MicrobesOnline Operon Predictions for Treponema pallidum subsp. pallidum SS14

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 5651470 5651471 TPASS_0001 TPASS_0002 dnaA dnaN TRUE 0.944 243.000 0.328 1.000 Y NA
 5651471 5651472 TPASS_0002 TPASS_0003 dnaN recF TRUE 0.977 -133.000 0.318 1.000 Y NA
 5651472 5651473 TPASS_0003 TPASS_0004 recF   TRUE 0.980 -7.000 0.089 NA   NA
 5651473 5651474 TPASS_0004 TPASS_0005   gyrA FALSE 0.218 127.000 0.000 NA   NA
 5651474 5651475 TPASS_0005 TPASS_0006 gyrA   FALSE 0.205 182.000 0.000 NA   NA
 5651475 5651476 TPASS_0006 TPASS_0008     TRUE 0.655 24.000 0.000 NA   NA
 5651478 5651479 TPASS_0010 TPASS_0011   tprB FALSE 0.427 34.000 0.000 NA   NA
 5651479 5651480 TPASS_0011 TPASS_0012 tprB   TRUE 0.773 -6.000 0.000 NA   NA
 5651480 5651481 TPASS_0012 TPASS_0013     TRUE 0.838 -3.000 0.000 NA   NA
 5651481 5651482 TPASS_0013 TPASS_0014     FALSE 0.465 -43.000 0.000 NA   NA
 5651482 5651483 TPASS_0014 TPASS_0015   pheT FALSE 0.205 191.000 0.000 NA   NA
 5651483 5651484 TPASS_0015 TPASS_0016 pheT lon1 FALSE 0.183 -37.000 0.000 1.000 N NA
 5651484 5651485 TPASS_0016 TPASS_0017 lon1   FALSE 0.172 88.000 0.000 1.000   NA
 5651485 5651486 TPASS_0017 TPASS_0018     TRUE 0.468 67.000 0.000 0.051   NA
 5651486 5651487 TPASS_0018 TPASS_0019   greA FALSE 0.152 167.000 0.000 1.000   NA
 5651487 5651488 TPASS_0019 TPASS_0020 greA   TRUE 0.875 0.000 0.000 NA   NA
 5651489 5651490 TPASS_t0001 TPASS_t0002     FALSE 0.257 57.000 0.000 NA   NA
 5651490 5651491 TPASS_t0002 TPASS_t0003     FALSE 0.255 58.000 0.000 NA   NA
 5651491 5651492 TPASS_t0003 TPASS_t0004     FALSE 0.461 32.000 0.000 NA   NA
 5651492 5651493 TPASS_t0004 TPASS_t0005     FALSE 0.338 41.000 0.000 NA   NA
 5651494 5651495 TPASS_0021 TPASS_0022     FALSE 0.456 -45.000 0.000 NA   NA
 5651495 5651496 TPASS_0022 TPASS_0023     FALSE 0.245 61.000 0.000 NA   NA
 5651496 5651497 TPASS_0023 TPASS_0024     FALSE 0.149 180.000 0.000 1.000   NA
 5651498 5651499 TPASS_0025 TPASS_0026   fliG1 TRUE 0.896 29.000 0.020 1.000   NA
 5651500 5651501 TPASS_0027 TPASS_0028     TRUE 0.994 14.000 0.400 NA   NA
 5651501 5651502 TPASS_0028 TPASS_0029   murA FALSE 0.165 108.000 0.000 1.000   NA
 5651502 5651503 TPASS_0029 TPASS_0030 murA groEL FALSE 0.065 119.000 0.000 1.000 N NA
 5651503 5651504 TPASS_0030 TPASS_0031 groEL   FALSE 0.241 64.000 0.000 NA   NA
 5651505 5651506 TPASS_0032 TPASS_0033     TRUE 0.838 -3.000 0.000 NA   NA
 5651506 5651507 TPASS_0033 TPASS_0034     TRUE 0.761 101.000 0.028 NA   NA
 5651508 5651509 TPASS_0035 TPASS_0036     TRUE 0.997 0.000 0.231 1.000 Y NA
 5651510 5651511 TPASS_0037 TPASS_0038   pfoS/R FALSE 0.231 97.000 0.000 NA   NA
 5651512 5651513 TPASS_0039 TPASS_0040   mcp1 FALSE 0.199 678.000 0.000 NA   NA
 5651513 5651514 TPASS_0040 TPASS_0041 mcp1   TRUE 0.879 2.000 0.000 NA   NA
 5651514 5651515 TPASS_0041 TPASS_0042     TRUE 0.838 -3.000 0.000 NA   NA
 5651515 5651516 TPASS_0042 TPASS_0043     TRUE 0.619 -19.000 0.000 NA   NA
 5651516 5651517 TPASS_0043 TPASS_0044   gidA FALSE 0.352 40.000 0.000 NA   NA
 5651518 5651519 TPASS_0045 TPASS_0046     FALSE 0.200 362.000 0.000 NA   NA
 5651519 5651520 TPASS_0046 TPASS_0047     TRUE 0.965 18.000 0.018 NA   NA
 5651520 5651521 TPASS_0047 TPASS_0048     TRUE 0.991 6.000 0.076 NA   NA
 5651521 5651522 TPASS_0048 TPASS_0049     TRUE 0.986 22.000 0.417 1.000   NA
 5651522 5651523 TPASS_0049 TPASS_0050     FALSE 0.146 293.000 0.000 1.000   NA
 5651524 5651525 TPASS_0051 TPASS_0052 prfA hemK TRUE 0.974 -30.000 0.081 1.000 Y NA
 5651527 5651528 TPASS_0054 TPASS_0055     FALSE 0.059 207.000 0.000 1.000 N NA
 5651528 5651529 TPASS_0055 TPASS_0056   oadA TRUE 0.998 -3.000 0.081 0.004 Y NA
 5651529 5651530 TPASS_0056 TPASS_0057 oadA oadB TRUE 0.999 12.000 1.000 0.004 Y NA
 5651531 5651532 TPASS_0058 TPASS_0059 dnaB   TRUE 0.661 -16.000 0.000 NA   NA
 5651532 5651533 TPASS_0059 TPASS_0060   rplI TRUE 0.879 6.000 0.000 NA   NA
 5651533 5651534 TPASS_0060 TPASS_0061 rplI rpsR TRUE 0.978 106.000 0.499 0.055 Y NA
 5651534 5651535 TPASS_0061 TPASS_0062 rpsR ssb TRUE 0.585 117.000 0.019 1.000 N NA
 5651535 5651536 TPASS_0062 TPASS_0063 ssb rpsF TRUE 0.972 9.000 0.018 1.000 N NA
 5651537 5651538 TPASS_0064 TPASS_0065     FALSE 0.242 74.000 0.000 NA   NA
 5651538 5651539 TPASS_0065 TPASS_0066     TRUE 0.661 -16.000 0.000 NA   NA
 5651539 5651540 TPASS_0066 TPASS_0067     TRUE 0.871 -12.000 0.000 0.049   NA
 5651540 5651541 TPASS_0067 TPASS_0068     FALSE 0.149 181.000 0.000 1.000   NA
 5651542 5651543 TPASS_0069 TPASS_0070     TRUE 0.935 -150.000 0.200 NA   NA
 5651543 5651544 TPASS_0070 TPASS_0071   clpB FALSE 0.277 51.000 0.000 NA   NA
 5651547 5651548 TPASS_0074 TPASS_0075 y4oP y4oQ TRUE 0.979 119.000 0.350 0.028 Y NA
 5651548 5651549 TPASS_0075 TPASS_0076 y4oQ y4oR TRUE 0.988 40.000 0.318 0.028 Y NA
 5651549 5651550 TPASS_0076 TPASS_0077 y4oR cap TRUE 0.605 41.000 0.000 1.000 Y NA
 5651550 5651551 TPASS_0077 TPASS_0078 cap spsC TRUE 0.995 5.000 0.069 1.000 Y NA
 5651551 5651552 TPASS_0078 TPASS_0079 spsC   TRUE 0.868 -72.000 0.078 1.000 N NA
 5651552 5651553 TPASS_0079 TPASS_0080     TRUE 0.999 -3.000 0.263 0.017 Y NA
 5651553 5651554 TPASS_0080 TPASS_0081     TRUE 0.999 7.000 0.263 0.017 Y NA
 5651557 5651558 TPASS_0084 TPASS_0085   ptsN1 FALSE 0.224 114.000 0.000 NA   NA
 5651560 5651561 TPASS_0087 TPASS_0088     TRUE 0.956 -16.000 0.033 NA   NA
 5651561 5651562 TPASS_0088 TPASS_0089     TRUE 0.975 30.000 0.500 NA   NA
 5651562 5651563 TPASS_0089 TPASS_0090   murB TRUE 0.547 83.000 0.007 NA N NA
 5651564 5651565 TPASS_0091 TPASS_0092 cysS rpoE TRUE 0.502 71.000 0.008 1.000 N NA
 5651565 5651566 TPASS_0092 TPASS_0093 rpoE   TRUE 0.879 -16.000 0.000 NA Y NA
 5651566 5651567 TPASS_0093 TPASS_0094   pta FALSE 0.117 138.000 0.000 NA N NA
 5651567 5651568 TPASS_0094 TPASS_0095 pta   TRUE 0.826 0.000 0.000 1.000   NA
 5651571 5651572 TPASS_0098 TPASS_0099   smbA TRUE 0.644 4.000 0.000 1.000 N NA
 5651573 5651574 TPASS_0100 TPASS_0101   ccdA TRUE 0.995 -7.000 0.500 1.000 Y NA
 5651576 5651577 TPASS_0103 TPASS_0104   ushA FALSE 0.058 247.000 0.000 1.000 N NA
 5651577 5651578 TPASS_0104 TPASS_0105 ushA polA FALSE 0.060 167.000 0.000 1.000 N NA
 5651579 5651580 TPASS_0106 TPASS_0107   licC TRUE 0.977 -19.000 0.049 1.000 Y NA
 5651580 5651581 TPASS_0107 TPASS_0108 licC pfk FALSE 0.057 354.000 0.000 1.000 N NA
 5651581 5651582 TPASS_0108 TPASS_0109 pfk   FALSE 0.067 102.000 0.000 1.000 N NA
 5651583 5651584 TPASS_t0006 TPASS_t0007     TRUE 0.869 10.000 0.000 NA   NA
 5651584 5651585 TPASS_t0007 TPASS_t0008     FALSE 0.387 37.000 0.000 NA   NA
 5651585 5651586 TPASS_t0008 TPASS_0110     TRUE 0.707 22.000 0.000 NA   NA
 5651586 5651587 TPASS_0110 TPASS_0111   rpoN FALSE 0.249 60.000 0.000 NA   NA
 5651589 5651590 TPASS_0113 TPASS_0114 hflK hflC TRUE 0.999 5.000 0.947 0.026 Y NA
 5651593 5651594 TPASS_0117 TPASS_0118 tprC   FALSE 0.240 80.000 0.000 NA   NA
 5651594 5651595 TPASS_0118 TPASS_0119   yaeE FALSE 0.230 98.000 0.000 NA   NA
 5651595 5651596 TPASS_0119 TPASS_0120 yaeE   TRUE 0.998 0.000 0.274 1.000 Y NA
 5651599 5651600 TPASS_0123 TPASS_0124     TRUE 0.764 14.000 0.000 1.000   NA
 5651600 5651601 TPASS_0124 TPASS_0125   exoA FALSE 0.390 77.000 0.000 0.033 N NA
 5651603 5651604 TPASS_0127 TPASS_0128     FALSE 0.199 502.000 0.000 NA   NA
 5651604 5651605 TPASS_0128 TPASS_0129     TRUE 0.679 -15.000 0.000 NA   NA
 5651606 5651607 TPASS_0130 TPASS_0131   tprD FALSE 0.241 72.000 0.000 NA   NA
 5651607 5651608 TPASS_0131 TPASS_0132 tprD   FALSE 0.206 178.000 0.000 NA   NA
 5651608 5651609 TPASS_0132 TPASS_0133     TRUE 0.679 -15.000 0.000 NA   NA
 5651609 5651610 TPASS_0133 TPASS_0134     TRUE 0.838 -3.000 0.000 NA   NA
 5651610 5651611 TPASS_0134 TPASS_0135     FALSE 0.450 -48.000 0.000 NA   NA
 5651612 5651613 TPASS_t0009 TPASS_0136     FALSE 0.219 124.000 0.000 NA   NA
 5651613 5651614 TPASS_0136 TPASS_0137     TRUE 0.599 -21.000 0.000 NA   NA
 5651615 5651616 TPASS_0138 TPASS_0139     TRUE 0.989 8.000 0.042 NA   NA
 5651616 5651617 TPASS_0139 TPASS_0140   ntpJ TRUE 0.991 40.000 0.330 0.007 Y NA
 5651619 5651620 TPASS_0142 TPASS_0143     TRUE 0.941 -7.000 0.011 1.000   NA
 5651620 5651621 TPASS_0143 TPASS_0144     TRUE 0.980 -42.000 0.697 0.027 N NA
 5651622 5651623 TPASS_0145 TPASS_0146     TRUE 0.544 29.000 0.000 NA   NA
 5651624 5651625 TPASS_t0010 TPASS_0147     FALSE 0.199 1249.000 0.000 NA   NA
 5651625 5651626 TPASS_0147 TPASS_0148     TRUE 0.838 -3.000 0.000 NA   NA
 5651626 5651627 TPASS_0148 TPASS_0149     TRUE 0.773 -6.000 0.000 NA   NA
 5651627 5651628 TPASS_0149 TPASS_0150     TRUE 0.749 -7.000 0.000 NA   NA
 5651628 5651629 TPASS_0150 TPASS_0151     TRUE 0.661 -16.000 0.000 NA   NA
 5651629 5651630 TPASS_0151 TPASS_0152   rnfC TRUE 0.992 -13.000 0.235 1.000 Y NA
 5651630 5651631 TPASS_0152 TPASS_0153 rnfC   FALSE 0.178 76.000 0.000 1.000   NA
 5651632 5651633 TPASS_0154 TPASS_0155     TRUE 0.640 6.000 0.000 1.000 N NA
 5651634 5651635 TPASS_0156 TPASS_0157     TRUE 0.778 -3.000 0.000 1.000   NA
 5651635 5651636 TPASS_0157 TPASS_0158     TRUE 0.939 -3.000 0.000 0.035   NA
 5651636 5651637 TPASS_0158 TPASS_0159     TRUE 0.881 4.000 0.000 NA   NA
 5651637 5651638 TPASS_0159 TPASS_0160   proS TRUE 0.603 116.000 0.006 NA   NA
 5651638 5651639 TPASS_0160 TPASS_0161 proS   TRUE 0.880 3.000 0.000 NA   NA
 5651639 5651640 TPASS_0161 TPASS_0162   ruvB TRUE 0.781 17.000 0.000 NA   NA
 5651641 5651642 TPASS_0163 TPASS_0164 troA troB TRUE 0.944 148.000 0.898 1.000 Y NA
 5651642 5651643 TPASS_0164 TPASS_0165 troB troC TRUE 0.989 -28.000 0.432 1.000 Y NA
 5651643 5651644 TPASS_0165 TPASS_0166 troC troD TRUE 0.999 4.000 0.443 0.004 Y NA
 5651644 5651645 TPASS_0166 TPASS_0167 troD troR TRUE 0.972 10.000 0.020 1.000 N NA
 5651645 5651646 TPASS_0167 TPASS_0168 troR pgm FALSE 0.071 80.000 0.000 1.000 N NA
 5651646 5651647 TPASS_0168 TPASS_t0011 pgm   FALSE 0.219 126.000 0.000 NA   NA
 5651647 5651648 TPASS_t0011 TPASS_0169     TRUE 0.619 26.000 0.000 NA   NA
 5651648 5651649 TPASS_0169 TPASS_0170   pfs TRUE 0.838 -3.000 0.000 NA   NA
 5651649 5651650 TPASS_0170 TPASS_0171 pfs tpp15 FALSE 0.168 100.000 0.000 1.000   NA
 5651651 5651652 TPASS_0172 TPASS_0173     FALSE 0.413 35.000 0.000 NA   NA
 5651652 5651653 TPASS_0173 TPASS_0174     TRUE 0.522 -31.000 0.000 NA   NA
 5651653 5651654 TPASS_0174 TPASS_0175     FALSE 0.367 -250.000 0.000 NA   NA
 5651654 5651655 TPASS_0175 TPASS_0176     TRUE 0.489 31.000 0.000 NA   NA
 5651655 5651656 TPASS_0176 TPASS_0177     TRUE 0.838 -3.000 0.000 NA   NA
 5651656 5651657 TPASS_0177 TPASS_0178     TRUE 0.901 94.000 1.000 NA   NA
 5651657 5651658 TPASS_0178 TPASS_0179     TRUE 0.875 0.000 0.000 NA   NA
 5651658 5651659 TPASS_0179 TPASS_0180     FALSE 0.437 -58.000 0.000 NA   NA
 5651660 5651661 TPASS_0181 TPASS_0182     FALSE 0.229 -160.000 0.000 NA N NA
 5651662 5651663 TPASS_0183 TPASS_0184   smpB TRUE 0.975 5.000 0.006 NA   NA
 5651664 5651665 TPASS_0185 TPASS_0186 sip   TRUE 0.622 55.000 0.007 1.000   NA
 5651665 5651666 TPASS_0186 TPASS_0187   tuf FALSE 0.072 64.000 0.000 1.000 N NA
 5651666 5651667 TPASS_0187 TPASS_0188 tuf rpsJ TRUE 0.954 72.000 0.318 1.000 Y NA
 5651667 5651668 TPASS_0188 TPASS_0189 rpsJ rplC TRUE 0.982 47.000 0.307 0.070 Y NA
 5651668 5651669 TPASS_0189 TPASS_0190 rplC rplD TRUE 0.996 14.000 0.040 0.052 Y NA
 5651669 5651670 TPASS_0190 TPASS_0191 rplD rplW TRUE 0.993 -13.000 0.307 1.000 Y NA
 5651670 5651671 TPASS_0191 TPASS_0192 rplW rplB TRUE 0.958 56.000 0.849 1.000 Y NA
 5651671 5651672 TPASS_0192 TPASS_0193 rplB rpsS TRUE 0.999 10.000 0.820 0.070 Y NA
 5651672 5651673 TPASS_0193 TPASS_0194 rpsS rplV TRUE 0.999 9.000 0.769 0.070 Y NA
 5651673 5651674 TPASS_0194 TPASS_0195 rplV rpsC TRUE 0.996 -16.000 0.719 0.070 Y NA
 5651674 5651675 TPASS_0195 TPASS_0196 rpsC rplP TRUE 0.999 4.000 0.828 0.070 Y NA
 5651675 5651676 TPASS_0196 TPASS_0197 rplP rpmC TRUE 0.998 15.000 0.802 0.052 Y NA
 5651676 5651677 TPASS_0197 TPASS_0198 rpmC rpsQ TRUE 0.998 15.000 0.828 0.052 Y NA
 5651677 5651678 TPASS_0198 TPASS_0199 rpsQ rplN TRUE 0.999 13.000 0.791 0.070 Y NA
 5651678 5651679 TPASS_0199 TPASS_0200 rplN rplX TRUE 0.999 12.000 0.810 0.070 Y NA
 5651679 5651680 TPASS_0200 TPASS_0201 rplX rplE TRUE 0.999 -3.000 0.758 0.052 Y NA
 5651680 5651681 TPASS_0201 TPASS_0202 rplE rpsN TRUE 0.999 12.000 0.496 0.052 Y NA
 5651681 5651682 TPASS_0202 TPASS_0203 rpsN rpsH TRUE 0.998 16.000 0.473 0.052 Y NA
 5651682 5651683 TPASS_0203 TPASS_0204 rpsH rplF TRUE 0.999 10.000 0.808 0.052 Y NA
 5651683 5651684 TPASS_0204 TPASS_0205 rplF rplR TRUE 0.999 9.000 0.815 0.052 Y NA
 5651684 5651685 TPASS_0205 TPASS_0206a rplR rpsE TRUE 0.999 9.000 0.814 0.070 Y NA
 5651685 5651686 TPASS_0206a TPASS_0206b rpsE rpmD TRUE 0.999 3.000 0.789 0.070 Y NA
 5651686 5651687 TPASS_0206b TPASS_0207 rpmD rplO TRUE 0.999 0.000 0.653 0.009 Y NA
 5651687 5651688 TPASS_0207 TPASS_0208 rplO secY TRUE 0.994 8.000 0.730 1.000 N NA
 5651688 5651689 TPASS_0208 TPASS_0209 secY rpmJ1 TRUE 0.990 5.000 0.089 1.000   NA
 5651689 5651690 TPASS_0209 TPASS_0210 rpmJ1 rpsM TRUE 0.994 16.000 0.194 0.052   NA
 5651690 5651691 TPASS_0210 TPASS_0211 rpsM rpsK TRUE 0.998 18.000 0.810 0.052 Y NA
 5651691 5651692 TPASS_0211 TPASS_0212 rpsK rpoA TRUE 0.989 15.000 0.308 1.000 N NA
 5651692 5651693 TPASS_0212 TPASS_0213 rpoA rplQ TRUE 0.980 -10.000 0.873 1.000 N NA
 5651693 5651694 TPASS_0213 TPASS_0214 rplQ   TRUE 0.902 24.000 0.005 NA   NA
 5651694 5651695 TPASS_0214 TPASS_0215   grpE FALSE 0.204 206.000 0.000 NA   NA
 5651695 5651696 TPASS_0215 TPASS_0216 grpE dnaK TRUE 0.976 116.000 0.224 0.016 Y NA
 5651696 5651697 TPASS_0216 TPASS_0217 dnaK dnaJ FALSE 0.220 121.000 0.000 NA   NA
 5651697 5651698 TPASS_0217 TPASS_0218 dnaJ   FALSE 0.207 177.000 0.000 NA   NA
 5651698 5651699 TPASS_0218 TPASS_0219     TRUE 0.999 4.000 0.857 0.004 Y NA
 5651699 5651700 TPASS_0219 TPASS_0220   spoIIAA1 TRUE 0.965 29.000 0.034 1.000 Y NA
 5651700 5651701 TPASS_0220 TPASS_0221 spoIIAA1   TRUE 0.980 1.000 0.034 1.000 N NA
 5651701 5651702 TPASS_0221 TPASS_0222     TRUE 0.869 10.000 0.000 NA   NA
 5651702 5651703 TPASS_0222 TPASS_0223     FALSE 0.201 268.000 0.000 NA   NA
 5651703 5651704 TPASS_0223 TPASS_0224     FALSE 0.387 37.000 0.000 NA   NA
 5651704 5651705 TPASS_0224 TPASS_0225     FALSE 0.305 46.000 0.000 NA   NA
 5651705 5651706 TPASS_0225 TPASS_r0001   rrs1 FALSE 0.202 245.000 0.000 NA   NA
 5651706 5651707 TPASS_r0001 TPASS_t0012 rrs1   FALSE 0.227 105.000 0.000 NA   NA
 5651707 5651708 TPASS_t0012 TPASS_r0002   rrl1 FALSE 0.223 116.000 0.000 NA   NA
 5651708 5651709 TPASS_r0002 TPASS_r0003 rrl1 rrf1 FALSE 0.283 50.000 0.000 NA   NA
 5651710 5651711 TPASS_0226 TPASS_0227     FALSE 0.269 53.000 0.000 NA   NA
 5651711 5651712 TPASS_0227 TPASS_0228     TRUE 0.919 67.000 0.667 NA   NA
 5651713 5651714 TPASS_0229 TPASS_0230   priA TRUE 0.991 5.000 0.013 1.000 Y NA
 5651714 5651715 TPASS_0230 TPASS_0231 priA   FALSE 0.067 101.000 0.000 1.000 N NA
 5651715 5651716 TPASS_0231 TPASS_0232     FALSE 0.230 100.000 0.000 NA   NA
 5651716 5651717 TPASS_0232 TPASS_0233     TRUE 0.489 31.000 0.000 NA   NA
 5651717 5651718 TPASS_0233 TPASS_t0013     FALSE 0.216 134.000 0.000 NA   NA
 5651718 5651719 TPASS_t0013 TPASS_0234   rpmG TRUE 0.544 29.000 0.000 NA   NA
 5651719 5651720 TPASS_0234 TPASS_t0014 rpmG   FALSE 0.266 55.000 0.000 NA   NA
 5651720 5651721 TPASS_t0014 TPASS_0235   secE TRUE 0.676 23.000 0.000 NA   NA
 5651721 5651722 TPASS_0235 TPASS_0236 secE nusG TRUE 0.619 10.000 0.000 1.000 N NA
 5651722 5651723 TPASS_0236 TPASS_0237 nusG rplK TRUE 0.867 107.000 0.681 1.000 N NA
 5651723 5651724 TPASS_0237 TPASS_0238 rplK rplA TRUE 0.999 -3.000 0.838 0.069 Y NA
 5651724 5651725 TPASS_0238 TPASS_0239 rplA rplJ TRUE 0.999 2.000 0.302 0.069 Y NA
 5651725 5651726 TPASS_0239 TPASS_0240 rplJ rplL TRUE 0.976 109.000 0.884 0.051 Y NA
 5651726 5651727 TPASS_0240 TPASS_0241 rplL rpoB TRUE 0.803 263.000 0.223 1.000 N NA
 5651727 5651728 TPASS_0241 TPASS_0242 rpoB rpoC TRUE 0.999 13.000 0.851 0.004 Y NA
 5651728 5651729 TPASS_0242 TPASS_0243 rpoC rpsL TRUE 0.672 103.000 0.035 1.000 N NA
 5651729 5651730 TPASS_0243 TPASS_0244 rpsL rpsG TRUE 0.997 22.000 0.224 0.010 Y NA
 5651730 5651731 TPASS_0244 TPASS_0245 rpsG   TRUE 0.655 24.000 0.000 NA   NA
 5651731 5651732 TPASS_0245 TPASS_0246     FALSE 0.212 146.000 0.000 NA   NA
 5651732 5651733 TPASS_0246 TPASS_0247   amiA FALSE 0.277 51.000 0.000 NA   NA
 5651733 5651734 TPASS_0247 TPASS_0248 amiA   FALSE 0.240 67.000 0.000 NA   NA
 5651734 5651735 TPASS_0248 TPASS_0249   flaA1 FALSE 0.241 79.000 0.000 NA   NA
 5651735 5651736 TPASS_0249 TPASS_0250a flaA1   FALSE 0.277 51.000 0.000 NA   NA
 5651736 5651737 TPASS_0250a TPASS_0250b   rpsT FALSE 0.376 -165.000 0.000 NA   NA
 5651737 5651738 TPASS_0250b TPASS_0251 rpsT   FALSE 0.173 32.000 0.000 1.000 N NA
 5651738 5651739 TPASS_0251 TPASS_0252     FALSE 0.379 -10.000 0.000 1.000 N NA
 5651739 5651740 TPASS_0252 TPASS_0253     TRUE 0.991 -9.000 0.095 NA Y NA
 5651740 5651741 TPASS_0253 TPASS_0254   rho TRUE 0.536 237.000 0.010 NA N NA
 5651741 5651742 TPASS_0254 TPASS_0255 rho rpmE TRUE 0.758 119.000 0.115 1.000 N NA
 5651742 5651743 TPASS_0255 TPASS_0256 rpmE pgsA FALSE 0.099 45.000 0.000 1.000 N NA
 5651743 5651744 TPASS_0256 TPASS_0257 pgsA glpQ FALSE 0.068 97.000 0.000 1.000 N NA
 5651748 5651749 TPASS_0261 TPASS_0262   crp TRUE 0.805 -22.000 0.000 1.000 Y NA
 5651749 5651750 TPASS_0262 TPASS_0263 crp   TRUE 0.816 15.000 0.000 NA   NA
 5651750 5651751 TPASS_0263 TPASS_0264   deoC TRUE 0.881 5.000 0.000 NA   NA
 5651753 5651754 TPASS_0266 TPASS_r0004   rrs2 FALSE 0.212 148.000 0.000 NA   NA
 5651754 5651755 TPASS_r0004 TPASS_t0015 rrs2   FALSE 0.228 104.000 0.000 NA   NA
 5651755 5651756 TPASS_t0015 TPASS_r0005   rrl2 FALSE 0.223 117.000 0.000 NA   NA
 5651756 5651757 TPASS_r0005 TPASS_r0006 rrl2 rrf2 FALSE 0.261 56.000 0.000 NA   NA
 5651757 5651758 TPASS_r0006 TPASS_0267 rrf2   FALSE 0.217 132.000 0.000 NA   NA
 5651758 5651759 TPASS_0267 TPASS_0268     TRUE 0.995 -3.000 0.619 NA   NA
 5651759 5651760 TPASS_0268 TPASS_0269     TRUE 0.973 10.000 0.012 1.000   NA
 5651760 5651761 TPASS_0269 TPASS_0270   pcnA TRUE 0.488 74.000 0.000 1.000 Y NA
 5651762 5651763 TPASS_0271 TPASS_0272 parB parA TRUE 0.979 -13.000 0.827 1.000 N NA
 5651765 5651766 TPASS_0274 TPASS_0275     FALSE 0.069 89.000 0.000 1.000 N NA
 5651766 5651767 TPASS_0275 TPASS_0276     TRUE 0.917 -21.000 0.015 NA   NA
 5651767 5651768 TPASS_0276 TPASS_0277   ctp TRUE 0.745 173.000 0.033 NA   NA
 5651769 5651770 TPASS_0278 TPASS_0279   rpsA FALSE 0.305 46.000 0.000 NA   NA
 5651770 5651771 TPASS_0279 TPASS_0280 rpsA   TRUE 0.838 -3.000 0.000 NA   NA
 5651771 5651772 TPASS_0280 TPASS_0281     TRUE 0.781 17.000 0.000 NA   NA
 5651772 5651773 TPASS_0281 TPASS_0282     TRUE 0.749 -7.000 0.000 NA   NA
 5651773 5651774 TPASS_0282 TPASS_0283   kdtB FALSE 0.150 178.000 0.000 1.000   NA
 5651774 5651775 TPASS_0283 TPASS_0284 kdtB   FALSE 0.227 105.000 0.000 NA   NA
 5651775 5651776 TPASS_0284 TPASS_0285     FALSE 0.431 -60.000 0.000 NA   NA
 5651776 5651777 TPASS_0285 TPASS_0286     TRUE 0.969 -28.000 0.222 NA   NA
 5651777 5651778 TPASS_0286 TPASS_0287     TRUE 0.508 -33.000 0.000 NA   NA
 5651778 5651779 TPASS_0287 TPASS_0288   spsF TRUE 0.995 0.000 0.278 NA   NA
 5651779 5651780 TPASS_0288 TPASS_0289 spsF   TRUE 0.676 23.000 0.000 NA   NA
 5651780 5651781 TPASS_0289 TPASS_0290     FALSE 0.266 55.000 0.000 NA   NA
 5651781 5651782 TPASS_0290 TPASS_0291     FALSE 0.300 37.000 0.000 1.000   NA
 5651782 5651783 TPASS_0291 TPASS_0292   tpn50 FALSE 0.391 -9.000 0.000 1.000 N NA
 5651783 5651784 TPASS_0292 TPASS_0293 tpn50   TRUE 0.854 12.000 0.000 NA   NA
 5651784 5651785 TPASS_0293 TPASS_0294   prs TRUE 0.580 -22.000 0.000 NA   NA
 5651785 5651786 TPASS_0294 TPASS_0295 prs xylB TRUE 0.972 19.000 0.134 1.000 N NA
 5651786 5651787 TPASS_0295 TPASS_0296 xylB   FALSE 0.070 86.000 0.000 1.000 N NA
 5651787 5651788 TPASS_0296 TPASS_0297     TRUE 0.783 -36.000 0.002 NA   NA
 5651788 5651789 TPASS_0297 TPASS_0298   tpn38b FALSE 0.216 133.000 0.000 NA   NA
 5651789 5651790 TPASS_0298 TPASS_0299 tpn38b   TRUE 0.838 -3.000 0.000 NA   NA
 5651790 5651791 TPASS_0299 TPASS_0300   rbsA1 TRUE 0.679 -15.000 0.000 NA   NA
 5651791 5651792 TPASS_0300 TPASS_0301 rbsA1   TRUE 0.990 -3.000 0.188 1.000   NA
 5651792 5651793 TPASS_0301 TPASS_0302     TRUE 0.995 -9.000 0.471 0.025   NA
 5651794 5651795 TPASS_0303 TPASS_0304 mutL   TRUE 0.840 13.000 0.000 NA   NA
 5651796 5651797 TPASS_0305 TPASS_0306 pyrG rpsD FALSE 0.061 165.000 0.000 1.000 N NA
 5651797 5651798 TPASS_0306 TPASS_0307 rpsD   FALSE 0.173 87.000 0.000 1.000   NA
 5651798 5651799 TPASS_0307 TPASS_0308   hisJ TRUE 0.467 -25.000 0.000 1.000   NA
 5651799 5651800 TPASS_0308 TPASS_0309 hisJ   TRUE 0.764 66.000 0.000 0.013 Y NA
 5651800 5651801 TPASS_0309 TPASS_0310     FALSE 0.210 -31.000 0.000 1.000 N NA
 5651803 5651804 TPASS_0312 TPASS_0313   tprE FALSE 0.233 91.000 0.000 NA   NA
 5651805 5651806 TPASS_0314 TPASS_0315     TRUE 0.676 23.000 0.000 NA   NA
 5651806 5651807 TPASS_0315 TPASS_0316   tprF TRUE 0.773 -6.000 0.000 NA   NA
 5651807 5651808 TPASS_0316 TPASS_0317 tprF tprG FALSE 0.252 59.000 0.000 NA   NA
 5651808 5651809 TPASS_0317 TPASS_0318 tprG   FALSE 0.450 -48.000 0.000 NA   NA
 5651810 5651811 TPASS_0319 TPASS_0320 tmpC   TRUE 0.869 10.000 0.000 NA   NA
 5651811 5651812 TPASS_0320 TPASS_0321   rbsA2 FALSE 0.242 76.000 0.000 NA   NA
 5651812 5651813 TPASS_0321 TPASS_0322 rbsA2 rbsC1 TRUE 0.953 -90.000 0.438 1.000   NA
 5651813 5651814 TPASS_0322 TPASS_0323 rbsC1 rbsC2 TRUE 0.997 -3.000 0.720 0.025   NA
 5651814 5651815 TPASS_0323 TPASS_0324 rbsC2   FALSE 0.228 104.000 0.000 NA   NA
 5651815 5651816 TPASS_0324 TPASS_0325     TRUE 0.638 -18.000 0.000 NA   NA
 5651816 5651817 TPASS_0325 TPASS_0326     TRUE 0.897 -18.000 0.005 NA   NA
 5651817 5651818 TPASS_0326 TPASS_0327   ompH TRUE 0.927 57.000 0.123 1.000 Y NA
 5651818 5651819 TPASS_0327 TPASS_0328 ompH mutS TRUE 0.748 56.000 0.062 1.000 N NA
 5651819 5651820 TPASS_0328 TPASS_0329 mutS glyA FALSE 0.065 118.000 0.000 1.000 N NA
 5651821 5651822 TPASS_t0016 TPASS_0330     FALSE 0.233 92.000 0.000 NA   NA
 5651822 5651823 TPASS_0330 TPASS_t0017     FALSE 0.240 65.000 0.000 NA   NA
 5651823 5651824 TPASS_t0017 TPASS_0331   gnd FALSE 0.232 94.000 0.000 NA   NA
 5651825 5651826 TPASS_0332 TPASS_0333     FALSE 0.372 38.000 0.000 NA   NA
 5651826 5651827 TPASS_0333 TPASS_0334     TRUE 0.976 25.000 0.238 1.000   NA
 5651829 5651830 TPASS_0336 TPASS_0337   ksgA TRUE 0.927 -19.000 0.016 NA   NA
 5651830 5651831 TPASS_0337 TPASS_0338 ksgA   TRUE 0.926 18.000 0.002 NA   NA
 5651831 5651832 TPASS_0338 TPASS_0339     TRUE 0.972 12.000 0.009 NA   NA
 5651834 5651835 TPASS_0341 TPASS_0342 murC cmk FALSE 0.064 121.000 0.000 1.000 N NA
 5651835 5651836 TPASS_0342 TPASS_0343 cmk   TRUE 0.879 -6.000 0.002 1.000 N NA
 5651838 5651839 TPASS_0345 TPASS_0346 mraY   FALSE 0.210 157.000 0.000 NA   NA
 5651839 5651840 TPASS_0346 TPASS_0347     TRUE 0.522 -31.000 0.000 NA   NA
 5651841 5651842 TPASS_0348 TPASS_0349   slyD TRUE 0.975 -30.000 0.333 NA   NA
 5651843 5651844 TPASS_0350 TPASS_0351 proA proB TRUE 0.999 -3.000 0.281 0.004 Y NA
 5651844 5651845 TPASS_0351 TPASS_0352 proB   FALSE 0.217 132.000 0.000 NA   NA
 5651849 5651850 TPASS_0356 TPASS_0357   birA FALSE 0.167 102.000 0.000 1.000   NA
 5651851 5651852 TPASS_0358 TPASS_0359     TRUE 0.987 12.000 0.051 NA   NA
 5651855 5651856 TPASS_0362 TPASS_0363 rpmB cheA FALSE 0.144 492.000 0.000 1.000   NA
 5651856 5651857 TPASS_0363 TPASS_0364 cheA cheW1 TRUE 0.996 -6.000 0.436 0.020   NA
 5651857 5651858 TPASS_0364 TPASS_0365 cheW1 cheX TRUE 0.995 22.000 0.436 NA Y NA
 5651858 5651859 TPASS_0365 TPASS_0366 cheX cheY TRUE 0.986 13.000 0.125 NA N NA
 5651859 5651860 TPASS_0366 TPASS_0367 cheY   FALSE 0.058 304.000 0.000 1.000 N NA
 5651860 5651861 TPASS_0367 TPASS_0368     TRUE 0.875 0.000 0.000 NA   NA
 5651861 5651862 TPASS_0368 TPASS_0369     TRUE 0.995 -3.000 0.429 NA   NA
 5651864 5651865 TPASS_0371 TPASS_t0018     TRUE 0.876 9.000 0.000 NA   NA
 5651865 5651866 TPASS_t0018 TPASS_0372   ctc FALSE 0.338 41.000 0.000 NA   NA
 5651866 5651867 TPASS_0372 TPASS_0373 ctc   TRUE 0.684 60.000 0.006 0.074 N NA
 5651867 5651868 TPASS_0373 TPASS_0374     TRUE 0.717 -64.000 0.004 1.000   NA
 5651868 5651869 TPASS_0374 TPASS_0375     FALSE 0.210 158.000 0.000 NA   NA
 5651871 5651872 TPASS_0377 TPASS_0378     TRUE 0.838 -3.000 0.000 NA   NA
 5651873 5651874 TPASS_0379 TPASS_0380 secA   FALSE 0.066 107.000 0.000 1.000 N NA
 5651874 5651875 TPASS_0380 TPASS_0381     FALSE 0.215 138.000 0.000 NA   NA
 5651876 5651877 TPASS_0382 TPASS_0383     TRUE 0.582 28.000 0.000 NA   NA
 5651877 5651878 TPASS_0383 TPASS_0384     TRUE 0.995 -3.000 0.635 NA   NA
 5651878 5651879 TPASS_0384 TPASS_0385     TRUE 0.968 13.000 0.008 NA   NA
 5651879 5651880 TPASS_0385 TPASS_0386   murF TRUE 0.971 -16.000 0.096 NA   NA
 5651880 5651881 TPASS_0386 TPASS_0387 murF ftsW TRUE 0.992 -3.000 0.060 0.010 N NA
 5651881 5651882 TPASS_0387 TPASS_0388 ftsW ftsQ TRUE 0.860 -22.000 0.010 NA N NA
 5651882 5651883 TPASS_0388 TPASS_0389 ftsQ ftsA TRUE 0.993 13.000 0.389 NA N NA
 5651883 5651884 TPASS_0389 TPASS_0390 ftsA ftsZ TRUE 0.970 46.000 0.460 1.000 Y NA
 5651884 5651885 TPASS_0390 TPASS_0391 ftsZ codV TRUE 0.948 -3.000 0.009 1.000 N NA
 5651885 5651886 TPASS_0391 TPASS_0392 codV   FALSE 0.286 -217.000 0.000 1.000   NA
 5651886 5651887 TPASS_0392 TPASS_0393   smf TRUE 0.952 -3.000 0.004 1.000   NA
 5651887 5651888 TPASS_0393 TPASS_0394 smf topA TRUE 0.978 33.000 0.238 1.000 Y NA
 5651888 5651889 TPASS_0394 TPASS_0395 topA xprB TRUE 0.975 -7.000 0.009 1.000 Y NA
 5651889 5651890 TPASS_0395 TPASS_0396 xprB flgB FALSE 0.061 148.000 0.000 1.000 N NA
 5651890 5651891 TPASS_0396 TPASS_0397 flgB flgC TRUE 0.955 85.000 0.804 1.000 Y NA
 5651891 5651892 TPASS_0397 TPASS_0398 flgC fliE TRUE 0.934 56.000 0.156 1.000 Y NA
 5651892 5651893 TPASS_0398 TPASS_0399 fliE fliF TRUE 0.971 117.000 0.164 0.014 Y NA
 5651893 5651894 TPASS_0399 TPASS_0400 fliF fliG2 TRUE 0.999 5.000 0.477 0.014 Y NA
 5651894 5651895 TPASS_0400 TPASS_0401 fliG2 fliH TRUE 0.963 48.000 0.308 1.000 Y NA
 5651895 5651896 TPASS_0401 TPASS_0402 fliH fliI TRUE 0.981 28.000 0.124 1.000 Y NA
 5651896 5651897 TPASS_0402 TPASS_0403 fliI   TRUE 0.959 29.000 0.022 1.000 Y NA
 5651898 5651899 TPASS_0404 TPASS_0405     TRUE 0.960 -3.000 0.004 NA   NA
 5651900 5651901 TPASS_0406 TPASS_0407 murI gph1 FALSE 0.159 128.000 0.000 1.000   NA
 5651901 5651902 TPASS_0407 TPASS_0408 gph1   FALSE 0.177 79.000 0.000 1.000   NA
 5651902 5651903 TPASS_0408 TPASS_0409     FALSE 0.352 40.000 0.000 NA   NA
 5651903 5651904 TPASS_0409 TPASS_0410   secD FALSE 0.202 265.000 0.000 NA   NA
 5651904 5651905 TPASS_0410 TPASS_0411 secD secF TRUE 0.998 -3.000 0.244 0.002   NA
 5651906 5651907 TPASS_0412 TPASS_0413     TRUE 0.970 19.000 0.031 NA   NA
 5651908 5651909 TPASS_0414 TPASS_0415 dagA   TRUE 0.619 -19.000 0.000 NA   NA
 5651910 5651911 TPASS_0416 TPASS_0417 ffh cutE FALSE 0.421 -7.000 0.000 1.000 N NA
 5651912 5651913 TPASS_0418 TPASS_0419     TRUE 0.975 -3.000 0.021 1.000   NA
 5651913 5651914 TPASS_0419 TPASS_0420     TRUE 0.619 -19.000 0.000 NA   NA
 5651914 5651915 TPASS_0420 TPASS_0421     FALSE 0.216 134.000 0.000 NA   NA
 5651915 5651916 TPASS_0421 TPASS_0422     TRUE 0.661 -16.000 0.000 NA   NA
 5651916 5651917 TPASS_0422 TPASS_0423     TRUE 0.633 25.000 0.000 NA   NA
 5651917 5651918 TPASS_0423 TPASS_0424     FALSE 0.148 203.000 0.000 1.000   NA
 5651918 5651919 TPASS_0424 TPASS_0425     TRUE 0.580 -22.000 0.000 NA   NA
 5651919 5651920 TPASS_0425 TPASS_0426   atpA1 FALSE 0.213 142.000 0.000 NA   NA
 5651920 5651921 TPASS_0426 TPASS_0427 atpA1 atpB1 TRUE 0.999 4.000 0.806 0.014 Y NA
 5651921 5651922 TPASS_0427 TPASS_0428 atpB1 atpD1 TRUE 0.999 12.000 0.903 0.014 Y NA
 5651922 5651923 TPASS_0428 TPASS_0429 atpD1 atpI1 TRUE 0.999 -3.000 0.270 0.015 Y NA
 5651923 5651924 TPASS_0429 TPASS_0430 atpI1 atpK1 TRUE 0.979 37.000 0.848 0.015   NA
 5651924 5651925 TPASS_0430 TPASS_0431 atpK1   FALSE 0.336 34.000 0.000 1.000   NA
 5651925 5651926 TPASS_0431 TPASS_0432     FALSE 0.320 43.000 0.000 NA   NA
 5651926 5651927 TPASS_0432 TPASS_0433   arp FALSE 0.266 55.000 0.000 NA   NA
 5651928 5651929 TPASS_0435 TPASS_0436 tpp17   FALSE 0.217 131.000 0.000 NA   NA
 5651929 5651930 TPASS_0436 TPASS_0437     TRUE 0.884 -34.000 0.016 NA   NA
 5651931 5651932 TPASS_0438 TPASS_0439   cheW2 FALSE 0.070 87.000 0.000 1.000 N NA
 5651932 5651933 TPASS_0439 TPASS_0440 cheW2   TRUE 0.782 90.000 0.137 1.000 N NA
 5651933 5651934 TPASS_0440 TPASS_0441     TRUE 0.985 -3.000 0.157 1.000 N NA
 5651934 5651935 TPASS_0441 TPASS_0442   recN TRUE 0.921 -7.000 0.012 1.000 N NA
 5651935 5651936 TPASS_0442 TPASS_0443 recN   TRUE 0.828 -58.000 0.010 NA   NA
 5651936 5651937 TPASS_0443 TPASS_0444     TRUE 0.879 6.000 0.000 NA   NA
 5651937 5651938 TPASS_0444 TPASS_0445   thiJ FALSE 0.215 136.000 0.000 NA   NA
 5651938 5651939 TPASS_0445 TPASS_0446 thiJ gcpE FALSE 0.328 42.000 0.000 NA   NA
 5651939 5651940 TPASS_0446 TPASS_0447 gcpE   TRUE 0.778 -3.000 0.000 1.000   NA
 5651940 5651941 TPASS_0447 TPASS_0448     FALSE 0.188 58.000 0.000 1.000   NA
 5651941 5651942 TPASS_0448 TPASS_0449     TRUE 0.834 4.000 0.000 1.000   NA
 5651942 5651943 TPASS_0449 TPASS_0450   fusA1 FALSE 0.157 137.000 0.000 1.000   NA
 5651945 5651946 TPASS_0452 TPASS_0453 ileS   TRUE 0.936 -13.000 0.011 NA   NA
 5651947 5651948 TPASS_0454 TPASS_0455     TRUE 0.994 -3.000 0.368 NA   NA
 5651948 5651949 TPASS_0455 TPASS_0456     FALSE 0.257 57.000 0.000 NA   NA
 5651950 5651951 TPASS_0457 TPASS_0458     FALSE 0.233 91.000 0.000 NA   NA
 5651951 5651952 TPASS_0458 TPASS_0459     TRUE 0.902 29.000 0.028 NA N NA
 5651952 5651953 TPASS_0459 TPASS_0460     FALSE 0.242 43.000 0.000 1.000   NA
 5651953 5651954 TPASS_0460 TPASS_0461     TRUE 0.830 1.000 0.000 1.000   NA
 5651954 5651955 TPASS_0461 TPASS_0462     FALSE 0.204 205.000 0.000 NA   NA
 5651955 5651956 TPASS_0462 TPASS_0463     TRUE 0.881 5.000 0.000 NA   NA
 5651957 5651958 TPASS_0464 TPASS_0465     TRUE 0.958 -3.000 0.004 NA   NA
 5651958 5651959 TPASS_0465 TPASS_0466     TRUE 0.948 -67.000 0.222 NA   NA
 5651961 5651962 TPASS_0468 TPASS_0470     TRUE 0.896 -7.000 0.000 0.041   NA
 5651964 5651965 TPASS_0472 TPASS_0473 uvrC   FALSE 0.242 75.000 0.000 NA   NA
 5651965 5651966 TPASS_0473 TPASS_0474     FALSE 0.240 65.000 0.000 NA   NA
 5651966 5651967 TPASS_0474 TPASS_0475   gpi FALSE 0.214 141.000 0.000 NA   NA
 5651967 5651968 TPASS_0475 TPASS_0476 gpi ack FALSE 0.072 64.000 0.000 1.000 N NA
 5651968 5651969 TPASS_0476 TPASS_0477 ack   FALSE 0.071 67.000 0.000 1.000 N NA
 5651969 5651970 TPASS_0477 TPASS_0478   zwf TRUE 0.937 61.000 0.188 1.000 Y NA
 5651970 5651971 TPASS_0478 TPASS_0479 zwf   FALSE 0.241 73.000 0.000 NA   NA
 5651972 5651973 TPASS_0480 TPASS_0481     TRUE 0.968 32.000 0.724 NA   NA
 5651973 5651974 TPASS_0481 TPASS_0482     TRUE 0.508 -33.000 0.000 NA   NA
 5651975 5651976 TPASS_0483 TPASS_0484     TRUE 0.694 -13.000 0.000 NA   NA
 5651976 5651977 TPASS_0484 TPASS_0485     FALSE 0.397 -106.000 0.000 NA   NA
 5651977 5651978 TPASS_0485 TPASS_0486     TRUE 0.838 -3.000 0.000 NA   NA
 5651978 5651979 TPASS_0486 TPASS_0487     FALSE 0.234 89.000 0.000 NA   NA
 5651980 5651981 TPASS_0488 TPASS_t0019 mcp2   FALSE 0.224 113.000 0.000 NA   NA
 5651981 5651982 TPASS_t0019 TPASS_t0020     TRUE 0.869 10.000 0.000 NA   NA
 5651982 5651983 TPASS_t0020 TPASS_0489     FALSE 0.208 170.000 0.000 NA   NA
 5651983 5651984 TPASS_0489 TPASS_0490     TRUE 0.838 -3.000 0.000 NA   NA
 5651984 5651985 TPASS_0490 TPASS_0491     TRUE 0.878 7.000 0.000 NA   NA
 5651985 5651986 TPASS_0491 TPASS_0492   dnaG TRUE 0.938 24.000 0.017 NA   NA
 5651986 5651987 TPASS_0492 TPASS_0493 dnaG rpoD TRUE 0.990 -3.000 0.299 1.000 N NA
 5651987 5651988 TPASS_0493 TPASS_0494 rpoD   TRUE 0.987 10.000 0.036 NA   NA
 5651988 5651989 TPASS_0494 TPASS_0496     FALSE 0.200 330.000 0.000 NA   NA
 5651989 5651990 TPASS_0496 TPASS_0497   mreB TRUE 0.958 13.000 0.006 1.000   NA
 5651990 5651991 TPASS_0497 TPASS_0498 mreB mreC TRUE 0.994 5.000 0.689 1.000 N NA
 5651991 5651992 TPASS_0498 TPASS_0499 mreC mreD TRUE 0.999 -3.000 0.550 0.008 Y NA
 5651992 5651993 TPASS_0499 TPASS_0500 mreD pbp1 TRUE 0.996 1.000 0.133 1.000 Y NA
 5651993 5651994 TPASS_0500 TPASS_0501 pbp1 rodA TRUE 0.989 -3.000 0.161 1.000   NA
 5651994 5651995 TPASS_0501 TPASS_0502 rodA   TRUE 0.619 26.000 0.000 NA   NA
 5651995 5651996 TPASS_0502 TPASS_0503     TRUE 0.599 -21.000 0.000 NA   NA
 5651996 5651997 TPASS_0503 TPASS_0504     TRUE 0.638 -18.000 0.000 NA   NA
 5651999 5652000 TPASS_t0021 TPASS_t0022     FALSE 0.249 60.000 0.000 NA   NA
 5652000 5652001 TPASS_t0022 TPASS_t0023     TRUE 0.862 11.000 0.000 NA   NA
 5652001 5652002 TPASS_t0023 TPASS_0506   tig FALSE 0.239 81.000 0.000 NA   NA
 5652002 5652003 TPASS_0506 TPASS_0507 tig clpP1 TRUE 0.995 -7.000 0.351 1.000 Y NA
 5652003 5652004 TPASS_0507 TPASS_0508 clpP1 clpX TRUE 0.994 -13.000 0.352 1.000 Y NA
 5652004 5652005 TPASS_0508 TPASS_0509 clpX ahpC TRUE 0.474 97.000 0.000 1.000 Y NA
 5652007 5652008 TPASS_0511 TPASS_0512 carD   TRUE 0.957 -3.000 0.014 1.000 N NA
 5652008 5652009 TPASS_0512 TPASS_0513   trkA FALSE 0.072 74.000 0.000 1.000 N NA
 5652009 5652010 TPASS_0513 TPASS_0514 trkA uvrA FALSE 0.066 114.000 0.000 1.000 N NA
 5652010 5652011 TPASS_0514 TPASS_0515 uvrA   TRUE 0.960 -3.000 0.017 1.000 N NA
 5652012 5652013 TPASS_0516 TPASS_0517 mviN ruvC TRUE 0.778 -3.000 0.000 1.000   NA
 5652013 5652014 TPASS_0517 TPASS_0518 ruvC   FALSE 0.301 -18.000 0.000 1.000 N NA
 5652014 5652015 TPASS_0518 TPASS_0519   atoC TRUE 0.558 -3.000 0.000 1.000 N NA
 5652015 5652016 TPASS_0519 TPASS_0520 atoC   TRUE 0.869 10.000 0.000 NA   NA
 5652016 5652017 TPASS_0520 TPASS_0521     TRUE 0.838 -3.000 0.000 NA   NA
 5652017 5652018 TPASS_0521 TPASS_0522     TRUE 0.980 11.000 0.023 1.000   NA
 5652018 5652019 TPASS_0522 TPASS_0523   murG TRUE 0.978 -3.000 0.026 1.000   NA
 5652019 5652020 TPASS_0523 TPASS_0524 murG lon2 TRUE 0.644 4.000 0.000 1.000 N NA
 5652021 5652022 TPASS_0525 TPASS_0526 efp hrpA FALSE 0.061 148.000 0.000 1.000 N NA
 5652023 5652024 TPASS_0527 TPASS_0528 atpD2 atpB2 TRUE 0.981 95.000 0.298 0.014 Y NA
 5652024 5652025 TPASS_0528 TPASS_0529 atpB2 atpA2 TRUE 0.999 -3.000 0.355 0.014 Y NA
 5652025 5652026 TPASS_0529 TPASS_0530 atpA2   TRUE 0.995 -3.000 0.101 0.014   NA
 5652026 5652027 TPASS_0530 TPASS_0531     TRUE 0.997 6.000 0.163 0.014   NA
 5652027 5652028 TPASS_0531 TPASS_0532   atpK2 TRUE 0.879 2.000 0.000 NA   NA
 5652028 5652029 TPASS_0532 TPASS_0533 atpK2 atpI2 FALSE 0.210 152.000 0.000 NA   NA
 5652029 5652030 TPASS_0533 TPASS_0534 atpI2   TRUE 0.997 -7.000 0.212 0.017 Y NA
 5652030 5652031 TPASS_0534 TPASS_0535     TRUE 0.881 4.000 0.000 NA   NA
 5652031 5652032 TPASS_0535 TPASS_0536     FALSE 0.214 141.000 0.000 NA   NA
 5652032 5652033 TPASS_0536 TPASS_0537   tpi TRUE 0.665 150.000 0.044 1.000 N NA
 5652033 5652034 TPASS_0537 TPASS_0538 tpi pgk TRUE 0.913 151.000 0.141 1.000 Y NA
 5652035 5652036 TPASS_0539 TPASS_t0024     TRUE 0.707 22.000 0.000 NA   NA
 5652036 5652037 TPASS_t0024 TPASS_0540   spoIIAA2 FALSE 0.205 187.000 0.000 NA   NA
 5652037 5652038 TPASS_0540 TPASS_0541 spoIIAA2 era FALSE 0.158 130.000 0.000 1.000   NA
 5652039 5652040 TPASS_0542 TPASS_0543   ruvA FALSE 0.075 60.000 0.000 1.000 N NA
 5652040 5652041 TPASS_0543 TPASS_0544 ruvA   FALSE 0.328 42.000 0.000 NA   NA
 5652041 5652042 TPASS_0544 TPASS_0545   mglB1 TRUE 0.633 25.000 0.000 NA   NA
 5652042 5652043 TPASS_0545 TPASS_0546 mglB1   FALSE 0.131 85.000 0.000 NA N NA
 5652043 5652044 TPASS_0546 TPASS_0547   lytB FALSE 0.122 -288.000 0.000 1.000 N NA
 5652045 5652046 TPASS_0548 TPASS_0549   clpC FALSE 0.169 98.000 0.000 1.000   NA
 5652047 5652048 TPASS_0550 TPASS_0551 thdF   TRUE 0.834 4.000 0.000 1.000   NA
 5652048 5652049 TPASS_0551 TPASS_0552     TRUE 0.840 13.000 0.000 NA   NA
 5652049 5652050 TPASS_0552 TPASS_t0025     FALSE 0.242 76.000 0.000 NA   NA
 5652051 5652052 TPASS_0553 TPASS_0554   gph2 FALSE 0.413 35.000 0.000 NA   NA
 5652053 5652054 TPASS_0555 TPASS_0556   asnA FALSE 0.059 223.000 0.000 1.000 N NA
 5652055 5652056 TPASS_0557 TPASS_0558     TRUE 0.948 30.000 0.100 NA   NA
 5652056 5652057 TPASS_0558 TPASS_0559     FALSE 0.179 62.000 0.000 1.000   NA
 5652058 5652059 TPASS_0560 TPASS_0561 tktA   FALSE 0.224 111.000 0.000 NA   NA
 5652060 5652061 TPASS_0562 TPASS_0563 spsE   TRUE 0.937 -9.000 0.012 1.000   NA
 5652061 5652062 TPASS_0563 TPASS_0564     TRUE 0.994 -3.000 0.286 NA   NA
 5652063 5652064 TPASS_0565 TPASS_0566   algI TRUE 0.994 11.000 0.244 NA   NA
 5652064 5652065 TPASS_0566 TPASS_0567 algI   TRUE 0.892 32.000 0.023 NA   NA
 5652065 5652066 TPASS_0567 TPASS_0568   eda FALSE 0.241 79.000 0.000 NA   NA
 5652066 5652067 TPASS_0568 TPASS_0569 eda   FALSE 0.160 122.000 0.000 1.000   NA
 5652067 5652068 TPASS_0569 TPASS_0570     TRUE 0.633 25.000 0.000 NA   NA
 5652068 5652069 TPASS_0570 TPASS_0571     TRUE 0.970 27.000 0.169 NA   NA
 5652069 5652070 TPASS_0571 TPASS_0572     TRUE 0.769 18.000 0.000 NA   NA
 5652073 5652074 TPASS_0575 TPASS_0576 ptsI prfB FALSE 0.241 64.000 0.000 NA   NA
 5652074 5652075 TPASS_0576 TPASS_0577 prfB   FALSE 0.393 -108.000 0.000 NA   NA
 5652075 5652076 TPASS_0577 TPASS_0578   ftsY TRUE 0.965 7.000 0.002 NA   NA
 5652076 5652077 TPASS_0578 TPASS_0579 ftsY   TRUE 0.838 -3.000 0.000 NA   NA
 5652077 5652078 TPASS_0579 TPASS_0580     TRUE 0.749 -7.000 0.000 NA   NA
 5652078 5652079 TPASS_0580 TPASS_0581     TRUE 0.985 -7.000 0.471 1.000 N NA
 5652079 5652080 TPASS_0581 TPASS_0582     TRUE 0.992 -3.000 0.444 1.000 N NA
 5652082 5652083 TPASS_0584 TPASS_0585   oppA TRUE 0.991 -7.000 0.600 NA   NA
 5652083 5652084 TPASS_0585 TPASS_0586 oppA leuS FALSE 0.069 89.000 0.000 1.000 N NA
 5652085 5652086 TPASS_0587 TPASS_0588     TRUE 0.859 27.000 0.000 0.009   NA
 5652086 5652087 TPASS_0588 TPASS_0589   ptsH FALSE 0.070 88.000 0.000 1.000 N NA
 5652087 5652088 TPASS_0589 TPASS_0590 ptsH   TRUE 0.553 -28.000 0.000 NA   NA
 5652088 5652089 TPASS_0590 TPASS_0591   ptsK FALSE 0.465 -43.000 0.000 NA   NA
 5652091 5652092 TPASS_t0027 TPASS_t0028     FALSE 0.272 52.000 0.000 NA   NA
 5652092 5652093 TPASS_t0028 TPASS_t0029     FALSE 0.240 70.000 0.000 NA   NA
 5652094 5652095 TPASS_0592 TPASS_0593     FALSE 0.427 -63.000 0.000 NA   NA
 5652096 5652097 TPASS_0594 TPASS_0595   adk TRUE 0.582 28.000 0.000 NA   NA
 5652097 5652098 TPASS_0595 TPASS_0596 adk pcnB FALSE 0.317 24.000 0.000 1.000 N NA
 5652098 5652099 TPASS_0596 TPASS_0598 pcnB   FALSE 0.225 108.000 0.000 NA   NA
 5652099 5652100 TPASS_0598 TPASS_0599     FALSE 0.387 37.000 0.000 NA   NA
 5652100 5652101 TPASS_0599 TPASS_0600     TRUE 0.878 7.000 0.000 NA   NA
 5652101 5652102 TPASS_0600 TPASS_0601   dxr TRUE 0.992 -3.000 0.568 1.000 N NA
 5652102 5652103 TPASS_0601 TPASS_0602 dxr cdsA TRUE 0.954 -24.000 0.016 1.000 Y NA
 5652103 5652104 TPASS_0602 TPASS_0603 cdsA   TRUE 0.991 -3.000 0.027 1.000 Y NA
 5652104 5652105 TPASS_0603 TPASS_0604     TRUE 0.994 6.000 0.409 1.000 N NA
 5652105 5652106 TPASS_0604 TPASS_0605   tsf TRUE 0.849 104.000 0.021 1.000 Y NA
 5652106 5652107 TPASS_0605 TPASS_0606 tsf rpsB TRUE 0.955 91.000 0.748 1.000 Y NA
 5652107 5652108 TPASS_0606 TPASS_0607 rpsB   TRUE 0.522 -31.000 0.000 NA   NA
 5652111 5652112 TPASS_0609 TPASS_0610 asnS tprH TRUE 0.819 10.000 0.000 1.000   NA
 5652112 5652113 TPASS_0610 TPASS_0611 tprH   FALSE 0.155 142.000 0.000 1.000   NA
 5652113 5652114 TPASS_0611 TPASS_0612     TRUE 0.958 81.000 0.466 1.000 Y NA
 5652114 5652115 TPASS_0612 TPASS_0613     TRUE 0.997 27.000 0.266 0.003 Y NA
 5652115 5652116 TPASS_0613 TPASS_0614   nifS1 TRUE 0.980 -3.000 0.077 1.000 N NA
 5652116 5652117 TPASS_0614 TPASS_0615 nifS1 nifU TRUE 0.881 51.000 0.292 1.000 N NA
 5652117 5652118 TPASS_0615 TPASS_0616 nifU rpiA FALSE 0.400 21.000 0.000 1.000 N NA
 5652119 5652120 TPASS_0617 TPASS_0618     FALSE 0.232 96.000 0.000 NA   NA
 5652120 5652121 TPASS_0618 TPASS_0619     FALSE 0.261 56.000 0.000 NA   NA
 5652121 5652122 TPASS_0619 TPASS_0620   tprI TRUE 0.838 -3.000 0.000 NA   NA
 5652122 5652123 TPASS_0620 TPASS_0621 tprI tprJ TRUE 0.528 58.000 0.000 0.022   NA
 5652123 5652124 TPASS_0621 TPASS_0622 tprJ   FALSE 0.184 60.000 0.000 1.000   NA
 5652125 5652126 TPASS_0623 TPASS_0624 dniR   TRUE 0.834 4.000 0.000 1.000   NA
 5652126 5652127 TPASS_0624 TPASS_0625     TRUE 0.826 0.000 0.000 1.000   NA
 5652127 5652128 TPASS_0625 TPASS_0626     TRUE 0.778 -3.000 0.000 1.000   NA
 5652128 5652129 TPASS_0626 TPASS_0627   sbcC TRUE 0.997 -3.000 0.021 0.003 Y NA
 5652129 5652130 TPASS_0627 TPASS_0628 sbcC   TRUE 0.558 -3.000 0.000 1.000 N NA
 5652130 5652131 TPASS_0628 TPASS_0629     FALSE 0.208 171.000 0.000 NA   NA
 5652131 5652132 TPASS_0629 TPASS_0630   cheR FALSE 0.208 170.000 0.000 NA   NA
 5652132 5652133 TPASS_0630 TPASS_0631 cheR cheB TRUE 0.938 47.000 0.113 1.000 Y NA
 5652133 5652134 TPASS_0631 TPASS_0632 cheB trpS FALSE 0.354 105.000 0.000 0.046 N NA
 5652134 5652135 TPASS_0632 TPASS_0633 trpS msrA FALSE 0.062 141.000 0.000 1.000 N NA
 5652135 5652136 TPASS_0633 TPASS_0634 msrA lig FALSE 0.065 119.000 0.000 1.000 N NA
 5652137 5652138 TPASS_0636 TPASS_0637   miaA FALSE 0.126 38.000 0.000 1.000 N NA
 5652138 5652139 TPASS_0637 TPASS_0638 miaA   FALSE 0.203 224.000 0.000 NA   NA
 5652139 5652140 TPASS_0638 TPASS_t0031     FALSE 0.239 81.000 0.000 NA   NA
 5652140 5652141 TPASS_t0031 TPASS_t0032     TRUE 0.816 15.000 0.000 NA   NA
 5652142 5652143 TPASS_t0033 TPASS_0639   mcp3 TRUE 0.541 -29.000 0.000 NA   NA
 5652143 5652144 TPASS_0639 TPASS_0640 mcp3 mcp4 TRUE 0.954 24.000 0.000 0.008 Y NA
 5652146 5652147 TPASS_0642 TPASS_0643 manB dnaQ TRUE 0.991 -3.000 0.700 1.000 N NA
 5652148 5652149 TPASS_0644 TPASS_0645 lysS1   TRUE 0.489 31.000 0.000 NA   NA
 5652149 5652150 TPASS_0645 TPASS_0646     FALSE 0.252 59.000 0.000 NA   NA
 5652150 5652151 TPASS_0646 TPASS_0647   serS FALSE 0.406 -88.000 0.000 NA   NA
 5652151 5652152 TPASS_0647 TPASS_0648 serS   FALSE 0.088 50.000 0.000 1.000 N NA
 5652152 5652153 TPASS_0648 TPASS_0649   tlyC TRUE 0.883 -55.000 0.022 NA   NA
 5652153 5652154 TPASS_0649 TPASS_0650 tlyC   TRUE 0.984 -12.000 0.222 NA   NA
 5652154 5652155 TPASS_0650 TPASS_0651     TRUE 0.994 6.000 0.182 NA   NA
 5652156 5652157 TPASS_0652 TPASS_0653 potA potB TRUE 0.995 -3.000 0.156 1.000 Y NA
 5652157 5652158 TPASS_0653 TPASS_0654 potB potC TRUE 0.998 -7.000 0.944 0.022 Y NA
 5652158 5652159 TPASS_0654 TPASS_0655 potC potD TRUE 0.859 36.000 0.000 0.022 Y NA
 5652159 5652160 TPASS_0655 TPASS_0656 potD   TRUE 0.522 -31.000 0.000 NA   NA
 5652161 5652162 TPASS_0657 TPASS_0658 csrA   TRUE 0.980 -6.000 0.071 NA   NA
 5652162 5652163 TPASS_0658 TPASS_0659   flgL TRUE 0.991 19.000 0.385 NA   NA
 5652163 5652164 TPASS_0659 TPASS_0660 flgL flgK TRUE 0.991 34.000 0.186 0.003 Y NA
 5652164 5652165 TPASS_0660 TPASS_0661 flgK   TRUE 0.879 106.000 0.214 NA   NA
 5652165 5652166 TPASS_0661 TPASS_0662   cbbA FALSE 0.219 123.000 0.000 NA   NA
 5652167 5652168 TPASS_0663 TPASS_0664   flaA2 TRUE 0.998 -3.000 0.348 0.011   NA
 5652169 5652170 TPASS_0665 TPASS_0666     TRUE 0.991 -3.000 0.158 NA   NA
 5652170 5652171 TPASS_0666 TPASS_0667   udk FALSE 0.315 44.000 0.000 NA   NA
 5652173 5652174 TPASS_0668 TPASS_0669   dnaE TRUE 0.778 -3.000 0.000 1.000   NA
 5652176 5652177 TPASS_0670 TPASS_0671 ddlA   TRUE 0.640 2.000 0.000 1.000 N NA
 5652177 5652178 TPASS_0671 TPASS_0672   glyS TRUE 0.686 31.000 0.004 1.000 N NA
 5652178 5652179 TPASS_0672 TPASS_0673 glyS gltX TRUE 0.850 135.000 0.025 1.000 Y NA
 5652180 5652181 TPASS_0674 TPASS_0675     TRUE 0.879 6.000 0.000 NA   NA
 5652182 5652183 TPASS_0676 TPASS_0677     TRUE 0.707 22.000 0.000 NA   NA
 5652184 5652185 TPASS_t0036 TPASS_0678     FALSE 0.233 93.000 0.000 NA   NA
 5652185 5652186 TPASS_0678 TPASS_0679     TRUE 0.838 -3.000 0.000 NA   NA
 5652187 5652188 TPASS_0680 TPASS_0681 gcp alr FALSE 0.085 51.000 0.000 1.000 N NA
 5652188 5652189 TPASS_0681 TPASS_0682 alr ftsJ FALSE 0.367 29.000 0.000 NA N NA
 5652190 5652191 TPASS_0683 TPASS_0684   mglB2 FALSE 0.109 293.000 0.000 NA N NA
 5652191 5652192 TPASS_0684 TPASS_0685 mglB2 mglA TRUE 0.908 120.000 0.069 NA Y NA
 5652192 5652193 TPASS_0685 TPASS_0686 mglA mglC TRUE 0.996 15.000 0.905 1.000 Y NA
 5652194 5652195 TPASS_0687 TPASS_0688 recG mccF FALSE 0.146 56.000 0.000 NA N NA
 5652195 5652196 TPASS_0688 TPASS_0689 mccF   TRUE 0.878 1.000 0.000 NA   NA
 5652196 5652197 TPASS_0689 TPASS_0690     FALSE 0.403 36.000 0.000 NA   NA
 5652197 5652198 TPASS_0690 TPASS_0691     TRUE 0.749 -7.000 0.000 NA   NA
 5652198 5652199 TPASS_0691 TPASS_0692   recA TRUE 0.850 28.000 0.003 NA   NA
 5652199 5652200 TPASS_0692 TPASS_t0037 recA   FALSE 0.240 69.000 0.000 NA   NA
 5652200 5652201 TPASS_t0037 TPASS_0693     FALSE 0.221 119.000 0.000 NA   NA
 5652202 5652203 TPASS_0694 TPASS_0695     FALSE 0.070 88.000 0.000 1.000 N NA
 5652204 5652205 TPASS_0696 TPASS_0697     FALSE 0.243 62.000 0.000 NA   NA
 5652205 5652206 TPASS_0697 TPASS_0698     TRUE 0.489 31.000 0.000 NA   NA
 5652206 5652207 TPASS_0698 TPASS_0699     TRUE 0.838 -3.000 0.000 NA   NA
 5652207 5652208 TPASS_0699 TPASS_0700     TRUE 0.879 6.000 0.000 NA   NA
 5652208 5652209 TPASS_0700 TPASS_0701     FALSE 0.215 138.000 0.000 NA   NA
 5652211 5652212 TPASS_0702 TPASS_0703     TRUE 0.816 15.000 0.000 NA   NA
 5652212 5652213 TPASS_0703 TPASS_0704   recJ TRUE 0.875 0.000 0.000 NA   NA
 5652213 5652214 TPASS_0704 TPASS_0705 recJ pbp2 FALSE 0.062 143.000 0.000 1.000 N NA
 5652214 5652215 TPASS_0705 TPASS_0706 pbp2   FALSE 0.429 297.000 0.000 1.000 Y NA
 5652215 5652216 TPASS_0706 TPASS_0707     FALSE 0.243 62.000 0.000 NA   NA
 5652217 5652218 TPASS_0708 TPASS_0709     FALSE 0.261 56.000 0.000 NA   NA
 5652218 5652219 TPASS_0709 TPASS_0710     TRUE 0.985 9.000 0.050 NA N NA
 5652219 5652220 TPASS_0710 TPASS_0711     FALSE 0.387 37.000 0.000 NA   NA
 5652221 5652222 TPASS_0712 TPASS_0713 ylxH1 flhF TRUE 0.985 -28.000 0.382 0.026 N NA
 5652222 5652223 TPASS_0713 TPASS_0714 flhF flhA TRUE 0.981 35.000 0.440 1.000 Y NA
 5652223 5652224 TPASS_0714 TPASS_0715 flhA flhB TRUE 0.999 9.000 0.207 0.009 Y NA
 5652224 5652225 TPASS_0715 TPASS_0716 flhB fliR TRUE 0.996 -3.000 0.218 1.000 Y NA
 5652225 5652226 TPASS_0716 TPASS_0717 fliR fliQ TRUE 0.999 13.000 0.276 0.006 Y NA
 5652226 5652227 TPASS_0717 TPASS_0718 fliQ fliP TRUE 0.997 19.000 0.101 0.009 Y NA
 5652227 5652228 TPASS_0718 TPASS_0719 fliP   TRUE 0.778 -3.000 0.000 1.000   NA
 5652228 5652229 TPASS_0719 TPASS_0720   fliY FALSE 0.330 -64.000 0.000 1.000   NA
 5652229 5652230 TPASS_0720 TPASS_0721 fliY fliM TRUE 0.997 -7.000 0.142 0.004 Y NA
 5652230 5652231 TPASS_0721 TPASS_0722 fliM fliL TRUE 0.995 22.000 0.067 0.004 Y NA
 5652231 5652232 TPASS_0722 TPASS_0723 fliL   TRUE 0.599 -21.000 0.000 NA   NA
 5652232 5652233 TPASS_0723 TPASS_0724   motB TRUE 0.838 -3.000 0.000 NA   NA
 5652233 5652234 TPASS_0724 TPASS_0725 motB motA TRUE 0.998 6.000 0.383 1.000 Y NA
 5652234 5652235 TPASS_0725 TPASS_0726 motA flbD TRUE 0.997 16.000 0.301 NA Y NA
 5652235 5652236 TPASS_0726 TPASS_0727 flbD flgE TRUE 0.967 58.000 0.545 NA Y NA
 5652236 5652237 TPASS_0727 TPASS_0728 flgE flgD TRUE 0.959 71.000 0.298 NA Y NA
 5652237 5652238 TPASS_0728 TPASS_0729 flgD tap1 FALSE 0.242 76.000 0.000 NA   NA
 5652239 5652240 TPASS_0730 TPASS_0731     FALSE 0.405 20.000 0.000 1.000 N NA
 5652243 5652244 TPASS_0734 TPASS_0735 deoD gltA FALSE 0.071 82.000 0.000 1.000 N NA
 5652244 5652245 TPASS_0735 TPASS_0736 gltA hydG TRUE 0.997 3.000 0.278 0.014 N NA
 5652247 5652248 TPASS_0738 TPASS_0739     TRUE 0.974 -3.000 0.014 NA   NA
 5652248 5652249 TPASS_0739 TPASS_0740     TRUE 0.694 74.000 0.024 NA N NA
 5652249 5652250 TPASS_0740 TPASS_0741     FALSE 0.454 128.000 0.000 1.000 Y NA
 5652250 5652251 TPASS_0741 TPASS_0742   obg TRUE 0.778 -3.000 0.000 1.000   NA
 5652251 5652252 TPASS_0742 TPASS_0743 obg rpmA TRUE 0.890 118.000 0.335 1.000   NA
 5652252 5652253 TPASS_0743 TPASS_0744 rpmA   TRUE 0.982 31.000 0.203 NA Y NA
 5652253 5652254 TPASS_0744 TPASS_0745   rplU TRUE 0.997 13.000 0.208 NA Y NA
 5652254 5652255 TPASS_0745 TPASS_0746 rplU   FALSE 0.066 107.000 0.000 1.000 N NA
 5652255 5652256 TPASS_0746 TPASS_0747     TRUE 0.996 10.000 0.800 NA   NA
 5652256 5652257 TPASS_0747 TPASS_0748   cfpA TRUE 0.913 89.000 0.800 NA   NA
 5652257 5652258 TPASS_0748 TPASS_0749 cfpA   TRUE 0.580 -22.000 0.000 NA   NA
 5652259 5652260 TPASS_0750 TPASS_0751     TRUE 0.951 37.000 0.286 NA   NA
 5652261 5652262 TPASS_0752 TPASS_0753     TRUE 0.920 81.000 0.571 NA   NA
 5652262 5652263 TPASS_0753 TPASS_0754     TRUE 0.959 -3.000 0.004 NA   NA
 5652263 5652264 TPASS_0754 TPASS_0755   ptsN2 FALSE 0.106 42.000 0.000 1.000 N NA
 5652264 5652265 TPASS_0755 TPASS_0756 ptsN2 fmt FALSE 0.059 200.000 0.000 1.000 N NA
 5652265 5652266 TPASS_0756 TPASS_0757 fmt def TRUE 0.997 4.000 0.026 0.063 Y NA
 5652266 5652267 TPASS_0757 TPASS_0758 def rpsU TRUE 0.562 41.000 0.000 0.063   NA
 5652268 5652269 TPASS_0759 TPASS_0760   pbp3 FALSE 0.465 -43.000 0.000 NA   NA
 5652269 5652270 TPASS_0760 TPASS_0761 pbp3   TRUE 0.619 -19.000 0.000 NA   NA
 5652270 5652271 TPASS_0761 TPASS_0762     TRUE 0.544 29.000 0.000 NA   NA
 5652275 5652276 TPASS_0766 TPASS_0767   fusA2 FALSE 0.204 211.000 0.000 NA   NA
 5652276 5652277 TPASS_0767 TPASS_0768 fusA2 tmpA FALSE 0.214 139.000 0.000 NA   NA
 5652277 5652278 TPASS_0768 TPASS_0769 tmpA tmpB TRUE 0.993 -3.000 0.250 NA   NA
 5652278 5652279 TPASS_0769 TPASS_0770 tmpB   FALSE 0.312 45.000 0.000 NA   NA
 5652282 5652283 TPASS_0773 TPASS_t0039 htrA1   TRUE 0.840 13.000 0.000 NA   NA
 5652284 5652285 TPASS_t0040 TPASS_0774   mgtC FALSE 0.443 33.000 0.000 NA   NA
 5652285 5652286 TPASS_0774 TPASS_0775 mgtC nth FALSE 0.176 80.000 0.000 1.000   NA
 5652287 5652288 TPASS_0776 TPASS_0777     FALSE 0.269 53.000 0.000 NA   NA
 5652288 5652289 TPASS_0777 TPASS_0778   mazG FALSE 0.240 69.000 0.000 NA   NA
 5652289 5652290 TPASS_0778 TPASS_0779 mazG dedA TRUE 0.838 -3.000 0.000 NA   NA
 5652290 5652291 TPASS_0779 TPASS_0780 dedA nadE TRUE 0.717 47.000 0.009 NA   NA
 5652291 5652292 TPASS_0780 TPASS_0781 nadE   FALSE 0.387 37.000 0.000 NA   NA
 5652292 5652293 TPASS_0781 TPASS_0782     FALSE 0.305 46.000 0.000 NA   NA
 5652293 5652294 TPASS_0782 TPASS_0783     TRUE 0.544 29.000 0.000 NA   NA
 5652295 5652296 TPASS_0784 TPASS_0785     TRUE 0.974 -3.000 0.013 NA   NA
 5652296 5652297 TPASS_0785 TPASS_0786     TRUE 0.910 132.000 0.543 NA   NA
 5652300 5652301 TPASS_0789 TPASS_0790     TRUE 0.991 19.000 0.500 NA   NA
 5652301 5652302 TPASS_0790 TPASS_0791     FALSE 0.213 143.000 0.000 NA   NA
 5652303 5652304 TPASS_0792 TPASS_0793 flaB2   FALSE 0.241 79.000 0.000 NA   NA
 5652307 5652308 TPASS_0796 TPASS_0797   proC FALSE 0.075 60.000 0.000 1.000 N NA
 5652308 5652309 TPASS_0797 TPASS_0798 proC metG FALSE 0.085 51.000 0.000 1.000 N NA
 5652310 5652311 TPASS_0799 TPASS_0800   dacC FALSE 0.213 143.000 0.000 NA   NA
 5652313 5652314 TPASS_0802 TPASS_0803     TRUE 0.827 14.000 0.000 NA   NA
 5652314 5652315 TPASS_0803 TPASS_0804   ugpC FALSE 0.178 78.000 0.000 1.000   NA
 5652316 5652317 TPASS_0805 TPASS_0806 rnb   TRUE 0.558 -3.000 0.000 1.000 N NA
 5652318 5652319 TPASS_0807 TPASS_0808 rpmF acpP TRUE 0.607 61.000 0.017 1.000 N NA
 5652319 5652320 TPASS_0808 TPASS_0809 acpP rnc TRUE 0.963 -3.000 0.019 1.000 N NA
 5652320 5652321 TPASS_0809 TPASS_0810 rnc dam FALSE 0.189 31.000 0.000 1.000 N NA
 5652325 5652326 TPASS_0814 TPASS_0815 trxB   FALSE 0.160 122.000 0.000 1.000   NA
 5652327 5652328 TPASS_0816 TPASS_0817   eno FALSE 0.215 138.000 0.000 NA   NA
 5652328 5652329 TPASS_0817 TPASS_0818 eno   TRUE 0.838 -3.000 0.000 NA   NA
 5652329 5652330 TPASS_0818 TPASS_0819     TRUE 0.605 27.000 0.000 NA   NA
 5652330 5652331 TPASS_0819 TPASS_0820     TRUE 0.486 28.000 0.000 1.000   NA
 5652331 5652332 TPASS_0820 TPASS_0821   tpn32 FALSE 0.232 96.000 0.000 NA   NA
 5652332 5652333 TPASS_0821 TPASS_0822 tpn32   FALSE 0.132 81.000 0.000 NA N NA
 5652333 5652334 TPASS_0822 TPASS_0823   rbo FALSE 0.070 88.000 0.000 1.000 N NA
 5652335 5652336 TPASS_0824 TPASS_0825 dxs   TRUE 0.838 -3.000 0.000 NA   NA
 5652336 5652337 TPASS_0825 TPASS_0826     TRUE 0.694 -13.000 0.000 NA   NA
 5652337 5652338 TPASS_0826 TPASS_0827     TRUE 0.953 -337.000 0.502 NA   NA
 5652338 5652339 TPASS_0827 TPASS_0828   acpS TRUE 0.981 -3.000 0.025 NA   NA
 5652339 5652340 TPASS_0828 TPASS_0829 acpS   TRUE 0.987 -3.000 0.076 NA   NA
 5652340 5652341 TPASS_0829 TPASS_0830   hisT TRUE 0.973 -3.000 0.013 NA   NA
 5652342 5652343 TPASS_0831 TPASS_0832 argS   TRUE 0.676 23.000 0.000 NA   NA
 5652345 5652346 TPASS_0834 TPASS_0835 tyrS   FALSE 0.236 87.000 0.000 NA   NA
 5652346 5652347 TPASS_0835 TPASS_0836     FALSE 0.214 141.000 0.000 NA   NA
 5652349 5652350 TPASS_0838 TPASS_0839     FALSE 0.242 75.000 0.000 NA   NA
 5652352 5652353 TPASS_0841 TPASS_0842 htrA2 map TRUE 0.821 312.000 0.037 0.028 N NA
 5652353 5652354 TPASS_0842 TPASS_0843 map   FALSE 0.064 124.000 0.000 1.000 N NA
 5652356 5652357 TPASS_0845 TPASS_0846     TRUE 0.905 -19.000 0.008 NA   NA
 5652357 5652358 TPASS_0846 TPASS_0847     TRUE 0.975 0.000 0.007 NA   NA
 5652358 5652359 TPASS_0847 TPASS_0848   rplT TRUE 0.939 -6.000 0.004 NA   NA
 5652359 5652360 TPASS_0848 TPASS_0849 rplT rpmI TRUE 0.991 33.000 0.928 0.038 Y NA
 5652360 5652361 TPASS_0849 TPASS_0850 rpmI infC TRUE 0.964 53.000 0.652 1.000 Y NA
 5652363 5652364 TPASS_0852 TPASS_0853 lgt ylxH2 TRUE 0.586 151.000 0.021 1.000 N NA
 5652364 5652365 TPASS_0853 TPASS_0854 ylxH2   FALSE 0.081 55.000 0.000 1.000 N NA
 5652365 5652366 TPASS_0854 TPASS_0855     TRUE 0.994 -3.000 0.875 NA   NA
 5652369 5652370 TPASS_0858 TPASS_0859     FALSE 0.238 82.000 0.000 NA   NA
 5652370 5652371 TPASS_0859 TPASS_0860     FALSE 0.240 65.000 0.000 NA   NA
 5652372 5652373 TPASS_0861 TPASS_0862 glmS fklB FALSE 0.058 237.000 0.000 1.000 N NA
 5652375 5652376 TPASS_0864 TPASS_0865     FALSE 0.427 34.000 0.000 NA   NA
 5652376 5652377 TPASS_0865 TPASS_0866     FALSE 0.235 88.000 0.000 NA   NA
 5652377 5652378 TPASS_0866 TPASS_0867     TRUE 0.496 -34.000 0.000 NA   NA
 5652379 5652380 TPASS_0868 TPASS_0869 flaB1   FALSE 0.199 512.000 0.000 NA   NA
 5652380 5652381 TPASS_0869 TPASS_0870   flaB3 TRUE 0.582 28.000 0.000 NA   NA
 5652383 5652384 TPASS_0872 TPASS_0873 fliD   TRUE 0.987 12.000 0.056 NA   NA
 5652384 5652385 TPASS_0873 TPASS_0874     TRUE 0.989 -3.000 0.095 NA   NA
 5652385 5652386 TPASS_0874 TPASS_0875     TRUE 0.824 40.000 0.019 NA   NA
 5652386 5652387 TPASS_0875 TPASS_0876     TRUE 0.913 47.000 0.217 NA   NA
 5652387 5652388 TPASS_0876 TPASS_0877     TRUE 0.943 5.000 0.003 1.000 N NA
 5652389 5652390 TPASS_0878 TPASS_0879     TRUE 0.989 6.000 0.048 NA   NA
 5652390 5652391 TPASS_0879 TPASS_0880     TRUE 0.838 -3.000 0.000 NA   NA
 5652391 5652392 TPASS_0880 TPASS_0881   natA TRUE 0.715 -10.000 0.000 NA   NA
 5652392 5652393 TPASS_0881 TPASS_0882 natA   TRUE 0.487 79.000 0.000 1.000 Y NA
 5652393 5652394 TPASS_0882 TPASS_0883     FALSE 0.400 -34.000 0.000 1.000   NA
 5652394 5652395 TPASS_0883 TPASS_0884     TRUE 0.996 18.000 0.631 0.040   NA
 5652395 5652396 TPASS_0884 TPASS_0885   dut TRUE 0.833 30.000 0.008 1.000   NA
 5652396 5652397 TPASS_0885 TPASS_0886 dut pnp TRUE 0.971 -3.000 0.031 1.000 N NA
 5652397 5652398 TPASS_0886 TPASS_0887 pnp rpsO TRUE 0.948 148.000 0.335 1.000 Y NA
 5652398 5652399 TPASS_0887 TPASS_0888 rpsO ribF TRUE 0.488 16.000 0.000 1.000 N NA
 5652399 5652400 TPASS_0888 TPASS_0889 ribF truB TRUE 0.644 4.000 0.000 1.000 N NA
 5652400 5652401 TPASS_0889 TPASS_0890 truB rbfA TRUE 0.980 -22.000 0.111 1.000 Y NA
 5652401 5652402 TPASS_0890 TPASS_0891 rbfA infB TRUE 0.997 -3.000 0.530 1.000 Y NA
 5652402 5652403 TPASS_0891 TPASS_0892 infB nusA TRUE 0.847 176.000 0.342 1.000 N NA
 5652403 5652404 TPASS_0892 TPASS_0893 nusA   TRUE 0.933 50.000 0.759 NA   NA
 5652404 5652405 TPASS_0893 TPASS_0894     FALSE 0.207 175.000 0.000 NA   NA
 5652405 5652406 TPASS_0894 TPASS_0895     TRUE 0.878 7.000 0.000 NA   NA
 5652406 5652407 TPASS_0895 TPASS_0896     TRUE 0.707 22.000 0.000 NA   NA
 5652407 5652408 TPASS_0896 TPASS_0897   tprK TRUE 0.638 -18.000 0.000 NA   NA
 5652408 5652409 TPASS_0897 TPASS_0898 tprK   TRUE 0.778 -3.000 0.000 1.000   NA
 5652409 5652410 TPASS_0898 TPASS_0899     TRUE 0.951 -3.000 0.000 NA Y NA
 5652410 5652411 TPASS_0899 TPASS_0900     TRUE 0.599 -21.000 0.000 NA   NA
 5652411 5652412 TPASS_0900 TPASS_0901     FALSE 0.364 39.000 0.000 NA   NA
 5652412 5652413 TPASS_0901 TPASS_0902   est FALSE 0.257 41.000 0.000 1.000   NA
 5652414 5652415 TPASS_0903 TPASS_0904 murD   TRUE 0.749 -7.000 0.000 NA   NA
 5652415 5652416 TPASS_0904 TPASS_0905   rpsP TRUE 0.479 -37.000 0.000 NA   NA
 5652416 5652417 TPASS_0905 TPASS_0906 rpsP   TRUE 0.995 9.000 0.385 1.000   NA
 5652417 5652418 TPASS_0906 TPASS_0907     TRUE 0.899 63.000 0.324 1.000   NA
 5652418 5652419 TPASS_0907 TPASS_0908   trmD TRUE 0.997 -3.000 0.672 1.000 Y NA
 5652419 5652420 TPASS_0908 TPASS_0909 trmD rplS TRUE 0.989 -28.000 0.567 1.000 Y NA
 5652420 5652421 TPASS_0909 TPASS_0910 rplS   TRUE 0.838 -3.000 0.000 NA   NA
 5652421 5652422 TPASS_0910 TPASS_0911     TRUE 0.707 22.000 0.000 NA   NA
 5652422 5652423 TPASS_0911 TPASS_0912     TRUE 0.985 13.000 0.071 1.000   NA
 5652423 5652424 TPASS_0912 TPASS_0913     TRUE 0.876 -16.000 0.010 1.000 N NA
 5652424 5652425 TPASS_0913 TPASS_0914     TRUE 0.528 172.000 0.004 NA   NA
 5652425 5652426 TPASS_0914 TPASS_0915     FALSE 0.242 74.000 0.000 NA   NA
 5652426 5652427 TPASS_0915 TPASS_0916     FALSE 0.257 57.000 0.000 NA   NA
 5652427 5652428 TPASS_0916 TPASS_0917   mgtE TRUE 0.661 -16.000 0.000 NA   NA
 5652428 5652429 TPASS_0917 TPASS_0918 mgtE   TRUE 0.980 15.000 0.071 NA N NA
 5652431 5652432 TPASS_0920 TPASS_0921     FALSE 0.165 108.000 0.000 1.000   NA
 5652433 5652434 TPASS_0922 TPASS_0923     FALSE 0.364 39.000 0.000 NA   NA
 5652435 5652436 TPASS_t0041 TPASS_0924   tex FALSE 0.230 100.000 0.000 NA   NA
 5652440 5652441 TPASS_0927 TPASS_0928     FALSE 0.232 95.000 0.000 NA   NA
 5652441 5652442 TPASS_0928 TPASS_0929     TRUE 0.854 12.000 0.000 NA   NA
 5652442 5652443 TPASS_0929 TPASS_0930     TRUE 0.655 24.000 0.000 NA   NA
 5652444 5652445 TPASS_0931 TPASS_0932     TRUE 0.869 10.000 0.000 NA   NA
 5652445 5652446 TPASS_0932 TPASS_0933   murE TRUE 0.869 10.000 0.000 NA   NA
 5652450 5652451 TPASS_0936 TPASS_0937     FALSE 0.208 172.000 0.000 NA   NA
 5652451 5652452 TPASS_0937 TPASS_0938     TRUE 0.838 -3.000 0.000 NA   NA
 5652452 5652453 TPASS_0938 TPASS_0939     FALSE 0.240 65.000 0.000 NA   NA
 5652453 5652454 TPASS_0939 TPASS_0940     TRUE 0.797 16.000 0.000 NA   NA
 5652454 5652455 TPASS_0940 TPASS_0941     FALSE 0.364 39.000 0.000 NA   NA
 5652455 5652456 TPASS_0941 TPASS_0942     FALSE 0.242 77.000 0.000 NA   NA
 5652456 5652457 TPASS_0942 TPASS_0943   fliS TRUE 0.998 6.000 0.200 0.005   NA
 5652457 5652458 TPASS_0943 TPASS_0944 fliS   FALSE 0.214 49.000 0.000 1.000   NA
 5652458 5652459 TPASS_0944 TPASS_0945   cfxE FALSE 0.151 171.000 0.000 1.000   NA
 5652461 5652462 TPASS_0947 TPASS_0948 cyp jag TRUE 0.778 -3.000 0.000 1.000   NA
 5652462 5652463 TPASS_0948 TPASS_0949 jag   TRUE 0.990 16.000 0.254 1.000   NA
 5652463 5652464 TPASS_0949 TPASS_0950     FALSE 0.201 276.000 0.000 NA   NA
 5652464 5652465 TPASS_0950 TPASS_0951   rpmH TRUE 0.881 4.000 0.000 NA   NA
 5652465 5652466 TPASS_0951 TPASS_0952 rpmH   FALSE 0.161 120.000 0.000 1.000   NA
 5652466 5652467 TPASS_0952 TPASS_0953   traB FALSE 0.238 82.000 0.000 NA   NA
 5652467 5652468 TPASS_0953 TPASS_0954 traB   TRUE 0.704 87.000 0.016 NA   NA
 5652468 5652469 TPASS_0954 TPASS_0955     FALSE 0.241 72.000 0.000 NA   NA
 5652470 5652471 TPASS_0956 TPASS_0957   tp33 TRUE 0.915 91.000 0.385 NA   NA
 5652471 5652472 TPASS_0957 TPASS_0958 tp33 dctM TRUE 0.980 32.000 0.205 NA Y NA
 5652473 5652474 TPASS_0959 TPASS_0960   flgG1 TRUE 0.995 12.000 0.049 NA Y NA
 5652474 5652475 TPASS_0960 TPASS_0961 flgG1 flgG2 TRUE 0.979 76.000 0.180 0.003 Y NA
 5652475 5652476 TPASS_0961 TPASS_0962 flgG2   FALSE 0.070 86.000 0.000 1.000 N NA
 5652476 5652477 TPASS_0962 TPASS_0963     TRUE 0.679 111.000 0.000 0.059 Y NA
 5652477 5652478 TPASS_0963 TPASS_0964     TRUE 0.994 -10.000 0.667 1.000 Y NA
 5652478 5652479 TPASS_0964 TPASS_0965     TRUE 0.986 0.000 0.087 1.000 N NA
 5652479 5652480 TPASS_0965 TPASS_0966     TRUE 0.633 25.000 0.000 NA   NA
 5652480 5652481 TPASS_0966 TPASS_0967     FALSE 0.295 47.000 0.000 NA   NA
 5652481 5652482 TPASS_0967 TPASS_0968     TRUE 0.838 -3.000 0.000 NA   NA
 5652482 5652483 TPASS_0968 TPASS_0969     TRUE 0.838 -3.000 0.000 NA   NA
 5652483 5652484 TPASS_0969 TPASS_0970     TRUE 0.838 -3.000 0.000 NA   NA
 5652484 5652485 TPASS_0970 TPASS_0971   tpd TRUE 0.707 22.000 0.000 NA   NA
 5652485 5652486 TPASS_0971 TPASS_0972 tpd   TRUE 0.946 156.000 0.238 NA Y NA
 5652488 5652489 TPASS_0974 TPASS_0975     TRUE 0.650 52.000 0.005 NA   NA
 5652490 5652491 TPASS_0976 TPASS_0977     TRUE 0.694 -13.000 0.000 NA   NA
 5652491 5652492 TPASS_0977 TPASS_0978   lsp TRUE 0.985 -3.000 0.050 NA   NA
 5652492 5652493 TPASS_0978 TPASS_0979 lsp   FALSE 0.113 170.000 0.000 NA N NA
 5652493 5652494 TPASS_0979 TPASS_0980   ntrB TRUE 0.962 8.000 0.005 NA N NA
 5652494 5652495 TPASS_0980 TPASS_0981 ntrB   FALSE 0.411 60.000 0.002 1.000 N NA
 5652495 5652496 TPASS_0981 TPASS_0982     TRUE 0.991 16.000 0.312 1.000   NA
 5652496 5652497 TPASS_0982 TPASS_0983     TRUE 0.989 -10.000 0.500 NA   NA
 5652499 5652500 TPASS_0985 TPASS_0986 aspS   FALSE 0.079 56.000 0.000 1.000 N NA
 5652504 5652505 TPASS_0990 TPASS_0991     FALSE 0.177 64.000 0.000 1.000   NA
 5652505 5652506 TPASS_0991 TPASS_0992     FALSE 0.443 33.000 0.000 NA   NA
 5652507 5652508 TPASS_0993 TPASS_t0044     FALSE 0.222 118.000 0.000 NA   NA
 5652509 5652510 TPASS_0994 TPASS_0995     FALSE 0.242 76.000 0.000 NA   NA
 5652511 5652512 TPASS_0996 TPASS_t0045     TRUE 0.655 24.000 0.000 NA   NA
 5652512 5652513 TPASS_t0045 TPASS_0997   sppA FALSE 0.249 60.000 0.000 NA   NA
 5652513 5652514 TPASS_0997 TPASS_0998 sppA   FALSE 0.154 34.000 0.000 1.000 N NA
 5652515 5652516 TPASS_0999 TPASS_1000     FALSE 0.206 178.000 0.000 NA   NA
 5652517 5652518 TPASS_1001 TPASS_1002     TRUE 0.827 14.000 0.000 NA   NA
 5652520 5652521 TPASS_1004 TPASS_1005 recR dnaZX TRUE 0.917 74.000 0.006 0.010 Y NA
 5652521 5652522 TPASS_1005 TPASS_1006 dnaZX gyrB TRUE 0.503 59.000 0.000 1.000 Y NA
 5652522 5652523 TPASS_1006 TPASS_1007 gyrB thyX FALSE 0.066 109.000 0.000 1.000 N NA
 5652523 5652524 TPASS_1007 TPASS_1008 thyX nrdA TRUE 0.585 43.000 0.000 1.000 Y NA
 5652524 5652525 TPASS_1008 TPASS_1009 nrdA gpsA FALSE 0.064 127.000 0.000 1.000 N NA
 5652525 5652526 TPASS_1009 TPASS_1010 gpsA ndk FALSE 0.420 97.000 0.004 1.000 N NA
 5652526 5652527 TPASS_1010 TPASS_1011 ndk pth FALSE 0.064 126.000 0.000 1.000 N NA
 5652527 5652528 TPASS_1011 TPASS_1012 pth sigA FALSE 0.146 35.000 0.000 1.000 N NA
 5652530 5652531 TPASS_1014 TPASS_1015   nusB FALSE 0.400 -34.000 0.000 1.000   NA
 5652531 5652532 TPASS_1015 TPASS_1016 nusB tpn39b TRUE 0.955 -3.000 0.005 1.000   NA
 5652532 5652533 TPASS_1016 TPASS_1017 tpn39b alaS TRUE 0.541 73.000 0.004 1.000   NA
 5652534 5652535 TPASS_1018 TPASS_1019   gatC TRUE 0.621 22.000 0.000 1.000   NA
 5652535 5652536 TPASS_1019 TPASS_1020 gatC gatA TRUE 0.999 1.000 0.643 0.003 Y NA
 5652536 5652537 TPASS_1020 TPASS_1021 gatA gatB TRUE 0.999 -7.000 0.492 0.003 Y NA
 5652538 5652539 TPASS_1022 TPASS_1023 sms recX TRUE 0.615 47.000 0.004 1.000   NA
 5652539 5652540 TPASS_1023 TPASS_1024 recX rpsI TRUE 0.618 128.000 0.013 1.000   NA
 5652540 5652541 TPASS_1024 TPASS_1025 rpsI rplM TRUE 0.999 16.000 0.601 0.036 Y NA
 5652542 5652543 TPASS_1026 TPASS_1027   udp FALSE 0.064 122.000 0.000 1.000 N NA
 5652544 5652545 TPASS_1028 TPASS_1029 uvrD   FALSE 0.237 83.000 0.000 NA   NA
 5652545 5652546 TPASS_1029 TPASS_1030     FALSE 0.210 158.000 0.000 NA   NA
 5652548 5652549 TPASS_1032 TPASS_1033     TRUE 0.989 12.000 0.071 NA   NA
 5652553 5652554 TPASS_1037 TPASS_1038 hlyIII tpF1 FALSE 0.152 159.000 0.000 1.000   NA
 5652556 5652557 TPASS_1040 TPASS_1041 lysS2 clpP2 TRUE 0.630 0.000 0.000 1.000 N NA