CTL0075 clpX clpP TRUE 0.988 10.000 0.352 1.000 Y NA
 3793977 3793978 CTL0075 CTL0076 clpP tig TRUE 0.698 167.000 0.351 1.000 Y NA
 3793978 3793979 CTL0076 CTL_t12 tig tRNA-Gly FALSE 0.073 37.000 0.000 NA   NA
 3793980 3793981 CTL0077 CTL0078   mreB TRUE 0.949 5.000 0.009 1.000 N NA
 3793981 3793982 CTL0078 CTL0079 mreB pckA TRUE 0.938 -3.000 0.011 1.000 N NA
 3793982 3793983 CTL0079 CTL0080 pckA   FALSE 0.227 112.000 0.026 NA   NA
 3793983 3793984 CTL0080 CTL0081     TRUE 0.864 27.000 1.000 NA   NA
 3793985 10750536 CTL0082 CTL0082a ompB   FALSE 0.089 -77.000 0.000 NA   NA
 10750536 3793986 CTL0082a CTL0083   gpdA FALSE 0.010 134.000 0.000 NA   NA
 3793986 3793987 CTL0083 CTL0084 gpdA   TRUE 0.951 -3.000 0.044 1.000 N NA
 3793987 3793988 CTL0084 CTL0085     TRUE 0.891 12.000 0.044 NA   NA
 3793988 3793989 CTL0085 CTL0086   fliI TRUE 0.900 -7.000 0.500 NA   NA
 3793989 3793990 CTL0086 CTL0087 fliI   TRUE 0.513 74.000 0.667 NA   NA
 3793990 3793991 CTL0087 CTL0088   fliF TRUE 0.938 5.000 0.500 NA   NA
 3793991 3793992 CTL0088 CTL0089 fliF   FALSE 0.337 274.000 0.136 NA N NA
 3793992 3793993 CTL0089 CTL0090     TRUE 0.955 -3.000 0.138 1.000 N NA
 3793993 3793994 CTL0090 CTL0091   pgmA TRUE 0.856 -45.000 0.021 1.000 N NA
 3793995 3793996 CTL0092 CTL0093     FALSE 0.248 119.000 0.080 NA   NA
 3793996 3793997 CTL0093 CTL0094   birA TRUE 0.775 27.000 0.061 NA   NA
 3793998 3793999 CTL0095 CTL0096     TRUE 0.669 92.000 0.078 0.069 N NA
 3793999 3794000 CTL0096 CTL0097     TRUE 0.785 24.000 0.026 NA   NA
 3794000 3794001 CTL0097 CTL0098   serS TRUE 0.682 37.000 0.057 NA   NA
 3794002 3794003 CTL0099 CTL0100 ribD ribA TRUE 0.795 110.000 0.007 0.006 Y NA
 3794003 3794004 CTL0100 CTL0101 ribA ribH TRUE 0.970 -31.000 0.006 0.006 Y NA
 3794006 3794007 CTL0103 CTL0104   dagA FALSE 0.325 105.000 0.316 NA   NA
 3794007 3794008 CTL0104 CTL0105 dagA   TRUE 0.575 58.000 0.316 NA   NA
 3794009 3794010 CTL0106 CTL0107     TRUE 0.906 -3.000 0.016 1.000   NA
 3794010 3794011 CTL0107 CTL0108   ftsK TRUE 0.926 4.000 0.016 1.000   NA
 3794011 3794012 CTL0108 CTL_t13 ftsK tRNA-His FALSE 0.009 180.000 0.000 NA   NA
 3794013 3794014 CTL_r01 CTL_r03 16S_rRNA 23S_rRNA FALSE 0.010 316.000 0.000 NA   NA
 3794014 3794015 CTL_r03 CTL_r05 23S_rRNA 5S_rRNA FALSE 0.011 121.000 0.000 NA   NA
 3794016 3794017 CTL0109 CTL0110 dmpP   FALSE 0.212 143.000 0.007 NA N NA
 3794017 3794018 CTL0110 CTL0111     FALSE 0.281 105.000 0.007 NA N NA
 3794018 3794019 CTL0111 CTL0112   hctA FALSE 0.261 188.000 0.048 1.000   NA
 3794021 3794022 CTL0114 CTL0115 hemG hemN TRUE 0.993 -3.000 0.057 0.006 Y NA
 3794022 3794023 CTL0115 CTL0116 hemN hemE TRUE 0.978 -27.000 0.012 0.006 Y NA
 3794023 3794024 CTL0116 CTL0117 hemE mfd TRUE 0.917 13.000 0.006 1.000 N NA
 3794024 3794025 CTL0117 CTL0118 mfd alaS TRUE 0.827 -24.000 0.006 1.000 N NA
 3794026 3794027 CTL_r02 CTL_r04 16S_rRNA 23S_rRNA FALSE 0.010 316.000 0.000 NA   NA
 3794027 3794028 CTL_r04 CTL_r06 23S_rRNA 5S_rRNA FALSE 0.011 121.000 0.000 NA   NA
 3794028 3794029 CTL_r06 CTL0119 5S_rRNA tktB FALSE 0.010 278.000 0.000 NA   NA
 3794032 3794033 CTL0122 CTL0123     TRUE 0.576 47.000 0.054 NA   NA
 3794033 3794034 CTL0123 CTL0124   groEL FALSE 0.429 81.000 0.027 1.000   NA
 3794034 3794035 CTL0124 CTL_t08 groEL tRNA-Cys FALSE 0.023 78.000 0.000 NA   NA
 3794036 3794037 CTL0125 CTL0126 murF mraY TRUE 0.778 146.000 0.018 0.010 Y NA
 3794037 3794038 CTL0126 CTL0127 mraY murD TRUE 0.994 12.000 0.647 0.010 Y NA
 3794038 3794039 CTL0127 CTL0128 murD nlpD TRUE 0.976 -3.000 0.006 1.000 Y NA
 3794039 3794040 CTL0128 CTL0129 nlpD ftsW TRUE 0.944 16.000 0.088 1.000 N NA
 3794040 3794041 CTL0129 CTL0130 ftsW murG TRUE 0.848 -91.000 0.037 1.000 N NA
 3794041 3794042 CTL0130 CTL0131 murG murC TRUE 0.989 5.000 0.270 1.000 Y NA
 3794043 3794044 CTL0132 CTL0133     FALSE 0.070 158.000 0.005 NA   NA
 3794045 3794046 CTL0134 CTL0135 rbsV miaA TRUE 0.961 4.000 0.040 1.000 N NA
 3794048 3794049 CTL0137 CTL0138     FALSE 0.011 454.000 0.000 NA   NA
 3794049 3794050 CTL0138 CTL0139   fabF TRUE 0.830 11.000 0.008 NA   NA
 3794050 3794051 CTL0139 CTL0140 fabF   TRUE 0.961 -3.000 0.333 1.000 N NA
 3794055 3794056 CTL0144 CTL0145   aas TRUE 0.992 8.000 0.032 0.051 Y NA
 3794056 3794057 CTL0145 CTL0146 aas bioF TRUE 0.782 43.000 0.032 1.000 N NA
 3794058 3794059 CTL0147 CTL0148 priA   TRUE 0.585 -45.000 0.007 NA   NA
 3794060 3794061 CTL0149 CTL0150   lysS FALSE 0.056 232.000 0.000 1.000   NA
 3794064 3794065 CTL0153 CTL0153A rnpA rnpA TRUE 0.948 13.000 0.787 1.000   NA
 3794066 3794067 CTL0154 CTL0155 rpmJ rpsN TRUE 0.901 24.000 0.013 0.061   NA
 3794068 3794069 CTL0156 CTL0157     FALSE 0.011 122.000 0.000 NA   NA
 3794071 3794072 CTL0159 CTL0160 uvrC mutS TRUE 0.726 82.000 0.006 1.000 Y NA
 3794073 3794074 CTL0161 CTL0162   dnaG FALSE 0.279 2.000 0.000 NA   NA
 3794074 3794075 CTL0162 CTL0163 dnaG   TRUE 0.450 85.000 0.625 NA   NA
 3794075 3794076 CTL0163 CTL0164     FALSE 0.277 126.000 0.333 NA   NA
 3794080 3794081 CTL_t09 CTL0168 tRNA-Gln rplY FALSE 0.010 277.000 0.000 NA   NA
 3794081 3794082 CTL0168 CTL0169 rplY pth TRUE 0.993 8.000 0.496 0.091 Y NA
 3794082 3794083 CTL0169 CTL0170 pth rpsF TRUE 0.749 138.000 0.029 0.091 Y NA
 3794083 3794084 CTL0170 CTL0171 rpsF rpsR TRUE 0.990 17.000 0.319 0.060 Y NA
 3794084 3794085 CTL0171 CTL0172 rpsR rplI TRUE 0.988 21.000 0.499 0.060 Y NA
 3794085 3794086 CTL0172 CTL0173 rplI ispE TRUE 0.568 64.000 0.007 1.000 N NA
 3794087 3794088 CTL0174 CTL0175   ptr FALSE 0.228 179.000 0.250 NA   NA
 3794088 3794089 CTL0175 CTL0176 ptr plsB FALSE 0.226 52.000 0.000 1.000   NA
 3794089 3794090 CTL0176 CTL0177 plsB cafE TRUE 0.906 13.000 0.019 1.000   NA
 3794091 3794092 CTL0178 CTL0179     FALSE 0.093 -60.000 0.000 NA   NA
 3794092 3794093 CTL0179 CTL0181   rpmF FALSE 0.137 -16.000 0.000 NA   NA
 3794093 3794094 CTL0181 CTL0182 rpmF plsX TRUE 0.936 22.000 0.418 1.000 N NA
 3794094 3794095 CTL0182 CTL0183 plsX pmpD FALSE 0.131 220.000 0.005 1.000   NA
 3794095 3794096 CTL0183 CTL0184 pmpD   FALSE 0.009 201.000 0.000 NA   NA
 3794097 3794098 CTL0185 CTL0186     TRUE 0.904 21.000 1.000 NA   NA
 3794099 3794100 CTL0187 CTL0188   glmS TRUE 0.951 11.000 0.030 1.000 N NA
 3794100 3794101 CTL0188 CTL0189 glmS tyrP FALSE 0.297 103.000 0.003 1.000 N NA
 3794101 3794102 CTL0189 CTL0190 tyrP   TRUE 0.859 183.000 1.000 0.006 Y NA
 3794102 3794103 CTL0190 CTL0191     TRUE 0.670 42.000 0.250 NA   NA
 3794105 3794106 CTL0193 CTL0194 sucC sucD TRUE 0.993 15.000 0.467 0.003 Y NA
 3794106 3794107 CTL0194 CTL0195 sucD htrA FALSE 0.394 139.000 0.069 1.000 N NA
 3794107 3794108 CTL0195 CTL0196 htrA   FALSE 0.188 201.000 0.000 0.036   NA
 3794109 3794110 CTL0197 CTL0198 rmuC pssA TRUE 0.880 4.000 0.011 NA   NA
 3794111 3794112 CTL0199 CTL0200 nrdA nrdB TRUE 0.977 38.000 0.564 0.003 Y NA
 3794112 3794113 CTL0200 CTL0201 nrdB trmB FALSE 0.194 260.000 0.008 1.000   NA
 3794116 3794117 CTL0203 CTL0204 murB nusB FALSE 0.311 133.000 0.008 1.000 N NA
 3794118 3794119 CTL0205 CTL0206 infC rpmI TRUE 0.980 -13.000 0.652 1.000 Y NA
 3794119 3794120 CTL0206 CTL0207 rpmI rplT TRUE 0.991 19.000 0.928 0.060 Y NA
 3794120 3794121 CTL0207 CTL0208 rplT pheS TRUE 0.988 7.000 0.202 1.000 Y NA
 3794121 3794122 CTL0208 CTL_t27 pheS tRNA-Ser FALSE 0.273 1.000 0.000 NA   NA
 3794122 3794123 CTL_t27 CTL0209 tRNA-Ser   FALSE 0.010 226.000 0.000 NA   NA
 3794124 3794125 CTL0210 CTL0211     TRUE 0.975 3.000 0.631 0.065   NA
 3794126 3794127 CTL0212 CTL0213 tilS ftsH FALSE 0.392 161.000 0.145 1.000 N NA
 3794128 3794129 CTL0214 CTL0215 pnp rpsO TRUE 0.965 29.000 0.335 1.000 Y NA
 3794130 3794131 CTL0216 CTL0217     TRUE 0.652 32.000 0.013 NA   NA
 3794132 3794133 CTL0218 CTL0219     FALSE 0.337 135.000 1.000 NA   NA
 3794133 3794134 CTL0219 CTL0220     TRUE 0.938 13.000 1.000 NA   NA
 3794134 3794135 CTL0220 CTL0221     TRUE 0.854 28.000 1.000 NA   NA
 3794136 3794137 CTL0222 CTL0223     TRUE 0.893 19.000 0.571 NA   NA
 3794138 3794139 CTL0224 CTL0225 map   TRUE 0.848 33.000 0.429 NA N NA
 3794139 3794140 CTL0225 CTL0226     TRUE 0.973 17.000 0.042 NA Y NA
 3794140 3794141 CTL0226 CTL0227     FALSE 0.272 195.000 0.020 NA N NA
 3794143 3794144 CTL0231 CTL0231A     FALSE 0.010 231.000 0.000 NA   NA
 3794144 3794145 CTL0231A CTL0231B     FALSE 0.063 40.000 0.000 NA   NA
 3794146 3794147 CTL0232 CTL0233   cpa FALSE 0.395 110.000 0.400 1.000   NA
 3794147 3794148 CTL0233 CTL0234 cpa ispH TRUE 0.464 95.000 0.400 1.000   NA
 3794149 3794150 CTL0235 CTL0236 copD2 copB2 TRUE 0.941 12.000 1.000 NA   NA
 3794150 3794151 CTL0236 CTL0237 copB2 lcrH TRUE 0.843 28.000 0.833 NA   NA
 3794151 3794152 CTL0237 CTL0238 lcrH   TRUE 0.816 -78.000 0.833 NA   NA
 3794155 3794156 CTL0244 CTL0245   glgB TRUE 0.916 15.000 0.636 NA   NA
 3794157 3794158 CTL0246 CTL0247     FALSE 0.241 223.000 0.000 0.003   NA
 3794158 3794159 CTL0247 CTL0248   pmpE FALSE 0.348 177.000 0.667 1.000   NA
 3794159 3794160 CTL0248 CTL0249 pmpE pmpF TRUE 0.979 3.000 0.667 0.017   NA
 3794161 3794162 CTL0250 CTL0251 pmpG pmpH TRUE 0.934 31.000 1.000 0.017   NA
 3794162 3794163 CTL0251 CTL0252 pmpH   FALSE 0.011 415.000 0.000 NA   NA
 3794167 3794168 CTL0257 CTL0258 gatC gatA TRUE 0.995 12.000 0.643 0.004 Y NA
 3794168 3794169 CTL0258 CTL0259 gatA gatB TRUE 0.995 2.000 0.492 0.004 Y NA
 3794170 3794171 CTL0260 CTL0261     FALSE 0.310 128.000 0.667 NA   NA
 3794175 3794176 CTL0265 CTL0266 htrB   FALSE 0.244 132.000 0.222 NA   NA
 3794176 3794177 CTL0266 CTL0267     TRUE 0.869 -3.000 0.018 NA   NA
 3794178 3794179 CTL0268 CTL0269 cydA cydB TRUE 0.994 12.000 0.622 0.024 Y NA
 3794181 3794182 CTL0271 CTL0272     FALSE 0.290 186.000 0.750 NA   NA
 3794185 3794186 CTL0275 CTL0276 lepB   FALSE 0.243 186.000 0.333 NA   NA
 3794187 3794188 CTL0277 CTL0278 rpmE prfA TRUE 0.514 188.000 0.005 1.000 Y NA
 3794188 3794189 CTL0278 CTL0279 prfA   TRUE 0.962 -16.000 0.009 1.000 Y NA
 3794189 3794190 CTL0279 CTL0280   ffh TRUE 0.906 -3.000 0.005 1.000 N NA
 3794190 3794191 CTL0280 CTL0281 ffh rpsP TRUE 0.945 -9.000 0.361 1.000 N NA
 3794191 3794192 CTL0281 CTL0282 rpsP trmD TRUE 0.980 16.000 0.033 1.000 Y NA
 3794192 3794193 CTL0282 CTL0283 trmD rplS TRUE 0.973 26.000 0.567 1.000 Y NA
 3794193 3794194 CTL0283 CTL0284 rplS rnhB TRUE 0.679 64.000 0.066 1.000 N NA
 3794194 3794195 CTL0284 CTL0285 rnhB gmk TRUE 0.860 -9.000 0.003 1.000 N NA
 3794195 3794196 CTL0285 CTL0286 gmk   TRUE 0.637 -7.000 0.003 NA   NA
 3794196 3794197 CTL0286 CTL0287   metG TRUE 0.852 0.000 0.008 NA   NA
 3794198 3794199 CTL0288 CTL0289 recD   FALSE 0.010 248.000 0.000 NA   NA
 3794201 3794202 CTL0291 CTL0292     FALSE 0.036 61.000 0.000 NA   NA
 3794202 3794203 CTL0292 CTL_t06   tRNA-Asn FALSE 0.031 64.000 0.000 NA   NA
 3794203 3794204 CTL_t06 CTL0293 tRNA-Asn   FALSE 0.031 64.000 0.000 NA   NA
 3794204 3794205 CTL0293 CTL0294   dcd TRUE 0.799 22.000 0.021 NA   NA
 3794206 3794207 CTL0295 CTL0296   ruvB FALSE 0.060 42.000 0.000 NA   NA
 3794207 3794208 CTL0296 CTL0297 ruvB   TRUE 0.843 2.000 0.007 NA   NA
 3794209 3794210 CTL0298 CTL0299     FALSE 0.343 121.000 0.261 1.000   NA
 3794211 3794212 CTL0300 CTL0301 ssb   FALSE 0.355 343.000 0.013 1.000 N NA
 3794212 3794213 CTL0301 CTL0302   hct2 FALSE 0.237 138.000 0.017 1.000   NA
 3794213 3794214 CTL0302 CTL0303 hct2   FALSE 0.293 155.000 0.006 0.051   NA
 3794214 3794215 CTL0303 CTL0304     FALSE 0.280 95.000 0.007 1.000   NA
 3794215 3794216 CTL0304 CTL0305     FALSE 0.269 91.000 0.014 NA   NA
 3794217 3794218 CTL0306 CTL0307     TRUE 0.752 36.000 0.400 NA   NA
 3794218 3794219 CTL0307 CTL0308   hemN FALSE 0.201 61.000 0.002 NA   NA
 3794219 3794220 CTL0308 CTL0309 hemN   TRUE 0.762 -10.000 0.008 NA   NA
 3794221 3794222 CTL0310 CTL0311 sucA sucB TRUE 0.991 4.000 0.667 1.000 Y NA
 3794223 3794224 CTL0312 CTL0313   gcpE TRUE 0.857 9.000 0.009 NA   NA
 3794224 3794225 CTL0313 CTL0314 gcpE   FALSE 0.060 152.000 0.002 NA   NA
 3794225 3794226 CTL0314 CTL0315   fer FALSE 0.379 80.000 0.065 NA   NA
 3794226 3794227 CTL0315 CTL_t26 fer tRNA-Pro FALSE 0.068 38.000 0.000 NA   NA
 3794228 3794229 CTL0316 CTL0317 flhA fliA FALSE 0.432 108.000 0.025 1.000 N NA
 3794229 3794230 CTL0317 CTL0318 fliA tyrS FALSE 0.294 159.000 0.008 1.000 N NA
 3794230 3794231 CTL0318 CTL0319 tyrS gnd TRUE 0.946 10.000 0.014 1.000 N NA
 3794232 3794233 CTL0320 CTL0321 lepA   FALSE 0.195 186.000 0.002 1.000 N NA
 3794233 3794234 CTL0321 CTL0322     FALSE 0.011 351.000 0.000 NA   NA
 3794235 3794236 CTL0323 CTL0324     TRUE 0.987 -7.000 0.898 1.000 Y NA
 3794236 3794237 CTL0324 CTL0325     TRUE 0.984 1.000 0.012 1.000 Y NA
 3794237 3794238 CTL0325 CTL0326     TRUE 0.986 -10.000 0.012 0.005 Y NA
 3794238 3794239 CTL0326 CTL0327   dxr TRUE 0.849 27.000 0.008 1.000 N NA
 3794239 3794240 CTL0327 CTL0328 dxr   FALSE 0.339 196.000 0.568 1.000   NA
 3794241 3794242 CTL0329 CTL0330   recF FALSE 0.100 158.000 0.006 NA   NA
 3794242 3794243 CTL0330 CTL0331 recF dnaN TRUE 0.989 0.000 0.318 1.000 Y NA
 3794245 3794246 CTL0333 CTL0334 apbE folD TRUE 0.958 -30.000 0.025 1.000 Y NA
 3794246 3794247 CTL0334 CTL0335 folD   FALSE 0.246 118.000 0.011 1.000   NA
 3794248 3794249 CTL0336 CTL0337 ltuB   TRUE 0.760 33.000 0.333 NA   NA
 3794249 3794250 CTL0337 CTL0338     TRUE 0.922 10.000 0.333 NA   NA
 3794250 3794251 CTL0338 CTL0338A     TRUE 0.940 -3.000 1.000 NA   NA
 3794252 3794253 CTL0339 CTL0340     FALSE 0.294 171.000 0.038 NA N NA
 3794253 3794254 CTL0340 CTL0341   rpmB FALSE 0.190 120.000 0.005 NA N NA
 3794254 3794255 CTL0341 CTL0342 rpmB malQ FALSE 0.227 149.000 0.005 1.000 N NA
 3794255 3794256 CTL0342 CTL0343 malQ scc1 TRUE 0.957 4.000 0.600 1.000   NA
 3794256 3794257 CTL0343 CTL0344 scc1 copN TRUE 0.881 38.000 0.240 0.011   NA
 3794257 3794258 CTL0344 CTL0345 copN lcrD TRUE 0.905 18.000 0.188 1.000   NA
 3794258 3794259 CTL0345 CTL0346 lcrD sctU TRUE 0.994 0.000 0.219 0.015 Y NA
 3794261 3794262 CTL0348 CTL0349 ribF truB TRUE 0.894 -43.000 0.308 1.000 N NA
 3794262 3794263 CTL0349 CTL0350 truB rbfA TRUE 0.941 38.000 0.111 1.000 Y NA
 3794263 3794264 CTL0350 CTL0351 rbfA infA TRUE 0.990 7.000 0.530 1.000 Y NA
 3794264 3794265 CTL0351 CTL0352 infA nusA TRUE 0.898 -43.000 0.342 1.000 N NA
 3794265 3794266 CTL0352 CTL0353 nusA rpsA TRUE 0.442 118.000 0.006 0.047 N NA
 3794267 3794268 CTL0354 CTL0355 trxB acpS TRUE 0.945 6.000 0.008 1.000 N NA
 3794270 3794271 CTL0357 CTL0358     TRUE 0.691 35.000 0.009 1.000   NA
 3794275 3794276 CTL0362 CTL0363     FALSE 0.226 54.000 0.002 NA   NA
 3794277 3794278 CTL0364 CTL0365   hsp60_1 FALSE 0.276 129.000 0.400 NA   NA
 3794278 3794279 CTL0365 CTL0366 hsp60_1 groES TRUE 0.971 39.000 0.412 0.015 Y NA
 3794279 3794280 CTL0366 CTL0367 groES pepF FALSE 0.394 172.000 0.188 1.000 N NA
 3794281 3794282 CTL0368 CTL0369 clpB   TRUE 0.777 26.000 0.009 1.000   NA
 3794282 3794283 CTL0369 CTL0370   incD FALSE 0.009 186.000 0.000 NA   NA
 3794283 3794284 CTL0370 CTL0371 incD incE TRUE 0.593 67.000 1.000 NA   NA
 3794284 3794285 CTL0371 CTL0372 incE incF TRUE 0.952 5.000 1.000 NA   NA
 3794285 3794286 CTL0372 CTL0373 incF incG TRUE 0.496 87.000 1.000 NA   NA
 3794287 3794288 CTL0374 CTL0375 incA   FALSE 0.011 127.000 0.000 NA   NA
 3794289 3794290 CTL0376 CTL0377 araD efp TRUE 0.873 -13.000 0.007 1.000 N NA
 3794290 3794291 CTL0377 CTL0378 efp accB TRUE 0.953 13.000 0.120 1.000 N NA
 3794291 3794292 CTL0378 CTL0379 accB accC TRUE 0.993 4.000 0.011 0.003 Y NA
 3794292 3794293 CTL0379 CTL0380 accC rplM FALSE 0.140 223.000 0.000 1.000 N NA
 3794293 3794294 CTL0380 CTL0381 rplM rpsI TRUE 0.984 26.000 0.601 0.055 Y NA
 3794295 3794296 CTL0382 CTL0383   adk TRUE 0.468 96.000 0.014 1.000 N NA
 3794297 3794298 CTL0384 CTL0385     TRUE 0.990 -3.000 1.000 1.000 Y NA
 3794299 3794300 CTL0386 CTL0387     TRUE 0.907 -3.000 0.017 1.000   NA
 3794300 3794301 CTL0387 CTL0388     FALSE 0.416 79.000 0.017 1.000   NA
 3794302 3794303 CTL0389 CTL0390     TRUE 0.581 58.000 0.333 NA   NA
 3794303 3794304 CTL0390 CTL0391     FALSE 0.191 90.000 0.007 NA   NA
 3794304 3794305 CTL0391 CTL0392     TRUE 0.623 19.000 0.004 NA   NA
 3794305 3794306 CTL0392 CTL0393     TRUE 0.833 -22.000 0.012 NA N NA
 3794308 3794309 CTL0395 CTL0396     FALSE 0.122 184.000 0.008 NA   NA
 3794309 3794310 CTL0396 CTL_t32   tRNA-Thr FALSE 0.026 69.000 0.000 NA   NA
 3794310 3794311 CTL_t32 CTL_t35 tRNA-Thr tRNA-Tyr FALSE 0.247 11.000 0.000 NA   NA
 3794311 3794312 CTL_t35 CTL0397 tRNA-Tyr   FALSE 0.009 166.000 0.000 NA   NA
 3794312 3794313 CTL0397 CTL0398     TRUE 0.951 2.000 1.000 NA   NA
 3794313 3794314 CTL0398 CTL0399     TRUE 0.948 0.000 1.000 NA   NA
 3794314 3794315 CTL0399 CTL0400   pkn1 FALSE 0.195 186.000 0.044 NA   NA
 3794315 3794316 CTL0400 CTL0401 pkn1 dnlJ TRUE 0.871 11.000 0.006 1.000   NA
 3794316 3794317 CTL0401 CTL0402 dnlJ   FALSE 0.168 98.000 0.006 NA   NA
 3794318 3794319 CTL0403 CTL0404 mhpA   FALSE 0.308 200.000 0.857 NA   NA
 3794320 3794321 CTL0405 CTL0406 rpmG   TRUE 0.578 36.000 0.006 1.000   NA
 3794321 3794322 CTL0406 CTL0407     TRUE 0.991 5.000 0.545 1.000 Y NA
 3794323 3794324 CTL0408 CTL0409     FALSE 0.009 189.000 0.000 NA   NA
 3794324 3794325 CTL0409 CTL0411     FALSE 0.018 93.000 0.000 NA   NA
 3794325 3794326 CTL0411 CTL0413     TRUE 0.637 514.000 0.000 0.022 Y NA
 3794326 3794327 CTL0413 CTL0414     FALSE 0.011 126.000 0.000 NA   NA
 3794327 3794328 CTL0414 CTL0415     FALSE 0.011 608.000 0.000 NA   NA
 3794328 3794329 CTL0415 CTL0417     FALSE 0.191 -7.000 0.000 NA   NA
 3794329 3794330 CTL0417 CTL0418     FALSE 0.010 140.000 0.000 NA   NA
 3794331 3794332 CTL0419 CTL0419A     FALSE 0.044 53.000 0.000 NA   NA
 3794332 3794333 CTL0419A CTL0420     FALSE 0.010 282.000 0.000 NA   NA
 3794333 3794334 CTL0420 CTL0421     FALSE 0.026 69.000 0.000 NA   NA
 3794334 3794335 CTL0421 CTL0422   trpR FALSE 0.041 56.000 0.000 NA   NA
 3794335 3794336 CTL0422 CTL0423 trpR trpB FALSE 0.155 349.000 0.000 1.000 N NA
 3794336 3794337 CTL0423 CTL0424 trpB trpA TRUE 0.991 -7.000 0.146 0.003 Y NA
 3794338 3794339 CTL0425 CTL0426     FALSE 0.023 77.000 0.000 NA   NA
 3794339 3794340 CTL0426 CTL0426A     FALSE 0.050 46.000 0.000 NA   NA
 3794342 3794343 CTL0428 CTL0429 dsbB dsbG TRUE 0.983 -3.000 0.308 NA Y NA
 3794345 3794346 CTL0431 CTL0432     FALSE 0.220 144.000 0.111 NA   NA
 3794346 3794347 CTL0432 CTL_t14   tRNA-Ile FALSE 0.068 38.000 0.000 NA   NA
 3794347 3794348 CTL_t14 CTL_t02 tRNA-Ile tRNA-Ala FALSE 0.279 6.000 0.000 NA   NA
 3794348 3794349 CTL_t02 CTL0433 tRNA-Ala   FALSE 0.012 119.000 0.000 NA   NA
 3794350 3794351 CTL0434 CTL0435 kdsB pyrG TRUE 0.879 -24.000 0.018 1.000 N NA
 3794351 3794352 CTL0435 CTL0436 pyrG   TRUE 0.865 -13.000 0.006 1.000 N NA
 3794352 3794353 CTL0436 CTL0437   zwf FALSE 0.262 117.000 0.004 1.000 N NA
 3794353 3794354 CTL0437 CTL0438 zwf devB TRUE 0.965 25.000 0.021 1.000 Y NA
 3794355 3794356 CTL0439 CTL0440 dnaX tdk TRUE 0.955 14.000 0.254 1.000 N NA
 3794356 3794357 CTL0440 CTL0441 tdk gyrA TRUE 0.938 2.000 0.007 1.000 N NA
 3794357 3794358 CTL0441 CTL0442 gyrA gyrB2 TRUE 0.993 15.000 0.306 0.005 Y NA
 3794358 3794359 CTL0442 CTL0443 gyrB2   TRUE 0.903 3.000 0.028 NA   NA
 3794359 3794360 CTL0443 CTL0444     FALSE 0.108 147.000 0.006 NA   NA
 3794360 3794361 CTL0444 CTL0445   tgt FALSE 0.014 104.000 0.000 NA   NA
 3794361 3794362 CTL0445 CTL0446 tgt mgtE FALSE 0.232 127.000 0.003 1.000 N NA
 3794362 3794363 CTL0446 CTL0447 mgtE   FALSE 0.011 440.000 0.000 NA   NA
 3794364 3794365 CTL0448 CTL0449   gcp FALSE 0.133 76.000 0.002 NA   NA
 3794365 3794366 CTL0449 CTL0450 gcp oppA3 TRUE 0.790 -36.000 0.006 1.000 N NA
 3794366 3794367 CTL0450 CTL0451 oppA3 oppB TRUE 0.788 159.000 0.091 0.022 Y NA
 3794367 3794368 CTL0451 CTL0452 oppB oppC TRUE 0.976 32.000 0.273 0.022 Y NA
 3794368 3794369 CTL0452 CTL0453 oppC oppD TRUE 0.979 -7.000 0.044 1.000 Y NA
 3794369 3794370 CTL0453 CTL0454 oppD oppF TRUE 0.991 15.000 0.044 0.005 Y NA
 3794370 3794371 CTL0454 CTL0455 oppF   FALSE 0.010 312.000 0.000 NA   NA
 3794371 3794372 CTL0455 CTL0456     TRUE 0.764 30.000 0.217 NA   NA
 3794372 3794373 CTL0456 CTL0457   pfkA TRUE 0.929 20.000 0.088 1.000 N NA
 3794373 3794374 CTL0457 CTL0458 pfkA   TRUE 0.935 9.000 0.088 1.000   NA
 3794374 3794375 CTL0458 CTL0459   pfkA_2 TRUE 0.907 -18.000 0.857 1.000   NA
 3794376 3794377 CTL_t22 CTL_t23 tRNA-Met tRNA-Met FALSE 0.174 19.000 0.000 NA   NA
 3794377 3794378 CTL_t23 CTL0460 tRNA-Met gseA FALSE 0.112 27.000 0.000 NA   NA
 3794378 3794379 CTL0460 CTL0461 gseA leuS TRUE 0.910 -3.000 0.006 1.000 N NA
 3794381 3794382 CTL0463 CTL0464     TRUE 0.791 20.000 0.012 NA   NA
 3794382 3794383 CTL0464 CTL0465   rpiA TRUE 0.779 -10.000 0.011 NA   NA
 3794383 3794384 CTL0465 CTL0466 rpiA   FALSE 0.109 95.000 0.003 NA   NA
 3794385 3794386 CTL0467 CTL0468 dhnA xasA TRUE 0.968 14.000 1.000 1.000 N NA
 3794386 3794387 CTL0468 CTL0469 xasA   TRUE 0.489 94.000 0.250 NA N NA
 3794387 3794388 CTL0469 CTL0470   surE FALSE 0.177 131.000 0.015 NA   NA
 3794388 3794389 CTL0470 CTL0471 surE ubiA FALSE 0.182 112.000 0.006 1.000   NA
 3794389 3794390 CTL0471 CTL0472 ubiA   TRUE 0.983 -3.000 0.029 1.000 Y NA
 3794391 3794392 CTL0473 CTL_t07   tRNA-Asp FALSE 0.136 24.000 0.000 NA   NA
 3794392 3794393 CTL_t07 CTL_t37 tRNA-Asp tRNA-Val FALSE 0.266 8.000 0.000 NA   NA
 3794393 3794394 CTL_t37 CTL0474 tRNA-Val   FALSE 0.012 113.000 0.000 NA   NA
 3794394 3794395 CTL0474 CTL0475     FALSE 0.112 27.000 0.000 NA   NA
 3794395 3794396 CTL0475 CTL0476     FALSE 0.010 142.000 0.000 NA   NA
 3794396 3794397 CTL0476 CTL0477     FALSE 0.011 392.000 0.000 NA   NA
 3794397 3794398 CTL0477 CTL0477A     FALSE 0.013 108.000 0.000 NA   NA
 3794398 3794399 CTL0477A CTL0478     FALSE 0.016 99.000 0.000 NA   NA
 3794399 3794400 CTL0478 CTL0479     FALSE 0.348 129.000 1.000 NA   NA
 3794400 3794401 CTL0479 CTL0480     FALSE 0.010 281.000 0.000 NA   NA
 3794401 3794402 CTL0480 CTL0481     FALSE 0.325 150.000 1.000 NA   NA
 3794403 3794404 CTL0482 CTL0483     FALSE 0.300 184.000 0.273 1.000   NA
 3794404 3794405 CTL0483 CTL0484   incB FALSE 0.317 105.000 0.273 NA   NA
 3794405 3794406 CTL0484 CTL0485 incB incC TRUE 0.547 77.000 1.000 NA   NA
 3794406 3794407 CTL0485 CTL0486 incC   TRUE 0.625 58.000 0.667 NA   NA
 3794407 3794408 CTL0486 CTL0487     TRUE 0.767 29.000 0.182 NA   NA
 3794409 3794410 CTL0488 CTL0489 acpP fabG TRUE 0.747 369.000 0.007 0.012 Y NA
 3794410 3794411 CTL0489 CTL0490 fabG fabD TRUE 0.991 -3.000 0.019 0.012 Y NA
 3794411 3794412 CTL0490 CTL0491 fabD fabH TRUE 0.986 17.000 0.009 0.012 Y NA
 3794413 3794414 CTL0492 CTL0493 recR   FALSE 0.238 374.000 0.003 1.000 N NA
 3794414 3794415 CTL0493 CTL0494   ompH TRUE 0.865 67.000 0.175 1.000 Y NA
 3794415 3794416 CTL0494 CTL0495 ompH lpxD TRUE 0.954 28.000 0.018 1.000 Y NA
 3794418 3794419 CTL0497 CTL0498 pdhA pdhB TRUE 0.993 -7.000 0.456 0.002 Y NA
 3794419 3794420 CTL0498 CTL0499 pdhB pdhC TRUE 0.989 5.000 0.254 1.000 Y NA
 3794423 3794424 CTL0501 CTL0503 dnaA oxaA TRUE 0.692 77.000 0.714 1.000 N NA
 3794424 3794425 CTL0503 CTL0504 oxaA lgt FALSE 0.278 310.000 0.006 1.000 N NA
 3794426 3794427 CTL0505 CTL0506     TRUE 0.939 4.000 0.500 NA   NA
 3794429 3794430 CTL0508 CTL0509     TRUE 0.885 -10.000 0.545 NA   NA
 3794431 3794432 CTL0510 CTL0511     TRUE 0.960 6.000 0.041 1.000 N NA
 3794433 3794434 CTL0512 CTL0513   dnaQ TRUE 0.903 9.000 0.050 NA   NA
 3794434 3794435 CTL0513 CTL0514 dnaQ   TRUE 0.882 -3.000 0.031 NA   NA
 3794435 3794436 CTL0514 CTL0515     TRUE 0.837 -7.000 0.019 NA   NA
 3794437 3794438 CTL0516 CTL0517   accA TRUE 0.845 -34.000 0.010 1.000 N NA
 3794438 3794439 CTL0517 CTL0518 accA   FALSE 0.142 133.000 0.008 NA   NA
 3794439 3794440 CTL0518 CTL0519   ihfA FALSE 0.263 118.000 0.182 NA   NA
 3794440 3794441 CTL0519 CTL0520 ihfA amiA FALSE 0.139 220.000 0.000 1.000 N NA
 3794441 3794442 CTL0520 CTL0521 amiA murE TRUE 0.941 -85.000 0.014 1.000 Y NA
 3794442 3794443 CTL0521 CTL0522 murE pbp TRUE 0.663 323.000 0.022 1.000 Y NA
 3794443 3794444 CTL0522 CTL0523 pbp   TRUE 0.839 -13.000 0.135 NA   NA
 3794444 3794445 CTL0523 CTL0524   mraW TRUE 0.834 0.000 0.007 NA   NA
 3794446 3794447 CTL0525 CTL0526     TRUE 0.925 7.000 0.286 NA   NA
 3794447 3794448 CTL0526 CTL0527   dnaA2 FALSE 0.056 242.000 0.000 1.000   NA
 3794448 3794449 CTL0527 CTL0528 dnaA2   TRUE 0.538 52.000 0.006 NA N NA
 3794451 3794452 CTL0530 CTL0531 nqrB nqrC TRUE 0.995 4.000 0.093 0.002 Y NA
 3794452 3794453 CTL0531 CTL0532 nqrC nqrD TRUE 0.987 -10.000 0.034 0.007 Y NA
 3794453 3794454 CTL0532 CTL0533 nqrD nqrE TRUE 0.994 6.000 0.034 0.007 Y NA
 3794455 3794456 CTL0534 CTL0535 gcsH   TRUE 0.927 20.000 0.857 1.000   NA
 3794456 3794457 CTL0535 CTL0536     FALSE 0.249 195.000 0.032 1.000   NA
 3794457 3794458 CTL0536 CTL0537   lplA TRUE 0.979 6.000 0.032 0.021 N NA
 3794462 3794463 CTL0541 CTL0542     TRUE 0.557 58.000 0.231 NA   NA
 3794463 3794464 CTL0542 CTL0543   ptsN_2 TRUE 0.995 3.000 0.231 0.002 Y NA
 3794464 3794465 CTL0543 CTL0544 ptsN_2 dut TRUE 0.945 2.000 0.008 1.000 N NA
 3794465 3794466 CTL0544 CTL0545 dut accD TRUE 0.778 37.000 0.008 1.000 N NA
 3794466 3794467 CTL0545 CTL0546 accD sodM TRUE 0.538 71.000 0.009 1.000 N NA
 3794467 3794468 CTL0546 CTL0547 sodM mrsA FALSE 0.404 132.000 0.067 1.000 N NA
 3794468 3794469 CTL0547 CTL0548 mrsA   FALSE 0.178 152.000 0.022 NA   NA
 3794470 3794471 CTL0549 CTL0550 rnc radA TRUE 0.869 -16.000 0.007 1.000 N NA
 3794471 3794472 CTL0550 CTL0551 radA hemC TRUE 0.702 44.000 0.007 1.000 N NA
 3794472 3794473 CTL0551 CTL0552 hemC   FALSE 0.011 394.000 0.000 NA   NA
 3794474 3794475 CTL0553 CTL0554 pknD valS TRUE 0.907 15.000 0.006 1.000 N NA
 3794475 3794476 CTL0554 CTL0555 valS   FALSE 0.112 127.000 0.006 NA   NA
 3794476 3794477 CTL0555 CTL0556   atpK TRUE 0.694 -79.000 0.030 NA   NA
 3794477 3794478 CTL0556 CTL0557 atpK atpI TRUE 0.847 62.000 0.848 0.002   NA
 3794478 3794479 CTL0557 CTL0558 atpI atpD TRUE 0.994 6.000 0.270 0.010 Y NA
 3794479 3794480 CTL0558 CTL0559 atpD atpB TRUE 0.991 -15.000 0.903 0.010 Y NA
 3794480 3794481 CTL0559 CTL0560 atpB atpA TRUE 0.996 3.000 0.806 0.010 Y NA
 3794481 3794482 CTL0560 CTL0561 atpA   TRUE 0.913 -6.000 0.633 NA   NA
 3794482 3794483 CTL0561 CTL0562   atpE FALSE 0.280 167.000 0.667 NA   NA
 3794485 3794486 CTL0564 CTL0565   tal TRUE 0.760 45.000 0.667 1.000   NA
 3794486 3794487 CTL0565 CTL0566 tal rpoC FALSE 0.305 112.000 0.006 1.000 N NA
 3794487 3794488 CTL0566 CTL0567 rpoC rpoB TRUE 0.990 25.000 0.851 0.002 Y NA
 3794488 3794489 CTL0567 CTL0568 rpoB rplL FALSE 0.440 361.000 0.223 1.000 N NA
 3794489 3794490 CTL0568 CTL0569 rplL rplJ TRUE 0.981 32.000 0.884 0.050 Y NA
 3794490 3794491 CTL0569 CTL0570 rplJ rplA TRUE 0.985 22.000 0.302 0.066 Y NA
 3794491 3794492 CTL0570 CTL0571 rplA rplK TRUE 0.988 23.000 0.838 0.066 Y NA
 3794492 3794493 CTL0571 CTL0572 rplK nusG TRUE 0.564 106.000 0.681 1.000 N NA
 3794493 3794494 CTL0572 CTL0573 nusG secE TRUE 0.976 4.000 0.843 1.000 N NA
 3794494 3794495 CTL0573 CTL_t34 secE tRNA-Trp FALSE 0.095 30.000 0.000 NA   NA
 3794495 3794496 CTL_t34 CTL0574 tRNA-Trp tufA FALSE 0.062 41.000 0.000 NA   NA
 3794496 3794497 CTL0574 CTL_t33 tufA tRNA-Thr FALSE 0.050 46.000 0.000 NA   NA
 3794497 3794498 CTL_t33 CTL0575 tRNA-Thr infA2 FALSE 0.010 231.000 0.000 NA   NA
 3794499 3794500 CTL0576 CTL0577     TRUE 0.893 -3.000 0.054 NA   NA
 3794501 3794502 CTL0578 CTL0580     FALSE 0.009 190.000 0.000 NA   NA
 3794505 3794506 CTL0582 CTL0583 tpiS xseA TRUE 0.921 14.000 0.007 1.000 N NA
 3794506 3794507 CTL0583 CTL0583A xseA xseB TRUE 0.954 -16.000 0.412 0.002   NA
 3794507 3794508 CTL0583A CTL0584 xseB   TRUE 0.835 7.000 0.007 NA   NA
 3794508 3794509 CTL0584 CTL0585   dxs TRUE 0.852 -3.000 0.011 NA   NA
 3794509 3794510 CTL0585 CTL0586 dxs pykF FALSE 0.324 97.000 0.004 1.000 N NA
 3794510 3794511 CTL0586 CTL0587 pykF uvrA TRUE 0.815 23.000 0.002 1.000 N NA
 3794511 3794512 CTL0587 CTL0588 uvrA dnaX FALSE 0.426 218.000 0.000 1.000 Y NA
 3794512 3794513 CTL0588 CTL0589 dnaX   TRUE 0.896 -7.000 0.411 NA   NA
 3794514 3794515 CTL0590 CTL0591 ptsI ptsH TRUE 0.993 0.000 0.026 0.005 Y NA
 3794515 3794516 CTL0591 CTL0592 ptsH   FALSE 0.164 138.000 0.013 NA   NA
 3794516 3794517 CTL0592 CTL0592A     FALSE 0.040 57.000 0.000 NA   NA
 3794519 3794520 CTL0594 CTL0595   dnaJ TRUE 0.873 35.000 0.333 1.000 N NA
 3794520 3794521 CTL0595 CTL0596 dnaJ rpsU TRUE 0.848 29.000 0.412 1.000   NA
 3794521 3794522 CTL0596 CTL0597 rpsU   FALSE 0.155 198.000 0.006 1.000   NA
 3794523 3794524 CTL0598 CTL0599 lon   FALSE 0.223 102.000 0.012 NA   NA
 3794524 3794525 CTL0599 CTL0600     FALSE 0.011 343.000 0.000 NA   NA
 3794525 3794526 CTL0600 CTL0601   xerC FALSE 0.334 62.000 0.004 1.000   NA
 3794526 3794527 CTL0601 CTL0602 xerC   TRUE 0.545 54.000 0.010 1.000   NA
 3794527 3794528 CTL0602 CTL0603     TRUE 0.640 36.000 0.017 NA   NA
 3794528 3794529 CTL0603 CTL0604     TRUE 0.854 -18.000 0.017 NA N NA
 3794529 3794530 CTL0604 CTL0605     TRUE 0.934 7.000 0.500 NA   NA
 3794531 3794532 CTL0606 CTL0607 secG def FALSE 0.202 156.000 0.002 1.000 N NA
 3794532 3794533 CTL0607 CTL0608 def ksgA TRUE 0.441 275.000 0.000 1.000 Y NA
 3794533 3794534 CTL0608 CTL0609 ksgA   TRUE 0.797 16.000 0.005 1.000   NA
 3794534 3794535 CTL0609 CTL0610     FALSE 0.375 305.000 0.667 1.000   NA
 3794536 3794537 CTL_t28 CTL0611A tRNA-Ser   FALSE 0.009 156.000 0.000 NA   NA
 3794537 3794538 CTL0611A CTL0612     FALSE 0.120 26.000 0.000 NA   NA
 3794539 3794540 CTL0613 CTL0614     FALSE 0.010 252.000 0.000 NA   NA
 3794540 3794541 CTL0614 CTL0615   dapA FALSE 0.159 162.000 0.014 NA   NA
 3794541 3794542 CTL0615 CTL0616 dapA lysC TRUE 0.984 10.000 0.021 1.000 Y NA
 3794542 3794543 CTL0616 CTL0617 lysC asd TRUE 0.978 -7.000 0.022 1.000 Y NA
 3794543 3794544 CTL0617 CTL0618 asd dapB TRUE 0.986 10.000 0.005 0.059 Y NA
 3794544 3794545 CTL0618 CTL0619 dapB   FALSE 0.009 177.000 0.000 NA   NA
 3794546 3794547 CTL0620 CTL0621 aroA aroL TRUE 0.927 -58.000 0.006 1.000 Y NA
 3794547 3794548 CTL0621 CTL0622 aroL aroC TRUE 0.966 -7.000 0.006 1.000 Y NA
 3794548 3794549 CTL0622 CTL0623 aroC aroB TRUE 0.993 -3.000 0.110 0.005 Y NA
 3794549 3794550 CTL0623 CTL0624 aroB aroE TRUE 0.978 -19.000 0.007 0.005 Y NA
 3794550 3794551 CTL0624 CTL0625 aroE   TRUE 0.662 42.000 0.214 NA   NA
 3794551 3794552 CTL0625 CTL0626     FALSE 0.246 141.000 0.300 NA   NA
 3794552 3794553 CTL0626 CTL0627     FALSE 0.026 69.000 0.000 NA   NA
 3794553 3794554 CTL0627 CTL0628     FALSE 0.200 16.000 0.000 NA   NA
 3794554 3794555 CTL0628 CTL0629     TRUE 0.603 172.000 0.011 1.000 Y NA
 3794556 3794557 CTL0630 CTL0631 mdhC ltuA FALSE 0.134 190.000 0.009 NA   NA
 3794557 3794558 CTL0631 CTL0633 ltuA pgi FALSE 0.264 115.000 0.133 NA   NA
 3794558 3794559 CTL0633 CTL0634 pgi   FALSE 0.141 113.000 0.002 1.000   NA
 3794559 3794560 CTL0634 CTL0635   phnP TRUE 0.880 13.000 0.008 1.000   NA
 3794560 3794561 CTL0635 CTL0636 phnP artJ TRUE 0.638 29.000 0.005 1.000   NA
 3794561 3794562 CTL0636 CTL0637 artJ aroG TRUE 0.859 69.000 0.200 1.000 Y NA
 3794562 3794563 CTL0637 CTL0638 aroG   FALSE 0.010 137.000 0.000 NA   NA
 3794565 3794566 CTL0640 CTL0641     TRUE 0.621 15.000 0.000 1.000   NA
 3794566 3794567 CTL0641 CTL0642     TRUE 0.852 -3.000 0.011 NA   NA
 3794570 3794571 CTL0645 CTL0646   dapL FALSE 0.203 108.000 0.012 NA   NA
 3794571 3794572 CTL0646 CTL0647 dapL   TRUE 0.901 8.000 0.037 NA   NA
 3794574 3794575 CTL0649 CTL0650 proS   TRUE 0.527 69.000 0.007 1.000 N NA
 3794575 3794576 CTL0650 CTL0651   grpE TRUE 0.959 -3.000 0.286 1.000 N NA
 3794576 3794577 CTL0651 CTL0652 grpE dnaK TRUE 0.984 26.000 0.224 0.013 Y NA
 3794577 3794578 CTL0652 CTL0654 dnaK vacB FALSE 0.225 293.000 0.003 1.000 N NA
 3794578 3794579 CTL0654 CTL0655 vacB   FALSE 0.010 256.000 0.000 NA   NA
 3794580 3794581 CTL0656 CTL0657   sucB TRUE 0.907 32.000 0.857 1.000 N NA
 3794581 3794582 CTL0657 CTL0658 sucB gltT TRUE 0.738 246.000 0.714 1.000 Y NA
 3794582 3794583 CTL0658 CTL0659 gltT   TRUE 0.940 -3.000 0.013 1.000 N NA
 3794583 3794584 CTL0659 CTL0660     FALSE 0.228 166.000 0.006 1.000 N NA
 3794584 3794585 CTL0660 CTL0661     TRUE 0.850 -12.000 0.213 NA   NA
 3794585 3794586 CTL0661 CTL0662   ribC TRUE 0.793 -3.000 0.006 NA   NA
 3794587 3794588 CTL0663 CTL0664   dksA TRUE 0.903 14.000 0.009 NA N NA
 3794588 3794589 CTL0664 CTL0665 dksA lspA TRUE 0.959 6.000 0.038 1.000 N NA
 3794589 3794590 CTL0665 CTL0666 lspA   TRUE 0.635 102.000 0.038 0.053 N NA
 3794590 3794591 CTL0666 CTL0667   pcnB FALSE 0.139 216.000 0.000 1.000 N NA
 3794591 3794592 CTL0667 CTL0668 pcnB lpxB TRUE 0.637 61.000 0.010 1.000 N NA
 3794592 3794593 CTL0668 CTL0669 lpxB pmpA FALSE 0.077 107.000 0.000 1.000   NA
 3794593 3794594 CTL0669 CTL0670 pmpA pmpB FALSE 0.209 139.000 0.000 0.014   NA
 3794594 3794595 CTL0670 CTL0671 pmpB pmpC TRUE 0.567 175.000 1.000 0.014   NA
 3794597 3794598 CTL0672 CTL0673     TRUE 0.988 -3.000 0.509 1.000 Y NA
 3794598 3794599 CTL0673 CTL0674     TRUE 0.983 -9.000 0.616 1.000 Y NA
 3794600 3794601 CTL0675 CTL0676   rpmA TRUE 0.480 90.000 0.335 1.000   NA
 3794601 3794602 CTL0676 CTL0677 rpmA rplU TRUE 0.980 31.000 0.667 0.048 Y NA
 3794602 3794603 CTL0677 CTL_t24 rplU tRNA-Phe FALSE 0.010 317.000 0.000 NA   NA
 3794604 3794605 CTL0678 CTL0679     FALSE 0.175 185.000 0.024 NA   NA
 3794605 3794606 CTL0679 CTL0680     TRUE 0.907 17.000 0.667 NA   NA
 3794606 3794607 CTL0680 CTL0681     TRUE 0.768 13.000 0.006 NA   NA
 3794607 3794608 CTL0681 CTL0682     FALSE 0.242 133.000 0.222 NA   NA
 3794608 3794609 CTL0682 CTL0683   rsbV FALSE 0.079 189.000 0.006 NA   NA
 3794609 3794610 CTL0683 CTL0684 rsbV   FALSE 0.235 178.000 0.286 NA   NA
 3794610 3794611 CTL0684 CTL0685     FALSE 0.145 197.000 0.011 NA   NA
 3794611 3794612 CTL0685 CTL0686     TRUE 0.798 -27.000 0.205 NA   NA
 3794612 3794613 CTL0686 CTL0687   ubiE TRUE 0.605 -64.000 0.008 NA   NA
 3794614 3794615 CTL0688 CTL0689   dapF FALSE 0.358 61.000 0.008 NA   NA
 3794615 3794616 CTL0689 CTL0690 dapF clpP TRUE 0.793 -31.000 0.006 1.000 N NA
 3794616 3794617 CTL0690 CTL0691 clpP glyA TRUE 0.953 12.000 0.051 1.000 N NA
 3794618 3794619 CTL0692 CTL0693   ispF FALSE 0.298 103.000 0.003 1.000 N NA
 3794620 3794621 CTL0694 CTL0695   rpsJ TRUE 0.885 17.000 0.006 1.000 N NA
 3794621 3794622 CTL0695 CTL0696 rpsJ fusA TRUE 0.980 8.000 0.007 1.000 Y NA
 3794622 3794623 CTL0696 CTL0697 fusA rpsG TRUE 0.905 42.000 0.008 1.000 Y NA
 3794623 3794624 CTL0697 CTL0698 rpsG rpsL TRUE 0.951 50.000 0.029 0.009 Y NA
 3794625 3794626 CTL0699 CTL0700   tsp FALSE 0.243 158.000 0.025 1.000   NA
 3794627 3794628 CTL0701 CTL0702 crpA omcB FALSE 0.286 178.000 0.200 1.000   NA
 3794628 3794629 CTL0702 CTL0703 omcB omcA TRUE 0.576 147.000 0.600 0.002   NA
 3794631 3794632 CTL0705 CTL0706 gltX euo FALSE 0.058 271.000 0.000 1.000   NA
 3794632 3794633 CTL0706 CTL0707 euo recJ FALSE 0.064 404.000 0.000 1.000   NA
 3794633 3794634 CTL0707 CTL0708a recJ secF FALSE 0.215 118.000 0.007 1.000   NA
 3794634 10750537 CTL0708a CTL0708 secF   FALSE 0.090 -68.000 0.000 NA   NA
 10750537 3794635 CTL0708 CTL0709     FALSE 0.011 420.000 0.000 NA   NA
 3794636 3794637 CTL0710 CTL0711 uppS cdsA TRUE 0.990 6.000 0.400 1.000 Y NA
 3794637 3794638 CTL0711 CTL0712 cdsA cmk TRUE 0.932 -3.000 0.008 1.000 N NA
 3794638 3794639 CTL0712 CTL0713 cmk plsC TRUE 0.932 -3.000 0.008 1.000 N NA
 3794639 3794640 CTL0713 CTL0714 plsC argS TRUE 0.900 15.000 0.006 1.000 N NA
 3794643 3794644 CTL0717 CTL0718     FALSE 0.057 183.000 0.002 NA   NA
 3794644 3794645 CTL0718 CTL0719   prfB TRUE 0.976 -3.000 0.006 1.000 Y NA
 3794646 3794647 CTL0720 CTL0721     TRUE 0.656 58.000 0.316 1.000   NA
 3794647 3794648 CTL0721 CTL0722   ispD TRUE 0.842 -10.000 0.010 1.000   NA
 3794648 3794649 CTL0722 CTL0723 ispD truA TRUE 0.934 9.000 0.007 1.000 N NA
 3794651 3794652 CTL0725 CTL_t16   tRNA-Leu FALSE 0.010 130.000 0.000 NA   NA
 3794652 3794653 CTL_t16 CTL0726 tRNA-Leu   FALSE 0.021 82.000 0.000 NA   NA
 3794653 3794654 CTL0726 CTL0727   atoS TRUE 0.789 -22.000 0.057 NA   NA
 3794654 3794655 CTL0727 CTL0728 atoS atoC TRUE 0.953 43.000 0.019 0.019 Y NA
 3794655 3794656 CTL0728 CTL_t04 atoC tRNA-Arg FALSE 0.028 67.000 0.000 NA   NA
 3794656 3794657 CTL_t04 CTL0729 tRNA-Arg   FALSE 0.019 87.000 0.000 NA   NA
 3794657 3794658 CTL0729 CTL0730   recO TRUE 0.611 -30.000 0.007 NA   NA
 3794659 3794660 CTL0731 CTL_t18   tRNA-Leu FALSE 0.010 131.000 0.000 NA   NA
 3794661 3794662 CTL0733 CTL0734     TRUE 0.845 6.000 0.007 NA   NA
 3794664 3794665 CTL0736 CTL0737 pheT   TRUE 0.785 -3.000 0.006 NA   NA
 3794665 3794666 CTL0737 CTL0738     TRUE 0.843 19.000 0.038 NA   NA
 3794667 3794668 CTL0739 CTL0740 oppC2 oppB2 TRUE 0.994 2.000 0.400 0.019 Y NA
 3794668 3794669 CTL0740 CTL0741 oppB2 oppA4 TRUE 0.961 45.000 0.318 0.019 Y NA
 3794669 3794670 CTL0741 CTL0742 oppA4   FALSE 0.164 606.000 0.000 1.000 N NA
 3794670 3794671 CTL0742 CTL0743     FALSE 0.287 162.000 0.714 NA   NA
 3794673 3794674 CTL0745 CTL0746   hemZ FALSE 0.055 157.000 0.000 1.000   NA
 3794674 3794675 CTL0746 CTL0747 hemZ fliY TRUE 0.896 22.000 0.011 1.000 N NA
 3794675 3794676 CTL0747 CTL0748 fliY   TRUE 0.617 46.000 0.005 1.000 N NA
 3794676 3794677 CTL0748 CTL0749     TRUE 0.880 -3.000 0.008 1.000   NA
 3794677 3794678 CTL0749 CTL0750   glgC FALSE 0.434 89.000 0.070 1.000   NA
 3794680 3794681 CTL0752 CTL0753 rho   TRUE 0.940 -3.000 0.013 1.000 N NA
 3794681 3794682 CTL0753 CTL0754   polA TRUE 0.944 -6.000 0.068 1.000 N NA
 3794682 3794683 CTL0754 CTL0755 polA sohB TRUE 0.888 17.000 0.006 1.000 N NA
 3794683 3794684 CTL0755 CTL0756 sohB   FALSE 0.322 140.000 0.011 1.000 N NA
 3794684 3794685 CTL0756 CTL0757   pgsA FALSE 0.277 212.000 0.000 0.051 N NA
 3794685 3794686 CTL0757 CTL_t30 pgsA tRNA-Ser FALSE 0.009 182.000 0.000 NA   NA
 3794686 3794687 CTL_t30 CTL0758 tRNA-Ser   FALSE 0.011 126.000 0.000 NA   NA
 3794688 3794689 CTL0759 CTL0760 dnaB gidA FALSE 0.150 295.000 0.000 1.000 N NA
 3794689 3794690 CTL0760 CTL0761 gidA lplA TRUE 0.892 -10.000 0.008 1.000 N NA
 3794691 3794692 CTL0762 CTL0763 ndk ruvA FALSE 0.245 160.000 0.006 1.000 N NA
 3794692 3794693 CTL0763 CTL0764 ruvA ruvC TRUE 0.990 20.000 0.451 0.011 Y NA
 3794693 3794694 CTL0764 CTL0765 ruvC   FALSE 0.129 108.000 0.006 NA   NA
 3794694 3794695 CTL0765 CTL_t19   tRNA-Leu FALSE 0.009 190.000 0.000 NA   NA
 3794695 3794696 CTL_t19 CTL0766 tRNA-Leu   FALSE 0.011 120.000 0.000 NA   NA
 3794696 3794697 CTL0766 CTL0767   gapA TRUE 0.905 11.000 0.128 NA   NA
 3794697 3794698 CTL0767 CTL0768 gapA rplQ TRUE 0.653 44.000 0.006 1.000 N NA
 3794698 3794699 CTL0768 CTL0769 rplQ rpoA TRUE 0.973 9.000 0.873 1.000 N NA
 3794699 3794700 CTL0769 CTL0770 rpoA rpsK TRUE 0.935 21.000 0.308 1.000 N NA
 3794700 3794701 CTL0770 CTL0771 rpsK rpsM TRUE 0.989 22.000 0.810 0.046 Y NA
 3794701 3794702 CTL0771 CTL0772 rpsM secY TRUE 0.680 56.000 0.011 1.000 N NA
 3794702 3794703 CTL0772 CTL0773 secY rplO TRUE 0.940 23.000 0.730 1.000 N NA
 3794703 3794704 CTL0773 CTL0774 rplO rpsE TRUE 0.988 -7.000 0.148 0.061 Y NA
 3794704 3794705 CTL0774 CTL0775 rpsE rplR TRUE 0.992 15.000 0.814 0.061 Y NA
 3794705 3794706 CTL0775 CTL0776 rplR rplF TRUE 0.989 22.000 0.815 0.046 Y NA
 3794706 3794707 CTL0776 CTL0777 rplF rpsH TRUE 0.984 28.000 0.808 0.046 Y NA
 3794707 3794708 CTL0777 CTL0778 rpsH rplE TRUE 0.988 18.000 0.059 0.046 Y NA
 3794708 3794709 CTL0778 CTL0779 rplE rplX TRUE 0.995 2.000 0.758 0.046 Y NA
 3794709 3794710 CTL0779 CTL0780 rplX rplN TRUE 0.993 13.000 0.810 0.061 Y NA
 3794710 3794711 CTL0780 CTL0781 rplN rpsQ TRUE 0.991 17.000 0.791 0.061 Y NA
 3794711 3794712 CTL0781 CTL0782 rpsQ rpmC TRUE 0.966 -7.000 0.828 0.046   NA
 3794712 3794713 CTL0782 CTL0783 rpmC rplP TRUE 0.979 2.000 0.802 0.046   NA
 3794713 3794714 CTL0783 CTL0784 rplP rpsC TRUE 0.978 33.000 0.828 0.061 Y NA
 3794714 3794715 CTL0784 CTL0785 rpsC rplV TRUE 0.994 10.000 0.719 0.061 Y NA
 3794715 3794716 CTL0785 CTL0786 rplV rpsS TRUE 0.990 19.000 0.769 0.061 Y NA
 3794716 3794717 CTL0786 CTL0787 rpsS rplB TRUE 0.995 6.000 0.820 0.061 Y NA
 3794717 3794718 CTL0787 CTL0788 rplB rplW TRUE 0.980 24.000 0.849 1.000 Y NA
 3794718 3794719 CTL0788 CTL0789 rplW rplD TRUE 0.977 16.000 0.013 1.000 Y NA
 3794719 3794720 CTL0789 CTL0790 rplD rplC TRUE 0.991 9.000 0.020 0.046 Y NA
 3794720 3794721 CTL0790 CTL0791 rplC   FALSE 0.011 435.000 0.000 NA   NA
 3794721 3794722 CTL0791 CTL0792   fmt FALSE 0.083 166.000 0.006 NA   NA
 3794722 3794723 CTL0792 CTL0793 fmt lpxA TRUE 0.884 -10.000 0.007 1.000 N NA
 3794723 3794724 CTL0793 CTL0794 lpxA fabZ TRUE 0.952 12.000 0.048 1.000 N NA
 3794724 3794725 CTL0794 CTL0795 fabZ lpxC TRUE 0.939 -3.000 0.012 1.000 N NA
 3794725 3794726 CTL0795 CTL0796 lpxC cutE TRUE 0.724 100.000 0.012 1.000 Y NA
 3794726 3794727 CTL0796 CTL0797 cutE   TRUE 0.611 64.000 0.072 NA N NA
 3794727 3794728 CTL0797 CTL0798   dnaQ2 FALSE 0.328 136.000 0.072 NA N NA
 3794728 3794729 CTL0798 CTL0799 dnaQ2   TRUE 0.842 4.000 0.007 NA   NA
 3794729 3794730 CTL0799 CTL0800     TRUE 0.713 -21.000 0.010 NA   NA
 3794731 3794732 CTL_t17 CTL0801 tRNA-Leu trxA FALSE 0.009 174.000 0.000 NA   NA
 3794733 3794734 CTL0802 CTL0803   mip TRUE 0.809 16.000 0.000 1.000 N NA
 3794734 3794735 CTL0803 CTL0804 mip aspS FALSE 0.245 138.000 0.006 1.000 N NA
 3794735 3794736 CTL0804 CTL0805 aspS hisS TRUE 0.976 -19.000 0.009 0.055 Y NA
 3794737 3794738 CTL0806 CTL0807 uhpC dnaE TRUE 0.918 14.000 0.007 1.000 N NA
 3794740 3794741 CTL0809 CTL0810     TRUE 0.867 25.000 0.750 NA   NA
 3794741 3794742 CTL0810 CTL0811   rsbW TRUE 0.896 -13.000 0.875 NA   NA
 3794744 3794745 CTL0813 CTL0814 dacC   FALSE 0.275 133.000 0.455 NA   NA
 3794745 3794746 CTL0814 CTL0815     TRUE 0.873 -3.000 0.020 NA   NA
 3794746 3794747 CTL0815 CTL0817   brnQ FALSE 0.227 150.000 0.008 NA N NA
 3794747 3794748 CTL0817 CTL0818 brnQ   TRUE 0.443 174.000 0.545 1.000 N NA
 3794748 3794749 CTL0818 CTL0819     FALSE 0.270 179.000 0.600 NA   NA
 3794749 3794750 CTL0819 CTL0820   lpdA FALSE 0.009 209.000 0.000 NA   NA
 3794750 3794751 CTL0820 CTL0821 lpdA lipA TRUE 0.934 -3.000 0.009 1.000 N NA
 3794751 3794752 CTL0821 CTL0822 lipA sctJ FALSE 0.298 104.000 0.004 1.000 N NA
 3794752 3794753 CTL0822 CTL0823 sctJ   TRUE 0.948 1.000 0.875 NA   NA
 3794753 3794754 CTL0823 CTL0824   sctL FALSE 0.284 276.000 0.556 NA   NA
 3794754 3794755 CTL0824 CTL0825 sctL sctR TRUE 0.988 13.000 0.700 1.000 Y NA
 3794755 3794756 CTL0825 CTL0826 sctR sctS TRUE 0.994 12.000 0.700 0.012 Y NA
 3794756 3794757 CTL0826 CTL0827 sctS sctT TRUE 0.991 7.000 0.875 1.000 Y NA
 3794758 3794759 CTL0828 CTL0829     TRUE 0.485 90.000 1.000 NA   NA
 3794759 3794760 CTL0829 CTL0830     TRUE 0.942 6.000 0.667 NA   NA
 3794760 3794761 CTL0830 CTL0831     TRUE 0.876 -15.000 0.667 NA   NA
 3794761 3794762 CTL0831 CTL0832   gspG TRUE 0.870 -16.000 0.667 NA   NA
 3794762 3794763 CTL0832 CTL0833 gspG gspF TRUE 0.838 62.000 0.030 NA Y NA
 3794763 3794764 CTL0833 CTL0834 gspF gspE TRUE 0.984 12.000 0.035 1.000 Y NA
 3794764 3794765 CTL0834 CTL0835 gspE gspD TRUE 0.976 -16.000 0.467 1.000 Y NA
 3794765 3794766 CTL0835 CTL0836 gspD   TRUE 0.933 1.000 0.467 NA   NA
 3794766 3794767 CTL0836 CTL0837   pepP FALSE 0.175 129.000 0.014 NA   NA
 3794767 3794768 CTL0837 CTL0838 pepP mutL TRUE 0.932 11.000 0.007 1.000 N NA
 3794769 3794770 CTL0839 CTL0840 scc2   TRUE 0.890 17.000 0.333 NA   NA
 3794770 3794771 CTL0840 CTL0841   copB TRUE 0.789 37.000 0.857 NA   NA
 3794771 3794772 CTL0841 CTL0842 copB copD TRUE 0.932 31.000 0.750 0.009   NA
 3794774 3794775 CTL0844 CTL0845 thrS minD FALSE 0.407 452.000 0.035 1.000 N NA
 3794775 3794776 CTL0845 CTL0846 minD gp6D TRUE 0.950 5.000 0.875 NA   NA
 3794776 3794777 CTL0846 CTL0847 gp6D   TRUE 0.836 -34.000 0.750 NA   NA
 3794777 3794778 CTL0847 CTL0848   trpS FALSE 0.191 179.000 0.039 NA   NA
 3794778 3794779 CTL0848 CTL0849 trpS uvrB TRUE 0.908 25.000 0.006 0.055 N NA
 3794779 3794780 CTL0849 CTL0850 uvrB eno FALSE 0.240 162.000 0.006 1.000 N NA
 3794780 3794781 CTL0850 CTL0851 eno rbsU FALSE 0.265 128.000 0.006 1.000 N NA
 3794781 3794782 CTL0851 CTL0852 rbsU   FALSE 0.404 125.000 0.750 1.000   NA
 3794783 3794784 CTL0853 CTL0854   sdhB FALSE 0.262 97.000 0.019 NA   NA
 3794784 3794785 CTL0854 CTL0855 sdhB sdhA TRUE 0.921 79.000 0.231 0.002 Y NA
 3794785 3794786 CTL0855 CTL0856 sdhA   FALSE 0.237 -3.000 0.000 NA   NA
 3794786 3794787 CTL0856 CTL0858     FALSE 0.010 147.000 0.000 NA   NA
 3794787 3794788 CTL0858 CTL0859   dsdD FALSE 0.379 85.000 0.008 NA N NA
 3794789 3794790 CTL0860 CTL0861 exbB   TRUE 0.993 -3.000 0.583 0.030 Y NA
 3794790 3794791 CTL0861 CTL0861A     TRUE 0.938 3.000 0.500 NA   NA
 3794791 3794792 CTL0861A CTL0862   tolB TRUE 0.941 0.000 0.750 NA   NA
 3794792 3794793 CTL0862 CTL0863 tolB pal TRUE 0.967 -3.000 0.750 1.000 N NA
 3794793 3794794 CTL0863 CTL0864 pal   TRUE 0.923 -10.000 0.750 1.000   NA
 3794794 3794795 CTL0864 CTL0865     TRUE 0.532 71.000 0.750 NA   NA
 3794796 3794797 CTL0866 CTL_t05 ahpC tRNA-Arg FALSE 0.128 25.000 0.000 NA   NA
 3794797 3794798 CTL_t05 CTL0867 tRNA-Arg groEL2 FALSE 0.013 111.000 0.000 NA   NA
 3794798 3794799 CTL0867 CTL0868 groEL2   FALSE 0.392 80.000 0.128 NA   NA
 3794801 3794802 CTL0870 CTL0871   ung TRUE 0.833 -15.000 0.140 NA   NA
 3794803 3794804 CTL0872 CTL0873 uvrD rpoN TRUE 0.955 4.000 0.015 1.000 N NA
 3794805 3794806 CTL0874 CTL0875     TRUE 0.893 -3.000 0.055 NA   NA
 3794806 3794807 CTL0875 CTL0876   folA TRUE 0.728 -28.000 0.017 NA   NA
 3794807 3794808 CTL0876 CTL0877 folA folP TRUE 0.982 -3.000 0.015 1.000 Y NA
 3794808 3794809 CTL0877 CTL0878 folP folX TRUE 0.984 -3.000 0.030 1.000 Y NA
 3794809 3794810 CTL0878 CTL0879 folX rpoD TRUE 0.925 19.000 0.030 1.000 N NA
 3794810 3794811 CTL0879 CTL0880 rpoD   TRUE 0.597 149.000 0.857 0.004   NA
 3794812 3794813 CTL0881 CTL0882 rpsT   FALSE 0.072 233.000 0.004 NA   NA
 3794816 3794817 CTL0885 CTL0886     FALSE 0.010 228.000 0.000 NA   NA
 3794817 3794818 CTL0886 CTL0887     FALSE 0.013 108.000 0.000 NA   NA
 3794818 3794819 CTL0887 CTL0888   mviN FALSE 0.131 244.000 0.008 NA   NA
 3794823 3794824 CTL0892 CTL0893 ispA glmU TRUE 0.626 56.000 0.054 1.000   NA
 3794824 3794825 CTL0893 CTL0894 glmU   TRUE 0.677 53.000 0.250 1.000   NA
 3794826 3794827 CTL0895 CTL_t25   tRNA-Pro FALSE 0.015 100.000 0.000 NA   NA