MicrobesOnline Operon Predictions for Yersinia pestis CA88-4125

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 4586327 4586328 YPE_0001 YPE_0002     FALSE 0.265 108.000 0.000 NA   NA
 4586329 4586330 YPE_0003 YPE_0004   pssA TRUE 0.599 62.000 0.089 NA   NA
 4586330 4586331 YPE_0004 YPE_0005 pssA yfiQ TRUE 0.458 173.000 0.121 0.054 N NA
 4586331 4586332 YPE_0005 YPE_0006 yfiQ   TRUE 0.871 43.000 0.222 NA   NA
 4586332 4586333 YPE_0006 YPE_0007   trxC FALSE 0.334 170.000 0.084 NA   NA
 4586335 4586336 YPE_0009 YPE_0010 emrB emrA TRUE 0.977 39.000 0.875 1.000 N NA
 4586336 4586337 YPE_0010 YPE_0011 emrA mprA FALSE 0.048 384.000 0.107 1.000 N NA
 4586337 4586338 YPE_0011 YPE_0012 mprA   FALSE 0.283 172.000 0.065 NA   NA
 4586338 4586339 YPE_0012 YPE_0013     TRUE 0.998 -3.000 0.915 NA   NA
 4586339 4586340 YPE_0013 YPE_0014     FALSE 0.159 160.000 0.060 NA N NA
 4586340 4586341 YPE_0014 YPE_0015     FALSE 0.107 228.000 0.000 NA   NA
 4586341 4586342 YPE_0015 YPE_0016     TRUE 0.901 29.000 0.203 NA   NA
 4586342 4586343 YPE_0016 YPE_0017     TRUE 0.975 -3.000 0.122 NA   NA
 4586344 4586345 YPE_0018 YPE_0019     TRUE 0.912 2.000 0.000 NA   NA
 4586345 4586346 YPE_0019 YPE_0020     FALSE 0.261 111.000 0.000 NA   NA
 4586346 4586347 YPE_0020 YPE_0021     TRUE 0.998 13.000 0.765 0.074 Y NA
 4586347 4586348 YPE_0021 YPE_0022     TRUE 0.999 -3.000 0.433 0.021 Y NA
 4586348 4586349 YPE_0022 YPE_0023     TRUE 0.998 -19.000 0.532 1.000 Y NA
 4586349 4586350 YPE_0023 YPE_0025     TRUE 0.614 32.000 0.000 NA   NA
 4586352 4586353 YPE_0026 YPE_0027     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4586354 4586355 YPE_0029 YPE_0030   hxuB FALSE 0.005 1089.000 0.000 NA N NA
 4586355 4586356 YPE_0030 YPE_0031 hxuB hmwA TRUE 0.850 41.000 0.188 NA   NA
 4586356 4586357 YPE_0031 YPE_0032 hmwA hmwC TRUE 0.464 155.000 0.125 1.000   NA
 4586357 4586358 YPE_0032 YPE_0033 hmwC   TRUE 0.918 2.000 0.000 1.000   NA
 4586360 4586361 YPE_0035 YPE_0036 gmhA   TRUE 0.517 203.000 0.229 1.000   NA
 4586363 4586364 YPE_0038 YPE_0039 nqrA nqrB TRUE 0.999 4.000 0.854 0.002 Y NA
 4586364 4586365 YPE_0039 YPE_0040 nqrB nqrC TRUE 0.999 -10.000 0.603 0.002 Y NA
 4586365 4586366 YPE_0040 YPE_0041 nqrC nqrD TRUE 0.999 -7.000 0.312 0.002 Y NA
 4586366 4586367 YPE_0041 YPE_0042 nqrD nqrE TRUE 0.995 7.000 0.188 0.002 Y NA
 4586367 4586368 YPE_0042 YPE_0043 nqrE nqrF TRUE 0.997 16.000 0.551 0.002 Y NA
 4586368 4586369 YPE_0043 YPE_0044 nqrF apbE TRUE 0.942 41.000 0.519 1.000 N NA
 4586369 4586370 YPE_0044 YPE_0045 apbE   TRUE 0.983 13.000 0.481 NA   NA
 4586374 4586375 YPE_0049 YPE_0050     FALSE 0.015 722.000 0.000 NA   NA
 4586376 4586377 YPE_0051 YPE_0052     FALSE 0.155 197.000 0.000 NA   NA
 4586378 4586379 YPE_0053 YPE_0054 gpt   TRUE 0.477 127.000 0.120 NA   NA
 4586379 4586380 YPE_0054 YPE_0055   crl TRUE 0.628 60.000 0.095 NA   NA
 4586380 4586381 YPE_0055 YPE_0056 crl proB TRUE 0.629 177.000 0.262 NA   NA
 4586381 4586382 YPE_0056 YPE_0057 proB proA TRUE 0.985 10.000 0.026 0.001 Y NA
 4586382 4586383 YPE_0057 YPE_0058 proA   FALSE 0.015 328.000 0.000 NA N NA
 4586383 4586384 YPE_0058 YPE_0059     FALSE 0.226 183.000 0.053 NA   NA
 4586384 4586385 YPE_0059 YPE_0060     FALSE 0.087 246.000 0.000 NA   NA
 4586387 4586388 YPE_0062 YPE_0063   aroL FALSE 0.035 247.000 0.000 1.000 N NA
 4586388 4586389 YPE_0063 YPE_0064 aroL   FALSE 0.076 256.000 0.000 NA   NA
 4586389 4586390 YPE_0064 YPE_0065     FALSE 0.403 64.000 0.000 NA   NA
 4586392 4586393 YPE_0067 YPE_0068     FALSE 0.006 732.000 0.000 1.000 N NA
 4586393 4586394 YPE_0068 YPE_0069     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4586396 4586397 YPE_0071 YPE_0072 phoB phoR TRUE 0.993 25.000 0.453 0.088 Y NA
 4586397 4586398 YPE_0072 YPE_0073 phoR   TRUE 0.870 22.000 0.168 1.000 N NA
 4586398 4586399 YPE_0073 YPE_0074   brnQ FALSE 0.009 474.000 0.000 1.000 N NA
 4586399 4586400 YPE_0074 YPE_0075 brnQ proY TRUE 0.951 76.000 0.261 0.089 Y NA
 4586400 4586401 YPE_0075 YPE_0076 proY malZ FALSE 0.034 561.000 0.123 1.000 N NA
 4586401 4586402 YPE_0076 YPE_0077 malZ   FALSE 0.224 155.000 0.031 1.000   NA
 4586405 4586406 YPE_0081 YPE_0082     TRUE 0.664 26.000 0.000 NA   NA
 4586407 4586408 YPE_0083 YPE_0084 tnp ahpC FALSE 0.052 215.000 0.000 1.000 N NA
 4586408 4586409 YPE_0084 YPE_0085 ahpC acpH FALSE 0.045 299.000 0.014 1.000   NA
 4586410 4586411 YPE_0086 YPE_0087 queA tgt TRUE 0.970 93.000 0.360 0.001 Y NA
 4586411 4586412 YPE_0087 YPE_0088 tgt   TRUE 0.701 112.000 0.325 NA N NA
 4586412 4586413 YPE_0088 YPE_0089   secD TRUE 0.933 28.000 0.045 NA Y NA
 4586413 4586414 YPE_0089 YPE_0090 secD secF TRUE 0.994 11.000 0.206 0.001 Y NA
 4586414 4586415 YPE_0090 YPE_0091 secF tnp FALSE 0.057 207.000 0.000 1.000 N NA
 4586415 4586416 YPE_0091 YPE_0092 tnp   FALSE 0.054 298.000 0.000 NA   NA
 4586416 4586417 YPE_0092 YPE_0093     TRUE 0.609 33.000 0.000 NA   NA
 4586417 4586418 YPE_0093 YPE_0094     FALSE 0.353 71.000 0.000 NA   NA
 4586418 4586419 YPE_0094 YPE_0095   ribD TRUE 0.606 150.000 0.277 NA N NA
 4586419 4586420 YPE_0095 YPE_0096 ribD ribH TRUE 0.818 136.000 0.034 0.002 Y NA
 4586420 4586421 YPE_0096 YPE_0097 ribH nusB TRUE 0.950 21.000 0.347 1.000 N NA
 4586421 4586422 YPE_0097 YPE_0098 nusB thiL FALSE 0.308 241.000 0.225 1.000 N NA
 4586422 4586423 YPE_0098 YPE_0099 thiL pgpA TRUE 0.976 -7.000 0.206 1.000 N NA
 4586423 4586424 YPE_0099 YPE_0100 pgpA tnp FALSE 0.053 214.000 0.000 1.000 N NA
 4586425 4586426 YPE_0101 YPE_0102 dxs ispA TRUE 0.710 156.000 0.060 1.000 Y NA
 4586426 4586427 YPE_0102 YPE_0103 ispA xseB TRUE 0.721 5.000 0.035 1.000 N NA
 4586428 4586429 YPE_0104 YPE_0105   thiI FALSE 0.282 98.000 0.000 NA   NA
 4586430 4586431 YPE_0106 YPE_0107 yajL apbA TRUE 0.969 -37.000 0.155 NA   NA
 4586433 4586434 YPE_0109 YPE_0110   cyoE FALSE 0.039 478.000 0.061 0.089 N NA
 4586434 4586435 YPE_0110 YPE_0111 cyoE cyoD TRUE 0.929 11.000 0.118 0.089 N NA
 4586435 4586436 YPE_0111 YPE_0112 cyoD cyoC TRUE 0.999 0.000 0.485 0.047 Y NA
 4586436 4586437 YPE_0112 YPE_0113 cyoC cyoB TRUE 0.999 -10.000 0.697 0.047 Y NA
 4586437 4586438 YPE_0113 YPE_0114 cyoB cyoA TRUE 0.996 5.000 0.204 0.007 Y NA
 4586438 4586439 YPE_0114 YPE_0115 cyoA   FALSE 0.035 370.000 0.000 NA   NA
 4586439 4586440 YPE_0115 YPE_0116   ampG FALSE 0.057 292.000 0.000 NA   NA
 4586440 4586441 YPE_0116 YPE_0117 ampG   TRUE 0.625 118.000 0.256 NA N NA
 4586442 4586443 YPE_0118 YPE_0119 bolA   FALSE 0.178 141.000 0.011 NA   NA
 4586443 4586444 YPE_0119 YPE_0120   tig FALSE 0.251 73.000 0.002 NA   NA
 4586444 4586445 YPE_0120 YPE_0121 tig clpP TRUE 0.490 462.000 0.351 1.000 Y NA
 4586445 4586446 YPE_0121 YPE_0122 clpP clpX TRUE 0.916 206.000 0.352 0.003 Y NA
 4586446 4586447 YPE_0122 YPE_0123 clpX lon TRUE 0.797 195.000 0.201 1.000 Y NA
 4586447 4586448 YPE_0123 YPE_0124 lon hupB FALSE 0.012 218.000 0.005 NA N NA
 4586448 4586449 YPE_0124 YPE_0125 hupB ppiD FALSE 0.026 301.000 0.046 NA N NA
 4586449 4586450 YPE_0125 YPE_0126 ppiD   FALSE 0.106 140.000 0.000 1.000 N NA
 4586450 4586451 YPE_0126 YPE_0127     FALSE 0.041 354.000 0.000 1.000   NA
 4586452 4586453 YPE_0128 YPE_0129 queC   FALSE 0.062 265.000 0.019 1.000   NA
 4586456 4586457 YPE_0132 YPE_0133   mdlA TRUE 0.536 102.000 0.179 1.000 N NA
 4586457 4586458 YPE_0133 YPE_0134 mdlA mdlB TRUE 1.000 -7.000 0.911 0.007 Y NA
 4586458 4586459 YPE_0134 YPE_0135 mdlB glnK FALSE 0.009 410.000 0.028 1.000 N NA
 4586459 4586460 YPE_0135 YPE_0136 glnK   TRUE 0.795 34.000 0.156 1.000 N NA
 4586465 4586466 YPE_0141 YPE_0142 hha   TRUE 0.650 49.000 0.080 NA   NA
 4586466 4586467 YPE_0142 YPE_0143     TRUE 0.771 159.000 0.400 NA   NA
 4586467 4586468 YPE_0143 YPE_0144   rpmJ2 FALSE 0.015 874.000 0.000 1.000   NA
 4586468 4586469 YPE_0144 YPE_0145 rpmJ2   TRUE 0.926 16.000 0.083 0.015   NA
 4586469 4586470 YPE_0145 YPE_0146   acrB FALSE 0.033 186.000 0.008 1.000 N NA
 4586470 4586471 YPE_0146 YPE_0147 acrB acrA TRUE 0.973 17.000 0.500 1.000 N NA
 4586472 4586473 YPE_0148 YPE_0149 acrR   TRUE 0.778 13.000 0.075 NA N NA
 4586473 4586474 YPE_0149 YPE_0150     FALSE 0.059 240.000 0.054 NA N NA
 4586475 4586476 YPE_0151 YPE_0152   priC TRUE 0.797 171.000 0.474 NA   NA
 4586477 4586479 YPE_0153 YPE_0154   apt FALSE 0.012 2305.000 0.000 NA   NA
 4586479 4586480 YPE_0154 YPE_0155 apt dnaX FALSE 0.020 656.000 0.088 1.000 N NA
 4586480 4586481 YPE_0155 YPE_0156 dnaX   TRUE 0.916 56.000 0.411 NA   NA
 4586481 4586482 YPE_0156 YPE_0157   recR TRUE 0.996 0.000 0.604 NA   NA
 4586482 4586483 YPE_0157 YPE_0158 recR htpG FALSE 0.059 192.000 0.028 1.000 N NA
 4586483 4586484 YPE_0158 YPE_0159 htpG adk FALSE 0.047 227.000 0.035 1.000 N NA
 4586484 4586485 YPE_0159 YPE_0160 adk hemH FALSE 0.065 90.000 0.008 1.000 N NA
 4586485 4586486 YPE_0160 YPE_0161 hemH ddhD FALSE 0.007 598.000 0.000 1.000 N NA
 4586486 4586487 YPE_0161 YPE_0162 ddhD ddhA TRUE 0.462 26.000 0.038 1.000 N NA
 4586487 4586488 YPE_0162 YPE_0163 ddhA ddhC FALSE 0.102 1097.000 0.051 1.000 Y NA
 4586488 4586489 YPE_0163 YPE_0164 ddhC prt TRUE 0.942 37.000 0.000 0.020 Y NA
 4586489 4586490 YPE_0164 YPE_0165 prt wbyH TRUE 0.783 1.000 0.000 NA N NA
 4586490 4586491 YPE_0165 YPE_0166 wbyH wzx FALSE 0.335 74.000 0.000 NA   NA
 4586491 4586492 YPE_0166 YPE_0168 wzx wbyI TRUE 0.811 11.000 0.000 NA   NA
 4586492 4586494 YPE_0168 YPE_0169 wbyI wbyJ FALSE 0.199 172.000 0.000 NA   NA
 4586494 4586495 YPE_0169 YPE_0171 wbyJ wzy TRUE 0.934 -3.000 0.000 NA   NA
 4586495 4586497 YPE_0171 YPE_0172 wzy wbyK FALSE 0.083 249.000 0.000 NA   NA
 4586497 4586498 YPE_0172 YPE_0174 wbyK gmd TRUE 0.752 16.000 0.000 NA   NA
 4586498 4586500 YPE_0174 YPE_0176 gmd fcl TRUE 0.854 6.000 0.000 NA   NA
 4586500 4586502 YPE_0176 YPE_0177 fcl manC FALSE 0.146 202.000 0.000 NA   NA
 4586502 4586503 YPE_0177 YPE_0178 manC wbyL TRUE 0.988 3.000 0.073 NA Y NA
 4586503 4586504 YPE_0178 YPE_0179 wbyL manB TRUE 0.769 5.000 0.049 NA N NA
 4586504 4586505 YPE_0179 YPE_0180 manB wzz FALSE 0.285 48.000 0.000 1.000 N NA
 4586505 4586506 YPE_0180 YPE_0181 wzz gsk FALSE 0.060 204.000 0.000 1.000 N NA
 4586507 4586508 YPE_0182 YPE_0183 rosB rosA TRUE 0.544 235.000 0.000 0.088 Y NA
 4586511 4586512 YPE_0185 YPE_0186     FALSE 0.057 292.000 0.000 NA   NA
 4586514 4586515 YPE_0188 YPE_0189   copA FALSE 0.016 521.000 0.018 NA   NA
 4586517 4586518 YPE_0191 YPE_0192     TRUE 0.997 3.000 0.313 NA Y NA
 4586518 4586519 YPE_0192 YPE_0193     TRUE 0.644 195.000 0.075 NA Y NA
 4586519 4586520 YPE_0193 YPE_0194     TRUE 0.582 77.000 0.118 1.000   NA
 4586520 4586521 YPE_0194 YPE_0195   tesA FALSE 0.056 387.000 0.072 1.000   NA
 4586522 4586523 YPE_0196 YPE_0197     TRUE 0.999 -3.000 0.535 NA Y NA
 4586524 4586525 YPE_0198 YPE_0199 purK purE TRUE 0.998 -3.000 0.136 0.001 Y NA
 4586525 4586526 YPE_0199 YPE_0200 purE lpxH FALSE 0.047 296.000 0.016 1.000   NA
 4586526 4586527 YPE_0200 YPE_0201 lpxH ppiB TRUE 0.966 11.000 0.237 1.000   NA
 4586528 4586529 YPE_0202 YPE_0203 cysS tnp FALSE 0.016 347.000 0.000 1.000 N NA
 4586529 4586530 YPE_0203 YPE_0204 tnp   TRUE 0.630 176.000 0.000 1.000 Y NA
 4586531 4586532 YPE_0205 YPE_0206     TRUE 0.728 107.000 0.259 1.000   NA
 4586535 4586536 YPE_0209 YPE_0210     TRUE 0.882 4.000 0.000 NA   NA
 4586537 4586538 YPE_0211 YPE_0212 bcp gcvR TRUE 0.946 0.000 0.102 1.000 N NA
 4586539 4586540 YPE_0213 YPE_0214 dapA nlpB TRUE 0.949 18.000 0.032 NA Y NA
 4586540 4586541 YPE_0214 YPE_0215 nlpB tnp FALSE 0.073 175.000 0.000 NA N NA
 4586541 4586542 YPE_0215 YPE_0216 tnp purC FALSE 0.102 148.000 0.000 1.000 N NA
 4586542 4586543 YPE_0216 YPE_0217 purC   FALSE 0.092 219.000 0.004 1.000   NA
 4586543 4586544 YPE_0217 YPE_0218     FALSE 0.243 94.000 0.018 NA   NA
 4586544 4586545 YPE_0218 YPE_0219     TRUE 0.960 2.000 0.100 NA   NA
 4586546 4586547 YPE_0220 YPE_0221     TRUE 0.646 68.000 0.130 NA   NA
 4586547 4586548 YPE_0221 YPE_0222   dapE TRUE 0.986 -3.000 0.163 0.027 N NA
 4586548 4586549 YPE_0222 YPE_0223 dapE   TRUE 0.984 2.000 0.292 1.000 N NA
 4586549 4586550 YPE_0223 YPE_0224     FALSE 0.171 160.000 0.006 1.000   NA
 4586551 4586552 YPE_0225 YPE_0226     TRUE 0.983 95.000 0.688 0.073 Y NA
 4586552 4586553 YPE_0226 YPE_0227     TRUE 0.996 -7.000 0.585 0.073 N NA
 4586553 4586554 YPE_0227 YPE_0228     FALSE 0.009 478.000 0.000 1.000 N NA
 4586554 4586555 YPE_0228 YPE_0229     TRUE 0.948 58.000 0.600 1.000   NA
 4586556 4586557 YPE_0230 YPE_0231     FALSE 0.059 289.000 0.000 NA   NA
 4586557 4586558 YPE_0231 YPE_0232     FALSE 0.103 231.000 0.000 NA   NA
 4586561 4586562 YPE_0235 YPE_0236 napF napD TRUE 0.982 -10.000 0.209 1.000   NA
 4586562 4586563 YPE_0236 YPE_0237 napD napA TRUE 0.999 -3.000 0.875 0.002 N NA
 4586563 4586564 YPE_0237 YPE_0238 napA napB TRUE 0.851 95.000 0.031 0.002 Y NA
 4586564 4586565 YPE_0238 YPE_0239 napB napC TRUE 0.992 25.000 0.490 1.000 Y NA
 4586565 4586566 YPE_0239 YPE_0240 napC   FALSE 0.168 184.000 0.070 1.000 N NA
 4586566 4586567 YPE_0240 YPE_0241   maeB FALSE 0.280 196.000 0.047 0.006 N NA
 4586568 4586569 YPE_0242 YPE_0243   hemF TRUE 0.903 0.000 0.016 NA   NA
 4586573 4586574 YPE_0247 YPE_0248     FALSE 0.022 487.000 0.000 NA   NA
 4586575 4586576 YPE_0249 YPE_0250     TRUE 0.697 178.000 0.333 NA   NA
 4586577 4586578 YPE_0251 YPE_0252   nanE TRUE 0.452 63.000 0.087 1.000 N NA
 4586578 4586579 YPE_0252 YPE_0253 nanE   FALSE 0.136 206.000 0.000 NA   NA
 4586581 4586582 YPE_0254 YPE_0255     TRUE 0.862 97.000 0.154 NA Y NA
 4586582 4586583 YPE_0255 YPE_0256     TRUE 0.552 40.000 0.000 NA   NA
 4586583 4586584 YPE_0256 YPE_0257     TRUE 0.934 -3.000 0.000 NA   NA
 4586584 4586585 YPE_0257 YPE_0258     FALSE 0.007 605.000 0.000 1.000 N NA
 4586585 4586586 YPE_0258 YPE_0259   cysP FALSE 0.019 315.000 0.000 1.000 N NA
 4586586 4586587 YPE_0259 YPE_0260 cysP cysU TRUE 0.996 0.000 0.479 0.002 N NA
 4586587 4586588 YPE_0260 YPE_0261 cysU cysW TRUE 0.997 0.000 0.583 0.001 N NA
 4586588 4586589 YPE_0261 YPE_0262 cysW cysA TRUE 0.995 -10.000 0.180 1.000 Y NA
 4586589 4586590 YPE_0262 YPE_0263 cysA cysM FALSE 0.127 171.000 0.049 1.000 N NA
 4586590 4586591 YPE_0263 YPE_0264 cysM   FALSE 0.088 245.000 0.000 NA   NA
 4586592 4586593 YPE_0265 YPE_0266     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4586593 4586594 YPE_0266 YPE_0267     FALSE 0.101 233.000 0.000 NA   NA
 4586595 4586596 YPE_0268 YPE_0269     TRUE 0.601 34.000 0.000 NA   NA
 4586596 4586598 YPE_0269 YPE_0270     FALSE 0.229 143.000 0.000 NA   NA
 4586598 4586599 YPE_0270 YPE_0271     TRUE 0.993 -3.000 0.357 NA   NA
 4586599 4586600 YPE_0271 YPE_0272     TRUE 0.452 60.000 0.000 1.000   NA
 4586601 4586602 YPE_0273 YPE_0274     TRUE 0.987 4.000 0.439 1.000 N NA
 4586603 4586604 YPE_0275 YPE_0276     TRUE 0.978 26.000 0.216 1.000 Y NA
 4586604 4586605 YPE_0276 YPE_0277   tnp FALSE 0.027 270.000 0.000 1.000 N NA
 4586606 4586607 YPE_0278 YPE_0279 crr ptsI TRUE 0.930 49.000 0.038 0.008 Y NA
 4586607 4586608 YPE_0279 YPE_0280 ptsI ptsH TRUE 0.928 49.000 0.033 0.008 Y NA
 4586608 4586609 YPE_0280 YPE_0281 ptsH cysK FALSE 0.005 499.000 0.019 1.000 N NA
 4586609 4586610 YPE_0281 YPE_0282 cysK   TRUE 0.786 157.000 0.122 1.000 Y NA
 4586611 4586612 YPE_0283 YPE_0284 zipA ligA FALSE 0.074 91.000 0.013 1.000 N NA
 4586612 4586613 YPE_0284 YPE_0285 ligA   TRUE 0.664 20.000 0.017 NA   NA
 4586614 4586615 YPE_0286 YPE_0287     FALSE 0.221 132.000 0.027 NA   NA
 4586615 4586616 YPE_0287 YPE_0288     FALSE 0.160 195.000 0.000 NA   NA
 4586616 4586617 YPE_0288 YPE_0289     FALSE 0.324 78.000 0.000 NA   NA
 4586617 4586618 YPE_0289 YPE_0290   tnp FALSE 0.058 291.000 0.000 NA   NA
 4586618 4586619 YPE_0290 YPE_0291 tnp gltX FALSE 0.071 193.000 0.000 1.000 N NA
 4586620 4586621 YPE_0292 YPE_0293     TRUE 0.576 37.000 0.000 NA   NA
 4586621 4586622 YPE_0293 YPE_0294     TRUE 0.520 45.000 0.000 NA   NA
 4586622 4586623 YPE_0294 YPE_0295     FALSE 0.151 200.000 0.000 NA   NA
 4586626 4586627 YPE_0298 YPE_0299     FALSE 0.301 171.000 0.071 NA   NA
 4586627 4586628 YPE_0299 YPE_0300     FALSE 0.157 136.000 0.050 1.000 N NA
 4586629 4586630 YPE_0301 YPE_0302   glk FALSE 0.216 181.000 0.048 NA   NA
 4586632 4586633 YPE_0304 YPE_0305     FALSE 0.016 245.000 0.009 1.000 N NA
 4586635 4586636 YPE_0307 YPE_0308     TRUE 0.978 27.000 0.625 NA   NA
 4586636 4586637 YPE_0308 YPE_0309     TRUE 0.998 -3.000 0.740 NA   NA
 4586638 4586639 YPE_0310 YPE_0311     TRUE 0.996 -3.000 0.333 0.046   NA
 4586639 4586640 YPE_0311 YPE_0312     FALSE 0.031 413.000 0.000 1.000   NA
 4586640 4586641 YPE_0312 YPE_0313     TRUE 0.996 2.000 0.667 1.000   NA
 4586641 4586642 YPE_0313 YPE_0314     TRUE 0.997 12.000 0.500 0.046 Y NA
 4586646 4586647 YPE_0318 YPE_0319 yfuC yfuB TRUE 0.992 -3.000 0.275 0.072 N NA
 4586647 4586648 YPE_0319 YPE_0320 yfuB yfuA TRUE 0.994 56.000 0.824 0.072 Y NA
 4586649 4586650 YPE_0321 YPE_0322 mltB   FALSE 0.004 1262.000 0.000 NA N NA
 4586651 4586652 YPE_0323 YPE_0324     TRUE 0.999 -3.000 1.000 NA   NA
 4586652 4586653 YPE_0324 YPE_0325     TRUE 0.993 1.000 0.400 NA   NA
 4586653 4586654 YPE_0325 YPE_0326     TRUE 0.997 -3.000 0.600 NA   NA
 4586654 4586655 YPE_0326 YPE_0327     TRUE 0.974 40.000 0.714 NA   NA
 4586655 4586656 YPE_0327 YPE_0328     TRUE 0.994 7.000 0.714 NA   NA
 4586656 4586657 YPE_0328 YPE_0329     TRUE 0.953 99.000 1.000 NA   NA
 4586657 4586658 YPE_0329 YPE_0330     TRUE 0.998 0.000 0.833 NA   NA
 4586659 4586660 YPE_0331 YPE_0332     TRUE 0.874 201.000 1.000 1.000 N NA
 4586660 4586661 YPE_0332 YPE_0333     TRUE 0.982 139.000 1.000 1.000 Y NA
 4586661 4586662 YPE_0333 YPE_0335     FALSE 0.246 128.000 0.000 NA   NA
 4586665 4586666 YPE_0338 YPE_0339     TRUE 0.906 105.000 0.667 NA   NA
 4586666 4586667 YPE_0339 YPE_0340     TRUE 0.988 24.000 0.800 NA   NA
 4586667 4586668 YPE_0340 YPE_0341     TRUE 0.446 326.000 0.500 NA   NA
 4586668 4586669 YPE_0341 YPE_0342     TRUE 0.459 253.000 0.333 NA   NA
 4586669 4586670 YPE_0342 YPE_0343     TRUE 0.997 4.000 0.833 NA   NA
 4586670 4586671 YPE_0343 YPE_0344     TRUE 0.934 -3.000 0.000 NA   NA
 4586671 4586673 YPE_0344 YPE_0345     FALSE 0.304 87.000 0.000 NA   NA
 4586673 4586674 YPE_0345 YPE_0346     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4586674 4586675 YPE_0346 YPE_0347     FALSE 0.015 861.000 0.000 NA   NA
 4586675 4586676 YPE_0347 YPE_0348     FALSE 0.012 3436.000 0.000 NA   NA
 4586676 4586677 YPE_0348 YPE_0349     TRUE 0.990 20.000 0.833 NA   NA
 4586677 4586678 YPE_0349 YPE_0350     TRUE 0.954 97.000 1.000 NA   NA
 4586678 4586679 YPE_0350 YPE_0351     TRUE 0.676 25.000 0.000 NA   NA
 4586680 4586681 YPE_0352 YPE_0353     FALSE 0.034 376.000 0.000 NA   NA
 4586681 4586682 YPE_0353 YPE_0354   lemA TRUE 0.920 5.000 0.074 NA   NA
 4586683 4586684 YPE_0355 YPE_0356     FALSE 0.077 255.000 0.000 NA   NA
 4586684 4586685 YPE_0356 YPE_0357   ccmA FALSE 0.025 445.000 0.000 NA   NA
 4586685 4586686 YPE_0357 YPE_0358 ccmA ccmB TRUE 0.999 -30.000 0.503 0.002 Y NA
 4586686 4586687 YPE_0358 YPE_0359 ccmB ccmC TRUE 0.988 63.000 0.501 0.001 Y NA
 4586687 4586688 YPE_0359 YPE_0360 ccmC ccmD TRUE 0.995 -3.000 0.501 1.000 N NA
 4586688 4586689 YPE_0360 YPE_0361 ccmD ccmE TRUE 0.991 -3.000 0.344 1.000 N NA
 4586689 4586690 YPE_0361 YPE_0362 ccmE ccmF TRUE 0.998 -3.000 0.211 0.002 Y NA
 4586690 4586691 YPE_0362 YPE_0363 ccmF ccmG TRUE 1.000 -3.000 0.804 0.002 Y NA
 4586691 4586692 YPE_0363 YPE_0364 ccmG ccmH TRUE 0.999 -3.000 0.578 NA Y NA
 4586692 4586693 YPE_0364 YPE_0365 ccmH   TRUE 0.999 0.000 0.727 NA Y NA
 4586693 4586694 YPE_0365 YPE_0366   vacJ TRUE 0.864 36.000 0.239 NA N NA
 4586696 4586697 YPE_0368 YPE_0369     FALSE 0.093 287.000 0.061 1.000   NA
 4586697 4586698 YPE_0369 YPE_0370   fadJ TRUE 0.998 0.000 0.430 1.000 Y NA
 4586698 4586699 YPE_0370 YPE_0371 fadJ sixA FALSE 0.007 569.000 0.000 1.000 N NA
 4586701 4586702 YPE_0373 YPE_0374 prmB aroC FALSE 0.345 77.000 0.081 1.000 N NA
 4586702 4586703 YPE_0374 YPE_0375 aroC mepA TRUE 0.629 6.000 0.025 1.000 N NA
 4586703 4586704 YPE_0375 YPE_0376 mepA   TRUE 0.968 4.000 0.160 1.000   NA
 4586704 4586705 YPE_0376 YPE_0377     TRUE 0.587 100.000 0.153 NA   NA
 4586705 4586706 YPE_0377 YPE_0378     TRUE 0.915 58.000 0.425 NA   NA
 4586711 4586712 YPE_0383 YPE_0384 flk   FALSE 0.148 285.000 0.118 NA   NA
 4586713 4586714 YPE_0385 YPE_0386   pdxB FALSE 0.346 47.000 0.043 1.000 N NA
 4586716 4586717 YPE_0388 YPE_0389 usg truA FALSE 0.169 87.000 0.040 1.000 N NA
 4586717 4586718 YPE_0389 YPE_0390 truA dedA FALSE 0.228 157.000 0.038 NA   NA
 4586718 4586719 YPE_0390 YPE_0391 dedA accD FALSE 0.085 231.000 0.020 NA   NA
 4586719 4586720 YPE_0391 YPE_0392 accD folC TRUE 0.440 249.000 0.383 1.000 N NA
 4586720 4586721 YPE_0392 YPE_0393 folC dedD TRUE 0.664 120.000 0.216 1.000   NA
 4586721 4586722 YPE_0393 YPE_0394 dedD cvpA FALSE 0.126 312.000 0.116 1.000   NA
 4586722 4586723 YPE_0394 YPE_0395 cvpA purF TRUE 0.965 13.000 0.262 1.000   NA
 4586723 4586724 YPE_0395 YPE_0396 purF ubiX FALSE 0.061 247.000 0.056 1.000 N NA
 4586724 4586725 YPE_0396 YPE_0397 ubiX hisJ FALSE 0.008 519.000 0.000 1.000 N NA
 4586725 4586726 YPE_0397 YPE_0398 hisJ hisQ TRUE 0.986 103.000 0.833 0.071 Y NA
 4586726 4586727 YPE_0398 YPE_0399 hisQ hisM TRUE 1.000 -3.000 0.900 0.020 Y NA
 4586727 4586728 YPE_0399 YPE_0400 hisM hisP TRUE 0.997 14.000 0.643 1.000 Y NA
 4586730 4586731 YPE_0402 YPE_0403     FALSE 0.149 201.000 0.000 NA   NA
 4586731 4586732 YPE_0403 YPE_0404     TRUE 0.473 222.000 0.143 0.011   NA
 4586734 4586735 YPE_0406 YPE_0691C   pbpC TRUE 0.526 44.000 0.000 NA   NA
 4586738 4586739 YPE_0409 YPE_0410     FALSE 0.068 268.000 0.000 NA   NA
 4586739 4586740 YPE_0410 YPE_0411     FALSE 0.078 254.000 0.000 NA   NA
 4586741 4586742 YPE_0412 YPE_0413     TRUE 0.688 24.000 0.000 NA   NA
 4586742 4586743 YPE_0413 YPE_0414     TRUE 0.560 39.000 0.000 NA   NA
 4586744 4586745 YPE_0415 YPE_0416 yapC   FALSE 0.020 535.000 0.000 NA   NA
 4586747 4586748 YPE_0418 YPE_0419     TRUE 0.949 -7.000 0.068 NA   NA
 4586748 4586749 YPE_0419 YPE_0420   bglB FALSE 0.216 159.000 0.000 NA   NA
 4586751 4586752 YPE_0422 YPE_0423     TRUE 0.966 26.000 0.438 1.000   NA
 4586754 4586755 YPE_0425 YPE_0426     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4586756 4586757 YPE_0427 YPE_0428     FALSE 0.285 97.000 0.000 NA   NA
 4586757 4586758 YPE_0428 YPE_0429     TRUE 0.861 12.000 0.063 NA   NA
 4586758 4586759 YPE_0429 YPE_0430     TRUE 0.997 -7.000 0.285 1.000 Y NA
 4586759 4586760 YPE_0430 YPE_0431     TRUE 0.992 -3.000 0.054 1.000 Y NA
 4586760 4586761 YPE_0431 YPE_0432     TRUE 0.969 10.000 0.238 1.000   NA
 4586761 4586762 YPE_0432 YPE_0433     TRUE 0.991 -7.000 0.179 0.003   NA
 4586762 4586763 YPE_0433 YPE_0434     FALSE 0.109 227.000 0.000 NA   NA
 4586764 4586766 YPE_0435 YPE_0436     FALSE 0.312 83.000 0.000 NA   NA
 4586766 4586767 YPE_0436 YPE_0437     FALSE 0.060 286.000 0.000 NA   NA
 4586767 4586768 YPE_0437 YPE_0438     FALSE 0.259 114.000 0.000 NA   NA
 4586768 4586769 YPE_0438 YPE_0439     FALSE 0.074 259.000 0.000 NA   NA
 4586771 4586772 YPE_0441 YPE_0442 folD   TRUE 0.827 15.000 0.055 1.000   NA
 4586773 4586774 YPE_0443 YPE_0444 tnp upp FALSE 0.085 176.000 0.000 1.000 N NA
 4586775 4586776 YPE_0445 YPE_0446 purM purN TRUE 0.941 115.000 0.230 0.002 Y NA
 4586776 4586777 YPE_0446 YPE_0447 purN speG FALSE 0.025 229.000 0.017 1.000 N NA
 4586778 4586780 YPE_0448 YPE_0449 fliB pstB1 FALSE 0.107 228.000 0.000 NA   NA
 4586780 4586781 YPE_0449 YPE_0450 pstB1 pstA TRUE 0.995 28.000 0.511 0.002 Y NA
 4586781 4586782 YPE_0450 YPE_0451 pstA pstC TRUE 0.995 0.000 0.489 1.000   NA
 4586783 4586784 YPE_0452 YPE_0453 ppk ppx TRUE 0.996 11.000 0.486 1.000 Y NA
 4586784 4586785 YPE_0453 YPE_0454 ppx   FALSE 0.299 112.000 0.047 NA   NA
 4586785 4586786 YPE_0454 YPE_0455   mgtE TRUE 0.444 52.000 0.024 NA   NA
 4586786 4586787 YPE_0455 YPE_0456 mgtE   FALSE 0.091 140.000 0.000 NA N NA
 4586788 4586789 YPE_0457 YPE_0458     TRUE 0.911 62.000 0.072 0.071 Y NA
 4586789 4586790 YPE_0458 YPE_0459     TRUE 0.920 47.000 0.000 0.071 Y NA
 4586790 4586791 YPE_0459 YPE_0460   goaG TRUE 0.868 53.000 0.000 1.000 Y NA
 4586792 4586793 YPE_0461 YPE_0462     FALSE 0.193 383.000 0.000 1.000 Y NA
 4586793 4586794 YPE_0462 YPE_0463     FALSE 0.015 364.000 0.000 1.000 N NA
 4586794 4586795 YPE_0463 YPE_0464     TRUE 0.998 0.000 1.000 1.000 N NA
 4586795 4586796 YPE_0464 YPE_0465     TRUE 0.997 -3.000 0.094 0.001 Y NA
 4586796 4586797 YPE_0465 YPE_0466   yegB TRUE 0.956 34.000 0.438 1.000   NA
 4586797 4586798 YPE_0466 YPE_0467 yegB baeR FALSE 0.014 1425.000 0.000 1.000   NA
 4586798 4586799 YPE_0467 YPE_0468 baeR   FALSE 0.319 137.000 0.062 NA   NA
 4586799 4586800 YPE_0468 YPE_0469     FALSE 0.046 275.000 0.008 NA   NA
 4586800 4586801 YPE_0469 YPE_0470   ryeE FALSE 0.275 101.000 0.000 NA   NA
 4586801 4586802 YPE_0470 YPE_0471 ryeE   FALSE 0.025 450.000 0.000 NA   NA
 4586808 4586809 YPE_0477 YPE_0478     TRUE 0.934 -3.000 0.000 NA   NA
 4586809 4586810 YPE_0478 YPE_0479     FALSE 0.403 64.000 0.000 NA   NA
 4586810 4586811 YPE_0479 YPE_0480     TRUE 0.568 38.000 0.000 NA   NA
 4586811 4586812 YPE_0480 YPE_0481     FALSE 0.403 64.000 0.000 NA   NA
 4586812 4586813 YPE_0481 YPE_0482     TRUE 0.688 24.000 0.000 NA   NA
 4586814 4586815 YPE_0483 YPE_0484 tnp guaA FALSE 0.014 375.000 0.000 1.000 N NA
 4586815 4586816 YPE_0484 YPE_0485 guaA guaB TRUE 0.899 180.000 0.190 0.001 Y NA
 4586818 4586819 YPE_0487 YPE_0488     TRUE 0.578 49.000 0.055 NA   NA
 4586819 4586820 YPE_0488 YPE_0489     FALSE 0.067 347.000 0.003 0.085   NA
 4586820 4586821 YPE_0489 YPE_0490     TRUE 0.608 148.000 0.203 1.000   NA
 4586821 4586822 YPE_0490 YPE_0491     TRUE 0.985 12.000 0.492 1.000   NA
 4586822 4586823 YPE_0491 YPE_0492   hisS TRUE 0.962 14.000 0.259 1.000   NA
 4586823 4586824 YPE_0492 YPE_0493 hisS ispG FALSE 0.358 209.000 0.207 1.000 N NA
 4586824 4586825 YPE_0493 YPE_0494 ispG   TRUE 0.823 62.000 0.233 1.000   NA
 4586825 4586826 YPE_0494 YPE_0495     TRUE 0.974 -10.000 0.153 1.000   NA
 4586826 4586827 YPE_0495 YPE_0496     FALSE 0.327 154.000 0.067 1.000   NA
 4586827 4586828 YPE_0496 YPE_0497   ndk FALSE 0.236 262.000 0.156 1.000   NA
 4586828 4586829 YPE_0497 YPE_0498 ndk   FALSE 0.045 327.000 0.000 NA   NA
 4586830 4586831 YPE_0499 YPE_0500   yapA FALSE 0.038 354.000 0.000 NA   NA
 4586832 4586833 YPE_0501 YPE_0502   pepB TRUE 0.767 79.000 0.253 NA   NA
 4586833 4586834 YPE_0502 YPE_0503 pepB   TRUE 0.571 140.000 0.171 1.000   NA
 4586834 4586835 YPE_0503 YPE_0504   fdx TRUE 0.976 30.000 0.625 1.000   NA
 4586835 4586836 YPE_0504 YPE_0505 fdx hscA TRUE 0.996 3.000 0.794 1.000 N NA
 4586836 4586837 YPE_0505 YPE_0506 hscA hscB TRUE 0.893 243.000 0.634 1.000 Y NA
 4586837 4586838 YPE_0506 YPE_0507 hscB iscA TRUE 0.861 111.000 0.500 1.000   NA
 4586838 4586839 YPE_0507 YPE_0508 iscA iscU TRUE 0.611 270.000 0.359 0.002   NA
 4586839 4586840 YPE_0508 YPE_0509 iscU iscS TRUE 0.947 31.000 0.448 1.000 N NA
 4586840 4586841 YPE_0509 YPE_0510 iscS iscR TRUE 0.899 54.000 0.424 1.000 N NA
 4586841 4586842 YPE_0510 YPE_0511 iscR   FALSE 0.351 156.000 0.126 1.000 N NA
 4586843 4586844 YPE_0512 YPE_0513   tnp FALSE 0.060 204.000 0.000 1.000 N NA
 4586845 4586846 YPE_0514 YPE_0515     TRUE 0.974 -9.000 0.150 NA   NA
 4586848 4586849 YPE_0517 YPE_0518 hcaT ail2 FALSE 0.042 352.000 0.000 1.000   NA
 4586849 4586850 YPE_0518 YPE_0519 ail2   FALSE 0.262 110.000 0.000 NA   NA
 4586850 4586851 YPE_0519 YPE_0520   glyA FALSE 0.259 113.000 0.000 NA   NA
 4586853 4586854 YPE_0522 YPE_0523 glnB nadE TRUE 0.889 15.000 0.151 1.000 N NA
 4586854 4586855 YPE_0523 YPE_0524 nadE   FALSE 0.186 160.000 0.065 1.000 N NA
 4586855 4586856 YPE_0524 YPE_0525     TRUE 0.963 -37.000 0.130 NA   NA
 4586856 4586857 YPE_0525 YPE_0526     TRUE 0.611 76.000 0.132 NA   NA
 4586857 4586858 YPE_0526 YPE_0527   tnp FALSE 0.058 206.000 0.000 1.000 N NA
 4586859 4586860 YPE_0528 YPE_0529 sroF   FALSE 0.018 580.000 0.000 NA   NA
 4586860 4586861 YPE_0529 YPE_0530     FALSE 0.046 323.000 0.000 NA   NA
 4586864 4586865 YPE_0533 YPE_0534 yfhC   FALSE 0.203 110.000 0.062 NA N NA
 4586865 4586866 YPE_0534 YPE_0535     FALSE 0.386 275.000 0.316 NA   NA
 4586867 4586868 YPE_0536 YPE_0537   yfhL FALSE 0.287 162.000 0.056 1.000   NA
 4586869 4586870 YPE_0538 YPE_0539 tnp acpS FALSE 0.063 202.000 0.000 1.000 N NA
 4586870 4586871 YPE_0539 YPE_0540 acpS pdxJ TRUE 0.988 0.000 0.326 1.000 N NA
 4586871 4586872 YPE_0540 YPE_0541 pdxJ   FALSE 0.073 190.000 0.000 1.000 N NA
 4586872 4586873 YPE_0541 YPE_0542     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4586873 4586874 YPE_0542 YPE_0543   recO TRUE 0.796 127.000 0.000 0.024 Y NA
 4586874 4586875 YPE_0543 YPE_0544 recO era TRUE 0.925 10.000 0.109 1.000   NA
 4586875 4586876 YPE_0544 YPE_0545 era rnc TRUE 0.987 -3.000 0.127 0.057   NA
 4586876 4586877 YPE_0545 YPE_0546 rnc lepB FALSE 0.103 352.000 0.117 1.000   NA
 4586877 4586878 YPE_0546 YPE_0547 lepB lepA TRUE 0.958 10.000 0.187 1.000   NA
 4586880 4586881 YPE_0549 YPE_0550 rseC rseB TRUE 0.999 -3.000 0.609 NA Y NA
 4586881 4586882 YPE_0550 YPE_0551 rseB rseA TRUE 0.999 0.000 0.856 NA Y NA
 4586882 4586883 YPE_0551 YPE_0552 rseA rpoE TRUE 0.977 26.000 0.705 NA N NA
 4586887 4586888 YPE_0556 YPE_0557 yplB yplA TRUE 0.845 78.000 0.375 NA   NA
 4586888 4586889 YPE_0557 YPE_0558 yplA   FALSE 0.200 179.000 0.000 1.000   NA
 4586891 4586892 YPE_0560 YPE_0561     TRUE 0.975 10.000 0.300 NA   NA
 4586892 4586893 YPE_0561 YPE_0562     TRUE 0.998 -3.000 0.939 NA   NA
 4586893 4586894 YPE_0562 YPE_0563     TRUE 0.655 85.000 0.173 NA   NA
 4586894 4586895 YPE_0563 YPE_0564     TRUE 0.988 -3.000 0.211 1.000   NA
 4586895 4586896 YPE_0564 YPE_4350   ybgJ TRUE 0.924 -6.000 0.000 NA   NA
 4586896 4586898 YPE_4350 YPE_0565 ybgJ   FALSE 0.017 619.000 0.000 NA   NA
 4586898 4586899 YPE_0565 YPE_0566     FALSE 0.216 123.000 0.013 1.000   NA
 4586899 4586900 YPE_0566 YPE_0567   phrB TRUE 0.690 -3.000 0.008 1.000 N NA
 4586900 4586901 YPE_0567 YPE_0568 phrB   FALSE 0.205 130.000 0.019 NA   NA
 4586901 4586902 YPE_0568 YPE_0569     FALSE 0.215 339.000 0.231 NA   NA
 4586903 4586904 YPE_0570 YPE_0571 kdpA kdpB TRUE 0.943 94.000 0.201 0.001 Y NA
 4586904 4586905 YPE_0571 YPE_0572 kdpB kdpC TRUE 0.976 212.000 0.877 0.001 Y NA
 4586905 4586906 YPE_0572 YPE_0573 kdpC kdpD TRUE 0.868 10.000 0.100 1.000 N NA
 4586906 4586907 YPE_0573 YPE_0574 kdpD kdpE TRUE 0.720 293.000 0.385 1.000 Y NA
 4586907 4586908 YPE_0574 YPE_0575 kdpE   TRUE 0.558 95.000 0.129 NA   NA
 4586909 4586910 YPE_0576 YPE_0577     TRUE 0.533 43.000 0.000 NA   NA
 4586910 4586911 YPE_0577 YPE_0578   pgm FALSE 0.121 218.000 0.000 NA   NA
 4586911 4586912 YPE_0578 YPE_0579 pgm seqA TRUE 0.802 31.000 0.151 1.000 N NA
 4586913 4586914 YPE_0580 YPE_0581     FALSE 0.260 112.000 0.000 NA   NA
 4586915 4586916 YPE_0582 YPE_0583   celD TRUE 0.850 52.000 0.222 1.000   NA
 4586916 4586917 YPE_0583 YPE_0584 celD celC TRUE 0.970 37.000 0.727 1.000 N NA
 4586917 4586918 YPE_0584 YPE_0585 celC celB TRUE 0.983 167.000 0.833 0.008 Y NA
 4586918 4586919 YPE_0585 YPE_0586 celB celA TRUE 0.995 11.000 0.250 0.008 Y NA
 4586920 4586921 YPE_0587 YPE_0588     TRUE 0.986 16.000 0.233 NA Y NA
 4586924 4586925 YPE_0591 YPE_0592     TRUE 0.425 149.000 0.095 0.085 N NA
 4586925 4586926 YPE_0592 YPE_0593   ureG FALSE 0.005 1155.000 0.000 1.000 N NA
 4586926 4586927 YPE_0593 YPE_0594 ureG ureF TRUE 0.854 127.000 0.064 0.002 Y NA
 4586927 4586928 YPE_0594 YPE_0595 ureF ureE TRUE 0.996 22.000 0.460 0.002 Y NA
 4586928 4586929 YPE_0595 YPE_0596 ureE ureC FALSE 0.158 296.000 0.067 0.001 N NA
 4586929 4586930 YPE_0596 YPE_0597 ureC ureB TRUE 0.959 90.000 0.267 0.001 Y NA
 4586930 4586931 YPE_0597 YPE_0598 ureB ureA TRUE 0.980 53.000 0.267 0.001 Y NA
 4586931 4586932 YPE_0598 YPE_0599 ureA   FALSE 0.089 1199.000 0.000 1.000 Y NA
 4586932 4586933 YPE_0599 YPE_0600     TRUE 0.997 -7.000 0.500 0.023   NA
 4586933 4586934 YPE_0600 YPE_0601     TRUE 0.998 0.000 1.000 1.000   NA
 4586934 4586935 YPE_0601 YPE_0602     TRUE 1.000 -3.000 1.000 0.070 Y NA
 4586935 4586936 YPE_0602 YPE_0603     TRUE 1.000 -3.000 1.000 0.070 Y NA
 4586936 4586937 YPE_0603 YPE_0604   cspG FALSE 0.006 884.000 0.000 1.000 N NA
 4586942 4586943 YPE_0609 YPE_0610     FALSE 0.023 478.000 0.000 NA   NA
 4586944 4586945 YPE_0611 YPE_0612 nrdH nrdI TRUE 0.972 14.000 0.440 NA N NA
 4586945 4586946 YPE_0612 YPE_0613 nrdI nrdE TRUE 0.953 51.000 0.216 NA Y NA
 4586946 4586947 YPE_0613 YPE_0614 nrdE nrdF TRUE 0.932 107.000 0.190 0.002 Y NA
 4586947 4586948 YPE_0614 YPE_0615 nrdF proV FALSE 0.006 676.000 0.000 1.000 N NA
 4586948 4586949 YPE_0615 YPE_0616 proV proW TRUE 0.999 -7.000 0.630 1.000 Y NA
 4586949 4586950 YPE_0616 YPE_0617 proW proX TRUE 0.993 48.000 0.695 0.070 Y NA
 4586953 4586954 YPE_0620 YPE_0621     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4586954 4586955 YPE_0621 YPE_0622   trp1400A FALSE 0.021 547.000 0.000 1.000   NA
 4586955 4586956 YPE_0622 YPE_0623 trp1400A   FALSE 0.312 83.000 0.000 NA   NA
 4586956 4586958 YPE_0623 YPE_0624     FALSE 0.014 1125.000 0.000 NA   NA
 4586958 4586959 YPE_0624 YPE_0625   ybfE FALSE 0.265 332.000 0.276 1.000   NA
 4586959 4586960 YPE_0625 YPE_0626 ybfE fldA FALSE 0.317 417.000 0.473 1.000   NA
 4586960 4586961 YPE_0626 YPE_0627 fldA fur FALSE 0.087 367.000 0.156 1.000 N NA
 4586962 4586963 YPE_0628 YPE_0629   glnS FALSE 0.017 706.000 0.000 1.000   NA
 4586963 4586964 YPE_0629 YPE_0630 glnS tnp FALSE 0.063 202.000 0.000 1.000 N NA
 4586964 4586965 YPE_0630 YPE_0631 tnp nagE FALSE 0.029 265.000 0.000 1.000 N NA
 4586966 4586967 YPE_0632 YPE_0633 nagB nagA TRUE 0.997 20.000 0.557 0.001 Y NA
 4586967 4586968 YPE_0633 YPE_0634 nagA nagC TRUE 0.995 17.000 0.571 1.000 Y NA
 4586968 4586969 YPE_0634 YPE_0635 nagC nagD TRUE 0.829 73.000 0.070 1.000 Y NA
 4586969 4586970 YPE_0635 YPE_0636 nagD asnB FALSE 0.015 355.000 0.000 1.000 N NA
 4586972 4586973 YPE_0638 YPE_0639     TRUE 0.837 8.000 0.000 NA   NA
 4586973 4586974 YPE_0639 YPE_0640     TRUE 0.633 30.000 0.000 NA   NA
 4586974 4586975 YPE_0640 YPE_0641     TRUE 0.609 33.000 0.000 NA   NA
 4586975 4586976 YPE_0641 YPE_0642     TRUE 0.854 6.000 0.000 NA   NA
 4586978 4586979 YPE_0644 YPE_0645 miaB   FALSE 0.160 327.000 0.220 1.000 N NA
 4586979 4586980 YPE_0645 YPE_0646     TRUE 0.995 -3.000 0.457 NA   NA
 4586980 4586981 YPE_0646 YPE_0647     TRUE 0.553 118.000 0.150 NA   NA
 4586981 4586982 YPE_0647 YPE_0648   lnt TRUE 0.987 8.000 0.557 1.000 N NA
 4586982 4586983 YPE_0648 YPE_0649 lnt gltI FALSE 0.006 765.000 0.000 1.000 N NA
 4586983 4586984 YPE_0649 YPE_0650 gltI gltJ TRUE 0.851 174.000 0.150 0.069 Y NA
 4586984 4586985 YPE_0650 YPE_0651 gltJ gltK TRUE 1.000 0.000 0.933 0.019 Y NA
 4586985 4586986 YPE_0651 YPE_0652 gltK gltL TRUE 0.998 -3.000 0.379 1.000 Y NA
 4586988 4586989 YPE_0654 YPE_0655 leuS rlpB TRUE 0.907 15.000 0.182 NA N NA
 4586989 4586990 YPE_0655 YPE_0656 rlpB holA TRUE 0.979 -3.000 0.199 NA N NA
 4586990 4586991 YPE_0656 YPE_0657 holA nadD TRUE 0.838 -10.000 0.045 1.000 N NA
 4586991 4586992 YPE_0657 YPE_0658 nadD   FALSE 0.107 224.000 0.032 NA   NA
 4586992 4586993 YPE_0658 YPE_0659     TRUE 0.985 4.000 0.307 NA   NA
 4586993 4586994 YPE_0659 YPE_0660   mrdA FALSE 0.302 82.000 0.031 NA   NA
 4586994 4586995 YPE_0660 YPE_0661 mrdA mrdB FALSE 0.105 185.000 0.046 1.000 N NA
 4586995 4586996 YPE_0661 YPE_0662 mrdB rlpA TRUE 0.613 10.000 0.035 NA N NA
 4586996 4586997 YPE_0662 YPE_0663 rlpA dacA TRUE 0.623 403.000 0.475 NA Y NA
 4586997 4586998 YPE_0663 YPE_0664 dacA   FALSE 0.257 198.000 0.081 NA   NA
 4586998 4586999 YPE_0664 YPE_0665   lipB TRUE 0.455 212.000 0.219 NA   NA
 4586999 4587000 YPE_0665 YPE_0666 lipB lipA TRUE 0.929 193.000 0.319 0.001 Y NA
 4587006 4587007 YPE_0672 YPE_0673     FALSE 0.183 182.000 0.000 NA   NA
 4587010 4587011 YPE_0676 YPE_0677     FALSE 0.009 465.000 0.000 1.000 N NA
 4587011 4587012 YPE_0677 YPE_0678     TRUE 0.990 10.000 0.199 1.000 Y NA
 4587012 4587013 YPE_0678 YPE_0679     TRUE 0.749 153.000 0.086 1.000 Y NA
 4587013 4587014 YPE_0679 YPE_0680     TRUE 0.726 32.000 0.064 1.000   NA
 4587014 4587015 YPE_0680 YPE_0681     TRUE 0.910 24.000 0.176 1.000   NA
 4587015 4587016 YPE_0681 YPE_0682     TRUE 0.997 12.000 0.444 0.015 Y NA
 4587016 4587017 YPE_0682 YPE_0683     TRUE 0.993 49.000 0.667 0.015 Y NA
 4587017 4587018 YPE_0683 YPE_0684     FALSE 0.249 126.000 0.000 NA   NA
 4587018 4587020 YPE_0684 YPE_0685     FALSE 0.056 294.000 0.000 NA   NA
 4587020 4587021 YPE_0685 YPE_0686     TRUE 0.816 14.000 0.093 1.000 N NA
 4587022 4587023 YPE_0687 YPE_0688     FALSE 0.016 689.000 0.000 NA   NA
 4587023 4587024 YPE_0688 YPE_0689     FALSE 0.035 371.000 0.000 NA   NA
 4587024 4587025 YPE_0689 YPE_0691N   pbpC TRUE 0.451 57.000 0.000 NA   NA
 4587025 4587027 YPE_0691N YPE_0692 pbpC   FALSE 0.346 72.000 0.000 NA   NA
 4587030 4587031 YPE_0695 YPE_0696 pta ackA TRUE 0.866 168.000 0.634 1.000   NA
 4587031 4587032 YPE_0696 YPE_0697 ackA   TRUE 0.908 -10.000 0.000 NA   NA
 4587033 4587034 YPE_0698 YPE_0699     FALSE 0.235 308.000 0.221 NA   NA
 4587034 4587035 YPE_0699 YPE_0700     TRUE 0.758 159.000 0.375 NA   NA
 4587035 4587036 YPE_0700 YPE_0701     FALSE 0.174 292.000 0.136 1.000   NA
 4587036 4587037 YPE_0701 YPE_0702     TRUE 0.656 27.000 0.000 NA   NA
 4587038 4587039 YPE_0703 YPE_0704 yfbR yfbQ TRUE 0.421 151.000 0.104 1.000   NA
 4587040 4587041 YPE_0705 YPE_0706   lrhA FALSE 0.025 451.000 0.000 NA   NA
 4587041 4587042 YPE_0706 YPE_0707 lrhA nuoA FALSE 0.006 684.000 0.000 1.000 N NA
 4587042 4587043 YPE_0707 YPE_0708 nuoA nuoB TRUE 0.967 102.000 0.377 0.002 Y NA
 4587043 4587044 YPE_0708 YPE_0709 nuoB nuoC TRUE 0.982 141.000 0.691 0.002 Y NA
 4587044 4587045 YPE_0709 YPE_0710 nuoC nuoE TRUE 0.988 48.000 0.407 0.006 Y NA
 4587045 4587046 YPE_0710 YPE_0711 nuoE nuoF TRUE 0.998 -3.000 0.186 0.006 Y NA
 4587046 4587047 YPE_0711 YPE_0712 nuoF nuoG TRUE 0.935 87.000 0.180 0.006 Y NA
 4587047 4587048 YPE_0712 YPE_0713 nuoG nuoH TRUE 1.000 -3.000 0.664 0.006 Y NA
 4587048 4587049 YPE_0713 YPE_0714 nuoH nuoI TRUE 0.996 15.000 0.423 0.006 Y NA
 4587049 4587050 YPE_0714 YPE_0715 nuoI nuoJ TRUE 0.997 13.000 0.428 0.006 Y NA
 4587050 4587051 YPE_0715 YPE_0716 nuoJ nuoK TRUE 0.999 -3.000 0.269 0.002 Y NA
 4587051 4587052 YPE_0716 YPE_0717 nuoK nuoL TRUE 0.998 -3.000 0.211 0.006 Y NA
 4587052 4587053 YPE_0717 YPE_0718 nuoL nuoM TRUE 0.996 40.000 0.713 0.001 Y NA
 4587053 4587054 YPE_0718 YPE_0719 nuoM nuoN TRUE 0.998 7.000 0.437 0.001 Y NA
 4587054 4587055 YPE_0719 YPE_0720 nuoN   FALSE 0.073 236.000 0.011 NA   NA
 4587056 4587057 YPE_0721 YPE_0722   idnK TRUE 0.839 78.000 0.095 NA Y NA
 4587057 4587058 YPE_0722 YPE_0723 idnK idnO TRUE 0.570 49.000 0.095 1.000 N NA
 4587058 4587059 YPE_0723 YPE_0724 idnO   FALSE 0.016 759.000 0.000 1.000   NA
 4587060 4587061 YPE_0725 YPE_0726     FALSE 0.009 466.000 0.000 1.000 N NA
 4587061 4587062 YPE_0726 YPE_0727     FALSE 0.289 531.000 0.667 1.000 N NA
 4587062 4587063 YPE_0727 YPE_0728     TRUE 0.642 30.000 0.036 NA   NA
 4587063 4587064 YPE_0728 YPE_0729   edd TRUE 0.840 4.000 0.008 NA   NA
 4587064 4587065 YPE_0729 YPE_0730 edd   FALSE 0.385 66.000 0.000 NA   NA
 4587065 4587066 YPE_0730 YPE_0731   elaB FALSE 0.017 648.000 0.000 NA   NA
 4587066 4587067 YPE_0731 YPE_0732 elaB   FALSE 0.019 555.000 0.000 NA   NA
 4587067 4587068 YPE_0732 YPE_0733   menF FALSE 0.020 528.000 0.000 NA   NA
 4587068 4587069 YPE_0733 YPE_0734 menF menD TRUE 0.780 228.000 0.281 1.000 Y NA
 4587069 4587070 YPE_0734 YPE_0735 menD yfbB TRUE 0.993 -3.000 0.355 NA   NA
 4587070 4587071 YPE_0735 YPE_0736 yfbB menB TRUE 0.964 14.000 0.280 NA   NA
 4587071 4587072 YPE_0736 YPE_0737 menB menC TRUE 0.998 0.000 0.171 0.002 Y NA
 4587072 4587073 YPE_0737 YPE_0738 menC menE TRUE 0.991 -12.000 0.283 0.002 N NA
 4587073 4587074 YPE_0738 YPE_0739 menE   FALSE 0.197 66.000 0.000 1.000 N NA
 4587077 4587078 YPE_0742 YPE_0743     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4587080 4587081 YPE_0745 YPE_0746 glnQ glnP TRUE 0.991 -3.000 0.051 1.000 Y NA
 4587081 4587082 YPE_0746 YPE_0747 glnP glnH TRUE 0.961 35.000 0.103 0.086 Y NA
 4587082 4587083 YPE_0747 YPE_0748 glnH   FALSE 0.020 570.000 0.000 1.000   NA
 4587083 4587084 YPE_0748 YPE_0749   dps FALSE 0.051 320.000 0.000 1.000   NA
 4587084 4587085 YPE_0749 YPE_0750 dps tam FALSE 0.081 257.000 0.000 1.000   NA
 4587085 4587086 YPE_0750 YPE_0751 tam   TRUE 0.849 23.000 0.000 0.049   NA
 4587086 4587087 YPE_0751 YPE_0752     TRUE 0.698 16.000 0.016 NA   NA
 4587088 4587089 YPE_0753 YPE_0754 ompX   FALSE 0.019 316.000 0.000 1.000 N NA
 4587089 4587090 YPE_0754 YPE_0755     FALSE 0.097 238.000 0.000 NA   NA
 4587090 4587091 YPE_0755 YPE_0756     FALSE 0.157 196.000 0.000 NA   NA
 4587091 4587092 YPE_0756 YPE_0757   gutB FALSE 0.018 583.000 0.000 NA   NA
 4587092 4587093 YPE_0757 YPE_0758 gutB rbsB FALSE 0.312 175.000 0.125 1.000 N NA
 4587093 4587094 YPE_0758 YPE_0759 rbsB   TRUE 0.965 40.000 0.125 0.015 Y NA
 4587094 4587095 YPE_0759 YPE_0760     TRUE 0.996 -3.000 0.111 0.015 Y NA
 4587096 4587097 YPE_0761 YPE_0762     TRUE 0.511 247.000 0.000 0.064 Y NA
 4587098 4587099 YPE_0763 YPE_0764     FALSE 0.361 69.000 0.000 NA   NA
 4587099 4587100 YPE_0764 YPE_0765     FALSE 0.036 366.000 0.000 NA   NA
 4587100 4587101 YPE_0765 YPE_0766     TRUE 0.488 117.000 0.167 1.000 N NA
 4587101 4587102 YPE_0766 YPE_0767     FALSE 0.368 96.000 0.000 0.043 N NA
 4587102 4587103 YPE_0767 YPE_0768     FALSE 0.007 652.000 0.000 1.000 N NA
 4587103 4587104 YPE_0768 YPE_0769     TRUE 0.680 144.000 0.000 1.000 Y NA
 4587104 4587105 YPE_0769 YPE_0770     TRUE 0.837 8.000 0.000 NA   NA
 4587105 4587106 YPE_0770 YPE_0771     FALSE 0.088 245.000 0.000 NA   NA
 4587108 4587109 YPE_0773 YPE_0774     TRUE 0.823 10.000 0.000 NA   NA
 4587109 4587110 YPE_0774 YPE_0775     FALSE 0.143 203.000 0.000 NA   NA
 4587110 4587111 YPE_0775 YPE_0776     FALSE 0.230 142.000 0.000 NA   NA
 4587111 4587112 YPE_0776 YPE_0777     FALSE 0.277 100.000 0.000 NA   NA
 4587112 4587113 YPE_0777 YPE_0778     FALSE 0.074 258.000 0.000 NA   NA
 4587114 4587115 YPE_0779 YPE_0780 mtlK manB2 TRUE 0.734 100.000 0.000 1.000 Y NA
 4587115 4587116 YPE_0780 YPE_0781 manB2   TRUE 0.530 17.000 0.000 1.000 N NA
 4587117 4587118 YPE_0782 YPE_0783     TRUE 0.982 109.000 0.733 0.068 Y NA
 4587118 4587119 YPE_0783 YPE_0784     TRUE 0.999 1.000 0.711 0.068 Y NA
 4587119 4587120 YPE_0784 YPE_0785     TRUE 0.670 147.000 0.000 NA Y NA
 4587120 4587121 YPE_0785 YPE_0786     TRUE 0.656 27.000 0.000 NA   NA
 4587121 4587122 YPE_0786 YPE_0787     FALSE 0.252 123.000 0.000 NA   NA
 4587122 4587123 YPE_0787 YPE_0788     TRUE 0.560 39.000 0.000 NA   NA
 11514273 4587125   YPE_0790     FALSE NA 121.000 0.000 NA   NA
 11656636 4587125   YPE_0790     FALSE NA 121.000 0.000 NA   NA
 11799028 4587125   YPE_0790     FALSE NA 121.000 0.000 NA   NA
 11514274 4587125   YPE_0790     FALSE NA 88.000 0.000 NA   NA
 11656637 4587125   YPE_0790     FALSE NA 88.000 0.000 NA   NA
 11799029 4587125   YPE_0790     FALSE NA 88.000 0.000 NA   NA
 11514275 4587125   YPE_0790     FALSE NA 60.000 0.000 NA   NA
 11656638 4587125   YPE_0790     FALSE NA 60.000 0.000 NA   NA
 11799030 4587125   YPE_0790     FALSE NA 60.000 0.000 NA   NA
 11514276 4587125   YPE_0790     FALSE NA 28.000 0.000 NA   NA
 11656639 4587125   YPE_0790     FALSE NA 28.000 0.000 NA   NA
 11799031 4587125   YPE_0790     FALSE NA 28.000 0.000 NA   NA
 11514277 4587125   YPE_0790     FALSE NA 0.000 0.000 NA   NA
 11656640 4587125   YPE_0790     FALSE NA 0.000 0.000 NA   NA
 11799032 4587125   YPE_0790     FALSE NA 0.000 0.000 NA   NA
 4587125 4587126 YPE_0790 YPE_0791     FALSE 0.033 382.000 0.000 NA   NA
 11514278 4587125   YPE_0790     FALSE NA -32.000 0.000 NA   NA
 11656641 4587125   YPE_0790     FALSE NA -32.000 0.000 NA   NA
 11799033 4587125   YPE_0790     FALSE NA -32.000 0.000 NA   NA
 11514279 4587125   YPE_0790     FALSE NA -60.000 0.000 NA   NA
 11656642 4587125   YPE_0790     FALSE NA -60.000 0.000 NA   NA
 11799034 4587125   YPE_0790     FALSE NA -60.000 0.000 NA   NA
 11514280 4587125   YPE_0790     FALSE NA -92.000 0.000 NA   NA
 11656643 4587125   YPE_0790     FALSE NA -92.000 0.000 NA   NA
 11799035 4587125   YPE_0790     FALSE NA -92.000 0.000 NA   NA
 11514281 4587125   YPE_0790     FALSE NA -120.000 0.000 NA   NA
 11656644 4587125   YPE_0790     FALSE NA -120.000 0.000 NA   NA
 11799036 4587125   YPE_0790     FALSE NA -120.000 0.000 NA   NA
 11514282 4587125   YPE_0790     FALSE NA -152.000 0.000 NA   NA
 11656645 4587125   YPE_0790     FALSE NA -152.000 0.000 NA   NA
 11799037 4587125   YPE_0790     FALSE NA -152.000 0.000 NA   NA
 11514283 4587125   YPE_0790     FALSE NA -179.000 0.000 NA   NA
 11656646 4587125   YPE_0790     FALSE NA -179.000 0.000 NA   NA
 11799038 4587125   YPE_0790     FALSE NA -179.000 0.000 NA   NA
 11514284 4587125   YPE_0790     FALSE NA -151.000 0.000 NA   NA
 11656647 4587125   YPE_0790     FALSE NA -151.000 0.000 NA   NA
 11799039 4587125   YPE_0790     FALSE NA -151.000 0.000 NA   NA
 11514285 4587125   YPE_0790     FALSE NA -119.000 0.000 NA   NA
 11656648 4587125   YPE_0790     FALSE NA -119.000 0.000 NA   NA
 11799040 4587125   YPE_0790     FALSE NA -119.000 0.000 NA   NA
 11514286 4587125   YPE_0790     FALSE NA -91.000 0.000 NA   NA
 11656649 4587125   YPE_0790     FALSE NA -91.000 0.000 NA   NA
 11799041 4587125   YPE_0790     FALSE NA -91.000 0.000 NA   NA
 11514287 4587125   YPE_0790     FALSE NA -59.000 0.000 NA   NA
 11656650 4587125   YPE_0790     FALSE NA -59.000 0.000 NA   NA
 11799042 4587125   YPE_0790     FALSE NA -59.000 0.000 NA   NA
 11514288 4587125   YPE_0790     FALSE NA -31.000 0.000 NA   NA
 11656651 4587125   YPE_0790     FALSE NA -31.000 0.000 NA   NA
 11799043 4587125   YPE_0790     FALSE NA -31.000 0.000 NA   NA
 11514289 4587125   YPE_0790     FALSE NA 1.000 0.000 NA   NA
 11656652 4587125   YPE_0790     FALSE NA 1.000 0.000 NA   NA
 11799044 4587125   YPE_0790     FALSE NA 1.000 0.000 NA   NA
 4587126 4587127 YPE_0791 YPE_0792     TRUE 0.998 -3.000 0.707 NA   NA
 4587127 4587128 YPE_0792 YPE_0793     FALSE 0.258 116.000 0.000 NA   NA
 4587128 4587129 YPE_0793 YPE_0794     TRUE 0.568 38.000 0.000 NA   NA
 4587129 4587130 YPE_0794 YPE_0795     TRUE 0.998 -3.000 0.895 NA   NA
 4587130 4587131 YPE_0795 YPE_0796     TRUE 0.990 18.000 0.787 NA   NA
 4587131 4587132 YPE_0796 YPE_0797     TRUE 0.985 11.000 0.468 NA   NA
 4587133 4587134 YPE_0798 YPE_0799     TRUE 0.993 11.000 0.714 1.000   NA
 4587134 4587135 YPE_0799 YPE_0800     TRUE 0.896 47.000 0.286 1.000   NA
 4587136 4587137 YPE_0801 YPE_0802   ypeR FALSE 0.203 486.000 0.000 0.062 Y NA
 4587139 4587140 YPE_0804 YPE_0805     TRUE 0.576 37.000 0.000 NA   NA
 4587140 4587141 YPE_0805 YPE_0806     FALSE 0.242 132.000 0.000 NA   NA
 4587141 4587142 YPE_0806 YPE_0807     FALSE 0.172 187.000 0.000 NA   NA
 4587142 4587143 YPE_0807 YPE_0808     TRUE 0.526 44.000 0.000 NA   NA
 4587143 4587144 YPE_0808 YPE_0809     FALSE 0.219 149.000 0.033 NA   NA
 4587145 4587146 YPE_0810 YPE_0811   solA FALSE 0.028 267.000 0.000 1.000 N NA
 4587146 4587147 YPE_0811 YPE_1733C solA   FALSE 0.081 251.000 0.000 NA   NA
 4587152 4587153 YPE_0815 YPE_0816     TRUE 0.676 25.000 0.000 NA   NA
 4587153 4587154 YPE_0816 YPE_0817   yfeD FALSE 0.369 68.000 0.000 NA   NA
 4587154 4587155 YPE_0817 YPE_0818 yfeD yfeC TRUE 0.999 -3.000 0.525 0.006 Y NA
 4587155 4587156 YPE_0818 YPE_0819 yfeC yfeB TRUE 0.999 0.000 0.857 1.000 Y NA
 4587156 4587157 YPE_0819 YPE_0820 yfeB yfeA TRUE 1.000 -3.000 0.894 1.000 Y NA
 4587161 4587162 YPE_0824 YPE_0825     FALSE 0.050 310.000 0.000 NA   NA
 4587163 4587164 YPE_0826 YPE_0827 thrS infC TRUE 0.993 4.000 0.186 1.000 Y NA
 4587164 4587165 YPE_0827 YPE_0828 infC rpmI TRUE 0.972 97.000 0.652 1.000 Y NA
 4587165 4587166 YPE_0828 YPE_0829 rpmI rplT TRUE 0.997 38.000 0.928 0.014 Y NA
 4587166 4587167 YPE_0829 YPE_0830 rplT pheM FALSE 0.282 98.000 0.000 NA   NA
 4587167 4587168 YPE_0830 YPE_0831 pheM pheS FALSE 0.037 357.000 0.000 NA   NA
 4587168 4587169 YPE_0831 YPE_0832 pheS pheT TRUE 0.998 14.000 0.574 0.001 Y NA
 4587169 4587170 YPE_0832 YPE_0833 pheT ihfA TRUE 0.960 5.000 0.208 1.000 N NA
 4587170 4587171 YPE_0833 YPE_0834 ihfA   FALSE 0.043 334.000 0.000 NA   NA
 4587171 4587172 YPE_0834 YPE_0835   btuC FALSE 0.124 227.000 0.044 NA   NA
 4587172 4587173 YPE_0835 YPE_0836 btuC btuE FALSE 0.387 70.000 0.084 1.000 N NA
 4587173 4587174 YPE_0836 YPE_0837 btuE btuD TRUE 0.498 22.000 0.036 1.000 N NA
 4587174 4587175 YPE_0837 YPE_0838 btuD arnB FALSE 0.076 350.000 0.129 1.000 N NA
 4587175 4587176 YPE_0838 YPE_0839 arnB arnC TRUE 0.997 -13.000 0.378 NA Y NA
 4587176 4587177 YPE_0839 YPE_0840 arnC arnA TRUE 0.997 -3.000 0.220 NA Y NA
 4587177 4587178 YPE_0840 YPE_0841 arnA   TRUE 0.999 -3.000 0.447 1.000 Y NA
 4587178 4587179 YPE_0841 YPE_0842     TRUE 0.916 -3.000 0.061 1.000 N NA
 4587179 4587180 YPE_0842 YPE_0843     TRUE 0.989 -3.000 0.227 1.000   NA
 4587180 4587181 YPE_0843 YPE_0844     TRUE 0.997 -3.000 0.613 NA   NA
 4587181 4587182 YPE_0844 YPE_0845   nlpC FALSE 0.209 280.000 0.161 NA   NA
 4587182 4587183 YPE_0845 YPE_0846 nlpC lplA FALSE 0.280 125.000 0.091 NA N NA
 4587183 4587184 YPE_0846 YPE_0847 lplA ydiU FALSE 0.403 64.000 0.000 NA   NA
 4587186 4587187 YPE_0848 YPE_0849 aroH   TRUE 0.536 157.000 0.165 1.000   NA
 4587189 4587190 YPE_0851 YPE_0852 rprA   FALSE 0.071 264.000 0.000 NA   NA
 4587191 4587192 YPE_0853 YPE_0854     FALSE 0.393 122.000 0.129 NA N NA
 4587192 4587193 YPE_0854 YPE_0855     FALSE 0.074 259.000 0.000 NA   NA
 4587193 4587194 YPE_0855 YPE_0856     FALSE 0.189 178.000 0.000 NA   NA
 4587194 4587195 YPE_0856 YPE_0857     TRUE 0.783 15.000 0.041 NA   NA
 4587195 4587196 YPE_0857 YPE_0858     TRUE 0.920 186.000 0.466 1.000 Y NA
 4587196 4587197 YPE_0858 YPE_0859     TRUE 0.965 77.000 0.482 1.000 Y NA
 4587197 4587198 YPE_0859 YPE_0860   sufS TRUE 0.980 -3.000 0.193 1.000 N NA
 4587198 4587199 YPE_0860 YPE_0861 sufS   TRUE 0.663 89.000 0.183 NA   NA
 4587199 4587200 YPE_0861 YPE_0863     FALSE 0.066 271.000 0.000 NA   NA
 4587202 4587203 YPE_0864 YPE_0865     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4587203 4587204 YPE_0865 YPE_0866   tnp FALSE 0.162 582.000 0.000 0.092 Y NA
 4587204 4587205 YPE_0866 YPE_0867 tnp lpp FALSE 0.072 191.000 0.000 1.000 N NA
 4587205 4587206 YPE_0867 YPE_0868 lpp pykF FALSE 0.019 321.000 0.000 1.000 N NA
 4587206 4587207 YPE_0868 YPE_0869 pykF   FALSE 0.018 576.000 0.000 NA   NA
 4587207 4587208 YPE_0869 YPE_0870     TRUE 0.432 60.000 0.000 NA   NA
 4587208 4587209 YPE_0870 YPE_0871     FALSE 0.091 243.000 0.000 NA   NA
 4587211 4587212 YPE_0873 YPE_0874 cfa   FALSE 0.009 480.000 0.000 1.000 N NA
 4587214 4587215 YPE_0876 YPE_0877 purR sodB FALSE 0.008 527.000 0.000 1.000 N NA
 4587215 4587216 YPE_0877 YPE_0878 sodB   FALSE 0.007 378.000 0.015 1.000 N NA
 4587217 4587218 YPE_0879 YPE_0880     FALSE 0.277 100.000 0.000 NA   NA
 4587219 4587220 YPE_0881 YPE_0882 rnt gloA TRUE 0.431 112.000 0.136 1.000 N NA
 4587222 4587223 YPE_0884 YPE_0885     TRUE 0.777 88.000 0.362 1.000 N NA
 4587223 4587224 YPE_0885 YPE_0886     FALSE 0.290 223.000 0.128 1.000   NA
 4587225 4587226 YPE_0887 YPE_0888     FALSE 0.273 132.000 0.045 NA   NA
 4587226 4587227 YPE_0888 YPE_0889   rovA FALSE 0.016 798.000 0.000 1.000   NA
 4587229 4587230 YPE_0891 YPE_0892     TRUE 0.445 58.000 0.034 NA   NA
 4587230 4587231 YPE_0892 YPE_0893   pdxH FALSE 0.294 91.000 0.034 NA   NA
 4587231 4587232 YPE_0893 YPE_0894 pdxH tyrS FALSE 0.129 182.000 0.054 1.000 N NA
 4587232 4587233 YPE_0894 YPE_0895 tyrS pdxY FALSE 0.120 155.000 0.041 1.000 N NA
 4587235 4587236 YPE_0897 YPE_0898     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4587237 4587238 YPE_0899 YPE_0900     FALSE 0.087 246.000 0.000 NA   NA
 4587238 4587239 YPE_0900 YPE_0901   tppB FALSE 0.077 255.000 0.000 NA   NA
 4587239 4587240 YPE_0901 YPE_0902 tppB   FALSE 0.017 643.000 0.000 NA   NA
 4587240 4587241 YPE_0902 YPE_0903   sapF FALSE 0.031 390.000 0.000 NA   NA
 4587241 4587242 YPE_0903 YPE_0904 sapF sapD TRUE 0.999 0.000 0.684 0.022 Y NA
 4587242 4587243 YPE_0904 YPE_0905 sapD sapC TRUE 0.999 0.000 0.667 1.000 Y NA
 4587243 4587244 YPE_0905 YPE_0906 sapC sapB TRUE 0.998 -13.000 0.284 0.066 Y NA
 4587244 4587245 YPE_0906 YPE_0907 sapB sapA TRUE 0.992 -3.000 0.264 0.066 N NA
 4587245 4587246 YPE_0907 YPE_0908 sapA   FALSE 0.237 136.000 0.000 NA   NA
 4587247 4587248 YPE_0909 YPE_0910 ryhB2 tnp FALSE 0.227 146.000 0.000 NA   NA
 4587250 4587251 YPE_0912 YPE_0913 pspA pspB TRUE 0.896 162.000 0.739 NA   NA
 4587251 4587252 YPE_0913 YPE_0914 pspB pspC TRUE 0.998 0.000 0.913 NA   NA
 4587252 4587253 YPE_0914 YPE_0915 pspC   FALSE 0.204 308.000 0.190 NA   NA
 4587253 4587254 YPE_0915 YPE_0916     TRUE 0.998 -3.000 0.791 NA   NA
 4587255 4587256 YPE_0917 YPE_0918     TRUE 0.902 62.000 0.412 NA   NA
 4587258 4587259 YPE_0920 YPE_0921 tnp tpx FALSE 0.033 253.000 0.000 1.000 N NA
 4587262 4587263 YPE_0924 YPE_0925 mppA   FALSE 0.022 243.000 0.019 1.000 N NA
 4587264 4587265 YPE_0926 YPE_0927     FALSE 0.020 312.000 0.000 1.000 N NA
 4587265 4587266 YPE_0927 YPE_0928     FALSE 0.023 271.000 0.000 NA N NA
 4587266 4587267 YPE_0928 YPE_0929   nifJ FALSE 0.022 275.000 0.000 NA N NA
 4587271 4587272 YPE_0933 YPE_0934 hslJ ldhA FALSE 0.112 70.000 0.024 NA N NA
 4587273 4587274 YPE_0935 YPE_0936     TRUE 0.893 6.000 0.057 NA   NA
 4587274 4587275 YPE_0936 YPE_0937     TRUE 0.993 10.000 0.726 NA   NA
 4587279 4587280 YPE_0941 YPE_0942 hrpA   FALSE 0.038 354.000 0.000 NA   NA
 4587280 4587281 YPE_0942 YPE_0943     TRUE 0.963 -3.000 0.077 NA   NA
 4587282 4587283 YPE_0944 YPE_0945     FALSE 0.043 334.000 0.000 NA   NA
 4587283 4587284 YPE_0945 YPE_0946     TRUE 0.934 -3.000 0.000 NA   NA
 4587285 4587286 YPE_0947 YPE_0948     TRUE 0.982 26.000 0.676 NA   NA
 4587287 4587288 YPE_0949 YPE_0950     TRUE 0.900 3.000 0.000 NA   NA
 4587290 4587291 YPE_0952 YPE_0953   rstB TRUE 0.719 94.000 0.300 1.000 N NA
 4587291 4587292 YPE_0953 YPE_0954 rstB rstA TRUE 0.972 28.000 0.181 1.000 Y NA
 4587294 4587295 YPE_0956 YPE_0957     FALSE 0.198 270.000 0.143 NA   NA
 4587296 4587297 YPE_0958 YPE_0959   pntA FALSE 0.196 121.000 0.010 NA   NA
 4587297 4587298 YPE_0959 YPE_0960 pntA pntB TRUE 0.991 73.000 0.745 0.001 Y NA
 4587299 4587300 YPE_0961 YPE_0962   fnr TRUE 0.962 135.000 0.619 1.000 Y NA
 4587300 4587301 YPE_0962 YPE_0963 fnr ogt FALSE 0.184 73.000 0.038 1.000 N NA
 4587302 4587303 YPE_0964 YPE_0965 phoA   FALSE 0.019 546.000 0.000 NA   NA
 4587303 4587304 YPE_0965 YPE_0966     TRUE 0.924 0.000 0.000 NA   NA
 4587304 4587305 YPE_0966 YPE_0967     FALSE 0.239 131.000 0.033 NA   NA
 4587306 4587307 YPE_0968 YPE_0969 ilvN   TRUE 0.998 2.000 0.649 0.002   NA
 4587309 4587310 YPE_0971 YPE_0972     TRUE 0.993 -3.000 0.333 NA   NA
 4587310 4587311 YPE_0972 YPE_0973     TRUE 0.943 5.000 0.111 NA   NA
 4587313 4587314 YPE_0975 YPE_0976     TRUE 0.999 4.000 0.520 0.065 Y NA
 4587315 4587316 YPE_0977 YPE_0978     FALSE 0.403 64.000 0.000 NA   NA
 4587316 4587317 YPE_0978 YPE_0979     FALSE 0.253 122.000 0.000 NA   NA
 4587318 4587319 YPE_0980 YPE_0981     FALSE 0.022 483.000 0.000 NA   NA
 4587319 4587320 YPE_0981 YPE_0982     TRUE 0.996 0.000 0.625 NA   NA
 4587320 4587321 YPE_0982 YPE_0983     TRUE 0.992 4.000 0.500 NA   NA
 4587321 4587322 YPE_0983 YPE_0984     TRUE 0.991 13.000 0.714 NA   NA
 4587322 4587323 YPE_0984 YPE_0985     TRUE 0.889 65.000 0.400 NA   NA
 4587323 4587324 YPE_0985 YPE_0986     TRUE 0.996 -3.000 0.500 NA   NA
 4587324 4587325 YPE_0986 YPE_0987     TRUE 0.991 3.000 0.400 NA   NA
 4587325 4587326 YPE_0987 YPE_0988     TRUE 0.960 12.000 0.222 NA   NA
 4587327 4587328 YPE_0989 YPE_0990     FALSE 0.285 97.000 0.000 NA   NA
 4587328 4587329 YPE_0990 YPE_0991     TRUE 0.703 22.000 0.000 NA   NA
 4587329 4587330 YPE_0991 YPE_0992     FALSE 0.034 375.000 0.000 NA   NA
 4587331 4587332 YPE_0993 YPE_0994 ynfK mlc TRUE 0.580 224.000 0.455 1.000 N NA
 4587333 4587335 YPE_4353 YPE_0996 ynfM tus FALSE 0.138 205.000 0.000 NA   NA
 4587337 4587338 YPE_0998 YPE_0999 manA   TRUE 0.781 240.000 0.778 NA   NA
 4587339 4587340 YPE_1000 YPE_1001     FALSE 0.136 206.000 0.000 NA   NA
 4587340 4587341 YPE_1001 YPE_1002     FALSE 0.172 194.000 0.000 1.000   NA
 4587341 4587342 YPE_1002 YPE_1003   araC TRUE 0.721 128.000 0.276 1.000   NA
 4587342 4587343 YPE_1003 YPE_1004 araC araH FALSE 0.312 221.000 0.196 1.000 N NA
 4587343 4587344 YPE_1004 YPE_1005 araH araG TRUE 0.996 18.000 0.451 0.014 Y NA
 4587344 4587345 YPE_1005 YPE_1006 araG araF TRUE 0.988 131.000 0.917 0.014 Y NA
 4587346 4587347 YPE_1007 YPE_1008 araB araA FALSE 0.196 84.000 0.046 1.000 N NA
 4587348 4587349 YPE_1009 YPE_1010     TRUE 0.912 2.000 0.000 NA   NA
 4587349 4587351 YPE_1010 YPE_1011     TRUE 0.676 25.000 0.000 NA   NA
 4587353 4587354 YPE_1012 YPE_1013   rsxA TRUE 0.539 128.000 0.148 NA   NA
 4587354 4587355 YPE_1013 YPE_1014 rsxA rsxB TRUE 0.999 0.000 0.564 0.041 Y NA
 4587355 4587356 YPE_1014 YPE_1015 rsxB rsxC TRUE 0.990 50.000 0.537 0.012 Y NA
 4587358 4587359 YPE_1017 YPE_1018     TRUE 0.999 10.000 0.924 0.041 Y NA
 4587359 4587360 YPE_1018 YPE_1019     TRUE 1.000 -3.000 0.908 0.041 Y NA
 4587360 4587361 YPE_1019 YPE_1020   nth TRUE 0.957 -3.000 0.109 1.000 N NA
 4587362 4587363 YPE_1021 YPE_1022     TRUE 0.944 35.000 0.103 1.000 Y NA
 4587364 4587365 YPE_1023 YPE_1024 rnb cstA FALSE 0.016 350.000 0.000 1.000 N NA
 4587365 4587366 YPE_1024 YPE_1025 cstA   TRUE 0.975 -7.000 0.143 NA   NA
 4587371 4587372 YPE_1030 YPE_1031   pyrF TRUE 0.866 0.000 0.045 1.000 N NA
 4587374 4587375 YPE_1033 YPE_1034     TRUE 0.992 7.000 0.576 1.000   NA
 4587375 4587376 YPE_1034 YPE_1035   pgpB TRUE 0.481 169.000 0.143 1.000   NA
 4587378 4587379 YPE_1037 YPE_1038 acnA   FALSE 0.036 364.000 0.000 NA   NA
 4587379 4587380 YPE_1038 YPE_1039   cysB FALSE 0.042 336.000 0.000 NA   NA
 4587380 4587381 YPE_1039 YPE_1040 cysB topA FALSE 0.005 397.000 0.008 1.000 N NA
 4587381 4587382 YPE_1040 YPE_1041 topA   TRUE 0.656 27.000 0.000 NA   NA
 4587385 4587386 YPE_1044 YPE_1045   btuR TRUE 0.632 17.000 0.050 1.000 N NA
 4587387 4587388 YPE_1046 YPE_1047     FALSE 0.209 425.000 0.075 NA Y NA
 4587388 4587389 YPE_1047 YPE_1048   trpH TRUE 0.957 17.000 0.281 NA   NA
 4587390 4587391 YPE_1049 YPE_1050     TRUE 0.641 29.000 0.000 NA   NA
 4587391 4587392 YPE_1050 YPE_1051   trpE FALSE 0.228 116.000 0.023 NA   NA
 4587392 4587393 YPE_1051 YPE_1052 trpE trpG TRUE 1.000 0.000 0.703 0.002 Y NA
 4587393 4587394 YPE_1052 YPE_1053 trpG trpD TRUE 0.976 12.000 0.083 1.000 Y NA
 4587394 4587395 YPE_1053 YPE_1054 trpD trpC TRUE 0.996 4.000 0.293 1.000 Y NA
 4587395 4587396 YPE_1054 YPE_1055 trpC trpB TRUE 0.927 157.000 0.221 0.001 Y NA
 4587396 4587397 YPE_1055 YPE_1056 trpB trpA TRUE 1.000 0.000 0.947 0.001 Y NA
 4587397 4587398 YPE_1056 YPE_1057 trpA   FALSE 0.032 343.000 0.018 NA   NA
 4587399 4587400 YPE_1058 YPE_1059 ompW   FALSE 0.264 109.000 0.000 NA   NA
 4587404 4587405 YPE_1062 YPE_1063 ispZ   TRUE 0.552 80.000 0.167 NA N NA
 4587405 4587406 YPE_1063 YPE_1064     FALSE 0.088 148.000 0.000 NA N NA
 4587409 4587410 YPE_1067 YPE_1068   ail1 FALSE 0.117 221.000 0.000 NA   NA
 4587411 4587412 YPE_1069 YPE_1070   cls FALSE 0.361 69.000 0.000 NA   NA
 4587412 4587413 YPE_1070 YPE_1071 cls   TRUE 0.622 165.000 0.231 NA   NA
 4587414 4587415 YPE_1072 YPE_1073 oppF oppD TRUE 0.999 -3.000 0.420 0.002 Y NA
 4587415 4587416 YPE_1073 YPE_1074 oppD oppC TRUE 0.996 12.000 0.554 1.000 Y NA
 4587416 4587417 YPE_1074 YPE_1075 oppC oppB TRUE 0.998 19.000 0.870 0.065 Y NA
 4587417 4587418 YPE_1075 YPE_1076 oppB oppA TRUE 0.913 87.000 0.151 0.065 Y NA
 4587418 4587419 YPE_1076 YPE_1077 oppA   FALSE 0.005 838.000 0.000 NA N NA
 4587420 4587421 YPE_1078 YPE_1079 adhE   FALSE 0.008 540.000 0.000 1.000 N NA
 4587421 4587422 YPE_1079 YPE_1080     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4587425 4587426 YPE_1083 YPE_1084     FALSE 0.021 307.000 0.000 1.000 N NA
 4587427 4587428 YPE_1085 YPE_1087   purU FALSE 0.309 84.000 0.000 NA   NA
 4587433 4587434 YPE_1091 YPE_1092 xthA nudG FALSE 0.217 98.000 0.056 1.000 N NA
 4587435 4587436 YPE_1093 YPE_1094   topB TRUE 0.976 -3.000 0.123 NA   NA
 4587436 4587437 YPE_1094 YPE_1095 topB selD FALSE 0.273 59.000 0.041 1.000 N NA
 4587437 4587438 YPE_1095 YPE_1096 selD   FALSE 0.044 225.000 0.033 1.000 N NA
 4587439 4587440 YPE_1097 YPE_1098 sppA ansA FALSE 0.360 117.000 0.113 1.000 N NA
 4587440 4587441 YPE_1098 YPE_1099 ansA pncA TRUE 0.599 15.000 0.040 1.000 N NA
 4587442 4587443 YPE_1100 YPE_1101   msrB TRUE 0.751 71.000 0.216 NA   NA
 4587444 4587445 YPE_1102 YPE_1103 gapA   TRUE 0.452 314.000 0.154 1.000 Y NA
 4587447 4587448 YPE_1105 YPE_1106     TRUE 0.889 150.000 0.683 NA   NA
 4587448 4587449 YPE_1106 YPE_1107     FALSE 0.203 105.000 0.007 NA   NA
 4587451 4587452 YPE_1109 YPE_1110     FALSE 0.075 265.000 0.000 1.000   NA
 4587456 4587457 YPE_1114 YPE_1115 nhaB dsbB TRUE 0.718 236.000 0.723 1.000 N NA
 4587459 4587460 YPE_1117 YPE_1118     TRUE 0.696 17.000 0.019 NA   NA
 4587460 4587461 YPE_1118 YPE_1119     TRUE 0.857 4.000 0.019 NA   NA
 4587461 4587462 YPE_1119 YPE_1120     FALSE 0.052 305.000 0.000 NA   NA
 4587463 4587464 YPE_1121 YPE_1122     TRUE 0.934 -3.000 0.000 NA   NA
 4587464 4587465 YPE_1122 YPE_1123     TRUE 0.811 11.000 0.000 NA   NA
 4587465 4587466 YPE_1123 YPE_1124     TRUE 0.742 17.000 0.000 NA   NA
 4587466 4587467 YPE_1124 YPE_1125     TRUE 0.992 0.000 0.333 NA   NA
 4587469 4587470 YPE_1127 YPE_1128     TRUE 0.457 56.000 0.000 NA   NA
 4587470 4587471 YPE_1128 YPE_1129     TRUE 0.837 8.000 0.000 NA   NA
 4587471 4587472 YPE_1129 YPE_1130     FALSE 0.280 99.000 0.000 NA   NA
 4587474 4587475 YPE_1132 YPE_1133     FALSE 0.072 261.000 0.000 NA   NA
 4587475 4587476 YPE_1133 YPE_1134     TRUE 0.996 3.000 0.714 NA   NA
 4587476 4587477 YPE_1134 YPE_1135   tnp FALSE 0.254 121.000 0.000 NA   NA
 4587477 4587478 YPE_1135 YPE_1136 tnp   FALSE 0.052 305.000 0.000 NA   NA
 4587478 4587479 YPE_1136 YPE_1137     TRUE 0.961 3.000 0.120 NA   NA
 4587479 4587480 YPE_1137 YPE_1138     TRUE 0.960 1.000 0.094 NA   NA
 4587480 4587481 YPE_1138 YPE_1139     TRUE 0.890 87.000 0.531 NA   NA
 4587481 4587482 YPE_1139 YPE_1140     TRUE 0.906 13.000 0.111 NA   NA
 4587482 4587483 YPE_1140 YPE_1141     TRUE 0.884 66.000 0.400 NA   NA
 4587483 4587484 YPE_1141 YPE_1142     TRUE 0.992 -3.000 0.294 NA   NA
 4587484 4587485 YPE_1142 YPE_1143     TRUE 0.985 2.000 0.235 NA   NA
 4587485 4587486 YPE_1143 YPE_1144     TRUE 0.912 2.000 0.000 NA   NA
 4587486 4587487 YPE_1144 YPE_1145     TRUE 0.934 -3.000 0.000 NA   NA
 4587487 4587488 YPE_1145 YPE_1146     TRUE 0.986 0.000 0.222 NA   NA
 4587488 4587489 YPE_1146 YPE_1147     TRUE 0.994 14.000 1.000 NA   NA
 4587489 4587490 YPE_1147 YPE_1148     TRUE 0.946 122.000 1.000 NA   NA
 4587490 4587493 YPE_1148 YPE_1149     FALSE 0.013 1389.000 0.000 NA   NA
 4587491 4587494 YPE_1150 YPE_1151     TRUE 0.526 44.000 0.000 NA   NA
 4587493 4587491 YPE_1149 YPE_1150     TRUE 0.889 -935.000 0.000 NA   NA
 4587494 4587495 YPE_1151 YPE_1153     FALSE 0.017 636.000 0.000 NA   NA
 4587495 4587496 YPE_1153 YPE_1154     TRUE 0.977 31.000 0.667 NA   NA
 4587496 4587497 YPE_1154 YPE_1155     FALSE 0.027 457.000 0.000 1.000   NA
 4587497 4587498 YPE_1155 YPE_1156   rzpR FALSE 0.026 462.000 0.000 1.000   NA
 4587498 4587499 YPE_1156 YPE_1157 rzpR   TRUE 0.907 -15.000 0.000 1.000   NA
 4587499 4587500 YPE_1157 YPE_1158     TRUE 0.622 31.000 0.000 NA   NA
 4587504 4587505 YPE_1162 YPE_1163     TRUE 0.498 49.000 0.000 NA   NA
 4587505 4587506 YPE_1163 YPE_1164     TRUE 0.882 4.000 0.000 NA   NA
 4587506 4587507 YPE_1164 YPE_1165     TRUE 0.916 1.000 0.000 NA   NA
 4587507 4587508 YPE_1165 YPE_1166   ninB FALSE 0.335 74.000 0.000 NA   NA
 4587509 4587510 YPE_1167 YPE_1168     TRUE 0.727 19.000 0.000 NA   NA
 4587510 4587511 YPE_1168 YPE_1169     FALSE 0.324 78.000 0.000 NA   NA
 4587511 4587512 YPE_1169 YPE_1170     TRUE 0.641 29.000 0.000 NA   NA
 4587514 4587515 YPE_1171 YPE_1172     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4587515 4587516 YPE_1172 YPE_1173     FALSE 0.013 1335.000 0.000 NA   NA
 4587516 4587517 YPE_1173 YPE_1174     TRUE 0.434 103.000 0.088 NA   NA
 4587517 4587518 YPE_1174 YPE_1175     FALSE 0.206 71.000 0.046 NA N NA
 4587518 4587519 YPE_1175 YPE_1176     TRUE 0.767 141.000 0.363 NA   NA
 4587520 4587521 YPE_1177 YPE_1178   minC FALSE 0.027 426.000 0.000 NA   NA
 4587521 4587522 YPE_1178 YPE_1179 minC minD TRUE 0.991 25.000 0.466 1.000 Y NA
 4587522 4587523 YPE_1179 YPE_1180 minD minE TRUE 0.998 4.000 0.618 NA Y NA
 4587524 4587525 YPE_1181 YPE_1182 rnd fadD FALSE 0.313 160.000 0.115 1.000 N NA
 4587525 4587526 YPE_1182 YPE_1183 fadD   FALSE 0.047 643.000 0.169 1.000 N NA
 4587526 4587527 YPE_1183 YPE_1184     FALSE 0.074 155.000 0.024 1.000 N NA
 4587527 4587528 YPE_1184 YPE_1185     FALSE 0.369 72.000 0.082 1.000 N NA
 4587530 4587531 YPE_1187 YPE_1188     TRUE 0.998 20.000 0.869 0.077 Y NA
 4587531 4587532 YPE_1188 YPE_1189   eda FALSE 0.006 694.000 0.000 1.000 N NA
 4587532 4587533 YPE_1189 YPE_1190 eda zwf TRUE 0.422 242.000 0.034 1.000 Y NA
 4587534 4587535 YPE_1191 YPE_1192 hexR pykA FALSE 0.018 330.000 0.000 1.000 N NA
 4587536 4587537 YPE_1193 YPE_1194 lpxM   FALSE 0.313 267.000 0.299 1.000 N NA
 4587537 4587538 YPE_1194 YPE_1195   znuA TRUE 0.480 84.000 0.131 1.000 N NA
 4587539 4587540 YPE_1196 YPE_1197 znuC znuB TRUE 0.999 -3.000 0.755 1.000 Y NA
 4587541 4587542 YPE_1198 YPE_1199 ruvB ruvA TRUE 0.973 162.000 0.549 0.001 Y NA
 4587542 4587543 YPE_1199 YPE_1200 ruvA ruvC TRUE 0.849 283.000 0.451 0.010 Y NA
 4587543 4587544 YPE_1200 YPE_1201 ruvC   TRUE 0.546 209.000 0.277 1.000   NA
 4587544 4587545 YPE_1201 YPE_1202   nudB TRUE 0.467 58.000 0.035 1.000   NA
 4587545 4587546 YPE_1202 YPE_1203 nudB aspS TRUE 0.881 0.000 0.050 1.000 N NA
 4587547 4587548 YPE_1204 YPE_1205     TRUE 0.406 180.000 0.126 NA   NA
 4587548 4587549 YPE_1205 YPE_1206     FALSE 0.293 191.000 0.089 NA   NA
 4587549 4587550 YPE_1206 YPE_1207     TRUE 0.992 -3.000 0.315 NA   NA
 4587551 4587552 YPE_1208 YPE_1209 cutC   FALSE 0.138 232.000 0.057 NA   NA
 4587554 4587555 YPE_1211 YPE_1212     TRUE 0.997 30.000 1.000 NA Y NA
 4587555 4587556 YPE_1212 YPE_1213   mviN FALSE 0.023 476.000 0.000 NA   NA
 4587556 4587557 YPE_1213 YPE_1214 mviN   FALSE 0.063 267.000 0.022 1.000   NA
 4587557 4587558 YPE_1214 YPE_1215   rimJ TRUE 0.847 8.000 0.000 1.000   NA
 4587559 4587560 YPE_1216 YPE_1217     FALSE 0.134 395.000 0.196 NA   NA
 4587561 4587562 YPE_1218 YPE_1219 ycdY   TRUE 0.948 37.000 0.417 1.000   NA
 4587564 4587565 YPE_1221 YPE_1222     TRUE 0.966 14.000 0.375 NA N NA
 4587566 4587568 YPE_1224 YPE_1223     TRUE 0.889 -322.000 0.000 NA   NA
 4587570 4587571 YPE_1226 YPE_1227     TRUE 0.999 -3.000 0.440 0.063 Y NA
 4587571 4587572 YPE_1227 YPE_1228     TRUE 0.984 20.000 0.480 0.063   NA
 4587572 4587573 YPE_1228 YPE_1229     FALSE 0.057 301.000 0.000 1.000   NA
 4587573 4587574 YPE_1229 YPE_1230     FALSE 0.230 142.000 0.000 NA   NA
 4587574 4587575 YPE_1230 YPE_1231     FALSE 0.053 301.000 0.000 NA   NA
 4587575 4587576 YPE_1231 YPE_1233     FALSE 0.013 1598.000 0.000 NA   NA
 4587576 4587577 YPE_1233 YPE_1234     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4587578 4587579 YPE_1235 YPE_1236 tnp kdsA FALSE 0.009 482.000 0.000 1.000 N NA
 4587579 4587580 YPE_1236 YPE_1237 kdsA   TRUE 0.471 96.000 0.089 1.000   NA
 4587580 4587581 YPE_1237 YPE_1238     TRUE 0.986 -3.000 0.195 NA   NA
 4587581 4587582 YPE_1238 YPE_1239   prmC TRUE 0.631 64.000 0.109 NA   NA
 4587582 4587583 YPE_1239 YPE_1240 prmC prfA TRUE 0.998 0.000 0.229 0.045 Y NA
 4587583 4587584 YPE_1240 YPE_1241 prfA hemA TRUE 0.890 33.000 0.171 0.045 N NA
 4587585 4587586 YPE_1242 YPE_1243   ipk TRUE 0.964 2.000 0.157 1.000 N NA
 4587586 4587587 YPE_1243 YPE_1244 ipk prsA FALSE 0.027 341.000 0.053 1.000 N NA
 4587589 4587590 YPE_1246 YPE_1247 pth ychF TRUE 0.836 164.000 0.184 1.000 Y NA
 4587590 4587591 YPE_1247 YPE_1248 ychF   FALSE 0.055 297.000 0.000 NA   NA
 4587591 4587592 YPE_1248 YPE_1249     TRUE 0.977 18.000 0.476 NA   NA
 4587593 4587594 YPE_1250 YPE_1251     TRUE 0.624 8.000 0.034 NA N NA
 4587594 4587595 YPE_1251 YPE_1252     TRUE 0.934 -3.000 0.000 NA   NA
 4587597 4587598 YPE_1254 YPE_1255     TRUE 0.912 15.000 0.133 NA   NA
 4587598 4587599 YPE_1255 YPE_1256     FALSE 0.225 149.000 0.000 NA   NA
 4587600 4587601 YPE_1257 YPE_1258 copR   TRUE 0.999 6.000 0.793 0.001 Y NA
 4587601 4587602 YPE_1258 YPE_1259     FALSE 0.069 277.000 0.000 1.000   NA
 4587602 4587603 YPE_1259 YPE_1260     TRUE 0.773 55.000 0.154 1.000   NA
 4587603 4587604 YPE_1260 YPE_1261     FALSE 0.126 213.000 0.000 NA   NA
 4587604 4587605 YPE_1261 YPE_1262     FALSE 0.015 791.000 0.000 NA   NA
 4587605 4587606 YPE_1262 YPE_1263     TRUE 0.854 6.000 0.000 NA   NA
 4587606 4587607 YPE_1263 YPE_1264     TRUE 0.902 -13.000 0.000 NA   NA
 4587607 4587608 YPE_1264 YPE_1265     FALSE 0.041 341.000 0.000 NA   NA
 4587608 4587609 YPE_1265 YPE_1266     TRUE 0.474 105.000 0.000 0.046   NA
 4587610 4587611 YPE_1267 YPE_1268     FALSE 0.091 247.000 0.000 1.000   NA
 4587614 4587615 YPE_1271 YPE_1272     FALSE 0.203 170.000 0.000 NA   NA
 4587616 4587617 YPE_1273 YPE_1274     TRUE 0.983 -3.000 0.167 NA   NA
 4587617 4587618 YPE_1274 YPE_1275     TRUE 0.934 -3.000 0.000 NA   NA
 4587618 4587619 YPE_1275 YPE_1276     TRUE 0.930 0.000 0.000 1.000   NA
 4587619 4587620 YPE_1276 YPE_1277     FALSE 0.159 134.000 0.054 NA N NA
 4587620 4587621 YPE_1277 YPE_1278     TRUE 0.996 -3.000 0.550 NA   NA
 4587621 4587622 YPE_1278 YPE_1279     TRUE 0.974 -7.000 0.133 1.000   NA
 4587622 4587623 YPE_1279 YPE_1280     TRUE 0.776 14.000 0.000 NA   NA
 4587626 4587627 YPE_1283 YPE_1284     TRUE 0.951 0.000 0.067 NA   NA
 4587628 4587629 YPE_1285 YPE_1286 hutC hutI FALSE 0.028 204.000 0.010 1.000 N NA
 4587629 4587630 YPE_1286 YPE_1287 hutI hutG TRUE 0.831 -3.000 0.031 1.000 N NA
 4587631 4587633 YPE_1288 YPE_1289   astE FALSE 0.012 3571.000 0.000 NA   NA
 4587633 4587634 YPE_1289 YPE_1290 astE astB TRUE 0.868 61.000 0.063 1.000 Y NA
 4587634 4587635 YPE_1290 YPE_1291 astB astD TRUE 0.933 24.000 0.306 1.000 N NA
 4587635 4587636 YPE_1291 YPE_1292 astD astA TRUE 0.897 -3.000 0.051 1.000 N NA
 4587636 4587637 YPE_1292 YPE_1293 astA astC TRUE 0.987 30.000 0.400 1.000 Y NA
 4587637 4587638 YPE_1293 YPE_1294 astC   FALSE 0.154 198.000 0.000 NA   NA
 4587638 4587639 YPE_1294 YPE_1295     FALSE 0.099 236.000 0.000 NA   NA
 4587640 4587641 YPE_1296 YPE_1297 narX chaA FALSE 0.024 549.000 0.000 0.077 N NA
 4587642 4587643 YPE_1298 YPE_1299 phoH   TRUE 0.544 60.000 0.065 NA   NA
 4587643 4587644 YPE_1299 YPE_1300     FALSE 0.026 439.000 0.000 NA   NA
 4587644 4587645 YPE_1300 YPE_1301   hmsS FALSE 0.043 333.000 0.000 NA   NA
 4587645 4587646 YPE_1301 YPE_1302 hmsS hmsR TRUE 0.981 -3.000 0.154 NA   NA
 4587646 4587647 YPE_1302 YPE_1303 hmsR hmsF TRUE 0.921 -10.000 0.087 1.000 N NA
 4587647 4587648 YPE_1303 YPE_1304 hmsF hmsH TRUE 0.991 13.000 0.696 1.000   NA
 4587648 4587649 YPE_1304 YPE_1305 hmsH pepP1 FALSE 0.018 669.000 0.000 1.000   NA
 4587649 4587650 YPE_1305 YPE_1306 pepP1   FALSE 0.221 141.000 0.071 1.000 N NA
 4587650 4587651 YPE_1306 YPE_1307     FALSE 0.188 173.000 0.071 1.000 N NA
 4587651 4587652 YPE_1307 YPE_1308     TRUE 0.986 0.000 0.176 0.012 N NA
 4587652 4587653 YPE_1308 YPE_1309     TRUE 0.912 -10.000 0.078 1.000 N NA
 4587653 4587654 YPE_1309 YPE_1310     TRUE 0.955 4.000 0.175 NA N NA
 4587654 4587655 YPE_1310 YPE_1311     TRUE 0.997 -10.000 0.878 NA N NA
 4587655 4587656 YPE_1311 YPE_1312     TRUE 0.995 3.000 0.625 NA   NA
 4587656 4587657 YPE_1312 YPE_1313     FALSE 0.398 301.000 0.386 NA   NA
 4587657 4587658 YPE_1313 YPE_1314     TRUE 0.695 204.000 0.133 NA Y NA
 4587658 4587659 YPE_1314 YPE_1315     FALSE 0.007 581.000 0.000 1.000 N NA
 4587659 4587660 YPE_1315 YPE_1316     FALSE 0.102 111.000 0.028 1.000 N NA
 4587661 4587662 YPE_1317 YPE_1318     FALSE 0.006 725.000 0.000 1.000 N NA
 4587666 4587667 YPE_1322 YPE_1323     TRUE 0.894 66.000 0.417 1.000   NA
 4587667 4587668 YPE_1323 YPE_1324     FALSE 0.119 220.000 0.000 NA   NA
 4587668 4587669 YPE_1324 YPE_1325     TRUE 0.676 25.000 0.000 NA   NA
 4587671 4587672 YPE_1327 YPE_1328   ripB TRUE 0.916 65.000 0.600 1.000 N NA
 4587672 4587673 YPE_1328 YPE_1329 ripB ripA TRUE 0.957 23.000 0.417 1.000 N NA
 4587673 4587674 YPE_1329 YPE_1330 ripA fimZ FALSE 0.006 826.000 0.000 1.000 N NA
 4587674 4587675 YPE_1330 YPE_1332 fimZ   FALSE 0.282 98.000 0.000 NA   NA
 4587675 4587677 YPE_1332 YPE_1333     FALSE 0.021 513.000 0.000 NA   NA
 4587677 4587678 YPE_1333 YPE_1334     TRUE 0.871 93.000 0.154 1.000 Y NA
 4587678 4587679 YPE_1334 YPE_1335     TRUE 0.983 49.000 0.500 1.000 Y NA
 4587679 4587680 YPE_1335 YPE_1336     TRUE 0.988 16.000 0.667 NA   NA
 4587680 4587681 YPE_1336 YPE_1337     TRUE 0.993 -3.000 0.333 NA   NA
 4587681 4587682 YPE_1337 YPE_1338     FALSE 0.052 303.000 0.000 NA   NA
 4587682 4587683 YPE_1338 YPE_1339     FALSE 0.213 162.000 0.000 NA   NA
 4587684 4587685 YPE_1340 YPE_1341 ybtS ybtX TRUE 0.842 28.000 0.176 NA N NA
 4587685 4587686 YPE_1341 YPE_1342 ybtX ybtQ TRUE 0.956 -7.000 0.130 NA N NA
 4587686 4587687 YPE_1342 YPE_1343 ybtQ ybtP TRUE 1.000 -13.000 0.913 0.006 Y NA
 4587688 4587689 YPE_1344 YPE_1345 ybtA irp2 TRUE 0.591 191.000 0.333 1.000 N NA
 4587689 4587690 YPE_1345 YPE_1346 irp2 irp1 TRUE 0.932 88.000 0.158 0.002 Y NA
 4587690 4587691 YPE_1346 YPE_1347 irp1 ybtU TRUE 0.999 -3.000 0.333 0.020 Y NA
 4587691 4587692 YPE_1347 YPE_1348 ybtU ybtT TRUE 0.998 -3.000 0.406 1.000 Y NA
 4587692 4587693 YPE_1348 YPE_1349 ybtT ybtE TRUE 0.988 4.000 0.094 1.000 Y NA
 4587693 4587694 YPE_1349 YPE_1350 ybtE fyuA FALSE 0.378 131.000 0.125 1.000 N NA
 4587694 4587695 YPE_1350 YPE_1351 fyuA   FALSE 0.014 873.000 0.000 NA   NA
 4587695 4587696 YPE_1351 YPE_1352     TRUE 0.837 8.000 0.000 NA   NA
 4587696 4587697 YPE_1352 YPE_1353   hef TRUE 0.526 44.000 0.000 NA   NA
 4587697 4587698 YPE_1353 YPE_1354 hef   TRUE 0.727 19.000 0.000 NA   NA
 4587698 4587699 YPE_1354 YPE_1355     TRUE 0.990 6.000 0.500 NA   NA
 4587700 4587701 YPE_1356 YPE_1357     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4587702 4587703 YPE_1358 YPE_1359     FALSE 0.161 194.000 0.000 NA   NA
 4587703 4587704 YPE_1359 YPE_1360     TRUE 0.752 16.000 0.000 NA   NA
 4587705 4587706 YPE_1361 YPE_1362     TRUE 0.937 25.000 0.000 1.000 Y NA
 4587706 4587707 YPE_1362 YPE_1363     TRUE 0.992 -7.000 0.000 0.063 Y NA
 4587707 4587708 YPE_1363 YPE_1364     TRUE 0.872 67.000 0.000 0.063 Y NA
 4587708 4587709 YPE_1364 YPE_1365     TRUE 0.651 30.000 0.000 1.000   NA
 4587711 4587712 YPE_1367 YPE_1368     FALSE 0.172 187.000 0.000 NA   NA
 4587714 4587715 YPE_1369 YPE_1370     TRUE 0.800 12.000 0.000 NA   NA
 4587716 4587718 YPE_1371 YPE_1373     FALSE 0.346 72.000 0.000 NA   NA
 4587718 4587720 YPE_1373 YPE_1374     FALSE 0.385 66.000 0.000 NA   NA
 4587721 4587722 YPE_1375 YPE_1376     TRUE 0.999 -3.000 1.000 NA   NA
 4587722 4587723 YPE_1376 YPE_1377     TRUE 0.742 17.000 0.000 NA   NA
 4587723 4587724 YPE_1377 YPE_1378     FALSE 0.026 435.000 0.000 NA   NA
 4587724 4587725 YPE_1378 YPE_1379     TRUE 0.934 -3.000 0.000 NA   NA
 4587725 4587726 YPE_1379 YPE_1380     TRUE 0.866 5.000 0.000 NA   NA
 4587726 4587727 YPE_1380 YPE_1382     FALSE 0.209 165.000 0.000 NA   NA
 4587727 4587729 YPE_1382 YPE_1383     FALSE 0.273 102.000 0.000 NA   NA
 4587729 4587730 YPE_1383 YPE_1384   tnpA TRUE 0.934 72.000 0.521 0.087   NA
 4587730 4587731 YPE_1384 YPE_1385 tnpA   FALSE 0.119 220.000 0.000 NA   NA
 4587732 4587733 YPE_1386 YPE_1388     FALSE 0.035 369.000 0.000 NA   NA
 4587736 4587737 YPE_1390 YPE_1391     TRUE 0.811 11.000 0.000 NA   NA
 4587737 4587738 YPE_1391 YPE_1392     TRUE 0.477 53.000 0.000 NA   NA
 4587738 4587739 YPE_1392 YPE_1393   pgsA FALSE 0.227 145.000 0.000 NA   NA
 4587739 4587740 YPE_1393 YPE_1394 pgsA uvrC TRUE 0.772 59.000 0.227 1.000 N NA
 4587740 4587741 YPE_1394 YPE_1395 uvrC uvrY TRUE 0.967 -7.000 0.086 0.031 N NA
 4587742 4587743 YPE_1396 YPE_1397     FALSE 0.393 128.000 0.085 NA   NA
 4587746 4587747 YPE_1400 YPE_1401 ail3   FALSE 0.016 687.000 0.000 NA   NA
 4587751 4587752 YPE_1405 YPE_1406     TRUE 0.994 11.000 0.378 NA Y NA
 4587752 4587753 YPE_1406 YPE_1407     TRUE 0.985 30.000 0.356 NA Y NA
 4587753 4587754 YPE_1407 YPE_1408   putP FALSE 0.017 333.000 0.000 1.000 N NA
 4587754 4587755 YPE_1408 YPE_1409 putP   TRUE 0.633 30.000 0.000 NA   NA
 4587756 4587757 YPE_1410 YPE_1411 putA   FALSE 0.024 464.000 0.000 NA   NA
 4587757 4587758 YPE_1411 YPE_1412     TRUE 0.692 34.000 0.061 NA   NA
 4587759 4587760 YPE_1413 YPE_1414     TRUE 0.996 3.000 0.150 0.004 Y NA
 4587760 4587761 YPE_1414 YPE_1415   fliY TRUE 0.995 0.000 0.100 0.078 Y NA
 4587761 4587762 YPE_1415 YPE_1416 fliY dcyD TRUE 0.948 124.000 0.469 1.000 Y NA
 4587762 4587763 YPE_1416 YPE_1417 dcyD fliZ FALSE 0.092 289.000 0.062 1.000   NA
 4587763 4587764 YPE_1417 YPE_1418 fliZ fliA FALSE 0.256 222.000 0.108 1.000   NA
 4587764 4587765 YPE_1418 YPE_1419 fliA fliC FALSE 0.016 347.000 0.000 1.000 N NA
 4587766 4587767 YPE_1420 YPE_1421 fliD fliS TRUE 0.996 11.000 0.284 0.004 Y NA
 4587767 4587768 YPE_1421 YPE_1422 fliS fliT TRUE 0.977 11.000 0.324 1.000   NA
 4587768 4587769 YPE_1422 YPE_1423 fliT   TRUE 0.464 55.000 0.000 NA   NA
 4587769 4587770 YPE_1423 YPE_1424     TRUE 0.844 7.000 0.000 NA   NA
 4587770 4587771 YPE_1424 YPE_1426     FALSE 0.038 354.000 0.000 NA   NA
 4587771 4587773 YPE_1426 YPE_1427     FALSE 0.214 161.000 0.000 NA   NA
 4587774 4587775 YPE_1428 YPE_1429     TRUE 0.759 11.000 0.013 NA   NA
 4587775 4587776 YPE_1429 YPE_1430   fliE FALSE 0.056 294.000 0.000 NA   NA
 4587777 4587778 YPE_1431 YPE_1432 fliF fliG TRUE 0.998 -3.000 0.220 0.010 Y NA
 4587778 4587779 YPE_1432 YPE_1433 fliG fliH TRUE 0.992 -7.000 0.007 0.006 Y NA
 4587779 4587780 YPE_1433 YPE_1434 fliH fliI TRUE 0.995 -37.000 0.115 0.006 Y NA
 4587780 4587781 YPE_1434 YPE_1435 fliI fliJ TRUE 0.862 100.000 0.073 0.013 Y NA
 4587781 4587782 YPE_1435 YPE_1436 fliJ fliK TRUE 0.999 -3.000 0.317 0.010 Y NA
 4587782 4587783 YPE_1436 YPE_1437 fliK fliL TRUE 0.487 267.000 0.119 1.000 Y NA
 4587783 4587784 YPE_1437 YPE_1438 fliL fliM TRUE 0.999 6.000 0.957 0.002 Y NA
 4587784 4587785 YPE_1438 YPE_1439 fliM fliN TRUE 0.998 -3.000 0.137 0.002 Y NA
 4587785 4587786 YPE_1439 YPE_1440 fliN fliO TRUE 0.929 168.000 0.443 1.000 Y NA
 4587786 4587787 YPE_1440 YPE_1441 fliO fliP TRUE 0.997 -3.000 0.203 1.000 Y NA
 4587787 4587788 YPE_1441 YPE_1442 fliP fliQ TRUE 0.987 106.000 0.827 0.013 Y NA
 4587788 4587789 YPE_1442 YPE_1443 fliQ fliR TRUE 0.994 3.000 0.069 0.003 Y NA
 4587789 4587790 YPE_1443 YPE_1444 fliR   TRUE 0.944 21.000 0.000 NA Y NA
 4587790 4587791 YPE_1444 YPE_1445     TRUE 0.520 45.000 0.000 NA   NA
 4587792 4587793 YPE_1446 YPE_1447     TRUE 0.873 49.000 0.000 NA Y NA
 4587793 4587794 YPE_1447 YPE_1448     TRUE 0.951 96.000 0.286 0.014 Y NA
 4587794 4587795 YPE_1448 YPE_1449     TRUE 0.813 66.000 0.000 NA Y NA
 4587795 4587796 YPE_1449 YPE_1450     TRUE 0.995 43.000 1.000 NA Y NA
 4587796 4587797 YPE_1450 YPE_1451     FALSE 0.240 148.000 0.000 1.000   NA
 4587799 4587800 YPE_1453 YPE_1454 flgL flgK TRUE 0.897 139.000 0.142 0.002 Y NA
 4587800 4587801 YPE_1454 YPE_1455 flgK flgJ TRUE 0.717 871.000 0.705 0.004 Y NA
 4587801 4587802 YPE_1455 YPE_1456 flgJ flgI TRUE 0.994 0.000 0.048 0.013 Y NA
 4587802 4587803 YPE_1456 YPE_1457 flgI flgH TRUE 0.983 15.000 0.085 0.013 Y NA
 4587803 4587804 YPE_1457 YPE_1458 flgH flgG TRUE 0.893 144.000 0.268 1.000 Y NA
 4587804 4587805 YPE_1458 YPE_1459 flgG flgF TRUE 0.999 -19.000 0.420 0.001 Y NA
 4587805 4587806 YPE_1459 YPE_1460 flgF flgE TRUE 0.979 22.000 0.095 0.007 Y NA
 4587806 4587807 YPE_1460 YPE_1461 flgE flgD TRUE 0.542 202.000 0.000 NA Y NA
 4587807 4587808 YPE_1461 YPE_1462 flgD flgC TRUE 0.984 15.000 0.186 NA Y NA
 4587808 4587809 YPE_1462 YPE_1463 flgC flgB TRUE 0.999 6.000 0.824 0.006 Y NA
 4587810 4587811 YPE_1464 YPE_1465 flgA flgM TRUE 0.908 151.000 0.330 NA Y NA
 4587811 4587812 YPE_1465 YPE_1466 flgM flgN TRUE 0.995 19.000 0.361 0.003 Y NA
 4587813 4587814 YPE_1467 YPE_1469 tnp flhE FALSE 0.014 1658.000 0.000 1.000   NA
 4587814 4587815 YPE_1469 YPE_1470 flhE flhA TRUE 0.978 0.000 0.053 0.003   NA
 4587815 4587816 YPE_1470 YPE_1471 flhA flhB TRUE 0.998 0.000 0.287 0.013 Y NA
 4587817 4587818 YPE_1472 YPE_1473     TRUE 0.998 -6.000 0.800 NA   NA
 4587821 4587822 YPE_1476 YPE_1477 ryeB   FALSE 0.213 162.000 0.000 NA   NA
 4587822 4587823 YPE_1477 YPE_1478     TRUE 0.930 82.000 0.704 NA   NA
 4587823 4587824 YPE_1478 YPE_1479     TRUE 0.995 3.000 0.613 1.000   NA
 4587824 4587825 YPE_1479 YPE_1480   ftn FALSE 0.032 388.000 0.029 1.000   NA
 4587827 4587828 YPE_1482 YPE_1483 pip ptrB FALSE 0.038 722.000 0.000 0.023   NA
 4587828 4587829 YPE_1483 YPE_1484 ptrB   FALSE 0.050 310.000 0.000 NA   NA
 4587829 4587830 YPE_1484 YPE_1485     FALSE 0.342 92.000 0.048 NA   NA
 4587830 4587831 YPE_1485 YPE_1486     TRUE 0.623 40.000 0.053 NA   NA
 4587831 4587832 YPE_1486 YPE_1487   dbpA FALSE 0.234 94.000 0.014 NA   NA
 4587835 4587836 YPE_1490 YPE_1491     TRUE 0.975 -3.000 0.116 1.000   NA
 4587836 4587837 YPE_1491 YPE_1492     FALSE 0.174 708.000 0.409 1.000   NA
 4587838 4587839 YPE_1493 YPE_1494 hpaC hpaB TRUE 0.971 21.000 0.226 0.001   NA
 4587839 4587840 YPE_1494 YPE_1495 hpaB hpaX FALSE 0.187 68.000 0.000 1.000 N NA
 4587840 4587841 YPE_1495 YPE_1496 hpaX hpaI TRUE 0.973 26.000 0.175 1.000 Y NA
 4587841 4587842 YPE_1496 YPE_1497 hpaI hpaH TRUE 0.978 11.000 0.439 1.000 N NA
 4587842 4587843 YPE_1497 YPE_1498 hpaH hpaF TRUE 0.986 -6.000 0.282 1.000 N NA
 4587843 4587844 YPE_1498 YPE_1499 hpaF hpaD TRUE 0.954 25.000 0.330 1.000   NA
 4587844 4587845 YPE_1499 YPE_1500 hpaD hpaE TRUE 0.804 119.000 0.378 1.000   NA
 4587845 4587846 YPE_1500 YPE_1502 hpaE hpaG TRUE 0.934 -3.000 0.000 NA   NA
 4587850 4587851 YPE_1506 YPE_1507 manX manY TRUE 0.871 92.000 0.064 0.008 Y NA
 4587851 4587852 YPE_1507 YPE_1508 manY manZ TRUE 0.999 7.000 0.939 0.008 Y NA
 4587852 4587853 YPE_1508 YPE_1509 manZ   TRUE 0.854 200.000 0.755 NA   NA
 4587853 4587854 YPE_1509 YPE_1510     FALSE 0.027 429.000 0.000 NA   NA
 4587856 4587857 YPE_1512 YPE_1513     FALSE 0.115 222.000 0.000 NA   NA
 4587860 4587861 YPE_1516 YPE_1517     TRUE 0.901 43.000 0.286 NA   NA
 4587863 4587864 YPE_1519 YPE_1520     TRUE 0.594 237.000 0.429 NA   NA
 4587864 4587865 YPE_1520 YPE_1521     TRUE 0.939 43.000 0.429 NA   NA
 4587865 4587866 YPE_1521 YPE_1522     FALSE 0.184 263.000 0.125 NA   NA
 4587871 4587872 YPE_1527 YPE_1528     FALSE 0.085 103.000 0.021 1.000 N NA
 4587872 4587873 YPE_1528 YPE_1529     FALSE 0.097 237.000 0.000 NA   NA
 4587873 4587874 YPE_1529 YPE_1530     FALSE 0.031 390.000 0.000 NA   NA
 4587874 4587875 YPE_1530 YPE_1531     FALSE 0.189 178.000 0.000 NA   NA
 4587876 4587878 YPE_1532 YPE_1533     FALSE 0.346 72.000 0.000 NA   NA
 4587878 4587879 YPE_1533 YPE_1534     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4587881 4587882 YPE_1537 YPE_1538 kduI kduD TRUE 0.588 92.000 0.192 1.000 N NA
 4587882 4587883 YPE_1538 YPE_1539 kduD kdgC FALSE 0.046 336.000 0.000 1.000   NA
 4587883 4587884 YPE_1539 YPE_1540 kdgC   TRUE 0.875 41.000 0.217 1.000   NA
 4587884 4587885 YPE_1540 YPE_1541     TRUE 1.000 -7.000 0.917 0.062 Y NA
 4587885 4587886 YPE_1541 YPE_1542     TRUE 0.987 14.000 0.131 0.062 Y NA
 4587886 4587887 YPE_1542 YPE_1543     TRUE 0.982 16.000 0.101 0.062 Y NA
 4587887 4587888 YPE_1543 YPE_1544     FALSE 0.120 298.000 0.000 0.062   NA
 4587888 4587889 YPE_1544 YPE_1545   ydjM FALSE 0.022 480.000 0.000 NA   NA
 4587889 4587890 YPE_1545 YPE_1546 ydjM ydjN FALSE 0.278 204.000 0.102 NA   NA
 4587891 4587892 YPE_1547 YPE_1548   kdgR FALSE 0.013 385.000 0.000 1.000 N NA
 4587892 4587893 YPE_1548 YPE_1549 kdgR ogl FALSE 0.135 187.000 0.059 1.000 N NA
 4587895 4587896 YPE_1551 YPE_1552     TRUE 0.996 -3.000 0.167 1.000 Y NA
 4587896 4587897 YPE_1552 YPE_1553     TRUE 0.996 -3.000 0.167 1.000 Y NA
 4587897 4587898 YPE_1553 YPE_1554     TRUE 0.981 82.000 0.750 1.000 Y NA
 4587898 4587899 YPE_1554 YPE_1555     TRUE 0.969 153.000 0.750 1.000 Y NA
 4587899 4587900 YPE_1555 YPE_1556     FALSE 0.007 658.000 0.000 1.000 N NA
 4587900 4587901 YPE_1556 YPE_1557   prc FALSE 0.037 474.000 0.042 0.023 N NA
 4587901 4587902 YPE_1557 YPE_1558 prc proQ TRUE 0.939 20.000 0.304 NA N NA
 4587902 4587903 YPE_1558 YPE_1559 proQ   TRUE 0.798 96.000 0.081 NA Y NA
 4587904 4587905 YPE_1560 YPE_1561     TRUE 0.997 -31.000 0.840 NA   NA
 4587905 4587906 YPE_1561 YPE_1562     FALSE 0.023 479.000 0.000 NA   NA
 4587906 4587907 YPE_1562 YPE_1563     TRUE 0.966 6.000 0.192 NA   NA
 4587907 4587908 YPE_1563 YPE_1564     TRUE 0.987 21.000 0.714 NA   NA
 4587908 4587909 YPE_1564 YPE_1565     TRUE 0.904 31.000 0.219 NA   NA
 4587909 4587910 YPE_1565 YPE_1566     TRUE 0.973 171.000 0.879 NA Y NA
 4587910 4587911 YPE_1566 YPE_1567     TRUE 0.865 206.000 0.848 NA   NA
 4587911 4587912 YPE_1567 YPE_1568     FALSE 0.133 208.000 0.000 NA   NA
 4587915 4587916 YPE_1571 YPE_1572     FALSE 0.219 155.000 0.000 NA   NA
 4587916 4587917 YPE_1572 YPE_1573     FALSE 0.031 393.000 0.000 NA   NA
 4587919 4587920 YPE_1575 YPE_1576     FALSE 0.277 100.000 0.000 NA   NA
 4587920 4587922 YPE_1576 YPE_1578     FALSE 0.037 357.000 0.000 NA   NA
 4587924 4587925 YPE_1580 YPE_1581 cheZ cheY TRUE 0.994 10.000 0.333 1.000 Y NA
 4587925 4587926 YPE_1581 YPE_1582 cheY cheB TRUE 0.951 101.000 0.286 0.010 Y NA
 4587926 4587927 YPE_1582 YPE_1583 cheB cheR TRUE 0.992 0.000 0.087 1.000 Y NA
 4587927 4587928 YPE_1583 YPE_1585 cheR tar FALSE 0.084 1967.000 0.000 1.000 Y NA
 4587928 4587929 YPE_1585 YPE_1586 tar   FALSE 0.094 241.000 0.000 NA   NA
 4587929 4587930 YPE_1586 YPE_1587     FALSE 0.361 69.000 0.000 NA   NA
 4587930 4587931 YPE_1587 YPE_1588     FALSE 0.020 528.000 0.000 NA   NA
 4587931 4587932 YPE_1588 YPE_1589     FALSE 0.023 475.000 0.000 NA   NA
 4587933 4587934 YPE_1590 YPE_1591 sgaU   TRUE 0.992 -3.000 0.400 NA N NA
 4587934 4587935 YPE_1591 YPE_1592     TRUE 0.970 13.000 0.400 NA N NA
 4587936 4587937 YPE_1593 YPE_1594 cheW cheA TRUE 0.960 163.000 0.447 0.003 Y NA
 4587937 4587938 YPE_1594 YPE_1595 cheA motB TRUE 0.998 11.000 0.913 1.000 Y NA
 4587938 4587939 YPE_1595 YPE_1596 motB motA TRUE 0.999 -3.000 0.429 1.000 Y NA
 4587939 4587940 YPE_1596 YPE_1597 motA flhC TRUE 0.679 205.000 0.408 1.000   NA
 4587940 4587941 YPE_1597 YPE_1599 flhC mgtB FALSE 0.014 1543.000 0.000 1.000   NA
 4587941 4587942 YPE_1599 YPE_1600 mgtB mgtC FALSE 0.049 401.000 0.065 1.000   NA
 4587942 4587943 YPE_1600 YPE_1601 mgtC   FALSE 0.042 340.000 0.000 NA   NA
 4587946 4587947 YPE_1604 YPE_1605     FALSE 0.256 215.000 0.105 NA   NA
 4587948 4587949 YPE_1606 YPE_1607 lacZ   FALSE 0.012 407.000 0.000 1.000 N NA
 4587949 4587950 YPE_1607 YPE_1608     FALSE 0.062 283.000 0.000 NA   NA
 4587950 4587951 YPE_1608 YPE_1609     FALSE 0.022 491.000 0.000 NA   NA
 4587951 4587952 YPE_1609 YPE_1610     FALSE 0.336 89.000 0.045 NA   NA
 4587952 4587953 YPE_1610 YPE_1611     FALSE 0.058 291.000 0.000 NA   NA
 4587954 4587955 YPE_1612 YPE_1614     FALSE 0.053 301.000 0.000 NA   NA
 4587955 4587957 YPE_1614 YPE_1615     TRUE 0.601 34.000 0.000 NA   NA
 4587958 4587959 YPE_1616 YPE_1617     FALSE 0.006 920.000 0.000 1.000 N NA
 4587959 4587960 YPE_1617 YPE_1618     TRUE 0.501 120.000 0.125 NA   NA
 4587960 4587961 YPE_1618 YPE_1619     FALSE 0.064 276.000 0.000 NA   NA
 4587963 4587964 YPE_1621 YPE_1622     TRUE 0.973 -7.000 0.182 1.000 N NA
 4587964 4587965 YPE_1622 YPE_1623     FALSE 0.354 187.000 0.158 1.000 N NA
 4587965 4587966 YPE_1623 YPE_1624     TRUE 0.783 58.000 0.180 NA   NA
 4587966 4587967 YPE_1624 YPE_1625   purB TRUE 0.613 61.000 0.093 NA   NA
 4587967 4587968 YPE_1625 YPE_1626 purB   FALSE 0.129 188.000 0.002 1.000   NA
 4587968 4587969 YPE_1626 YPE_1627   phoP FALSE 0.139 211.000 0.000 1.000   NA
 4587969 4587970 YPE_1627 YPE_1628 phoP phoQ TRUE 0.999 6.000 0.940 1.000 Y NA
 4587970 4587971 YPE_1628 YPE_1629 phoQ   TRUE 0.851 84.000 0.408 NA   NA
 4587972 4587973 YPE_1630 YPE_1631 pepT   FALSE 0.011 330.000 0.019 1.000 N NA
 4587973 4587974 YPE_1631 YPE_4354   nagK TRUE 0.498 49.000 0.000 NA   NA
 4587974 4587976 YPE_4354 YPE_1633 nagK lolE TRUE 0.727 19.000 0.000 NA   NA
 4587976 4587977 YPE_1633 YPE_1634 lolE lolD TRUE 0.979 -3.000 0.125 0.077 N NA
 4587977 4587978 YPE_1634 YPE_1635 lolD lolC TRUE 0.982 -7.000 0.175 0.077 N NA
 4587981 4587982 YPE_1638 YPE_1639     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4587983 4587984 YPE_1640 YPE_1641   moeB FALSE 0.108 136.000 0.000 1.000 N NA
 4587984 4587985 YPE_1641 YPE_1642 moeB moeA TRUE 0.998 5.000 0.323 0.003 Y NA
 4587985 4587986 YPE_1642 YPE_1643 moeA   FALSE 0.021 535.000 0.000 1.000   NA
 4587986 4587987 YPE_1643 YPE_1644     TRUE 0.914 10.000 0.094 1.000   NA
 4587987 4587988 YPE_1644 YPE_1645     TRUE 0.930 2.000 0.094 1.000 N NA
 4587988 4587989 YPE_1645 YPE_1646     TRUE 0.994 2.000 0.500 NA   NA
 4587989 4587990 YPE_1646 YPE_1647     FALSE 0.309 84.000 0.000 NA   NA
 4587990 4587991 YPE_1647 YPE_1648     FALSE 0.075 257.000 0.000 NA   NA
 4587991 4587992 YPE_1648 YPE_1649   frmA TRUE 0.950 21.000 0.273 1.000   NA
 4587992 4587993 YPE_1649 YPE_1650 frmA   TRUE 0.553 280.000 0.636 1.000 N NA
 4587994 4587995 YPE_1651 YPE_1652   folE TRUE 0.598 184.000 0.250 NA   NA
 4587995 4587996 YPE_1652 YPE_1653 folE   TRUE 0.963 55.000 0.719 NA   NA
 4587996 4587997 YPE_1653 YPE_1654   mglB FALSE 0.015 748.000 0.000 NA   NA
 4587997 4587998 YPE_1654 YPE_1655 mglB mglA TRUE 0.748 230.000 0.250 NA Y NA
 4587998 4587999 YPE_1655 YPE_1656 mglA mglC TRUE 0.998 21.000 0.905 0.013 Y NA
 4588000 4588001 YPE_1657 YPE_1658   sfcA FALSE 0.072 281.000 0.045 NA   NA
 4588001 4588002 YPE_1658 YPE_1659 sfcA cdd FALSE 0.010 356.000 0.022 1.000 N NA
 4588002 4588003 YPE_1659 YPE_1660 cdd   FALSE 0.142 326.000 0.198 1.000 N NA
 4588003 4588004 YPE_1660 YPE_1661     TRUE 0.993 -3.000 0.340 1.000   NA
 4588004 4588005 YPE_1661 YPE_1662   ydeF FALSE 0.167 242.000 0.021 0.074   NA
 4588005 4588006 YPE_1662 YPE_1663 ydeF   FALSE 0.043 333.000 0.000 NA   NA
 4588006 4588007 YPE_1663 YPE_1664     TRUE 0.935 15.000 0.177 NA   NA
 4588009 4588010 YPE_1666 YPE_1667     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4588013 4588014 YPE_1670 YPE_1671   udk FALSE 0.087 245.000 0.073 1.000 N NA
 4588014 4588015 YPE_1671 YPE_1672 udk dcd TRUE 0.807 105.000 0.098 1.000 Y NA
 4588015 4588016 YPE_1672 YPE_1673 dcd   FALSE 0.121 187.000 0.057 NA N NA
 4588018 4588019 YPE_1675 YPE_1676     FALSE 0.223 152.000 0.000 NA   NA
 4588019 4588020 YPE_1676 YPE_1677   alcA TRUE 0.966 35.000 0.667 1.000 N NA
 4588020 4588021 YPE_1677 YPE_1678 alcA alcB TRUE 0.801 0.000 0.000 NA N NA
 4588021 4588022 YPE_1678 YPE_1679 alcB   TRUE 0.823 -3.000 0.000 NA N NA
 4588023 4588024 YPE_1680 YPE_1681 ysuD   TRUE 0.999 -3.000 0.583 1.000 Y NA
 4588024 4588025 YPE_1681 YPE_1682   ysuB TRUE 0.999 -13.000 0.818 0.061 Y NA
 4588025 4588026 YPE_1682 YPE_1683 ysuB   TRUE 0.999 -3.000 0.455 1.000 Y NA
 4588026 4588027 YPE_1683 YPE_1684     TRUE 0.945 90.000 0.364 1.000 Y NA
 4588027 4588028 YPE_1684 YPE_1685     TRUE 0.755 213.000 0.455 0.002 N NA
 4588029 4588030 YPE_1686 YPE_1687 galU galF TRUE 0.918 84.000 0.111 0.001 Y NA
 4588030 4588031 YPE_1687 YPE_1688 galF gnd FALSE 0.013 386.000 0.000 1.000 N NA
 4588032 4588033 YPE_1689 YPE_1690 hisI hisF TRUE 0.999 -6.000 0.430 0.003 Y NA
 4588033 4588034 YPE_1690 YPE_1691 hisF hisA TRUE 0.999 -18.000 0.433 0.003 Y NA
 4588034 4588035 YPE_1691 YPE_1692 hisA hisH TRUE 0.996 6.000 0.210 0.003 Y NA
 4588035 4588036 YPE_1692 YPE_1693 hisH hisB TRUE 0.997 0.000 0.128 0.003 Y NA
 4588036 4588037 YPE_1693 YPE_1694 hisB hisC TRUE 0.999 -3.000 0.341 0.003 Y NA
 4588037 4588038 YPE_1694 YPE_1695 hisC hisD TRUE 0.998 3.000 0.294 0.003 Y NA
 4588038 4588039 YPE_1695 YPE_1696 hisD hisG TRUE 0.996 4.000 0.171 0.003 Y NA
 4588040 4588041 YPE_1697 YPE_1698     FALSE 0.031 392.000 0.000 NA   NA
 4588042 4588043 YPE_1699 YPE_1700     FALSE 0.088 245.000 0.000 NA   NA
 4588043 4588044 YPE_1700 YPE_1701     TRUE 0.934 -3.000 0.000 NA   NA
 4588046 4588047 YPE_1703 YPE_1704   yeeF FALSE 0.010 460.000 0.000 1.000 N NA
 11431540 4588040   YPE_1697     FALSE NA 8308.000 0.000 NA   NA
 11573903 4588040   YPE_1697     FALSE NA 8308.000 0.000 NA   NA
 11716295 4588040   YPE_1697     FALSE NA 8308.000 0.000 NA   NA
 11431541 4588040   YPE_1697     FALSE NA 8336.000 0.000 NA   NA
 11573904 4588040   YPE_1697     FALSE NA 8336.000 0.000 NA   NA
 11716296 4588040   YPE_1697     FALSE NA 8336.000 0.000 NA   NA
 11431542 4588040   YPE_1697     FALSE NA 8368.000 0.000 NA   NA
 11573905 4588040   YPE_1697     FALSE NA 8368.000 0.000 NA   NA
 11716297 4588040   YPE_1697     FALSE NA 8368.000 0.000 NA   NA
 11431543 4588040   YPE_1697     FALSE NA 8396.000 0.000 NA   NA
 11573906 4588040   YPE_1697     FALSE NA 8396.000 0.000 NA   NA
 11716298 4588040   YPE_1697     FALSE NA 8396.000 0.000 NA   NA
 11431544 4588040   YPE_1697     FALSE NA 8428.000 0.000 NA   NA
 11573907 4588040   YPE_1697     FALSE NA 8428.000 0.000 NA   NA
 11716299 4588040   YPE_1697     FALSE NA 8428.000 0.000 NA   NA
 11431545 4588040   YPE_1697     FALSE NA 8456.000 0.000 NA   NA
 11573908 4588040   YPE_1697     FALSE NA 8456.000 0.000 NA   NA
 11716300 4588040   YPE_1697     FALSE NA 8456.000 0.000 NA   NA
 11431546 4588040   YPE_1697     FALSE NA 8488.000 0.000 NA   NA
 11573909 4588040   YPE_1697     FALSE NA 8488.000 0.000 NA   NA
 11716301 4588040   YPE_1697     FALSE NA 8488.000 0.000 NA   NA
 4588049 4588050 YPE_1706 YPE_1707     FALSE 0.026 434.000 0.000 NA   NA
 4588053 4588054 YPE_1709 YPE_1711     FALSE 0.005 4044.000 0.000 1.000 N NA
 4588056 4588057 YPE_1713 YPE_1714     TRUE 0.983 48.000 0.333 0.044 Y NA
 4588057 4588058 YPE_1714 YPE_1715     TRUE 0.780 107.000 0.290 0.044 N NA
 4588058 4588059 YPE_1715 YPE_1716     FALSE 0.321 79.000 0.000 NA   NA
 4588059 4588060 YPE_1716 YPE_1717   lldD TRUE 0.520 45.000 0.000 NA   NA
 4588063 4588064 YPE_1720 YPE_1721     TRUE 0.753 36.000 0.136 1.000 N NA
 4588065 4588066 YPE_1722 YPE_1723     FALSE 0.257 117.000 0.000 NA   NA
 4588067 4588068 YPE_1724 YPE_1725     FALSE 0.025 446.000 0.000 NA   NA
 4588068 4588069 YPE_1725 YPE_1726     FALSE 0.031 258.000 0.000 1.000 N NA
 4588069 4588070 YPE_1726 YPE_1727     TRUE 0.997 20.000 0.905 NA Y NA
 4588070 4588071 YPE_1727 YPE_1728     TRUE 0.981 124.000 0.947 NA Y NA
 4588078 4588079 YPE_1735 YPE_1736 dinI pyrC FALSE 0.046 313.000 0.031 NA   NA
 4588081 4588082 YPE_1738 YPE_1739   rne FALSE 0.136 96.000 0.000 1.000 N NA
 4588083 4588084 YPE_1740 YPE_1741 rluC tnp FALSE 0.050 220.000 0.000 1.000 N NA
 4588086 4588087 YPE_1743 YPE_1744 yceD rpmF TRUE 0.988 13.000 0.599 NA   NA
 4588087 4588088 YPE_1744 YPE_1745 rpmF   TRUE 0.937 34.000 0.418 1.000 N NA
 4588088 4588089 YPE_1745 YPE_1746   fabH TRUE 0.998 7.000 0.380 0.003 Y NA
 4588089 4588090 YPE_1746 YPE_1747 fabH fabD TRUE 0.978 38.000 0.182 0.003 Y NA
 4588090 4588091 YPE_1747 YPE_1748 fabD fabG TRUE 0.997 14.000 0.432 0.003 Y NA
 4588091 4588092 YPE_1748 YPE_1749 fabG acpP TRUE 0.946 154.000 0.321 0.003 Y NA
 4588092 4588093 YPE_1749 YPE_1750 acpP fabF TRUE 0.940 95.000 0.346 1.000 Y NA
 4588093 4588094 YPE_1750 YPE_1751 fabF tnp FALSE 0.065 200.000 0.000 1.000 N NA
 4588094 4588095 YPE_1751 YPE_1752 tnp pabC FALSE 0.011 416.000 0.000 1.000 N NA
 4588095 4588096 YPE_1752 YPE_1753 pabC yceG FALSE 0.252 289.000 0.204 1.000   NA
 4588096 4588097 YPE_1753 YPE_1754 yceG tmk TRUE 0.992 -10.000 0.209 0.001   NA
 4588097 4588098 YPE_1754 YPE_1755 tmk holB TRUE 0.979 0.000 0.211 1.000 N NA
 4588098 4588099 YPE_1755 YPE_1756 holB   TRUE 0.975 15.000 0.110 NA Y NA
 4588099 4588100 YPE_1756 YPE_1757   ptsG FALSE 0.005 306.000 0.004 NA N NA
 4588100 4588101 YPE_1757 YPE_1758 ptsG tnp FALSE 0.073 190.000 0.000 1.000 N NA
 4588101 4588102 YPE_1758 YPE_1759 tnp   FALSE 0.013 383.000 0.000 1.000 N NA
 4588102 4588103 YPE_1759 YPE_1760     FALSE 0.031 174.000 0.003 1.000 N NA
 4588103 4588104 YPE_1760 YPE_1761     TRUE 0.654 35.000 0.051 NA   NA
 4588104 4588105 YPE_1761 YPE_1762     TRUE 0.955 41.000 0.516 NA   NA
 4588105 4588106 YPE_1762 YPE_1763   thiK TRUE 0.913 41.000 0.310 NA   NA
 4588106 4588107 YPE_1763 YPE_1764 thiK   FALSE 0.331 71.000 0.069 1.000 N NA
 4588107 4588108 YPE_1764 YPE_1765     TRUE 0.409 128.000 0.091 NA   NA
 4588108 4588109 YPE_1765 YPE_1766   ndh FALSE 0.048 375.000 0.057 NA   NA
 4588109 4588110 YPE_1766 YPE_1767 ndh   FALSE 0.201 171.000 0.000 NA   NA
 4588110 4588111 YPE_1767 YPE_1768     FALSE 0.197 173.000 0.000 NA   NA
 4588111 4588112 YPE_1768 YPE_1769     TRUE 0.837 8.000 0.000 NA   NA
 4588112 4588113 YPE_1769 YPE_1770     FALSE 0.287 96.000 0.000 NA   NA
 4588114 4588115 YPE_1771 YPE_1772     FALSE 0.107 228.000 0.000 NA   NA
 4588117 4588118 YPE_1774 YPE_1775     TRUE 0.676 25.000 0.000 NA   NA
 4588118 4588119 YPE_1775 YPE_1776     TRUE 0.924 0.000 0.000 NA   NA
 4588119 4588120 YPE_1776 YPE_1777     TRUE 0.950 68.000 0.750 NA   NA
 4588120 4588121 YPE_1777 YPE_1778     TRUE 0.996 -36.000 0.750 NA   NA
 4588121 4588122 YPE_1778 YPE_1779     FALSE 0.117 221.000 0.000 NA   NA
 4588122 4588123 YPE_1779 YPE_1780     TRUE 0.990 0.000 0.286 NA   NA
 4588123 4588124 YPE_1780 YPE_1781     TRUE 0.918 -9.000 0.040 NA   NA
 4588124 4588125 YPE_1781 YPE_1782     TRUE 0.754 44.000 0.120 NA   NA
 4588125 4588126 YPE_1782 YPE_1783     TRUE 0.997 -3.000 0.625 NA   NA
 4588126 4588127 YPE_1783 YPE_1784     FALSE 0.013 2276.000 0.000 NA   NA
 4588127 4588128 YPE_1784 YPE_1785     TRUE 0.806 173.000 0.500 NA   NA
 4588128 4588129 YPE_1785 YPE_1786     TRUE 0.752 16.000 0.000 NA   NA
 4588129 4588130 YPE_1786 YPE_1787     FALSE 0.221 154.000 0.000 NA   NA
 4588130 4588131 YPE_1787 YPE_1788     TRUE 0.934 -3.000 0.000 NA   NA
 4588131 4588132 YPE_1788 YPE_1789     TRUE 0.974 16.000 0.400 NA   NA
 4588132 4588133 YPE_1789 YPE_1790     TRUE 0.964 3.000 0.125 NA   NA
 4588133 4588134 YPE_1790 YPE_1791     FALSE 0.059 388.000 0.083 NA   NA
 4588134 4588135 YPE_1791 YPE_1792     TRUE 0.882 4.000 0.000 NA   NA
 4588135 4588136 YPE_1792 YPE_1793     TRUE 0.924 0.000 0.000 NA   NA
 4588136 4588137 YPE_1793 YPE_1794     TRUE 0.998 -3.000 0.750 NA   NA
 4588137 4588138 YPE_1794 YPE_1795     TRUE 0.800 12.000 0.000 NA   NA
 4588138 4588139 YPE_1795 YPE_1796     TRUE 0.533 43.000 0.000 NA   NA
 4588139 4588140 YPE_1796 YPE_1797     FALSE 0.016 665.000 0.000 NA   NA
 4588140 4588141 YPE_1797 YPE_1798     FALSE 0.218 157.000 0.000 NA   NA
 4588141 4588142 YPE_1798 YPE_1799     FALSE 0.297 99.000 0.000 1.000   NA
 4588142 4588143 YPE_1799 YPE_1800     TRUE 0.568 38.000 0.000 NA   NA
 4588143 4588144 YPE_1800 YPE_1801     TRUE 0.560 39.000 0.000 NA   NA
 4588144 4588145 YPE_1801 YPE_1802     TRUE 0.992 3.000 0.051 0.043 Y NA
 4588145 4588146 YPE_1802 YPE_1803     TRUE 0.996 -7.000 0.120 0.016 Y NA
 4588146 4588147 YPE_1803 YPE_1804     TRUE 0.993 -7.000 0.120 1.000 Y NA
 4588147 4588148 YPE_1804 YPE_1805     TRUE 0.991 16.000 0.333 1.000 Y NA
 4588148 4588149 YPE_1805 YPE_1806     TRUE 0.990 -7.000 0.056 1.000 Y NA
 4588149 4588150 YPE_1806 YPE_1807     TRUE 0.990 -10.000 0.083 NA Y NA
 4588150 4588151 YPE_1807 YPE_1808     FALSE 0.044 330.000 0.000 NA   NA
 4588152 4588153 YPE_1809 YPE_1810     FALSE 0.299 154.000 0.000 0.019 N NA
 4588157 4588158 YPE_1814 YPE_1815     TRUE 0.616 61.000 0.094 NA   NA
 4588160 4588161 YPE_1817 YPE_1818   mgsA FALSE 0.240 179.000 0.055 NA   NA
 4588163 4588164 YPE_1820 YPE_1821     TRUE 0.784 30.000 0.090 NA   NA
 4588166 4588167 YPE_1823 YPE_1824 sulA ompA FALSE 0.015 358.000 0.000 1.000 N NA
 4588167 4588168 YPE_1824 YPE_1825 ompA tnp FALSE 0.073 190.000 0.000 1.000 N NA
 4588170 4588171 YPE_1827 YPE_1828   fabA TRUE 0.770 69.000 0.290 1.000 N NA
 4588173 4588175 YPE_1830N YPE_1831     FALSE 0.304 87.000 0.000 NA   NA
 4588175 4588176 YPE_1831 YPE_1832     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4588179 4588180 YPE_1833 YPE_1834     FALSE 0.041 341.000 0.000 NA   NA
 4588180 4588181 YPE_1834 YPE_1835     FALSE 0.014 367.000 0.000 1.000 N NA
 4588181 4588182 YPE_1835 YPE_1836     TRUE 0.674 151.000 0.000 1.000 Y NA
 4588182 4588183 YPE_1836 YPE_1837     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4588183 4588184 YPE_1837 YPE_1838     TRUE 0.939 -3.000 0.000 1.000   NA
 4588184 4588185 YPE_1838 YPE_1839     TRUE 0.990 -7.000 0.312 NA   NA
 4588185 4588186 YPE_1839 YPE_1840     TRUE 0.976 -3.000 0.125 NA   NA
 4588187 4588188 YPE_1841 YPE_1842 artM artQ TRUE 0.999 0.000 0.714 0.017 Y NA
 4588188 4588189 YPE_1842 YPE_1843 artQ artI TRUE 0.994 12.000 0.260 0.075 Y NA
 4588189 4588190 YPE_1843 YPE_1844 artI artP TRUE 0.988 21.000 0.323 1.000 Y NA
 4588190 4588191 YPE_1844 YPE_1845 artP   FALSE 0.298 295.000 0.000 1.000 Y NA
 4588191 4588192 YPE_1845 YPE_1846     FALSE 0.166 170.000 0.018 NA   NA
 4588192 4588193 YPE_1846 YPE_1847     TRUE 0.660 78.000 0.167 NA   NA
 4588193 4588194 YPE_1847 YPE_1848     TRUE 0.831 100.000 0.022 0.003 Y NA
 4588194 4588195 YPE_1848 YPE_1849   ltaA TRUE 0.933 -3.000 0.074 1.000 N NA
 4588195 4588196 YPE_1849 YPE_1850 ltaA poxB FALSE 0.225 349.000 0.031 1.000 Y NA
 4588196 4588197 YPE_1850 YPE_1851 poxB hcr FALSE 0.059 144.000 0.017 1.000 N NA
 4588197 4588198 YPE_1851 YPE_1852 hcr hcp TRUE 0.862 114.000 0.085 0.011 Y NA
 4588198 4588199 YPE_1852 YPE_1853 hcp   FALSE 0.135 202.000 0.028 NA   NA
 4588202 4588203 YPE_1856 YPE_1857   macB TRUE 0.998 0.000 0.789 0.095 N NA
 4588205 4588206 YPE_1859 YPE_1860   clpA TRUE 0.977 26.000 0.596 NA   NA
 4588206 4588207 YPE_1860 YPE_1861 clpA tnp FALSE 0.023 293.000 0.000 1.000 N NA
 4588208 4588209 YPE_1862 YPE_1863 infA aat FALSE 0.060 166.000 0.020 1.000 N NA
 4588209 4588210 YPE_1863 YPE_1864 aat cydC TRUE 0.524 219.000 0.049 1.000 Y NA
 4588210 4588211 YPE_1864 YPE_1865 cydC cydD TRUE 0.999 3.000 0.631 0.005 Y NA
 4588211 4588212 YPE_1865 YPE_1866 cydD trxB FALSE 0.167 459.000 0.049 1.000 Y NA
 4588213 4588214 YPE_1867 YPE_1868 lrp ftsK TRUE 0.721 123.000 0.345 1.000 N NA
 4588214 4588215 YPE_1868 YPE_1869 ftsK lolA TRUE 0.552 193.000 0.305 1.000 N NA
 4588215 4588216 YPE_1869 YPE_1870 lolA   TRUE 0.924 11.000 0.167 1.000 N NA
 4588216 4588217 YPE_1870 YPE_1871   serS FALSE 0.097 242.000 0.078 1.000 N NA
 4588217 4588218 YPE_1871 YPE_1872 serS   FALSE 0.027 271.000 0.000 1.000 N NA
 4588221 4588222 YPE_1875 YPE_1876 pflB focA TRUE 0.712 56.000 0.172 1.000 N NA
 4588222 4588223 YPE_1876 YPE_1877 focA   FALSE 0.016 697.000 0.000 NA   NA
 4588224 4588225 YPE_1878 YPE_1879 ansB   FALSE 0.073 269.000 0.000 1.000   NA
 4588225 4588226 YPE_1879 YPE_1880     TRUE 0.924 0.000 0.000 NA   NA
 4588226 4588227 YPE_1880 YPE_1881   serC FALSE 0.036 367.000 0.000 NA   NA
 4588227 4588228 YPE_1881 YPE_1882 serC aroA TRUE 0.655 163.000 0.033 1.000 Y NA
 4588228 4588229 YPE_1882 YPE_1883 aroA cmk FALSE 0.160 313.000 0.209 1.000 N NA
 4588229 4588230 YPE_1883 YPE_1884 cmk rpsA TRUE 0.576 174.000 0.281 1.000 N NA
 4588230 4588231 YPE_1884 YPE_1885 rpsA ihfB TRUE 0.815 61.000 0.292 1.000 N NA
 4588231 4588232 YPE_1885 YPE_1886 ihfB   FALSE 0.014 547.000 0.003 1.000   NA
 4588232 4588233 YPE_1886 YPE_1887   msbA TRUE 0.829 36.000 0.075 0.072   NA
 4588233 4588234 YPE_1887 YPE_1888 msbA lpxK TRUE 0.981 -3.000 0.205 1.000 N NA
 4588236 4588237 YPE_1890 YPE_1891 cspB   FALSE 0.013 548.000 0.004 NA   NA
 4588237 4588238 YPE_1891 YPE_1892   kdsB TRUE 0.990 -3.000 0.265 NA   NA
 4588238 4588239 YPE_1892 YPE_1893 kdsB   FALSE 0.031 363.000 0.023 NA   NA
 4588239 4588240 YPE_1893 YPE_1894   smtA FALSE 0.015 773.000 0.000 NA   NA
 4588240 4588241 YPE_1894 YPE_1895 smtA mukF TRUE 0.990 -3.000 0.325 NA N NA
 4588241 4588242 YPE_1895 YPE_1896 mukF mukE TRUE 0.990 8.000 0.196 NA Y NA
 4588242 4588243 YPE_1896 YPE_1897 mukE mukB TRUE 1.000 -3.000 0.786 0.001 Y NA
 4588243 4588244 YPE_1897 YPE_1898 mukB tnp FALSE 0.148 216.000 0.000 0.082 N NA
 4588244 4588245 YPE_1898 YPE_1899 tnp   FALSE 0.066 284.000 0.000 1.000   NA
 4588245 4588246 YPE_1899 YPE_1900     TRUE 0.584 224.000 0.372 NA   NA
 4588246 4588247 YPE_1900 YPE_1901     TRUE 0.607 61.000 0.089 NA   NA
 4588248 4588249 YPE_1902 YPE_1903 aspC ompF FALSE 0.031 257.000 0.000 1.000 N NA
 4588249 4588250 YPE_1903 YPE_1904 ompF asnS FALSE 0.022 298.000 0.000 1.000 N NA
 4588250 4588251 YPE_1904 YPE_1905 asnS pncB FALSE 0.008 499.000 0.034 1.000 N NA
 4588252 4588253 YPE_1906 YPE_1907 pepN pyrD FALSE 0.003 618.000 0.014 1.000 N NA
 4588253 4588254 YPE_1907 YPE_1908 pyrD   FALSE 0.297 183.000 0.081 NA   NA
 4588256 4588257 YPE_1910 YPE_1911   uup TRUE 0.903 6.000 0.061 1.000   NA
 4588257 4588258 YPE_1911 YPE_1912 uup pqiA FALSE 0.308 129.000 0.054 NA   NA
 4588258 4588259 YPE_1912 YPE_1913 pqiA pqiB TRUE 0.992 14.000 0.819 NA   NA
 4588259 4588260 YPE_1913 YPE_1914 pqiB   TRUE 0.996 -3.000 0.531 NA   NA
 4588260 4588261 YPE_1914 YPE_1915     TRUE 0.498 49.000 0.000 NA   NA
 4588261 4588262 YPE_1915 YPE_1916   rmf FALSE 0.317 81.000 0.000 NA   NA
 4588262 4588263 YPE_1916 YPE_1917 rmf tnp FALSE 0.057 198.000 0.000 NA N NA
 4588264 4588266 YPE_1830C YPE_1918     FALSE 0.346 72.000 0.000 NA   NA
 4588266 4588267 YPE_1918 YPE_1919     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4588270 4588271 YPE_1921 YPE_1922     TRUE 0.550 84.000 0.119 NA   NA
 4588271 4588272 YPE_1922 YPE_1923   potI TRUE 0.708 125.000 0.264 NA   NA
 4588272 4588273 YPE_1923 YPE_1924 potI potH TRUE 0.999 -3.000 0.528 0.059 Y NA
 4588273 4588274 YPE_1924 YPE_1925 potH potG TRUE 0.997 25.000 0.857 1.000 Y NA
 4588274 4588275 YPE_1925 YPE_1926 potG potF TRUE 0.960 171.000 0.679 1.000 Y NA
 4588275 4588276 YPE_1926 YPE_1927 potF   FALSE 0.021 518.000 0.000 NA   NA
 4588276 4588277 YPE_1927 YPE_1928     TRUE 0.844 7.000 0.000 NA   NA
 4588277 4588278 YPE_1928 YPE_1929     TRUE 0.752 16.000 0.000 NA   NA
 4588279 4588280 YPE_1930 YPE_1931 grxA   FALSE 0.031 410.000 0.000 1.000   NA
 4588280 4588281 YPE_1931 YPE_1932   rybB FALSE 0.294 93.000 0.000 NA   NA
 4588281 4588282 YPE_1932 YPE_1933 rybB   FALSE 0.215 160.000 0.000 NA   NA
 4588282 4588283 YPE_1933 YPE_1934   ybjG TRUE 0.954 9.000 0.106 0.094   NA
 4588283 4588284 YPE_1934 YPE_1935 ybjG   FALSE 0.080 258.000 0.000 1.000   NA
 4588284 4588285 YPE_1935 YPE_1936   deoR FALSE 0.038 230.000 0.030 1.000 N NA
 4588285 4588286 YPE_1936 YPE_1937 deoR sdaC FALSE 0.005 1100.000 0.000 1.000 N NA
 4588287 4588288 YPE_1938 YPE_1939 dacC   FALSE 0.038 242.000 0.000 1.000 N NA
 4588288 4588289 YPE_1939 YPE_1940     TRUE 0.994 -3.000 0.096 1.000 Y NA
 4588289 4588290 YPE_1940 YPE_1941     TRUE 0.998 -3.000 0.323 NA Y NA
 4588290 4588291 YPE_1941 YPE_1942     FALSE 0.340 228.000 0.174 NA   NA
 4588292 4588293 YPE_1943 YPE_1944     FALSE 0.165 154.000 0.056 1.000 N NA
 4588294 4588295 YPE_1945 YPE_1946   yiuC FALSE 0.362 260.000 0.000 1.000 Y NA
 4588295 4588296 YPE_1946 YPE_1947 yiuC yiuB TRUE 0.999 -3.000 0.833 1.000 Y NA
 4588296 4588297 YPE_1947 YPE_1948 yiuB yiuA TRUE 0.777 195.000 0.175 1.000 Y NA
 4588297 4588298 YPE_1948 YPE_1949 yiuA lysP FALSE 0.025 286.000 0.000 1.000 N NA
 4588298 4588299 YPE_1949 YPE_1950 lysP   FALSE 0.252 258.000 0.222 1.000 N NA
 4588300 4588301 YPE_1951 YPE_1952   nfo FALSE 0.240 164.000 0.040 1.000   NA
 4588302 4588303 YPE_1953 YPE_1954 psaC psaB TRUE 0.893 42.000 0.000 1.000 Y NA
 4588303 4588304 YPE_1954 YPE_1955 psaB psaA TRUE 0.801 127.000 0.400 NA   NA
 4588304 4588305 YPE_1955 YPE_1956 psaA psaF FALSE 0.019 545.000 0.000 NA   NA
 4588305 4588306 YPE_1956 YPE_1957 psaF psaE TRUE 0.999 -3.000 1.000 NA   NA
 4588306 4588307 YPE_1957 YPE_1958 psaE fruA FALSE 0.018 325.000 0.000 1.000 N NA
 4588307 4588308 YPE_1958 YPE_1959 fruA fruK TRUE 0.996 15.000 0.562 1.000 Y NA
 4588308 4588309 YPE_1959 YPE_1960 fruK fruB TRUE 0.994 -3.000 0.112 1.000 Y NA
 4588311 4588312 YPE_1962 YPE_1963     TRUE 0.989 36.000 0.375 0.013 Y NA
 4588312 4588313 YPE_1963 YPE_1964     TRUE 0.935 109.000 0.375 NA Y NA
 4588313 4588314 YPE_1964 YPE_1965     TRUE 0.676 140.000 0.000 NA Y NA
 4588314 4588315 YPE_1965 YPE_1966     TRUE 0.948 20.000 0.000 1.000 Y NA
 4588315 4588316 YPE_1966 YPE_1967     TRUE 0.863 4.000 0.065 1.000 N NA
 4588317 4588318 YPE_1968 YPE_1969   serA1 TRUE 0.968 -3.000 0.017 0.043   NA
 4588318 4588319 YPE_1969 YPE_1970 serA1   TRUE 0.861 11.000 0.000 0.043 N NA
 4588321 4588322 YPE_1972 YPE_1973 mtr   TRUE 0.478 104.000 0.153 1.000 N NA
 4588325 4588326 YPE_1976 YPE_1977     TRUE 0.644 109.000 0.200 NA   NA
 4588327 4588328 YPE_1978 YPE_1979     TRUE 0.855 59.000 0.275 NA   NA
 4588328 4588329 YPE_1979 YPE_1980   spr FALSE 0.026 442.000 0.000 NA   NA
 4588329 4588330 YPE_1980 YPE_1982 spr   FALSE 0.004 2250.000 0.000 NA N NA
 4588330 4588331 YPE_1982 YPE_1983     TRUE 0.997 10.000 0.848 0.059   NA
 4588331 4588332 YPE_1983 YPE_1984     TRUE 0.999 0.000 0.833 0.059   NA
 4588332 4588333 YPE_1984 YPE_1985     TRUE 0.997 2.000 0.758 1.000   NA
 4588334 4588335 YPE_1986 YPE_1987   bcr FALSE 0.014 967.000 0.000 NA   NA
 4588335 4588336 YPE_1987 YPE_1988 bcr rsuA TRUE 0.444 119.000 0.145 1.000 N NA
 4588337 4588338 YPE_1989 YPE_1990   rplY FALSE 0.282 162.000 0.024 0.012 N NA
 4588339 4588340 YPE_1991 YPE_1992 tnp   FALSE 0.149 201.000 0.000 NA   NA
 4588341 4588342 YPE_1993 YPE_1994     TRUE 0.669 28.000 0.040 NA   NA
 4588342 4588343 YPE_1994 YPE_1995     FALSE 0.268 105.000 0.000 NA   NA
 4588343 4588344 YPE_1995 YPE_1996     TRUE 0.490 50.000 0.000 NA   NA
 4588344 4588346 YPE_1996 YPE_1997     FALSE 0.037 357.000 0.000 NA   NA
 4588346 4588347 YPE_1997 YPE_1998     TRUE 0.789 13.000 0.000 NA   NA
 4588347 4588348 YPE_1998 YPE_1999     FALSE 0.016 700.000 0.000 NA   NA
 4588349 4588350 YPE_2000 YPE_2001 bglA   FALSE 0.086 291.000 0.000 0.016 N NA
 4588350 4588351 YPE_2001 YPE_2002   stf FALSE 0.054 298.000 0.000 NA   NA
 4588351 4588352 YPE_2002 YPE_2003 stf   FALSE 0.285 97.000 0.000 NA   NA
 4588352 4588353 YPE_2003 YPE_2004     TRUE 0.934 -3.000 0.000 NA   NA
 4588353 4588354 YPE_2004 YPE_2005     TRUE 0.996 -3.000 0.500 NA   NA
 4588354 4588355 YPE_2005 YPE_2006     TRUE 0.997 4.000 1.000 NA   NA
 4588355 4588356 YPE_2006 YPE_2007     TRUE 0.999 -3.000 1.000 NA   NA
 4588356 4588357 YPE_2007 YPE_2008     TRUE 0.994 16.000 1.000 NA   NA
 4588357 4588358 YPE_2008 YPE_2009     TRUE 0.962 -3.000 0.074 NA   NA
 4588358 4588359 YPE_2009 YPE_2010     FALSE 0.116 267.000 0.074 NA   NA
 4588359 4588360 YPE_2010 YPE_2011     TRUE 0.899 121.000 0.667 NA   NA
 4588360 4588361 YPE_2011 YPE_2012     TRUE 0.998 2.000 1.000 NA   NA
 4588361 4588362 YPE_2012 YPE_2013     TRUE 0.992 22.000 1.000 NA   NA
 4588362 4588363 YPE_2013 YPE_2014     TRUE 0.996 -3.000 0.500 NA   NA
 4588363 4588364 YPE_2014 YPE_2015     TRUE 0.991 5.000 0.500 NA   NA
 4588364 4588365 YPE_2015 YPE_2016     TRUE 0.515 46.000 0.000 NA   NA
 4588365 4588366 YPE_2016 YPE_2017     FALSE 0.017 614.000 0.000 NA   NA
 4588366 4588367 YPE_2017 YPE_2018     TRUE 0.992 18.000 0.400 1.000 Y NA
 4588367 4588368 YPE_2018 YPE_2019     FALSE 0.016 706.000 0.000 NA   NA
 4588368 4588369 YPE_2019 YPE_2020     FALSE 0.146 202.000 0.000 NA   NA
 4588370 4588371 YPE_2021 YPE_2022   msgA FALSE 0.146 206.000 0.000 1.000   NA
 4588371 4588372 YPE_2022 YPE_2023 msgA pla2 FALSE 0.212 172.000 0.000 1.000   NA
 4588372 4588373 YPE_2023 YPE_2024 pla2 tsr2 FALSE 0.011 422.000 0.000 1.000 N NA
 4588375 4588376 YPE_2026 YPE_2027   ampH FALSE 0.022 275.000 0.000 NA N NA
 4588377 4588378 YPE_2028 YPE_2029     TRUE 0.854 6.000 0.000 NA   NA
 4588378 4588379 YPE_2029 YPE_2030   tnp FALSE 0.014 1145.000 0.000 NA   NA
 4588379 4588380 YPE_2030 YPE_2031 tnp ompC FALSE 0.063 202.000 0.000 1.000 N NA
 4588381 4588382 YPE_2032 YPE_2033 micF   FALSE 0.016 699.000 0.000 NA   NA
 4588382 4588383 YPE_2033 YPE_2035     TRUE 0.688 24.000 0.000 NA   NA
 4588383 4588385 YPE_2035 YPE_2036   rcsB TRUE 0.900 3.000 0.000 NA   NA
 4588386 4588387 YPE_2037 YPE_2038 rcsC gyrA FALSE 0.156 188.000 0.013 0.099 N NA
 4588388 4588389 YPE_2039 YPE_2040 ubiG nrdA FALSE 0.009 494.000 0.000 1.000 N NA
 4588389 4588390 YPE_2040 YPE_2041 nrdA nrdB TRUE 0.989 163.000 1.000 0.001 Y NA
 4588390 4588391 YPE_2041 YPE_2042 nrdB yfaE TRUE 0.747 4.000 0.034 1.000 N NA
 4588391 4588392 YPE_2042 YPE_2043 yfaE eco TRUE 0.551 35.000 0.023 NA   NA
 4588398 4588399 YPE_2049 YPE_2050 ompC2   FALSE 0.060 412.000 0.000 0.093   NA
 4588400 4588401 YPE_2051 YPE_2052     TRUE 0.944 70.000 0.286 1.000 Y NA
 4588401 4588402 YPE_2052 YPE_2053     FALSE 0.193 484.000 0.000 0.093 Y NA
 4588402 4588403 YPE_2053 YPE_2054     TRUE 0.999 -3.000 0.542 1.000 Y NA
 4588403 4588404 YPE_2054 YPE_2055     TRUE 0.999 -3.000 0.489 1.000 Y NA
 4588404 4588405 YPE_2055 YPE_2056     FALSE 0.072 261.000 0.000 NA   NA
 4588408 4588409 YPE_2059 YPE_2060     TRUE 0.688 24.000 0.000 NA   NA
 4588409 4588410 YPE_2060 YPE_2061     FALSE 0.258 115.000 0.000 NA   NA
 4588410 4588411 YPE_2061 YPE_2062     TRUE 0.954 94.000 0.731 0.019   NA
 4588411 4588412 YPE_2062 YPE_2063     TRUE 0.998 -3.000 0.823 1.000   NA
 4588412 4588413 YPE_2063 YPE_2064     TRUE 1.000 0.000 0.758 0.058 Y NA
 4588413 4588414 YPE_2064 YPE_2065     TRUE 0.967 124.000 0.654 1.000 Y NA
 4588414 4588415 YPE_2065 YPE_2066     FALSE 0.026 435.000 0.000 NA   NA
 4588415 4588416 YPE_2066 YPE_2067     FALSE 0.087 246.000 0.000 NA   NA
 4588416 4588417 YPE_2067 YPE_2068     TRUE 0.999 -3.000 0.491 0.001 Y NA
 4588417 4588418 YPE_2068 YPE_2069     TRUE 0.973 163.000 0.568 0.001 Y NA
 4588418 4588419 YPE_2069 YPE_2070     TRUE 0.995 37.000 0.589 0.002 Y NA
 4588419 4588420 YPE_2070 YPE_2071     FALSE 0.137 208.000 0.032 1.000   NA
 4588420 4588421 YPE_2071 YPE_2072     TRUE 0.511 110.000 0.125 NA   NA
 4588425 4588426 YPE_2076 YPE_2077 pbpG dusC FALSE 0.007 592.000 0.000 1.000 N NA
 4588426 4588427 YPE_2077 YPE_2078 dusC   FALSE 0.056 294.000 0.000 NA   NA
 4588427 4588428 YPE_2078 YPE_2079   tnp FALSE 0.028 415.000 0.000 NA   NA
 4588428 4588429 YPE_2079 YPE_2080 tnp xapA FALSE 0.006 929.000 0.000 1.000 N NA
 4588431 4588432 YPE_2082 YPE_2083   betT FALSE 0.043 232.000 0.000 1.000 N NA
 4588433 4588434 YPE_2084 YPE_2085 betI betB TRUE 0.900 58.000 0.459 1.000 N NA
 4588434 4588435 YPE_2085 YPE_2086 betB betA TRUE 0.977 23.000 0.634 1.000 N NA
 4588436 4588437 YPE_2087 YPE_2088 tnp   FALSE 0.108 235.000 0.000 1.000   NA
 4588437 4588438 YPE_2088 YPE_2089   moaE FALSE 0.221 143.000 0.025 1.000   NA
 4588438 4588439 YPE_2089 YPE_2090 moaE moaD TRUE 0.999 0.000 0.501 0.003 Y NA
 4588439 4588440 YPE_2090 YPE_2091 moaD moaC TRUE 0.998 -3.000 0.175 0.003 Y NA
 4588440 4588441 YPE_2091 YPE_2092 moaC moaA TRUE 0.844 101.000 0.039 0.003 Y NA
 4588443 4588444 YPE_2094 YPE_2095   uvrB FALSE 0.039 292.000 0.003 NA   NA
 4588446 4588447 YPE_2097 YPE_2098 bioD bioC TRUE 0.995 -7.000 0.054 0.002 Y NA
 4588447 4588448 YPE_2098 YPE_2099 bioC bioF TRUE 0.996 -16.000 0.133 0.002 Y NA
 4588448 4588449 YPE_2099 YPE_2100 bioF bioB TRUE 0.998 0.000 0.168 0.002 Y NA
 4588453 4588454 YPE_2104 YPE_2105 modC modB TRUE 0.999 -6.000 0.537 0.001 Y NA
 4588454 4588455 YPE_2105 YPE_2106 modB modA TRUE 0.999 0.000 0.627 0.001 Y NA
 4588455 4588456 YPE_2106 YPE_2107 modA   FALSE 0.161 235.000 0.072 NA   NA
 4588457 4588458 YPE_2108 YPE_2109 modE modF TRUE 0.414 110.000 0.028 0.099   NA
 4588458 4588459 YPE_2109 YPE_2110 modF   FALSE 0.090 217.000 0.009 NA   NA
 4588459 4588460 YPE_2110 YPE_2111   galE FALSE 0.037 360.000 0.000 NA   NA
 4588460 4588461 YPE_2111 YPE_2112 galE galT TRUE 0.927 10.000 0.053 0.001 N NA
 4588461 4588462 YPE_2112 YPE_2113 galT galK TRUE 0.996 -3.000 0.370 0.001 N NA
 4588462 4588463 YPE_2113 YPE_2115 galK galM TRUE 0.924 -6.000 0.000 NA   NA
 4588463 4588465 YPE_2115 YPE_2116 galM psiF FALSE 0.057 293.000 0.000 NA   NA
 4588465 4588466 YPE_2116 YPE_2117 psiF gpmA FALSE 0.040 347.000 0.000 NA   NA
 4588469 4588470 YPE_2119 YPE_2120     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4588470 4588471 YPE_2120 YPE_2122     FALSE 0.005 1475.000 0.000 1.000 N NA
 4588472 4588473 YPE_2123 YPE_2124 pnuC nadA TRUE 0.693 122.000 0.023 1.000 Y NA
 4588473 4588474 YPE_2124 YPE_2125 nadA   FALSE 0.035 369.000 0.000 NA   NA
 4588474 4588476 YPE_2125 YPE_2126     TRUE 0.641 29.000 0.000 NA   NA
 4588476 4588477 YPE_2126 YPE_2127     TRUE 0.649 28.000 0.000 NA   NA
 4588477 4588478 YPE_2127 YPE_2128     FALSE 0.166 191.000 0.000 NA   NA
 4588478 4588479 YPE_2128 YPE_2129   pal TRUE 0.910 10.000 0.088 1.000   NA
 4588479 4588480 YPE_2129 YPE_2130 pal tolB TRUE 0.939 51.000 0.592 1.000 N NA
 4588480 4588481 YPE_2130 YPE_2131 tolB tolA FALSE 0.156 120.000 0.051 NA N NA
 4588481 4588482 YPE_2131 YPE_2132 tolA tolR FALSE 0.352 112.000 0.114 NA N NA
 4588482 4588483 YPE_2132 YPE_2133 tolR tolQ TRUE 0.997 13.000 0.556 0.073 Y NA
 4588483 4588484 YPE_2133 YPE_2134 tolQ   TRUE 0.996 0.000 0.593 1.000   NA
 4588484 4588485 YPE_2134 YPE_2135     TRUE 0.412 132.000 0.095 NA   NA
 4588485 4588486 YPE_2135 YPE_2136   cydB TRUE 0.494 92.000 0.100 NA   NA
 4588486 4588487 YPE_2136 YPE_2137 cydB cydA TRUE 0.995 15.000 0.348 0.037 Y NA
 4588487 4588488 YPE_2137 YPE_2138 cydA sucD FALSE 0.099 767.000 0.000 1.000 Y NA
 4588488 4588489 YPE_2138 YPE_2139 sucD sucC TRUE 1.000 0.000 0.806 0.001 Y NA
 4588489 4588490 YPE_2139 YPE_2140 sucC sucB TRUE 0.838 113.000 0.136 1.000 Y NA
 4588490 4588491 YPE_2140 YPE_2141 sucB sucA TRUE 0.994 30.000 0.667 1.000 Y NA
 4588491 4588492 YPE_2141 YPE_2142 sucA sdhB FALSE 0.267 356.000 0.067 1.000 Y NA
 4588492 4588493 YPE_2142 YPE_2143 sdhB sdhA TRUE 0.993 50.000 0.604 0.002 Y NA
 4588493 4588494 YPE_2143 YPE_2144 sdhA sdhD TRUE 1.000 1.000 0.705 0.002 Y NA
 4588494 4588495 YPE_2144 YPE_2145 sdhD sdhC TRUE 0.999 -6.000 0.453 0.001 Y NA
 4588498 4588499 YPE_2148 YPE_2149   recN TRUE 0.557 87.000 0.170 1.000 N NA
 4588499 4588500 YPE_2149 YPE_2150 recN smpA FALSE 0.176 105.000 0.049 1.000 N NA
 4588501 4588502 YPE_2151 YPE_2152     TRUE 0.970 -7.000 0.124 NA   NA
 4588503 4588504 YPE_2153 YPE_2154 smpB ssrA TRUE 0.498 49.000 0.000 NA   NA
 4588504 4588505 YPE_2154 YPE_2155 ssrA tnp FALSE 0.113 223.000 0.000 NA   NA
 4588505 4588506 YPE_2155 YPE_2156 tnp   TRUE 0.576 224.000 0.000 0.081 Y NA
 4588506 4588507 YPE_2156 YPE_2157     FALSE 0.321 79.000 0.000 NA   NA
 4588507 4588508 YPE_2157 YPE_2158     TRUE 0.866 51.000 0.250 NA   NA
 4588510 4588511 YPE_2160 YPE_2161     FALSE 0.296 92.000 0.000 NA   NA
 4588511 4588512 YPE_2161 YPE_2162     TRUE 0.974 13.000 0.333 NA   NA
 4588512 4588513 YPE_2162 YPE_2163     FALSE 0.163 193.000 0.000 NA   NA
 4588513 4588514 YPE_2163 YPE_2164     TRUE 0.995 -7.000 0.500 NA   NA
 4588514 4588515 YPE_2164 YPE_2165     TRUE 0.934 -3.000 0.000 NA   NA
 4588517 4588519 YPE_2168 YPE_2169 intA   FALSE 0.299 89.000 0.000 NA   NA
 4588519 4588520 YPE_2169 YPE_2170     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4588524 4588525 YPE_2172 YPE_2173   dnaQ FALSE 0.259 113.000 0.000 NA   NA
 4588528 4588529 YPE_2176 YPE_2177 gloB mltD TRUE 0.776 72.000 0.233 1.000   NA
 4588530 4588531 YPE_2178 YPE_2179     FALSE 0.037 361.000 0.000 NA   NA
 4588531 4588532 YPE_2179 YPE_2180   dkgB TRUE 0.592 35.000 0.000 NA   NA
 4588532 4588533 YPE_2180 YPE_2181 dkgB   FALSE 0.037 359.000 0.000 NA   NA
 4588533 4588534 YPE_2181 YPE_2182     FALSE 0.251 124.000 0.000 NA   NA
 4588534 4588535 YPE_2182 YPE_2183     FALSE 0.265 108.000 0.000 NA   NA
 4588535 4588536 YPE_2183 YPE_2184     FALSE 0.079 253.000 0.000 NA   NA
 4588536 4588537 YPE_2184 YPE_2185     FALSE 0.235 137.000 0.000 NA   NA
 4588538 4588539 YPE_2186 YPE_2187   gmhB FALSE 0.026 442.000 0.000 NA   NA
 4588540 4588541 YPE_2188 YPE_2189 abc   TRUE 0.999 -7.000 0.584 1.000 Y NA
 4588541 4588542 YPE_2189 YPE_2190     TRUE 0.968 64.000 0.411 NA Y NA
 4588542 4588543 YPE_2190 YPE_2191   rcsF TRUE 0.853 118.000 0.500 NA   NA
 4588543 4588544 YPE_2191 YPE_2192 rcsF   TRUE 0.989 -3.000 0.247 NA   NA
 4588544 4588545 YPE_2192 YPE_2193   proS FALSE 0.313 104.000 0.048 NA   NA
 4588546 4588547 YPE_2194 YPE_2195 cutF   TRUE 0.524 40.000 0.027 NA   NA
 4588547 4588548 YPE_2195 YPE_2196     TRUE 0.906 3.000 0.034 1.000   NA
 4588549 4588550 YPE_2197 YPE_2198     TRUE 0.976 -13.000 0.179 NA   NA
 4588551 4588552 YPE_2199 YPE_2200   tilS FALSE 0.015 237.000 0.005 1.000 N NA
 4588552 4588553 YPE_2200 YPE_2201 tilS   TRUE 0.670 2.000 0.015 1.000 N NA
 4588553 4588554 YPE_2201 YPE_2202   accA FALSE 0.034 184.000 0.008 1.000 N NA
 4588554 4588555 YPE_2202 YPE_2203 accA dnaE TRUE 0.871 13.000 0.122 1.000 N NA
 4588555 4588556 YPE_2203 YPE_2204 dnaE rnhB TRUE 0.792 130.000 0.104 1.000 Y NA
 4588556 4588557 YPE_2204 YPE_2205 rnhB lpxB TRUE 0.979 -3.000 0.186 1.000 N NA
 4588557 4588558 YPE_2205 YPE_2206 lpxB lpxA TRUE 0.996 4.000 0.289 1.000 Y NA
 4588558 4588559 YPE_2206 YPE_2207 lpxA fabZ TRUE 0.996 4.000 0.850 1.000 N NA
 4588559 4588560 YPE_2207 YPE_2208 fabZ lpxD TRUE 0.883 158.000 0.796 1.000 N NA
 4588560 4588561 YPE_2208 YPE_2209 lpxD ompH TRUE 0.999 4.000 0.814 1.000 Y NA
 4588561 4588562 YPE_2209 YPE_2210 ompH   TRUE 0.916 158.000 0.354 1.000 Y NA
 4588562 4588563 YPE_2210 YPE_2211     TRUE 0.966 37.000 0.204 1.000 Y NA
 4588563 4588564 YPE_2211 YPE_2212   geneA TRUE 0.655 29.000 0.080 1.000 N NA
 4588564 4588565 YPE_2212 YPE_2213 geneA uppS TRUE 0.995 10.000 0.400 1.000 Y NA
 4588565 4588566 YPE_2213 YPE_2214 uppS dxr TRUE 0.460 224.000 0.025 1.000 Y NA
 4588566 4588567 YPE_2214 YPE_2215 dxr frr FALSE 0.048 214.000 0.032 1.000 N NA
 4588567 4588568 YPE_2215 YPE_2216 frr pyrH TRUE 0.846 136.000 0.626 1.000 N NA
 4588568 4588569 YPE_2216 YPE_2217 pyrH tsf TRUE 0.593 209.000 0.416 1.000 N NA
 4588569 4588570 YPE_2217 YPE_2218 tsf rpsB TRUE 0.973 128.000 0.748 1.000 Y NA
 4588570 4588571 YPE_2218 YPE_2219 rpsB tff TRUE 0.649 28.000 0.000 NA   NA
 4588572 4588573 YPE_2220 YPE_2221 ampM glnD TRUE 0.977 3.000 0.243 1.000 N NA
 4588573 4588574 YPE_2221 YPE_2222 glnD dapD FALSE 0.247 175.000 0.097 1.000 N NA
 4588574 4588575 YPE_2222 YPE_2223 dapD   FALSE 0.255 124.000 0.035 NA   NA
 4588576 4588577 YPE_2224 YPE_2225   truC TRUE 0.873 28.000 0.209 1.000 N NA
 4588577 4588578 YPE_2225 YPE_2226 truC   TRUE 0.996 0.000 0.518 1.000   NA
 4588578 4588579 YPE_2226 YPE_2227   tnp FALSE 0.084 254.000 0.000 1.000   NA
 4588579 4588580 YPE_2227 YPE_2228 tnp csrB FALSE 0.228 144.000 0.000 NA   NA
 4588580 4588581 YPE_2228 YPE_2229 csrB syd FALSE 0.105 229.000 0.000 NA   NA
 4588582 4588583 YPE_2230 YPE_2231 queF   FALSE 0.360 153.000 0.079 1.000   NA
 4588583 4588584 YPE_2231 YPE_2232   exo FALSE 0.268 260.000 0.178 1.000   NA
 4588585 4588586 YPE_2233 YPE_2234     TRUE 0.975 -7.000 0.144 NA   NA
 4588586 4588587 YPE_2234 YPE_2235   gcvA FALSE 0.347 166.000 0.081 1.000   NA
 4588588 4588589 YPE_2236 YPE_2237 gcvB   FALSE 0.126 213.000 0.000 NA   NA
 4588589 4588590 YPE_2237 YPE_2238     TRUE 0.690 135.000 0.122 0.001   NA
 4588591 4588592 YPE_2239 YPE_2240   mltA FALSE 0.068 143.000 0.021 1.000 N NA
 4588593 4588594 YPE_2241 YPE_2242     FALSE 0.251 124.000 0.000 NA   NA
 4588597 4588598 YPE_2245 YPE_2246 recD recB TRUE 1.000 -3.000 0.688 0.001 Y NA
 4588598 4588599 YPE_2246 YPE_2247 recB ptr TRUE 0.947 -3.000 0.092 1.000 N NA
 4588599 4588600 YPE_2247 YPE_2248 ptr recC FALSE 0.367 82.000 0.092 1.000 N NA
 4588600 4588601 YPE_2248 YPE_2249 recC   FALSE 0.230 135.000 0.076 NA N NA
 4588601 4588602 YPE_2249 YPE_2250     TRUE 0.994 -12.000 0.538 NA   NA
 4588602 4588603 YPE_2250 YPE_2251     TRUE 0.994 -3.000 0.373 NA   NA
 4588603 4588604 YPE_2251 YPE_2486C   ppdA TRUE 0.911 -9.000 0.000 NA   NA
 4588604 4588606 YPE_2486C YPE_2253 ppdA   FALSE 0.346 72.000 0.000 NA   NA
 4588606 4588607 YPE_2253 YPE_2254     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4588607 4588608 YPE_2254 YPE_2255     FALSE 0.005 3578.000 0.000 1.000 N NA
 4588608 4588609 YPE_2255 YPE_2256     FALSE 0.013 388.000 0.000 1.000 N NA
 4588609 4588610 YPE_2256 YPE_2257     FALSE 0.355 78.000 0.089 NA N NA
 4588611 4588612 YPE_2258 YPE_2259     FALSE 0.292 208.000 0.000 0.013   NA
 4588612 4588613 YPE_2259 YPE_2260     FALSE 0.048 563.000 0.000 0.013   NA
 4588614 4588615 YPE_2261 YPE_2262 yapH   FALSE 0.015 854.000 0.000 NA   NA
 4588617 4588618 YPE_2264 YPE_2265     TRUE 0.991 13.000 0.842 1.000 N NA
 4588619 4588620 YPE_2266 YPE_2267     TRUE 0.882 4.000 0.000 NA   NA
 4588621 4588622 YPE_2268 YPE_2269     TRUE 0.939 54.000 0.167 1.000 Y NA
 4588623 4588625 YPE_2510C YPE_2270     FALSE 0.222 153.000 0.000 NA   NA
 4588626 4588627 YPE_2271 YPE_2272 iutA iucD TRUE 0.428 72.000 0.100 1.000 N NA
 4588627 4588628 YPE_2272 YPE_2273 iucD iucC TRUE 0.998 -3.000 0.417 1.000 Y NA
 4588628 4588629 YPE_2273 YPE_2274 iucC iucB TRUE 0.990 -3.000 0.250 1.000   NA
 4588629 4588630 YPE_2274 YPE_2275 iucB iucA TRUE 0.899 -16.000 0.000 NA   NA
 4588633 4588634 YPE_2278 YPE_2279     FALSE 0.036 377.000 0.000 1.000   NA
 4588637 4588638 YPE_2282 YPE_2283     FALSE 0.025 451.000 0.000 NA   NA
 4588638 4588639 YPE_2283 YPE_2284     FALSE 0.369 68.000 0.000 NA   NA
 4588639 4588640 YPE_2284 YPE_2285     TRUE 0.584 36.000 0.000 NA   NA
 4588640 4588642 YPE_2285 YPE_2286     FALSE 0.267 106.000 0.000 NA   NA
 4588642 4588643 YPE_2286 YPE_2287     FALSE 0.013 1400.000 0.000 NA   NA
 4588643 4588644 YPE_2287 YPE_2288     TRUE 0.533 43.000 0.000 NA   NA
 4588644 4588645 YPE_2288 YPE_2289     TRUE 0.800 12.000 0.000 NA   NA
 4588645 4588646 YPE_2289 YPE_2290     TRUE 0.998 -3.000 0.750 NA   NA
 4588646 4588647 YPE_2290 YPE_2291     TRUE 0.924 0.000 0.000 NA   NA
 4588647 4588648 YPE_2291 YPE_2292     TRUE 0.882 4.000 0.000 NA   NA
 4588648 4588649 YPE_2292 YPE_2293     FALSE 0.053 418.000 0.083 NA   NA
 4588649 4588650 YPE_2293 YPE_2294     TRUE 0.976 -3.000 0.125 NA   NA
 4588650 4588651 YPE_2294 YPE_2295     TRUE 0.764 15.000 0.000 NA   NA
 4588651 4588652 YPE_2295 YPE_2296     FALSE 0.261 111.000 0.000 NA   NA
 4588652 4588653 YPE_2296 YPE_2297     FALSE 0.032 387.000 0.000 NA   NA
 4588653 4588654 YPE_2297 YPE_2298     TRUE 0.472 54.000 0.000 NA   NA
 4588654 4588656 YPE_2298 YPE_2299     FALSE 0.020 535.000 0.000 NA   NA
 4588656 4588657 YPE_2299 YPE_2300     TRUE 0.752 16.000 0.000 NA   NA
 4588657 4588658 YPE_2300 YPE_2301     TRUE 0.866 5.000 0.000 NA   NA
 4588658 4588659 YPE_2301 YPE_2302     FALSE 0.287 96.000 0.000 NA   NA
 4588659 4588660 YPE_2302 YPE_2303   insB TRUE 0.881 66.000 0.000 0.026 Y NA
 4588660 4588661 YPE_2303 YPE_2304 insB   FALSE 0.017 608.000 0.000 NA   NA
 4588661 4588662 YPE_2304 YPE_2305     TRUE 0.656 27.000 0.000 NA   NA
 4588665 4588666 YPE_2308 YPE_2309 speC   FALSE 0.007 556.000 0.000 1.000 N NA
 4588666 4588667 YPE_2309 YPE_2310     TRUE 0.991 46.000 0.545 0.013 Y NA
 4588667 4588668 YPE_2310 YPE_2311     TRUE 1.000 -3.000 0.727 0.013 Y NA
 4588669 4588670 YPE_2312 YPE_2313     TRUE 0.948 38.000 0.128 1.000 Y NA
 4588670 4588671 YPE_2313 YPE_2314   mltC FALSE 0.009 429.000 0.000 NA N NA
 4588671 4588672 YPE_2314 YPE_2315 mltC   FALSE 0.319 171.000 0.128 NA N NA
 4588672 4588673 YPE_2315 YPE_2316   mutY FALSE 0.363 178.000 0.150 1.000 N NA
 4588674 4588675 YPE_2317 YPE_2318     TRUE 0.963 0.000 0.092 NA   NA
 4588675 4588676 YPE_2318 YPE_2319     TRUE 0.503 111.000 0.123 NA   NA
 4588676 4588677 YPE_2319 YPE_2321   yggN FALSE 0.260 112.000 0.000 NA   NA
 4588677 4588679 YPE_2321 YPE_2322 yggN   FALSE 0.022 499.000 0.000 NA   NA
 4588680 4588681 YPE_2323 YPE_2324     TRUE 0.978 -7.000 0.218 1.000 N NA
 4588681 4588682 YPE_2324 YPE_2325     FALSE 0.225 100.000 0.016 NA   NA
 4588682 4588683 YPE_2325 YPE_2326     TRUE 0.964 -3.000 0.081 NA   NA
 4588683 4588684 YPE_2326 YPE_2327   proC FALSE 0.151 288.000 0.117 1.000   NA
 4588684 4588685 YPE_2327 YPE_2328 proC   TRUE 0.482 133.000 0.125 NA   NA
 4588687 4588688 YPE_2330 YPE_2331     TRUE 0.946 4.000 0.095 1.000   NA
 4588688 4588689 YPE_2331 YPE_2332     FALSE 0.145 180.000 0.004 1.000   NA
 4588689 4588690 YPE_2332 YPE_2333     TRUE 0.984 0.000 0.263 NA N NA
 4588690 4588691 YPE_2333 YPE_2334   gshB FALSE 0.362 116.000 0.120 NA N NA
 4588691 4588692 YPE_2334 YPE_2335 gshB   TRUE 0.895 26.000 0.173 NA   NA
 4588692 4588693 YPE_2335 YPE_2336   endA FALSE 0.307 252.000 0.201 NA   NA
 4588693 4588694 YPE_2336 YPE_2337 endA sprT TRUE 0.686 98.000 0.210 1.000   NA
 4588694 4588695 YPE_2337 YPE_2338 sprT metK FALSE 0.166 193.000 0.030 1.000   NA
 4588696 4588697 YPE_2339 YPE_2340 speA   FALSE 0.039 160.000 0.006 1.000 N NA
 4588699 4588700 YPE_2342 YPE_2343 tktA tnp FALSE 0.020 308.000 0.000 1.000 N NA
 4588700 4588701 YPE_2343 YPE_2344 tnp   TRUE 0.702 184.000 0.000 0.079 Y NA
 4588701 4588702 YPE_2344 YPE_2345     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4588702 4588703 YPE_2345 YPE_2346   epd FALSE 0.019 315.000 0.000 1.000 N NA
 4588703 4588704 YPE_2346 YPE_2347 epd pgk TRUE 0.866 103.000 0.070 0.005 Y NA
 4588704 4588705 YPE_2347 YPE_2348 pgk fbaA TRUE 0.843 120.000 0.056 0.005 Y NA
 4588705 4588706 YPE_2348 YPE_2349 fbaA   FALSE 0.012 438.000 0.038 1.000 N NA
 4588706 4588707 YPE_2349 YPE_2350     FALSE 0.093 263.000 0.049 1.000   NA
 4588707 4588708 YPE_2350 YPE_2351     FALSE 0.269 190.000 0.075 NA   NA
 4588710 4588711 YPE_2353 YPE_2354 rpiA serA FALSE 0.017 307.000 0.029 1.000 N NA
 4588712 4588713 YPE_2355 YPE_2356   ssrS FALSE 0.248 127.000 0.000 NA   NA
 4588714 4588715 YPE_2357 YPE_2358   ubiH FALSE 0.048 1464.000 0.156 NA   NA
 4588715 4588716 YPE_2358 YPE_2359 ubiH visC TRUE 0.963 173.000 0.474 0.001 Y NA
 4588716 4588717 YPE_2359 YPE_2360 visC gcvT FALSE 0.002 721.000 0.004 1.000 N NA
 4588717 4588718 YPE_2360 YPE_2361 gcvT gcvH TRUE 0.974 69.000 0.317 0.001 Y NA
 4588718 4588719 YPE_2361 YPE_2362 gcvH gcvP TRUE 0.882 212.000 0.249 0.001 Y NA
 4588719 4588720 YPE_2362 YPE_2363 gcvP   FALSE 0.033 378.000 0.000 NA   NA
 4588720 4588721 YPE_2363 YPE_2364     FALSE 0.013 1210.000 0.000 NA   NA
 4588721 4588722 YPE_2364 YPE_2365     TRUE 0.415 62.000 0.000 NA   NA
 4588722 4588723 YPE_2365 YPE_2366     FALSE 0.146 202.000 0.000 NA   NA
 4588723 4588724 YPE_2366 YPE_2367     FALSE 0.074 258.000 0.000 NA   NA
 4588726 4588727 YPE_2369 YPE_2370     TRUE 0.929 -19.000 0.061 NA   NA
 4588727 4588728 YPE_2370 YPE_2371   creB TRUE 0.948 -3.000 0.051 NA   NA
 4588728 4588729 YPE_2371 YPE_2372 creB creC TRUE 0.996 25.000 0.776 1.000 Y NA
 4588729 4588730 YPE_2372 YPE_2373 creC creD TRUE 0.706 100.000 0.311 NA N NA
 4588732 4588733 YPE_2375 YPE_2376 xerD dsbC TRUE 0.636 31.000 0.079 1.000 N NA
 4588733 4588734 YPE_2376 YPE_2377 dsbC recJ TRUE 0.856 7.000 0.082 1.000 N NA
 4588734 4588735 YPE_2377 YPE_2378 recJ prfB FALSE 0.067 179.000 0.028 1.000 N NA
 4588735 4588736 YPE_2378 YPE_2379 prfB lysS TRUE 0.992 10.000 0.162 0.040 Y NA
 4588736 4588737 YPE_2379 YPE_2380 lysS   FALSE 0.161 194.000 0.000 NA   NA
 4588737 4588738 YPE_2380 YPE_2381     FALSE 0.208 166.000 0.000 NA   NA
 4588738 4588739 YPE_2381 YPE_2382     FALSE 0.005 865.000 0.000 NA N NA
 4588739 4588740 YPE_2382 YPE_2383     TRUE 0.769 63.000 0.189 NA   NA
 4588740 4588741 YPE_2383 YPE_2384   mqsR FALSE 0.210 164.000 0.000 NA   NA
 4588741 4588742 YPE_2384 YPE_2385 mqsR   TRUE 0.998 0.000 0.857 NA   NA
 4588745 4588746 YPE_2388 YPE_2389     FALSE 0.183 182.000 0.000 NA   NA
 4588746 4588747 YPE_2389 YPE_2390     TRUE 0.854 6.000 0.000 NA   NA
 4588747 4588748 YPE_2390 YPE_2391     TRUE 0.789 13.000 0.000 NA   NA
 4588749 4588750 YPE_2392 YPE_2393     FALSE 0.023 504.000 0.000 1.000   NA
 4588750 4588751 YPE_2393 YPE_2394     FALSE 0.021 510.000 0.000 NA   NA
 4588751 4588752 YPE_2394 YPE_2395     TRUE 0.510 47.000 0.000 NA   NA
 4588752 4588753 YPE_2395 YPE_2396     FALSE 0.088 245.000 0.000 NA   NA
 4588753 4588754 YPE_2396 YPE_2397     TRUE 0.971 21.000 0.429 NA   NA
 4588754 4588755 YPE_2397 YPE_2398     FALSE 0.049 312.000 0.000 NA   NA
 4588755 4588756 YPE_2398 YPE_2399     FALSE 0.317 81.000 0.000 NA   NA
 4588756 4588757 YPE_2399 YPE_2400     FALSE 0.123 217.000 0.000 NA   NA
 4588758 4588759 YPE_2401 YPE_2402     TRUE 0.950 0.000 0.065 NA   NA
 4588759 4588760 YPE_2402 YPE_2403     FALSE 0.027 424.000 0.000 NA   NA
 4588760 4588761 YPE_2403 YPE_2404     FALSE 0.034 376.000 0.000 NA   NA
 4588761 4588762 YPE_2404 YPE_2405     FALSE 0.015 779.000 0.000 NA   NA
 4588762 4588763 YPE_2405 YPE_2406     TRUE 0.499 435.000 0.217 0.012 Y NA
 4588763 4588764 YPE_2406 YPE_2407     TRUE 0.955 66.000 0.200 0.012 Y NA
 4588764 4588765 YPE_2407 YPE_2408     FALSE 0.170 549.000 0.000 0.096 Y NA
 4588766 4588767 YPE_2409 YPE_2410     TRUE 0.972 160.000 0.815 1.000 Y NA
 4588767 4588768 YPE_2410 YPE_2411     TRUE 0.999 12.000 0.885 0.057 Y NA
 4588768 4588769 YPE_2411 YPE_2412     TRUE 0.995 5.000 0.308 1.000 Y NA
 4588769 4588770 YPE_2412 YPE_2413   bgaB TRUE 0.971 51.000 0.190 0.003 Y NA
 4588770 4588771 YPE_2413 YPE_2414 bgaB   TRUE 0.843 112.000 0.143 1.000 Y NA
 4588774 4588775 YPE_2417 YPE_2418     TRUE 0.916 148.000 0.341 1.000 Y NA
 4588777 4588778 YPE_2420 YPE_2421   agaY TRUE 0.887 24.000 0.148 NA   NA
 4588778 4588779 YPE_2421 YPE_2422 agaY   TRUE 0.720 109.000 0.261 NA   NA
 4588779 4588780 YPE_2422 YPE_2423     TRUE 0.913 123.000 0.727 NA   NA
 4588780 4588781 YPE_2423 YPE_2424     TRUE 0.983 21.000 0.615 1.000   NA
 4588781 4588782 YPE_2424 YPE_2425     FALSE 0.203 244.000 0.000 0.016   NA
 4588782 4588783 YPE_2425 YPE_2426   kduD2 TRUE 0.979 16.000 0.462 1.000   NA
 4588783 4588784 YPE_2426 YPE_2427 kduD2   FALSE 0.068 196.000 0.000 1.000 N NA
 4588784 4588785 YPE_2427 YPE_2428     TRUE 0.991 3.000 0.104 1.000 Y NA
 4588785 4588786 YPE_2428 YPE_2429     TRUE 0.990 86.000 0.833 0.007 Y NA
 4588786 4588787 YPE_2429 YPE_2430     TRUE 1.000 -10.000 0.917 0.008 Y NA
 4588787 4588788 YPE_2430 YPE_2431     TRUE 0.996 47.000 0.909 0.008 Y NA
 4588788 4588789 YPE_2431 YPE_2432     TRUE 0.870 18.000 0.150 1.000 N NA
 4588789 4588790 YPE_2432 YPE_2433   agaZ TRUE 0.985 -3.000 0.240 1.000 N NA
 4588790 4588791 YPE_2433 YPE_2434 agaZ   TRUE 0.977 50.000 0.400 1.000 Y NA
 4588795 4588796 YPE_2437 YPE_2438     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4588797 4588798 YPE_2440 YPE_2441     TRUE 0.891 70.000 0.444 1.000   NA
 4588798 4588799 YPE_2441 YPE_2442     TRUE 0.743 115.000 0.286 1.000   NA
 4588799 4588800 YPE_2442 YPE_2443     TRUE 0.703 22.000 0.000 NA   NA
 4588800 4588801 YPE_2443 YPE_2444     FALSE 0.032 387.000 0.000 NA   NA
 4588802 4588803 YPE_2445 YPE_2446     FALSE 0.015 743.000 0.000 NA   NA
 4588803 4588804 YPE_2446 YPE_2447     TRUE 0.939 68.000 0.667 NA   NA
 4588804 4588805 YPE_2447 YPE_2448     TRUE 0.924 81.000 0.667 NA   NA
 4588805 4588806 YPE_2448 YPE_2449     TRUE 0.994 -3.000 0.012 0.002 Y NA
 4588806 4588807 YPE_2449 YPE_2451   gspF TRUE 0.902 -13.000 0.000 NA   NA
 4588807 4588809 YPE_2451 YPE_2452 gspF   TRUE 0.719 20.000 0.000 NA   NA
 4588809 4588810 YPE_2452 YPE_2453     TRUE 0.993 5.000 0.087 0.002 Y NA
 4588810 4588811 YPE_2453 YPE_2454     TRUE 0.907 38.000 0.132 0.002   NA
 4588811 4588812 YPE_2454 YPE_2455     TRUE 0.998 -7.000 0.569 0.002   NA
 4588812 4588813 YPE_2455 YPE_2456     TRUE 0.996 9.000 0.461 1.000 Y NA
 4588813 4588814 YPE_2456 YPE_2457     TRUE 0.998 5.000 0.537 0.069 Y NA
 4588814 4588815 YPE_2457 YPE_2458     TRUE 0.934 -3.000 0.000 NA   NA
 4588815 4588816 YPE_2458 YPE_2459     TRUE 0.664 26.000 0.000 NA   NA
 4588818 4588819 YPE_2461 YPE_2462     TRUE 0.996 -3.000 0.500 NA   NA
 4588819 4588820 YPE_2462 YPE_2463   cheD FALSE 0.143 203.000 0.000 NA   NA
 4588821 4588822 YPE_2464 YPE_2465     TRUE 0.585 113.000 0.157 1.000   NA
 4588823 4588824 YPE_2466 YPE_2467     FALSE 0.014 369.000 0.000 1.000 N NA
 4588828 4588829 YPE_2471 YPE_2472 bisC omrB FALSE 0.084 248.000 0.000 NA   NA
 4588829 4588830 YPE_2472 YPE_2473 omrB aas FALSE 0.266 107.000 0.000 NA   NA
 4588830 4588831 YPE_2473 YPE_2474 aas   TRUE 0.976 -3.000 0.124 NA   NA
 4588831 4588832 YPE_2474 YPE_2475     FALSE 0.207 167.000 0.000 NA   NA
 4588833 4588834 YPE_2476 YPE_2477 tas mutH FALSE 0.009 335.000 0.015 1.000 N NA
 4588835 4588836 YPE_2478 YPE_2479     TRUE 0.934 -3.000 0.000 NA   NA
 4588836 4588837 YPE_2479 YPE_2480   nudH TRUE 0.581 26.000 0.008 NA   NA
 4588837 4588838 YPE_2480 YPE_2481 nudH ptsP TRUE 0.406 13.000 0.012 1.000 N NA
 4588838 4588839 YPE_2481 YPE_2482 ptsP lgt FALSE 0.011 251.000 0.003 1.000 N NA
 4588839 4588840 YPE_2482 YPE_2483 lgt thyA TRUE 0.935 7.000 0.164 1.000 N NA
 4588840 4588841 YPE_2483 YPE_2484 thyA   TRUE 0.622 31.000 0.000 NA   NA
 4588841 4588842 YPE_2484 YPE_2486N   ppdA TRUE 0.902 -13.000 0.000 NA   NA
 4588842 4588844 YPE_2486N YPE_2487 ppdA   FALSE 0.304 87.000 0.000 NA   NA
 4588844 4588845 YPE_2487 YPE_2488     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4588845 4588846 YPE_2488 YPE_2489     FALSE 0.224 61.000 0.000 1.000 N NA
 4588846 4588847 YPE_2489 YPE_2490     TRUE 0.788 44.000 0.000 0.002   NA
 4588847 4588848 YPE_2490 YPE_2491     FALSE 0.012 5811.000 0.000 NA   NA
 4588848 4588849 YPE_2491 YPE_2492     TRUE 0.934 -3.000 0.000 NA   NA
 4588849 4588850 YPE_2492 YPE_2493     TRUE 0.991 -7.000 0.074 1.000 Y NA
 4588850 4588851 YPE_2493 YPE_2494     TRUE 0.908 -10.000 0.000 NA   NA
 4588851 4588852 YPE_2494 YPE_2495     TRUE 0.924 0.000 0.000 NA   NA
 4588852 4588853 YPE_2495 YPE_2496     TRUE 0.993 -7.000 0.000 0.005 Y NA
 4588854 4588855 YPE_2497 YPE_2498     FALSE 0.026 436.000 0.000 NA   NA
 4588856 4588857 YPE_2499 YPE_2501 gntP   FALSE 0.014 1001.000 0.000 NA   NA
 4588857 4588859 YPE_2501 YPE_2502     FALSE 0.018 586.000 0.000 NA   NA
 4588859 4588860 YPE_2502 YPE_2503     TRUE 0.664 26.000 0.000 NA   NA
 4588860 4588861 YPE_2503 YPE_2504     TRUE 0.789 14.000 0.000 1.000   NA
 4588861 4588862 YPE_2504 YPE_2505     FALSE 0.065 275.000 0.000 NA   NA
 4588862 4588863 YPE_2505 YPE_2506     FALSE 0.020 544.000 0.000 NA   NA
 4588864 4588865 YPE_2507 YPE_2508     FALSE 0.025 282.000 0.000 1.000 N NA
 4588868 4588869 YPE_2511 YPE_2512     TRUE 0.939 54.000 0.167 1.000 Y NA
 4588870 4588871 YPE_2513 YPE_2515   pcpY FALSE 0.082 250.000 0.000 NA   NA
 4588873 4588874 YPE_2516 YPE_2517     FALSE 0.335 74.000 0.000 NA   NA
 4588874 4588875 YPE_2517 YPE_2518     TRUE 0.934 -3.000 0.000 NA   NA
 4588875 4588876 YPE_2518 YPE_2519     FALSE 0.143 203.000 0.000 NA   NA
 4588876 4588877 YPE_2519 YPE_2520   lafU FALSE 0.361 69.000 0.000 NA   NA
 4588877 4588878 YPE_2520 YPE_2521 lafU lafT TRUE 0.999 0.000 0.846 1.000 Y NA
 4588878 4588879 YPE_2521 YPE_2522 lafT lafS TRUE 0.975 16.000 0.500 1.000 N NA
 4588879 4588880 YPE_2522 YPE_2523 lafS lafF TRUE 0.984 6.000 0.333 1.000   NA
 4588880 4588881 YPE_2523 YPE_2524 lafF lafE TRUE 0.918 39.000 0.296 1.000   NA
 4588881 4588882 YPE_2524 YPE_2525 lafE lafD TRUE 0.940 2.000 0.062 NA   NA
 4588882 4588883 YPE_2525 YPE_2526 lafD lafC TRUE 0.933 2.000 0.054 NA   NA
 4588883 4588884 YPE_2526 YPE_2527 lafC lafB TRUE 0.999 10.000 0.865 0.003 Y NA
 4588884 4588885 YPE_2527 YPE_2528 lafB lafA3 TRUE 0.492 220.000 0.000 1.000 Y NA
 4588885 4588886 YPE_2528 YPE_2529 lafA3 lafA2 TRUE 0.486 283.000 0.000 0.002 Y NA
 4588886 4588887 YPE_2529 YPE_2530 lafA2 lafA FALSE 0.236 515.000 0.000 0.002 Y NA
 4588888 4588889 YPE_2531 YPE_2532 lafZ   TRUE 0.917 104.000 0.714 NA   NA
 4588890 4588891 YPE_2533 YPE_2534 lafW lfgL TRUE 0.991 12.000 0.667 NA   NA
 4588891 4588892 YPE_2534 YPE_2535 lfgL lfgK TRUE 0.986 29.000 0.576 0.002   NA
 4588892 4588893 YPE_2535 YPE_2536 lfgK lfgJ TRUE 0.839 113.000 0.457 NA   NA
 4588893 4588894 YPE_2536 YPE_2537 lfgJ lfgI TRUE 0.986 10.000 0.457 NA   NA
 4588894 4588895 YPE_2537 YPE_2538 lfgI lfgH TRUE 0.999 14.000 0.912 0.012 Y NA
 4588895 4588896 YPE_2538 YPE_2539 lfgH lfgG TRUE 0.997 35.000 0.941 0.009 Y NA
 4588896 4588897 YPE_2539 YPE_2540 lfgG lfgF FALSE 0.369 68.000 0.000 NA   NA
 4588900 4588901 YPE_2543 YPE_2544 lfgE lfgD TRUE 0.993 55.000 0.970 NA Y NA
 4588901 4588902 YPE_2544 YPE_2545 lfgD lfgC TRUE 0.999 3.000 0.914 NA Y NA
 4588902 4588903 YPE_2545 YPE_2546 lfgC lfgB TRUE 1.000 3.000 0.972 0.006 Y NA
 4588904 4588905 YPE_2547 YPE_2548 lfgA lfgM FALSE 0.234 229.000 0.113 NA   NA
 4588905 4588906 YPE_2548 YPE_2549 lfgM lfgN TRUE 0.995 7.000 0.585 0.003   NA
 4588907 4588908 YPE_2550 YPE_2551 lfiJ lfiI TRUE 0.891 4.000 0.035 1.000   NA
 4588908 4588909 YPE_2551 YPE_2552 lfiI lfiH TRUE 0.999 -7.000 0.816 1.000 Y NA
 4588909 4588910 YPE_2552 YPE_2553 lfiH lfiG TRUE 0.999 5.000 0.789 0.006 Y NA
 4588910 4588911 YPE_2553 YPE_2554 lfiG lfiF TRUE 1.000 -28.000 0.970 0.009 Y NA
 4588911 4588912 YPE_2554 YPE_2555 lfiF lfiE TRUE 0.999 10.000 1.000 0.009 Y NA
 4588912 4588913 YPE_2555 YPE_2556 lfiE lafK TRUE 0.978 17.000 0.576 1.000 N NA
 4588914 4588915 YPE_2557 YPE_2558 lfiM lfiN TRUE 0.970 -7.000 0.123 NA   NA
 4588915 4588916 YPE_2558 YPE_2559 lfiN lfiP TRUE 0.999 -3.000 0.368 0.089 Y NA
 4588916 4588917 YPE_2559 YPE_2560 lfiP lfiQ TRUE 0.998 2.000 0.263 0.012 Y NA
 4588917 4588918 YPE_2560 YPE_2561 lfiQ lfiR TRUE 0.998 1.000 0.281 0.003 Y NA
 4588918 4588919 YPE_2561 YPE_2562 lfiR lfhB TRUE 1.000 0.000 1.000 0.089 Y NA
 4588919 4588920 YPE_2562 YPE_2564 lfhB lfhA TRUE 0.902 -13.000 0.000 NA   NA
 4588920 4588922 YPE_2564 YPE_2565 lfhA   FALSE 0.128 212.000 0.000 NA   NA
 4588925 4588926 YPE_2568 YPE_2569     TRUE 0.937 25.000 0.000 1.000 Y NA
 4588926 4588927 YPE_2569 YPE_2570     TRUE 0.952 18.000 0.000 1.000 Y NA
 4588927 4588928 YPE_2570 YPE_2571   tnp FALSE 0.016 353.000 0.000 1.000 N NA
 4588928 4588929 YPE_2571 YPE_2572 tnp tnp TRUE 0.507 252.000 0.000 0.025 Y NA
 4588930 4588931 YPE_2573 YPE_2574 tadV rcpC TRUE 0.845 52.000 0.222 NA   NA
 4588931 4588932 YPE_2574 YPE_2576 rcpC rcpA TRUE 0.934 -3.000 0.000 NA   NA
 4588932 4588934 YPE_2576 YPE_2577 rcpA tadZ FALSE 0.054 298.000 0.000 NA   NA
 4588934 4588935 YPE_2577 YPE_2578 tadZ tadA TRUE 0.998 12.000 0.727 NA Y NA
 4588935 4588936 YPE_2578 YPE_2579 tadA tadB TRUE 0.999 -3.000 0.800 1.000 Y NA
 4588936 4588937 YPE_2579 YPE_2580 tadB tadC TRUE 1.000 -3.000 0.909 0.012 Y NA
 4588937 4588938 YPE_2580 YPE_2581 tadC tadD TRUE 0.996 -16.000 0.273 1.000 Y NA
 4588938 4588939 YPE_2581 YPE_2582 tadD tadE TRUE 0.988 0.000 0.000 NA Y NA
 4588939 4588940 YPE_2582 YPE_2583 tadE tadF TRUE 0.899 -16.000 0.000 NA   NA
 4588940 4588941 YPE_2583 YPE_2584 tadF tadG TRUE 0.972 25.000 0.500 NA   NA
 4588942 4588943 YPE_2585 YPE_2586 exbD exbB TRUE 0.999 4.000 0.810 0.071 Y NA
 4588944 4588945 YPE_2587 YPE_2588 metC   TRUE 0.514 193.000 0.212 NA   NA
 4588950 4588952 YPE_2593 YPE_2595 ygiQ sufI FALSE 0.050 308.000 0.000 NA   NA
 4588952 4588953 YPE_2595 YPE_2596 sufI plsC FALSE 0.367 179.000 0.154 1.000 N NA
 4588953 4588954 YPE_2596 YPE_2597 plsC parC FALSE 0.031 289.000 0.043 1.000 N NA
 4588956 4588957 YPE_2599 YPE_2600   parE TRUE 0.654 4.000 0.022 1.000 N NA
 4588957 4588958 YPE_2600 YPE_2601 parE   TRUE 0.679 102.000 0.217 NA   NA
 4588958 4588959 YPE_2601 YPE_2602   cpdA TRUE 0.995 -3.000 0.427 NA   NA
 4588959 4588960 YPE_2602 YPE_2603 cpdA   TRUE 0.863 82.000 0.433 NA   NA
 4588960 4588961 YPE_2603 YPE_2604     TRUE 0.955 34.000 0.443 NA   NA
 4588964 4588965 YPE_2607 YPE_2608     TRUE 0.991 10.000 0.632 NA   NA
 4588966 4588967 YPE_2609 YPE_2610 ygiD ribB FALSE 0.032 459.000 0.048 1.000   NA
 4588967 4588968 YPE_2610 YPE_2611 ribB   FALSE 0.213 162.000 0.000 NA   NA
 4588970 4588971 YPE_2613 YPE_2614 asoB rfaE FALSE 0.198 37.000 0.012 1.000 N NA
 4588971 4588972 YPE_2614 YPE_2615 rfaE glnE FALSE 0.260 135.000 0.083 1.000 N NA
 4588972 4588973 YPE_2615 YPE_2616 glnE   FALSE 0.264 171.000 0.053 1.000   NA
 4588974 4588975 YPE_2617 YPE_2618   cca FALSE 0.280 160.000 0.106 NA N NA
 4588976 4588977 YPE_2619 YPE_2620 bacA folB FALSE 0.123 274.000 0.128 1.000 N NA
 4588980 4588981 YPE_2623 YPE_2624 rpsU dnaG FALSE 0.213 136.000 0.067 1.000 N NA
 4588981 4588982 YPE_2624 YPE_2625 dnaG rpoD TRUE 0.632 158.000 0.299 1.000 N NA
 4588982 4588983 YPE_2625 YPE_2626 rpoD   FALSE 0.157 196.000 0.000 NA   NA
 4588984 4588985 YPE_2627 YPE_2628     FALSE 0.155 197.000 0.000 NA   NA
 4588985 4588986 YPE_2628 YPE_2629     TRUE 0.742 17.000 0.000 NA   NA
 4588986 4588987 YPE_2629 YPE_2630     FALSE 0.324 78.000 0.000 NA   NA
 4588987 4588988 YPE_2630 YPE_2631     TRUE 0.831 9.000 0.000 NA   NA
 4588988 4588989 YPE_2631 YPE_2632     FALSE 0.264 126.000 0.000 1.000   NA
 4588989 4588990 YPE_2632 YPE_2633     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4588990 4588991 YPE_2633 YPE_2634     FALSE 0.209 165.000 0.000 NA   NA
 4588992 4588993 YPE_2635 YPE_2636     FALSE 0.154 198.000 0.000 NA   NA
 4588995 4588996 YPE_2638 YPE_2639     FALSE 0.073 260.000 0.000 NA   NA
 4588997 4588998 YPE_2640 YPE_2641     FALSE 0.309 285.000 0.000 NA Y NA
 4588998 4588999 YPE_2641 YPE_2642     TRUE 0.752 16.000 0.000 NA   NA
 4588999 4589000 YPE_2642 YPE_2643     FALSE 0.203 170.000 0.000 NA   NA
 4589000 4589001 YPE_2643 YPE_2644     TRUE 0.882 4.000 0.000 NA   NA
 4589001 4589002 YPE_2644 YPE_2645     TRUE 0.979 -7.000 0.222 1.000 N NA
 4589003 4589004 YPE_2646 YPE_2647     FALSE 0.197 173.000 0.000 NA   NA
 4589004 4589005 YPE_2647 YPE_2648     TRUE 0.854 6.000 0.000 NA   NA
 4589005 4589006 YPE_2648 YPE_2649     TRUE 0.994 10.000 0.778 NA   NA
 4589006 4589007 YPE_2649 YPE_2650     TRUE 0.939 116.000 0.889 NA   NA
 4589007 4589008 YPE_2650 YPE_2651     TRUE 0.995 5.000 0.750 NA   NA
 4589009 4589010 YPE_2652 YPE_2653     TRUE 0.914 51.000 0.375 NA   NA
 4589010 4589011 YPE_2653 YPE_2654     TRUE 0.951 30.000 0.375 NA   NA
 4589011 4589012 YPE_2654 YPE_2655     TRUE 0.996 0.000 0.105 0.056 Y NA
 4589012 4589013 YPE_2655 YPE_2656     TRUE 0.993 54.000 0.733 0.056 Y NA
 4589013 4589014 YPE_2656 YPE_2657     FALSE 0.375 77.000 0.089 1.000 N NA
 4589014 4589015 YPE_2657 YPE_2658     FALSE 0.261 109.000 0.073 1.000 N NA
 4589015 4589016 YPE_2658 YPE_2659     TRUE 0.760 83.000 0.030 1.000 Y NA
 4589017 4589018 YPE_2660 YPE_2661     FALSE 0.221 102.000 0.016 NA   NA
 4589018 4589019 YPE_2661 YPE_2662   yapF TRUE 0.452 60.000 0.000 1.000   NA
 4589020 4589021 YPE_2663 YPE_2664     FALSE 0.317 81.000 0.000 NA   NA
 4589021 4589022 YPE_2664 YPE_2665     FALSE 0.069 266.000 0.000 NA   NA
 4589022 4589023 YPE_2665 YPE_2666     TRUE 0.934 -3.000 0.000 NA   NA
 4589023 4589024 YPE_2666 YPE_2667     TRUE 0.882 45.000 0.000 NA Y NA
 4589025 4589026 YPE_2668 YPE_2669 terY terX TRUE 0.887 33.000 0.200 NA   NA
 4589026 4589027 YPE_2669 YPE_2670 terX   TRUE 0.976 2.000 0.164 NA   NA
 4589027 4589028 YPE_2670 YPE_2671     TRUE 0.924 102.000 0.750 NA   NA
 4589028 4589029 YPE_2671 YPE_2672     TRUE 0.967 56.000 0.789 NA   NA
 4589029 4589030 YPE_2672 YPE_2673     TRUE 0.960 32.000 0.452 1.000   NA
 4589032 4589033 YPE_2675 YPE_2676   fadH FALSE 0.135 213.000 0.000 1.000   NA
 4589035 4589036 YPE_2678 YPE_2679 yapG   FALSE 0.096 239.000 0.000 NA   NA
 4589036 4589037 YPE_2679 YPE_2680     FALSE 0.224 203.000 0.072 NA   NA
 4589037 4589038 YPE_2680 YPE_2681   sstT FALSE 0.022 523.000 0.000 1.000   NA
 4589038 4589039 YPE_2681 YPE_2682 sstT tnp FALSE 0.064 201.000 0.000 1.000 N NA
 4589040 4589041 YPE_2683 YPE_2684   uxaA TRUE 0.462 153.000 0.126 NA   NA
 4589041 4589042 YPE_2684 YPE_2685 uxaA uxaB TRUE 0.983 11.000 0.126 1.000 Y NA
 4589042 4589043 YPE_2685 YPE_2686 uxaB uxaC TRUE 0.668 199.000 0.095 1.000 Y NA
 4589043 4589044 YPE_2686 YPE_2687 uxaC   FALSE 0.020 531.000 0.000 NA   NA
 4589045 4589046 YPE_2688 YPE_2689 exuT exuR TRUE 0.443 263.000 0.433 1.000 N NA
 4589046 4589047 YPE_2689 YPE_2690 exuR   FALSE 0.107 228.000 0.000 NA   NA
 4589047 4589048 YPE_2690 YPE_2691     FALSE 0.064 278.000 0.000 NA   NA
 4589048 4589049 YPE_2691 YPE_2692     TRUE 0.974 -3.000 0.118 NA   NA
 4589049 4589050 YPE_2692 YPE_2693     TRUE 0.775 226.000 0.684 NA   NA
 4589050 4589051 YPE_2693 YPE_2694     TRUE 0.882 4.000 0.000 NA   NA
 4589051 4589052 YPE_2694 YPE_2695     TRUE 0.866 5.000 0.000 NA   NA
 4589052 4589053 YPE_2695 YPE_2696     TRUE 0.977 3.000 0.185 NA   NA
 4589053 4589054 YPE_2696 YPE_2697     TRUE 0.985 -3.000 0.185 NA   NA
 4589054 4589055 YPE_2697 YPE_2698     FALSE 0.152 331.000 0.161 NA   NA
 4589055 4589056 YPE_2698 YPE_2700N   yqjG FALSE 0.306 86.000 0.000 NA   NA
 4589056 4589058 YPE_2700N YPE_2701 yqjG   FALSE 0.308 85.000 0.000 NA   NA
 4589058 4589059 YPE_2701 YPE_2702     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4589060 4589061 YPE_2703 YPE_2704 mutT secA FALSE 0.008 295.000 0.003 1.000 N NA
 4589061 4589062 YPE_2704 YPE_2705 secA   TRUE 0.447 78.000 0.065 1.000   NA
 4589064 4589065 YPE_2707 YPE_2708 lpxC ftsZ TRUE 0.486 85.000 0.134 1.000 N NA
 4589065 4589066 YPE_2708 YPE_2709 ftsZ ftsA TRUE 0.965 73.000 0.460 1.000 Y NA
 4589066 4589067 YPE_2709 YPE_2710 ftsA ftsQ TRUE 0.942 27.000 0.389 NA N NA
 4589067 4589068 YPE_2710 YPE_2711 ftsQ ddlB TRUE 0.998 2.000 0.372 NA Y NA
 4589068 4589069 YPE_2711 YPE_2712 ddlB murC TRUE 0.997 -7.000 0.153 0.003 Y NA
 4589069 4589070 YPE_2712 YPE_2713 murC murG TRUE 0.901 138.000 0.283 1.000 Y NA
 4589070 4589071 YPE_2713 YPE_2714 murG ftsW TRUE 0.996 -3.000 0.647 1.000 N NA
 4589071 4589072 YPE_2714 YPE_2715 ftsW murD TRUE 0.993 0.000 0.297 0.003 N NA
 4589072 4589073 YPE_2715 YPE_2716 murD mraY TRUE 0.999 3.000 0.647 0.003 Y NA
 4589073 4589074 YPE_2716 YPE_2717 mraY murF TRUE 0.999 -6.000 0.309 0.003 Y NA
 4589074 4589075 YPE_2717 YPE_2718 murF murE TRUE 0.999 -3.000 0.569 0.002 Y NA
 4589075 4589076 YPE_2718 YPE_2719 murE ftsI TRUE 0.989 2.000 0.059 1.000 Y NA
 4589076 4589077 YPE_2719 YPE_2720 ftsI ftsL TRUE 0.538 66.000 0.124 1.000 N NA
 4589077 4589078 YPE_2720 YPE_2721 ftsL   TRUE 0.984 -3.000 0.227 1.000 N NA
 4589078 4589079 YPE_2721 YPE_2722     TRUE 0.995 3.000 0.635 NA   NA
 4589083 4589084 YPE_2726 YPE_2727 tnp ilvH FALSE 0.066 199.000 0.000 1.000 N NA
 4589084 4589085 YPE_2727 YPE_2728 ilvH ilvI TRUE 0.999 3.000 0.371 0.002 Y NA
 4589085 4589086 YPE_2728 YPE_2729 ilvI   FALSE 0.047 319.000 0.000 NA   NA
 4589086 4589087 YPE_2729 YPE_2730     TRUE 0.622 31.000 0.000 NA   NA
 4589087 4589088 YPE_2730 YPE_2731     TRUE 0.934 -3.000 0.000 NA   NA
 4589088 4589089 YPE_2731 YPE_2732   leuO FALSE 0.043 334.000 0.000 NA   NA
 4589090 4589091 YPE_2733 YPE_2734 tnp leuA FALSE 0.103 147.000 0.000 1.000 N NA
 4589091 4589092 YPE_2734 YPE_2735 leuA leuB TRUE 0.997 -3.000 0.126 0.001 Y NA
 4589092 4589093 YPE_2735 YPE_2736 leuB leuC TRUE 0.998 2.000 0.275 0.001 Y NA
 4589093 4589094 YPE_2736 YPE_2737 leuC leuD TRUE 0.995 15.000 0.309 0.001 Y NA
 4589097 4589098 YPE_2739 YPE_2740     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4589102 4589103 YPE_2745 YPE_2746 tbpA thiP TRUE 0.986 24.000 0.697 0.070 N NA
 4589103 4589104 YPE_2746 YPE_2747 thiP thiQ TRUE 0.987 14.000 0.522 0.015 N NA
 4589106 4589107 YPE_2749 YPE_2750 polB hepA FALSE 0.296 461.000 0.098 0.076 Y NA
 4589108 4589109 YPE_2751 YPE_2752     TRUE 0.992 22.000 1.000 NA   NA
 4589109 4589110 YPE_2752 YPE_2753     TRUE 0.956 50.000 0.615 NA   NA
 4589110 4589111 YPE_2753 YPE_2754     TRUE 0.934 -3.000 0.000 NA   NA
 4589111 4589112 YPE_2754 YPE_2755     FALSE 0.255 120.000 0.000 NA   NA
 4589112 4589113 YPE_2755 YPE_2756     TRUE 0.997 -7.000 0.667 NA   NA
 4589113 4589114 YPE_2756 YPE_2757     TRUE 0.854 6.000 0.000 NA   NA
 4589114 4589115 YPE_2757 YPE_2758     TRUE 0.918 -7.000 0.000 NA   NA
 4589115 4589116 YPE_2758 YPE_2759     TRUE 0.664 26.000 0.000 NA   NA
 4589116 4589117 YPE_2759 YPE_2760     TRUE 0.676 25.000 0.000 NA   NA
 4589117 4589118 YPE_2760 YPE_2761     TRUE 0.789 13.000 0.000 NA   NA
 4589118 4589119 YPE_2761 YPE_2762     FALSE 0.270 104.000 0.000 NA   NA
 4589119 4589120 YPE_2762 YPE_2763     TRUE 0.991 3.000 0.400 NA   NA
 4589120 4589121 YPE_2763 YPE_2764     TRUE 0.995 -7.000 0.533 NA   NA
 4589121 4589122 YPE_2764 YPE_2765     TRUE 0.967 33.000 0.533 NA   NA
 4589122 4589123 YPE_2765 YPE_2766     TRUE 0.938 74.000 0.714 NA   NA
 4589123 4589124 YPE_2766 YPE_2767     TRUE 0.819 163.000 0.500 NA   NA
 4589124 4589125 YPE_2767 YPE_2768     TRUE 0.997 0.000 0.700 NA   NA
 4589125 4589126 YPE_2768 YPE_2769     TRUE 0.996 11.000 1.000 NA   NA
 4589127 4589128 YPE_2770 YPE_2771   rluA FALSE 0.013 1223.000 0.000 NA   NA
 4589130 4589131 YPE_2773 YPE_2774 imp surA TRUE 0.648 68.000 0.182 1.000 N NA
 4589131 4589132 YPE_2774 YPE_2775 surA pdxA TRUE 0.993 -16.000 0.561 1.000 N NA
 4589132 4589133 YPE_2775 YPE_2776 pdxA ksgA TRUE 0.975 -7.000 0.197 1.000 N NA
 4589133 4589134 YPE_2776 YPE_2777 ksgA apaG TRUE 0.770 14.000 0.078 NA N NA
 4589134 4589135 YPE_2777 YPE_2778 apaG apaH TRUE 0.936 17.000 0.267 NA N NA
 4589136 4589137 YPE_2779 YPE_2780     FALSE 0.248 127.000 0.000 NA   NA
 4589137 4589138 YPE_2780 YPE_2781   tnp FALSE 0.020 535.000 0.000 NA   NA
 4589138 4589139 YPE_2781 YPE_2782 tnp folA FALSE 0.054 212.000 0.000 1.000 N NA
 4589139 4589140 YPE_2782 YPE_2783 folA   TRUE 0.410 150.000 0.104 NA   NA
 4589140 4589141 YPE_2783 YPE_2784     TRUE 0.998 -3.000 0.704 NA   NA
 4589143 4589144 YPE_2786 YPE_2787 carB carA TRUE 0.996 16.000 0.345 0.001 Y NA
 4589144 4589145 YPE_2787 YPE_2788 carA dapB FALSE 0.146 473.000 0.034 1.000 Y NA
 4589145 4589146 YPE_2788 YPE_2789 dapB tnp FALSE 0.010 453.000 0.000 1.000 N NA
 4589146 4589147 YPE_2789 YPE_2790 tnp   FALSE 0.170 189.000 0.000 NA   NA
 4589147 4589148 YPE_2790 YPE_2791     TRUE 0.641 29.000 0.000 NA   NA
 4589148 4589149 YPE_2791 YPE_2792   fkpB TRUE 0.994 -19.000 0.626 1.000 N NA
 4589149 4589150 YPE_2792 YPE_2793 fkpB lspA TRUE 0.596 68.000 0.154 1.000 N NA
 4589150 4589151 YPE_2793 YPE_2794 lspA ileS TRUE 0.866 0.000 0.045 1.000 N NA
 4589151 4589152 YPE_2794 YPE_2795 ileS ribF TRUE 0.889 32.000 0.254 1.000 N NA
 4589153 4589154 YPE_2796 YPE_2797   rpsT TRUE 0.703 22.000 0.000 NA   NA
 4589155 4589156 YPE_2798 YPE_2799 nhaR nhaA TRUE 0.660 130.000 0.292 1.000 N NA
 4589156 4589157 YPE_2799 YPE_2800 nhaA dnaJ FALSE 0.025 243.000 0.022 1.000 N NA
 4589157 4589158 YPE_2800 YPE_2801 dnaJ dnaK TRUE 0.943 112.000 0.236 0.002 Y NA
 4589159 4589160 YPE_2802 YPE_2803 yaaH   FALSE 0.064 289.000 0.000 1.000   NA
 4589161 4589162 YPE_2804 YPE_2805   mog FALSE 0.129 128.000 0.039 1.000 N NA
 4589162 4589163 YPE_2805 YPE_2806 mog talB FALSE 0.030 288.000 0.042 1.000 N NA
 4589165 4589166 YPE_2808 YPE_2809 thrC thrB TRUE 0.995 4.000 0.233 1.000 Y NA
 4589166 4589167 YPE_2809 YPE_2810 thrB thrA TRUE 0.992 3.000 0.133 1.000 Y NA
 4589173 4589174 YPE_2816 YPE_2817 trpR slt FALSE 0.200 251.000 0.167 1.000 N NA
 4589175 4589176 YPE_2818 YPE_2819     FALSE 0.034 375.000 0.000 NA   NA
 4589176 4589177 YPE_2819 YPE_2820     TRUE 0.946 21.000 0.259 NA   NA
 4589177 4589178 YPE_2820 YPE_2821     TRUE 0.972 6.000 0.290 1.000 N NA
 4589178 4589179 YPE_2821 YPE_2823   yjjK FALSE 0.181 183.000 0.000 NA   NA
 4589181 4589182 YPE_2824 YPE_2825   nadR FALSE 0.232 157.000 0.000 1.000   NA
 4589182 4589183 YPE_2825 YPE_2826 nadR radA FALSE 0.064 159.000 0.021 1.000 N NA
 4589183 4589184 YPE_2826 YPE_2827 radA serB FALSE 0.109 88.000 0.024 1.000 N NA
 4589186 4589187 YPE_2829 YPE_2830 deoD deoB TRUE 0.762 125.000 0.414 1.000 N NA
 4589187 4589188 YPE_2830 YPE_2831 deoB deoA FALSE 0.242 132.000 0.000 NA   NA
 4589188 4589190 YPE_2831 YPE_2833 deoA deoC FALSE 0.254 121.000 0.000 NA   NA
 4589190 4589191 YPE_2833 YPE_2834 deoC   FALSE 0.119 568.000 0.000 1.000 Y NA
 4589191 4589192 YPE_2834 YPE_2835     FALSE 0.005 535.000 0.027 NA N NA
 4589192 4589193 YPE_2835 YPE_2836     TRUE 0.660 37.000 0.057 NA   NA
 4589193 4589194 YPE_2836 YPE_2837     TRUE 0.730 74.000 0.211 NA   NA
 4589194 4589195 YPE_2837 YPE_2838   osmY TRUE 0.466 167.000 0.140 NA   NA
 4589195 4589196 YPE_2838 YPE_2839 osmY prfC FALSE 0.045 327.000 0.000 NA   NA
 4589196 4589197 YPE_2839 YPE_2840 prfC rimI FALSE 0.181 179.000 0.026 1.000   NA
 4589197 4589198 YPE_2840 YPE_2841 rimI holD TRUE 0.960 -55.000 0.121 1.000   NA
 4589199 4589200 YPE_2842 YPE_2843 rsmC   FALSE 0.075 257.000 0.000 NA   NA
 4589204 4589205 YPE_2847 YPE_2848     TRUE 0.799 147.000 0.429 NA   NA
 4589206 4589207 YPE_2849 YPE_2850     TRUE 0.974 0.000 0.185 NA N NA
 4589207 4589208 YPE_2850 YPE_2851     TRUE 0.481 52.000 0.000 NA   NA
 4589208 4589209 YPE_2851 YPE_2852     TRUE 0.656 27.000 0.000 NA   NA
 4589209 4589210 YPE_2852 YPE_2853     FALSE 0.018 586.000 0.000 NA   NA
 4589210 4589211 YPE_2853 YPE_2854     TRUE 0.922 48.000 0.105 NA Y NA
 4589211 4589212 YPE_2854 YPE_2855   lsrK FALSE 0.009 469.000 0.000 1.000 N NA
 4589212 4589213 YPE_2855 YPE_2856 lsrK lsrR FALSE 0.201 171.000 0.000 NA   NA
 4589215 4589216 YPE_2858 YPE_2859 lsrA lsrC TRUE 1.000 -6.000 0.818 0.012 Y NA
 4589216 4589217 YPE_2859 YPE_2860 lsrC lsrD TRUE 1.000 -3.000 0.788 0.012 Y NA
 4589217 4589218 YPE_2860 YPE_2861 lsrD lsrB TRUE 0.988 66.000 0.844 NA Y NA
 4589218 4589219 YPE_2861 YPE_2862 lsrB lsrF TRUE 0.879 56.000 0.062 NA Y NA
 4589219 4589220 YPE_2862 YPE_2863 lsrF lsrG FALSE 0.400 64.000 0.028 1.000   NA
 4589220 4589221 YPE_2863 YPE_2864 lsrG   FALSE 0.053 301.000 0.000 NA   NA
 4589223 4589224 YPE_2866 YPE_2867 frwC frwB TRUE 0.765 341.000 0.400 0.006 Y NA
 4589224 4589225 YPE_2867 YPE_2868 frwB frwD TRUE 0.847 93.000 0.000 0.006 Y NA
 4589226 4589227 YPE_2869 YPE_2870     TRUE 0.918 2.000 0.000 1.000   NA
 4589228 4589229 YPE_2871 YPE_2872     TRUE 0.990 11.000 0.637 NA   NA
 4589230 4589231 YPE_2873 YPE_2874     TRUE 0.958 -3.000 0.068 NA   NA
 4589233 4589234 YPE_2876 YPE_2877     FALSE 0.262 110.000 0.000 NA   NA
 4589234 4589235 YPE_2877 YPE_2878     TRUE 0.510 50.000 0.000 1.000   NA
 4589235 4589236 YPE_2878 YPE_2879     TRUE 0.789 13.000 0.000 NA   NA
 4589236 4589237 YPE_2879 YPE_2880     FALSE 0.085 247.000 0.000 NA   NA
 4589237 4589238 YPE_2880 YPE_2881     FALSE 0.376 67.000 0.000 NA   NA
 4589238 4589239 YPE_2881 YPE_2882     TRUE 0.999 -3.000 0.759 NA Y NA
 4589240 4589241 YPE_2883 YPE_2884     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4589241 4589242 YPE_2884 YPE_2885     FALSE 0.042 340.000 0.000 NA   NA
 4589243 4589244 YPE_2886 YPE_2887 aidB   FALSE 0.004 408.000 0.005 1.000 N NA
 4589244 4589245 YPE_2887 YPE_2888   rnr TRUE 0.619 119.000 0.147 0.013 N NA
 4589245 4589246 YPE_2888 YPE_2889 rnr   TRUE 0.426 241.000 0.038 NA Y NA
 4589246 4589247 YPE_2889 YPE_2890   purA FALSE 0.004 369.000 0.010 NA N NA
 4589247 4589248 YPE_2890 YPE_2891 purA   FALSE 0.331 100.000 0.051 NA   NA
 4589248 4589249 YPE_2891 YPE_2892   hflC TRUE 0.722 172.000 0.348 NA   NA
 4589249 4589250 YPE_2892 YPE_2893 hflC hflK TRUE 0.999 4.000 0.947 0.013 Y NA
 4589250 4589251 YPE_2893 YPE_2894 hflK hflX TRUE 0.445 241.000 0.184 0.066   NA
 4589251 4589252 YPE_2894 YPE_2895 hflX hfq TRUE 0.578 99.000 0.141 1.000   NA
 4589252 4589253 YPE_2895 YPE_2896 hfq miaA TRUE 0.869 116.000 0.531 1.000   NA
 4589253 4589254 YPE_2896 YPE_2897 miaA mutL TRUE 0.983 -7.000 0.188 0.092 N NA
 4589254 4589255 YPE_2897 YPE_2898 mutL amiB TRUE 0.793 16.000 0.092 1.000 N NA
 4589255 4589256 YPE_2898 YPE_2899 amiB   TRUE 0.432 140.000 0.109 NA   NA
 4589256 4589257 YPE_2899 YPE_2900     TRUE 0.921 11.000 0.118 NA   NA
 4589259 4589260 YPE_2902 YPE_2903   orn FALSE 0.019 558.000 0.000 NA   NA
 4589261 4589262 YPE_2904 YPE_2905   psd FALSE 0.100 325.000 0.095 1.000   NA
 4589262 4589263 YPE_2905 YPE_2906 psd   TRUE 0.840 24.000 0.148 1.000 N NA
 4589264 4589265 YPE_2907 YPE_2908     FALSE 0.215 160.000 0.000 NA   NA
 4589266 4589267 YPE_2909 YPE_2910 frdA frdB TRUE 0.999 -7.000 0.470 0.004 Y NA
 4589267 4589268 YPE_2910 YPE_2911 frdB frdC TRUE 0.996 17.000 0.454 0.004 Y NA
 4589268 4589269 YPE_2911 YPE_2912 frdC frdD TRUE 0.998 17.000 0.787 0.004 Y NA
 4589269 4589270 YPE_2912 YPE_2913 frdD tnp FALSE 0.066 198.000 0.000 1.000 N NA
 4589271 4589272 YPE_2914 YPE_2915 sugE efp FALSE 0.035 247.000 0.000 1.000 N NA
 4589274 4589275 YPE_2917 YPE_2918   mopA FALSE 0.017 636.000 0.000 NA   NA
 4589275 4589276 YPE_2918 YPE_2919 mopA groES TRUE 0.993 47.000 0.631 0.005 Y NA
 4589276 4589277 YPE_2919 YPE_2920 groES   FALSE 0.089 255.000 0.040 1.000   NA
 4589278 4589279 YPE_2921 YPE_2922 aspA dcuA FALSE 0.238 120.000 0.023 1.000   NA
 4589279 4589280 YPE_2922 YPE_2923 dcuA cutA FALSE 0.141 185.000 0.007 1.000   NA
 4589280 4589281 YPE_2923 YPE_2924 cutA dsbD TRUE 0.914 -24.000 0.092 1.000 N NA
 4589282 4589283 YPE_2925 YPE_2926 fdhF hydN TRUE 0.968 23.000 0.231 0.002   NA
 4589283 4589284 YPE_2926 YPE_2927 hydN   TRUE 0.948 23.000 0.222 0.010 N NA
 4589285 4589286 YPE_2928 YPE_2929     FALSE 0.227 145.000 0.000 NA   NA
 4589287 4589288 YPE_2930 YPE_2931     TRUE 0.633 30.000 0.000 NA   NA
 4589292 4589293 YPE_2935 YPE_2936 rhaR rhaS TRUE 0.983 133.000 0.800 0.027 Y NA
 4589293 4589294 YPE_2936 YPE_2937 rhaS   FALSE 0.115 222.000 0.000 NA   NA
 4589295 4589296 YPE_2938 YPE_2939 rhaB rhaA TRUE 0.998 -3.000 0.387 1.000 Y NA
 4589296 4589297 YPE_2939 YPE_2940 rhaA rhaD TRUE 0.990 13.000 0.247 1.000 Y NA
 4589297 4589298 YPE_2940 YPE_2941 rhaD   TRUE 0.548 67.000 0.041 0.005 N NA
 4589298 4589299 YPE_2941 YPE_2942     TRUE 0.842 14.000 0.063 NA   NA
 4589302 4589303 YPE_2945 YPE_2946   tyrB FALSE 0.020 527.000 0.000 NA   NA
 4589303 4589304 YPE_2946 YPE_2947 tyrB alr FALSE 0.399 186.000 0.181 1.000 N NA
 4589304 4589305 YPE_2947 YPE_2948 alr dnaB TRUE 0.726 97.000 0.317 1.000 N NA
 4589307 4589308 YPE_2950 YPE_2951 pspG dusA FALSE 0.036 507.000 0.070 NA   NA
 4589310 4589311 YPE_2953 YPE_2954 lexA dgkA TRUE 0.426 125.000 0.141 1.000 N NA
 4589313 4589314 YPE_2956 YPE_2957 ubiA ubiC TRUE 0.869 166.000 0.248 NA Y NA
 4589316 4589317 YPE_2959 YPE_2960     FALSE 0.044 332.000 0.000 NA   NA
 4589317 4589318 YPE_2960 YPE_2961     FALSE 0.027 423.000 0.000 NA   NA
 4589318 4589319 YPE_2961 YPE_2962     FALSE 0.014 1112.000 0.000 NA   NA
 4589319 4589320 YPE_2962 YPE_2963     TRUE 0.837 8.000 0.000 NA   NA
 4589320 4589321 YPE_2963 YPE_2964     TRUE 0.974 72.000 0.571 NA Y NA
 4589321 4589322 YPE_2964 YPE_2965     FALSE 0.081 251.000 0.000 NA   NA
 4589322 4589323 YPE_2965 YPE_2966   terE FALSE 0.016 713.000 0.000 NA   NA
 4589323 4589324 YPE_2966 YPE_2967 terE terD TRUE 0.928 184.000 0.310 0.003 Y NA
 4589324 4589325 YPE_2967 YPE_2968 terD terC FALSE 0.209 64.000 0.000 1.000 N NA
 4589325 4589326 YPE_2968 YPE_2969 terC terB TRUE 0.942 22.000 0.000 NA Y NA
 4589326 4589327 YPE_2969 YPE_2970 terB terA TRUE 0.887 33.000 0.200 NA   NA
 4589327 4589328 YPE_2970 YPE_2971 terA terZ TRUE 0.547 132.000 0.054 0.003   NA
 4589329 4589330 YPE_2972 YPE_2973     TRUE 0.959 12.000 0.217 1.000   NA
 4589330 4589331 YPE_2973 YPE_2974     TRUE 0.971 -7.000 0.126 NA   NA
 4589331 4589332 YPE_2974 YPE_2975     TRUE 0.990 -7.000 0.296 NA   NA
 4589332 4589333 YPE_2975 YPE_2976     TRUE 0.994 0.000 0.420 NA   NA
 4589333 4589334 YPE_2976 YPE_2977     FALSE 0.030 397.000 0.000 NA   NA
 4589334 4589335 YPE_2977 YPE_2978     FALSE 0.047 315.000 0.000 NA   NA
 4589335 4589336 YPE_2978 YPE_2979     FALSE 0.017 341.000 0.000 1.000 N NA
 4589336 4589337 YPE_2979 YPE_2980     TRUE 0.968 -3.000 0.135 1.000 N NA
 4589337 4589338 YPE_2980 YPE_2981     TRUE 0.502 34.000 0.054 1.000 N NA
 4589338 4589339 YPE_2981 YPE_2982   hmuR FALSE 0.011 415.000 0.000 1.000 N NA
 4589339 4589340 YPE_2982 YPE_2983 hmuR hmuS TRUE 0.756 119.000 0.064 1.000 Y NA
 4589340 4589341 YPE_2983 YPE_2984 hmuS hmuT TRUE 0.998 -3.000 0.384 1.000 Y NA
 4589341 4589342 YPE_2984 YPE_2985 hmuT hmuU TRUE 0.999 -3.000 0.852 1.000 Y NA
 4589342 4589343 YPE_2985 YPE_2986 hmuU hmuV TRUE 0.996 -7.000 0.220 1.000 Y NA
 4589344 4589345 YPE_2987 YPE_2988     TRUE 0.887 46.000 0.043 NA Y NA
 4589347 4589348 YPE_2990 YPE_2991     TRUE 0.998 -3.000 0.844 NA   NA
 4589348 4589349 YPE_2991 YPE_2992     FALSE 0.038 383.000 0.045 NA   NA
 4589349 4589350 YPE_2992 YPE_2993     TRUE 0.998 -10.000 0.406 0.066 Y NA
 4589350 4589351 YPE_2993 YPE_2994     TRUE 0.999 2.000 0.516 0.066 Y NA
 4589351 4589352 YPE_2994 YPE_2995     TRUE 0.997 -3.000 0.136 0.011 Y NA
 4589352 4589353 YPE_2995 YPE_2996     TRUE 0.843 127.000 0.154 1.000 Y NA
 4589353 4589354 YPE_2996 YPE_2997     TRUE 0.941 20.000 0.231 NA   NA
 4589354 4589355 YPE_2997 YPE_2998     TRUE 0.932 164.000 1.000 NA   NA
 4589355 4589356 YPE_2998 YPE_2999     TRUE 0.984 -3.000 0.176 NA   NA
 4589356 4589357 YPE_2999 YPE_3000     TRUE 0.999 -13.000 0.647 0.008 Y NA
 4589357 4589358 YPE_3000 YPE_3001     TRUE 0.918 -7.000 0.000 NA   NA
 4589358 4589359 YPE_3001 YPE_3002     TRUE 0.996 -3.000 0.538 NA   NA
 4589359 4589360 YPE_3002 YPE_3003     TRUE 0.891 175.000 0.786 NA   NA
 4589360 4589361 YPE_3003 YPE_3004     TRUE 0.997 -3.000 0.407 0.011   NA
 4589361 4589362 YPE_3004 YPE_3005     TRUE 0.833 98.000 0.407 NA   NA
 4589362 4589363 YPE_3005 YPE_3006     TRUE 0.997 -3.000 0.650 NA   NA
 4589363 4589364 YPE_3006 YPE_3007     TRUE 0.946 10.000 0.150 1.000   NA
 4589364 4589365 YPE_3007 YPE_3008     FALSE 0.208 174.000 0.000 1.000   NA
 4589365 4589366 YPE_3008 YPE_3009     TRUE 0.904 19.000 0.146 NA   NA
 4589366 4589367 YPE_3009 YPE_3010     TRUE 0.987 2.000 0.268 NA   NA
 4589368 4589369 YPE_3011 YPE_3012     TRUE 0.998 13.000 0.688 0.009 Y NA
 4589371 4589372 YPE_3014 YPE_3015 acs   TRUE 0.745 57.000 0.147 NA   NA
 4589372 4589373 YPE_3015 YPE_3016   actP TRUE 0.998 -3.000 0.733 NA   NA
 4589376 4589377 YPE_3019 YPE_3020     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4589378 4589379 YPE_3021 YPE_3022 aroE   TRUE 0.846 9.000 0.087 NA N NA
 4589379 4589380 YPE_3022 YPE_3023     TRUE 0.955 2.000 0.137 NA N NA
 4589380 4589381 YPE_3023 YPE_3024   smg TRUE 0.920 41.000 0.331 NA   NA
 4589381 4589382 YPE_3024 YPE_3025 smg smf TRUE 0.960 -28.000 0.124 NA   NA
 4589383 4589384 YPE_3026 YPE_3027 def fmt TRUE 0.967 25.000 0.058 0.017 Y NA
 4589384 4589385 YPE_3027 YPE_3028 fmt rsmB TRUE 0.930 94.000 0.305 1.000 Y NA
 4589385 4589386 YPE_3028 YPE_3029 rsmB trkA FALSE 0.113 56.000 0.007 1.000 N NA
 4589386 4589387 YPE_3029 YPE_3030 trkA mscL FALSE 0.044 139.000 0.007 1.000 N NA
 4589388 4589389 YPE_3031 YPE_3032     TRUE 0.711 88.000 0.219 NA   NA
 4589389 4589390 YPE_3032 YPE_3033   rplQ FALSE 0.004 447.000 0.005 1.000 N NA
 4589390 4589391 YPE_3033 YPE_3034 rplQ rpoA TRUE 0.975 41.000 0.873 1.000 N NA
 4589391 4589392 YPE_3034 YPE_3035 rpoA rpsD TRUE 0.967 26.000 0.549 1.000 N NA
 4589392 4589393 YPE_3035 YPE_3036 rpsD rpsK TRUE 0.994 31.000 0.509 0.015 Y NA
 4589393 4589394 YPE_3036 YPE_3037 rpsK rpsM TRUE 0.998 17.000 0.810 0.011 Y NA
 4589394 4589395 YPE_3037 YPE_3038 rpsM rpmJ TRUE 0.840 148.000 0.086 0.011 Y NA
 4589395 4589396 YPE_3038 YPE_3039 rpmJ secY FALSE 0.384 34.000 0.036 1.000 N NA
 4589396 4589397 YPE_3039 YPE_3040 secY rplO TRUE 0.992 8.000 0.730 1.000 N NA
 4589397 4589398 YPE_3040 YPE_3041 rplO rpmD TRUE 0.999 4.000 0.653 0.002 Y NA
 4589398 4589399 YPE_3041 YPE_3042 rpmD rpsE TRUE 0.999 3.000 0.789 0.015 Y NA
 4589399 4589400 YPE_3042 YPE_3043 rpsE rplR TRUE 0.998 15.000 0.814 0.015 Y NA
 4589400 4589401 YPE_3043 YPE_3044 rplR rplF TRUE 0.999 10.000 0.815 0.011 Y NA
 4589401 4589402 YPE_3044 YPE_3045 rplF rpsH TRUE 0.998 15.000 0.808 0.011 Y NA
 4589402 4589403 YPE_3045 YPE_3046 rpsH rpsN TRUE 0.993 34.000 0.473 0.011 Y NA
 4589403 4589404 YPE_3046 YPE_3047 rpsN rplE TRUE 0.997 14.000 0.496 0.011 Y NA
 4589404 4589405 YPE_3047 YPE_3048 rplE rplX TRUE 0.998 15.000 0.758 0.011 Y NA
 4589405 4589406 YPE_3048 YPE_3049 rplX rplN TRUE 0.999 11.000 0.810 0.015 Y NA
 4589406 4589407 YPE_3049 YPE_3050 rplN rpsQ TRUE 0.977 181.000 0.791 0.015 Y NA
 4589407 4589408 YPE_3050 YPE_3051 rpsQ rpmC TRUE 1.000 0.000 0.828 0.011 Y NA
 4589408 4589409 YPE_3051 YPE_3052 rpmC rplP TRUE 1.000 0.000 0.802 0.011 Y NA
 4589409 4589410 YPE_3052 YPE_3053 rplP rpsC TRUE 0.999 13.000 0.828 0.015 Y NA
 4589410 4589411 YPE_3053 YPE_3054 rpsC rplV TRUE 0.998 18.000 0.719 0.015 Y NA
 4589411 4589412 YPE_3054 YPE_3055 rplV rpsS TRUE 0.998 15.000 0.769 0.015 Y NA
 4589412 4589413 YPE_3055 YPE_3056 rpsS rplB TRUE 0.998 15.000 0.820 0.015 Y NA
 4589413 4589414 YPE_3056 YPE_3057 rplB rplW TRUE 0.998 17.000 0.849 0.013 Y NA
 4589414 4589415 YPE_3057 YPE_3058 rplW rplD TRUE 0.999 -3.000 0.513 0.011 Y NA
 4589415 4589416 YPE_3058 YPE_3059 rplD rplC TRUE 0.996 17.000 0.486 0.011 Y NA
 4589416 4589417 YPE_3059 YPE_3060 rplC rpsJ TRUE 0.988 33.000 0.307 0.015 Y NA
 4589417 4589418 YPE_3060 YPE_3061 rpsJ bfr FALSE 0.011 414.000 0.000 1.000 N NA
 4589418 4589419 YPE_3061 YPE_3062 bfr bfd TRUE 0.742 79.000 0.013 NA Y NA
 4589419 4589420 YPE_3062 YPE_3063 bfd tnp FALSE 0.064 188.000 0.000 NA N NA
 4589420 4589421 YPE_3063 YPE_3064 tnp tufA FALSE 0.061 203.000 0.000 1.000 N NA
 4589421 4589422 YPE_3064 YPE_3065 tufA fusA TRUE 0.865 73.000 0.005 0.002 Y NA
 4589422 4589423 YPE_3065 YPE_3066 fusA rpsG TRUE 0.968 94.000 0.579 1.000 Y NA
 4589423 4589424 YPE_3066 YPE_3067 rpsG rpsL TRUE 0.983 97.000 0.620 0.002 Y NA
 4589424 4589425 YPE_3067 YPE_3068 rpsL   FALSE 0.169 138.000 0.058 NA N NA
 4589425 4589426 YPE_3068 YPE_3069     TRUE 0.997 20.000 0.804 NA Y NA
 4589426 4589427 YPE_3069 YPE_3070   yheN TRUE 0.999 0.000 0.790 NA Y NA
 4589427 4589428 YPE_3070 YPE_3071 yheN yheO TRUE 0.986 0.000 0.220 NA   NA
 4589428 4589429 YPE_3071 YPE_3072 yheO fkpA TRUE 0.476 242.000 0.310 NA   NA
 4589431 4589432 YPE_3074 YPE_3075 slyD yheV FALSE 0.392 95.000 0.060 1.000   NA
 4589432 4589433 YPE_3075 YPE_3076 yheV kefB TRUE 0.975 16.000 0.400 1.000   NA
 4589433 4589434 YPE_3076 YPE_3077 kefB kefG TRUE 0.997 4.000 0.927 1.000   NA
 4589435 4589437 YPE_3079 YPE_3080 yheS   FALSE 0.239 135.000 0.000 NA   NA
 4589437 4589438 YPE_3080 YPE_3081     FALSE 0.354 93.000 0.053 NA   NA
 4589439 4589440 YPE_3082 YPE_3083 tauD tauC TRUE 0.982 -3.000 0.214 1.000 N NA
 4589440 4589441 YPE_3083 YPE_3084 tauC tauB TRUE 0.999 -3.000 0.728 1.000 Y NA
 4589441 4589442 YPE_3084 YPE_3085 tauB tauA TRUE 0.971 9.000 0.023 1.000 Y NA
 4589442 4589443 YPE_3085 YPE_3086 tauA   FALSE 0.061 203.000 0.000 1.000 N NA
 4589444 4589445 YPE_3087 YPE_3088 yheT yheU TRUE 0.988 -3.000 0.222 NA   NA
 4589445 4589446 YPE_3088 YPE_3089 yheU prkB TRUE 0.714 149.000 0.303 NA   NA
 4589447 4589448 YPE_3090 YPE_3091   yhfA FALSE 0.346 72.000 0.000 NA   NA
 4589449 4589450 YPE_3092 YPE_3093 crp yhfK TRUE 0.544 86.000 0.111 1.000   NA
 4589451 4589452 YPE_3094 YPE_3095 argD pabA TRUE 0.772 133.000 0.088 1.000 Y NA
 4589452 4589453 YPE_3095 YPE_3096 pabA   FALSE 0.071 243.000 0.007 1.000   NA
 4589453 4589454 YPE_3096 YPE_3097   ppiA FALSE 0.049 326.000 0.000 1.000   NA
 4589455 4589456 YPE_3098 YPE_3099     FALSE 0.324 249.000 0.267 1.000 N NA
 4589459 4589461 YPE_3166C YPE_3102 codA   FALSE 0.346 72.000 0.000 NA   NA
 4589461 4589462 YPE_3102 YPE_3103     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4589462 4589463 YPE_3103 YPE_3169N     FALSE 0.304 87.000 0.000 NA   NA
 4589463 4589465 YPE_3169N YPE_3104     TRUE 0.918 -7.000 0.000 NA   NA
 4589466 4589467 YPE_3105 YPE_3106     FALSE 0.193 175.000 0.000 NA   NA
 4589467 4589468 YPE_3106 YPE_3107     FALSE 0.051 306.000 0.000 NA   NA
 4589469 4589470 YPE_3108 YPE_3109 rraA menA TRUE 0.828 142.000 0.158 NA Y NA
 4589470 4589471 YPE_3109 YPE_3110 menA hslU FALSE 0.063 236.000 0.051 1.000 N NA
 4589471 4589472 YPE_3110 YPE_3111 hslU hslV TRUE 0.984 71.000 0.752 1.000 Y NA
 4589472 4589473 YPE_3111 YPE_3112 hslV ftsN FALSE 0.392 100.000 0.122 NA N NA
 4589473 4589474 YPE_3112 YPE_3113 ftsN cytR TRUE 0.741 66.000 0.245 NA N NA
 4589474 4589475 YPE_3113 YPE_3114 cytR priA FALSE 0.007 353.000 0.013 1.000 N NA
 4589476 4589477 YPE_3115 YPE_3116 rpmE   FALSE 0.014 1049.000 0.000 NA   NA
 4589479 4589481 YPE_3119 YPE_3120 metB metL TRUE 0.900 3.000 0.000 NA   NA
 4589481 4589482 YPE_3120 YPE_3121 metL metF TRUE 0.420 233.000 0.017 1.000 Y NA
 4589483 4589484 YPE_3122 YPE_3123     TRUE 0.939 54.000 0.167 1.000 Y NA
 4589484 4589485 YPE_3123 YPE_3124   glpR FALSE 0.071 193.000 0.000 1.000 N NA
 4589485 4589486 YPE_3124 YPE_3125 glpR glpG TRUE 0.880 35.000 0.190 1.000   NA
 4589486 4589487 YPE_3125 YPE_3126 glpG glpE TRUE 0.973 18.000 0.405 1.000   NA
 4589487 4589488 YPE_3126 YPE_3127 glpE malT FALSE 0.014 375.000 0.000 1.000 N NA
 4589489 4589491 YPE_3129 YPE_3130 malP malQ TRUE 0.789 13.000 0.000 NA   NA
 4589492 4589493 YPE_3131 YPE_3132 gntY gntX TRUE 0.564 60.000 0.066 1.000   NA
 4589494 4589495 YPE_3133 YPE_3134 bioH   FALSE 0.154 170.000 0.010 NA   NA
 4589496 4589497 YPE_3135 YPE_3136   feoB TRUE 0.954 36.000 0.455 NA   NA
 4589497 4589498 YPE_3136 YPE_3137 feoB feoA TRUE 0.886 92.000 0.177 1.000 Y NA
 4589498 4589499 YPE_3137 YPE_3138 feoA yhgF FALSE 0.008 524.000 0.000 1.000 N NA
 4589500 4589501 YPE_3139 YPE_3140 greB ompR TRUE 0.815 136.000 0.067 0.064 Y NA
 4589501 4589502 YPE_3140 YPE_3141 ompR envZ TRUE 0.999 -3.000 0.584 1.000 Y NA
 4589503 4589504 YPE_3142 YPE_3143 pckA hslO FALSE 0.094 197.000 0.048 1.000 N NA
 4589504 4589505 YPE_3143 YPE_3144 hslO hslR FALSE 0.372 163.000 0.140 1.000 N NA
 4589505 4589506 YPE_3144 YPE_3145 hslR yrfG TRUE 0.729 29.000 0.056 1.000   NA
 4589506 4589507 YPE_3145 YPE_3146 yrfG yrfF TRUE 0.469 144.000 0.122 1.000   NA
 4589508 4589509 YPE_3147 YPE_3148   nudE FALSE 0.259 113.000 0.000 NA   NA
 4589511 4589512 YPE_3150 YPE_3151     TRUE 0.998 0.000 0.870 NA   NA
 4589512 4589513 YPE_3151 YPE_3152     TRUE 0.980 -7.000 0.174 NA   NA
 4589513 4589514 YPE_3152 YPE_3153     TRUE 0.889 26.000 0.167 NA   NA
 4589514 4589515 YPE_3153 YPE_3154   hofQ FALSE 0.046 427.000 0.072 NA   NA
 4589515 4589516 YPE_3154 YPE_3155 hofQ aroK FALSE 0.283 349.000 0.319 1.000   NA
 4589516 4589517 YPE_3155 YPE_3156 aroK aroB TRUE 0.946 57.000 0.208 1.000 Y NA
 4589517 4589518 YPE_3156 YPE_3157 aroB damX FALSE 0.065 254.000 0.022 NA   NA
 4589518 4589519 YPE_3157 YPE_3158 damX dam TRUE 0.740 84.000 0.234 NA   NA
 4589519 4589520 YPE_3158 YPE_3159 dam rpe FALSE 0.034 303.000 0.053 1.000 N NA
 4589520 4589521 YPE_3159 YPE_3160 rpe gph TRUE 0.938 -7.000 0.050 1.000   NA
 4589521 4589522 YPE_3160 YPE_3161 gph trpS TRUE 0.967 2.000 0.118 1.000   NA
 4589523 4589524 YPE_3162 YPE_3163 cysG nirC FALSE 0.266 88.000 0.065 1.000 N NA
 4589524 4589525 YPE_3163 YPE_3164 nirC nirD TRUE 0.832 203.000 0.283 1.000 Y NA
 4589525 4589526 YPE_3164 YPE_3165 nirD nirB TRUE 0.999 -3.000 0.829 0.000 N NA
 4589527 4589529 YPE_3166N YPE_3167 codA   FALSE 0.304 87.000 0.000 NA   NA
 4589529 4589530 YPE_3167 YPE_3168     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4589530 4589531 YPE_3168 YPE_3169C     FALSE 0.339 73.000 0.000 NA   NA
 4589531 4589533 YPE_3169C YPE_3170   tnp FALSE 0.033 378.000 0.000 NA   NA
 4589535 4589536 YPE_3172 YPE_3173   glpF TRUE 0.823 10.000 0.000 NA   NA
 4589536 4589537 YPE_3173 YPE_3175 glpF glpK FALSE 0.191 177.000 0.000 NA   NA
 4589537 4589539 YPE_3175 YPE_3176 glpK glpX TRUE 0.916 1.000 0.000 NA   NA
 4589539 4589541 YPE_3176 YPE_3178 glpX fpr FALSE 0.219 155.000 0.000 NA   NA
 4589543 4589544 YPE_3180 YPE_3181 yiiQ tpiA FALSE 0.319 129.000 0.058 NA   NA
 4589546 4589547 YPE_3183 YPE_3184     TRUE 0.993 -3.000 0.353 NA   NA
 4589547 4589548 YPE_3184 YPE_3185     FALSE 0.197 66.000 0.000 1.000 N NA
 4589548 4589549 YPE_3185 YPE_3186     TRUE 0.850 76.000 0.000 0.053 Y NA
 4589550 4589551 YPE_3187 YPE_3188 sbp pfkA FALSE 0.072 221.000 0.049 1.000 N NA
 4589551 4589552 YPE_3188 YPE_3189 pfkA fieF FALSE 0.060 218.000 0.040 1.000 N NA
 4589552 4589553 YPE_3189 YPE_3190 fieF   FALSE 0.019 562.000 0.000 NA   NA
 4589553 4589554 YPE_3190 YPE_3191   cpxP FALSE 0.016 678.000 0.000 NA   NA
 4589555 4589556 YPE_3192 YPE_3193 cpxR cpxA TRUE 0.999 -3.000 0.791 1.000 Y NA
 4589559 4589560 YPE_3196 YPE_3197 cysE   FALSE 0.385 66.000 0.000 NA   NA
 4589560 4589561 YPE_3197 YPE_3198   gpsA TRUE 0.432 60.000 0.000 NA   NA
 4589561 4589562 YPE_3198 YPE_3199 gpsA secB TRUE 0.978 0.000 0.206 1.000 N NA
 4589562 4589563 YPE_3199 YPE_3200 secB grxC FALSE 0.160 88.000 0.038 1.000 N NA
 4589563 4589564 YPE_3200 YPE_3201 grxC yibN FALSE 0.163 119.000 0.048 1.000 N NA
 4589565 4589566 YPE_3202 YPE_3203 gpmI envC TRUE 0.842 28.000 0.170 1.000 N NA
 4589566 4589567 YPE_3203 YPE_3205 envC yibQ TRUE 0.688 24.000 0.000 NA   NA
 4589569 4589570 YPE_3206 YPE_3207 tdh kbl TRUE 0.985 10.000 0.547 1.000 N NA
 4589571 4589572 YPE_3208 YPE_3209 rfaD rfaF TRUE 0.962 31.000 0.146 1.000 Y NA
 4589572 4589573 YPE_3209 YPE_3210 rfaF rfaC TRUE 0.998 0.000 0.205 0.001 Y NA
 4589573 4589574 YPE_3210 YPE_3211 rfaC kdtA FALSE 0.164 420.000 0.028 1.000 Y NA
 4589574 4589575 YPE_3211 YPE_3212 kdtA kdtX TRUE 0.991 1.000 0.083 NA Y NA
 4589575 4589576 YPE_3212 YPE_3213 kdtX coaD TRUE 0.747 -3.000 0.023 NA N NA
 4589577 4589578 YPE_3214 YPE_3215 mutM rpmG FALSE 0.151 83.000 0.034 1.000 N NA
 4589578 4589579 YPE_3215 YPE_3216 rpmG rpmB TRUE 0.996 12.000 0.332 0.011 Y NA
 4589579 4589580 YPE_3216 YPE_3217 rpmB radC FALSE 0.009 263.000 0.002 1.000 N NA
 4589581 4589582 YPE_3218 YPE_3219 dfp dut TRUE 0.969 -19.000 0.201 1.000 N NA
 4589582 4589583 YPE_3219 YPE_3220 dut ttk FALSE 0.207 122.000 0.060 1.000 N NA
 4589584 4589585 YPE_3221 YPE_3222 pyrE rph FALSE 0.288 167.000 0.108 1.000 N NA
 4589586 4589587 YPE_3223 YPE_3224 yicC yicG FALSE 0.030 403.000 0.000 NA   NA
 4589589 4589590 YPE_3226 YPE_3227 gmk rpoZ TRUE 0.910 55.000 0.471 1.000 N NA
 4589590 4589591 YPE_3227 YPE_3228 rpoZ spoT TRUE 0.988 20.000 0.291 1.000 Y NA
 4589591 4589592 YPE_3228 YPE_3229 spoT spoU TRUE 0.888 6.000 0.095 1.000 N NA
 4589592 4589593 YPE_3229 YPE_3230 spoU recG TRUE 0.919 1.000 0.076 1.000 N NA
 4589595 4589596 YPE_3232 YPE_3233 yicE yicH TRUE 0.672 148.000 0.257 NA   NA
 4589598 4589599 YPE_3235 YPE_3236     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4589600 4589601 YPE_3237 YPE_3238 dtd rbn TRUE 0.905 7.000 0.069 1.000   NA
 4589601 4589602 YPE_3238 YPE_3239 rbn yihX FALSE 0.292 97.000 0.031 1.000   NA
 4589602 4589603 YPE_3239 YPE_3240 yihX bipA FALSE 0.036 322.000 0.007 1.000   NA
 4589604 4589605 YPE_3241 YPE_3242   glnA FALSE 0.123 186.000 0.003 NA   NA
 4589605 4589606 YPE_3242 YPE_3243 glnA glnl FALSE 0.052 253.000 0.053 1.000 N NA
 4589606 4589607 YPE_3243 YPE_3244 glnl glnG TRUE 0.998 8.000 0.587 0.064 Y NA
 4589608 4589609 YPE_3245 YPE_3246 hemN yihI FALSE 0.354 183.000 0.107 NA   NA
 4589609 4589610 YPE_3246 YPE_3247 yihI csrC FALSE 0.227 145.000 0.000 NA   NA
 4589612 4589613 YPE_3249 YPE_3250 tnp spf FALSE 0.228 144.000 0.000 NA   NA
 4589613 4589614 YPE_3250 YPE_3251 spf polA FALSE 0.216 159.000 0.000 NA   NA
 4589614 4589615 YPE_3251 YPE_3252 polA dsbA FALSE 0.024 492.000 0.000 1.000   NA
 4589615 4589616 YPE_3252 YPE_3253 dsbA yihE TRUE 0.824 28.000 0.111 NA   NA
 4589616 4589617 YPE_3253 YPE_3254 yihE yihD TRUE 0.534 80.000 0.106 NA   NA
 4589618 4589619 YPE_3255 YPE_3256 mobA mobB TRUE 0.995 0.000 0.064 0.002 Y NA
 4589620 4589621 YPE_3257 YPE_3258     FALSE 0.021 501.000 0.000 NA   NA
 4589621 4589622 YPE_3258 YPE_3259     FALSE 0.265 108.000 0.000 NA   NA
 4589622 4589623 YPE_3259 YPE_3260     FALSE 0.079 253.000 0.000 NA   NA
 4589623 4589624 YPE_3260 YPE_3261     FALSE 0.235 137.000 0.000 NA   NA
 4589625 4589626 YPE_3262 YPE_3263 yieP hsrA TRUE 0.613 80.000 0.133 1.000   NA
 4589627 4589628 YPE_3264 YPE_3265 rbsK rbsD TRUE 0.855 51.000 0.010 1.000 Y NA
 4589628 4589629 YPE_3265 YPE_3266 rbsD kup FALSE 0.027 205.000 0.010 1.000 N NA
 4589630 4589631 YPE_3267 YPE_3268 ravA viaA TRUE 0.991 4.000 0.443 NA   NA
 4589633 4589634 YPE_3270 YPE_3271 asnC mioC TRUE 0.529 93.000 0.165 1.000 N NA
 4589634 4589635 YPE_3271 YPE_3272 mioC gidA FALSE 0.013 381.000 0.000 1.000 N NA
 4589635 4589636 YPE_3272 YPE_3273 gidA gidB TRUE 0.770 146.000 0.466 1.000 N NA
 4589636 4589637 YPE_3273 YPE_3274 gidB atpI FALSE 0.002 667.000 0.005 1.000 N NA
 4589637 4589638 YPE_3274 YPE_3275 atpI atpB TRUE 0.985 40.000 0.291 0.004 Y NA
 4589638 4589639 YPE_3275 YPE_3276 atpB atpE TRUE 0.991 50.000 0.557 0.004 Y NA
 4589639 4589640 YPE_3276 YPE_3277 atpE atpF TRUE 0.991 62.000 0.666 0.003 Y NA
 4589640 4589641 YPE_3277 YPE_3278 atpF atpH TRUE 0.993 15.000 0.242 0.003 Y NA
 4589641 4589642 YPE_3278 YPE_3279 atpH atpA TRUE 0.999 15.000 0.864 0.003 Y NA
 4589642 4589643 YPE_3279 YPE_3280 atpA atpG TRUE 0.994 62.000 0.846 0.003 Y NA
 4589643 4589644 YPE_3280 YPE_3281 atpG atpD TRUE 0.981 156.000 0.724 0.003 Y NA
 4589644 4589645 YPE_3281 YPE_3282 atpD atpC TRUE 0.998 22.000 0.837 0.003 Y NA
 4589645 4589646 YPE_3282 YPE_3283 atpC glmU FALSE 0.015 621.000 0.067 1.000 N NA
 4589646 4589647 YPE_3283 YPE_3284 glmU glmS TRUE 0.596 201.000 0.055 1.000 Y NA
 4589647 4589648 YPE_3284 YPE_3285 glmS pstS FALSE 0.009 483.000 0.000 1.000 N NA
 4589648 4589649 YPE_3285 YPE_3286 pstS pstC TRUE 0.774 229.000 0.145 0.002 Y NA
 4589649 4589650 YPE_3286 YPE_3287 pstC pstA TRUE 0.999 2.000 0.537 0.002 Y NA
 4589650 4589651 YPE_3287 YPE_3288 pstA pstB TRUE 0.982 81.000 0.526 0.002 Y NA
 4589651 4589652 YPE_3288 YPE_3289 pstB phoU TRUE 0.934 88.000 0.317 NA Y NA
 4589652 4589653 YPE_3289 YPE_3290 phoU   FALSE 0.019 296.000 0.000 NA N NA
 4589653 4589654 YPE_3290 YPE_3291     FALSE 0.043 220.000 0.000 NA N NA
 4589654 4589655 YPE_3291 YPE_3292     TRUE 0.903 183.000 0.263 0.053 Y NA
 4589655 4589656 YPE_3292 YPE_3293     TRUE 0.998 2.000 0.282 0.015 Y NA
 4589658 4589659 YPE_3295 YPE_3296 yieG   FALSE 0.019 545.000 0.000 NA   NA
 4589659 4589660 YPE_3296 YPE_3297     FALSE 0.369 68.000 0.000 NA   NA
 4589661 4589662 YPE_3298 YPE_3299   thdF FALSE 0.134 186.000 0.003 1.000   NA
 4589662 4589663 YPE_3299 YPE_3300 thdF   TRUE 0.739 143.000 0.221 0.064   NA
 4589663 4589664 YPE_3300 YPE_3301   rnpA FALSE 0.158 224.000 0.105 1.000 N NA
 4589664 4589665 YPE_3301 YPE_3302 rnpA rpmH TRUE 0.995 19.000 0.787 0.000   NA
 4589665 4589666 YPE_3302 YPE_3303 rpmH   FALSE 0.033 377.000 0.000 NA   NA
 4589667 4589668 YPE_3304 YPE_3305 dnaA dnaN TRUE 0.996 5.000 0.328 1.000 Y NA
 4589668 4589669 YPE_3305 YPE_3306 dnaN recF TRUE 0.894 173.000 0.318 1.000 Y NA
 4589669 4589670 YPE_3306 YPE_3307 recF gyrB TRUE 0.992 20.000 0.249 0.003 Y NA
 4589670 4589671 YPE_3307 YPE_3308 gyrB   FALSE 0.191 216.000 0.003 0.090   NA
 4589672 4589673 YPE_3309 YPE_3310     TRUE 0.939 54.000 0.167 1.000 Y NA
 4589673 4589674 YPE_3310 YPE_3311     FALSE 0.057 207.000 0.000 1.000 N NA
 4589674 4589675 YPE_3311 YPE_3312   tdcB TRUE 0.998 -6.000 0.316 1.000 Y NA
 4589679 4589680 YPE_3316 YPE_3317 ibpA ibpB TRUE 0.425 281.000 0.099 NA Y NA
 4589680 4589681 YPE_3317 YPE_3318 ibpB   FALSE 0.056 373.000 0.069 NA   NA
 4589682 4589683 YPE_3319 YPE_3320 avtA   FALSE 0.025 455.000 0.000 NA   NA
 4589683 4589684 YPE_3320 YPE_3321   malS FALSE 0.028 415.000 0.000 NA   NA
 4589684 4589685 YPE_3321 YPE_3322 malS   FALSE 0.024 289.000 0.000 1.000 N NA
 4589687 4589688 YPE_3324 YPE_3325     FALSE 0.040 358.000 0.000 1.000   NA
 4589688 4589689 YPE_3325 YPE_3326   tag TRUE 0.933 -3.000 0.028 1.000   NA
 4589690 4589691 YPE_3327 YPE_3328 glyQ glyS TRUE 0.999 10.000 0.651 0.000 Y NA
 4589691 4589692 YPE_3328 YPE_3329 glyS   FALSE 0.016 467.000 0.003 NA   NA
 4589692 4589693 YPE_3329 YPE_3330   mtlA FALSE 0.017 650.000 0.000 NA   NA
 4589693 4589694 YPE_3330 YPE_3331 mtlA mtlD TRUE 0.906 137.000 0.292 1.000 Y NA
 4589694 4589695 YPE_3331 YPE_3332 mtlD mtlR FALSE 0.396 207.000 0.230 NA N NA
 4589696 4589697 YPE_3333 YPE_3334     FALSE 0.019 556.000 0.000 NA   NA
 4589697 4589698 YPE_3334 YPE_3335   tsr FALSE 0.168 190.000 0.000 NA   NA
 4589698 4589699 YPE_3335 YPE_3336 tsr sodA FALSE 0.016 344.000 0.000 1.000 N NA
 4589699 4589700 YPE_3336 YPE_3337 sodA fdhD FALSE 0.009 436.000 0.029 1.000 N NA
 4589701 4589703 YPE_3338 YPE_3339 fdoG fdoH TRUE 0.789 13.000 0.000 NA   NA
 4589703 4589704 YPE_3339 YPE_3340 fdoH fdoI TRUE 1.000 -3.000 0.944 0.000 Y NA
 4589704 4589705 YPE_3340 YPE_3341 fdoI fdhE TRUE 0.973 0.000 0.182 NA N NA
 4589705 4589706 YPE_3341 YPE_3342 fdhE selA FALSE 0.184 184.000 0.083 NA N NA
 4589706 4589707 YPE_3342 YPE_3344 selA selB TRUE 0.934 -3.000 0.000 NA   NA
 4589712 4589713 YPE_3347 YPE_3348   cmr FALSE 0.016 710.000 0.000 NA   NA
 4589713 4589714 YPE_3348 YPE_3349 cmr   FALSE 0.009 473.000 0.000 1.000 N NA
 4589714 4589715 YPE_3349 YPE_3350     TRUE 0.939 54.000 0.167 1.000 Y NA
 4589716 4589717 YPE_3351 YPE_3352     FALSE 0.015 882.000 0.000 1.000   NA
 4589717 4589718 YPE_3352 YPE_3354     FALSE 0.330 76.000 0.000 NA   NA
 4589718 4589720 YPE_3354 YPE_3355     FALSE 0.294 93.000 0.000 NA   NA
 4589720 4589721 YPE_3355 YPE_3356     TRUE 0.957 39.000 0.500 1.000   NA
 4589722 4589723 YPE_3357 YPE_3358 xylB xylA TRUE 0.687 124.000 0.020 1.000 Y NA
 4589724 4589725 YPE_3359 YPE_3360     TRUE 0.940 208.000 0.518 0.012 Y NA
 4589725 4589726 YPE_3360 YPE_3361     TRUE 0.999 -13.000 0.469 0.012 Y NA
 4589726 4589727 YPE_3361 YPE_3362   xlyR TRUE 0.499 90.000 0.146 1.000 N NA
 4589727 4589728 YPE_3362 YPE_3363 xlyR   FALSE 0.244 130.000 0.000 NA   NA
 4589728 4589729 YPE_3363 YPE_3364     FALSE 0.213 162.000 0.000 NA   NA
 4589729 4589730 YPE_3364 YPE_3365     TRUE 0.823 59.000 0.222 NA   NA
 4589731 4589732 YPE_3366 YPE_3367     FALSE 0.195 174.000 0.000 NA   NA
 4589732 4589734 YPE_3367 YPE_3368     TRUE 0.560 39.000 0.000 NA   NA
 4589734 4589735 YPE_3368 YPE_3369     FALSE 0.014 1898.000 0.000 1.000   NA
 4589735 4589736 YPE_3369 YPE_3370     TRUE 1.000 -3.000 0.870 1.000 Y NA
 4589736 4589737 YPE_3370 YPE_3371     TRUE 1.000 -10.000 0.870 0.053 Y NA
 4589737 4589738 YPE_3371 YPE_3372     TRUE 0.995 10.000 0.356 1.000 Y NA
 4589738 4589739 YPE_3372 YPE_3373     FALSE 0.008 523.000 0.000 1.000 N NA
 4589739 4589740 YPE_3373 YPE_3374     TRUE 0.973 2.000 0.138 1.000   NA
 4589740 4589741 YPE_3374 YPE_3375     TRUE 0.763 83.000 0.250 1.000   NA
 4589741 4589742 YPE_3375 YPE_3376     TRUE 0.997 -3.000 0.800 1.000 N NA
 4589743 4589744 YPE_3377 YPE_3378 hutU hutH TRUE 0.999 -3.000 0.315 0.000 Y NA
 4589744 4589745 YPE_3378 YPE_3379 hutH   FALSE 0.150 418.000 0.006 1.000 Y NA
 4589745 4589746 YPE_3379 YPE_3380     FALSE 0.008 468.000 0.000 NA N NA
 4589746 4589747 YPE_3380 YPE_3381     FALSE 0.020 529.000 0.000 NA   NA
 4589747 4589748 YPE_3381 YPE_3382   uhpA TRUE 0.466 116.000 0.103 1.000   NA
 4589748 4589749 YPE_3382 YPE_3384 uhpA uhpB TRUE 0.934 -3.000 0.000 NA   NA
 4589749 4589751 YPE_3384 YPE_3385 uhpB   FALSE 0.304 87.000 0.000 NA   NA
 4589751 4589752 YPE_3385 YPE_3386     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4589752 4589753 YPE_3386 YPE_3387   uhpC FALSE 0.006 900.000 0.000 1.000 N NA
 4589753 4589754 YPE_3387 YPE_3388 uhpC   FALSE 0.257 117.000 0.000 NA   NA
 4589754 4589755 YPE_3388 YPE_3389     FALSE 0.048 313.000 0.000 NA   NA
 4589755 4589756 YPE_3389 YPE_3390     TRUE 0.741 109.000 0.286 NA   NA
 4589756 4589757 YPE_3390 YPE_3391     TRUE 0.734 18.000 0.000 NA   NA
 4589757 4589758 YPE_3391 YPE_3392   dppA FALSE 0.030 403.000 0.000 NA   NA
 4589758 4589759 YPE_3392 YPE_3393 dppA dppB TRUE 0.520 283.000 0.087 0.053 Y NA
 4589759 4589760 YPE_3393 YPE_3394 dppB dppC TRUE 0.988 82.000 0.779 0.053 Y NA
 4589760 4589761 YPE_3394 YPE_3395 dppC dppD TRUE 0.996 14.000 0.560 1.000 Y NA
 4589761 4589762 YPE_3395 YPE_3396 dppD dppF TRUE 0.986 66.000 0.500 0.001 Y NA
 4589762 4589763 YPE_3396 YPE_3398 dppF bcsZ FALSE 0.270 104.000 0.000 NA   NA
 4589763 4589765 YPE_3398 YPE_3399 bcsZ hmsP FALSE 0.048 314.000 0.000 NA   NA
 4589765 4589766 YPE_3399 YPE_3400 hmsP   FALSE 0.036 640.000 0.000 0.084   NA
 4589766 4589767 YPE_3400 YPE_3401   pelY FALSE 0.403 246.000 0.250 1.000   NA
 4589767 4589768 YPE_3401 YPE_3402 pelY   TRUE 0.703 125.000 0.250 1.000   NA
 4589768 4589769 YPE_3402 YPE_3403   dctA FALSE 0.027 455.000 0.000 1.000   NA
 4589769 4589770 YPE_3403 YPE_3404 dctA   FALSE 0.075 365.000 0.088 1.000   NA
 4589771 4589772 YPE_3405 YPE_3406 kdgK   FALSE 0.068 279.000 0.034 1.000   NA
 4589773 4589774 YPE_3407 YPE_3408     FALSE 0.018 305.000 0.000 NA N NA
 4589775 4589776 YPE_3409 YPE_3410 cdh   TRUE 0.686 25.000 0.033 1.000   NA
 4589777 4589778 YPE_3411 YPE_3412 yapE   FALSE 0.301 88.000 0.000 NA   NA
 4589778 4589779 YPE_3412 YPE_3413     TRUE 0.912 2.000 0.000 NA   NA
 4589779 4589780 YPE_3413 YPE_3414     FALSE 0.369 68.000 0.000 NA   NA
 4589781 4589782 YPE_3415 YPE_3416 glxK   TRUE 0.993 11.000 0.295 1.000 Y NA
 4589782 4589783 YPE_3416 YPE_3417     TRUE 0.579 178.000 0.290 1.000 N NA
 4589783 4589784 YPE_3417 YPE_3418   gor FALSE 0.072 192.000 0.000 1.000 N NA
 4589784 4589785 YPE_3418 YPE_3419 gor   FALSE 0.341 186.000 0.100 1.000   NA
 4589786 4589787 YPE_3420 YPE_3421 prlC   TRUE 0.945 4.000 0.098 NA   NA
 4589788 4589789 YPE_3422 YPE_3423   gdhA FALSE 0.037 245.000 0.000 1.000 N NA
 4589789 4589790 YPE_3423 YPE_3424 gdhA uspA FALSE 0.035 247.000 0.000 1.000 N NA
 4589792 4589793 YPE_3426 YPE_3427 tnp   FALSE 0.028 266.000 0.000 1.000 N NA
 4589796 4589797 YPE_3430 YPE_3431     TRUE 0.968 -7.000 0.000 0.012   NA
 4589797 4589798 YPE_3431 YPE_3432     TRUE 0.951 31.000 0.238 0.012   NA
 4589798 4589799 YPE_3432 YPE_3433     TRUE 0.523 75.000 0.095 NA   NA
 4589799 4589800 YPE_3433 YPE_3434     TRUE 0.876 26.000 0.149 NA   NA
 4589800 4589801 YPE_3434 YPE_3435     TRUE 0.988 10.000 0.180 NA Y NA
 4589802 4589803 YPE_3436 YPE_3437     TRUE 0.924 0.000 0.000 NA   NA
 4589804 4589805 YPE_3438 YPE_3439 ryhB   FALSE 0.117 221.000 0.000 NA   NA
 4589805 4589806 YPE_3439 YPE_3440   gntR TRUE 0.407 129.000 0.091 NA   NA
 4589808 4589809 YPE_3442 YPE_3443 gntK   FALSE 0.183 182.000 0.000 NA   NA
 4589809 4589810 YPE_3443 YPE_3444     FALSE 0.035 371.000 0.000 NA   NA
 4589812 4589813 YPE_3446 YPE_3447 asd   FALSE 0.205 169.000 0.000 NA   NA
 4589813 4589814 YPE_3447 YPE_3448     FALSE 0.094 241.000 0.000 NA   NA
 4589814 4589815 YPE_3448 YPE_3449     TRUE 0.844 7.000 0.000 NA   NA
 4589819 4589820 YPE_3453 YPE_3454 glgB glgX TRUE 0.995 2.000 0.069 0.001 Y NA
 4589820 4589821 YPE_3454 YPE_3455 glgX glgC TRUE 0.991 10.000 0.228 1.000 Y NA
 4589821 4589822 YPE_3455 YPE_3456 glgC glgA TRUE 0.950 68.000 0.307 1.000 Y NA
 4589822 4589823 YPE_3456 YPE_3457 glgA glgP TRUE 0.839 185.000 0.228 1.000 Y NA
 4589826 4589827 YPE_3460 YPE_3461     FALSE 0.050 309.000 0.000 NA   NA
 4589827 4589828 YPE_3461 YPE_3462     TRUE 0.900 3.000 0.000 NA   NA
 4589829 4589830 YPE_3463 YPE_3464   ppc FALSE 0.005 3270.000 0.000 1.000 N NA
 4589830 4589831 YPE_3464 YPE_3465 ppc argE FALSE 0.023 374.000 0.053 1.000 N NA
 4589832 4589833 YPE_3466 YPE_3467 argC argB TRUE 0.850 169.000 0.097 0.002 Y NA
 4589833 4589834 YPE_3467 YPE_3468 argB argH TRUE 0.626 167.000 0.017 1.000 Y NA
 4589834 4589835 YPE_3468 YPE_3469 argH   FALSE 0.007 599.000 0.000 1.000 N NA
 4589835 4589836 YPE_3469 YPE_3470     FALSE 0.115 222.000 0.000 NA   NA
 4589836 4589837 YPE_3470 YPE_3471     FALSE 0.208 166.000 0.000 NA   NA
 4589837 4589838 YPE_3471 YPE_3472     TRUE 0.978 76.000 1.000 0.008   NA
 4589838 4589839 YPE_3472 YPE_3473     TRUE 0.957 65.000 0.667 0.008 N NA
 4589840 4589841 YPE_3474 YPE_3475     TRUE 0.751 95.000 0.204 0.004 N NA
 4589844 4589845 YPE_3478 YPE_3479     TRUE 0.985 13.000 0.508 NA   NA
 4589847 4589848 YPE_3481 YPE_3482   murI TRUE 0.704 -55.000 0.025 1.000 N NA
 4589849 4589850 YPE_3483 YPE_3484     FALSE 0.235 137.000 0.000 NA   NA
 4589850 4589851 YPE_3484 YPE_3485     FALSE 0.079 253.000 0.000 NA   NA
 4589851 4589852 YPE_3485 YPE_3486     FALSE 0.265 108.000 0.000 NA   NA
 4589852 4589853 YPE_3486 YPE_3487     FALSE 0.251 124.000 0.000 NA   NA
 4589853 4589854 YPE_3487 YPE_3488     TRUE 0.831 9.000 0.000 NA   NA
 4589854 4589855 YPE_3488 YPE_3489     FALSE 0.014 978.000 0.000 NA   NA
 4589855 4589856 YPE_3489 YPE_3490     TRUE 0.989 86.000 0.804 0.011 Y NA
 4589856 4589857 YPE_3490 YPE_3491     TRUE 0.998 12.000 0.506 0.011 Y NA
 4589857 4589858 YPE_3491 YPE_3492     TRUE 1.000 0.000 0.865 0.011 Y NA
 4589862 4589863 YPE_3496 YPE_3497 ilvG ilvM TRUE 0.999 -3.000 0.943 0.002   NA
 4589863 4589864 YPE_3497 YPE_3498 ilvM ilvE TRUE 0.925 23.000 0.205 1.000   NA
 4589864 4589865 YPE_3498 YPE_3499 ilvE ilvD FALSE 0.339 311.000 0.075 1.000 Y NA
 4589865 4589866 YPE_3499 YPE_3500 ilvD ilvA TRUE 0.986 6.000 0.106 1.000 Y NA
 4589867 4589868 YPE_3501 YPE_3502     TRUE 0.439 59.000 0.000 NA   NA
 4589868 4589869 YPE_3502 YPE_3503     TRUE 0.439 59.000 0.000 NA   NA
 4589869 4589870 YPE_3503 YPE_3504     TRUE 0.996 -16.000 0.667 NA   NA
 4589870 4589871 YPE_3504 YPE_3505     TRUE 0.933 72.000 0.667 NA   NA
 4589874 4589875 YPE_3508 YPE_3510 ilvC   FALSE 0.013 2019.000 0.000 NA   NA
 4589875 4589876 YPE_3510 YPE_3512   imm FALSE 0.021 506.000 0.000 NA   NA
 4589877 4589878 YPE_3513 YPE_3514     TRUE 0.688 24.000 0.000 NA   NA
 4589878 4589879 YPE_3514 YPE_3515     TRUE 0.986 38.000 1.000 1.000   NA
 4589879 4589880 YPE_3515 YPE_3516     TRUE 0.980 17.000 0.500 1.000   NA
 4589880 4589881 YPE_3516 YPE_3517     TRUE 0.991 28.000 0.500 1.000 Y NA
 4589881 4589882 YPE_3517 YPE_3518     TRUE 0.992 64.000 1.000 1.000 Y NA
 4589884 4589885 YPE_3520 YPE_3521     FALSE 0.135 97.000 0.000 1.000 N NA
 4589885 4589886 YPE_3521 YPE_3522   ppiC FALSE 0.103 239.000 0.000 1.000   NA
 4589889 4589890 YPE_3525 YPE_3526 trxA rho FALSE 0.026 480.000 0.087 1.000 N NA
 4589890 4589891 YPE_3526 YPE_3527 rho rfe FALSE 0.008 535.000 0.000 1.000 N NA
 4589891 4589892 YPE_3527 YPE_3528 rfe wzzE TRUE 0.998 21.000 0.735 0.003 Y NA
 4589892 4589893 YPE_3528 YPE_3529 wzzE rffE TRUE 0.917 281.000 0.677 0.003 Y NA
 4589893 4589894 YPE_3529 YPE_3530 rffE rffD TRUE 0.998 -3.000 0.348 1.000 Y NA
 4589894 4589895 YPE_3530 YPE_3531 rffD rffG TRUE 0.998 -3.000 0.273 1.000 Y NA
 4589895 4589896 YPE_3531 YPE_3532 rffG rffH TRUE 0.908 312.000 0.739 0.003 Y NA
 4589896 4589897 YPE_3532 YPE_3533 rffH rffC TRUE 0.969 -22.000 0.145 1.000   NA
 4589897 4589898 YPE_3533 YPE_3534 rffC rffA TRUE 0.986 2.000 0.248 1.000   NA
 4589898 4589899 YPE_3534 YPE_3535 rffA wzxE TRUE 0.984 2.000 0.218 1.000   NA
 4589899 4589900 YPE_3535 YPE_3536 wzxE rffT TRUE 0.981 23.000 0.605 1.000   NA
 4589900 4589901 YPE_3536 YPE_3537 rffT wzyE TRUE 0.998 -3.000 0.684 1.000   NA
 4589901 4589902 YPE_3537 YPE_3538 wzyE rffM TRUE 0.940 9.000 0.126 1.000   NA
 4589902 4589903 YPE_3538 YPE_3539 rffM   FALSE 0.008 524.000 0.000 1.000 N NA
 4589903 4589904 YPE_3539 YPE_3540     FALSE 0.225 149.000 0.000 NA   NA
 4589904 4589905 YPE_3540 YPE_3541     FALSE 0.312 83.000 0.000 NA   NA
 4589905 4589906 YPE_3541 YPE_3542     TRUE 0.742 17.000 0.000 NA   NA
 4589906 4589907 YPE_3542 YPE_3543     FALSE 0.330 76.000 0.000 NA   NA
 4589907 4589908 YPE_3543 YPE_3544   tnp FALSE 0.014 867.000 0.000 NA   NA
 4589909 4589910 YPE_3545 YPE_3546 hemY hemX TRUE 0.993 3.000 0.144 1.000 Y NA
 4589910 4589911 YPE_3546 YPE_3547 hemX hemD TRUE 0.992 31.000 0.600 1.000 Y NA
 4589911 4589912 YPE_3547 YPE_3548 hemD hemC TRUE 0.998 -3.000 0.205 0.001 Y NA
 4589915 4589916 YPE_3551 YPE_3552   dapF FALSE 0.040 184.000 0.021 NA N NA
 4589916 4589917 YPE_3552 YPE_3553 dapF   TRUE 0.739 65.000 0.175 NA   NA
 4589917 4589918 YPE_3553 YPE_3554   xerC TRUE 0.998 -3.000 0.714 NA   NA
 4589918 4589919 YPE_3554 YPE_3555 xerC   TRUE 0.993 0.000 0.367 1.000   NA
 4589919 4589920 YPE_3555 YPE_3556   uvrD TRUE 0.549 102.000 0.128 1.000   NA
 4589922 4589923 YPE_3558 YPE_3559     TRUE 0.796 14.000 0.042 NA   NA
 4589923 4589924 YPE_3559 YPE_3560   corA FALSE 0.018 649.000 0.000 1.000   NA
 4589925 4589926 YPE_3561 YPE_3562     TRUE 0.501 87.000 0.099 NA   NA
 4589927 4589928 YPE_3563 YPE_3564 pldA recQ FALSE 0.256 78.000 0.057 1.000 N NA
 4589928 4589929 YPE_3564 YPE_3565 recQ rhtC FALSE 0.155 107.000 0.043 1.000 N NA
 4589931 4589932 YPE_3567 YPE_3568 pldB   TRUE 0.965 35.000 0.524 1.000   NA
 4589932 4589933 YPE_3568 YPE_3569   glpA FALSE 0.013 5250.000 0.000 1.000   NA
 4589933 4589934 YPE_3569 YPE_3570 glpA glpB TRUE 0.997 -10.000 0.650 0.001 N NA
 4589934 4589935 YPE_3570 YPE_3571 glpB glpC TRUE 0.969 45.000 0.547 0.001 N NA
 4589936 4589937 YPE_3572 YPE_3573     FALSE 0.340 130.000 0.066 NA   NA
 4589939 4589940 YPE_3575 YPE_3576 zntA   FALSE 0.307 414.000 0.325 0.063   NA
 4589941 4589942 YPE_3577 YPE_3578     FALSE 0.175 212.000 0.058 NA   NA
 4589943 4589944 YPE_3579 YPE_3580     TRUE 0.938 -10.000 0.063 NA   NA
 4589944 4589945 YPE_3580 YPE_3581     FALSE 0.262 110.000 0.000 NA   NA
 4589946 4589947 YPE_3582 YPE_3583 ftsY ftsE TRUE 0.947 6.000 0.117 0.088 N NA
 4589947 4589948 YPE_3583 YPE_3584 ftsE ftsX TRUE 0.992 -10.000 0.121 1.000 Y NA
 4589948 4589949 YPE_3584 YPE_3585 ftsX rpoH FALSE 0.031 311.000 0.051 1.000 N NA
 4589949 4589950 YPE_3585 YPE_3586 rpoH tnp FALSE 0.053 214.000 0.000 1.000 N NA
 4589952 4589953 YPE_3588 YPE_3589 livK livH TRUE 0.835 181.000 0.217 1.000 Y NA
 4589953 4589954 YPE_3589 YPE_3590 livH livM TRUE 0.999 -3.000 0.574 0.052 Y NA
 4589954 4589955 YPE_3590 YPE_3591 livM livG TRUE 0.999 -3.000 0.574 1.000 Y NA
 4589955 4589956 YPE_3591 YPE_3592 livG livF TRUE 0.996 45.000 0.967 0.017 Y NA
 4589956 4589957 YPE_3592 YPE_3593 livF   FALSE 0.107 228.000 0.000 NA   NA
 4589958 4589959 YPE_3594 YPE_3595     TRUE 0.920 183.000 1.000 NA   NA
 4589959 4589960 YPE_3595 YPE_3596     TRUE 0.940 62.000 0.600 NA   NA
 4589960 4589961 YPE_3596 YPE_3597     TRUE 0.995 -28.000 0.600 NA   NA
 4589961 4589962 YPE_3597 YPE_3598     TRUE 0.957 18.000 0.286 NA   NA
 4589962 4589963 YPE_3598 YPE_3599     FALSE 0.068 267.000 0.000 NA   NA
 4589964 4589965 YPE_3600 YPE_3601 ugpB ugpA TRUE 0.912 298.000 0.793 0.052 Y NA
 4589965 4589966 YPE_3601 YPE_3602 ugpA ugpE TRUE 0.999 -3.000 0.306 0.052 Y NA
 4589966 4589967 YPE_3602 YPE_3603 ugpE ugpC TRUE 0.996 7.000 0.272 0.052 Y NA
 4589967 4589968 YPE_3603 YPE_3604 ugpC ugpQ TRUE 0.798 -3.000 0.024 1.000 N NA
 4589968 4589969 YPE_3604 YPE_3605 ugpQ   FALSE 0.259 101.000 0.023 1.000   NA
 4589969 4589970 YPE_3605 YPE_3606     FALSE 0.073 382.000 0.000 0.063   NA
 4589974 4589975 YPE_3610 YPE_3611 udp   FALSE 0.104 121.000 0.030 1.000 N NA
 4589975 4589976 YPE_3611 YPE_3612     FALSE 0.217 358.000 0.000 1.000 Y NA
 4589976 4589977 YPE_3612 YPE_3613     FALSE 0.072 272.000 0.041 NA   NA
 4589977 4589978 YPE_3613 YPE_3614   rmuC FALSE 0.310 208.000 0.125 NA   NA
 4589978 4589979 YPE_3614 YPE_3615 rmuC ubiE FALSE 0.338 92.000 0.047 NA   NA
 4589979 4589980 YPE_3615 YPE_3616 ubiE   TRUE 0.853 32.000 0.145 1.000   NA
 4589980 4589981 YPE_3616 YPE_3617   aarF TRUE 0.994 0.000 0.432 1.000   NA
 4589981 4589982 YPE_3617 YPE_3618 aarF tatA FALSE 0.177 180.000 0.025 1.000   NA
 4589982 4589983 YPE_3618 YPE_3619 tatA tatB TRUE 0.991 4.000 0.130 1.000 Y NA
 4589983 4589984 YPE_3619 YPE_3620 tatB tatC TRUE 0.997 3.000 0.333 NA Y NA
 4589984 4589985 YPE_3620 YPE_3622 tatC tatD TRUE 0.457 56.000 0.000 NA   NA
 4589985 4589987 YPE_3622 YPE_3623 tatD   FALSE 0.304 87.000 0.000 NA   NA
 4589987 4589988 YPE_3623 YPE_3624     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4589988 4589989 YPE_3624 YPE_3625   hemB FALSE 0.012 389.000 0.000 1.000 N NA
 4589991 4589992 YPE_3627 YPE_3628   fre TRUE 0.904 55.000 0.090 1.000 Y NA
 4589993 4589994 YPE_3629 YPE_3630 fadA fadB TRUE 0.997 12.000 0.607 1.000 Y NA
 4589995 4589996 YPE_3631 YPE_3633 pepQ yigZ TRUE 0.924 0.000 0.000 NA   NA
 4589996 4589998 YPE_3633 YPE_3634 yigZ tnp FALSE 0.229 143.000 0.000 NA   NA
 4589998 4589999 YPE_3634 YPE_3635 tnp trkH FALSE 0.007 589.000 0.000 1.000 N NA
 4589999 4590000 YPE_3635 YPE_3636 trkH hemG TRUE 0.963 22.000 0.455 1.000 N NA
 4590000 4590001 YPE_3636 YPE_3637 hemG   FALSE 0.023 475.000 0.000 NA   NA
 4590002 4590003 YPE_3638 YPE_3639     FALSE 0.265 108.000 0.000 NA   NA
 4590003 4590004 YPE_3639 YPE_3640   murB FALSE 0.024 462.000 0.000 NA   NA
 4590004 4590005 YPE_3640 YPE_3641 murB birA TRUE 0.982 -3.000 0.211 1.000 N NA
 4590006 4590007 YPE_3642 YPE_3643 coaA   FALSE 0.139 211.000 0.000 1.000   NA
 4590008 4590009 YPE_3644 YPE_3645     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4590009 4590010 YPE_3645 YPE_3646     FALSE 0.024 464.000 0.000 NA   NA
 4590010 4590011 YPE_3646 YPE_3647     TRUE 0.727 19.000 0.000 NA   NA
 4590011 4590012 YPE_3647 YPE_3648     FALSE 0.224 150.000 0.000 NA   NA
 4590012 4590013 YPE_3648 YPE_3649     TRUE 0.844 7.000 0.000 NA   NA
 4590013 4590014 YPE_3649 YPE_3650   tufA FALSE 0.264 109.000 0.000 NA   NA
 4590014 4590015 YPE_3650 YPE_3651 tufA secE FALSE 0.015 251.000 0.009 1.000 N NA
 4590015 4590016 YPE_3651 YPE_3652 secE nusG TRUE 0.997 2.000 0.843 1.000 N NA
 4590016 4590017 YPE_3652 YPE_3653 nusG rplK TRUE 0.808 191.000 0.681 1.000 N NA
 4590017 4590018 YPE_3653 YPE_3654 rplK rplA TRUE 0.999 4.000 0.838 0.014 Y NA
 4590018 4590019 YPE_3654 YPE_3655 rplA rplJ TRUE 0.659 365.000 0.302 0.014 Y NA
 4590019 4590020 YPE_3655 YPE_3656 rplJ rplL TRUE 0.993 67.000 0.884 0.011 Y NA
 4590020 4590021 YPE_3656 YPE_3657 rplL rpoB FALSE 0.210 343.000 0.223 1.000   NA
 4590021 4590022 YPE_3657 YPE_3658 rpoB rpoC TRUE 0.964 129.000 0.851 0.001   NA
 4590025 4590026 YPE_3661 YPE_3662 thiH thiG TRUE 0.998 -7.000 0.277 0.002 Y NA
 4590026 4590027 YPE_3662 YPE_3663 thiG thiF TRUE 0.951 28.000 0.005 0.014 Y NA
 4590027 4590028 YPE_3663 YPE_3664 thiF thiE TRUE 0.996 -10.000 0.242 1.000 Y NA
 4590028 4590029 YPE_3664 YPE_3665 thiE thiC TRUE 0.984 14.000 0.063 0.002 Y NA
 4590029 4590030 YPE_3665 YPE_3666 thiC   TRUE 0.918 -7.000 0.000 NA   NA
 4590030 4590031 YPE_3666 YPE_3667   rsd FALSE 0.252 123.000 0.000 NA   NA
 4590032 4590033 YPE_3668 YPE_3669 nudC   FALSE 0.294 93.000 0.000 NA   NA
 4590033 4590034 YPE_3669 YPE_3670   hemE FALSE 0.256 119.000 0.000 NA   NA
 4590034 4590035 YPE_3670 YPE_3671 hemE nfi FALSE 0.166 66.000 0.028 1.000 N NA
 4590035 4590036 YPE_3671 YPE_3672 nfi   TRUE 0.692 46.000 0.086 1.000   NA
 4590036 4590037 YPE_3672 YPE_3673   hupA TRUE 0.694 189.000 0.355 1.000   NA
 4590037 4590038 YPE_3673 YPE_3674 hupA   TRUE 0.992 2.000 0.375 NA   NA
 4590039 4590040 YPE_3675 YPE_3676 purD purH TRUE 0.951 60.000 0.238 1.000 Y NA
 4590041 4590042 YPE_3677 YPE_3678     FALSE 0.271 103.000 0.000 NA   NA
 4590042 4590043 YPE_3678 YPE_3679     TRUE 0.481 52.000 0.000 NA   NA
 4590043 4590044 YPE_3679 YPE_3680     FALSE 0.120 219.000 0.000 NA   NA
 4590045 4590046 YPE_3681 YPE_3682     FALSE 0.265 108.000 0.000 NA   NA
 4590046 4590047 YPE_3682 YPE_3683     TRUE 0.776 14.000 0.000 NA   NA
 4590047 4590048 YPE_3683 YPE_3684     TRUE 0.544 41.000 0.000 NA   NA
 4590048 4590049 YPE_3684 YPE_3685   metA FALSE 0.015 741.000 0.000 NA   NA
 4590049 4590050 YPE_3685 YPE_3686 metA aceB FALSE 0.011 421.000 0.000 1.000 N NA
 4590050 4590051 YPE_3686 YPE_3687 aceB aceA TRUE 0.931 47.000 0.118 1.000 Y NA
 4590051 4590052 YPE_3687 YPE_3688 aceA aceK FALSE 0.309 256.000 0.273 1.000 N NA
 4590052 4590053 YPE_3688 YPE_3690 aceK metH FALSE 0.005 1179.000 0.000 1.000 N NA
 4590054 4590055 YPE_3691 YPE_3692   shlB TRUE 0.924 70.000 0.600 NA   NA
 4590055 4590056 YPE_3692 YPE_3693 shlB lysC FALSE 0.006 568.000 0.000 NA N NA
 4590057 4590058 YPE_3694 YPE_3695 pgi   FALSE 0.206 135.000 0.015 1.000   NA
 4590059 4590060 YPE_3696 YPE_3697 malG malF TRUE 0.998 14.000 0.814 0.052 Y NA
 4590060 4590061 YPE_3697 YPE_3698 malF malE TRUE 0.647 187.000 0.060 1.000 Y NA
 4590062 4590063 YPE_3699 YPE_3700   malK TRUE 0.882 4.000 0.000 NA   NA
 4590063 4590064 YPE_3700 YPE_3701 malK lamB TRUE 0.859 71.000 0.000 0.065 Y NA
 4590064 4590065 YPE_3701 YPE_3702 lamB malM FALSE 0.122 223.000 0.000 1.000   NA
 4590065 4590066 YPE_3702 YPE_3703 malM   FALSE 0.029 411.000 0.000 NA   NA
 4590068 4590069 YPE_3705 YPE_3706     TRUE 0.957 68.000 0.821 NA   NA
 4590069 4590070 YPE_3706 YPE_3707     TRUE 0.992 7.000 0.627 NA   NA
 4590070 4590071 YPE_3707 YPE_3709N     TRUE 0.924 0.000 0.000 NA   NA
 4590073 4590074 YPE_3710 YPE_3711     TRUE 0.939 54.000 0.167 1.000 Y NA
 4590074 4590075 YPE_3711 YPE_3712   rpsO FALSE 0.146 87.000 0.000 1.000 N NA
 4590075 4590076 YPE_3712 YPE_3713 rpsO truB TRUE 0.881 122.000 0.211 1.000 Y NA
 4590076 4590077 YPE_3713 YPE_3714 truB rbfA TRUE 0.998 0.000 0.318 1.000 Y NA
 4590077 4590078 YPE_3714 YPE_3715 rbfA infB TRUE 0.976 66.000 0.530 1.000 Y NA
 4590078 4590079 YPE_3715 YPE_3716 infB nusA TRUE 0.940 25.000 0.342 1.000 N NA
 4590079 4590080 YPE_3716 YPE_3717 nusA   TRUE 0.987 22.000 0.759 NA   NA
 4590080 4590081 YPE_3717 YPE_3718     FALSE 0.130 210.000 0.000 NA   NA
 4590081 4590082 YPE_3718 YPE_3719     TRUE 0.424 61.000 0.000 NA   NA
 4590082 4590083 YPE_3719 YPE_3720   secG FALSE 0.294 93.000 0.000 NA   NA
 4590083 4590084 YPE_3720 YPE_3721 secG mrsA FALSE 0.026 223.000 0.016 1.000 N NA
 4590084 4590085 YPE_3721 YPE_3722 mrsA folP TRUE 0.960 10.000 0.260 1.000 N NA
 4590085 4590086 YPE_3722 YPE_3723 folP ftsH TRUE 0.704 120.000 0.325 1.000 N NA
 4590086 4590087 YPE_3723 YPE_3724 ftsH ftsJ TRUE 0.670 57.000 0.152 1.000 N NA
 4590090 4590091 YPE_3727 YPE_3728 dacB basR TRUE 0.894 6.000 0.101 1.000 N NA
 4590091 4590092 YPE_3728 YPE_3729 basR basS TRUE 0.998 -3.000 0.381 1.000 Y NA
 4590093 4590094 YPE_3730 YPE_3731     TRUE 0.900 1.000 0.015 1.000   NA
 4590094 4590095 YPE_3731 YPE_3732   rpmA FALSE 0.273 88.000 0.019 1.000   NA
 4590095 4590096 YPE_3732 YPE_3733 rpmA rplU TRUE 0.997 20.000 0.667 0.011 Y NA
 4590098 4590099 YPE_3735 YPE_3736     FALSE 0.099 236.000 0.000 NA   NA
 4590099 4590100 YPE_3736 YPE_3737   mdh FALSE 0.029 409.000 0.000 NA   NA
 4590101 4590102 YPE_3738 YPE_3739 argR   FALSE 0.031 389.000 0.000 NA   NA
 4590104 4590105 YPE_3741 YPE_3742 fbp ppa FALSE 0.082 200.000 0.043 1.000 N NA
 4590106 4590107 YPE_3743 YPE_3744     TRUE 0.973 3.000 0.167 NA   NA
 4590107 4590108 YPE_3744 YPE_3745     TRUE 0.997 -3.000 0.575 NA   NA
 4590109 4590110 YPE_3746 YPE_3747 msrA   FALSE 0.071 278.000 0.042 NA   NA
 4590114 4590115 YPE_3751 YPE_3752 cpdB   FALSE 0.072 155.000 0.030 NA N NA
 4590117 4590118 YPE_3754 YPE_3755     FALSE 0.267 140.000 0.047 NA   NA
 4590119 4590120 YPE_3756 YPE_3757 tnp rplI FALSE 0.068 196.000 0.000 1.000 N NA
 4590120 4590121 YPE_3757 YPE_3758 rplI rpsR TRUE 0.992 40.000 0.499 0.011 Y NA
 4590121 4590122 YPE_3758 YPE_3759 rpsR priB TRUE 0.928 5.000 0.128 1.000 N NA
 4590122 4590123 YPE_3759 YPE_3760 priB rpsF TRUE 0.914 6.000 0.122 1.000 N NA
 4590123 4590124 YPE_3760 YPE_3761 rpsF   TRUE 0.776 14.000 0.000 NA   NA
 4590125 4590126 YPE_3762 YPE_3763     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4590126 4590127 YPE_3763 YPE_2700C   yqjG FALSE 0.335 74.000 0.000 NA   NA
 4590131 4590132 YPE_3767 YPE_3768 rnpB   TRUE 0.719 20.000 0.000 NA   NA
 4590133 4590134 YPE_3769 YPE_3770     TRUE 0.657 84.000 0.172 NA   NA
 4590134 4590135 YPE_3770 YPE_3771   diaA FALSE 0.189 271.000 0.187 1.000 N NA
 4590135 4590136 YPE_3771 YPE_3772 diaA   TRUE 0.990 11.000 0.613 NA   NA
 4590137 4590138 YPE_3773 YPE_3774 mtgA elbB TRUE 0.957 -3.000 0.066 NA   NA
 4590138 4590139 YPE_3774 YPE_3775 elbB   TRUE 0.633 30.000 0.000 NA   NA
 4590141 4590142 YPE_3777 YPE_3778 arcB   FALSE 0.172 264.000 0.113 1.000   NA
 4590143 4590144 YPE_3779 YPE_3780 gltB gltD TRUE 0.991 10.000 0.096 0.000 Y NA
 4590144 4590145 YPE_3780 YPE_3781 gltD   FALSE 0.026 441.000 0.000 NA   NA
 4590146 4590147 YPE_3782 YPE_3783 sspB sspA TRUE 0.996 6.000 0.831 NA   NA
 4590147 4590148 YPE_3783 YPE_3784 sspA rpsI FALSE 0.007 374.000 0.014 1.000 N NA
 4590148 4590149 YPE_3784 YPE_3785 rpsI rplM TRUE 0.998 15.000 0.601 0.011 Y NA
 4590149 4590150 YPE_3785 YPE_3786 rplM   FALSE 0.032 314.000 0.003 NA   NA
 4590151 4590152 YPE_3787 YPE_3788   degQ FALSE 0.210 271.000 0.154 NA   NA
 4590155 4590156 YPE_3791 YPE_3792 murA   TRUE 0.589 154.000 0.258 1.000 N NA
 4590156 4590157 YPE_3792 YPE_3793     TRUE 0.817 138.000 0.453 NA   NA
 4590157 4590158 YPE_3793 YPE_3794     TRUE 0.925 36.000 0.308 NA   NA
 4590158 4590159 YPE_3794 YPE_3795     TRUE 0.947 13.000 0.188 NA   NA
 4590159 4590160 YPE_3795 YPE_3796     TRUE 0.992 5.000 0.562 NA   NA
 4590160 4590161 YPE_3796 YPE_3797     TRUE 0.897 218.000 0.530 NA Y NA
 4590162 4590163 YPE_3798 YPE_3799   kdsD TRUE 0.604 111.000 0.226 1.000 N NA
 4590163 4590164 YPE_3799 YPE_3800 kdsD kdsC TRUE 0.670 249.000 0.598 1.000   NA
 4590164 4590165 YPE_3800 YPE_3801 kdsC   TRUE 0.997 -3.000 0.617 NA   NA
 4590165 4590166 YPE_3801 YPE_3802     TRUE 0.993 -16.000 0.459 NA   NA
 4590166 4590167 YPE_3802 YPE_3803     TRUE 0.990 7.000 0.543 NA   NA
 4590167 4590168 YPE_3803 YPE_3804   rpoN TRUE 0.745 62.000 0.163 1.000   NA
 4590168 4590169 YPE_3804 YPE_3806 rpoN hpf TRUE 0.688 24.000 0.000 NA   NA
 4590169 4590171 YPE_3806 YPE_3807 hpf ptsN FALSE 0.256 118.000 0.000 NA   NA
 4590171 4590172 YPE_3807 YPE_3808 ptsN   FALSE 0.203 306.000 0.186 NA   NA
 4590172 4590173 YPE_3808 YPE_3809   ptsO TRUE 0.985 -3.000 0.182 NA   NA
 4590173 4590174 YPE_3809 YPE_3810 ptsO pyrB FALSE 0.017 338.000 0.000 1.000 N NA
 4590174 4590175 YPE_3810 YPE_3811 pyrB pyrI TRUE 0.994 12.000 0.197 0.000 Y NA
 4590175 4590176 YPE_3811 YPE_3812 pyrI   FALSE 0.244 138.000 0.084 NA N NA
 4590176 4590177 YPE_3812 YPE_3813     FALSE 0.014 341.000 0.000 NA N NA
 4590177 4590178 YPE_3813 YPE_3814     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4590178 4590179 YPE_3814 YPE_3815     FALSE 0.258 116.000 0.000 NA   NA
 4590179 4590180 YPE_3815 YPE_3816   treR FALSE 0.101 234.000 0.000 NA   NA
 4590180 4590181 YPE_3816 YPE_3817 treR treB FALSE 0.014 375.000 0.000 1.000 N NA
 4590181 4590182 YPE_3817 YPE_3818 treB treC TRUE 0.972 95.000 0.650 1.000 Y NA
 4590182 4590183 YPE_3818 YPE_3819 treC rnk FALSE 0.016 353.000 0.000 1.000 N NA
 4590184 4590185 YPE_3820 YPE_3821 cybC   FALSE 0.133 208.000 0.000 NA   NA
 4590185 4590186 YPE_3821 YPE_3822   pmbA FALSE 0.054 255.000 0.005 NA   NA
 4590188 4590189 YPE_3824 YPE_3825     TRUE 0.984 5.000 0.329 NA   NA
 4590189 4590190 YPE_3825 YPE_3826     FALSE 0.130 210.000 0.000 NA   NA
 4590190 4590192 YPE_3826 YPE_3828   aaeB FALSE 0.068 267.000 0.000 NA   NA
 4590192 4590193 YPE_3828 YPE_3829 aaeB aaeA TRUE 0.998 2.000 1.000 NA   NA
 4590193 4590194 YPE_3829 YPE_3830 aaeA aaeX TRUE 0.949 8.000 0.150 NA   NA
 4590195 4590196 YPE_3831 YPE_3832 aaeR   TRUE 0.475 261.000 0.000 0.048 Y NA
 4590196 4590197 YPE_3832 YPE_3833   tcaA FALSE 0.099 236.000 0.000 NA   NA
 4590197 4590198 YPE_3833 YPE_3835 tcaA tcaC FALSE 0.012 3690.000 0.000 NA   NA
 4590198 4590199 YPE_3835 YPE_3836 tcaC   FALSE 0.240 134.000 0.000 NA   NA
 4590199 4590200 YPE_3836 YPE_3837     TRUE 0.789 13.000 0.000 NA   NA
 4590200 4590201 YPE_3837 YPE_3838     TRUE 0.994 -3.000 0.400 NA   NA
 4590201 4590202 YPE_3838 YPE_3839   tccC1 TRUE 0.901 201.000 1.000 NA   NA
 4590202 4590203 YPE_3839 YPE_3840 tccC1 tccC2 TRUE 0.964 25.000 0.000 0.010 Y NA
 4590204 4590205 YPE_3841 YPE_3842 tldD   TRUE 0.966 12.000 0.259 NA   NA
 4590205 4590206 YPE_3842 YPE_3843     TRUE 0.994 -3.000 0.358 NA   NA
 4590206 4590207 YPE_3843 YPE_3844   cafA TRUE 0.776 94.000 0.296 NA   NA
 4590207 4590208 YPE_3844 YPE_3845 cafA   TRUE 0.989 -10.000 0.417 NA N NA
 4590208 4590209 YPE_3845 YPE_3846   mreD TRUE 0.924 14.000 0.206 NA N NA
 4590209 4590210 YPE_3846 YPE_3847 mreD mreC TRUE 0.999 -3.000 0.550 0.002 Y NA
 4590210 4590211 YPE_3847 YPE_3848 mreC mreB TRUE 0.779 204.000 0.689 1.000 N NA
 4590211 4590212 YPE_3848 YPE_3849 mreB yhdA FALSE 0.017 337.000 0.000 1.000 N NA
 4590213 4590214 YPE_3850 YPE_3851     FALSE 0.166 223.000 0.059 1.000   NA
 4590214 4590215 YPE_3851 YPE_3852     TRUE 0.999 0.000 0.790 0.032   NA
 4590215 4590216 YPE_3852 YPE_3853   aroQ FALSE 0.055 263.000 0.006 1.000   NA
 4590216 4590217 YPE_3853 YPE_3854 aroQ accB TRUE 0.582 158.000 0.254 1.000 N NA
 4590217 4590218 YPE_3854 YPE_3855 accB accC TRUE 0.996 12.000 0.275 0.000 Y NA
 4590218 4590219 YPE_3855 YPE_3856 accC   FALSE 0.078 1234.000 0.103 0.001   NA
 4590219 4590220 YPE_3856 YPE_3857   panF TRUE 0.996 -10.000 0.682 1.000   NA
 4590220 4590221 YPE_3857 YPE_3858 panF prmA FALSE 0.192 76.000 0.041 1.000 N NA
 4590221 4590222 YPE_3858 YPE_3859 prmA dusB FALSE 0.120 589.000 0.042 1.000 Y NA
 4590222 4590223 YPE_3859 YPE_3860 dusB fis TRUE 0.846 25.000 0.161 1.000 N NA
 4590224 4590225 YPE_3861 YPE_3862     FALSE 0.103 231.000 0.000 NA   NA
 4590225 4590226 YPE_3862 YPE_3863     FALSE 0.385 66.000 0.000 NA   NA
 4590226 4590227 YPE_3863 YPE_3864     FALSE 0.315 90.000 0.000 1.000   NA
 4590227 4590228 YPE_3864 YPE_3865     TRUE 0.420 154.000 0.105 1.000   NA
 4590228 4590229 YPE_3865 YPE_3866     FALSE 0.374 178.000 0.105 1.000   NA
 4590229 4590230 YPE_3866 YPE_3867     TRUE 0.414 65.000 0.000 1.000   NA
 4590231 4590232 YPE_3868 YPE_3869 pcp   FALSE 0.064 276.000 0.000 NA   NA
 4590232 4590233 YPE_3869 YPE_3870   cspA1 FALSE 0.294 93.000 0.000 NA   NA
 4590233 4590234 YPE_3870 YPE_3871 cspA1 cspA2 TRUE 0.532 260.000 0.000 0.002 Y NA
 4590239 4590240 YPE_3876 YPE_3877     TRUE 0.979 -3.000 0.102 0.014 N NA
 4590240 4590241 YPE_3877 YPE_3878     TRUE 0.895 19.000 0.184 1.000 N NA
 4590241 4590242 YPE_3878 YPE_3879     TRUE 1.000 2.000 0.900 0.011 Y NA
 4590242 4590243 YPE_3879 YPE_3880     TRUE 0.999 -7.000 0.667 0.011 Y NA
 4590243 4590244 YPE_3880 YPE_3881     TRUE 0.942 204.000 0.714 NA Y NA
 4590245 4590246 YPE_3882 YPE_3883 lpxP   FALSE 0.223 152.000 0.000 NA   NA
 4590247 4590248 YPE_3884 YPE_3885     FALSE 0.043 349.000 0.000 1.000   NA
 4590250 4590251 YPE_3887 YPE_3888 ssuB ssuC TRUE 0.999 -3.000 0.472 1.000 Y NA
 4590251 4590252 YPE_3888 YPE_3889 ssuC ssuD TRUE 0.955 9.000 0.226 1.000 N NA
 4590252 4590253 YPE_3889 YPE_3890 ssuD ssuA TRUE 0.952 19.000 0.341 1.000 N NA
 4590253 4590254 YPE_3890 YPE_3891 ssuA ssuE TRUE 0.934 15.000 0.169 1.000   NA
 4590255 4590256 YPE_3892 YPE_3893     FALSE 0.100 154.000 0.000 1.000 N NA
 4590256 4590257 YPE_3893 YPE_3894     TRUE 0.977 6.000 0.000 1.000 Y NA
 4590259 4590260 YPE_3896 YPE_3897     TRUE 0.995 -3.000 0.455 NA   NA
 4590261 4590262 YPE_3898 YPE_3899     TRUE 0.831 9.000 0.000 NA   NA
 4590262 4590263 YPE_3899 YPE_3900     TRUE 0.520 45.000 0.000 NA   NA
 4590263 4590264 YPE_3900 YPE_3901     TRUE 0.900 3.000 0.000 NA   NA
 4590265 4590266 YPE_3902 YPE_3903     FALSE 0.033 382.000 0.000 NA   NA
 4590267 4590268 YPE_3904 YPE_3905     TRUE 0.992 2.000 0.400 NA   NA
 4590268 4590269 YPE_3905 YPE_3906     TRUE 0.649 28.000 0.000 NA   NA
 4590269 4590270 YPE_3906 YPE_3907     TRUE 0.975 -7.000 0.143 NA   NA
 4590270 4590271 YPE_3907 YPE_3908     TRUE 0.854 6.000 0.000 NA   NA
 4590271 4590272 YPE_3908 YPE_3909     TRUE 0.703 22.000 0.000 NA   NA
 4590272 4590273 YPE_3909 YPE_3910     TRUE 0.934 -3.000 0.000 NA   NA
 4590273 4590274 YPE_3910 YPE_3911     TRUE 0.748 125.000 0.312 NA   NA
 4590274 4590275 YPE_3911 YPE_3912     TRUE 0.981 32.000 0.750 NA   NA
 4590275 4590276 YPE_3912 YPE_3913     TRUE 0.998 -3.000 0.711 NA   NA
 4590276 4590277 YPE_3913 YPE_3914     TRUE 0.949 -3.000 0.053 NA   NA
 4590277 4590278 YPE_3914 YPE_3915   clpV TRUE 0.943 -3.000 0.039 1.000   NA
 4590278 4590279 YPE_3915 YPE_3916 clpV   TRUE 0.985 11.000 0.471 NA   NA
 4590279 4590280 YPE_3916 YPE_3917     TRUE 0.997 0.000 0.673 NA   NA
 4590280 4590281 YPE_3917 YPE_3918     TRUE 0.997 3.000 0.765 NA   NA
 4590281 4590282 YPE_3918 YPE_3919     TRUE 0.998 0.000 0.862 NA   NA
 4590282 4590283 YPE_3919 YPE_3920     TRUE 0.855 126.000 0.510 NA   NA
 4590283 4590284 YPE_3920 YPE_3709C     TRUE 0.900 3.000 0.000 NA   NA
 4590288 4590289 YPE_3924 YPE_3925 pnp nlpI FALSE 0.376 125.000 0.071 1.000   NA
 4590289 4590290 YPE_3925 YPE_3926 nlpI deaD FALSE 0.226 187.000 0.053 1.000   NA
 4590290 4590291 YPE_3926 YPE_3927 deaD   TRUE 0.719 20.000 0.000 NA   NA
 4590291 4590292 YPE_3927 YPE_3928     TRUE 0.533 43.000 0.000 NA   NA
 4590292 4590293 YPE_3928 YPE_3929     TRUE 0.688 24.000 0.000 NA   NA
 4590295 4590296 YPE_3931 YPE_3932     TRUE 0.941 4.000 0.133 1.000 N NA
 4590296 4590297 YPE_3932 YPE_3933   ibeB TRUE 0.993 2.000 0.367 0.051 N NA
 4590298 4590299 YPE_3934 YPE_3935     TRUE 0.999 12.000 0.948 0.002 Y NA
 4590299 4590300 YPE_3935 YPE_3936     FALSE 0.262 110.000 0.000 NA   NA
 4590301 4590302 YPE_3937 YPE_3938     TRUE 0.991 -6.000 0.295 1.000   NA
 4590303 4590304 YPE_3939 YPE_3940     FALSE 0.110 231.000 0.000 1.000   NA
 4590304 4590305 YPE_3940 YPE_3941     TRUE 0.983 24.000 0.400 0.001   NA
 4590306 4590307 YPE_3942 YPE_3943     TRUE 0.998 8.000 0.611 0.051 Y NA
 4590307 4590308 YPE_3943 YPE_3944     TRUE 0.997 19.000 0.611 0.051 Y NA
 4590308 4590309 YPE_3944 YPE_3945     TRUE 0.996 12.000 0.364 0.051 Y NA
 4590309 4590310 YPE_3945 YPE_3946     TRUE 0.962 15.000 0.273 1.000   NA
 4590310 4590311 YPE_3946 YPE_3947     FALSE 0.289 99.000 0.032 1.000   NA
 4590311 4590312 YPE_3947 YPE_3948     FALSE 0.301 152.000 0.056 1.000   NA
 4590313 4590314 YPE_3949 YPE_3950 phnP phnN TRUE 0.983 -9.000 0.214 NA   NA
 4590314 4590315 YPE_3950 YPE_3951 phnN phnM TRUE 0.997 0.000 0.235 NA Y NA
 4590315 4590316 YPE_3951 YPE_3952 phnM phnL TRUE 0.998 -3.000 0.320 1.000 Y NA
 4590316 4590317 YPE_3952 YPE_3953 phnL phnK TRUE 0.875 389.000 0.859 0.017 Y NA
 4590317 4590318 YPE_3953 YPE_3954 phnK phnJ TRUE 0.999 0.000 0.883 1.000 Y NA
 4590318 4590319 YPE_3954 YPE_3955 phnJ phnI TRUE 0.999 -7.000 0.880 1.000 Y NA
 4590319 4590320 YPE_3955 YPE_3956 phnI phnH TRUE 1.000 0.000 0.960 0.002 Y NA
 4590320 4590321 YPE_3956 YPE_3957 phnH phnG TRUE 1.000 0.000 0.967 0.002 Y NA
 4590321 4590322 YPE_3957 YPE_3958 phnG phnF TRUE 0.996 1.000 0.691 1.000 N NA
 4590322 4590323 YPE_3958 YPE_3959 phnF nrdG FALSE 0.018 328.000 0.000 1.000 N NA
 4590323 4590324 YPE_3959 YPE_3960 nrdG nrdD TRUE 0.638 207.000 0.464 1.000 N NA
 4590324 4590325 YPE_3960 YPE_3961 nrdD   FALSE 0.011 434.000 0.000 1.000 N NA
 4590325 4590326 YPE_3961 YPE_3962     TRUE 0.999 2.000 0.550 0.017 Y NA
 4590326 4590327 YPE_3962 YPE_3963     TRUE 0.997 -7.000 0.324 1.000 Y NA
 4590327 4590328 YPE_3963 YPE_3964     TRUE 0.995 19.000 0.441 0.051 Y NA
 4590328 4590329 YPE_3964 YPE_3965     FALSE 0.287 96.000 0.000 NA   NA
 4590334 4590335 YPE_3970 YPE_3971   valS TRUE 0.649 143.000 0.008 1.000 Y NA
 4590335 4590336 YPE_3971 YPE_3972 valS holC TRUE 0.821 13.000 0.089 1.000 N NA
 4590336 4590337 YPE_3972 YPE_3973 holC pepA TRUE 0.778 151.000 0.494 1.000 N NA
 4590338 4590339 YPE_3974 YPE_3975     TRUE 0.998 0.000 0.631 0.061   NA
 4590339 4590340 YPE_3975 YPE_3976     FALSE 0.268 105.000 0.000 NA   NA
 4590340 4590341 YPE_3976 YPE_3977   intB FALSE 0.152 199.000 0.000 NA   NA
 4590341 4590342 YPE_3977 YPE_3978 intB   FALSE 0.221 154.000 0.000 NA   NA
 4590342 4590343 YPE_3978 YPE_3980     TRUE 0.918 -7.000 0.000 NA   NA
 4590345 4590346 YPE_3981 YPE_3982     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4590348 4590349 YPE_3984 YPE_3985     TRUE 0.696 186.000 0.356 NA   NA
 4590349 4590350 YPE_3985 YPE_3986   coaE TRUE 0.973 -3.000 0.110 NA   NA
 4590350 4590351 YPE_3986 YPE_3987 coaE   TRUE 0.823 10.000 0.000 NA   NA
 4590353 4590354 YPE_3989 YPE_3990 hofC hofB TRUE 0.999 -3.000 0.571 1.000 Y NA
 4590354 4590355 YPE_3990 YPE_3991 hofB ppdD TRUE 0.999 -7.000 0.556 NA Y NA
 4590355 4590356 YPE_3991 YPE_3992 ppdD nadC FALSE 0.023 203.000 0.015 NA N NA
 4590357 4590358 YPE_3993 YPE_3994 ampD ampE TRUE 0.618 290.000 0.249 1.000 Y NA
 4590360 4590361 YPE_3996 YPE_3997 pdhR aceE TRUE 0.508 196.000 0.276 1.000 N NA
 4590361 4590362 YPE_3997 YPE_3998 aceE aceF TRUE 0.988 14.000 0.220 1.000 Y NA
 4590362 4590363 YPE_3998 YPE_3999 aceF lpdA TRUE 0.748 303.000 0.463 1.000 Y NA
 4590363 4590364 YPE_3999 YPE_4000 lpdA tnp FALSE 0.038 243.000 0.000 1.000 N NA
 4590364 4590365 YPE_4000 YPE_4001 tnp acnB FALSE 0.007 570.000 0.000 1.000 N NA
 4590365 4590366 YPE_4001 YPE_4002 acnB   FALSE 0.086 299.000 0.068 NA   NA
 4590367 4590368 YPE_4003 YPE_4004   speD FALSE 0.028 438.000 0.000 1.000   NA
 4590368 4590369 YPE_4004 YPE_4005 speD speE TRUE 0.890 78.000 0.162 1.000 Y NA
 4590369 4590370 YPE_4005 YPE_4006 speE   TRUE 0.787 117.000 0.354 NA   NA
 4590371 4590372 YPE_4007 YPE_4008 cueO hpt FALSE 0.023 220.000 0.010 1.000 N NA
 4590374 4590375 YPE_4010 YPE_4011     TRUE 0.999 -3.000 0.688 0.086 Y NA
 4590375 4590376 YPE_4011 YPE_4012     FALSE 0.018 327.000 0.000 1.000 N NA
 4590377 4590378 YPE_4013 YPE_4014 panD panC TRUE 0.530 411.000 0.342 1.000 Y NA
 4590378 4590379 YPE_4014 YPE_4015 panC panB TRUE 0.974 88.000 0.395 0.000 Y NA
 4590379 4590380 YPE_4015 YPE_4016 panB folK TRUE 0.487 266.000 0.117 1.000 Y NA
 4590380 4590381 YPE_4016 YPE_4017 folK pcnB TRUE 0.959 8.000 0.234 1.000 N NA
 4590381 4590382 YPE_4017 YPE_4018 pcnB   TRUE 0.923 56.000 0.131 1.000 Y NA
 4590382 4590383 YPE_4018 YPE_4019   dksA FALSE 0.231 280.000 0.231 1.000 N NA
 4590383 4590384 YPE_4019 YPE_4020 dksA sfsA TRUE 0.484 170.000 0.151 NA   NA
 4590384 4590385 YPE_4020 YPE_4021 sfsA ligT FALSE 0.290 113.000 0.045 NA   NA
 4590386 4590387 YPE_4022 YPE_4023 hrpB mrcB TRUE 0.655 109.000 0.158 0.011 N NA
 4590387 4590388 YPE_4023 YPE_4024 mrcB fhuC FALSE 0.019 322.000 0.000 1.000 N NA
 4590388 4590389 YPE_4024 YPE_4025 fhuC fhuD TRUE 0.723 177.000 0.094 1.000 Y NA
 4590389 4590390 YPE_4025 YPE_4026 fhuD fhuB TRUE 0.999 -3.000 0.500 1.000 Y NA
 4590392 4590393 YPE_4028 YPE_4029     FALSE 0.243 136.000 0.031 1.000   NA
 4590394 4590395 YPE_4030 YPE_4031   btuF TRUE 0.985 0.000 0.213 NA   NA
 4590395 4590396 YPE_4031 YPE_4032 btuF pfs TRUE 0.922 0.000 0.073 1.000 N NA
 4590397 4590398 YPE_4033 YPE_4034 dgt htrA FALSE 0.207 198.000 0.101 1.000 N NA
 4590400 4590401 YPE_4036 YPE_4037 relA   TRUE 0.576 37.000 0.000 NA   NA
 4590401 4590402 YPE_4037 YPE_4038     TRUE 0.844 7.000 0.000 NA   NA
 4590402 4590403 YPE_4038 YPE_4039   pyrG FALSE 0.122 212.000 0.025 1.000   NA
 4590403 4590404 YPE_4039 YPE_4040 pyrG eno FALSE 0.292 81.000 0.068 1.000 N NA
 4590404 4590405 YPE_4040 YPE_4041 eno sodC FALSE 0.014 372.000 0.000 1.000 N NA
 4590405 4590406 YPE_4041 YPE_4042 sodC   FALSE 0.047 104.000 0.004 1.000 N NA
 4590408 4590409 YPE_4044 YPE_4045 cysJ cysI TRUE 1.000 0.000 0.791 0.000 Y NA
 4590409 4590410 YPE_4045 YPE_4047 cysI cysH TRUE 0.934 -3.000 0.000 NA   NA
 4590413 4590414 YPE_4049 YPE_4050   cysG FALSE 0.053 301.000 0.000 NA   NA
 4590414 4590415 YPE_4050 YPE_4051 cysG cysD TRUE 0.995 11.000 0.417 1.000 Y NA
 4590415 4590416 YPE_4051 YPE_4052 cysD cysN TRUE 0.930 93.000 0.574 0.000 N NA
 4590416 4590417 YPE_4052 YPE_4053 cysN cysC TRUE 0.997 2.000 0.340 1.000 Y NA
 4590417 4590418 YPE_4053 YPE_4054 cysC   TRUE 0.498 191.000 0.198 NA   NA
 4590418 4590419 YPE_4054 YPE_4055     FALSE 0.043 314.000 0.028 NA   NA
 4590419 4590420 YPE_4055 YPE_4056   ispD TRUE 0.960 4.000 0.185 1.000 N NA
 4590420 4590421 YPE_4056 YPE_4057 ispD ispF TRUE 0.935 139.000 0.419 1.000 Y NA
 4590421 4590422 YPE_4057 YPE_4058 ispF truD TRUE 0.950 11.000 0.173 1.000   NA
 4590422 4590423 YPE_4058 YPE_4059 truD surE TRUE 0.983 -22.000 0.235 1.000   NA
 4590423 4590424 YPE_4059 YPE_4060 surE pcm TRUE 0.993 -6.000 0.353 1.000   NA
 4590424 4590425 YPE_4060 YPE_4061 pcm nlpD FALSE 0.111 104.000 0.030 1.000 N NA
 4590425 4590426 YPE_4061 YPE_4062 nlpD rpoS TRUE 0.661 55.000 0.142 1.000 N NA
 4590427 4590428 YPE_4063 YPE_4064 mutS rpiB FALSE 0.006 794.000 0.000 1.000 N NA
 4590429 4590430 YPE_4065 YPE_4066     TRUE 0.507 64.000 0.000 0.016 N NA
 4590430 4590431 YPE_4066 YPE_4067   dhaK FALSE 0.243 87.000 0.058 1.000 N NA
 4590431 4590432 YPE_4067 YPE_4068 dhaK   TRUE 0.996 7.000 0.211 0.001 Y NA
 4590433 4590434 YPE_4069 YPE_4070   arsB FALSE 0.007 567.000 0.000 1.000 N NA
 4590434 4590435 YPE_4070 YPE_4071 arsB arsR FALSE 0.148 85.000 0.000 1.000 N NA
 4590435 4590436 YPE_4071 YPE_4072 arsR   FALSE 0.091 247.000 0.000 1.000   NA
 4590436 4590437 YPE_4072 YPE_4073     FALSE 0.157 196.000 0.000 NA   NA
 4590437 4590438 YPE_4073 YPE_4074     FALSE 0.028 421.000 0.000 NA   NA
 4590438 4590439 YPE_4074 YPE_4075     FALSE 0.204 65.000 0.000 1.000 N NA
 4590440 4590442 YPE_4077 YPE_4078     FALSE 0.027 433.000 0.000 NA   NA
 4590443 4590444 YPE_4079 YPE_4080 map   TRUE 0.994 -3.000 0.410 NA   NA
 4590444 4590445 YPE_4080 YPE_4081   fumA FALSE 0.245 129.000 0.000 NA   NA
 4590445 4590446 YPE_4081 YPE_4082 fumA lyxK FALSE 0.012 398.000 0.000 1.000 N NA
 4590446 4590447 YPE_4082 YPE_4083 lyxK sgbU TRUE 0.999 11.000 1.000 0.014 Y NA
 4590447 4590448 YPE_4083 YPE_4084 sgbU   TRUE 0.807 206.000 0.250 1.000 Y NA
 4590448 4590449 YPE_4084 YPE_4085     TRUE 0.999 13.000 0.938 0.011 Y NA
 4590449 4590450 YPE_4085 YPE_4086     TRUE 1.000 -7.000 0.941 0.011 Y NA
 4590450 4590451 YPE_4086 YPE_4087   tnp FALSE 0.101 151.000 0.000 1.000 N NA
 4590451 4590452 YPE_4087 YPE_4088 tnp   FALSE 0.028 251.000 0.000 NA N NA
 4590452 4590453 YPE_4088 YPE_4089     TRUE 0.945 62.000 0.235 NA Y NA
 4590454 4590455 YPE_4090 YPE_4091 araD dmsA FALSE 0.010 463.000 0.000 1.000 N NA
 4590455 4590456 YPE_4091 YPE_4092 dmsA dmsB TRUE 0.987 12.000 0.103 0.032 Y NA
 4590456 4590457 YPE_4092 YPE_4093 dmsB dmsC TRUE 0.994 2.000 0.500 1.000   NA
 4590457 4590458 YPE_4093 YPE_4094 dmsC dmsD TRUE 0.475 146.000 0.125 1.000   NA
 4590459 4590460 YPE_4095 YPE_4096 cybB cybC1 TRUE 0.774 148.000 0.000 0.032 Y NA
 4590460 4590461 YPE_4096 YPE_4097 cybC1 katY TRUE 0.477 77.000 0.000 0.004 N NA
 4590462 4590463 YPE_4098 YPE_4099     TRUE 0.762 93.000 0.280 NA   NA
 4590463 4590464 YPE_4099 YPE_4100     TRUE 0.990 0.000 0.292 NA   NA
 4590464 4590465 YPE_4100 YPE_4101     TRUE 1.000 -3.000 0.793 0.011 Y NA
 4590465 4590466 YPE_4101 YPE_4102     TRUE 0.450 256.000 0.075 1.000 Y NA
 4590466 4590467 YPE_4102 YPE_4103     TRUE 1.000 -7.000 0.860 0.001 Y NA
 4590467 4590468 YPE_4103 YPE_4104     TRUE 0.993 3.000 0.596 1.000 N NA
 4590468 4590469 YPE_4104 YPE_4105     TRUE 0.828 21.000 0.127 1.000 N NA
 4590470 4590471 YPE_4106 YPE_4107     FALSE 0.090 248.000 0.000 1.000   NA
 4590472 4590473 YPE_4108 YPE_4109   recA FALSE 0.400 115.000 0.082 NA   NA
 4590473 4590474 YPE_4109 YPE_4110 recA recX TRUE 0.727 138.000 0.296 1.000   NA
 4590474 4590475 YPE_4110 YPE_4111 recX alaS FALSE 0.388 140.000 0.085 1.000   NA
 4590475 4590476 YPE_4111 YPE_4112 alaS csrA FALSE 0.021 250.000 0.020 1.000 N NA
 4590476 4590477 YPE_4112 YPE_4113 csrA   FALSE 0.036 363.000 0.000 NA   NA
 4590477 4590478 YPE_4113 YPE_4114     TRUE 0.831 9.000 0.000 NA   NA
 4590478 4590479 YPE_4114 YPE_4115     TRUE 0.445 58.000 0.000 NA   NA
 4590479 4590480 YPE_4115 YPE_4116     FALSE 0.319 80.000 0.000 NA   NA
 4590480 4590481 YPE_4116 YPE_4117     FALSE 0.027 423.000 0.000 NA   NA
 4590481 4590482 YPE_4117 YPE_4118     TRUE 0.958 -3.000 0.067 NA   NA
 4590482 4590483 YPE_4118 YPE_4119   gshA TRUE 0.435 83.000 0.071 NA   NA
 4590485 4590486 YPE_4121 YPE_4122 luxS tnp FALSE 0.060 204.000 0.000 1.000 N NA
 4590486 4590487 YPE_4122 YPE_4123 tnp tnp TRUE 0.505 253.000 0.000 0.022 Y NA
 4590488 4590489 YPE_4124 YPE_4125 yfjD   TRUE 0.856 69.000 0.349 NA   NA
 4590490 4590491 YPE_4126 YPE_4127 ffh rpsP TRUE 0.491 228.000 0.361 1.000 N NA
 4590491 4590492 YPE_4127 YPE_4128 rpsP rimM TRUE 0.993 22.000 0.342 0.011 Y NA
 4590492 4590493 YPE_4128 YPE_4129 rimM trmD TRUE 0.992 39.000 0.672 1.000 Y NA
 4590493 4590494 YPE_4129 YPE_4130 trmD rplS TRUE 0.971 81.000 0.567 1.000 Y NA
 4590494 4590495 YPE_4130 YPE_4131 rplS tnp FALSE 0.054 212.000 0.000 1.000 N NA
 4590496 4590497 YPE_4132 YPE_4133     FALSE 0.046 323.000 0.000 NA   NA
 4590497 4590499 YPE_4133 YPE_4135     FALSE 0.027 429.000 0.000 NA   NA
 4590500 4590501 YPE_4136 YPE_4137 aroF tyrA TRUE 0.961 13.000 0.023 1.000 Y NA
 4590502 4590504 YPE_4138 YPE_4139 pheA   FALSE 0.346 72.000 0.000 NA   NA
 4590504 4590505 YPE_4139 YPE_4140     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4590507 4590508 YPE_4143 YPE_4144     FALSE 0.026 355.000 0.004 NA   NA
 4590509 4590510 YPE_4145 YPE_4146 rluD   TRUE 0.978 2.000 0.168 1.000   NA
 4590510 4590511 YPE_4146 YPE_4147   clpB TRUE 0.458 130.000 0.108 1.000   NA
 4590511 4590512 YPE_4147 YPE_4148 clpB   FALSE 0.021 517.000 0.000 NA   NA
 4590513 4590514 YPE_4341 YPE_4342 rop   FALSE 0.014 1037.000 0.000 NA   NA
 4590514 4590515 YPE_4342 YPE_4343     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4590516 4590517 YPE_4344 YPE_4345     TRUE 0.993 0.000 0.400 NA   NA
 4590518 4590519 YPE_4346 YPE_4347 pla   FALSE 0.091 243.000 0.000 NA   NA
 3661901 3661902 YPE_4149 YPE_4150     TRUE 0.987 -7.000 0.250 NA   NA
 3661903 3661904 YPE_4151 YPE_4152   yopE TRUE 0.912 2.000 0.000 NA   NA
 3661908 3661909 YPE_4156 YPE_4157     TRUE 0.989 0.000 0.000 1.000 Y NA
 3661910 3661911 YPE_4158 YPE_4159     TRUE 0.998 0.000 1.000 1.000   NA
 3661911 3661912 YPE_4159 YPE_4160   sycH FALSE 0.044 343.000 0.000 1.000   NA
 3661913 3661914 YPE_4161 YPE_4162     TRUE 0.835 24.000 0.000 0.069   NA
 3661914 3661915 YPE_4162 YPE_4163     FALSE 0.277 100.000 0.000 NA   NA
 3661915 3661916 YPE_4163 YPE_4164     FALSE 0.017 622.000 0.000 NA   NA
 3661921 3661922 YPE_4171 YPE_4172     FALSE 0.208 166.000 0.000 NA   NA
 3661922 3661923 YPE_4172 YPE_4173     TRUE 0.940 24.000 0.250 1.000   NA
 3661923 3661924 YPE_4173 YPE_4175   nuc FALSE 0.028 417.000 0.000 NA   NA
 3661924 3661925 YPE_4175 YPE_4176 nuc   FALSE 0.234 138.000 0.000 NA   NA
 3661927 3661928 YPE_4178 YPE_4179     TRUE 0.918 -7.000 0.000 NA   NA
 3661928 3661929 YPE_4179 YPE_4180     FALSE 0.013 1807.000 0.000 NA   NA
 3661929 3661930 YPE_4180 YPE_4181   sycO FALSE 0.095 240.000 0.000 NA   NA
 3661930 3661931 YPE_4181 YPE_4182 sycO ypkA TRUE 0.979 8.000 0.308 1.000   NA
 3661931 3661932 YPE_4182 YPE_4183 ypkA yopJ FALSE 0.030 396.000 0.000 NA   NA
 3661932 3661933 YPE_4183 YPE_4184 yopJ   FALSE 0.025 456.000 0.000 NA   NA
 3661935 3661936 YPE_4186 YPE_4187   yopH FALSE 0.062 283.000 0.000 NA   NA
 3661937 3661938 YPE_4188 YPE_4189     TRUE 0.789 13.000 0.000 NA   NA
 3661938 3661939 YPE_4189 YPE_4190     TRUE 0.975 -3.000 0.000 0.011   NA
 3661939 3661940 YPE_4190 YPE_4191     TRUE 0.705 24.000 0.000 1.000   NA
 3661940 3661941 YPE_4191 YPE_4192   lcrQ FALSE 0.021 548.000 0.000 1.000   NA
 3661941 3661942 YPE_4192 YPE_4193 lcrQ yscL FALSE 0.118 225.000 0.000 1.000   NA
 3661942 3661943 YPE_4193 YPE_4194 yscL yscK TRUE 0.996 -54.000 0.727 1.000   NA
 3661943 3661944 YPE_4194 YPE_4195 yscK yscJ TRUE 0.998 0.000 0.800 1.000   NA
 3661944 3661945 YPE_4195 YPE_4196 yscJ yscI TRUE 0.990 7.000 0.333 0.010   NA
 3661945 3661946 YPE_4196 YPE_4197 yscI yscH TRUE 0.995 1.000 0.333 0.006   NA
 3661946 3661947 YPE_4197 YPE_4198 yscH yscG TRUE 0.999 -3.000 0.900 0.006   NA
 3661947 3661948 YPE_4198 YPE_4199 yscG yscF TRUE 0.997 2.000 0.556 0.006   NA
 3661948 3661949 YPE_4199 YPE_4200 yscF yscE TRUE 0.996 1.000 0.417 0.006   NA
 3661949 3661950 YPE_4200 YPE_4201 yscE yscD TRUE 0.991 -3.000 0.268 NA   NA
 3661950 3661951 YPE_4201 YPE_4202 yscD yscC TRUE 0.988 -3.000 0.220 NA   NA
 3661951 3661952 YPE_4202 YPE_4203 yscC yscB TRUE 0.995 6.000 0.750 1.000   NA
 3661952 3661953 YPE_4203 YPE_4204 yscB yscA FALSE 0.110 226.000 0.000 NA   NA
 3661953 3661954 YPE_4204 YPE_4205 yscA lcrF TRUE 0.639 79.000 0.154 NA   NA
 3661954 3661955 YPE_4205 YPE_4206 lcrF virG TRUE 0.557 124.000 0.154 NA   NA
 3661955 3661956 YPE_4206 YPE_4207 virG yscU FALSE 0.018 576.000 0.000 NA   NA
 3661956 3661957 YPE_4207 YPE_4208 yscU yscT TRUE 0.999 0.000 0.548 0.061 Y NA
 3661957 3661958 YPE_4208 YPE_4209 yscT yscS TRUE 0.994 -3.000 0.000 0.061 Y NA
 3661958 3661959 YPE_4209 YPE_4210 yscS yscR TRUE 0.993 2.000 0.000 0.010 Y NA
 3661959 3661960 YPE_4210 YPE_4211 yscR yscQ TRUE 0.999 -3.000 0.529 1.000 Y NA
 3661960 3661961 YPE_4211 YPE_4212 yscQ yscP TRUE 0.994 -3.000 0.235 0.008   NA
 3661961 3661962 YPE_4212 YPE_4213 yscP yscO TRUE 0.978 0.000 0.150 NA   NA
 3661962 3661963 YPE_4213 YPE_4214 yscO yscN TRUE 0.992 -3.000 0.300 NA   NA
 3661964 3661965 YPE_4215 YPE_4216 yopN tyeA TRUE 0.962 -19.000 0.125 NA   NA
 3661965 3661966 YPE_4216 YPE_4217 tyeA sycN TRUE 0.981 -13.000 0.214 NA   NA
 3661966 3661967 YPE_4217 YPE_4218 sycN yscX TRUE 0.934 -3.000 0.000 NA   NA
 3661967 3661968 YPE_4218 YPE_4219 yscX yscY TRUE 0.934 -3.000 0.000 NA   NA
 3661968 3661969 YPE_4219 YPE_4220 yscY lcrD TRUE 0.937 -13.000 0.062 1.000   NA
 3661969 3661970 YPE_4220 YPE_4221 lcrD lcrR TRUE 0.991 -3.000 0.281 NA   NA
 3661970 3661971 YPE_4221 YPE_4222 lcrR lcrG TRUE 0.984 42.000 1.000 NA   NA
 3661971 3661972 YPE_4222 YPE_4223 lcrG lcrV TRUE 0.995 2.000 0.556 NA   NA
 3661972 3661973 YPE_4223 YPE_4224 lcrV lcrH TRUE 0.961 13.000 0.235 1.000   NA
 3661973 3661974 YPE_4224 YPE_4225 lcrH yopB TRUE 0.995 -22.000 0.632 1.000   NA
 3661974 3661975 YPE_4225 YPE_4226 yopB yopD TRUE 0.980 19.000 0.526 NA   NA
 3661975 3661976 YPE_4226 YPE_4227 yopD yopM FALSE 0.013 1729.000 0.000 NA   NA
 3661977 3661978 YPE_4228 YPE_4229     FALSE 0.014 876.000 0.000 NA   NA
 3661980 3661981 YPE_4231 YPE_4232 sycT yopT TRUE 0.997 0.000 0.500 0.006   NA
 3661982 3661983 YPE_4233 YPE_4235 yopK ylpA FALSE 0.022 489.000 0.000 NA   NA
 3661983 3661984 YPE_4235 YPE_4236 ylpA   FALSE 0.275 101.000 0.000 NA   NA
 3661984 3661985 YPE_4236 YPE_4237     TRUE 0.960 24.000 0.250 0.069   NA
 3661985 3661986 YPE_4237 YPE_4238     FALSE 0.015 1106.000 0.000 1.000   NA
 3661986 3661900 YPE_4238 YPE_4239   sopB TRUE 0.991 0.000 0.400 1.000 N NA
 3661900 3661901 YPE_4239 YPE_4149 sopB   FALSE 0.088 1229.000 0.000 1.000 Y NA
 3661988 3661989 YPE_4240 YPE_4241 parB   FALSE 0.035 379.000 0.000 1.000   NA
 3661991 3661992 YPE_4243 YPE_4244     TRUE 0.997 0.000 0.667 NA   NA
 3661992 3661993 YPE_4244 YPE_4245     TRUE 0.995 -61.000 0.667 NA   NA
 3661993 3661994 YPE_4245 YPE_4246     TRUE 0.959 54.000 0.667 NA   NA
 3661994 3661995 YPE_4246 YPE_4247     FALSE 0.030 399.000 0.000 NA   NA
 3661995 3661996 YPE_4247 YPE_4248     FALSE 0.016 713.000 0.000 NA   NA
 3661996 3661997 YPE_4248 YPE_4249     FALSE 0.339 73.000 0.000 NA   NA
 3661997 3661998 YPE_4249 YPE_4250     FALSE 0.304 124.000 0.000 0.069 N NA
 3661998 3661999 YPE_4250 YPE_4251     TRUE 0.990 -3.000 0.000 1.000 Y NA
 3661999 3662000 YPE_4251 YPE_4252     FALSE 0.019 552.000 0.000 NA   NA
 3662002 3662003 YPE_4254 YPE_4255     TRUE 0.947 120.000 1.000 NA   NA
 3662003 3662004 YPE_4255 YPE_4256     TRUE 0.419 61.000 0.033 NA   NA
 3662004 3662005 YPE_4256 YPE_4257     TRUE 0.924 0.000 0.000 NA   NA
 3662005 3662006 YPE_4257 YPE_4258     TRUE 0.900 3.000 0.000 NA   NA
 3662006 3662007 YPE_4258 YPE_4259     FALSE 0.216 91.000 0.002 NA   NA
 3662007 3662008 YPE_4259 YPE_4260     TRUE 0.995 4.000 0.667 NA   NA
 3662008 3662009 YPE_4260 YPE_4261     TRUE 0.881 154.000 0.667 NA   NA
 3662009 3662010 YPE_4261 YPE_4262     TRUE 0.996 -16.000 0.667 NA   NA
 3662010 3662011 YPE_4262 YPE_4263     TRUE 0.968 68.000 1.000 NA   NA
 3662011 3662012 YPE_4263 YPE_4264     TRUE 0.984 41.000 1.000 NA   NA
 3662012 3662013 YPE_4264 YPE_4265     TRUE 0.934 -3.000 0.000 NA   NA
 3662013 3662014 YPE_4265 YPE_4266     TRUE 0.997 -3.000 0.667 NA   NA
 3662016 3662017 YPE_4268 YPE_4269     FALSE 0.330 76.000 0.000 NA   NA
 3662019 3662020 YPE_4271 YPE_4272     TRUE 0.946 -3.000 0.049 NA   NA
 3662020 3662021 YPE_4272 YPE_4273     TRUE 0.984 9.000 0.400 NA   NA
 3662021 3662022 YPE_4273 YPE_4274     TRUE 0.992 -10.000 0.400 NA   NA
 3662022 3662023 YPE_4274 YPE_4275     TRUE 0.710 13.000 0.002 NA   NA
 3662023 3662024 YPE_4275 YPE_4276     FALSE 0.140 209.000 0.000 1.000   NA
 3662024 3662025 YPE_4276 YPE_4277     FALSE 0.161 194.000 0.000 NA   NA
 3662025 3662026 YPE_4277 YPE_4278     FALSE 0.136 206.000 0.000 NA   NA
 3662027 3662028 YPE_4279 YPE_4280     TRUE 0.921 85.000 0.667 NA   NA
 3662028 3662029 YPE_4280 YPE_4281     FALSE 0.046 322.000 0.000 NA   NA
 3662029 3662030 YPE_4281 YPE_4282     TRUE 0.957 5.000 0.143 NA   NA
 3662030 3662031 YPE_4282 YPE_4283     TRUE 0.723 60.000 0.143 NA   NA
 3662031 3662032 YPE_4283 YPE_4284     TRUE 0.973 3.000 0.167 NA   NA
 3662033 3662034 YPE_4285 YPE_4286     TRUE 0.998 0.000 0.222 0.069 Y NA
 3662034 3662035 YPE_4286 YPE_4287     TRUE 0.934 -63.000 0.068 1.000   NA
 3662035 3662036 YPE_4287 YPE_4288     TRUE 0.918 -7.000 0.000 NA   NA
 3662036 3662037 YPE_4288 YPE_4289     TRUE 0.934 -3.000 0.000 NA   NA
 3662037 3662038 YPE_4289 YPE_4290     TRUE 0.823 10.000 0.000 NA   NA
 3662038 3662039 YPE_4290 YPE_4291     TRUE 0.830 196.000 0.667 NA   NA
 3662039 3662040 YPE_4291 YPE_4292     TRUE 0.996 3.000 0.667 1.000   NA
 3662040 3662041 YPE_4292 YPE_4293     TRUE 0.968 19.000 0.375 NA   NA
 3662041 3662042 YPE_4293 YPE_4294     TRUE 0.940 23.000 0.250 NA   NA
 3662042 3662043 YPE_4294 YPE_4295     TRUE 0.816 27.000 0.100 NA   NA
 3662043 3662044 YPE_4295 YPE_4296     TRUE 0.537 75.000 0.100 NA   NA
 3662044 3662045 YPE_4296 YPE_4297     TRUE 0.967 44.000 0.667 NA   NA
 3662045 3662046 YPE_4297 YPE_4298     TRUE 0.998 0.000 1.000 NA   NA
 3662046 3662047 YPE_4298 YPE_4299     TRUE 0.996 -16.000 0.667 NA   NA
 3662047 3662048 YPE_4299 YPE_4300     TRUE 0.996 -9.000 0.667 NA   NA
 3662048 3662049 YPE_4300 YPE_4301     TRUE 0.996 2.000 0.667 NA   NA
 3662049 3662050 YPE_4301 YPE_4302     TRUE 0.831 75.000 0.333 NA   NA
 3662050 3662051 YPE_4302 YPE_4303     TRUE 0.432 60.000 0.000 NA   NA
 3662051 3662052 YPE_4303 YPE_4304     FALSE 0.317 81.000 0.000 NA   NA
 3662052 3662053 YPE_4304 YPE_4305     TRUE 0.994 8.000 0.750 NA   NA
 3662053 3662054 YPE_4305 YPE_4306     TRUE 0.538 42.000 0.000 NA   NA
 3662054 3662055 YPE_4306 YPE_4307     TRUE 0.451 57.000 0.000 NA   NA
 3662055 3662056 YPE_4307 YPE_4308     TRUE 0.994 -7.000 0.444 NA   NA
 3662056 3662057 YPE_4308 YPE_4309     TRUE 0.997 -12.000 0.800 NA   NA
 3662057 3662058 YPE_4309 YPE_4310     TRUE 0.968 16.000 0.333 NA   NA
 3662058 3662059 YPE_4310 YPE_4311     TRUE 0.734 18.000 0.000 NA   NA
 3662059 3662060 YPE_4311 YPE_4312     FALSE 0.317 81.000 0.000 NA   NA
 3662060 3662061 YPE_4312 YPE_4313     TRUE 0.934 -3.000 0.000 NA   NA
 3662061 3662062 YPE_4313 YPE_4314     FALSE 0.294 93.000 0.000 NA   NA
 3662063 3662064 YPE_4315 YPE_4316     TRUE 0.990 -3.000 0.000 1.000 Y NA
 3662064 3662065 YPE_4316 YPE_4317     FALSE 0.013 3308.000 0.000 1.000   NA
 3662065 3662066 YPE_4317 YPE_4318     TRUE 0.912 97.000 0.667 NA   NA
 3662066 3662067 YPE_4318 YPE_4319     TRUE 0.903 110.000 0.667 NA   NA
 3662069 3662070 YPE_4321 YPE_4322   caf1 FALSE 0.016 685.000 0.000 NA   NA
 3662070 3662071 YPE_4322 YPE_4323 caf1 caf1A TRUE 0.960 81.000 1.000 NA   NA
 3662071 3662072 YPE_4323 YPE_4324 caf1A caf1M TRUE 0.995 25.000 0.667 1.000 Y NA
 3662073 3662074 YPE_4325 YPE_4326 caf1R   FALSE 0.051 349.000 0.000 0.068 N NA
 3662074 3662075 YPE_4326 YPE_4327     FALSE 0.222 469.000 0.000 0.022 Y NA
 3662076 3662077 YPE_4329 YPE_4330     FALSE 0.195 174.000 0.000 NA   NA
 3662077 3662078 YPE_4330 YPE_4331     TRUE 0.993 -85.000 0.500 NA   NA
 3662080 3662081 YPE_4333 YPE_4334 ymt   FALSE 0.210 243.000 0.000 0.014   NA
 3662083 3662084 YPE_4336 YPE_4337     TRUE 0.711 21.000 0.000 NA   NA
 3662084 3662085 YPE_4337 YPE_4338     FALSE 0.151 200.000 0.000 NA   NA
 3662085 3662086 YPE_4338 YPE_4339     TRUE 0.990 0.000 0.300 NA   NA
 3661987 3661988 YPE_4340 YPE_4240 parA parB TRUE 0.994 3.000 0.667 1.000 N NA