MicrobesOnline Operon Predictions for Pseudomonas mendocina ymp

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 3613187 3613188 Pmen_0001 Pmen_0002 dnaA   TRUE 0.959 35.000 0.328 1.000 Y NA
 3613188 3613189 Pmen_0002 Pmen_0003   recF TRUE 0.993 8.000 0.318 1.000 Y NA
 3613189 3613190 Pmen_0003 Pmen_0004 recF gyrB TRUE 0.996 5.000 0.249 0.005 Y NA
 3613191 3613192 Pmen_0005 Pmen_0006     TRUE 0.994 2.000 0.595 1.000   NA
 3613192 3613193 Pmen_0006 Pmen_0007     TRUE 0.942 10.000 0.140 NA   NA
 3613193 3613194 Pmen_0007 Pmen_0008     TRUE 0.935 -10.000 0.090 NA   NA
 3613194 3613195 Pmen_0008 Pmen_0009     TRUE 0.984 0.000 0.285 NA   NA
 3613195 3613196 Pmen_0009 Pmen_0010     TRUE 0.955 26.000 0.215 NA Y NA
 3613196 3613197 Pmen_0010 Pmen_0011     FALSE 0.285 211.000 0.000 1.000 Y NA
 3613197 3613198 Pmen_0011 Pmen_0012     TRUE 0.959 14.000 0.310 1.000 N NA
 3613198 3613199 Pmen_0012 Pmen_0013   glyS TRUE 0.437 70.000 0.123 1.000 N NA
 3613199 3613200 Pmen_0013 Pmen_0014 glyS glyQ TRUE 0.999 -3.000 0.651 0.001 Y NA
 3613201 3613202 Pmen_0015 Pmen_0016     FALSE 0.205 94.000 0.017 1.000 N NA
 3613202 3613203 Pmen_0016 Pmen_0017     FALSE 0.287 117.000 0.053 NA   NA
 3613203 3613204 Pmen_0017 Pmen_0018     FALSE 0.016 378.000 0.000 NA   NA
 3613204 3613205 Pmen_0018 Pmen_0019     FALSE 0.068 177.000 0.000 NA   NA
 3613205 3613206 Pmen_0019 Pmen_0020     TRUE 0.995 0.000 0.667 NA   NA
 3613207 3613208 Pmen_0021 Pmen_0022     TRUE 0.997 3.000 1.000 NA   NA
 3613208 3613209 Pmen_0022 Pmen_0023     TRUE 0.989 0.000 0.375 NA   NA
 3613209 3613210 Pmen_0023 Pmen_0024     TRUE 0.980 2.000 0.250 NA   NA
 3613210 3613211 Pmen_0024 Pmen_0025     TRUE 0.979 -13.000 0.333 NA   NA
 3613211 3613212 Pmen_0025 Pmen_0026     TRUE 0.611 161.000 0.385 NA   NA
 3613212 3613213 Pmen_0026 Pmen_0027     TRUE 0.987 -10.000 0.462 NA   NA
 3613213 3613214 Pmen_0027 Pmen_0028     TRUE 0.994 -3.000 0.600 NA   NA
 3613214 3613215 Pmen_0028 Pmen_0029     TRUE 0.979 11.000 0.222 0.013   NA
 3613215 3613216 Pmen_0029 Pmen_0030     TRUE 0.546 44.000 0.074 NA   NA
 3613216 3613217 Pmen_0030 Pmen_0031     TRUE 0.806 52.000 0.400 NA   NA
 3613217 3613218 Pmen_0031 Pmen_0032     FALSE 0.024 296.000 0.000 NA   NA
 3613218 3613219 Pmen_0032 Pmen_0033     FALSE 0.214 384.000 0.000 0.007 Y NA
 3613219 3613220 Pmen_0033 Pmen_0034     FALSE 0.018 359.000 0.000 NA   NA
 3613220 3613221 Pmen_0034 Pmen_0035     FALSE 0.384 31.000 0.000 NA   NA
 3613221 3613222 Pmen_0035 Pmen_0036     TRUE 0.745 -1733.000 0.000 NA   NA
 3613222 3613223 Pmen_0036 Pmen_0037     TRUE 0.531 20.000 0.000 NA   NA
 3613224 3613225 Pmen_0038 Pmen_0039     TRUE 0.857 0.000 0.000 1.000   NA
 3613225 3613226 Pmen_0039 Pmen_0040     TRUE 0.933 17.000 0.250 NA   NA
 3613226 3613227 Pmen_0040 Pmen_0041     TRUE 0.981 -3.000 0.250 NA   NA
 3613227 3613228 Pmen_0041 Pmen_0042     TRUE 0.978 3.000 0.250 NA   NA
 3613228 3613229 Pmen_0042 Pmen_0043     TRUE 0.996 -10.000 1.000 NA   NA
 3613229 3613230 Pmen_0043 Pmen_0044     TRUE 0.989 -3.000 0.400 NA   NA
 3613230 3613231 Pmen_0044 Pmen_0045     TRUE 0.953 -10.000 0.154 NA   NA
 3613231 3613232 Pmen_0045 Pmen_0046     TRUE 0.994 -3.000 0.231 1.000 Y NA
 3613232 3613233 Pmen_0046 Pmen_0047     TRUE 0.996 8.000 0.318 0.013 Y NA
 3613233 3613234 Pmen_0047 Pmen_0048     TRUE 0.996 1.000 0.273 0.077 Y NA
 3613234 3613235 Pmen_0048 Pmen_0049     TRUE 0.999 -3.000 0.875 0.077 Y NA
 3613235 3613236 Pmen_0049 Pmen_0050     FALSE 0.060 187.000 0.000 NA   NA
 3613237 3613238 Pmen_0051 Pmen_0052   trkA FALSE 0.134 89.000 0.000 1.000   NA
 3613238 3613239 Pmen_0052 Pmen_0053 trkA   TRUE 0.921 12.000 0.122 1.000 N NA
 3613239 3613240 Pmen_0053 Pmen_0054   fmt TRUE 0.995 -3.000 0.305 1.000 Y NA
 3613240 3613241 Pmen_0054 Pmen_0055 fmt def TRUE 0.879 53.000 0.105 0.020 Y NA
 3613242 3613243 Pmen_0056 Pmen_0057     FALSE 0.291 87.000 0.043 1.000   NA
 3613243 3613244 Pmen_0057 Pmen_0058     FALSE 0.229 67.000 0.023 NA N NA
 3613246 3613247 Pmen_0060 Pmen_0061   aroE FALSE 0.364 108.000 0.093 1.000 N NA
 3613248 3613249 Pmen_0062 Pmen_0063     TRUE 0.831 47.000 0.259 0.071 N NA
 3613249 3613250 Pmen_0063 Pmen_0064     TRUE 0.736 44.000 0.218 1.000 N NA
 3613251 3613252 Pmen_0065 Pmen_0066   pbpG FALSE 0.120 116.000 0.000 1.000 N NA
 3613255 3613256 Pmen_0069 Pmen_0070   trpA FALSE 0.093 156.000 0.000 1.000 N NA
 3613256 3613257 Pmen_0070 Pmen_0071 trpA   TRUE 0.998 -3.000 0.344 0.001 Y NA
 3613258 3613259 Pmen_0072 Pmen_0073     TRUE 0.791 5.000 0.000 NA   NA
 3613259 3613260 Pmen_0073 Pmen_0074     FALSE 0.179 54.000 0.000 NA   NA
 3613260 3613261 Pmen_0074 Pmen_0075     FALSE 0.117 99.000 0.000 NA   NA
 3613264 3613265 Pmen_0078 Pmen_0079     FALSE 0.140 165.000 0.019 NA   NA
 3613265 3613266 Pmen_0079 Pmen_0080     TRUE 0.935 11.000 0.140 NA   NA
 3613266 3613267 Pmen_0080 Pmen_0081     TRUE 0.531 20.000 0.000 NA   NA
 3613269 3613270 Pmen_0083 Pmen_0084     TRUE 0.891 41.000 0.037 0.032 Y NA
 3613270 3613271 Pmen_0084 Pmen_0085     FALSE 0.012 570.000 0.000 1.000 N NA
 3613272 3613273 Pmen_0086 Pmen_0087     TRUE 0.997 -7.000 0.524 NA Y NA
 3613273 3613274 Pmen_0087 Pmen_0088     FALSE 0.174 105.000 0.008 1.000 N NA
 3613274 3613275 Pmen_0088 Pmen_0089     FALSE 0.013 436.000 0.000 NA   NA
 3613275 3613276 Pmen_0089 Pmen_0090     FALSE 0.362 55.000 0.040 NA   NA
 3613276 3613277 Pmen_0090 Pmen_0091     TRUE 0.642 26.000 0.030 NA   NA
 3613277 3613278 Pmen_0091 Pmen_0092     TRUE 0.992 7.000 0.627 NA   NA
 3613278 3613279 Pmen_0092 Pmen_0093     TRUE 0.896 -10.000 0.034 NA   NA
 3613279 3613280 Pmen_0093 Pmen_0094     TRUE 0.790 -7.000 0.000 NA   NA
 3613280 3613281 Pmen_0094 Pmen_0095     FALSE 0.384 31.000 0.000 NA   NA
 3613281 3613282 Pmen_0095 Pmen_0096     TRUE 0.994 -36.000 0.863 NA   NA
 3613282 3613283 Pmen_0096 Pmen_0097     TRUE 0.943 12.000 0.196 NA   NA
 3613283 3613284 Pmen_0097 Pmen_0098     TRUE 0.971 -13.000 0.118 0.020 N NA
 3613284 3613285 Pmen_0098 Pmen_0099     FALSE 0.209 48.000 0.000 NA   NA
 3613285 3613286 Pmen_0099 Pmen_0100     TRUE 0.512 21.000 0.000 NA   NA
 3613286 3613287 Pmen_0100 Pmen_0101     TRUE 0.981 6.000 0.333 NA   NA
 3613287 3613288 Pmen_0101 Pmen_0102     TRUE 0.997 -3.000 1.000 NA   NA
 3613288 3613289 Pmen_0102 Pmen_0103     TRUE 0.996 3.000 0.833 NA   NA
 3613289 3613290 Pmen_0103 Pmen_0104     TRUE 0.989 -3.000 0.400 NA   NA
 3613290 3613291 Pmen_0104 Pmen_0105     TRUE 0.964 0.000 0.125 NA   NA
 3613291 3613292 Pmen_0105 Pmen_0106     TRUE 0.998 -3.000 0.625 1.000 Y NA
 3613292 3613293 Pmen_0106 Pmen_0107     TRUE 0.930 25.000 0.364 NA   NA
 3613293 3613294 Pmen_0107 Pmen_0108     FALSE 0.191 51.000 0.000 NA   NA
 3613294 3613295 Pmen_0108 Pmen_0109     TRUE 0.834 -3.000 0.000 NA   NA
 3613295 3613296 Pmen_0109 Pmen_0110     FALSE 0.126 79.000 0.000 NA   NA
 3613296 3613297 Pmen_0110 Pmen_0111     FALSE 0.110 128.000 0.000 NA   NA
 3613297 3613298 Pmen_0111 Pmen_0112     FALSE 0.121 84.000 0.000 NA   NA
 3613298 3613299 Pmen_0112 Pmen_0113     FALSE 0.053 197.000 0.000 NA   NA
 3613300 3613301 Pmen_0114 Pmen_0115     TRUE 0.552 19.000 0.000 NA   NA
 3613301 3613302 Pmen_0115 Pmen_0116     FALSE 0.418 89.000 0.130 NA   NA
 3613302 3613303 Pmen_0116 Pmen_0117     FALSE 0.154 66.000 0.000 1.000   NA
 3613303 3613304 Pmen_0117 Pmen_0118     FALSE 0.176 56.000 0.000 1.000 N NA
 3613304 3613305 Pmen_0118 Pmen_0119     TRUE 0.996 0.000 0.136 0.001 Y NA
 3613306 3613307 Pmen_0120 Pmen_0121     FALSE 0.179 105.000 0.012 NA   NA
 3613307 3613308 Pmen_0121 Pmen_0122     FALSE 0.125 80.000 0.000 NA   NA
 3613308 3613309 Pmen_0122 Pmen_0123     FALSE 0.010 601.000 0.000 NA N NA
 3613309 3613310 Pmen_0123 Pmen_0124     TRUE 0.656 64.000 0.286 NA N NA
 3613314 3613315 Pmen_0128 Pmen_0129 aspA   TRUE 0.664 129.000 0.353 1.000 N NA
 3613317 3613318 Pmen_0131 Pmen_0132     TRUE 0.704 20.000 0.019 1.000   NA
 3613318 3613319 Pmen_0132 Pmen_0133     TRUE 0.990 0.000 0.222 0.009   NA
 3613321 3613322 Pmen_0135 Pmen_0136     TRUE 0.607 162.000 0.095 1.000 Y NA
 3613322 3613323 Pmen_0136 Pmen_0137     TRUE 0.436 29.000 0.000 1.000   NA
 3613324 3613325 Pmen_0138 Pmen_0139     FALSE 0.118 72.000 0.000 NA N NA
 3613328 3613329 Pmen_0142 Pmen_0143     TRUE 0.999 5.000 0.741 0.004 Y NA
 3613329 3613330 Pmen_0143 Pmen_0144     TRUE 0.967 11.000 0.268 1.000 N NA
 3613330 3613331 Pmen_0144 Pmen_0145     TRUE 0.984 12.000 0.536 1.000 N NA
 3613333 3613334 Pmen_0147 Pmen_0148     TRUE 0.992 -25.000 0.722 NA   NA
 3613334 3613335 Pmen_0148 Pmen_0149     TRUE 0.826 37.000 0.255 NA   NA
 3613335 3613336 Pmen_0149 Pmen_0150     TRUE 0.982 19.000 0.321 1.000 Y NA
 3613336 3613337 Pmen_0150 Pmen_0151     FALSE 0.329 153.000 0.099 1.000   NA
 3613338 3613339 Pmen_0152 Pmen_0153     TRUE 0.921 16.000 0.204 NA   NA
 3613342 3613343 Pmen_0156 Pmen_0157     TRUE 0.799 49.000 0.000 0.013 Y NA
 3613343 3613344 Pmen_0157 Pmen_0158     FALSE 0.333 140.000 0.088 1.000 N NA
 3613344 3613345 Pmen_0158 Pmen_0159     TRUE 0.875 20.000 0.162 NA   NA
 3613346 3613347 Pmen_0160 Pmen_0161     TRUE 0.531 20.000 0.000 NA   NA
 3613350 3613351 Pmen_0164 Pmen_0165     TRUE 0.910 -3.000 0.025 NA N NA
 3613352 3613353 Pmen_0166 Pmen_0167     FALSE 0.114 114.000 0.000 NA   NA
 3613353 3613354 Pmen_0167 Pmen_0168     FALSE 0.341 35.000 0.000 NA   NA
 3613355 3613356 Pmen_0169 Pmen_0170     TRUE 0.993 0.000 0.208 1.000 Y NA
 3613356 3613357 Pmen_0170 Pmen_0171     TRUE 0.990 -3.000 0.416 1.000   NA
 3613357 3613358 Pmen_0171 Pmen_0172     TRUE 0.985 -6.000 0.353 1.000   NA
 3613358 3613359 Pmen_0172 Pmen_0173     FALSE 0.069 176.000 0.000 NA   NA
 3613359 3613360 Pmen_0173 Pmen_0174     TRUE 0.552 19.000 0.000 NA   NA
 3613361 3613362 Pmen_0175 Pmen_0176     TRUE 0.991 14.000 0.455 1.000 Y NA
 3613363 3613364 Pmen_0177 Pmen_0178     TRUE 0.500 66.000 0.167 NA   NA
 3613364 3613365 Pmen_0178 Pmen_0179     FALSE 0.010 904.000 0.000 NA   NA
 3613365 3613366 Pmen_0179 Pmen_0180     TRUE 0.538 166.000 0.211 0.092   NA
 3613366 3613367 Pmen_0180 Pmen_0181     TRUE 0.973 16.000 0.489 1.000   NA
 3613367 3613368 Pmen_0181 Pmen_0182     TRUE 0.962 67.000 0.511 0.001 Y NA
 3613368 3613369 Pmen_0182 Pmen_0183     TRUE 0.793 162.000 0.330 NA Y NA
 3613369 3613370 Pmen_0183 Pmen_0184     FALSE 0.198 136.000 0.027 NA N NA
 3613370 3613371 Pmen_0184 Pmen_0185     TRUE 0.679 148.000 0.412 1.000 N NA
 3613371 3613372 Pmen_0185 Pmen_0186     FALSE 0.019 356.000 0.000 1.000 N NA
 3613372 3613373 Pmen_0186 Pmen_0187     TRUE 0.999 0.000 0.865 0.005 Y NA
 3613373 3613374 Pmen_0187 Pmen_0188     TRUE 0.930 -16.000 0.081 1.000   NA
 3613374 3613375 Pmen_0188 Pmen_0189     TRUE 0.950 4.000 0.094 1.000   NA
 3613375 3613376 Pmen_0189 Pmen_0190     TRUE 0.902 28.000 0.296 1.000   NA
 3613376 3613377 Pmen_0190 Pmen_0191     TRUE 0.955 17.000 0.333 1.000   NA
 3613377 3613378 Pmen_0191 Pmen_0192     TRUE 0.992 2.000 0.500 1.000 N NA
 3613378 3613379 Pmen_0192 Pmen_0193     TRUE 0.999 -3.000 0.846 1.000 Y NA
 3613380 3613381 Pmen_0194 Pmen_0195     TRUE 0.997 -3.000 1.000 NA   NA
 3613381 3613382 Pmen_0195 Pmen_0196     FALSE 0.022 319.000 0.000 1.000 N NA
 3613382 3613383 Pmen_0196 Pmen_0197     FALSE 0.029 279.000 0.000 1.000 N NA
 3613383 3613384 Pmen_0197 Pmen_0198     TRUE 0.505 118.000 0.000 1.000 Y NA
 3613384 3613385 Pmen_0198 Pmen_0199     FALSE 0.253 228.000 0.000 1.000 Y NA
 3613385 3613386 Pmen_0199 Pmen_0200     FALSE 0.345 154.000 0.125 NA   NA
 3613386 3613387 Pmen_0200 Pmen_0201   glcF TRUE 0.596 37.000 0.057 NA   NA
 3613387 3613388 Pmen_0201 Pmen_0202 glcF glcE TRUE 0.991 4.000 0.074 0.066 Y NA
 3613388 3613389 Pmen_0202 Pmen_0203 glcE   TRUE 0.993 0.000 0.070 0.017 Y NA
 3613392 3613393 Pmen_0206 Pmen_0207   flgC TRUE 0.999 3.000 0.972 0.007 Y NA
 3613393 3613394 Pmen_0207 Pmen_0208 flgC flgD TRUE 0.999 0.000 0.914 NA Y NA
 3613394 3613395 Pmen_0208 Pmen_0209 flgD   TRUE 0.989 37.000 0.970 NA Y NA
 3613395 3613396 Pmen_0209 Pmen_0210     TRUE 0.999 10.000 1.000 0.007 Y NA
 3613396 3613397 Pmen_0210 Pmen_0211     TRUE 0.959 196.000 0.971 0.002 Y NA
 3613397 3613398 Pmen_0211 Pmen_0212   flgH TRUE 0.999 6.000 0.941 0.011 Y NA
 3613398 3613399 Pmen_0212 Pmen_0213 flgH flgI TRUE 0.999 10.000 0.912 0.014 Y NA
 3613399 3613400 Pmen_0213 Pmen_0214 flgI   TRUE 0.977 4.000 0.025 NA Y NA
 3613400 3613401 Pmen_0214 Pmen_0215     TRUE 0.977 4.000 0.025 NA Y NA
 3613401 3613402 Pmen_0215 Pmen_0216   flgL TRUE 0.994 24.000 0.576 0.002 Y NA
 3613402 3613403 Pmen_0216 Pmen_0217 flgL   TRUE 0.987 13.000 0.667 NA   NA
 3613404 3613405 Pmen_0218 Pmen_0219     FALSE 0.039 233.000 0.000 NA   NA
 3613405 3613406 Pmen_0219 Pmen_0220     FALSE 0.102 143.000 0.000 NA   NA
 3613406 3613407 Pmen_0220 Pmen_0221     TRUE 0.542 18.000 0.000 NA N NA
 3613407 3613408 Pmen_0221 Pmen_0222     FALSE 0.116 128.000 0.000 1.000 N NA
 3613408 3613409 Pmen_0222 Pmen_0223     FALSE 0.106 136.000 0.000 NA   NA
 3613409 3613410 Pmen_0223 Pmen_0224     TRUE 0.512 21.000 0.000 NA   NA
 3613411 3613412 Pmen_0225 Pmen_0226     FALSE 0.105 106.000 0.000 NA N NA
 3613412 3613413 Pmen_0226 Pmen_0227     FALSE 0.031 248.000 0.000 NA N NA
 3613415 3613416 Pmen_0229 Pmen_0230     FALSE 0.119 88.000 0.000 NA   NA
 3613418 3613419 Pmen_0231 Pmen_0232 gabD   TRUE 0.633 98.000 0.303 1.000 N NA
 3613419 3613420 Pmen_0232 Pmen_0233     FALSE 0.035 264.000 0.000 1.000   NA
 3613420 3613421 Pmen_0233 Pmen_0234     FALSE 0.134 93.000 0.000 1.000   NA
 3613421 3613422 Pmen_0234 Pmen_0235     TRUE 0.990 -3.000 0.400 1.000   NA
 3613424 3613425 Pmen_0237 Pmen_0238     FALSE 0.221 306.000 0.292 1.000 N NA
 3613425 3613426 Pmen_0238 Pmen_0239     FALSE 0.288 88.000 0.000 0.076 N NA
 3613432 3613433 Pmen_0245 Pmen_0246     TRUE 0.628 38.000 0.088 NA N NA
 3613433 3613434 Pmen_0246 Pmen_0247   dadX FALSE 0.283 144.000 0.070 NA N NA
 3613434 3613435 Pmen_0247 Pmen_0248 dadX   FALSE 0.278 104.000 0.046 1.000 N NA
 3613435 3613436 Pmen_0248 Pmen_0249     FALSE 0.297 123.000 0.057 1.000 N NA
 3613436 3613437 Pmen_0249 Pmen_0250     FALSE 0.220 413.000 0.123 1.000 Y NA
 3613438 3613439 Pmen_0251 Pmen_0252     FALSE 0.159 135.000 0.009 NA   NA
 3613439 3613440 Pmen_0252 Pmen_0253     FALSE 0.067 179.000 0.000 NA   NA
 3613444 3613445 Pmen_0257 Pmen_0258     TRUE 0.659 35.000 0.074 NA   NA
 3613446 3613447 Pmen_0259 Pmen_0260     FALSE 0.103 330.000 0.139 1.000 N NA
 3613447 3613448 Pmen_0260 Pmen_0261     FALSE 0.169 99.000 0.007 NA   NA
 3613448 3613449 Pmen_0261 Pmen_0262     FALSE 0.214 78.000 0.018 NA   NA
 3613450 3613451 Pmen_0263 Pmen_0264   xerC TRUE 0.989 -3.000 0.367 1.000   NA
 3613451 3613452 Pmen_0264 Pmen_0265 xerC   TRUE 0.986 15.000 0.714 NA   NA
 3613452 3613453 Pmen_0265 Pmen_0266   dapF TRUE 0.971 -3.000 0.175 NA   NA
 3613453 3613454 Pmen_0266 Pmen_0267 dapF   TRUE 0.990 11.000 0.104 0.002 Y NA
 3613455 3613456 Pmen_0268 Pmen_0269   cyaY FALSE 0.119 70.000 0.000 NA N NA
 3613456 3613457 Pmen_0269 Pmen_0270 cyaY   TRUE 0.879 -10.000 0.025 NA   NA
 3613457 3613458 Pmen_0270 Pmen_0271     FALSE 0.288 118.000 0.054 NA   NA
 3613458 3613459 Pmen_0271 Pmen_0272     FALSE 0.175 59.000 0.000 1.000   NA
 3613460 3613461 Pmen_0273 Pmen_0274 cyaA   TRUE 0.457 121.000 0.164 1.000   NA
 3613461 3613462 Pmen_0274 Pmen_0275     TRUE 0.525 75.000 0.200 NA   NA
 3613462 3613463 Pmen_0275 Pmen_0276     TRUE 0.754 -19.000 0.000 NA   NA
 3613463 3613464 Pmen_0276 Pmen_0277     FALSE 0.183 53.000 0.000 NA   NA
 3613465 3613466 Pmen_0278 Pmen_0279     TRUE 0.999 -3.000 0.775 0.032 Y NA
 3613466 3613467 Pmen_0279 Pmen_0280   hemC FALSE 0.254 85.000 0.032 1.000 N NA
 3613467 3613468 Pmen_0280 Pmen_0281 hemC   TRUE 0.996 -3.000 0.205 0.002 Y NA
 3613468 3613469 Pmen_0281 Pmen_0282     TRUE 0.995 13.000 0.600 1.000 Y NA
 3613469 3613470 Pmen_0282 Pmen_0283     TRUE 0.999 -3.000 0.765 1.000 Y NA
 3613470 3613471 Pmen_0283 Pmen_0284     FALSE 0.229 153.000 0.042 1.000 N NA
 3613471 3613472 Pmen_0284 Pmen_0285     FALSE 0.111 310.000 0.133 1.000 N NA
 3613476 3613477 Pmen_0289 Pmen_0290     TRUE 0.961 0.000 0.108 NA   NA
 3613477 3613478 Pmen_0290 Pmen_0291     TRUE 0.663 35.000 0.075 NA   NA
 3613478 3613479 Pmen_0291 Pmen_0292     FALSE 0.208 129.000 0.024 1.000 N NA
 3613479 3613480 Pmen_0292 Pmen_0293     FALSE 0.112 123.000 0.000 NA   NA
 3613480 3613481 Pmen_0293 Pmen_0294     FALSE 0.147 62.000 0.000 NA   NA
 3613482 3613483 Pmen_0295 Pmen_0296     FALSE 0.299 231.000 0.021 NA Y NA
 3613486 3613487 Pmen_0299 Pmen_0300     TRUE 0.743 20.000 0.033 1.000 N NA
 3613488 3613489 Pmen_0301 Pmen_0302     TRUE 0.518 87.000 0.000 1.000 Y NA
 3613489 3613490 Pmen_0302 Pmen_0303     TRUE 0.842 -3.000 0.000 1.000 N NA
 3613490 3613491 Pmen_0303 Pmen_0304     TRUE 0.994 -13.000 0.340 1.000 Y NA
 3613491 3613492 Pmen_0304 Pmen_0305     TRUE 0.999 0.000 0.513 0.014 Y NA
 3613492 3613493 Pmen_0305 Pmen_0306     TRUE 0.977 20.000 0.179 0.069 Y NA
 3613494 3613495 Pmen_0307 Pmen_0308     FALSE 0.182 110.000 0.008 1.000   NA
 3613495 3613496 Pmen_0308 Pmen_0309   rho FALSE 0.152 233.000 0.087 1.000   NA
 3613496 3613497 Pmen_0309 Pmen_0310 rho   FALSE 0.066 250.000 0.025 NA N NA
 3613497 3613498 Pmen_0310 Pmen_0311     TRUE 0.932 0.000 0.042 NA N NA
 3613498 3613499 Pmen_0311 Pmen_0312     FALSE 0.025 290.000 0.000 NA   NA
 3613502 3613503 Pmen_0315 Pmen_0316     TRUE 0.987 0.000 0.161 0.005   NA
 3613503 3613504 Pmen_0316 Pmen_0317     TRUE 0.852 -3.000 0.000 1.000   NA
 3613504 3613505 Pmen_0317 Pmen_0318     FALSE 0.124 94.000 0.000 1.000 N NA
 3613505 3613506 Pmen_0318 Pmen_0319     FALSE 0.187 52.000 0.000 NA   NA
 3613508 3613509 Pmen_0321 Pmen_0322     FALSE 0.055 301.000 0.034 NA   NA
 3613509 3613510 Pmen_0322 Pmen_0323     TRUE 0.940 -3.000 0.053 NA   NA
 3613511 3613512 Pmen_0324 Pmen_0325     TRUE 0.946 19.000 0.329 NA   NA
 3613512 3613513 Pmen_0325 Pmen_0326     TRUE 0.986 5.000 0.396 1.000 N NA
 3613513 3613514 Pmen_0326 Pmen_0327     TRUE 0.827 103.000 0.083 0.001 Y NA
 3613514 3613515 Pmen_0327 Pmen_0328     FALSE 0.275 40.000 0.000 NA   NA
 3613515 3613516 Pmen_0328 Pmen_0329     FALSE 0.114 108.000 0.000 NA   NA
 3613516 3613517 Pmen_0329 Pmen_0330     FALSE 0.089 156.000 0.000 NA   NA
 3613517 3613518 Pmen_0330 Pmen_0331   gcvT FALSE 0.089 312.000 0.017 0.069 N NA
 3613518 3613519 Pmen_0331 Pmen_0332 gcvT   TRUE 0.918 95.000 0.317 0.004 Y NA
 3613519 3613520 Pmen_0332 Pmen_0333     FALSE 0.105 147.000 0.000 1.000 N NA
 3613520 3613521 Pmen_0333 Pmen_0334     TRUE 0.952 -3.000 0.079 NA   NA
 3613521 3613522 Pmen_0334 Pmen_0335     TRUE 0.971 3.000 0.200 NA   NA
 3613522 3613523 Pmen_0335 Pmen_0336     TRUE 0.616 15.000 0.000 NA   NA
 3613524 3613525 Pmen_0337 Pmen_0338     FALSE 0.391 70.000 0.084 1.000   NA
 3613525 3613526 Pmen_0338 Pmen_0339     FALSE 0.075 264.000 0.032 1.000   NA
 3613526 3613527 Pmen_0339 Pmen_0340     FALSE 0.411 72.000 0.105 1.000 N NA
 3613527 3613528 Pmen_0340 Pmen_0341     FALSE 0.367 177.000 0.000 1.000 Y NA
 3613529 3613530 Pmen_0342 Pmen_0343     TRUE 0.571 84.000 0.239 1.000 N NA
 3613530 3613531 Pmen_0343 Pmen_0344     FALSE 0.114 132.000 0.000 1.000 N NA
 3613531 3613532 Pmen_0344 Pmen_0345     TRUE 0.694 68.000 0.000 0.027 Y NA
 3613532 3613533 Pmen_0345 Pmen_0346     TRUE 0.694 68.000 0.000 0.027 Y NA
 3613533 3613534 Pmen_0346 Pmen_0347     TRUE 0.899 54.000 0.300 1.000 Y NA
 3613534 3613535 Pmen_0347 Pmen_0348     TRUE 0.987 -3.000 0.071 1.000 Y NA
 3613535 3613536 Pmen_0348 Pmen_0349     TRUE 0.998 -3.000 0.528 0.069 Y NA
 3613538 3613539 Pmen_0351 Pmen_0352     TRUE 0.987 39.000 0.937 NA Y NA
 3613539 3613540 Pmen_0352 Pmen_0353     FALSE 0.315 68.000 0.048 1.000 N NA
 3613540 3613541 Pmen_0353 Pmen_0354     TRUE 0.826 64.000 0.051 0.003 Y NA
 3613542 3613543 Pmen_0355 Pmen_0356     FALSE 0.159 168.000 0.030 NA   NA
 3613543 3613544 Pmen_0356 Pmen_0357     FALSE 0.242 104.000 0.036 NA N NA
 3613544 3613545 Pmen_0357 Pmen_0358     TRUE 0.925 -3.000 0.036 NA N NA
 3613546 3613547 Pmen_0359 Pmen_0360 ompR   TRUE 0.932 77.000 0.584 1.000 Y NA
 3613547 3613548 Pmen_0360 Pmen_0361     TRUE 0.724 103.000 0.022 0.018 Y NA
 3613549 3613550 Pmen_0362 Pmen_0363     TRUE 0.976 -3.000 0.214 NA N NA
 3613550 3613551 Pmen_0363 Pmen_0364     TRUE 0.959 -3.000 0.102 1.000 N NA
 3613554 3613555 Pmen_0367 Pmen_0368 hslO   FALSE 0.222 158.000 0.048 1.000 N NA
 3613555 3613556 Pmen_0368 Pmen_0369     FALSE 0.129 159.000 0.004 1.000   NA
 3613557 3613558 Pmen_0370 Pmen_0371     TRUE 0.975 -3.000 0.201 NA   NA
 3613558 3613559 Pmen_0371 Pmen_0372     TRUE 0.998 1.000 0.650 NA Y NA
 3613559 3613560 Pmen_0372 Pmen_0373     TRUE 0.997 -3.000 0.491 NA Y NA
 3613561 3613562 Pmen_0374 Pmen_0375     FALSE 0.116 100.000 0.000 NA   NA
 3613562 3613563 Pmen_0375 Pmen_0376     FALSE 0.037 240.000 0.000 NA   NA
 3613563 3613564 Pmen_0376 Pmen_0377     TRUE 0.997 2.000 0.500 NA Y NA
 3613566 3613567 Pmen_0379 Pmen_0380     TRUE 0.997 -3.000 0.500 1.000 Y NA
 3613567 3613568 Pmen_0380 Pmen_0381     FALSE 0.343 139.000 0.094 1.000 N NA
 3613568 3613569 Pmen_0381 Pmen_0382     TRUE 0.496 98.000 0.185 1.000   NA
 3613569 3613570 Pmen_0382 Pmen_0383     FALSE 0.143 64.000 0.000 NA   NA
 3613570 3613571 Pmen_0383 Pmen_0384     TRUE 0.993 -3.000 0.556 NA   NA
 3613572 3613573 Pmen_0385 Pmen_0386     FALSE 0.122 132.000 0.000 1.000   NA
 3613574 3613575 Pmen_0387 Pmen_0388     TRUE 0.999 -3.000 0.870 0.010 Y NA
 3613575 3613576 Pmen_0388 Pmen_0389     TRUE 0.972 16.000 0.466 1.000   NA
 3613576 3613577 Pmen_0389 Pmen_0390     TRUE 0.651 149.000 0.175 0.001   NA
 3613577 3613578 Pmen_0390 Pmen_0391     FALSE 0.219 201.000 0.000 0.001   NA
 3613580 3613581 Pmen_0393 Pmen_0394 nudE   TRUE 0.989 -3.000 0.373 1.000   NA
 3613582 3613583 Pmen_0395 Pmen_0396   pyrC FALSE 0.033 257.000 0.000 1.000 N NA
 3613583 3613584 Pmen_0396 Pmen_0397 pyrC pyrB TRUE 0.997 0.000 0.452 1.000 Y NA
 3613584 3613585 Pmen_0397 Pmen_0398 pyrB   TRUE 0.987 12.000 0.247 1.000 Y NA
 3613585 3613586 Pmen_0398 Pmen_0399     FALSE 0.349 147.000 0.109 1.000 N NA
 3613586 3613587 Pmen_0399 Pmen_0400     TRUE 0.982 0.000 0.263 NA N NA
 3613587 3613588 Pmen_0400 Pmen_0401     FALSE 0.376 59.000 0.064 NA N NA
 3613588 3613589 Pmen_0401 Pmen_0402     FALSE 0.367 89.000 0.089 1.000 N NA
 3613590 3613591 Pmen_0403 Pmen_0404     TRUE 0.950 47.000 0.296 0.024 Y NA
 3613591 3613592 Pmen_0404 Pmen_0405     TRUE 0.912 46.000 0.266 1.000 Y NA
 3613592 3613593 Pmen_0405 Pmen_0406     TRUE 0.973 85.000 0.795 0.014 Y NA
 3613593 3613594 Pmen_0406 Pmen_0407     TRUE 0.850 61.000 0.241 1.000 Y NA
 3613594 3613595 Pmen_0407 Pmen_0408     TRUE 0.987 11.000 0.217 1.000 Y NA
 3613595 3613596 Pmen_0408 Pmen_0409     TRUE 0.996 -3.000 0.217 0.018 Y NA
 3613596 3613597 Pmen_0409 Pmen_0410     TRUE 0.992 11.000 0.517 0.014   NA
 3613598 3613599 Pmen_0411 Pmen_0412     FALSE 0.049 208.000 0.000 NA   NA
 3613599 3613600 Pmen_0412 Pmen_0413     FALSE 0.251 130.000 0.041 NA   NA
 3613600 3613601 Pmen_0413 Pmen_0414     FALSE 0.084 164.000 0.000 1.000 N NA
 3613601 3613602 Pmen_0414 Pmen_0415     TRUE 0.539 71.000 0.000 1.000 Y NA
 3613602 3613603 Pmen_0415 Pmen_0416     TRUE 0.898 42.000 0.500 1.000 N NA
 3613604 3613605 Pmen_0417 Pmen_0418     FALSE 0.124 98.000 0.000 1.000 N NA
 3613605 3613606 Pmen_0418 Pmen_0419     TRUE 0.881 59.000 0.676 NA   NA
 3613607 3613608 Pmen_0420 Pmen_0421     FALSE 0.063 188.000 0.000 1.000 N NA
 3613608 3613609 Pmen_0421 Pmen_0422     FALSE 0.183 53.000 0.000 NA   NA
 3613609 3613610 Pmen_0422 Pmen_0423     FALSE 0.117 99.000 0.000 NA   NA
 3613610 3613611 Pmen_0423 Pmen_0424     TRUE 0.961 -30.000 0.214 NA   NA
 3613612 3613613 Pmen_0425 Pmen_0426     FALSE 0.114 370.000 0.000 NA Y NA
 3613613 3613614 Pmen_0426 Pmen_0427     FALSE 0.124 352.000 0.000 NA Y NA
 3613614 3613615 Pmen_0427 Pmen_0428     FALSE 0.090 155.000 0.000 NA   NA
 3613615 3613616 Pmen_0428 Pmen_0429     FALSE 0.031 260.000 0.000 NA   NA
 3613616 3613617 Pmen_0429 Pmen_0430     FALSE 0.219 50.000 0.000 1.000   NA
 3613618 3613619 Pmen_0431 Pmen_0432     TRUE 0.531 20.000 0.000 NA   NA
 3613621 3613622 Pmen_0434 Pmen_0435     TRUE 0.531 20.000 0.000 NA   NA
 3613622 3613623 Pmen_0435 Pmen_0436     FALSE 0.033 254.000 0.000 NA   NA
 3613623 3613624 Pmen_0436 Pmen_0437     FALSE 0.121 102.000 0.000 1.000 N NA
 3613624 3613625 Pmen_0437 Pmen_0438     FALSE 0.127 74.000 0.000 NA   NA
 3613625 3613626 Pmen_0438 Pmen_0439     TRUE 0.745 -1850.000 0.000 NA   NA
 3613626 3613627 Pmen_0439 Pmen_0440     FALSE 0.011 1274.000 0.000 1.000 N NA
 3613627 3613628 Pmen_0440 Pmen_0441     TRUE 0.785 47.000 0.045 1.000 Y NA
 3613628 3613629 Pmen_0441 Pmen_0442     TRUE 0.887 36.000 0.000 0.010 Y NA
 3613629 3613630 Pmen_0442 Pmen_0443     FALSE 0.051 217.000 0.000 1.000   NA
 3613632 3613633 Pmen_0445 Pmen_0446     TRUE 0.790 -7.000 0.000 NA   NA
 3613633 3613634 Pmen_0446 Pmen_0447     FALSE 0.114 117.000 0.000 NA   NA
 3613634 3613635 Pmen_0447 Pmen_0448     FALSE 0.217 47.000 0.000 NA   NA
 3613635 3613636 Pmen_0448 Pmen_0449     FALSE 0.317 91.000 0.061 1.000 N NA
 3613637 3613638 Pmen_0450 Pmen_0451     FALSE 0.274 157.000 0.080 NA   NA
 3613639 3613640 Pmen_0452 Pmen_0453   ligB FALSE 0.351 84.000 0.079 NA   NA
 3613640 3613641 Pmen_0453 Pmen_0454 ligB   FALSE 0.149 141.000 0.004 1.000 N NA
 3613641 3613642 Pmen_0454 Pmen_0455     TRUE 0.930 -3.000 0.036 1.000 N NA
 3613642 3613643 Pmen_0455 Pmen_0456     FALSE 0.301 73.000 0.000 0.081 N NA
 3613644 3613645 Pmen_0457 Pmen_0458     FALSE 0.120 113.000 0.000 1.000 N NA
 3613645 3613646 Pmen_0458 Pmen_0459     TRUE 0.826 126.000 0.285 1.000 Y NA
 3613646 3613647 Pmen_0459 Pmen_0460   pgk TRUE 0.992 5.000 0.070 0.004 Y NA
 3613647 3613648 Pmen_0460 Pmen_0461 pgk   FALSE 0.018 354.000 0.000 NA   NA
 3613648 3613649 Pmen_0461 Pmen_0462     FALSE 0.350 98.000 0.084 NA   NA
 3613651 3613652 Pmen_0464 Pmen_0465     TRUE 0.958 14.000 0.308 NA   NA
 3613652 3613653 Pmen_0465 Pmen_0466     FALSE 0.267 56.000 0.016 NA   NA
 3613654 3613655 Pmen_0467 Pmen_0468     FALSE 0.145 63.000 0.000 NA   NA
 3613655 3613656 Pmen_0468 Pmen_0469     FALSE 0.166 62.000 0.000 1.000   NA
 3613656 3613657 Pmen_0469 Pmen_0470     FALSE 0.134 67.000 0.000 NA   NA
 3613658 3613659 Pmen_0471 Pmen_0472     TRUE 0.996 0.000 0.330 NA Y NA
 3613659 3613660 Pmen_0472 Pmen_0473     FALSE 0.152 108.000 0.006 NA N NA
 3613660 3613661 Pmen_0473 Pmen_0474     FALSE 0.106 146.000 0.000 1.000 N NA
 3613662 3613663 Pmen_0475 Pmen_0476     FALSE 0.079 176.000 0.000 1.000   NA
 3613665 3613666 Pmen_0478 Pmen_0479     FALSE 0.378 41.000 0.010 1.000 N NA
 3613666 3613667 Pmen_0479 Pmen_0480     FALSE 0.373 50.000 0.029 1.000   NA
 3613667 3613668 Pmen_0480 Pmen_0481     FALSE 0.193 119.000 0.012 1.000   NA
 3613668 3613669 Pmen_0481 Pmen_0482     TRUE 0.839 80.000 0.634 1.000 N NA
 3613669 3613670 Pmen_0482 Pmen_0483     FALSE 0.332 312.000 0.459 1.000 N NA
 3613670 3613671 Pmen_0483 Pmen_0484     FALSE 0.065 185.000 0.000 1.000 N NA
 3613671 3613672 Pmen_0484 Pmen_0485     TRUE 0.464 197.000 0.000 0.016 Y NA
 3613672 3613673 Pmen_0485 Pmen_0486     TRUE 0.952 28.000 0.095 0.068 Y NA
 3613673 3613674 Pmen_0486 Pmen_0487     TRUE 0.993 -7.000 0.288 1.000 Y NA
 3613674 3613675 Pmen_0487 Pmen_0488     FALSE 0.076 965.000 0.000 1.000 Y NA
 3613676 3613677 Pmen_0489 Pmen_0490     FALSE 0.021 313.000 0.000 NA   NA
 3613678 3613679 Pmen_0491 Pmen_0492     TRUE 0.690 26.000 0.045 NA   NA
 3613679 3613680 Pmen_0492 Pmen_0493     TRUE 0.976 63.000 0.776 0.022 Y NA
 3613680 3613681 Pmen_0493 Pmen_0494     TRUE 0.988 38.000 0.667 0.022 Y NA
 3613681 3613682 Pmen_0494 Pmen_0495     TRUE 0.937 153.000 0.574 0.064 Y NA
 3613682 3613683 Pmen_0495 Pmen_0496     TRUE 0.902 99.000 0.912 1.000   NA
 3613683 3613684 Pmen_0496 Pmen_0497     TRUE 0.886 131.000 0.868 1.000   NA
 3613684 3613685 Pmen_0497 Pmen_0498     FALSE 0.063 188.000 0.000 1.000 N NA
 3613686 3613687 Pmen_0499 Pmen_0500     FALSE 0.245 102.000 0.029 1.000   NA
 3613687 3613688 Pmen_0500 Pmen_0501     TRUE 0.809 134.000 0.608 1.000   NA
 3613688 3613689 Pmen_0501 Pmen_0502     TRUE 0.715 109.000 0.419 NA   NA
 3613689 3613690 Pmen_0502 Pmen_0503     FALSE 0.365 90.000 0.091 NA   NA
 3613692 3613693 Pmen_0505 Pmen_0506     TRUE 0.983 -3.000 0.283 NA   NA
 3613693 3613694 Pmen_0506 Pmen_0507     FALSE 0.052 198.000 0.000 NA   NA
 3613694 3613695 Pmen_0507 Pmen_0508     FALSE 0.274 63.000 0.026 1.000 N NA
 3613695 3613696 Pmen_0508 Pmen_0509     TRUE 0.952 4.000 0.103 1.000   NA
 3613696 3613697 Pmen_0509 Pmen_0510     TRUE 0.436 73.000 0.119 1.000   NA
 3613697 3613698 Pmen_0510 Pmen_0511     TRUE 0.954 13.000 0.250 1.000   NA
 3613700 3613701 Pmen_0513 Pmen_0514     TRUE 0.966 -3.000 0.026 0.044   NA
 3613702 3613703 Pmen_0515 Pmen_0516     TRUE 0.950 -3.000 0.076 NA   NA
 3613703 3613704 Pmen_0516 Pmen_0517     TRUE 0.995 -3.000 0.314 NA Y NA
 3613704 3613705 Pmen_0517 Pmen_0518     TRUE 0.988 4.000 0.015 0.009 Y NA
 3613705 3613706 Pmen_0518 Pmen_0519   hisE TRUE 0.595 23.000 0.007 1.000 N NA
 3613706 3613707 Pmen_0519 Pmen_0520 hisE hisI TRUE 0.994 -7.000 0.152 0.004 Y NA
 3613707 3613708 Pmen_0520 Pmen_0521 hisI   FALSE 0.234 71.000 0.018 1.000   NA
 3613708 3613709 Pmen_0521 Pmen_0522     TRUE 0.991 -3.000 0.432 1.000   NA
 3613709 3613710 Pmen_0522 Pmen_0523   ubiE TRUE 0.969 0.000 0.145 1.000   NA
 3613711 3613712 Pmen_0524 Pmen_0525     FALSE 0.329 172.000 0.167 NA   NA
 3613712 3613713 Pmen_0525 Pmen_0526     TRUE 0.990 11.000 0.667 NA   NA
 3613714 3613715 Pmen_0527 Pmen_0528     TRUE 0.436 71.000 0.123 1.000 N NA
 3613715 3613716 Pmen_0528 Pmen_0529     FALSE 0.207 209.000 0.119 1.000 N NA
 3613716 3613717 Pmen_0529 Pmen_0530     FALSE 0.430 154.000 0.190 1.000 N NA
 3613717 3613718 Pmen_0530 Pmen_0531     FALSE 0.015 390.000 0.000 NA   NA
 3613718 3613719 Pmen_0531 Pmen_0532   hslU FALSE 0.338 82.000 0.070 NA   NA
 3613719 3613720 Pmen_0532 Pmen_0533 hslU   TRUE 0.982 40.000 0.752 1.000 Y NA
 3613720 3613721 Pmen_0533 Pmen_0534     FALSE 0.394 97.000 0.122 NA N NA
 3613721 3613722 Pmen_0534 Pmen_0535   argS TRUE 0.935 1.000 0.052 NA N NA
 3613722 3613723 Pmen_0535 Pmen_0536 argS   FALSE 0.172 172.000 0.036 1.000 N NA
 3613724 3613725 Pmen_0537 Pmen_0538     TRUE 0.525 27.000 0.004 1.000 N NA
 3613725 3613726 Pmen_0538 Pmen_0539     TRUE 0.852 -3.000 0.000 1.000   NA
 3613726 3613727 Pmen_0539 Pmen_0540     FALSE 0.291 105.000 0.048 1.000   NA
 3613729 3613730 Pmen_0542 Pmen_0543     TRUE 0.998 0.000 0.616 NA Y NA
 3613730 3613731 Pmen_0543 Pmen_0544     TRUE 0.999 -3.000 0.770 NA Y NA
 3613731 3613732 Pmen_0544 Pmen_0545     TRUE 0.998 -3.000 0.680 NA Y NA
 3613732 3613733 Pmen_0545 Pmen_0546     TRUE 0.958 56.000 0.668 NA Y NA
 3613733 3613734 Pmen_0546 Pmen_0547   aroK TRUE 0.891 33.000 0.319 1.000 N NA
 3613734 3613735 Pmen_0547 Pmen_0548 aroK aroB TRUE 0.675 176.000 0.208 1.000 Y NA
 3613735 3613736 Pmen_0548 Pmen_0549 aroB   TRUE 0.847 11.000 0.020 1.000   NA
 3613736 3613737 Pmen_0549 Pmen_0550   gltB FALSE 0.101 238.000 0.037 1.000   NA
 3613737 3613738 Pmen_0550 Pmen_0551 gltB gltD TRUE 0.969 35.000 0.214 0.001 Y NA
 3613738 3613739 Pmen_0551 Pmen_0552 gltD hemE FALSE 0.217 119.000 0.024 1.000 N NA
 3613739 3613740 Pmen_0552 Pmen_0553 hemE   FALSE 0.114 131.000 0.000 1.000 N NA
 3613741 3613742 Pmen_0554 Pmen_0555     TRUE 0.435 124.000 0.167 NA N NA
 3613742 3613743 Pmen_0555 Pmen_0556     FALSE 0.040 222.000 0.000 NA N NA
 3613743 3613744 Pmen_0556 Pmen_0557     FALSE 0.164 59.000 0.000 1.000 N NA
 3613744 3613745 Pmen_0557 Pmen_0558     FALSE 0.024 291.000 0.000 NA   NA
 3613745 3613746 Pmen_0558 Pmen_0559     TRUE 0.833 12.000 0.028 NA   NA
 3613746 3613747 Pmen_0559 Pmen_0560     TRUE 0.687 102.000 0.379 NA N NA
 3613747 3613748 Pmen_0560 Pmen_0561     FALSE 0.207 163.000 0.046 1.000 N NA
 3613748 3613749 Pmen_0561 Pmen_0562     FALSE 0.386 57.000 0.000 0.067   NA
 3613750 3613751 Pmen_0563 Pmen_0564     TRUE 0.991 -7.000 0.103 0.051 Y NA
 3613751 3613752 Pmen_0564 Pmen_0565     TRUE 0.790 -7.000 0.000 NA   NA
 3613752 3613753 Pmen_0565 Pmen_0566     TRUE 0.986 -3.000 0.317 NA   NA
 3613753 3613754 Pmen_0566 Pmen_0567     TRUE 0.881 9.000 0.025 1.000   NA
 3613754 3613755 Pmen_0567 Pmen_0568     TRUE 0.995 1.000 0.681 NA   NA
 3613755 3613756 Pmen_0568 Pmen_0569     FALSE 0.115 103.000 0.000 NA   NA
 3613757 3613758 Pmen_0570 Pmen_0571     TRUE 0.912 84.000 1.000 NA   NA
 3613758 3613759 Pmen_0571 Pmen_0572     FALSE 0.180 74.000 0.006 NA   NA
 3613759 3613760 Pmen_0572 Pmen_0573     FALSE 0.363 52.000 0.032 1.000 N NA
 3613762 3613763 Pmen_0575 Pmen_0576 aceF aceE TRUE 0.981 12.000 0.167 1.000 Y NA
 3613764 3613765 Pmen_0577 Pmen_0578     FALSE 0.400 64.000 0.078 1.000 N NA
 3613765 3613766 Pmen_0578 Pmen_0579     FALSE 0.314 61.000 0.034 1.000 N NA
 3613766 3613767 Pmen_0579 Pmen_0580     TRUE 0.996 2.000 0.205 0.001 Y NA
 3613767 3613768 Pmen_0580 Pmen_0581     TRUE 0.988 10.000 0.217 1.000 Y NA
 3613768 3613769 Pmen_0581 Pmen_0582     TRUE 0.973 6.000 0.241 1.000   NA
 3613769 3613770 Pmen_0582 Pmen_0583     TRUE 0.986 0.000 0.133 0.002   NA
 3613770 3613771 Pmen_0583 Pmen_0584     TRUE 0.986 -3.000 0.133 0.002   NA
 3613771 3613772 Pmen_0584 Pmen_0585     TRUE 0.984 0.000 0.095 0.002   NA
 3613772 3613773 Pmen_0585 Pmen_0586     TRUE 0.881 13.000 0.067 1.000   NA
 3613773 3613774 Pmen_0586 Pmen_0587     TRUE 0.991 -13.000 0.409 0.016 N NA
 3613774 3613775 Pmen_0587 Pmen_0588     TRUE 0.704 37.000 0.125 NA   NA
 3613775 3613776 Pmen_0588 Pmen_0589     TRUE 0.959 3.000 0.125 NA   NA
 3613776 3613777 Pmen_0589 Pmen_0590     TRUE 0.946 -3.000 0.068 NA   NA
 3613777 3613778 Pmen_0590 Pmen_0591     TRUE 0.948 3.000 0.085 NA   NA
 3613780 3613781 Pmen_0594 Pmen_0595     TRUE 0.906 0.000 0.017 NA   NA
 3613781 3613782 Pmen_0595 Pmen_0596     TRUE 0.964 5.000 0.188 NA   NA
 3613782 3613783 Pmen_0596 Pmen_0597     FALSE 0.147 62.000 0.000 NA   NA
 3613783 3613784 Pmen_0597 Pmen_0598     FALSE 0.141 151.000 0.006 1.000 N NA
 3613784 3613785 Pmen_0598 Pmen_0599     TRUE 0.997 14.000 0.604 0.007 Y NA
 3613786 3613787 Pmen_0600 Pmen_0601     FALSE 0.116 172.000 0.012 NA   NA
 3613787 3613788 Pmen_0601 Pmen_0602     TRUE 0.869 8.000 0.016 1.000   NA
 3613788 3613789 Pmen_0602 Pmen_0603     TRUE 0.954 -3.000 0.086 NA   NA
 3613789 3613790 Pmen_0603 Pmen_0604     TRUE 0.908 0.000 0.019 NA   NA
 3613790 3613791 Pmen_0604 Pmen_0605     TRUE 0.927 16.000 0.217 NA   NA
 3613791 3613792 Pmen_0605 Pmen_0606     TRUE 0.718 113.000 0.427 NA   NA
 3613792 3613793 Pmen_0606 Pmen_0607     TRUE 0.689 147.000 0.433 NA   NA
 3613793 3613794 Pmen_0607 Pmen_0608     TRUE 0.990 -3.000 0.443 NA   NA
 3613794 3613795 Pmen_0608 Pmen_0609     FALSE 0.202 104.000 0.015 1.000   NA
 3613797 3613798 Pmen_0611 Pmen_0612     FALSE 0.425 44.000 0.028 1.000 N NA
 3613799 3613800 Pmen_0613 Pmen_0614     TRUE 0.754 64.000 0.400 1.000 N NA
 3613800 3613801 Pmen_0614 Pmen_0615     TRUE 0.998 -3.000 0.441 0.063 Y NA
 3613801 3613802 Pmen_0615 Pmen_0616     TRUE 0.627 142.000 0.324 1.000   NA
 3613805 3613806 Pmen_0619 Pmen_0620     TRUE 0.746 65.000 0.400 NA   NA
 3613806 3613807 Pmen_0620 Pmen_0621   psd FALSE 0.143 167.000 0.023 NA   NA
 3613807 3613808 Pmen_0621 Pmen_0622 psd   TRUE 0.509 57.000 0.125 1.000 N NA
 3613808 3613809 Pmen_0622 Pmen_0623     TRUE 0.479 67.000 0.156 NA   NA
 3613810 3613811 Pmen_0624 Pmen_0625   motB TRUE 0.994 17.000 0.722 1.000 Y NA
 3613813 3613814 Pmen_0627 Pmen_0628     FALSE 0.163 57.000 0.000 NA   NA
 3613816 3613817 Pmen_0630 Pmen_0631     TRUE 0.943 -12.000 0.118 NA   NA
 3613817 3613818 Pmen_0631 Pmen_0632     TRUE 0.693 23.000 0.033 NA   NA
 3613818 3613819 Pmen_0632 Pmen_0633   mutL TRUE 0.884 9.000 0.030 1.000 N NA
 3613819 3613820 Pmen_0633 Pmen_0634 mutL miaA TRUE 0.974 0.000 0.188 1.000 N NA
 3613820 3613821 Pmen_0634 Pmen_0635 miaA hfq TRUE 0.785 102.000 0.531 1.000   NA
 3613821 3613822 Pmen_0635 Pmen_0636 hfq   TRUE 0.920 13.000 0.141 1.000   NA
 3613822 3613823 Pmen_0636 Pmen_0637     TRUE 0.623 98.000 0.184 0.074   NA
 3613823 3613824 Pmen_0637 Pmen_0638     TRUE 0.999 0.000 0.947 0.008 Y NA
 3613824 3613825 Pmen_0638 Pmen_0639     TRUE 0.642 141.000 0.348 NA   NA
 3613825 3613826 Pmen_0639 Pmen_0640   hisZ TRUE 0.675 38.000 0.117 NA   NA
 3613826 3613827 Pmen_0640 Pmen_0641 hisZ   TRUE 0.548 57.000 0.161 1.000 N NA
 3613827 3613828 Pmen_0641 Pmen_0642     FALSE 0.075 209.000 0.007 1.000 N NA
 3613829 3613830 Pmen_R0002 Pmen_R0003     FALSE 0.122 83.000 0.000 NA   NA
 3613831 3613832 Pmen_0643 Pmen_0644     TRUE 0.984 -3.000 0.147 0.014 N NA
 3613832 3613833 Pmen_0644 Pmen_0645   rpsF TRUE 0.436 176.000 0.017 1.000 Y NA
 3613833 3613834 Pmen_0645 Pmen_0646 rpsF rpsR TRUE 0.981 29.000 0.319 0.012 Y NA
 3613834 3613835 Pmen_0646 Pmen_0647 rpsR   TRUE 0.532 37.000 0.034 NA   NA
 3613835 3613836 Pmen_0647 Pmen_0648   rplI TRUE 0.710 22.000 0.034 NA   NA
 3613836 3613837 Pmen_0648 Pmen_0649 rplI   FALSE 0.332 120.000 0.074 1.000 N NA
 3613837 3613838 Pmen_0649 Pmen_0650     FALSE 0.227 78.000 0.020 1.000 N NA
 3613840 3613841 Pmen_0652 Pmen_0653     FALSE 0.114 118.000 0.000 NA   NA
 3613841 3613842 Pmen_0653 Pmen_0654     TRUE 0.990 -3.000 0.433 NA   NA
 3613842 3613843 Pmen_0654 Pmen_0655     FALSE 0.059 188.000 0.000 NA   NA
 3613843 3613844 Pmen_0655 Pmen_0656     TRUE 0.834 112.000 0.667 NA   NA
 3613844 3613845 Pmen_0656 Pmen_0657     TRUE 0.996 -3.000 0.734 NA   NA
 3613846 3613847 Pmen_0658 Pmen_0659     FALSE 0.015 390.000 0.000 NA   NA
 3613847 3613848 Pmen_0659 Pmen_0660     FALSE 0.137 66.000 0.000 NA   NA
 3613848 3613849 Pmen_0660 Pmen_0661     FALSE 0.039 237.000 0.000 NA   NA
 3613849 3613850 Pmen_0661 Pmen_0662     FALSE 0.013 522.000 0.000 1.000 N NA
 3613850 3613851 Pmen_0662 Pmen_0663     FALSE 0.094 143.000 0.000 NA N NA
 3613851 3613852 Pmen_0663 Pmen_0664     TRUE 0.935 22.000 0.068 NA Y NA
 3613852 3613853 Pmen_0664 Pmen_0665     TRUE 0.996 17.000 0.550 0.002 Y NA
 3613853 3613854 Pmen_0665 Pmen_0666   ureE TRUE 0.987 38.000 0.560 0.002 Y NA
 3613854 3613855 Pmen_0666 Pmen_0667 ureE   FALSE 0.135 164.000 0.010 1.000   NA
 3613856 3613857 Pmen_0668 Pmen_0669     TRUE 0.968 -3.000 0.154 1.000 N NA
 3613859 3613860 Pmen_0671 Pmen_0672     FALSE 0.134 94.000 0.000 1.000   NA
 3613860 3613861 Pmen_0672 Pmen_0673     FALSE 0.084 159.000 0.000 NA   NA
 3613861 3613862 Pmen_0673 Pmen_0674     TRUE 0.999 0.000 0.865 NA Y NA
 3613862 3613863 Pmen_0674 Pmen_0675     TRUE 0.958 136.000 0.938 NA Y NA
 3613863 3613864 Pmen_0675 Pmen_0676     FALSE 0.020 341.000 0.000 1.000 N NA
 3613864 3613865 Pmen_0676 Pmen_0677     TRUE 0.494 100.000 0.190 1.000 N NA
 3613865 3613866 Pmen_0677 Pmen_0678     TRUE 0.998 9.000 0.706 0.063 Y NA
 3613867 3613868 Pmen_0679 Pmen_0680     FALSE 0.168 56.000 0.000 NA   NA
 3613868 3613869 Pmen_0680 Pmen_0681     TRUE 0.986 1.000 0.321 NA   NA
 3613869 3613870 Pmen_0681 Pmen_0682     FALSE 0.171 108.000 0.009 NA   NA
 3613870 3613871 Pmen_0682 Pmen_0683     FALSE 0.195 68.000 0.009 NA   NA
 3613871 3613872 Pmen_0683 Pmen_0684     FALSE 0.084 193.000 0.008 NA   NA
 3613872 3613873 Pmen_0684 Pmen_0685     TRUE 0.445 35.000 0.008 NA   NA
 3613874 3613875 Pmen_0686 Pmen_0687     FALSE 0.115 80.000 0.000 NA N NA
 3613875 3613876 Pmen_0687 Pmen_0688     FALSE 0.129 82.000 0.000 1.000 N NA
 3613876 3613877 Pmen_0688 Pmen_0689     FALSE 0.116 128.000 0.000 1.000 N NA
 3613877 3613878 Pmen_0689 Pmen_0690     FALSE 0.251 70.000 0.027 1.000 N NA
 3613878 3613879 Pmen_0690 Pmen_0691     FALSE 0.126 79.000 0.000 NA   NA
 3613880 3613881 Pmen_0692 Pmen_0693 ureC ureB TRUE 0.952 88.000 0.486 0.001 Y NA
 3613881 3613882 Pmen_0693 Pmen_0694 ureB   TRUE 0.848 8.000 0.010 1.000 N NA
 3613882 3613883 Pmen_0694 Pmen_0695   ureA TRUE 0.906 4.000 0.029 1.000 N NA
 3613883 3613884 Pmen_0695 Pmen_0696 ureA   TRUE 0.835 186.000 0.664 0.002 N NA
 3613884 3613885 Pmen_0696 Pmen_0697     FALSE 0.259 238.000 0.221 1.000 N NA
 3613885 3613886 Pmen_0697 Pmen_0698     TRUE 0.916 89.000 0.731 0.021   NA
 3613886 3613887 Pmen_0698 Pmen_0699     TRUE 0.997 -3.000 0.823 1.000   NA
 3613887 3613888 Pmen_0699 Pmen_0700     TRUE 0.999 0.000 0.758 0.067 Y NA
 3613888 3613889 Pmen_0700 Pmen_0701     TRUE 0.912 158.000 0.654 1.000 Y NA
 3613889 3613890 Pmen_0701 Pmen_0702     FALSE 0.246 75.000 0.026 1.000 N NA
 3613890 3613891 Pmen_0702 Pmen_0703     TRUE 0.959 2.000 0.114 1.000 N NA
 3613891 3613892 Pmen_0703 Pmen_0704     TRUE 0.667 118.000 0.343 1.000 N NA
 3613892 3613893 Pmen_0704 Pmen_0705     FALSE 0.028 261.000 0.000 NA N NA
 3613893 3613894 Pmen_0705 Pmen_0706     TRUE 0.504 34.000 0.020 NA N NA
 3613894 3613895 Pmen_0706 Pmen_0707     FALSE 0.179 110.000 0.010 1.000 N NA
 3613895 3613896 Pmen_0707 Pmen_0708   purH TRUE 0.592 220.000 0.238 1.000 Y NA
 3613896 3613897 Pmen_0708 Pmen_0709 purH fis FALSE 0.406 72.000 0.101 1.000 N NA
 3613897 3613898 Pmen_0709 Pmen_0710 fis   TRUE 0.969 -3.000 0.161 1.000 N NA
 3613898 3613899 Pmen_0710 Pmen_0711     FALSE 0.058 228.000 0.003 NA   NA
 3613899 3613900 Pmen_0711 Pmen_0712   prmA FALSE 0.122 158.000 0.006 NA   NA
 3613900 3613901 Pmen_0712 Pmen_0713 prmA   FALSE 0.408 140.000 0.152 1.000 N NA
 3613901 3613902 Pmen_0713 Pmen_0714     TRUE 0.990 18.000 0.275 0.001 Y NA
 3613902 3613903 Pmen_0714 Pmen_0715     TRUE 0.713 51.000 0.254 1.000 N NA
 3613903 3613904 Pmen_0715 Pmen_0716   dipZ FALSE 0.160 144.000 0.010 1.000 N NA
 3613904 3613905 Pmen_0716 Pmen_0717 dipZ   TRUE 0.516 158.000 0.273 1.000 N NA
 3613905 3613906 Pmen_0717 Pmen_0718     FALSE 0.120 110.000 0.000 1.000 N NA
 3613906 3613907 Pmen_0718 Pmen_0719     TRUE 0.990 4.000 0.286 0.009 N NA
 3613907 3613908 Pmen_0719 Pmen_0720     TRUE 0.996 10.000 0.765 0.009   NA
 3613908 3613909 Pmen_0720 Pmen_0721     FALSE 0.124 129.000 0.000 1.000   NA
 3613909 3613910 Pmen_0721 Pmen_0722     FALSE 0.372 256.000 0.000 0.002 Y NA
 3613910 3613911 Pmen_0722 Pmen_0723     FALSE 0.112 136.000 0.000 1.000 N NA
 3613912 3613913 Pmen_0724 Pmen_0725     TRUE 0.959 0.000 0.101 NA   NA
 3613913 3613914 Pmen_0725 Pmen_0726     FALSE 0.051 279.000 0.017 1.000 N NA
 3613914 3613915 Pmen_0726 Pmen_0727     FALSE 0.212 123.000 0.023 1.000 N NA
 3613916 3613917 Pmen_0728 Pmen_0729     TRUE 0.450 35.000 0.009 NA   NA
 3613918 3613919 Pmen_0730 Pmen_0731     FALSE 0.136 85.000 0.000 1.000   NA
 3613919 3613920 Pmen_0731 Pmen_0732     FALSE 0.134 73.000 0.000 1.000 N NA
 3613920 3613921 Pmen_0732 Pmen_0733     FALSE 0.137 69.000 0.000 1.000 N NA
 3613921 3613922 Pmen_0733 Pmen_0734     TRUE 0.463 148.000 0.000 1.000 Y NA
 3613923 3613924 Pmen_0735 Pmen_0736     FALSE 0.081 162.000 0.000 NA   NA
 3613924 3613925 Pmen_0736 Pmen_0737     FALSE 0.313 37.000 0.000 NA   NA
 3613925 3613926 Pmen_0737 Pmen_0738     TRUE 0.835 17.000 0.071 NA   NA
 3613926 3613927 Pmen_0738 Pmen_0739     TRUE 0.952 23.000 0.455 NA   NA
 3613927 3613928 Pmen_0739 Pmen_0740     FALSE 0.375 76.000 0.087 NA   NA
 3613928 3613929 Pmen_0740 Pmen_0741     TRUE 0.954 -3.000 0.088 NA   NA
 3613929 3613930 Pmen_0741 Pmen_0742     FALSE 0.231 141.000 0.036 NA   NA
 3613933 3613934 Pmen_0745 Pmen_0746     FALSE 0.016 398.000 0.000 1.000 N NA
 3613934 3613935 Pmen_0746 Pmen_0747     TRUE 0.999 3.000 0.750 0.066 Y NA
 3613935 3613936 Pmen_0747 Pmen_0748     FALSE 0.278 154.000 0.075 NA   NA
 3613936 3613937 Pmen_0748 Pmen_0749     FALSE 0.129 70.000 0.000 NA   NA
 3613937 3613938 Pmen_0749 Pmen_0750     TRUE 0.980 0.000 0.233 NA   NA
 3613940 3613941 Pmen_0752 Pmen_0753     FALSE 0.114 112.000 0.000 NA   NA
 3613941 3613942 Pmen_0753 Pmen_0754     FALSE 0.126 79.000 0.000 NA   NA
 3613947 3613948 Pmen_0759 Pmen_0760 glyA   TRUE 0.458 196.000 0.333 1.000 N NA
 3613948 3613949 Pmen_0760 Pmen_0761     TRUE 0.598 16.000 0.000 NA   NA
 3613951 3613952 Pmen_0763 Pmen_0764     TRUE 0.990 10.000 0.600 NA   NA
 3613953 3613954 Pmen_R0004 Pmen_R0005     TRUE 0.747 10.000 0.000 NA   NA
 3613954 3613955 Pmen_R0005 Pmen_R0006     TRUE 0.776 7.000 0.000 NA   NA
 3613956 3613957 Pmen_0765 Pmen_0766     TRUE 0.866 64.000 0.667 NA   NA
 3613957 3613958 Pmen_0766 Pmen_0767     TRUE 0.685 25.000 0.039 NA   NA
 3613958 3613959 Pmen_0767 Pmen_0768     TRUE 0.935 -3.000 0.039 1.000   NA
 3613960 3613961 Pmen_0769 Pmen_0770     TRUE 0.731 24.000 0.054 NA   NA
 3613962 3613963 Pmen_0771 Pmen_0772   coaE TRUE 0.930 -3.000 0.033 1.000   NA
 3613963 3613964 Pmen_0772 Pmen_0773 coaE   FALSE 0.297 168.000 0.122 1.000 N NA
 3613964 3613965 Pmen_0773 Pmen_0774     TRUE 0.997 1.000 0.454 1.000 Y NA
 3613965 3613966 Pmen_0774 Pmen_0775     TRUE 0.998 3.000 0.362 0.014 Y NA
 3613966 3613967 Pmen_0775 Pmen_0776     FALSE 0.031 267.000 0.000 1.000 N NA
 3613970 3613971 Pmen_0779 Pmen_0780     FALSE 0.048 374.000 0.048 NA   NA
 3613971 3613972 Pmen_0780 Pmen_0781     TRUE 0.993 3.000 0.249 1.000 Y NA
 3613972 3613973 Pmen_0781 Pmen_0782     FALSE 0.052 342.000 0.042 1.000 N NA
 3613977 3613978 Pmen_0786 Pmen_0787     TRUE 0.989 0.000 0.101 1.000 Y NA
 3613978 3613979 Pmen_0787 Pmen_0788     TRUE 0.995 12.000 0.562 1.000 Y NA
 3613979 3613980 Pmen_0788 Pmen_0789     FALSE 0.114 118.000 0.000 NA   NA
 3613984 3613985 Pmen_0793 Pmen_0794     FALSE 0.125 91.000 0.000 1.000 N NA
 3613985 3613986 Pmen_0794 Pmen_0795     TRUE 0.998 -3.000 0.556 1.000 Y NA
 3613986 3613987 Pmen_0795 Pmen_0796     TRUE 0.634 89.000 0.300 1.000 N NA
 3613987 3613988 Pmen_0796 Pmen_0797     TRUE 0.993 0.000 0.200 1.000 Y NA
 3613988 3613989 Pmen_0797 Pmen_0798     TRUE 0.965 12.000 0.035 1.000 Y NA
 3613989 3613990 Pmen_0798 Pmen_0799     TRUE 0.999 -3.000 0.833 1.000 Y NA
 3613990 3613991 Pmen_0799 Pmen_0800     TRUE 0.909 4.000 0.033 NA   NA
 3613991 3613992 Pmen_0800 Pmen_0801     FALSE 0.016 381.000 0.000 NA   NA
 3613992 3613993 Pmen_0801 Pmen_0802     FALSE 0.027 288.000 0.000 1.000 N NA
 3613993 3613994 Pmen_0802 Pmen_0803     TRUE 0.610 137.000 0.300 1.000   NA
 3613994 3613995 Pmen_0803 Pmen_0804     TRUE 0.783 26.000 0.095 1.000   NA
 3613995 3613996 Pmen_0804 Pmen_0805     FALSE 0.038 243.000 0.000 1.000 N NA
 3613999 3614000 Pmen_0808 Pmen_0809     FALSE 0.143 76.000 0.000 1.000   NA
 3614001 3614002 Pmen_0810 Pmen_0811     FALSE 0.126 87.000 0.000 1.000 N NA
 3614003 3614004 Pmen_0812 Pmen_0813     FALSE 0.313 37.000 0.000 NA   NA
 3614004 3614005 Pmen_0813 Pmen_0814     FALSE 0.118 97.000 0.000 NA   NA
 3614005 3614006 Pmen_0814 Pmen_0815     FALSE 0.011 688.000 0.000 NA   NA
 3614006 3614007 Pmen_0815 Pmen_0816     FALSE 0.028 273.000 0.000 NA   NA
 3614007 3614008 Pmen_0816 Pmen_0817     TRUE 0.988 7.000 0.500 NA   NA
 3614008 3614009 Pmen_0817 Pmen_0818     TRUE 0.849 75.000 0.667 NA   NA
 3614009 3614010 Pmen_0818 Pmen_0819     TRUE 0.997 -3.000 1.000 NA   NA
 3614010 3614011 Pmen_0819 Pmen_0820     TRUE 0.834 -3.000 0.000 NA   NA
 3614011 3614012 Pmen_0820 Pmen_0821     FALSE 0.107 134.000 0.000 NA   NA
 3614012 3614013 Pmen_0821 Pmen_0822     FALSE 0.140 65.000 0.000 NA   NA
 3614016 3614017 Pmen_0825 Pmen_0826     TRUE 0.996 6.000 0.945 1.000 N NA
 3614017 3614018 Pmen_0826 Pmen_0827     FALSE 0.295 93.000 0.000 0.066 N NA
 3614019 3614020 Pmen_0828 Pmen_0829     TRUE 0.553 40.000 0.057 NA   NA
 3614022 3614023 Pmen_0831 Pmen_0832     FALSE 0.400 59.000 0.062 1.000   NA
 3614026 3614027 Pmen_0835 Pmen_0836     TRUE 0.887 35.000 0.000 0.023 Y NA
 3614028 3614029 Pmen_0837 Pmen_0838 dppF   TRUE 0.998 0.000 0.377 0.001 Y NA
 3614029 3614030 Pmen_0838 Pmen_0839     TRUE 0.920 103.000 0.560 1.000 Y NA
 3614030 3614031 Pmen_0839 Pmen_0840     TRUE 0.967 100.000 0.779 0.066 Y NA
 3614031 3614032 Pmen_0840 Pmen_0841     TRUE 0.547 162.000 0.000 0.066 Y NA
 3614032 3614033 Pmen_0841 Pmen_0842     FALSE 0.230 175.000 0.077 1.000 N NA
 3614035 3614036 Pmen_0844 Pmen_0845     TRUE 0.748 54.000 0.000 0.066 Y NA
 3614036 3614037 Pmen_0845 Pmen_0846     FALSE 0.042 226.000 0.000 NA   NA
 3614038 3614039 Pmen_0847 Pmen_0848     TRUE 0.994 16.000 0.682 1.000 Y NA
 3614039 3614040 Pmen_0848 Pmen_0849     FALSE 0.192 166.000 0.038 1.000   NA
 3614041 3614042 Pmen_0850 Pmen_0851     TRUE 0.837 3.000 0.000 1.000   NA
 3614042 3614043 Pmen_0851 Pmen_0852     FALSE 0.118 92.000 0.000 NA   NA
 3614043 3614044 Pmen_0852 Pmen_0853   gatB FALSE 0.192 70.000 0.010 NA   NA
 3614044 3614045 Pmen_0853 Pmen_0854 gatB gatA TRUE 0.997 12.000 0.492 0.001 Y NA
 3614045 3614046 Pmen_0854 Pmen_0855 gatA gatC TRUE 0.997 16.000 0.643 0.001 Y NA
 3614047 3614048 Pmen_0856 Pmen_0857     TRUE 0.834 133.000 0.689 1.000 N NA
 3614048 3614049 Pmen_0857 Pmen_0858     TRUE 0.999 0.000 0.550 0.002 Y NA
 3614049 3614050 Pmen_0858 Pmen_0859     TRUE 0.651 50.000 0.206 NA N NA
 3614050 3614051 Pmen_0859 Pmen_0860     TRUE 0.712 101.000 0.417 NA N NA
 3614051 3614052 Pmen_0860 Pmen_0861     TRUE 0.942 18.000 0.296 NA   NA
 3614052 3614053 Pmen_0861 Pmen_0862     TRUE 0.872 38.000 0.358 NA   NA
 3614053 3614054 Pmen_0862 Pmen_0863     TRUE 0.979 3.000 0.259 NA   NA
 3614057 3614058 Pmen_0866 Pmen_0867     TRUE 0.917 15.000 0.182 NA   NA
 3614058 3614059 Pmen_0867 Pmen_0868     TRUE 0.969 3.000 0.186 NA   NA
 3614059 3614060 Pmen_0868 Pmen_0869     TRUE 0.989 13.000 0.728 NA N NA
 3614060 3614061 Pmen_0869 Pmen_0870     TRUE 0.876 99.000 0.820 NA N NA
 3614061 3614062 Pmen_0870 Pmen_0871     TRUE 0.437 137.000 0.163 1.000   NA
 3614062 3614063 Pmen_0871 Pmen_0872     TRUE 0.993 0.000 0.543 NA   NA
 3614063 3614064 Pmen_0872 Pmen_0873     TRUE 0.986 -13.000 0.459 NA   NA
 3614064 3614065 Pmen_0873 Pmen_0874     TRUE 0.991 9.000 0.617 NA   NA
 3614065 3614066 Pmen_0874 Pmen_0875     TRUE 0.994 0.000 0.598 1.000   NA
 3614067 3614068 Pmen_0876 Pmen_0877     TRUE 0.998 0.000 0.530 NA Y NA
 3614068 3614069 Pmen_0877 Pmen_0878     TRUE 0.994 0.000 0.562 NA   NA
 3614069 3614070 Pmen_0878 Pmen_0879     TRUE 0.872 15.000 0.091 NA   NA
 3614070 3614071 Pmen_0879 Pmen_0880     TRUE 0.988 -3.000 0.353 NA   NA
 3614071 3614072 Pmen_0880 Pmen_0881     FALSE 0.305 125.000 0.067 NA   NA
 3614072 3614073 Pmen_0881 Pmen_0882     TRUE 0.904 23.000 0.258 NA N NA
 3614073 3614074 Pmen_0882 Pmen_0883   hisG TRUE 0.465 64.000 0.123 1.000 N NA
 3614074 3614075 Pmen_0883 Pmen_0884 hisG hisD TRUE 0.894 124.000 0.254 0.004 Y NA
 3614075 3614076 Pmen_0884 Pmen_0885 hisD   TRUE 0.805 131.000 0.087 0.004 Y NA
 3614077 3614078 Pmen_0886 Pmen_0887     TRUE 0.973 14.000 0.152 NA Y NA
 3614078 3614079 Pmen_0887 Pmen_0888     FALSE 0.259 87.000 0.034 1.000 N NA
 3614080 3614081 Pmen_0889 Pmen_0890     FALSE 0.218 133.000 0.030 NA   NA
 3614081 3614082 Pmen_0890 Pmen_0891     TRUE 0.960 13.000 0.096 0.001 N NA
 3614084 3614085 Pmen_0893 Pmen_0894     FALSE 0.276 135.000 0.048 1.000   NA
 3614085 3614086 Pmen_0894 Pmen_0895     FALSE 0.308 99.000 0.061 NA   NA
 3614087 3614088 Pmen_0896 Pmen_0897     FALSE 0.326 129.000 0.080 NA   NA
 3614089 3614090 Pmen_0898 Pmen_0899     FALSE 0.135 72.000 0.000 1.000 N NA
 3614092 3614093 Pmen_0901 Pmen_0902 rplM rpsI TRUE 0.996 15.000 0.601 0.012 Y NA
 3614093 3614094 Pmen_0902 Pmen_0903 rpsI   FALSE 0.050 254.000 0.006 1.000 N NA
 3614094 3614095 Pmen_0903 Pmen_0904     TRUE 0.997 0.000 0.233 0.001 Y NA
 3614095 3614096 Pmen_0904 Pmen_0905     TRUE 0.999 0.000 0.630 0.001 Y NA
 3614096 3614097 Pmen_0905 Pmen_0906     TRUE 0.581 165.000 0.370 NA N NA
 3614097 3614098 Pmen_0906 Pmen_0907     TRUE 0.989 15.000 0.831 NA   NA
 3614099 3614100 Pmen_0908 Pmen_0909   gmhA TRUE 0.994 -3.000 0.613 NA   NA
 3614100 3614101 Pmen_0909 Pmen_0910 gmhA   TRUE 0.849 26.000 0.187 1.000 N NA
 3614101 3614102 Pmen_0910 Pmen_0911     TRUE 0.970 -3.000 0.172 NA   NA
 3614103 3614104 Pmen_0912 Pmen_R0007     FALSE 0.078 165.000 0.000 NA   NA
 3614104 3614105 Pmen_R0007 Pmen_0913     FALSE 0.020 327.000 0.000 NA   NA
 3614105 3614106 Pmen_0913 Pmen_0914   mraW TRUE 0.994 3.000 0.635 NA   NA
 3614106 3614107 Pmen_0914 Pmen_0915 mraW   TRUE 0.979 -3.000 0.227 1.000 N NA
 3614107 3614108 Pmen_0915 Pmen_0916     TRUE 0.968 -3.000 0.153 1.000 N NA
 3614108 3614109 Pmen_0916 Pmen_0917   murE TRUE 0.988 0.000 0.073 1.000 Y NA
 3614109 3614110 Pmen_0917 Pmen_0918 murE   TRUE 0.999 -7.000 0.569 0.002 Y NA
 3614110 3614111 Pmen_0918 Pmen_0919   mraY TRUE 0.997 1.000 0.309 0.004 Y NA
 3614111 3614112 Pmen_0919 Pmen_0920 mraY murD TRUE 0.999 7.000 0.647 0.004 Y NA
 3614112 3614113 Pmen_0920 Pmen_0921 murD   TRUE 0.993 0.000 0.297 0.003 N NA
 3614113 3614114 Pmen_0921 Pmen_0922   murG TRUE 0.992 -10.000 0.647 1.000 N NA
 3614114 3614115 Pmen_0922 Pmen_0923 murG murC TRUE 0.993 -7.000 0.283 1.000 Y NA
 3614115 3614116 Pmen_0923 Pmen_0924 murC ddl TRUE 0.995 -3.000 0.153 0.004 Y NA
 3614116 3614117 Pmen_0924 Pmen_0925 ddl   TRUE 0.995 4.000 0.372 NA Y NA
 3614117 3614118 Pmen_0925 Pmen_0926     TRUE 0.962 16.000 0.389 NA N NA
 3614118 3614119 Pmen_0926 Pmen_0927     TRUE 0.958 43.000 0.460 1.000 Y NA
 3614119 3614120 Pmen_0927 Pmen_0928   lpxC FALSE 0.418 112.000 0.134 1.000 N NA
 3614122 3614123 Pmen_0930 Pmen_0931   secA FALSE 0.266 155.000 0.068 1.000 N NA
 3614123 3614124 Pmen_0931 Pmen_0932 secA argJ FALSE 0.329 152.000 0.102 1.000 N NA
 3614124 3614125 Pmen_0932 Pmen_0933 argJ   FALSE 0.173 131.000 0.011 1.000 N NA
 3614125 3614126 Pmen_0933 Pmen_0934     TRUE 0.935 -3.000 0.042 1.000 N NA
 3614127 3614128 Pmen_0935 Pmen_0936     TRUE 0.911 4.000 0.030 1.000   NA
 3614128 3614129 Pmen_0936 Pmen_0937     FALSE 0.286 107.000 0.049 1.000 N NA
 3614129 3614130 Pmen_0937 Pmen_0938     TRUE 0.919 -3.000 0.027 1.000 N NA
 3614131 3614132 Pmen_0939 Pmen_0940     FALSE 0.206 104.000 0.021 NA   NA
 3614133 3614134 Pmen_0941 Pmen_0942     TRUE 0.617 44.000 0.120 NA   NA
 3614135 3614136 Pmen_0943 Pmen_0944     FALSE 0.384 151.000 0.154 NA   NA
 3614137 3614138 Pmen_0945 Pmen_0946   upp TRUE 0.988 3.000 0.101 1.000 Y NA
 3614143 3614144 Pmen_0951 Pmen_0952     TRUE 0.434 145.000 0.169 1.000   NA
 3614144 3614145 Pmen_0952 Pmen_0953   ileS TRUE 0.981 -3.000 0.254 1.000 N NA
 3614145 3614146 Pmen_0953 Pmen_0954 ileS lspA TRUE 0.956 -7.000 0.147 1.000 N NA
 3614146 3614147 Pmen_0954 Pmen_0955 lspA   TRUE 0.990 -3.000 0.417 1.000 N NA
 3614147 3614148 Pmen_0955 Pmen_0956   ispH TRUE 0.808 139.000 0.626 1.000 N NA
 3614149 3614150 Pmen_0957 Pmen_0958     TRUE 0.971 3.000 0.000 NA Y NA
 3614150 3614151 Pmen_0958 Pmen_0959     TRUE 0.897 12.000 0.077 NA   NA
 3614151 3614152 Pmen_0959 Pmen_0960     TRUE 0.995 -3.000 0.667 NA   NA
 3614152 3614153 Pmen_0960 Pmen_0961     TRUE 0.998 -3.000 0.750 NA Y NA
 3614153 3614154 Pmen_0961 Pmen_0962     TRUE 0.960 9.000 0.000 NA Y NA
 3614154 3614155 Pmen_0962 Pmen_0963     TRUE 0.463 142.000 0.000 NA Y NA
 3614157 3614158 Pmen_0965 Pmen_0966     TRUE 0.997 3.000 0.556 1.000 Y NA
 3614158 3614159 Pmen_0966 Pmen_0967     TRUE 0.860 -10.000 0.016 NA   NA
 3614159 3614160 Pmen_0967 Pmen_0968     FALSE 0.047 212.000 0.000 NA   NA
 3614161 3614162 Pmen_0969 Pmen_0970     TRUE 0.970 -3.000 0.168 NA   NA
 3614162 3614163 Pmen_0970 Pmen_0971     FALSE 0.113 122.000 0.000 NA   NA
 3614163 3614164 Pmen_0971 Pmen_0972     TRUE 0.733 27.000 0.070 1.000 N NA
 3614164 3614165 Pmen_0972 Pmen_0973     FALSE 0.217 47.000 0.000 NA   NA
 3614168 3614169 Pmen_0976 Pmen_0977     FALSE 0.190 72.000 0.007 1.000 N NA
 3614171 3614172 Pmen_0979 Pmen_0980     TRUE 0.997 -3.000 0.950 NA   NA
 3614172 3614173 Pmen_0980 Pmen_0981     TRUE 0.906 85.000 0.947 NA   NA
 3614174 3614175 Pmen_0982 Pmen_0983     TRUE 0.521 192.000 0.400 NA   NA
 3614175 3614176 Pmen_0983 Pmen_0984     TRUE 0.996 3.000 0.800 NA   NA
 3614176 3614177 Pmen_0984 Pmen_0985     TRUE 0.996 -13.000 1.000 NA   NA
 3614177 3614178 Pmen_0985 Pmen_0986     TRUE 0.991 12.000 0.800 NA   NA
 3614178 3614179 Pmen_0986 Pmen_0987     FALSE 0.037 240.000 0.000 NA   NA
 3614179 3614180 Pmen_0987 Pmen_0988     TRUE 0.888 128.000 0.444 1.000 Y NA
 3614180 3614181 Pmen_0988 Pmen_0989     FALSE 0.265 221.000 0.000 1.000 Y NA
 3614181 3614182 Pmen_0989 Pmen_0990     TRUE 0.890 -3.000 0.010 NA   NA
 3614182 3614183 Pmen_0990 Pmen_0991     FALSE 0.178 155.000 0.027 NA   NA
 3614185 3614186 Pmen_0993 Pmen_0994     TRUE 0.999 -3.000 0.852 1.000 Y NA
 3614186 3614187 Pmen_0994 Pmen_0995     TRUE 0.995 0.000 0.292 1.000 Y NA
 3614187 3614188 Pmen_0995 Pmen_0996     TRUE 0.749 16.000 0.021 NA   NA
 3614188 3614189 Pmen_0996 Pmen_0997     FALSE 0.153 60.000 0.000 NA   NA
 3614190 3614191 Pmen_0998 Pmen_0999     TRUE 0.565 106.000 0.250 NA   NA
 3614191 3614192 Pmen_0999 Pmen_1000     FALSE 0.123 82.000 0.000 NA   NA
 3614192 3614193 Pmen_1000 Pmen_1001     FALSE 0.196 76.000 0.012 NA   NA
 3614194 3614195 Pmen_1002 Pmen_1003     FALSE 0.292 68.000 0.035 1.000   NA
 3614195 3614196 Pmen_1003 Pmen_1004     TRUE 0.943 0.000 0.055 NA   NA
 3614198 3614199 Pmen_1006 Pmen_1007   ilvH TRUE 0.998 2.000 0.371 0.001 Y NA
 3614201 3614202 Pmen_1009 Pmen_1010     FALSE 0.237 148.000 0.041 1.000 N NA
 3614202 3614203 Pmen_1010 Pmen_1011     FALSE 0.275 67.000 0.029 1.000   NA
 3614203 3614204 Pmen_1011 Pmen_1012     TRUE 0.998 0.000 0.790 0.064   NA
 3614204 3614205 Pmen_1012 Pmen_R0008     FALSE 0.012 546.000 0.000 NA   NA
 3614205 3614206 Pmen_R0008 Pmen_R0009     FALSE 0.127 74.000 0.000 NA   NA
 3614206 3614207 Pmen_R0009 Pmen_R0010     TRUE 0.481 23.000 0.000 NA   NA
 3614207 3614208 Pmen_R0010 Pmen_R0011     FALSE 0.033 254.000 0.000 NA   NA
 3614208 3614209 Pmen_R0011 Pmen_R0012     FALSE 0.098 148.000 0.000 NA   NA
 3614209 3614210 Pmen_R0012 Pmen_1013     FALSE 0.058 190.000 0.000 NA   NA
 3614210 3614211 Pmen_1013 Pmen_1014     TRUE 0.940 -13.000 0.114 NA   NA
 3614211 3614212 Pmen_1014 Pmen_1015     TRUE 0.995 -7.000 0.840 NA   NA
 3614213 3614214 Pmen_1016 Pmen_1017     TRUE 0.449 25.000 0.000 NA   NA
 3614214 3614215 Pmen_1017 Pmen_1018     TRUE 0.987 -3.000 0.333 NA   NA
 3614215 3614216 Pmen_1018 Pmen_1019     TRUE 0.967 25.000 0.636 NA   NA
 3614216 3614217 Pmen_1019 Pmen_1020     FALSE 0.292 178.000 0.150 NA   NA
 3614217 3614218 Pmen_1020 Pmen_1021     TRUE 0.708 95.000 0.400 NA   NA
 3614218 3614219 Pmen_1021 Pmen_1022     TRUE 0.964 38.000 0.889 NA   NA
 3614219 3614220 Pmen_1022 Pmen_1023     TRUE 0.991 14.000 0.889 NA   NA
 3614220 3614221 Pmen_1023 Pmen_1024   algL TRUE 0.574 185.000 0.438 NA   NA
 3614221 3614222 Pmen_1024 Pmen_1025 algL   TRUE 0.987 11.000 0.562 NA   NA
 3614222 3614223 Pmen_1025 Pmen_1026     TRUE 0.982 12.000 0.500 NA   NA
 3614223 3614224 Pmen_1026 Pmen_1027     TRUE 0.988 12.000 0.625 NA   NA
 3614224 3614225 Pmen_1027 Pmen_1028     TRUE 0.852 -3.000 0.000 1.000   NA
 3614225 3614226 Pmen_1028 Pmen_1029     TRUE 0.723 11.000 0.000 NA   NA
 3614226 3614227 Pmen_1029 Pmen_1030     FALSE 0.424 27.000 0.000 NA   NA
 3614227 3614228 Pmen_1030 Pmen_1031     TRUE 0.655 49.000 0.000 NA Y NA
 3614228 3614229 Pmen_1031 Pmen_1032     FALSE 0.011 698.000 0.000 NA   NA
 3614230 3614231 Pmen_1033 Pmen_1034   moaC FALSE 0.133 165.000 0.013 1.000 N NA
 3614231 3614232 Pmen_1034 Pmen_1035 moaC   TRUE 0.992 -3.000 0.175 1.000 Y NA
 3614232 3614233 Pmen_1035 Pmen_1036     TRUE 0.887 154.000 0.501 1.000 Y NA
 3614235 3614236 Pmen_1038 Pmen_1039     FALSE 0.024 291.000 0.000 NA   NA
 3614236 3614237 Pmen_1039 Pmen_1040     FALSE 0.115 102.000 0.000 NA   NA
 3614238 3614239 Pmen_1041 Pmen_1042     FALSE 0.424 27.000 0.000 NA   NA
 3614243 3614244 Pmen_1045 Pmen_1046     TRUE 0.977 -3.000 0.214 NA   NA
 3614244 3614245 Pmen_1046 Pmen_1047     FALSE 0.183 53.000 0.000 NA   NA
 3614246 3614247 Pmen_1048 Pmen_1049     FALSE 0.012 500.000 0.000 NA   NA
 3614247 3614248 Pmen_1049 Pmen_1050     TRUE 0.531 20.000 0.000 NA   NA
 3614249 3614250 Pmen_1051 Pmen_1052     FALSE 0.049 223.000 0.000 1.000   NA
 3614250 3614251 Pmen_1052 Pmen_1053     TRUE 0.950 26.000 0.184 1.000 Y NA
 3614251 3614252 Pmen_1053 Pmen_1054     TRUE 0.954 64.000 0.496 0.018 Y NA
 3614252 3614253 Pmen_1054 Pmen_1055     FALSE 0.402 106.000 0.122 1.000 N NA
 3614253 3614254 Pmen_1055 Pmen_R0014     FALSE 0.173 55.000 0.000 NA   NA
 3614254 3614255 Pmen_R0014 Pmen_R0015     FALSE 0.163 57.000 0.000 NA   NA
 3614255 3614256 Pmen_R0015 Pmen_1056   ipk FALSE 0.424 27.000 0.000 NA   NA
 3614256 3614257 Pmen_1056 Pmen_1057 ipk lolB FALSE 0.107 261.000 0.072 1.000 N NA
 3614257 3614258 Pmen_1057 Pmen_1058 lolB   TRUE 0.952 0.000 0.072 1.000 N NA
 3614259 3614260 Pmen_1059 Pmen_1060 hemA prfA TRUE 0.985 -3.000 0.171 0.041 N NA
 3614260 3614261 Pmen_1060 Pmen_1061 prfA   TRUE 0.895 65.000 0.229 0.041 Y NA
 3614261 3614262 Pmen_1061 Pmen_1062     TRUE 0.932 -7.000 0.068 1.000 N NA
 3614262 3614263 Pmen_1062 Pmen_1063     TRUE 0.500 34.000 0.013 1.000 N NA
 3614263 3614264 Pmen_1063 Pmen_1064     FALSE 0.173 103.000 0.004 1.000   NA
 3614265 3614266 Pmen_1065 Pmen_1066     TRUE 0.992 -7.000 0.588 NA   NA
 3614266 3614267 Pmen_1066 Pmen_1067     TRUE 0.978 -13.000 0.311 1.000   NA
 3614267 3614268 Pmen_1067 Pmen_1068     TRUE 0.996 0.000 0.722 1.000   NA
 3614268 3614269 Pmen_1068 Pmen_1069     TRUE 0.987 -3.000 0.217 0.061   NA
 3614269 3614270 Pmen_1069 Pmen_1070     TRUE 0.993 -3.000 0.533 NA   NA
 3614270 3614271 Pmen_1070 Pmen_1071     TRUE 0.937 -3.000 0.048 NA   NA
 3614271 3614272 Pmen_1071 Pmen_1072     TRUE 0.834 -12.000 0.004 1.000 N NA
 3614272 3614273 Pmen_1072 Pmen_1073     TRUE 0.838 0.000 0.000 NA   NA
 3614273 3614274 Pmen_1073 Pmen_1074     FALSE 0.095 255.000 0.055 NA   NA
 3614274 3614275 Pmen_1074 Pmen_1075     TRUE 0.943 -3.000 0.060 NA   NA
 3614276 3614277 Pmen_1076 Pmen_1077   hemH TRUE 0.809 13.000 0.020 1.000   NA
 3614277 3614278 Pmen_1077 Pmen_1078 hemH   FALSE 0.083 165.000 0.000 1.000 N NA
 3614278 3614279 Pmen_1078 Pmen_1079     FALSE 0.108 132.000 0.000 NA   NA
 3614280 3614281 Pmen_1080 Pmen_1081     FALSE 0.131 80.000 0.000 1.000 N NA
 3614283 3614284 Pmen_1083 Pmen_1084     TRUE 0.463 24.000 0.000 NA   NA
 3614286 3614287 Pmen_1086 Pmen_1087     FALSE 0.307 55.000 0.025 NA   NA
 3614287 3614288 Pmen_1087 Pmen_1088     FALSE 0.119 87.000 0.000 NA   NA
 3614288 3614289 Pmen_1088 Pmen_1089     FALSE 0.107 100.000 0.000 NA N NA
 3614289 3614290 Pmen_1089 Pmen_1090     FALSE 0.137 69.000 0.000 1.000 N NA
 3614290 3614291 Pmen_1090 Pmen_1091     TRUE 0.484 25.000 0.000 1.000   NA
 3614291 3614292 Pmen_1091 Pmen_1092     TRUE 0.694 13.000 0.000 1.000   NA
 3614292 3614293 Pmen_1092 Pmen_1093     TRUE 0.999 12.000 0.875 0.013 Y NA
 3614293 3614294 Pmen_1093 Pmen_1094     TRUE 0.686 66.000 0.000 0.064 Y NA
 3614295 3614296 Pmen_1095 Pmen_1096     FALSE 0.126 79.000 0.000 NA   NA
 3614296 3614297 Pmen_1096 Pmen_1097     FALSE 0.145 63.000 0.000 NA   NA
 3614297 3614298 Pmen_1097 Pmen_1098     FALSE 0.232 155.000 0.000 0.085   NA
 3614298 3614299 Pmen_1098 Pmen_1099     FALSE 0.124 93.000 0.000 1.000 N NA
 3614299 3614300 Pmen_1099 Pmen_1100     FALSE 0.051 217.000 0.000 1.000   NA
 3614301 3614302 Pmen_1101 Pmen_1102     TRUE 0.738 32.000 0.115 NA N NA
 3614303 3614304 Pmen_1103 Pmen_1104     TRUE 0.842 -3.000 0.000 1.000 N NA
 3614305 3614306 Pmen_1105 Pmen_1106     TRUE 0.561 49.000 0.121 NA   NA
 3614306 3614307 Pmen_1106 Pmen_1107     TRUE 0.800 196.000 0.483 1.000 Y NA
 3614307 3614308 Pmen_1107 Pmen_1108     TRUE 0.650 67.000 0.033 1.000 Y NA
 3614308 3614309 Pmen_1108 Pmen_1109     TRUE 0.997 17.000 1.000 1.000 Y NA
 3614309 3614310 Pmen_1109 Pmen_1110   putA FALSE 0.014 456.000 0.000 1.000 N NA
 3614312 3614313 Pmen_1112 Pmen_1113     FALSE 0.018 360.000 0.000 NA   NA
 3614313 3614314 Pmen_1113 Pmen_1114     FALSE 0.063 194.000 0.000 1.000   NA
 3614314 3614315 Pmen_1114 Pmen_1115     TRUE 0.908 0.000 0.019 NA   NA
 3614316 3614317 Pmen_1116 Pmen_1117     FALSE 0.119 241.000 0.066 1.000 N NA
 3614320 3614321 Pmen_1120 Pmen_1121     TRUE 0.900 29.000 0.310 1.000 N NA
 3614325 3614326 Pmen_1125 Pmen_1126     TRUE 0.576 144.000 0.286 NA   NA
 3614327 3614328 Pmen_1127 Pmen_1128     FALSE 0.151 67.000 0.000 1.000   NA
 3614328 3614329 Pmen_1128 Pmen_1129     FALSE 0.134 200.000 0.043 1.000 N NA
 3614329 3614330 Pmen_1129 Pmen_1130     TRUE 0.996 -3.000 0.833 NA   NA
 3614330 3614331 Pmen_1130 Pmen_1131     TRUE 0.618 75.000 0.273 NA   NA
 3614331 3614332 Pmen_1131 Pmen_1132     TRUE 0.985 8.000 0.412 NA   NA
 3614332 3614333 Pmen_1132 Pmen_1133     FALSE 0.068 169.000 0.000 NA N NA
 3614333 3614334 Pmen_1133 Pmen_1134     FALSE 0.015 392.000 0.000 NA   NA
 3614334 3614335 Pmen_1134 Pmen_1135     TRUE 0.983 22.000 0.857 NA   NA
 3614335 3614336 Pmen_1135 Pmen_1136     TRUE 0.553 165.000 0.333 NA   NA
 3614337 3614338 Pmen_1137 Pmen_1138     TRUE 0.505 110.000 0.000 1.000 Y NA
 3614338 3614339 Pmen_1138 Pmen_1139     FALSE 0.422 181.000 0.019 1.000 Y NA
 3614339 3614340 Pmen_1139 Pmen_1140     TRUE 0.996 11.000 0.352 0.001 Y NA
 3614342 3614343 Pmen_1142 Pmen_1143     FALSE 0.114 118.000 0.000 NA   NA
 3614343 3614344 Pmen_1143 Pmen_1144     TRUE 0.979 -3.000 0.231 NA   NA
 3614347 3614348 Pmen_1147 Pmen_1148 glk   FALSE 0.171 57.000 0.000 1.000 N NA
 3614348 3614349 Pmen_1148 Pmen_1149     TRUE 0.999 -7.000 0.909 1.000 Y NA
 3614349 3614350 Pmen_1149 Pmen_1150     TRUE 0.469 203.000 0.367 1.000 N NA
 3614350 3614351 Pmen_1150 Pmen_1151     TRUE 0.865 172.000 0.367 0.064 Y NA
 3614351 3614352 Pmen_1151 Pmen_1152     TRUE 0.999 -7.000 0.816 0.064 Y NA
 3614352 3614353 Pmen_1152 Pmen_1153     TRUE 0.998 11.000 0.723 0.064 Y NA
 3614353 3614354 Pmen_1153 Pmen_1154     TRUE 0.786 119.000 0.108 0.084 Y NA
 3614354 3614355 Pmen_1154 Pmen_1155     TRUE 0.969 -6.000 0.000 1.000 Y NA
 3614359 3614360 Pmen_1159 Pmen_1160     FALSE 0.017 361.000 0.000 NA   NA
 3614363 3614364 Pmen_1163 Pmen_1164     TRUE 0.531 20.000 0.000 NA   NA
 3614364 3614365 Pmen_1164 Pmen_1165     TRUE 0.834 -3.000 0.000 NA   NA
 3614365 3614366 Pmen_1165 Pmen_1166     FALSE 0.111 125.000 0.000 NA   NA
 3614367 3614368 Pmen_1167 Pmen_1168     FALSE 0.144 74.000 0.000 1.000   NA
 3614368 3614369 Pmen_1168 Pmen_1169     FALSE 0.021 352.000 0.000 1.000   NA
 3614371 3614372 Pmen_1171 Pmen_1172     FALSE 0.129 70.000 0.000 NA   NA
 3614373 3614374 Pmen_1173 Pmen_1174     TRUE 0.990 -3.000 0.000 0.001 Y NA
 3614375 3614376 Pmen_1175 Pmen_1176     TRUE 0.600 58.000 0.000 1.000 Y NA
 3614376 3614377 Pmen_1176 Pmen_1177     TRUE 0.495 23.000 0.000 1.000 N NA
 3614378 3614379 Pmen_1178 Pmen_1179     FALSE 0.118 95.000 0.000 NA   NA
 3614381 3614382 Pmen_1181 Pmen_1182     TRUE 0.798 42.000 0.273 NA   NA
 3614382 3614383 Pmen_1182 Pmen_1183     TRUE 0.768 89.000 0.500 NA   NA
 3614383 3614384 Pmen_1183 Pmen_1184     TRUE 0.769 87.000 0.500 NA   NA
 3614384 3614385 Pmen_1184 Pmen_1185     TRUE 0.661 93.000 0.333 NA   NA
 3614386 3614387 Pmen_1186 Pmen_1187     TRUE 0.987 -3.000 0.346 NA   NA
 3614388 3614389 Pmen_1188 Pmen_R0016     FALSE 0.059 188.000 0.000 NA   NA
 3614391 3614392 Pmen_1190 Pmen_1191     FALSE 0.137 66.000 0.000 NA   NA
 3614392 3614393 Pmen_1191 Pmen_1192     FALSE 0.287 102.000 0.052 NA   NA
 3614393 3614394 Pmen_1192 Pmen_1193     TRUE 0.690 40.000 0.154 NA   NA
 3614394 3614395 Pmen_1193 Pmen_1194     TRUE 0.919 -3.000 0.029 NA   NA
 3614395 3614396 Pmen_1194 Pmen_1195     FALSE 0.375 32.000 0.000 NA   NA
 3614396 3614397 Pmen_1195 Pmen_R0017     FALSE 0.027 281.000 0.000 NA   NA
 3614397 3614398 Pmen_R0017 Pmen_R0018     TRUE 0.841 -1.000 0.000 NA   NA
 3614403 3614404 Pmen_1200 Pmen_1201     FALSE 0.309 166.000 0.132 NA   NA
 3614404 3614405 Pmen_1201 Pmen_1202     FALSE 0.354 85.000 0.082 NA   NA
 3614405 3614406 Pmen_1202 Pmen_1203     FALSE 0.241 142.000 0.041 NA   NA
 3614406 3614407 Pmen_1203 Pmen_1204     TRUE 0.692 12.000 0.000 NA   NA
 3614407 3614408 Pmen_1204 Pmen_1205     TRUE 0.962 -3.000 0.120 NA   NA
 3614408 3614409 Pmen_1205 Pmen_1206     FALSE 0.129 71.000 0.000 NA   NA
 3614410 3614411 Pmen_1207 Pmen_1208     FALSE 0.048 210.000 0.000 NA   NA
 3614411 3614412 Pmen_1208 Pmen_1209     TRUE 0.508 200.000 0.429 NA N NA
 3614412 3614413 Pmen_1209 Pmen_1210     FALSE 0.108 142.000 0.000 1.000 N NA
 3614413 3614414 Pmen_1210 Pmen_1211     FALSE 0.022 312.000 0.000 NA   NA
 3614414 3614415 Pmen_1211 Pmen_1212     TRUE 0.968 10.000 0.250 NA   NA
 3614415 3614416 Pmen_1212 Pmen_1213     TRUE 0.737 67.000 0.400 NA   NA
 3614416 3614417 Pmen_1213 Pmen_1214     TRUE 0.776 35.000 0.167 1.000   NA
 3614418 3614419 Pmen_1215 Pmen_1216     TRUE 0.801 111.000 0.123 0.070 Y NA
 3614419 3614420 Pmen_1216 Pmen_1217     FALSE 0.155 183.000 0.037 1.000 N NA
 3614420 3614421 Pmen_1217 Pmen_1218     TRUE 0.949 23.000 0.130 1.000 Y NA
 3614421 3614422 Pmen_1218 Pmen_1219     TRUE 0.829 14.000 0.039 1.000 N NA
 3614422 3614423 Pmen_1219 Pmen_1220     FALSE 0.017 387.000 0.000 1.000 N NA
 3614423 3614424 Pmen_1220 Pmen_1221     TRUE 0.993 -3.000 0.411 0.100 N NA
 3614425 3614426 Pmen_1222 Pmen_1223     FALSE 0.271 88.000 0.041 NA   NA
 3614426 3614427 Pmen_1223 Pmen_1224     FALSE 0.117 98.000 0.000 NA   NA
 3614428 3614429 Pmen_1225 Pmen_1226     FALSE 0.139 82.000 0.000 1.000   NA
 3614429 3614430 Pmen_1226 Pmen_1227     TRUE 0.950 -13.000 0.143 1.000   NA
 3614430 3614431 Pmen_1227 Pmen_1228     TRUE 0.936 4.000 0.070 NA   NA
 3614431 3614432 Pmen_1228 Pmen_1229     TRUE 0.994 3.000 0.619 NA   NA
 3614433 3614434 Pmen_1230 Pmen_1231     TRUE 0.734 15.000 0.011 1.000 N NA
 3614434 3614435 Pmen_1231 Pmen_1232     FALSE 0.102 198.000 0.022 1.000 N NA
 3614435 3614436 Pmen_1232 Pmen_1233   minE FALSE 0.041 268.000 0.008 NA N NA
 3614436 3614437 Pmen_1233 Pmen_1234 minE   TRUE 0.998 -3.000 0.618 NA Y NA
 3614437 3614438 Pmen_1234 Pmen_1235   minC TRUE 0.899 103.000 0.466 1.000 Y NA
 3614439 3614440 Pmen_1236 Pmen_1237     TRUE 0.635 37.000 0.069 1.000   NA
 3614441 3614442 Pmen_1238 Pmen_1239     FALSE 0.185 113.000 0.014 NA   NA
 3614442 3614443 Pmen_1239 Pmen_1240     TRUE 0.967 -7.000 0.204 NA   NA
 3614443 3614444 Pmen_1240 Pmen_1241     FALSE 0.120 86.000 0.000 NA   NA
 3614444 3614445 Pmen_1241 Pmen_1242     FALSE 0.143 64.000 0.000 NA   NA
 3614446 3614447 Pmen_1243 Pmen_1244     FALSE 0.035 245.000 0.000 NA   NA
 3614447 3614448 Pmen_1244 Pmen_1245     FALSE 0.391 110.000 0.107 1.000   NA
 3614448 3614449 Pmen_1245 Pmen_1246     TRUE 0.612 75.000 0.267 NA   NA
 3614449 3614450 Pmen_1246 Pmen_1247     TRUE 0.941 10.000 0.133 NA   NA
 3614450 3614451 Pmen_1247 Pmen_1248     FALSE 0.066 180.000 0.000 NA   NA
 3614451 3614452 Pmen_1248 Pmen_1249     FALSE 0.122 83.000 0.000 NA   NA
 3614452 3614453 Pmen_1249 Pmen_1250     FALSE 0.013 457.000 0.000 NA   NA
 3614453 3614454 Pmen_1250 Pmen_1251     FALSE 0.064 183.000 0.000 NA   NA
 3614455 3614456 Pmen_1252 Pmen_1253     FALSE 0.124 95.000 0.000 1.000 N NA
 3614457 3614458 Pmen_1254 Pmen_1255     TRUE 0.817 3.000 0.000 NA   NA
 3614458 3614459 Pmen_1255 Pmen_1256     TRUE 0.764 -13.000 0.000 NA   NA
 3614460 3614461 Pmen_1257 Pmen_1258     TRUE 0.646 21.000 0.013 NA   NA
 3614464 3614465 Pmen_1261 Pmen_1262     TRUE 0.834 -3.000 0.000 NA   NA
 3614466 3614467 Pmen_1263 Pmen_1264     FALSE 0.075 173.000 0.000 1.000 N NA
 3614467 3614468 Pmen_1264 Pmen_1265     FALSE 0.124 98.000 0.000 1.000 N NA
 3614468 3614469 Pmen_1265 Pmen_1266     FALSE 0.306 115.000 0.000 0.060   NA
 3614469 3614470 Pmen_1266 Pmen_1267     FALSE 0.128 72.000 0.000 NA   NA
 3614471 3614472 Pmen_1268 Pmen_1269 aspS   FALSE 0.257 106.000 0.039 NA   NA
 3614472 3614473 Pmen_1269 Pmen_1270   ruvC TRUE 0.536 154.000 0.277 NA   NA
 3614473 3614474 Pmen_1270 Pmen_1271 ruvC ruvA TRUE 0.993 19.000 0.451 0.008 Y NA
 3614474 3614475 Pmen_1271 Pmen_1272 ruvA ruvB TRUE 0.997 14.000 0.549 0.002 Y NA
 3614475 3614476 Pmen_1272 Pmen_1273 ruvB   TRUE 0.481 54.000 0.082 1.000   NA
 3614476 3614477 Pmen_1273 Pmen_1274     TRUE 0.993 3.000 0.593 1.000   NA
 3614477 3614478 Pmen_1274 Pmen_1275     TRUE 0.989 28.000 0.556 0.083 Y NA
 3614478 3614479 Pmen_1275 Pmen_1276     TRUE 0.992 0.000 0.460 1.000   NA
 3614479 3614480 Pmen_1276 Pmen_1277   tolB TRUE 0.985 6.000 0.215 0.008   NA
 3614480 3614481 Pmen_1277 Pmen_1278 tolB   TRUE 0.880 53.000 0.592 1.000 N NA
 3614481 3614482 Pmen_1278 Pmen_1279     TRUE 0.977 7.000 0.278 1.000   NA
 3614482 3614483 Pmen_1279 Pmen_1280     FALSE 0.194 183.000 0.059 1.000   NA
 3614483 3614484 Pmen_1280 Pmen_1281     TRUE 0.981 3.000 0.270 1.000   NA
 3614484 3614485 Pmen_1281 Pmen_R0019     FALSE 0.156 59.000 0.000 NA   NA
 3614485 3614486 Pmen_R0019 Pmen_1282     FALSE 0.105 138.000 0.000 NA   NA
 3614487 3614488 Pmen_1283 Pmen_1284     FALSE 0.337 133.000 0.089 NA   NA
 3614489 3614490 Pmen_1285 Pmen_1286     FALSE 0.327 38.000 0.000 1.000   NA
 3614492 3614493 Pmen_1288 Pmen_1289     FALSE 0.153 60.000 0.000 NA   NA
 3614498 3614499 Pmen_1294 Pmen_1295     TRUE 0.944 6.000 0.095 1.000   NA
 3614499 3614500 Pmen_1295 Pmen_1296     TRUE 0.932 11.000 0.118 1.000   NA
 3614501 3614502 Pmen_1297 Pmen_1298     TRUE 0.797 136.000 0.600 NA   NA
 3614502 3614503 Pmen_1298 Pmen_1299     FALSE 0.047 219.000 0.000 1.000 N NA
 3614503 3614504 Pmen_1299 Pmen_1300   motB TRUE 0.996 10.000 0.566 1.000 Y NA
 3614504 3614505 Pmen_1300 Pmen_1301 motB   FALSE 0.166 62.000 0.000 1.000   NA
 3614505 3614506 Pmen_1301 Pmen_1302     TRUE 0.909 0.000 0.019 NA   NA
 3614507 3614508 Pmen_1303 Pmen_1304     FALSE 0.118 95.000 0.000 NA   NA
 3614508 3614509 Pmen_1304 Pmen_1305     FALSE 0.245 57.000 0.012 NA   NA
 3614511 3614512 Pmen_1307 Pmen_1308     FALSE 0.243 44.000 0.000 NA   NA
 3614514 3614515 Pmen_1310 Pmen_1311 mgsA   TRUE 0.937 15.000 0.006 1.000 Y NA
 3614518 3614519 Pmen_R0020 Pmen_R0021     TRUE 0.598 16.000 0.000 NA   NA
 3614519 3614520 Pmen_R0021 Pmen_1314     FALSE 0.060 187.000 0.000 NA   NA
 3614520 3614521 Pmen_1314 Pmen_1315     FALSE 0.020 338.000 0.000 NA   NA
 3614523 3614524 Pmen_1317 Pmen_1318     TRUE 0.993 3.000 0.562 NA   NA
 3614524 3614525 Pmen_1318 Pmen_1319     TRUE 0.980 -7.000 0.312 NA   NA
 3614526 3614527 Pmen_1320 Pmen_1321     FALSE 0.234 104.000 0.029 1.000 N NA
 3614528 3614529 Pmen_1322 Pmen_1323     FALSE 0.243 156.000 0.000 0.059 N NA
 3614529 3614530 Pmen_1323 Pmen_1324     TRUE 0.897 154.000 0.551 1.000 Y NA
 3614533 3614534 Pmen_1327 Pmen_1328     TRUE 0.994 0.000 0.222 1.000 Y NA
 3614534 3614535 Pmen_1328 Pmen_1329     TRUE 0.998 -3.000 0.360 0.063 Y NA
 3614535 3614536 Pmen_1329 Pmen_1330     TRUE 0.996 -13.000 0.774 0.063   NA
 3614536 3614537 Pmen_1330 Pmen_1331     TRUE 0.985 -3.000 0.290 1.000   NA
 3614537 3614538 Pmen_1331 Pmen_1332     TRUE 0.937 33.000 0.500 1.000   NA
 3614539 3614540 Pmen_1333 Pmen_1334     FALSE 0.058 189.000 0.000 NA   NA
 3614540 3614541 Pmen_1334 Pmen_1335     FALSE 0.357 34.000 0.000 NA   NA
 3614541 3614542 Pmen_1335 Pmen_1336     FALSE 0.077 166.000 0.000 NA   NA
 3614549 3614550 Pmen_1343 Pmen_1344     TRUE 0.540 70.000 0.000 1.000 Y NA
 3614550 3614551 Pmen_1344 Pmen_1345     TRUE 0.584 186.000 0.002 0.001 Y NA
 3614551 3614552 Pmen_1345 Pmen_1346     TRUE 0.990 10.000 0.249 1.000 Y NA
 3614556 3614557 Pmen_1350 Pmen_1351     FALSE 0.108 142.000 0.000 1.000 N NA
 3614557 3614558 Pmen_1351 Pmen_1352     FALSE 0.105 107.000 0.000 NA N NA
 3614558 3614559 Pmen_1352 Pmen_1353     FALSE 0.053 190.000 0.000 NA N NA
 3614559 3614560 Pmen_1353 Pmen_R0022     FALSE 0.015 407.000 0.000 NA   NA
 3614560 3614561 Pmen_R0022 Pmen_1354     FALSE 0.120 86.000 0.000 NA   NA
 3614561 3614562 Pmen_1354 Pmen_1355     FALSE 0.015 392.000 0.000 NA   NA
 3614562 3614563 Pmen_1355 Pmen_1356     TRUE 0.967 4.000 0.189 NA   NA
 3614563 3614564 Pmen_1356 Pmen_1357     TRUE 0.967 0.000 0.148 NA   NA
 3614564 3614565 Pmen_1357 Pmen_1358     FALSE 0.212 93.000 0.019 1.000 N NA
 3614565 3614566 Pmen_1358 Pmen_1359     TRUE 0.825 167.000 0.835 NA   NA
 3614566 3614567 Pmen_1359 Pmen_1360     TRUE 0.994 11.000 0.931 NA   NA
 3614567 3614568 Pmen_1360 Pmen_1361     FALSE 0.140 81.000 0.000 1.000   NA
 3614569 3614570 Pmen_1362 Pmen_1363     TRUE 0.993 -3.000 0.545 NA   NA
 3614571 3614572 Pmen_1364 Pmen_1365     TRUE 0.999 -3.000 0.797 1.000 Y NA
 3614572 3614573 Pmen_1365 Pmen_1366     TRUE 0.720 461.000 0.719 0.063 Y NA
 3614576 3614577 Pmen_1369 Pmen_1370     FALSE 0.126 79.000 0.000 NA   NA
 3614578 3614579 Pmen_1371 Pmen_1372     FALSE 0.416 29.000 0.000 1.000 N NA
 3614579 3614580 Pmen_1372 Pmen_1373     FALSE 0.299 132.000 0.000 0.043 N NA
 3614580 3614581 Pmen_1373 Pmen_1374     TRUE 0.964 116.000 0.627 0.002 Y NA
 3614581 3614582 Pmen_1374 Pmen_1375     TRUE 0.813 95.000 0.242 1.000 Y NA
 3614582 3614583 Pmen_1375 Pmen_1376     TRUE 0.760 7.000 0.000 NA N NA
 3614583 3614584 Pmen_1376 Pmen_1377     FALSE 0.108 98.000 0.000 NA N NA
 3614586 3614587 Pmen_1379 Pmen_1380     TRUE 0.704 11.000 0.000 NA N NA
 3614589 3614590 Pmen_1382 Pmen_1383     FALSE 0.056 193.000 0.000 NA   NA
 3614590 3614591 Pmen_1383 Pmen_1384   livG TRUE 0.999 4.000 0.967 0.020 Y NA
 3614591 3614592 Pmen_1384 Pmen_1385 livG livM TRUE 0.998 -3.000 0.574 1.000 Y NA
 3614592 3614593 Pmen_1385 Pmen_1386 livM   TRUE 0.999 -3.000 0.574 0.063 Y NA
 3614593 3614594 Pmen_1386 Pmen_1387     TRUE 0.608 118.000 0.033 1.000 Y NA
 3614595 3614596 Pmen_1388 Pmen_1389     FALSE 0.270 93.000 0.041 NA   NA
 3614597 3614598 Pmen_1390 Pmen_1391     FALSE 0.106 171.000 0.009 NA N NA
 3614598 3614599 Pmen_1391 Pmen_1392     TRUE 0.948 -3.000 0.068 1.000 N NA
 3614600 3614601 Pmen_1393 Pmen_1394     FALSE 0.188 116.000 0.013 1.000 N NA
 3614601 3614602 Pmen_1394 Pmen_1395     TRUE 0.577 72.000 0.006 1.000 Y NA
 3614602 3614603 Pmen_1395 Pmen_1396     FALSE 0.136 70.000 0.000 1.000 N NA
 3614604 3614605 Pmen_1397 Pmen_1398     FALSE 0.177 112.000 0.012 NA   NA
 3614605 3614606 Pmen_1398 Pmen_1399     TRUE 0.961 -3.000 0.109 1.000 N NA
 3614606 3614607 Pmen_1399 Pmen_1400     TRUE 0.999 -3.000 0.908 0.062 Y NA
 3614607 3614608 Pmen_1400 Pmen_1401     TRUE 0.999 3.000 0.924 0.062 Y NA
 3614608 3614609 Pmen_1401 Pmen_1402     TRUE 0.966 140.000 0.814 0.062 Y NA
 3614609 3614610 Pmen_1402 Pmen_1403     TRUE 0.999 -3.000 0.537 0.020 Y NA
 3614610 3614611 Pmen_1403 Pmen_1404     TRUE 0.999 -3.000 0.564 0.062 Y NA
 3614611 3614612 Pmen_1404 Pmen_1405   metG FALSE 0.295 120.000 0.055 1.000 N NA
 3614615 3614616 Pmen_1408 Pmen_1409 dcd   FALSE 0.152 137.000 0.007 NA   NA
 3614617 3614618 Pmen_1410 Pmen_1411 nadE   TRUE 0.969 11.000 0.033 1.000 Y NA
 3614618 3614619 Pmen_1411 Pmen_1412     TRUE 0.941 -3.000 0.053 1.000 N NA
 3614621 3614622 Pmen_1414 Pmen_1415     FALSE 0.210 172.000 0.064 NA   NA
 3614622 3614623 Pmen_1415 Pmen_1416     TRUE 0.899 8.000 0.038 NA   NA
 3614623 3614624 Pmen_1416 Pmen_1417     TRUE 0.957 6.000 0.163 NA   NA
 3614626 3614627 Pmen_1419 Pmen_1420     FALSE 0.134 67.000 0.000 NA   NA
 3614627 3614628 Pmen_1420 Pmen_1421     TRUE 0.986 5.000 0.407 NA   NA
 3614629 3614630 Pmen_1422 Pmen_1423     TRUE 0.667 132.000 0.000 0.008 Y NA
 3614630 3614631 Pmen_1423 Pmen_1424     FALSE 0.299 70.000 0.045 NA   NA
 3614631 3614632 Pmen_1424 Pmen_1425     TRUE 0.946 -7.000 0.106 NA   NA
 3614635 3614636 Pmen_1428 Pmen_1429     TRUE 0.987 -3.000 0.069 1.000 Y NA
 3614636 3614637 Pmen_1429 Pmen_1430     TRUE 0.989 -3.000 0.020 0.068 Y NA
 3614637 3614638 Pmen_1430 Pmen_1431     TRUE 0.983 0.000 0.026 1.000 Y NA
 3614638 3614639 Pmen_1431 Pmen_1432     TRUE 0.999 -3.000 0.896 0.006 Y NA
 3614639 3614640 Pmen_1432 Pmen_1433     TRUE 0.995 0.000 0.123 0.006 Y NA
 3614641 3614642 Pmen_1434 Pmen_1435     TRUE 0.846 83.000 0.667 1.000 N NA
 3614642 3614643 Pmen_1435 Pmen_1436     TRUE 0.523 35.000 0.023 1.000 N NA
 3614643 3614644 Pmen_1436 Pmen_1437     FALSE 0.186 74.000 0.006 1.000 N NA
 3614644 3614645 Pmen_1437 Pmen_1438     FALSE 0.228 195.000 0.120 1.000 N NA
 3614645 3614646 Pmen_1438 Pmen_1439     TRUE 0.729 56.000 0.047 1.000 Y NA
 3614646 3614647 Pmen_1439 Pmen_1440     FALSE 0.307 125.000 0.065 1.000 N NA
 3614647 3614648 Pmen_1440 Pmen_1441     FALSE 0.017 380.000 0.000 1.000 N NA
 3614648 3614649 Pmen_1441 Pmen_1442     TRUE 0.999 2.000 0.881 0.006 Y NA
 3614649 3614650 Pmen_1442 Pmen_1443     TRUE 0.999 -3.000 0.976 0.006 Y NA
 3614650 3614651 Pmen_1443 Pmen_1444     TRUE 0.999 -3.000 0.944 1.000 Y NA
 3614651 3614652 Pmen_1444 Pmen_1445     TRUE 0.999 -15.000 0.937 0.068 Y NA
 3614652 3614653 Pmen_1445 Pmen_1446     TRUE 0.997 13.000 0.937 1.000 Y NA
 3614653 3614654 Pmen_1446 Pmen_1447     FALSE 0.186 95.000 0.016 NA N NA
 3614654 3614655 Pmen_1447 Pmen_1448     TRUE 0.579 17.000 0.000 NA   NA
 3614655 3614656 Pmen_1448 Pmen_1449     TRUE 0.834 -3.000 0.000 NA   NA
 3614657 3614658 Pmen_1450 Pmen_1451     FALSE 0.135 86.000 0.000 1.000   NA
 3614658 3614659 Pmen_1451 Pmen_1452     FALSE 0.084 159.000 0.000 NA   NA
 3614661 3614662 Pmen_1454 Pmen_1455     TRUE 0.974 -16.000 0.286 NA   NA
 3614662 3614663 Pmen_1455 Pmen_1456     TRUE 0.996 2.000 0.857 NA   NA
 3614663 3614664 Pmen_1456 Pmen_1457     TRUE 0.637 67.000 0.277 NA   NA
 3614664 3614665 Pmen_1457 Pmen_1458     TRUE 0.770 32.000 0.128 1.000   NA
 3614666 3614667 Pmen_1459 Pmen_1460     TRUE 0.991 -3.000 0.161 1.000 Y NA
 3614668 3614669 Pmen_1461 Pmen_1462     TRUE 0.543 66.000 0.000 NA Y NA
 3614669 3614670 Pmen_1462 Pmen_1463     FALSE 0.406 47.000 0.034 NA   NA
 3614671 3614672 Pmen_1464 Pmen_1465     TRUE 0.872 -16.000 0.027 NA   NA
 3614674 3614675 Pmen_1467 Pmen_1468 algU   TRUE 0.962 31.000 0.705 NA N NA
 3614675 3614676 Pmen_1468 Pmen_1469     TRUE 0.998 9.000 0.856 NA Y NA
 3614676 3614677 Pmen_1469 Pmen_1470     TRUE 0.998 -3.000 0.609 NA Y NA
 3614677 3614678 Pmen_1470 Pmen_1471     TRUE 0.788 36.000 0.206 NA N NA
 3614678 3614679 Pmen_1471 Pmen_1472     FALSE 0.175 152.000 0.020 1.000 N NA
 3614679 3614680 Pmen_1472 Pmen_1473     TRUE 0.962 7.000 0.187 1.000 N NA
 3614680 3614681 Pmen_1473 Pmen_1474     FALSE 0.420 89.000 0.133 NA   NA
 3614681 3614682 Pmen_1474 Pmen_1475   rnc TRUE 0.924 -3.000 0.033 NA   NA
 3614682 3614683 Pmen_1475 Pmen_1476 rnc era TRUE 0.976 -7.000 0.127 0.053   NA
 3614683 3614684 Pmen_1476 Pmen_1477 era recO TRUE 0.488 58.000 0.109 1.000   NA
 3614684 3614685 Pmen_1477 Pmen_1478 recO   TRUE 0.960 -7.000 0.166 1.000 N NA
 3614688 3614689 Pmen_1481 Pmen_1482     TRUE 0.985 -3.000 0.315 NA   NA
 3614689 3614690 Pmen_1482 Pmen_1483     FALSE 0.210 101.000 0.017 1.000   NA
 3614693 3614694 Pmen_1486 Pmen_1487     TRUE 0.743 36.000 0.156 NA   NA
 3614694 3614695 Pmen_1487 Pmen_1488     TRUE 0.973 -3.000 0.188 NA   NA
 3614695 3614696 Pmen_1488 Pmen_1489     FALSE 0.050 202.000 0.000 NA   NA
 3614696 3614697 Pmen_1489 Pmen_1490     FALSE 0.046 214.000 0.000 NA   NA
 3614697 3614698 Pmen_1490 Pmen_1491     TRUE 0.958 -13.000 0.185 NA   NA
 3614698 3614699 Pmen_1491 Pmen_1492     TRUE 0.962 15.000 0.353 NA   NA
 3614700 3614701 Pmen_1493 Pmen_1494     TRUE 0.985 -3.000 0.046 1.000 Y NA
 3614702 3614703 Pmen_1495 Pmen_1496     FALSE 0.221 406.000 0.000 0.001 Y NA
 3614704 3614705 Pmen_1497 Pmen_1498     TRUE 0.945 -3.000 0.065 NA   NA
 3614706 3614707 Pmen_1499 Pmen_1500     TRUE 0.650 116.000 0.000 0.053 Y NA
 3614707 3614708 Pmen_1500 Pmen_1501     FALSE 0.427 149.000 0.179 1.000 N NA
 3614708 3614709 Pmen_1501 Pmen_1502     TRUE 0.659 45.000 0.042 0.059   NA
 3614709 3614710 Pmen_1502 Pmen_1503     FALSE 0.026 284.000 0.000 NA   NA
 3614712 3614713 Pmen_1505 Pmen_1506     FALSE 0.039 233.000 0.000 NA   NA
 3614714 3614715 Pmen_1507 Pmen_1508     FALSE 0.011 657.000 0.000 NA   NA
 3614715 3614716 Pmen_1508 Pmen_1509     TRUE 0.721 12.000 0.000 1.000   NA
 3614717 3614718 Pmen_1510 Pmen_1511     FALSE 0.120 117.000 0.000 1.000 N NA
 3614718 3614719 Pmen_1511 Pmen_1512     FALSE 0.211 49.000 0.000 1.000 N NA
 3614720 3614721 Pmen_1513 Pmen_1514     FALSE 0.150 61.000 0.000 NA   NA
 3614722 3614723 Pmen_1515 Pmen_1516     FALSE 0.137 66.000 0.000 NA   NA
 3614724 3614725 Pmen_1517 Pmen_1518     FALSE 0.338 64.000 0.000 0.068 N NA
 3614726 3614727 Pmen_1519 Pmen_1520     FALSE 0.118 92.000 0.000 NA   NA
 3614727 3614728 Pmen_1520 Pmen_1521     TRUE 0.552 19.000 0.000 NA   NA
 3614728 3614729 Pmen_1521 Pmen_1522     TRUE 0.921 14.000 0.167 1.000   NA
 3614729 3614730 Pmen_1522 Pmen_1523     TRUE 0.700 196.000 0.689 NA   NA
 3614730 3614731 Pmen_1523 Pmen_1524     FALSE 0.072 172.000 0.000 NA   NA
 3614731 3614732 Pmen_1524 Pmen_1525     FALSE 0.066 180.000 0.000 NA   NA
 3614733 3614734 Pmen_1526 Pmen_1527     FALSE 0.137 66.000 0.000 NA   NA
 3614734 3614735 Pmen_1527 Pmen_1528     FALSE 0.133 76.000 0.000 1.000 N NA
 3614736 3614737 Pmen_1529 Pmen_1530     TRUE 0.616 47.000 0.136 1.000   NA
 3614741 3614742 Pmen_1534 Pmen_1535     FALSE 0.341 81.000 0.071 NA   NA
 3614743 3614744 Pmen_1536 Pmen_1537     FALSE 0.114 119.000 0.000 NA   NA
 3614744 3614745 Pmen_1537 Pmen_1538     FALSE 0.057 191.000 0.000 NA   NA
 3614745 3614746 Pmen_1538 Pmen_1539     TRUE 0.994 3.000 0.667 NA   NA
 3614746 3614747 Pmen_1539 Pmen_1540     FALSE 0.095 152.000 0.000 NA   NA
 3614748 3614749 Pmen_1541 Pmen_1542     TRUE 0.990 2.000 0.143 NA Y NA
 3614750 3614751 Pmen_1543 Pmen_1544     TRUE 0.976 0.000 0.000 1.000 Y NA
 3614752 3614753 Pmen_1545 Pmen_1546     FALSE 0.286 72.000 0.038 1.000 N NA
 3614753 3614754 Pmen_1546 Pmen_1547     TRUE 0.960 -6.000 0.160 NA   NA
 3614755 3614756 Pmen_1548 Pmen_1549     TRUE 0.531 20.000 0.000 NA   NA
 3614756 3614757 Pmen_1549 Pmen_1550     TRUE 0.834 -3.000 0.000 NA   NA
 3614757 3614758 Pmen_1550 Pmen_1551     FALSE 0.083 161.000 0.000 NA   NA
 3614758 3614759 Pmen_1551 Pmen_1552     FALSE 0.105 139.000 0.000 NA   NA
 3614760 3614761 Pmen_1553 Pmen_1554     TRUE 0.949 22.000 0.406 NA   NA
 3614761 3614762 Pmen_1554 Pmen_1555     TRUE 0.997 -3.000 0.914 NA   NA
 3614762 3614763 Pmen_1555 Pmen_1556     TRUE 0.976 6.000 0.271 NA   NA
 3614765 3614766 Pmen_1558 Pmen_1559     TRUE 0.995 3.000 0.352 1.000 Y NA
 3614766 3614767 Pmen_1559 Pmen_1560     TRUE 0.916 46.000 0.365 0.001 N NA
 3614770 3614771 Pmen_1563 Pmen_1564     FALSE 0.375 238.000 0.000 0.021 Y NA
 3614771 3614772 Pmen_1564 Pmen_1565     TRUE 0.981 23.000 0.400 1.000 Y NA
 3614772 3614773 Pmen_1565 Pmen_1566     TRUE 0.996 0.000 0.375 1.000 Y NA
 3614773 3614774 Pmen_1566 Pmen_1567     TRUE 0.994 11.000 0.250 0.013 Y NA
 3614774 3614775 Pmen_1567 Pmen_1568     TRUE 0.982 14.000 0.091 0.013 Y NA
 3614775 3614776 Pmen_1568 Pmen_1569     TRUE 0.882 14.000 0.091 NA   NA
 3614776 3614777 Pmen_1569 Pmen_1570     TRUE 0.995 2.000 0.667 NA   NA
 3614777 3614778 Pmen_1570 Pmen_1571     TRUE 0.956 22.000 0.154 1.000 Y NA
 3614779 3614780 Pmen_1572 Pmen_1573     FALSE 0.335 156.000 0.116 1.000   NA
 3614781 3614782 Pmen_1574 Pmen_1575     FALSE 0.013 463.000 0.000 NA   NA
 3614783 3614784 Pmen_1576 Pmen_1577     TRUE 0.702 19.000 0.019 NA   NA
 3614785 3614786 Pmen_1578 Pmen_1579     FALSE 0.325 152.000 0.103 NA   NA
 3614787 3614788 Pmen_1580 Pmen_1581 fadB fadA TRUE 0.984 31.000 0.607 1.000 Y NA
 3614788 3614789 Pmen_1581 Pmen_1582 fadA   FALSE 0.346 74.000 0.070 NA   NA
 3614789 3614790 Pmen_1582 Pmen_1583     FALSE 0.163 105.000 0.007 NA   NA
 3614790 3614791 Pmen_1583 Pmen_1584     FALSE 0.134 158.000 0.011 NA   NA
 3614791 3614792 Pmen_1584 Pmen_1585     TRUE 0.687 81.000 0.348 NA   NA
 3614793 3614794 Pmen_1586 Pmen_1587     TRUE 0.939 10.000 0.122 1.000 N NA
 3614795 3614796 Pmen_1588 Pmen_1589     TRUE 0.570 48.000 0.121 NA   NA
 3614796 3614797 Pmen_1589 Pmen_1590     TRUE 0.872 11.000 0.038 NA   NA
 3614797 3614798 Pmen_1590 Pmen_1591     TRUE 0.836 11.000 0.018 1.000 N NA
 3614799 3614800 Pmen_1592 Pmen_1593     TRUE 0.891 12.000 0.071 NA   NA
 3614801 3614802 Pmen_1594 Pmen_1595     FALSE 0.022 320.000 0.000 1.000 N NA
 3614802 3614803 Pmen_1595 Pmen_1596     TRUE 0.999 4.000 0.618 0.002 Y NA
 3614803 3614804 Pmen_1596 Pmen_1597     TRUE 0.998 -7.000 0.538 0.002 Y NA
 3614804 3614805 Pmen_1597 Pmen_1598     TRUE 0.996 3.000 0.188 0.002 Y NA
 3614805 3614806 Pmen_1598 Pmen_1599     TRUE 0.997 0.000 0.240 0.002 Y NA
 3614806 3614807 Pmen_1599 Pmen_1600     TRUE 0.997 16.000 0.700 0.002 Y NA
 3614807 3614808 Pmen_1600 Pmen_1601     TRUE 0.968 4.000 0.189 1.000 N NA
 3614808 3614809 Pmen_1601 Pmen_1602     TRUE 0.965 -3.000 0.137 NA   NA
 3614809 3614810 Pmen_1602 Pmen_1603     FALSE 0.401 97.000 0.121 NA   NA
 3614811 3614812 Pmen_1604 Pmen_1605     TRUE 0.972 -3.000 0.185 NA   NA
 3614812 3614813 Pmen_1605 Pmen_1606     TRUE 0.955 20.000 0.407 NA   NA
 3614814 3614815 Pmen_1607 Pmen_1608     TRUE 0.946 -7.000 0.025 0.081 N NA
 3614815 3614816 Pmen_1608 Pmen_1609     TRUE 0.996 0.000 0.620 0.081 N NA
 3614818 3614819 Pmen_1611 Pmen_1612     FALSE 0.311 73.000 0.045 1.000   NA
 3614819 3614820 Pmen_1612 Pmen_1613     TRUE 0.999 -3.000 0.746 0.081 Y NA
 3614820 3614821 Pmen_1613 Pmen_1614   lpxK TRUE 0.957 1.000 0.096 1.000 N NA
 3614821 3614822 Pmen_1614 Pmen_1615 lpxK   TRUE 0.908 23.000 0.263 NA   NA
 3614822 3614823 Pmen_1615 Pmen_1616     TRUE 0.981 1.000 0.265 NA   NA
 3614823 3614824 Pmen_1616 Pmen_1617     TRUE 0.942 0.000 0.050 1.000 N NA
 3614824 3614825 Pmen_1617 Pmen_1618   murB TRUE 0.940 -3.000 0.050 1.000 N NA
 3614827 3614828 Pmen_1620 Pmen_1621     TRUE 0.986 -7.000 0.389 1.000   NA
 3614828 3614829 Pmen_1621 Pmen_1622     TRUE 0.851 -10.000 0.006 1.000   NA
 3614831 3614832 Pmen_1624 Pmen_1625   rpmF TRUE 0.983 14.000 0.599 NA   NA
 3614832 3614833 Pmen_1625 Pmen_1626 rpmF   TRUE 0.916 34.000 0.418 1.000 N NA
 3614833 3614834 Pmen_1626 Pmen_1627     TRUE 0.823 126.000 0.106 0.003 Y NA
 3614834 3614835 Pmen_1627 Pmen_1628   fabG TRUE 0.990 24.000 0.432 0.003 Y NA
 3614835 3614836 Pmen_1628 Pmen_1629 fabG   TRUE 0.784 231.000 0.321 0.003 Y NA
 3614836 3614837 Pmen_1629 Pmen_1630     TRUE 0.862 111.000 0.346 1.000 Y NA
 3614837 3614838 Pmen_1630 Pmen_1631     TRUE 0.986 0.000 0.187 0.042 N NA
 3614838 3614839 Pmen_1631 Pmen_1632     TRUE 0.969 4.000 0.204 NA   NA
 3614839 3614840 Pmen_1632 Pmen_1633     TRUE 0.960 10.000 0.209 NA   NA
 3614840 3614841 Pmen_1633 Pmen_1634     TRUE 0.981 -7.000 0.211 0.097 N NA
 3614841 3614842 Pmen_1634 Pmen_1635     TRUE 0.678 126.000 0.382 NA N NA
 3614842 3614843 Pmen_1635 Pmen_1636     TRUE 0.676 35.000 0.089 NA N NA
 3614845 3614846 Pmen_1638 Pmen_1639     TRUE 0.662 134.000 0.357 1.000 N NA
 3614846 3614847 Pmen_1639 Pmen_1640     FALSE 0.133 231.000 0.000 0.042   NA
 3614847 3614848 Pmen_1640 Pmen_1641     FALSE 0.360 74.000 0.077 NA   NA
 3614848 3614849 Pmen_1641 Pmen_1642     FALSE 0.233 161.000 0.062 NA   NA
 3614849 3614850 Pmen_1642 Pmen_1643     FALSE 0.140 65.000 0.000 NA   NA
 3614850 3614851 Pmen_1643 Pmen_1644     TRUE 0.852 -3.000 0.000 1.000   NA
 3614854 3614855 Pmen_1647 Pmen_1648     FALSE 0.054 196.000 0.000 NA   NA
 3614858 3614859 Pmen_1651 Pmen_1652     FALSE 0.052 198.000 0.000 NA   NA
 3614863 3614864 Pmen_1656 Pmen_1657     FALSE 0.092 154.000 0.000 NA   NA
 3614866 3614867 Pmen_1659 Pmen_1660     FALSE 0.394 112.000 0.121 NA   NA
 3614868 3614869 Pmen_1661 Pmen_1662     TRUE 0.803 23.000 0.102 NA N NA
 3614870 3614871 Pmen_1663 Pmen_1664     TRUE 0.957 17.000 0.088 NA Y NA
 3614871 3614872 Pmen_1664 Pmen_1665     FALSE 0.164 88.000 0.008 NA N NA
 3614872 3614873 Pmen_1665 Pmen_R0023     FALSE 0.114 119.000 0.000 NA   NA
 3614873 3614874 Pmen_R0023 Pmen_1666     FALSE 0.014 427.000 0.000 NA   NA
 3614875 3614876 Pmen_1667 Pmen_1668   algL TRUE 0.975 15.000 0.500 NA   NA
 3614876 3614877 Pmen_1668 Pmen_1669 algL   TRUE 0.994 -9.000 0.750 NA   NA
 3614877 3614878 Pmen_1669 Pmen_1670     TRUE 0.960 35.000 0.750 NA   NA
 3614878 3614879 Pmen_1670 Pmen_1671     TRUE 0.986 16.000 0.750 NA   NA
 3614879 3614880 Pmen_1671 Pmen_1672     TRUE 0.992 11.000 0.750 NA   NA
 3614880 3614881 Pmen_1672 Pmen_1673     TRUE 0.990 18.000 1.000 NA   NA
 3614881 3614882 Pmen_1673 Pmen_1674     TRUE 0.834 -3.000 0.000 NA   NA
 3614882 3614883 Pmen_1674 Pmen_1675     TRUE 0.770 8.000 0.000 NA   NA
 3614883 3614884 Pmen_1675 Pmen_1676     TRUE 0.990 18.000 1.000 NA   NA
 3614884 3614885 Pmen_1676 Pmen_1677     TRUE 0.751 61.000 0.100 NA Y NA
 3614885 3614886 Pmen_1677 Pmen_1678     TRUE 0.697 115.000 0.100 1.000 Y NA
 3614886 3614887 Pmen_1678 Pmen_1679     FALSE 0.009 905.000 0.000 NA N NA
 3614887 3614888 Pmen_1679 Pmen_1680     TRUE 0.995 2.000 0.750 NA N NA
 3614888 3614889 Pmen_1680 Pmen_1681     TRUE 0.793 6.000 0.000 1.000 N NA
 3614889 3614890 Pmen_1681 Pmen_1682     FALSE 0.307 255.000 0.000 0.073 Y NA
 3614891 3614892 Pmen_1683 Pmen_1684     FALSE 0.074 197.000 0.007 NA N NA
 3614894 3614895 Pmen_1686 Pmen_1687     TRUE 0.769 -12.000 0.000 NA   NA
 3614896 3614897 Pmen_1688 Pmen_1689     TRUE 0.864 -7.000 0.007 1.000   NA
 3614897 3614898 Pmen_1689 Pmen_1690     FALSE 0.166 88.000 0.005 NA   NA
 3614899 3614900 Pmen_1691 Pmen_1692     TRUE 0.878 12.000 0.056 NA   NA
 3614900 3614901 Pmen_1692 Pmen_1693     FALSE 0.059 324.000 0.049 NA   NA
 3614901 3614902 Pmen_1693 Pmen_1694     TRUE 0.921 3.000 0.038 NA   NA
 3614902 3614903 Pmen_1694 Pmen_1695     TRUE 0.986 -7.000 0.407 1.000 N NA
 3614903 3614904 Pmen_1695 Pmen_1696     FALSE 0.019 357.000 0.000 1.000 N NA
 3614904 3614905 Pmen_1696 Pmen_1697     TRUE 0.917 5.000 0.044 1.000 N NA
 3614905 3614906 Pmen_1697 Pmen_1698     TRUE 0.552 216.000 0.195 1.000 Y NA
 3614906 3614907 Pmen_1698 Pmen_1699     TRUE 0.865 67.000 0.495 0.041 N NA
 3614907 3614908 Pmen_1699 Pmen_1700     FALSE 0.233 122.000 0.027 1.000   NA
 3614908 3614909 Pmen_1700 Pmen_1701     FALSE 0.028 291.000 0.000 1.000   NA
 3614912 3614913 Pmen_1704 Pmen_1705     FALSE 0.128 182.000 0.025 NA   NA
 3614913 3614914 Pmen_1705 Pmen_1706     TRUE 0.747 10.000 0.000 NA   NA
 3614914 3614915 Pmen_1706 Pmen_1707     FALSE 0.243 44.000 0.000 NA   NA
 3614915 3614916 Pmen_1707 Pmen_1708     FALSE 0.142 60.000 0.000 NA N NA
 3614917 3614918 Pmen_1709 Pmen_1710   nfrB TRUE 0.989 -3.000 0.091 1.000 Y NA
 3614918 3614919 Pmen_1710 Pmen_1711 nfrB   TRUE 0.970 -3.000 0.159 1.000   NA
 3614919 3614920 Pmen_1711 Pmen_1712     TRUE 0.992 0.000 0.500 NA   NA
 3614921 3614922 Pmen_1713 Pmen_1714     FALSE 0.124 97.000 0.000 1.000 N NA
 3614922 3614923 Pmen_1714 Pmen_R0024     FALSE 0.106 137.000 0.000 NA   NA
 3614923 3614924 Pmen_R0024 Pmen_R0025     FALSE 0.114 116.000 0.000 NA   NA
 3614926 3614927 Pmen_1716 Pmen_1717     FALSE 0.114 115.000 0.000 NA   NA
 3614927 3614928 Pmen_1717 Pmen_1718     TRUE 0.937 -7.000 0.080 NA   NA
 3614928 3614929 Pmen_1718 Pmen_1719     TRUE 0.805 21.000 0.080 NA   NA
 3614929 3614930 Pmen_1719 Pmen_1720     TRUE 0.993 13.000 1.000 NA   NA
 3614932 3614933 Pmen_1722 Pmen_1723     TRUE 0.569 72.000 0.222 1.000 N NA
 3614933 3614934 Pmen_1723 Pmen_1724     TRUE 0.993 11.000 0.400 1.000 Y NA
 3614934 3614935 Pmen_1724 Pmen_1725     FALSE 0.191 268.000 0.000 1.000 Y NA
 3614937 3614938 Pmen_1727 Pmen_1728     TRUE 0.954 5.000 0.135 NA   NA
 3614938 3614939 Pmen_1728 Pmen_1729     TRUE 0.580 28.000 0.020 NA   NA
 3614939 3614940 Pmen_1729 Pmen_1730     TRUE 0.758 10.000 0.000 1.000 N NA
 3614941 3614942 Pmen_1731 Pmen_1732     TRUE 0.993 -3.000 0.222 1.000 Y NA
 3614942 3614943 Pmen_1732 Pmen_1733   cysM FALSE 0.123 100.000 0.000 1.000 N NA
 3614943 3614944 Pmen_1733 Pmen_1734 cysM rumA TRUE 0.935 0.000 0.039 1.000 N NA
 3614944 3614945 Pmen_1734 Pmen_1735 rumA   FALSE 0.271 128.000 0.047 1.000 N NA
 3614945 3614946 Pmen_1735 Pmen_1736   mazG TRUE 0.843 13.000 0.035 1.000   NA
 3614946 3614947 Pmen_1736 Pmen_1737 mazG   FALSE 0.111 177.000 0.013 NA   NA
 3614948 3614949 Pmen_1738 Pmen_1739     FALSE 0.101 146.000 0.000 NA   NA
 3614950 3614951 Pmen_1740 Pmen_1741     FALSE 0.322 49.000 0.018 NA   NA
 3614952 3614953 Pmen_R0026 Pmen_1742     FALSE 0.107 134.000 0.000 NA   NA
 3614953 3614954 Pmen_1742 Pmen_1743   mobA FALSE 0.181 68.000 0.005 NA   NA
 3614955 3614956 Pmen_1744 Pmen_1745     TRUE 0.994 -3.000 0.073 0.002 Y NA
 3614956 3614957 Pmen_1745 Pmen_1746     FALSE 0.089 150.000 0.000 NA N NA
 3614957 3614958 Pmen_1746 Pmen_1747     TRUE 0.962 85.000 0.909 NA Y NA
 3614958 3614959 Pmen_1747 Pmen_1748     TRUE 0.974 8.000 0.273 NA   NA
 3614959 3614960 Pmen_1748 Pmen_1749     TRUE 0.776 7.000 0.000 NA   NA
 3614960 3614961 Pmen_1749 Pmen_1750     FALSE 0.014 429.000 0.000 NA   NA
 3614961 3614962 Pmen_1750 Pmen_1751     TRUE 0.993 0.000 0.054 0.007 Y NA
 3614962 3614963 Pmen_1751 Pmen_1752     TRUE 0.950 -3.000 0.071 1.000 N NA
 3614963 3614964 Pmen_1752 Pmen_1753   cobD TRUE 0.929 4.000 0.053 1.000 N NA
 3614964 3614965 Pmen_1753 Pmen_1754 cobD   TRUE 0.994 -7.000 0.463 0.007 N NA
 3614965 3614966 Pmen_1754 Pmen_1755     TRUE 0.973 0.000 0.033 0.007 N NA
 3614966 3614967 Pmen_1755 Pmen_1756   cobU TRUE 0.707 69.000 0.079 1.000 Y NA
 3614967 3614968 Pmen_1756 Pmen_1757 cobU cobT TRUE 0.990 -3.000 0.138 1.000 Y NA
 3614968 3614969 Pmen_1757 Pmen_1758 cobT   TRUE 0.957 0.000 0.090 1.000 N NA
 3614969 3614970 Pmen_1758 Pmen_1759   cobS TRUE 0.913 -3.000 0.021 1.000 N NA
 3614970 3614971 Pmen_1759 Pmen_1760 cobS   FALSE 0.192 74.000 0.008 1.000 N NA
 3614971 3614972 Pmen_1760 Pmen_1761     TRUE 0.662 53.000 0.220 1.000 N NA
 3614972 3614973 Pmen_1761 Pmen_1762     FALSE 0.159 185.000 0.042 1.000 N NA
 3614973 3614974 Pmen_1762 Pmen_1763     FALSE 0.127 123.000 0.000 1.000   NA
 3614974 3614975 Pmen_1763 Pmen_1764     TRUE 0.939 43.000 0.714 1.000   NA
 3614975 3614976 Pmen_1764 Pmen_1765     TRUE 0.975 13.000 0.429 1.000 N NA
 3614977 3614978 Pmen_1766 Pmen_1767     FALSE 0.147 65.000 0.000 1.000 N NA
 3614978 3614979 Pmen_1767 Pmen_1768     TRUE 0.437 144.000 0.182 NA   NA
 3614979 3614980 Pmen_1768 Pmen_1769     FALSE 0.053 197.000 0.000 NA   NA
 3614981 3614982 Pmen_1770 Pmen_1771     FALSE 0.074 175.000 0.000 1.000 N NA
 3614984 3614985 Pmen_1773 Pmen_1774     TRUE 0.949 -3.000 0.073 NA   NA
 3614985 3614986 Pmen_1774 Pmen_1775     TRUE 0.929 4.000 0.056 NA   NA
 3614986 3614987 Pmen_1775 Pmen_1776     FALSE 0.183 88.000 0.011 NA   NA
 3614987 3614988 Pmen_1776 Pmen_1777     FALSE 0.275 68.000 0.034 NA   NA
 3614991 3614992 Pmen_1780 Pmen_1781     FALSE 0.193 106.000 0.020 NA N NA
 3614993 3614994 Pmen_1782 Pmen_1783     TRUE 0.454 57.000 0.091 NA   NA
 3614994 3614995 Pmen_1783 Pmen_1784     TRUE 0.873 5.000 0.011 1.000   NA
 3614995 3614996 Pmen_1784 Pmen_1785     TRUE 0.846 14.000 0.053 NA   NA
 3614996 3614997 Pmen_1785 Pmen_1786     FALSE 0.099 147.000 0.000 NA   NA
 3614998 3614999 Pmen_1787 Pmen_1788     TRUE 0.593 177.000 0.431 NA   NA
 3614999 3615000 Pmen_1788 Pmen_1789     FALSE 0.199 160.000 0.041 NA   NA
 3615004 3615005 Pmen_1793 Pmen_1794     FALSE 0.063 194.000 0.000 1.000   NA
 3615005 3615006 Pmen_1794 Pmen_1795     FALSE 0.120 106.000 0.000 1.000 N NA
 3615006 3615007 Pmen_1795 Pmen_1796     FALSE 0.304 40.000 0.000 1.000   NA
 3615007 3615008 Pmen_1796 Pmen_1797     FALSE 0.142 79.000 0.000 1.000   NA
 3615009 3615010 Pmen_1798 Pmen_1799     TRUE 0.730 10.000 0.000 NA N NA
 3615010 3615011 Pmen_1799 Pmen_1800     TRUE 0.498 120.000 0.200 1.000 N NA
 3615011 3615012 Pmen_1800 Pmen_1801     FALSE 0.130 187.000 0.031 NA   NA
 3615013 3615014 Pmen_1802 Pmen_1803     TRUE 0.985 13.000 0.447 0.066 N NA
 3615014 3615015 Pmen_1803 Pmen_1804     TRUE 0.579 34.000 0.032 1.000 N NA
 3615015 3615016 Pmen_1804 Pmen_1805     FALSE 0.019 348.000 0.000 NA   NA
 3615017 3615018 Pmen_1806 Pmen_1807     FALSE 0.112 123.000 0.000 NA   NA
 3615019 3615020 Pmen_1808 Pmen_1809     FALSE 0.420 186.000 0.273 NA   NA
 3615020 3615021 Pmen_1809 Pmen_1810     FALSE 0.135 163.000 0.015 NA   NA
 3615021 3615022 Pmen_1810 Pmen_1811     TRUE 0.484 50.000 0.077 NA   NA
 3615023 3615024 Pmen_1812 Pmen_1813     FALSE 0.178 82.000 0.005 1.000 N NA
 3615024 3615025 Pmen_1813 Pmen_1814     FALSE 0.105 147.000 0.000 1.000 N NA
 3615025 3615026 Pmen_1814 Pmen_1815     FALSE 0.085 306.000 0.080 1.000 N NA
 3615029 3615030 Pmen_1818 Pmen_1819     TRUE 0.888 -3.000 0.009 NA   NA
 3615030 3615031 Pmen_1819 Pmen_1820     FALSE 0.076 217.000 0.009 1.000   NA
 3615032 3615033 Pmen_1821 Pmen_1822     TRUE 0.982 -3.000 0.255 1.000   NA
 3615034 3615035 Pmen_1823 Pmen_1824     FALSE 0.074 266.000 0.038 NA   NA
 3615038 3615039 Pmen_1827 Pmen_1828     FALSE 0.249 58.000 0.014 NA   NA
 3615040 3615041 Pmen_1829 Pmen_1830     TRUE 0.697 66.000 0.333 NA   NA
 3615041 3615042 Pmen_1830 Pmen_1831     TRUE 0.511 141.000 0.227 NA   NA
 3615042 3615043 Pmen_1831 Pmen_1832     TRUE 0.987 4.000 0.409 NA   NA
 3615043 3615044 Pmen_1832 Pmen_1833     TRUE 0.529 39.000 0.043 NA   NA
 3615045 3615046 Pmen_1834 Pmen_1835     TRUE 0.972 -28.000 0.281 NA   NA
 3615048 3615049 Pmen_1837 Pmen_1838     TRUE 0.858 14.000 0.065 NA   NA
 3615049 3615050 Pmen_1838 Pmen_1839     TRUE 0.953 -3.000 0.083 NA   NA
 3615050 3615051 Pmen_1839 Pmen_1840     FALSE 0.355 97.000 0.087 NA   NA
 3615051 3615052 Pmen_1840 Pmen_1841     FALSE 0.130 181.000 0.026 NA   NA
 3615053 3615054 Pmen_1842 Pmen_1843     FALSE 0.039 240.000 0.000 1.000 N NA
 3615054 3615055 Pmen_1843 Pmen_1844     TRUE 0.866 27.000 0.098 0.066   NA
 3615055 3615056 Pmen_1844 Pmen_1845     TRUE 0.983 0.000 0.259 1.000   NA
 3615056 3615057 Pmen_1845 Pmen_1846     FALSE 0.375 122.000 0.104 1.000 N NA
 3615058 3615059 Pmen_1847 Pmen_1848 mtnA   FALSE 0.064 226.000 0.007 1.000 N NA
 3615059 3615060 Pmen_1848 Pmen_1849     FALSE 0.316 119.000 0.067 1.000 N NA
 3615060 3615061 Pmen_1849 Pmen_1850     TRUE 0.989 2.000 0.121 1.000 Y NA
 3615061 3615062 Pmen_1850 Pmen_1851     TRUE 0.705 88.000 0.098 1.000 Y NA
 3615062 3615063 Pmen_1851 Pmen_1852     TRUE 0.983 -3.000 0.029 1.000 Y NA
 3615063 3615064 Pmen_1852 Pmen_1853   cmk TRUE 0.976 -3.000 0.209 1.000 N NA
 3615064 3615065 Pmen_1853 Pmen_1854 cmk rpsA TRUE 0.562 148.000 0.281 1.000 N NA
 3615065 3615066 Pmen_1854 Pmen_1855 rpsA ihfB FALSE 0.153 412.000 0.292 1.000 N NA
 3615066 3615067 Pmen_1855 Pmen_1856 ihfB   FALSE 0.046 220.000 0.000 1.000 N NA
 3615067 3615068 Pmen_1856 Pmen_1857     TRUE 0.513 22.000 0.000 1.000 N NA
 3615068 3615069 Pmen_1857 Pmen_1858     TRUE 0.557 62.000 0.060 0.059   NA
 3615069 3615070 Pmen_1858 Pmen_1859     TRUE 0.813 5.000 0.000 1.000   NA
 3615070 3615071 Pmen_1859 Pmen_1860     TRUE 0.979 -3.000 0.006 1.000 Y NA
 3615071 3615072 Pmen_1860 Pmen_1861     FALSE 0.389 32.000 0.000 1.000 N NA
 3615072 3615073 Pmen_1861 Pmen_1862     TRUE 0.794 36.000 0.000 1.000 Y NA
 3615073 3615074 Pmen_1862 Pmen_1863     TRUE 0.845 2.000 0.000 1.000   NA
 3615076 3615077 Pmen_1865 Pmen_1866     FALSE 0.327 36.000 0.000 NA   NA
 3615079 3615080 Pmen_1868 Pmen_1869     TRUE 0.971 3.000 0.000 NA Y NA
 3615080 3615081 Pmen_1869 Pmen_1870     TRUE 0.991 2.000 0.157 1.000 Y NA
 3615081 3615082 Pmen_1870 Pmen_1871     FALSE 0.341 35.000 0.000 NA   NA
 3615082 3615083 Pmen_1871 Pmen_1872     TRUE 0.838 0.000 0.000 NA   NA
 3615083 3615084 Pmen_1872 Pmen_1873     TRUE 0.958 -7.000 0.148 1.000   NA
 3615084 3615085 Pmen_1873 Pmen_1874     TRUE 0.978 3.000 0.014 1.000 Y NA
 3615085 3615086 Pmen_1874 Pmen_1875     TRUE 0.994 -3.000 0.250 1.000 Y NA
 3615086 3615087 Pmen_1875 Pmen_1876     TRUE 0.916 -3.000 0.020 1.000   NA
 3615087 3615088 Pmen_1876 Pmen_1877     FALSE 0.097 158.000 0.000 1.000   NA
 3615088 3615089 Pmen_1877 Pmen_1878     FALSE 0.120 110.000 0.000 1.000 N NA
 3615089 3615090 Pmen_1878 Pmen_1879     FALSE 0.189 90.000 0.012 1.000 N NA
 3615091 3615092 Pmen_R0027 Pmen_1880     FALSE 0.110 127.000 0.000 NA   NA
 3615092 3615093 Pmen_1880 Pmen_1881     TRUE 0.796 37.000 0.219 NA   NA
 3615094 3615095 Pmen_1882 Pmen_1883     FALSE 0.317 86.000 0.055 1.000   NA
 3615095 3615096 Pmen_1883 Pmen_1884     TRUE 0.922 -3.000 0.026 1.000   NA
 3615096 3615097 Pmen_1884 Pmen_1885     FALSE 0.131 68.000 0.000 NA   NA
 3615097 3615098 Pmen_1885 Pmen_1886     TRUE 0.747 -39.000 0.000 NA   NA
 3615099 3615100 Pmen_1887 Pmen_1888     TRUE 0.993 5.000 0.275 1.000 Y NA
 3615100 3615101 Pmen_1888 Pmen_1889     FALSE 0.116 243.000 0.000 0.045 N NA
 3615102 3615103 Pmen_1890 Pmen_1891     TRUE 0.923 -16.000 0.074 1.000 N NA
 3615103 3615104 Pmen_1891 Pmen_1892     TRUE 0.991 0.000 0.047 0.066 Y NA
 3615104 3615105 Pmen_1892 Pmen_1893     FALSE 0.029 267.000 0.000 NA   NA
 3615105 3615106 Pmen_1893 Pmen_1894     FALSE 0.115 102.000 0.000 NA   NA
 3615107 3615108 Pmen_1895 Pmen_1896     TRUE 0.437 26.000 0.000 NA   NA
 3615108 3615109 Pmen_1896 Pmen_1897     TRUE 0.707 26.000 0.000 0.066 N NA
 3615109 3615110 Pmen_1897 Pmen_1898     FALSE 0.036 243.000 0.000 NA   NA
 3615110 3615111 Pmen_1898 Pmen_1899     FALSE 0.118 94.000 0.000 NA   NA
 3615111 3615112 Pmen_1899 Pmen_1900     FALSE 0.013 437.000 0.000 NA   NA
 3615112 3615113 Pmen_1900 Pmen_1901     FALSE 0.120 86.000 0.000 NA   NA
 3615113 3615114 Pmen_1901 Pmen_1902     FALSE 0.057 192.000 0.000 NA   NA
 3615114 3615115 Pmen_1902 Pmen_1903   acnA FALSE 0.100 177.000 0.004 1.000 N NA
 3615116 3615117 Pmen_1904 Pmen_1905     FALSE 0.120 217.000 0.047 NA   NA
 3615118 3615119 Pmen_1906 Pmen_1907     TRUE 0.527 42.000 0.054 NA   NA
 3615120 3615121 Pmen_1908 Pmen_1909     FALSE 0.081 166.000 0.000 1.000 N NA
 3615121 3615122 Pmen_1909 Pmen_1910     TRUE 0.934 -3.000 0.041 1.000 N NA
 3615124 3615125 Pmen_1912 Pmen_1913     TRUE 0.905 -3.000 0.019 NA   NA
 3615126 3615127 Pmen_1914 Pmen_1915     TRUE 0.709 53.000 0.267 NA   NA
 3615128 3615129 Pmen_R0028 Pmen_R0029     TRUE 0.598 16.000 0.000 NA   NA
 3615129 3615130 Pmen_R0029 Pmen_R0030     FALSE 0.225 46.000 0.000 NA   NA
 3615130 3615131 Pmen_R0030 Pmen_R0031     TRUE 0.616 15.000 0.000 NA   NA
 3615132 3615133 Pmen_1916 Pmen_1917   fadE FALSE 0.356 101.000 0.090 NA   NA
 3615134 3615135 Pmen_1918 Pmen_1919     FALSE 0.090 155.000 0.000 NA   NA
 3615135 3615136 Pmen_1919 Pmen_1920     TRUE 0.999 -3.000 0.688 0.094 Y NA
 3615136 3615137 Pmen_1920 Pmen_1921     FALSE 0.125 92.000 0.000 1.000 N NA
 3615137 3615138 Pmen_1921 Pmen_1922     TRUE 0.997 -3.000 0.900 NA N NA
 3615138 3615139 Pmen_1922 Pmen_1923   queF FALSE 0.071 173.000 0.000 NA   NA
 3615140 3615141 Pmen_1924 Pmen_1925     FALSE 0.114 119.000 0.000 NA   NA
 3615141 3615142 Pmen_1925 Pmen_1926     FALSE 0.145 63.000 0.000 NA   NA
 3615145 3615146 Pmen_1929 Pmen_1930     TRUE 0.996 -3.000 0.408 NA Y NA
 3615149 3615150 Pmen_1933 Pmen_1934   dnaE2 FALSE 0.120 106.000 0.000 1.000 N NA
 3615150 3615151 Pmen_1934 Pmen_1935 dnaE2   TRUE 0.997 -3.000 0.500 1.000 Y NA
 3615151 3615152 Pmen_1935 Pmen_1936     TRUE 0.995 2.000 0.667 NA   NA
 3615153 3615154 Pmen_1937 Pmen_1938     FALSE 0.029 289.000 0.000 1.000   NA
 3615154 3615155 Pmen_1938 Pmen_1939     FALSE 0.117 342.000 0.182 NA   NA
 3615155 3615156 Pmen_1939 Pmen_1940     TRUE 0.790 -7.000 0.000 NA   NA
 3615156 3615157 Pmen_1940 Pmen_1941     TRUE 0.744 -1902.000 0.000 NA   NA
 3615158 3615159 Pmen_1942 Pmen_1943     FALSE 0.270 44.000 0.000 1.000   NA
 3615159 3615160 Pmen_1943 Pmen_1944     TRUE 0.830 24.000 0.146 NA   NA
 3615160 3615161 Pmen_1944 Pmen_1945     FALSE 0.308 129.000 0.070 NA   NA
 3615161 3615162 Pmen_1945 Pmen_1946     TRUE 0.999 -3.000 0.635 0.094 Y NA
 3615162 3615163 Pmen_1946 Pmen_1947     TRUE 0.975 -3.000 0.189 1.000   NA
 3615163 3615164 Pmen_1947 Pmen_1948     TRUE 0.827 82.000 0.615 NA   NA
 3615165 3615166 Pmen_1949 Pmen_1950     TRUE 0.992 1.000 0.500 NA   NA
 3615166 3615167 Pmen_1950 Pmen_1951     TRUE 0.999 -3.000 0.545 0.027 Y NA
 3615167 3615168 Pmen_1951 Pmen_1952     FALSE 0.070 175.000 0.000 NA   NA
 3615168 3615169 Pmen_1952 Pmen_1953     FALSE 0.324 143.000 0.089 NA   NA
 3615170 3615171 Pmen_1954 Pmen_1955     TRUE 0.986 -3.000 0.317 NA   NA
 3615171 3615172 Pmen_1955 Pmen_1956     FALSE 0.035 244.000 0.000 NA   NA
 3615172 3615173 Pmen_1956 Pmen_1957     TRUE 0.434 102.000 0.154 NA   NA
 3615174 3615175 Pmen_1958 Pmen_1959     TRUE 0.848 149.000 0.786 1.000   NA
 3615175 3615176 Pmen_1959 Pmen_1960     TRUE 0.868 22.000 0.175 NA   NA
 3615176 3615177 Pmen_1960 Pmen_1961     TRUE 0.921 57.000 0.857 NA   NA
 3615179 3615180 Pmen_1963 Pmen_1964     FALSE 0.058 333.000 0.048 1.000 N NA
 3615180 3615181 Pmen_1964 Pmen_1965   pqqA FALSE 0.014 483.000 0.000 1.000   NA
 3615181 3615182 Pmen_1965 Pmen_1966 pqqA   TRUE 0.661 48.000 0.028 0.002   NA
 3615182 3615183 Pmen_1966 Pmen_1967     TRUE 0.990 24.000 0.825 0.002   NA
 3615183 3615184 Pmen_1967 Pmen_1968     TRUE 0.991 -3.000 0.246 0.002   NA
 3615184 3615185 Pmen_1968 Pmen_1969     TRUE 0.983 -28.000 0.211 0.002   NA
 3615185 3615186 Pmen_1969 Pmen_1970     TRUE 0.937 -12.000 0.088 1.000   NA
 3615186 3615187 Pmen_1970 Pmen_1971     FALSE 0.289 78.000 0.041 1.000 N NA
 3615187 3615188 Pmen_1971 Pmen_1972     TRUE 0.910 -16.000 0.054 1.000 N NA
 3615188 3615189 Pmen_1972 Pmen_1973     FALSE 0.124 81.000 0.000 NA   NA
 3615189 3615190 Pmen_1973 Pmen_1974     TRUE 0.760 -15.000 0.000 NA   NA
 3615192 3615193 Pmen_R0032 Pmen_1976   thrS FALSE 0.030 265.000 0.000 NA   NA
 3615193 3615194 Pmen_1976 Pmen_1977 thrS infC TRUE 0.970 18.000 0.186 1.000 Y NA
 3615194 3615195 Pmen_1977 Pmen_1978 infC rpmI TRUE 0.951 61.000 0.652 1.000 Y NA
 3615195 3615196 Pmen_1978 Pmen_1979 rpmI rplT TRUE 0.996 30.000 0.928 0.011 Y NA
 3615196 3615197 Pmen_1979 Pmen_1980 rplT pheS TRUE 0.782 97.000 0.202 1.000 Y NA
 3615197 3615198 Pmen_1980 Pmen_1981 pheS pheT TRUE 0.983 45.000 0.574 0.001 Y NA
 3615198 3615199 Pmen_1981 Pmen_1982 pheT ihfA TRUE 0.971 4.000 0.208 1.000 N NA
 3615199 3615200 Pmen_1982 Pmen_1983 ihfA   TRUE 0.988 -19.000 0.535 1.000 N NA
 3615200 3615201 Pmen_1983 Pmen_R0033     FALSE 0.127 76.000 0.000 NA   NA
 3615201 3615202 Pmen_R0033 Pmen_1984     FALSE 0.025 288.000 0.000 NA   NA
 3615202 3615203 Pmen_1984 Pmen_1985     TRUE 0.512 99.000 0.000 1.000 Y NA
 3615203 3615204 Pmen_1985 Pmen_1986     TRUE 0.999 -3.000 0.542 0.001 Y NA
 3615204 3615205 Pmen_1986 Pmen_1987     TRUE 0.999 -3.000 0.688 0.001 Y NA
 3615205 3615206 Pmen_1987 Pmen_R0034     FALSE 0.011 567.000 0.000 NA   NA
 3615206 3615207 Pmen_R0034 Pmen_R0035     FALSE 0.127 74.000 0.000 NA   NA
 3615207 3615208 Pmen_R0035 Pmen_R0036     TRUE 0.481 23.000 0.000 NA   NA
 3615208 3615209 Pmen_R0036 Pmen_R0037     FALSE 0.033 254.000 0.000 NA   NA
 3615209 3615210 Pmen_R0037 Pmen_R0038     FALSE 0.098 148.000 0.000 NA   NA
 3615211 3615212 Pmen_1988 Pmen_1989     TRUE 0.531 20.000 0.000 NA   NA
 3615212 3615213 Pmen_1989 Pmen_1990     FALSE 0.118 97.000 0.000 NA   NA
 3615213 3615214 Pmen_1990 Pmen_1991     FALSE 0.173 55.000 0.000 NA   NA
 3615214 3615215 Pmen_1991 Pmen_1992     FALSE 0.381 51.000 0.037 NA   NA
 3615216 3615217 Pmen_1993 Pmen_1994     TRUE 0.997 0.000 0.619 0.002   NA
 3615217 3615218 Pmen_1994 Pmen_1995     TRUE 0.996 0.000 0.762 1.000   NA
 3615218 3615219 Pmen_1995 Pmen_1996     TRUE 0.999 -3.000 0.882 1.000 Y NA
 3615220 3615221 Pmen_1997 Pmen_1998     FALSE 0.101 146.000 0.000 NA   NA
 3615222 3615223 Pmen_1999 Pmen_2000     FALSE 0.257 119.000 0.034 1.000   NA
 3615226 3615227 Pmen_2003 Pmen_2004     FALSE 0.012 509.000 0.000 NA   NA
 3615227 3615228 Pmen_2004 Pmen_2005     TRUE 0.692 12.000 0.000 NA   NA
 3615230 3615231 Pmen_2007 Pmen_2008     TRUE 0.991 0.000 0.150 1.000 Y NA
 3615231 3615232 Pmen_2008 Pmen_2009     TRUE 0.993 -3.000 0.100 0.078 Y NA
 3615232 3615233 Pmen_2009 Pmen_2010     TRUE 0.910 72.000 0.469 1.000 Y NA
 3615233 3615234 Pmen_2010 Pmen_2011     FALSE 0.311 122.000 0.000 0.040 N NA
 3615234 3615235 Pmen_2011 Pmen_2012     TRUE 0.842 -3.000 0.000 1.000 N NA
 3615235 3615236 Pmen_2012 Pmen_2013     TRUE 0.663 20.000 0.013 NA   NA
 3615237 3615238 Pmen_2014 Pmen_2015     FALSE 0.114 131.000 0.000 1.000 N NA
 3615242 3615243 Pmen_2019 Pmen_2020     TRUE 0.996 -3.000 0.783 NA   NA
 3615246 3615247 Pmen_2023 Pmen_2024     TRUE 0.498 22.000 0.000 NA   NA
 3615247 3615248 Pmen_2024 Pmen_2025     FALSE 0.141 80.000 0.000 1.000   NA
 3615250 3615251 Pmen_2027 Pmen_2028     TRUE 0.890 -7.000 0.024 1.000 N NA
 3615251 3615252 Pmen_2028 Pmen_2029     FALSE 0.373 138.000 0.028 0.065 N NA
 3615252 3615253 Pmen_2029 Pmen_2030     TRUE 0.522 182.000 0.229 0.065 N NA
 3615253 3615254 Pmen_2030 Pmen_2031     TRUE 0.995 -3.000 0.205 0.065 Y NA
 3615254 3615255 Pmen_2031 Pmen_2032     TRUE 0.786 76.000 0.189 1.000 Y NA
 3615255 3615256 Pmen_2032 Pmen_2033     TRUE 0.850 101.000 0.316 1.000 Y NA
 3615256 3615257 Pmen_2033 Pmen_2034     TRUE 0.509 65.000 0.166 1.000 N NA
 3615258 3615259 Pmen_2035 Pmen_2036     TRUE 0.516 91.000 0.000 1.000 Y NA
 3615259 3615260 Pmen_2036 Pmen_2037     TRUE 0.520 85.000 0.000 1.000 Y NA
 3615261 3615262 Pmen_2038 Pmen_2039 ampC   TRUE 0.676 13.000 0.000 1.000 N NA
 3615265 3615266 Pmen_2042 Pmen_2043     TRUE 0.999 0.000 0.865 0.003 Y NA
 3615266 3615267 Pmen_2043 Pmen_2044     TRUE 0.999 -3.000 0.847 0.059 Y NA
 3615267 3615268 Pmen_2044 Pmen_2045     TRUE 0.999 9.000 0.922 0.059 Y NA
 3615268 3615269 Pmen_2045 Pmen_2046     TRUE 0.991 13.000 0.854 NA   NA
 3615269 3615270 Pmen_2046 Pmen_2047     FALSE 0.425 52.000 0.056 NA   NA
 3615272 3615273 Pmen_R0039 Pmen_R0040     FALSE 0.285 39.000 0.000 NA   NA
 3615273 3615274 Pmen_R0040 Pmen_R0041     FALSE 0.168 56.000 0.000 NA   NA
 3615274 3615275 Pmen_R0041 Pmen_2049   tig FALSE 0.110 127.000 0.000 NA   NA
 3615275 3615276 Pmen_2049 Pmen_2050 tig clpP TRUE 0.869 95.000 0.351 1.000 Y NA
 3615276 3615277 Pmen_2050 Pmen_2051 clpP clpX TRUE 0.865 108.000 0.352 1.000 Y NA
 3615277 3615278 Pmen_2051 Pmen_2052 clpX   TRUE 0.814 150.000 0.201 0.093 Y NA
 3615278 3615279 Pmen_2052 Pmen_2053     FALSE 0.250 136.000 0.040 1.000 N NA
 3615279 3615280 Pmen_2053 Pmen_2054     FALSE 0.104 196.000 0.017 1.000   NA
 3615281 3615282 Pmen_2055 Pmen_2056     FALSE 0.388 219.000 0.000 0.065 Y NA
 3615282 3615283 Pmen_2056 Pmen_2057     TRUE 0.700 29.000 0.057 1.000   NA
 3615283 3615284 Pmen_2057 Pmen_2058     TRUE 0.997 2.000 1.000 1.000   NA
 3615284 3615285 Pmen_2058 Pmen_2059     TRUE 0.998 3.000 1.000 0.059   NA
 3615285 3615286 Pmen_2059 Pmen_2060     TRUE 0.998 2.000 1.000 0.059   NA
 3615286 3615287 Pmen_2060 Pmen_2061     TRUE 0.995 -3.000 0.159 0.059 Y NA
 3615289 3615290 Pmen_2063 Pmen_2064     FALSE 0.253 251.000 0.233 1.000   NA
 3615291 3615292 Pmen_2065 Pmen_2066   rnhA FALSE 0.294 41.000 0.000 1.000   NA
 3615292 3615293 Pmen_2066 Pmen_2067 rnhA   TRUE 0.827 74.000 0.248 1.000 Y NA
 3615293 3615294 Pmen_2067 Pmen_2068     FALSE 0.201 123.000 0.019 1.000 N NA
 3615294 3615295 Pmen_2068 Pmen_2069     FALSE 0.120 203.000 0.035 1.000 N NA
 3615295 3615296 Pmen_2069 Pmen_2070     TRUE 0.736 47.000 0.250 NA   NA
 3615296 3615297 Pmen_2070 Pmen_2071   nudC TRUE 0.937 0.000 0.045 NA   NA
 3615300 3615301 Pmen_2074 Pmen_2075     TRUE 0.876 17.000 0.115 1.000   NA
 3615301 3615302 Pmen_2075 Pmen_2076     FALSE 0.082 268.000 0.000 0.093   NA
 3615302 3615303 Pmen_2076 Pmen_2077     TRUE 0.996 5.000 0.923 NA   NA
 3615303 3615304 Pmen_2077 Pmen_2078     TRUE 0.952 6.000 0.141 NA   NA
 3615305 3615306 Pmen_2079 Pmen_2080   prpB TRUE 0.953 -3.000 0.080 1.000 N NA
 3615306 3615307 Pmen_2080 Pmen_2081 prpB   TRUE 0.922 37.000 0.502 1.000 N NA
 3615307 3615308 Pmen_2081 Pmen_2082     TRUE 0.995 2.000 0.289 1.000 Y NA
 3615308 3615309 Pmen_2082 Pmen_2083     TRUE 0.767 177.000 0.733 NA   NA
 3615311 3615312 Pmen_2085 Pmen_2086     FALSE 0.126 188.000 0.029 NA   NA
 3615312 3615313 Pmen_2086 Pmen_2087     FALSE 0.142 252.000 0.113 NA   NA
 3615313 3615314 Pmen_2087 Pmen_2088     TRUE 0.938 6.000 0.093 NA N NA
 3615314 3615315 Pmen_2088 Pmen_2089     TRUE 0.466 56.000 0.093 NA   NA
 3615315 3615316 Pmen_2089 Pmen_2090     TRUE 0.980 2.000 0.256 NA   NA
 3615316 3615317 Pmen_2090 Pmen_2091     TRUE 0.614 83.000 0.279 NA   NA
 3615317 3615318 Pmen_2091 Pmen_2092     FALSE 0.120 109.000 0.000 1.000 N NA
 3615319 3615320 Pmen_2093 Pmen_2094     FALSE 0.324 66.000 0.048 1.000 N NA
 3615320 3615321 Pmen_2094 Pmen_2095     TRUE 0.738 110.000 0.294 0.055 N NA
 3615321 3615322 Pmen_2095 Pmen_2096     TRUE 0.997 -3.000 0.539 0.001 N NA
 3615322 3615323 Pmen_2096 Pmen_2097     FALSE 0.065 280.000 0.033 1.000 N NA
 3615323 3615324 Pmen_2097 Pmen_2098     TRUE 0.664 111.000 0.337 1.000 N NA
 3615324 3615325 Pmen_2098 Pmen_2099     FALSE 0.014 423.000 0.000 NA   NA
 3615325 3615326 Pmen_2099 Pmen_2100     FALSE 0.104 141.000 0.000 NA   NA
 3615326 3615327 Pmen_2100 Pmen_2101     FALSE 0.126 79.000 0.000 NA   NA
 3615327 3615328 Pmen_2101 Pmen_2102     FALSE 0.127 74.000 0.000 NA   NA
 3615328 3615329 Pmen_2102 Pmen_2103     FALSE 0.114 111.000 0.000 NA   NA
 3615329 3615330 Pmen_2103 Pmen_2104     TRUE 0.937 118.000 0.396 0.001 Y NA
 3615330 3615331 Pmen_2104 Pmen_2105     TRUE 0.993 13.000 0.514 NA Y NA
 3615331 3615332 Pmen_2105 Pmen_2106     FALSE 0.016 388.000 0.000 NA   NA
 3615335 3615336 Pmen_2109 Pmen_R0042     FALSE 0.118 94.000 0.000 NA   NA
 3615337 3615338 Pmen_2110 Pmen_2111     TRUE 0.994 0.000 0.600 NA   NA
 3615338 3615339 Pmen_2111 Pmen_2112     TRUE 0.647 154.000 0.400 NA   NA
 3615339 3615340 Pmen_2112 Pmen_2113     TRUE 0.995 0.000 0.667 NA   NA
 3615340 3615341 Pmen_2113 Pmen_2114     TRUE 0.826 2.000 0.000 NA   NA
 3615341 3615342 Pmen_2114 Pmen_2115     FALSE 0.018 354.000 0.000 NA   NA
 3615342 3615343 Pmen_2115 Pmen_2116     TRUE 0.996 10.000 1.000 NA   NA
 3615343 3615344 Pmen_2116 Pmen_2117     TRUE 0.991 16.000 1.000 NA   NA
 3615344 3615345 Pmen_2117 Pmen_2118     FALSE 0.114 119.000 0.000 NA   NA
 3615345 3615346 Pmen_2118 Pmen_2119     TRUE 0.637 14.000 0.000 NA   NA
 3615346 3615347 Pmen_2119 Pmen_2120     TRUE 0.791 5.000 0.000 NA   NA
 3615347 3615348 Pmen_2120 Pmen_2121     FALSE 0.275 40.000 0.000 NA   NA
 3615349 3615350 Pmen_2122 Pmen_2123     FALSE 0.131 68.000 0.000 NA   NA
 3615350 3615351 Pmen_2123 Pmen_2124     FALSE 0.209 48.000 0.000 NA   NA
 3615351 3615352 Pmen_2124 Pmen_2125     FALSE 0.173 55.000 0.000 NA   NA
 3615353 3615354 Pmen_2126 Pmen_2127     TRUE 0.980 -3.000 0.241 NA   NA
 3615355 3615356 Pmen_2128 Pmen_2129     FALSE 0.114 108.000 0.000 NA   NA
 3615356 3615357 Pmen_2129 Pmen_2130     TRUE 0.662 35.000 0.074 NA   NA
 3615361 3615362 Pmen_2134 Pmen_2135     TRUE 0.463 24.000 0.000 NA   NA
 3615362 3615363 Pmen_2135 Pmen_2136     TRUE 0.838 0.000 0.000 NA   NA
 3615363 3615364 Pmen_2136 Pmen_2137     TRUE 0.616 15.000 0.000 NA   NA
 3615365 3615366 Pmen_2138 Pmen_2139     FALSE 0.232 45.000 0.000 NA   NA
 3615366 3615367 Pmen_2139 Pmen_2140     FALSE 0.087 161.000 0.000 1.000 N NA
 3615367 3615368 Pmen_2140 Pmen_2141     FALSE 0.141 80.000 0.000 1.000   NA
 3615368 3615369 Pmen_2141 Pmen_2142     TRUE 0.929 3.000 0.041 1.000   NA
 3615370 3615371 Pmen_2143 Pmen_2144     FALSE 0.021 337.000 0.000 1.000 N NA
 3615372 3615373 Pmen_2145 Pmen_2146     FALSE 0.104 140.000 0.000 NA   NA
 3615373 3615374 Pmen_2146 Pmen_2147     TRUE 0.951 -16.000 0.165 NA   NA
 3615375 3615376 Pmen_2148 Pmen_2149     TRUE 0.524 56.000 0.136 NA   NA
 3615378 3615379 Pmen_2151 Pmen_2152     FALSE 0.235 46.000 0.000 1.000 N NA
 3615379 3615380 Pmen_2152 Pmen_2153     TRUE 0.945 23.000 0.400 1.000 N NA
 3615381 3615382 Pmen_2154 Pmen_2155     FALSE 0.119 139.000 0.000 1.000   NA
 3615382 3615383 Pmen_2155 Pmen_2156     TRUE 0.598 16.000 0.000 NA   NA
 3615385 3615386 Pmen_2158 Pmen_2159   metH FALSE 0.125 126.000 0.000 1.000   NA
 3615387 3615388 Pmen_2160 Pmen_2161     TRUE 0.450 116.000 0.030 0.014   NA
 3615389 3615390 Pmen_2162 Pmen_2163     TRUE 0.800 -6.000 0.000 NA   NA
 3615390 3615391 Pmen_2163 Pmen_2164     TRUE 0.885 -7.000 0.023 NA   NA
 3615391 3615392 Pmen_2164 Pmen_2165     FALSE 0.114 118.000 0.000 NA   NA
 3615392 3615393 Pmen_2165 Pmen_2166     FALSE 0.064 182.000 0.000 NA   NA
 3615393 3615394 Pmen_2166 Pmen_2167     TRUE 0.970 36.000 0.667 0.057   NA
 3615394 3615395 Pmen_2167 Pmen_2168     TRUE 0.498 24.000 0.000 1.000   NA
 3615396 3615397 Pmen_2169 Pmen_2170     FALSE 0.129 71.000 0.000 NA   NA
 3615398 3615399 Pmen_2171 Pmen_2172     TRUE 0.994 -3.000 0.242 NA Y NA
 3615399 3615400 Pmen_2172 Pmen_2173     FALSE 0.196 50.000 0.000 NA   NA
 3615400 3615401 Pmen_2173 Pmen_2174     TRUE 0.770 8.000 0.000 NA   NA
 3615402 3615403 Pmen_2175 Pmen_2176     TRUE 0.925 -3.000 0.029 1.000   NA
 3615404 3615405 Pmen_2177 Pmen_2178     TRUE 0.711 20.000 0.026 NA   NA
 3615405 3615406 Pmen_2178 Pmen_2179     FALSE 0.119 138.000 0.000 1.000   NA
 3615406 3615407 Pmen_2179 Pmen_2180     TRUE 0.996 -3.000 0.600 0.058 N NA
 3615407 3615408 Pmen_2180 Pmen_2181     TRUE 0.980 28.000 0.923 1.000 N NA
 3615408 3615409 Pmen_2181 Pmen_2182     FALSE 0.083 171.000 0.000 1.000   NA
 3615409 3615410 Pmen_2182 Pmen_2183     FALSE 0.070 186.000 0.000 1.000   NA
 3615411 3615412 Pmen_2184 Pmen_2185     FALSE 0.158 61.000 0.000 1.000 N NA
 3615412 3615413 Pmen_2185 Pmen_2186     FALSE 0.050 397.000 0.000 0.050 N NA
 3615414 3615415 Pmen_2187 Pmen_2188     FALSE 0.012 555.000 0.000 1.000 N NA
 3615418 3615419 Pmen_2191 Pmen_2192     TRUE 0.834 -3.000 0.000 NA   NA
 3615420 3615421 Pmen_2193 Pmen_2194     TRUE 0.976 14.000 0.460 1.000   NA
 3615421 3615422 Pmen_2194 Pmen_2195     TRUE 0.987 0.000 0.214 0.092   NA
 3615422 3615423 Pmen_2195 Pmen_2196     TRUE 0.996 -3.000 0.751 NA N NA
 3615424 3615425 Pmen_2197 Pmen_2198     TRUE 0.888 35.000 0.000 0.018 Y NA
 3615425 3615426 Pmen_2198 Pmen_2199     TRUE 0.995 3.000 0.143 0.001 Y NA
 3615431 3615432 Pmen_2204 Pmen_2205     TRUE 0.639 156.000 0.000 0.002 Y NA
 3615433 3615434 Pmen_2206 Pmen_2207     FALSE 0.357 34.000 0.000 NA   NA
 3615436 3615437 Pmen_2209 Pmen_2210     FALSE 0.119 90.000 0.000 NA   NA
 3615437 3615438 Pmen_2210 Pmen_2211     TRUE 0.999 -3.000 1.000 1.000 Y NA
 3615438 3615439 Pmen_2211 Pmen_2212     TRUE 0.842 -3.000 0.000 1.000 N NA
 3615439 3615440 Pmen_2212 Pmen_2213     FALSE 0.101 146.000 0.000 NA   NA
 3615440 3615441 Pmen_2213 Pmen_2214     FALSE 0.089 156.000 0.000 NA   NA
 3615442 3615443 Pmen_2215 Pmen_2216     TRUE 0.977 -28.000 0.333 NA   NA
 3615443 3615444 Pmen_2216 Pmen_2217     TRUE 0.993 10.000 0.750 1.000   NA
 3615444 3615445 Pmen_2217 Pmen_2218     TRUE 0.994 -10.000 0.750 NA   NA
 3615445 3615446 Pmen_2218 Pmen_2219     TRUE 0.971 13.000 0.375 NA   NA
 3615446 3615447 Pmen_2219 Pmen_2220     FALSE 0.385 189.000 0.250 NA   NA
 3615448 3615449 Pmen_2221 Pmen_2222     TRUE 0.893 45.000 0.542 NA   NA
 3615449 3615450 Pmen_2222 Pmen_2223     TRUE 0.982 -3.000 0.271 NA   NA
 3615450 3615451 Pmen_2223 Pmen_2224     FALSE 0.191 51.000 0.000 NA   NA
 3615452 3615453 Pmen_2225 Pmen_2226     FALSE 0.035 244.000 0.000 NA   NA
 3615453 3615454 Pmen_2226 Pmen_2227     FALSE 0.341 35.000 0.000 NA   NA
 3615454 3615455 Pmen_2227 Pmen_2228     TRUE 0.734 11.000 0.000 1.000 N NA
 3615455 3615456 Pmen_2228 Pmen_2229     FALSE 0.132 343.000 0.000 1.000 Y NA
 3615456 3615457 Pmen_2229 Pmen_2230     TRUE 0.969 6.000 0.222 NA   NA
 3615457 3615458 Pmen_2230 Pmen_2231     FALSE 0.125 80.000 0.000 NA   NA
 3615458 3615459 Pmen_2231 Pmen_2232     TRUE 0.653 148.000 0.000 0.004 Y NA
 3615459 3615460 Pmen_2232 Pmen_2233     FALSE 0.076 167.000 0.000 NA   NA
 3615461 3615462 Pmen_2234 Pmen_2235     TRUE 0.999 3.000 0.800 0.001 Y NA
 3615463 3615464 Pmen_2236 Pmen_2237     FALSE 0.015 395.000 0.000 NA   NA
 3615464 3615465 Pmen_2237 Pmen_2238     FALSE 0.114 119.000 0.000 NA   NA
 3615465 3615466 Pmen_2238 Pmen_2239     FALSE 0.011 616.000 0.000 NA   NA
 3615466 3615467 Pmen_2239 Pmen_2240     TRUE 0.987 13.000 0.667 NA   NA
 3615467 3615468 Pmen_2240 Pmen_2241     FALSE 0.209 48.000 0.000 NA   NA
 3615469 3615470 Pmen_2242 Pmen_2243     TRUE 0.939 9.000 0.111 NA   NA
 3615470 3615471 Pmen_2243 Pmen_2244     TRUE 0.891 1.000 0.012 NA   NA
 3615471 3615472 Pmen_2244 Pmen_2245     TRUE 0.897 0.000 0.012 NA   NA
 3615473 3615474 Pmen_2246 Pmen_2247     TRUE 0.997 10.000 0.667 NA Y NA
 3615474 3615475 Pmen_2247 Pmen_2248     TRUE 0.927 -7.000 0.061 NA   NA
 3615475 3615476 Pmen_2248 Pmen_2249     FALSE 0.023 302.000 0.000 NA   NA
 3615478 3615479 Pmen_2251 Pmen_2252     FALSE 0.402 29.000 0.000 NA   NA
 3615479 3615480 Pmen_2252 Pmen_2253     TRUE 0.747 10.000 0.000 NA   NA
 3615481 3615482 Pmen_2254 Pmen_2255     TRUE 0.994 11.000 0.600 0.003   NA
 3615483 3615484 Pmen_2256 Pmen_2257     TRUE 0.690 40.000 0.154 NA   NA
 3615484 3615485 Pmen_2257 Pmen_2258     FALSE 0.077 166.000 0.000 NA   NA
 3615486 3615487 Pmen_2259 Pmen_2260     TRUE 0.746 -1711.000 0.000 NA   NA
 3615488 3615489 Pmen_2261 Pmen_2262     FALSE 0.390 87.000 0.000 0.003   NA
 3615489 3615490 Pmen_2262 Pmen_2263     FALSE 0.123 130.000 0.000 1.000   NA
 3615493 3615494 Pmen_2266 Pmen_2267     TRUE 0.999 -3.000 0.905 0.003 Y NA
 3615494 3615495 Pmen_2267 Pmen_2268     TRUE 0.982 0.000 0.263 NA   NA
 3615495 3615496 Pmen_2268 Pmen_2269     TRUE 0.993 -9.000 0.714 NA   NA
 3615496 3615497 Pmen_2269 Pmen_2270     FALSE 0.011 674.000 0.000 NA   NA
 3615497 3615498 Pmen_2270 Pmen_2271     FALSE 0.107 134.000 0.000 NA   NA
 3615498 3615499 Pmen_2271 Pmen_2272     FALSE 0.114 105.000 0.000 NA   NA
 3615501 3615502 Pmen_2274 Pmen_2275     FALSE 0.327 36.000 0.000 NA   NA
 3615504 3615505 Pmen_2277 Pmen_2278 glgA   TRUE 0.999 0.000 0.917 1.000 Y NA
 3615505 3615506 Pmen_2278 Pmen_2279     TRUE 0.996 -3.000 0.204 0.004 Y NA
 3615506 3615507 Pmen_2279 Pmen_2280     TRUE 0.994 -7.000 0.141 0.004 Y NA
 3615507 3615508 Pmen_2280 Pmen_2281     TRUE 0.763 17.000 0.031 NA   NA
 3615508 3615509 Pmen_2281 Pmen_2282     TRUE 0.981 11.000 0.417 NA   NA
 3615509 3615510 Pmen_2282 Pmen_2283     FALSE 0.025 299.000 0.000 1.000 N NA
 3615510 3615511 Pmen_2283 Pmen_2284     FALSE 0.402 29.000 0.000 NA   NA
 3615511 3615512 Pmen_2284 Pmen_2285     TRUE 0.995 -3.000 0.636 NA   NA
 3615512 3615513 Pmen_2285 Pmen_2286     TRUE 0.988 -3.000 0.357 NA   NA
 3615513 3615514 Pmen_2286 Pmen_2287     FALSE 0.114 111.000 0.000 NA   NA
 3615516 3615517 Pmen_2289 Pmen_2290     TRUE 0.834 -3.000 0.000 NA   NA
 3615517 3615518 Pmen_2290 Pmen_2291     TRUE 0.967 -13.000 0.221 1.000   NA
 3615518 3615519 Pmen_2291 Pmen_2292     FALSE 0.154 66.000 0.000 1.000   NA
 3615520 3615521 Pmen_2293 Pmen_2294     TRUE 0.984 15.000 0.115 0.004 Y NA
 3615521 3615522 Pmen_2294 Pmen_2295     TRUE 0.987 18.000 0.544 0.004   NA
 3615522 3615523 Pmen_2295 Pmen_2296     FALSE 0.108 133.000 0.000 NA   NA
 3615525 3615526 Pmen_2298 Pmen_2299     FALSE 0.147 62.000 0.000 NA   NA
 3615526 3615527 Pmen_2299 Pmen_2300     FALSE 0.116 101.000 0.000 NA   NA
 3615527 3615528 Pmen_2300 Pmen_2301     FALSE 0.179 58.000 0.000 1.000   NA
 3615529 3615530 Pmen_2302 Pmen_2303     TRUE 0.942 15.000 0.250 NA   NA
 3615531 3615532 Pmen_2304 Pmen_2305     FALSE 0.126 79.000 0.000 NA   NA
 3615532 3615533 Pmen_2305 Pmen_2306     FALSE 0.114 115.000 0.000 NA   NA
 3615533 3615534 Pmen_2306 Pmen_2307     FALSE 0.416 29.000 0.000 1.000 N NA
 3615534 3615535 Pmen_2307 Pmen_2308     FALSE 0.094 153.000 0.000 NA   NA
 3615535 3615536 Pmen_2308 Pmen_2309     FALSE 0.163 57.000 0.000 NA   NA
 3615536 3615537 Pmen_2309 Pmen_2310     TRUE 0.854 87.000 0.714 NA   NA
 3615537 3615538 Pmen_2310 Pmen_2311     TRUE 0.958 -7.000 0.161 NA   NA
 3615538 3615539 Pmen_2311 Pmen_2312     TRUE 0.826 0.000 0.000 NA N NA
 3615539 3615540 Pmen_2312 Pmen_2313     TRUE 0.938 0.000 0.000 0.091 N NA
 3615540 3615541 Pmen_2313 Pmen_2314     TRUE 0.997 16.000 1.000 1.000 Y NA
 3615541 3615542 Pmen_2314 Pmen_2315     TRUE 0.964 -3.000 0.128 NA   NA
 3615542 3615543 Pmen_2315 Pmen_2316     TRUE 0.964 -3.000 0.128 NA   NA
 3615543 3615544 Pmen_2316 Pmen_2317     TRUE 0.995 -3.000 0.714 NA   NA
 3615544 3615545 Pmen_2317 Pmen_2318     TRUE 0.994 7.000 0.714 1.000   NA
 3615545 3615546 Pmen_2318 Pmen_2319     TRUE 0.983 21.000 0.833 NA   NA
 3615546 3615547 Pmen_2319 Pmen_2320     TRUE 0.892 75.000 0.833 NA   NA
 3615548 3615549 Pmen_2321 Pmen_2322     TRUE 0.574 64.000 0.209 NA   NA
 3615549 3615550 Pmen_2322 Pmen_2323     TRUE 0.979 16.000 0.588 NA   NA
 3615550 3615551 Pmen_2323 Pmen_2324     TRUE 0.641 77.000 0.294 NA   NA
 3615551 3615552 Pmen_2324 Pmen_2325     FALSE 0.127 74.000 0.000 NA   NA
 3615552 3615553 Pmen_2325 Pmen_2326     TRUE 0.834 -3.000 0.000 NA   NA
 3615553 3615554 Pmen_2326 Pmen_2327     FALSE 0.217 47.000 0.000 NA   NA
 3615554 3615555 Pmen_2327 Pmen_2328     TRUE 0.983 3.000 0.311 NA   NA
 3615555 3615556 Pmen_2328 Pmen_2329     TRUE 0.960 -3.000 0.111 NA   NA
 3615556 3615557 Pmen_2329 Pmen_2330     TRUE 0.975 15.000 0.500 NA   NA
 3615557 3615558 Pmen_2330 Pmen_2331     TRUE 0.982 -7.000 0.333 NA   NA
 3615558 3615559 Pmen_2331 Pmen_2332     TRUE 0.777 31.000 0.143 NA   NA
 3615559 3615560 Pmen_2332 Pmen_2333     TRUE 0.940 11.000 0.160 NA   NA
 3615560 3615561 Pmen_2333 Pmen_2334     TRUE 0.907 15.000 0.160 NA   NA
 3615561 3615562 Pmen_2334 Pmen_2335     TRUE 0.975 0.000 0.200 NA   NA
 3615562 3615563 Pmen_2335 Pmen_2336     TRUE 0.975 0.000 0.200 NA   NA
 3615563 3615564 Pmen_2336 Pmen_2337     TRUE 0.663 13.000 0.000 NA   NA
 3615564 3615565 Pmen_2337 Pmen_2338     FALSE 0.243 44.000 0.000 NA   NA
 3615567 3615568 Pmen_2340 Pmen_2341     TRUE 0.924 -12.000 0.065 1.000   NA
 3615568 3615569 Pmen_2341 Pmen_2342     TRUE 0.887 10.000 0.036 1.000 N NA
 3615569 3615570 Pmen_2342 Pmen_2343     TRUE 0.992 -3.000 0.348 0.076 N NA
 3615570 3615571 Pmen_2343 Pmen_2344     FALSE 0.095 152.000 0.000 NA   NA
 3615572 3615573 Pmen_2345 Pmen_2346     TRUE 1.000 -3.000 0.943 0.001 Y NA
 3615573 3615574 Pmen_2346 Pmen_2347     TRUE 0.999 -3.000 0.833 0.056 Y NA
 3615576 3615577 Pmen_2349 Pmen_2350     TRUE 0.817 3.000 0.000 NA   NA
 3615577 3615578 Pmen_2350 Pmen_2351     TRUE 0.770 8.000 0.000 NA   NA
 3615580 3615581 Pmen_2353 Pmen_2354     TRUE 0.922 44.000 0.273 1.000 Y NA
 3615586 3615587 Pmen_2359 Pmen_2360     FALSE 0.099 147.000 0.000 NA   NA
 3615587 3615588 Pmen_2360 Pmen_2361     FALSE 0.041 243.000 0.000 1.000   NA
 3615588 3615589 Pmen_2361 Pmen_2362     TRUE 0.998 4.000 0.500 0.006 Y NA
 3615589 3615590 Pmen_2362 Pmen_2363     TRUE 0.991 0.000 0.452 NA N NA
 3615590 3615591 Pmen_2363 Pmen_2364     TRUE 0.759 55.000 0.346 NA N NA
 3615591 3615592 Pmen_2364 Pmen_2365     TRUE 0.999 2.000 0.800 NA Y NA
 3615592 3615593 Pmen_2365 Pmen_2366     TRUE 0.989 -16.000 0.222 1.000 Y NA
 3615594 3615595 Pmen_2367 Pmen_2368     FALSE 0.044 219.000 0.000 NA   NA
 3615595 3615596 Pmen_2368 Pmen_2369     FALSE 0.066 324.000 0.000 0.062   NA
 3615596 3615597 Pmen_2369 Pmen_2370     FALSE 0.043 238.000 0.000 1.000   NA
 3615597 3615598 Pmen_2370 Pmen_2371     FALSE 0.114 106.000 0.000 NA   NA
 3615598 3615599 Pmen_2371 Pmen_2372     FALSE 0.119 88.000 0.000 NA   NA
 3615599 3615600 Pmen_2372 Pmen_R0043     FALSE 0.111 126.000 0.000 NA   NA
 3615600 3615601 Pmen_R0043 Pmen_R0044     FALSE 0.113 121.000 0.000 NA   NA
 3615601 3615602 Pmen_R0044 Pmen_R0045     FALSE 0.285 39.000 0.000 NA   NA
 3615602 3615603 Pmen_R0045 Pmen_2373     FALSE 0.131 68.000 0.000 NA   NA
 3615603 3615604 Pmen_2373 Pmen_2374   uvrC TRUE 0.836 34.000 0.227 1.000 N NA
 3615604 3615605 Pmen_2374 Pmen_2375 uvrC   TRUE 0.975 3.000 0.086 0.024 N NA
 3615605 3615606 Pmen_2375 Pmen_R0046     FALSE 0.079 164.000 0.000 NA   NA
 3615607 3615608 Pmen_2376 Pmen_2377     FALSE 0.432 136.000 0.167 NA   NA
 3615608 3615609 Pmen_2377 Pmen_2378     TRUE 0.999 1.000 0.790 NA Y NA
 3615609 3615610 Pmen_2378 Pmen_2379     TRUE 0.999 0.000 0.804 NA Y NA
 3615610 3615611 Pmen_2379 Pmen_2380     TRUE 0.995 -3.000 0.317 NA Y NA
 3615611 3615612 Pmen_2380 Pmen_2381     TRUE 0.947 -3.000 0.072 NA N NA
 3615612 3615613 Pmen_2381 Pmen_2382     FALSE 0.299 75.000 0.051 NA N NA
 3615614 3615615 Pmen_2383 Pmen_2384     FALSE 0.190 157.000 0.031 1.000 N NA
 3615615 3615616 Pmen_2384 Pmen_2385     FALSE 0.247 79.000 0.028 1.000 N NA
 3615616 3615617 Pmen_2385 Pmen_2386     TRUE 0.919 -3.000 0.027 1.000 N NA
 3615617 3615618 Pmen_2386 Pmen_2387   lolA TRUE 0.964 4.000 0.167 1.000 N NA
 3615618 3615619 Pmen_2387 Pmen_2388 lolA   TRUE 0.621 125.000 0.305 1.000 N NA
 3615620 3615621 Pmen_2389 Pmen_2390   aat TRUE 0.728 56.000 0.046 1.000 Y NA
 3615621 3615622 Pmen_2390 Pmen_2391 aat   TRUE 0.889 55.000 0.285 1.000 Y NA
 3615622 3615623 Pmen_2391 Pmen_2392   infA FALSE 0.322 136.000 0.078 1.000 N NA
 3615624 3615625 Pmen_2393 Pmen_2394   clpS TRUE 0.954 30.000 0.596 NA   NA
 3615628 3615629 Pmen_2397 Pmen_2398     FALSE 0.243 113.000 0.032 1.000 N NA
 3615629 3615630 Pmen_2398 Pmen_2399   trmU FALSE 0.431 128.000 0.158 1.000 N NA
 3615630 3615631 Pmen_2399 Pmen_2400 trmU   TRUE 0.971 -3.000 0.180 NA   NA
 3615631 3615632 Pmen_2400 Pmen_2401     TRUE 0.887 3.000 0.014 NA   NA
 3615632 3615633 Pmen_2401 Pmen_2402     FALSE 0.146 149.000 0.002 1.000   NA
 3615633 3615634 Pmen_2402 Pmen_2403     FALSE 0.244 79.000 0.029 NA   NA
 3615634 3615635 Pmen_2403 Pmen_2404     TRUE 0.960 -7.000 0.167 NA   NA
 3615635 3615636 Pmen_2404 Pmen_2405     TRUE 0.959 9.000 0.191 NA   NA
 3615636 3615637 Pmen_2405 Pmen_2406     TRUE 0.983 -3.000 0.280 NA   NA
 3615637 3615638 Pmen_2406 Pmen_2407     FALSE 0.013 559.000 0.000 1.000   NA
 3615638 3615639 Pmen_2407 Pmen_2408     FALSE 0.067 289.000 0.044 NA   NA
 3615639 3615640 Pmen_2408 Pmen_2409     FALSE 0.109 129.000 0.000 NA   NA
 3615641 3615642 Pmen_2410 Pmen_2411     FALSE 0.143 64.000 0.000 NA   NA
 3615643 3615644 Pmen_2412 Pmen_2413     TRUE 0.996 11.000 0.377 0.002 Y NA
 3615644 3615645 Pmen_2413 Pmen_2414     TRUE 0.976 63.000 0.691 0.002 Y NA
 3615645 3615646 Pmen_2414 Pmen_2415     TRUE 0.998 2.000 0.407 0.005 Y NA
 3615646 3615647 Pmen_2415 Pmen_2416     TRUE 0.996 -3.000 0.186 0.005 Y NA
 3615647 3615648 Pmen_2416 Pmen_2417     TRUE 0.897 59.000 0.180 0.005 Y NA
 3615648 3615649 Pmen_2417 Pmen_2418     TRUE 0.999 -3.000 0.664 0.005 Y NA
 3615649 3615650 Pmen_2418 Pmen_2419     TRUE 0.995 14.000 0.423 0.005 Y NA
 3615650 3615651 Pmen_2419 Pmen_2420     TRUE 0.946 68.000 0.428 0.005 Y NA
 3615651 3615652 Pmen_2420 Pmen_2421     TRUE 0.997 -3.000 0.269 0.002 Y NA
 3615652 3615653 Pmen_2421 Pmen_2422     TRUE 0.996 -3.000 0.211 0.005 Y NA
 3615653 3615654 Pmen_2422 Pmen_2423     TRUE 0.998 14.000 0.713 0.002 Y NA
 3615654 3615655 Pmen_2423 Pmen_2424     TRUE 0.998 4.000 0.437 0.002 Y NA
 3615658 3615659 Pmen_2427 Pmen_2428     TRUE 0.550 147.000 0.267 1.000 N NA
 3615659 3615660 Pmen_2428 Pmen_2429     TRUE 0.996 -3.000 0.556 0.099 N NA
 3615660 3615661 Pmen_2429 Pmen_2430     TRUE 0.942 122.000 0.741 NA Y NA
 3615661 3615662 Pmen_2430 Pmen_2431     TRUE 0.994 -3.000 0.619 NA N NA
 3615662 3615663 Pmen_2431 Pmen_2432     FALSE 0.016 937.000 0.007 1.000 N NA
 3615663 3615664 Pmen_2432 Pmen_2433     FALSE 0.098 176.000 0.004 NA   NA
 3615664 3615665 Pmen_2433 Pmen_2434     TRUE 0.994 -3.000 0.575 NA   NA
 3615665 3615666 Pmen_2434 Pmen_2435     FALSE 0.285 68.000 0.033 1.000   NA
 3615667 3615668 Pmen_2436 Pmen_2437     FALSE 0.300 103.000 0.056 1.000 N NA
 3615668 3615669 Pmen_2437 Pmen_2438     TRUE 0.454 178.000 0.029 1.000 Y NA
 3615672 3615673 Pmen_2441 Pmen_2442     TRUE 0.738 106.000 0.444 1.000   NA
 3615674 3615675 Pmen_2443 Pmen_2444     FALSE 0.354 87.000 0.089 NA N NA
 3615675 3615676 Pmen_2444 Pmen_2445     TRUE 0.633 103.000 0.312 NA   NA
 3615677 3615678 Pmen_2446 Pmen_2447     FALSE 0.397 89.000 0.116 NA   NA
 3615678 3615679 Pmen_2447 Pmen_2448     FALSE 0.233 77.000 0.025 NA   NA
 3615679 3615680 Pmen_2448 Pmen_2449     TRUE 0.996 -3.000 0.727 NA   NA
 3615680 3615681 Pmen_2449 Pmen_2450     TRUE 0.996 0.000 0.739 NA   NA
 3615681 3615682 Pmen_2450 Pmen_2451     FALSE 0.202 96.000 0.013 1.000   NA
 3615682 3615683 Pmen_2451 Pmen_2452     FALSE 0.128 122.000 0.000 1.000   NA
 3615683 3615684 Pmen_2452 Pmen_2453     TRUE 0.918 0.000 0.026 NA   NA
 3615684 3615685 Pmen_2453 Pmen_2454     FALSE 0.379 41.000 0.012 NA   NA
 3615685 3615686 Pmen_2454 Pmen_2455     TRUE 0.977 0.000 0.214 NA   NA
 3615688 3615689 Pmen_2457 Pmen_2458     TRUE 0.768 75.000 0.478 NA   NA
 3615689 3615690 Pmen_2458 Pmen_2459     FALSE 0.324 156.000 0.118 NA   NA
 3615690 3615691 Pmen_2459 Pmen_2460     TRUE 0.957 -3.000 0.096 NA   NA
 3615691 3615692 Pmen_2460 Pmen_2461     FALSE 0.230 100.000 0.029 NA   NA
 3615692 3615693 Pmen_2461 Pmen_2462     TRUE 0.910 42.000 0.545 1.000 N NA
 3615693 3615694 Pmen_2462 Pmen_2463     FALSE 0.365 59.000 0.057 NA N NA
 3615694 3615695 Pmen_2463 Pmen_2464     TRUE 0.521 56.000 0.143 NA N NA
 3615695 3615696 Pmen_2464 Pmen_2465     FALSE 0.255 141.000 0.045 1.000 N NA
 3615696 3615697 Pmen_2465 Pmen_2466     TRUE 0.960 -3.000 0.114 NA   NA
 3615697 3615698 Pmen_2466 Pmen_2467   gpsA TRUE 0.882 29.000 0.273 NA   NA
 3615699 3615700 Pmen_2468 Pmen_2469     FALSE 0.049 215.000 0.000 1.000 N NA
 3615700 3615701 Pmen_2469 Pmen_2470     TRUE 0.993 12.000 0.451 1.000 Y NA
 3615702 3615703 Pmen_2471 Pmen_2472     FALSE 0.026 286.000 0.000 NA   NA
 3615703 3615704 Pmen_2472 Pmen_2473     TRUE 0.937 5.000 0.080 NA   NA
 3615704 3615705 Pmen_2473 Pmen_2474     TRUE 0.927 -3.000 0.030 1.000   NA
 3615705 3615706 Pmen_2474 Pmen_2475     TRUE 0.955 10.000 0.182 1.000   NA
 3615707 3615708 Pmen_2476 Pmen_2477     TRUE 0.996 -10.000 0.467 1.000 Y NA
 3615708 3615709 Pmen_2477 Pmen_2478     TRUE 0.635 82.000 0.286 1.000   NA
 3615709 3615710 Pmen_2478 Pmen_2479     TRUE 0.983 2.000 0.286 1.000   NA
 3615710 3615711 Pmen_2479 Pmen_2480     TRUE 0.937 -3.000 0.000 0.099   NA
 3615712 3615713 Pmen_2481 Pmen_2482     TRUE 0.712 67.000 0.357 NA   NA
 3615714 3615715 Pmen_2483 Pmen_2484     FALSE 0.161 60.000 0.000 1.000 N NA
 3615715 3615716 Pmen_2484 Pmen_2485     TRUE 0.913 -3.000 0.025 NA   NA
 3615716 3615717 Pmen_2485 Pmen_2486     FALSE 0.163 57.000 0.000 NA   NA
 3615717 3615718 Pmen_2486 Pmen_2487     FALSE 0.115 103.000 0.000 NA   NA
 3615718 3615719 Pmen_2487 Pmen_2488     TRUE 0.992 -3.000 0.511 NA   NA
 3615719 3615720 Pmen_2488 Pmen_2489     FALSE 0.247 165.000 0.077 NA   NA
 3615721 3615722 Pmen_2490 Pmen_2491     FALSE 0.051 256.000 0.008 1.000 N NA
 3615722 3615723 Pmen_2491 Pmen_2492     FALSE 0.172 85.000 0.007 NA   NA
 3615723 3615724 Pmen_2492 Pmen_2493     FALSE 0.420 52.000 0.054 NA   NA
 3615724 3615725 Pmen_2493 Pmen_2494     TRUE 0.999 -3.000 0.845 NA Y NA
 3615727 3615728 Pmen_2496 Pmen_2497     TRUE 0.928 -3.000 0.036 NA   NA
 3615728 3615729 Pmen_2497 Pmen_2498     FALSE 0.276 103.000 0.048 NA   NA
 3615729 3615730 Pmen_2498 Pmen_2499     FALSE 0.013 478.000 0.000 1.000 N NA
 3615730 3615731 Pmen_2499 Pmen_2500   sucC TRUE 0.999 0.000 0.806 0.000 Y NA
 3615731 3615732 Pmen_2500 Pmen_2501 sucC   FALSE 0.366 241.000 0.069 1.000 Y NA
 3615732 3615733 Pmen_2501 Pmen_2502     TRUE 0.841 67.000 0.253 1.000 Y NA
 3615733 3615734 Pmen_2502 Pmen_2503   kgd TRUE 0.948 66.000 0.667 1.000 Y NA
 3615734 3615735 Pmen_2503 Pmen_2504 kgd sdhB FALSE 0.343 251.000 0.067 1.000 Y NA
 3615735 3615736 Pmen_2504 Pmen_2505 sdhB sdhA TRUE 0.998 12.000 0.604 0.001 Y NA
 3615736 3615737 Pmen_2505 Pmen_2506 sdhA   TRUE 0.999 4.000 0.705 0.001 Y NA
 3615737 3615738 Pmen_2506 Pmen_2507     TRUE 0.998 -6.000 0.453 0.000 Y NA
 3615740 3615741 Pmen_2509 Pmen_2510     FALSE 0.405 62.000 0.080 NA   NA
 3615741 3615742 Pmen_2510 Pmen_2511     FALSE 0.127 74.000 0.000 NA   NA
 3615743 3615744 Pmen_2512 Pmen_2513     FALSE 0.321 66.000 0.049 NA   NA
 3615744 3615745 Pmen_2513 Pmen_2514     FALSE 0.128 72.000 0.000 NA   NA
 3615746 3615747 Pmen_2515 Pmen_2516     TRUE 0.762 9.000 0.000 NA   NA
 3615747 3615748 Pmen_2516 Pmen_2517     TRUE 0.869 -7.000 0.014 NA   NA
 3615748 3615749 Pmen_2517 Pmen_2518     TRUE 0.834 -3.000 0.000 NA   NA
 3615749 3615750 Pmen_2518 Pmen_2519     TRUE 0.854 10.000 0.020 NA   NA
 3615753 3615754 Pmen_2522 Pmen_2523     TRUE 0.898 7.000 0.036 NA   NA
 3615754 3615755 Pmen_2523 Pmen_2524     FALSE 0.233 89.000 0.029 NA   NA
 3615760 3615761 Pmen_2529 Pmen_2530     FALSE 0.262 93.000 0.036 1.000 N NA
 3615762 3615763 Pmen_2531 Pmen_2532     TRUE 0.733 59.000 0.344 NA N NA
 3615764 3615765 Pmen_2533 Pmen_2534     TRUE 0.959 5.000 0.154 1.000   NA
 3615765 3615766 Pmen_2534 Pmen_2535     TRUE 0.974 19.000 0.571 NA   NA
 3615766 3615767 Pmen_2535 Pmen_2536     TRUE 0.865 39.000 0.357 NA   NA
 3615767 3615768 Pmen_2536 Pmen_2537     FALSE 0.120 85.000 0.000 NA   NA
 3615768 3615769 Pmen_2537 Pmen_2538     FALSE 0.037 241.000 0.000 NA   NA
 3615769 3615770 Pmen_2538 Pmen_2539     TRUE 0.998 -3.000 0.400 0.023 Y NA
 3615772 3615773 Pmen_2541 Pmen_2542     TRUE 0.878 40.000 0.400 1.000   NA
 3615777 3615778 Pmen_2546 Pmen_2547 cysB   FALSE 0.350 106.000 0.085 1.000 N NA
 3615778 3615779 Pmen_2547 Pmen_2548     FALSE 0.201 181.000 0.061 1.000   NA
 3615779 3615780 Pmen_2548 Pmen_2549     TRUE 0.941 3.000 0.061 1.000   NA
 3615780 3615781 Pmen_2549 Pmen_2550     TRUE 0.938 0.000 0.047 NA   NA
 3615782 3615783 Pmen_2551 Pmen_2552     FALSE 0.234 150.000 0.045 NA   NA
 3615784 3615785 Pmen_2553 Pmen_2554     FALSE 0.117 142.000 0.000 1.000   NA
 3615787 3615788 Pmen_2556 Pmen_2557     TRUE 0.851 71.000 0.667 NA   NA
 3615788 3615789 Pmen_2557 Pmen_2558     FALSE 0.315 57.000 0.031 NA   NA
 3615790 3615791 Pmen_2559 Pmen_2560     TRUE 0.998 0.000 0.535 1.000 Y NA
 3615791 3615792 Pmen_2560 Pmen_2561     FALSE 0.401 55.000 0.053 1.000 N NA
 3615794 3615795 Pmen_2563 Pmen_2564     FALSE 0.088 193.000 0.005 1.000   NA
 3615795 3615796 Pmen_2564 Pmen_2565     FALSE 0.393 118.000 0.109 1.000   NA
 3615797 3615798 Pmen_2566 Pmen_2567     FALSE 0.301 124.000 0.061 1.000 N NA
 3615798 3615799 Pmen_2567 Pmen_2568     TRUE 0.934 58.000 0.500 1.000 Y NA
 3615799 3615800 Pmen_2568 Pmen_2569     TRUE 0.658 50.000 0.000 1.000 Y NA
 3615802 3615803 Pmen_2571 Pmen_2572 cysS   TRUE 0.991 1.000 0.032 0.036 Y NA
 3615804 3615805 Pmen_2573 Pmen_2574     TRUE 0.974 5.000 0.237 1.000   NA
 3615809 3615810 Pmen_2578 Pmen_2579     FALSE 0.101 146.000 0.000 NA   NA
 3615810 3615811 Pmen_2579 Pmen_2580     FALSE 0.042 226.000 0.000 NA   NA
 3615811 3615812 Pmen_2580 Pmen_2581     TRUE 0.903 20.000 0.218 NA N NA
 3615812 3615813 Pmen_2581 Pmen_2582     FALSE 0.043 239.000 0.000 1.000   NA
 3615813 3615814 Pmen_2582 Pmen_2583     FALSE 0.104 154.000 0.000 1.000   NA
 3615814 3615815 Pmen_2583 Pmen_2584     FALSE 0.086 162.000 0.000 1.000 N NA
 3615815 3615816 Pmen_2584 Pmen_2585     FALSE 0.101 146.000 0.000 NA   NA
 3615816 3615817 Pmen_2585 Pmen_2586     TRUE 0.762 9.000 0.000 NA   NA
 3615819 3615820 Pmen_2588 Pmen_2589     FALSE 0.173 55.000 0.000 NA   NA
 3615821 3615822 Pmen_2590 Pmen_2591     TRUE 0.897 162.000 0.600 1.000 Y NA
 3615823 3615824 Pmen_2592 Pmen_2593     TRUE 0.834 -3.000 0.000 NA   NA
 3615825 3615826 Pmen_2594 Pmen_2595     FALSE 0.114 112.000 0.000 NA   NA
 3615826 3615827 Pmen_2595 Pmen_2596     TRUE 0.988 -3.000 0.365 NA   NA
 3615827 3615828 Pmen_2596 Pmen_2597     TRUE 0.995 4.000 0.805 NA   NA
 3615828 3615829 Pmen_2597 Pmen_2598     FALSE 0.015 393.000 0.000 NA   NA
 3615830 3615831 Pmen_2599 Pmen_2600     TRUE 0.959 0.000 0.000 0.003 N NA
 3615831 3615832 Pmen_2600 Pmen_2601     TRUE 0.783 6.000 0.000 NA   NA
 3615832 3615833 Pmen_2601 Pmen_2602     TRUE 0.834 -3.000 0.000 NA   NA
 3615833 3615834 Pmen_2602 Pmen_2603     FALSE 0.191 51.000 0.000 NA   NA
 3615834 3615835 Pmen_2603 Pmen_2604     TRUE 0.579 17.000 0.000 NA   NA
 3615835 3615836 Pmen_2604 Pmen_2605     TRUE 0.998 0.000 0.667 0.003 N NA
 3615836 3615837 Pmen_2605 Pmen_2606     TRUE 0.961 7.000 0.030 0.003 N NA
 3615837 3615838 Pmen_2606 Pmen_2607     TRUE 0.958 -3.000 0.000 0.003 N NA
 3615838 3615839 Pmen_2607 Pmen_2608     TRUE 0.599 156.000 0.000 0.018 Y NA
 3615839 3615840 Pmen_2608 Pmen_2609     TRUE 0.893 14.000 0.111 NA   NA
 3615840 3615841 Pmen_2609 Pmen_2610     TRUE 0.960 9.000 0.197 NA   NA
 3615841 3615842 Pmen_2610 Pmen_2611     TRUE 0.992 21.000 0.713 NA Y NA
 3615842 3615843 Pmen_2611 Pmen_2612     TRUE 0.976 -7.000 0.266 NA   NA
 3615843 3615844 Pmen_2612 Pmen_2613     FALSE 0.211 168.000 0.051 1.000   NA
 3615846 3615847 Pmen_2615 Pmen_2616     FALSE 0.362 45.000 0.016 1.000 N NA
 3615847 3615848 Pmen_2616 Pmen_2617     FALSE 0.134 94.000 0.000 1.000   NA
 3615848 3615849 Pmen_2617 Pmen_2618     FALSE 0.048 225.000 0.000 1.000   NA
 3615851 3615852 Pmen_2620 Pmen_2621     TRUE 0.943 -3.000 0.050 1.000   NA
 3615852 3615853 Pmen_2621 Pmen_2622     FALSE 0.051 199.000 0.000 NA   NA
 3615854 3615855 Pmen_2623 Pmen_2624     FALSE 0.217 47.000 0.000 NA   NA
 3615855 3615856 Pmen_2624 Pmen_2625     TRUE 0.948 44.000 0.400 1.000 Y NA
 3615857 3615858 Pmen_2626 Pmen_2627     FALSE 0.202 49.000 0.000 NA   NA
 3615858 3615859 Pmen_2627 Pmen_2628     TRUE 0.838 0.000 0.000 NA   NA
 3615859 3615860 Pmen_2628 Pmen_2629     FALSE 0.134 67.000 0.000 NA   NA
 3615860 3615861 Pmen_2629 Pmen_2630     FALSE 0.017 378.000 0.000 1.000 N NA
 3615861 3615862 Pmen_2630 Pmen_2631     FALSE 0.159 58.000 0.000 NA   NA
 3615862 3615863 Pmen_2631 Pmen_2632     TRUE 0.932 34.000 0.500 NA   NA
 3615864 3615865 Pmen_2633 Pmen_2634     TRUE 0.807 24.000 0.109 1.000 N NA
 3615865 3615866 Pmen_2634 Pmen_2635     TRUE 0.864 29.000 0.226 1.000   NA
 3615866 3615867 Pmen_2635 Pmen_2636     TRUE 0.921 19.000 0.226 1.000   NA
 3615867 3615868 Pmen_2636 Pmen_2637     FALSE 0.314 115.000 0.000 0.053   NA
 3615870 3615871 Pmen_2639 Pmen_2640     TRUE 0.463 24.000 0.000 NA   NA
 3615871 3615872 Pmen_2640 Pmen_2641   ftrA FALSE 0.133 77.000 0.000 1.000 N NA
 3615873 3615874 Pmen_2642 Pmen_2643     TRUE 0.899 -6.000 0.023 1.000   NA
 3615875 3615876 Pmen_2644 Pmen_2645   recR FALSE 0.418 31.000 0.000 1.000   NA
 3615876 3615877 Pmen_2645 Pmen_2646 recR   TRUE 0.527 255.000 0.604 NA   NA
 3615877 3615878 Pmen_2646 Pmen_2647     TRUE 0.933 27.000 0.411 NA   NA
 3615879 3615880 Pmen_2648 Pmen_2649     TRUE 0.657 54.000 0.222 NA   NA
 3615881 3615882 Pmen_R0047 Pmen_2650 ffs   FALSE 0.118 96.000 0.000 NA   NA
 3615883 3615884 Pmen_2651 Pmen_2652     FALSE 0.107 152.000 0.000 1.000   NA
 3615884 3615885 Pmen_2652 Pmen_2653     TRUE 0.857 0.000 0.000 1.000   NA
 3615886 3615887 Pmen_2654 Pmen_2655     TRUE 0.531 20.000 0.000 NA   NA
 3615887 3615888 Pmen_2655 Pmen_2656     TRUE 0.510 52.000 0.000 0.003 N NA
 3615888 3615889 Pmen_2656 Pmen_2657     TRUE 0.851 17.000 0.083 1.000 N NA
 3615889 3615890 Pmen_2657 Pmen_2658     TRUE 0.944 -13.000 0.125 NA   NA
 3615890 3615891 Pmen_2658 Pmen_2659     FALSE 0.127 75.000 0.000 NA   NA
 3615891 3615892 Pmen_2659 Pmen_2660     FALSE 0.129 70.000 0.000 NA   NA
 3615893 3615894 Pmen_2661 Pmen_2662     FALSE 0.276 139.000 0.000 0.061 N NA
 3615894 3615895 Pmen_2662 Pmen_2663     TRUE 0.791 5.000 0.000 NA   NA
 3615895 3615896 Pmen_2663 Pmen_2664     TRUE 0.972 -3.000 0.180 NA   NA
 3615896 3615897 Pmen_2664 Pmen_2665     TRUE 0.953 2.000 0.082 1.000   NA
 3615897 3615898 Pmen_2665 Pmen_2666     FALSE 0.384 31.000 0.000 NA   NA
 3615898 3615899 Pmen_2666 Pmen_2667     TRUE 0.764 -13.000 0.000 NA   NA
 3615899 3615900 Pmen_2667 Pmen_2668     TRUE 0.987 -3.000 0.000 0.026 Y NA
 3615900 3615901 Pmen_2668 Pmen_2669     TRUE 0.672 87.000 0.000 0.023 Y NA
 3615902 3615903 Pmen_2670 Pmen_2671     FALSE 0.414 106.000 0.131 1.000 N NA
 3615904 3615905 Pmen_2672 Pmen_2673     TRUE 0.453 190.000 0.000 0.067 Y NA
 3615905 3615906 Pmen_2673 Pmen_2674     TRUE 0.997 -3.000 1.000 NA N NA
 3615906 3615907 Pmen_2674 Pmen_2675     TRUE 0.932 79.000 0.600 NA Y NA
 3615909 3615910 Pmen_2677 Pmen_2678     TRUE 0.908 0.000 0.016 1.000 N NA
 3615911 3615912 Pmen_2679 Pmen_2680     FALSE 0.243 110.000 0.029 1.000   NA
 3615912 3615913 Pmen_2680 Pmen_2681     FALSE 0.048 216.000 0.000 1.000 N NA
 3615914 3615915 Pmen_2682 Pmen_2683     TRUE 0.999 0.000 0.859 0.000 Y NA
 3615915 3615916 Pmen_2683 Pmen_2684     FALSE 0.173 55.000 0.000 NA   NA
 3615916 3615917 Pmen_2684 Pmen_2685     FALSE 0.251 82.000 0.032 NA   NA
 3615918 3615919 Pmen_2686 Pmen_2687     FALSE 0.332 102.000 0.000 0.022   NA
 3615919 3615920 Pmen_2687 Pmen_2688     FALSE 0.132 100.000 0.000 1.000   NA
 3615921 3615922 Pmen_2689 Pmen_2690     TRUE 0.763 43.000 0.239 NA   NA
 3615922 3615923 Pmen_2690 Pmen_2691     TRUE 0.997 5.000 0.510 1.000 Y NA
 3615923 3615924 Pmen_2691 Pmen_2692     TRUE 0.953 50.000 0.544 1.000 Y NA
 3615924 3615925 Pmen_2692 Pmen_2693     TRUE 0.863 74.000 0.316 1.000 Y NA
 3615925 3615926 Pmen_2693 Pmen_2694     TRUE 0.901 194.000 0.600 0.061 Y NA
 3615926 3615927 Pmen_2694 Pmen_2695     TRUE 0.877 80.000 0.227 0.061 Y NA
 3615927 3615928 Pmen_2695 Pmen_2696     TRUE 0.587 287.000 0.250 0.061 Y NA
 3615929 3615930 Pmen_2697 Pmen_2698     TRUE 0.673 81.000 0.333 NA   NA
 3615930 3615931 Pmen_2698 Pmen_2699     TRUE 0.902 -3.000 0.017 NA   NA
 3615931 3615932 Pmen_2699 Pmen_2700     TRUE 0.971 -3.000 0.168 1.000   NA
 3615932 3615933 Pmen_2700 Pmen_2701     FALSE 0.224 87.000 0.020 1.000   NA
 3615933 3615934 Pmen_2701 Pmen_2702     TRUE 0.627 122.000 0.308 1.000 N NA
 3615934 3615935 Pmen_2702 Pmen_2703     TRUE 0.995 0.000 0.692 NA   NA
 3615935 3615936 Pmen_2703 Pmen_2704     TRUE 0.994 10.000 0.818 NA   NA
 3615938 3615939 Pmen_2706 Pmen_2707     TRUE 0.994 1.000 0.100 0.018 Y NA
 3615941 3615942 Pmen_2709 Pmen_2710     TRUE 0.918 3.000 0.033 1.000 N NA
 3615942 3615943 Pmen_2710 Pmen_2711     FALSE 0.409 140.000 0.153 1.000 N NA
 3615943 3615944 Pmen_2711 Pmen_2712     TRUE 0.601 90.000 0.262 1.000   NA
 3615944 3615945 Pmen_2712 Pmen_2713     FALSE 0.082 358.000 0.116 NA   NA
 3615945 3615946 Pmen_2713 Pmen_2714     TRUE 0.926 16.000 0.216 NA   NA
 3615946 3615947 Pmen_2714 Pmen_2715     TRUE 0.989 -3.000 0.383 1.000 N NA
 3615947 3615948 Pmen_2715 Pmen_2716     FALSE 0.171 117.000 0.007 1.000 N NA
 3615948 3615949 Pmen_2716 Pmen_2717   truA TRUE 0.821 25.000 0.139 1.000 N NA
 3615949 3615950 Pmen_2717 Pmen_2718 truA   TRUE 0.893 9.000 0.035 1.000 N NA
 3615950 3615951 Pmen_2718 Pmen_2719     FALSE 0.157 156.000 0.017 1.000 N NA
 3615951 3615952 Pmen_2719 Pmen_2720     TRUE 0.753 141.000 0.025 0.000 Y NA
 3615952 3615953 Pmen_2720 Pmen_2721     TRUE 0.895 58.000 0.196 0.036 Y NA
 3615953 3615954 Pmen_2721 Pmen_2722     TRUE 0.867 88.000 0.159 0.001 Y NA
 3615954 3615955 Pmen_2722 Pmen_2723     TRUE 0.997 12.000 0.463 0.000 Y NA
 3615956 3615957 Pmen_2724 Pmen_2725     TRUE 0.583 100.000 0.163 0.093 N NA
 3615958 3615959 Pmen_2726 Pmen_2727     FALSE 0.116 181.000 0.021 NA N NA
 3615963 3615964 Pmen_2731 Pmen_2732     TRUE 0.715 22.000 0.035 NA   NA
 3615964 3615965 Pmen_2732 Pmen_R0048     FALSE 0.062 185.000 0.000 NA   NA
 3615965 3615966 Pmen_R0048 Pmen_R0049     FALSE 0.202 49.000 0.000 NA   NA
 3615966 3615967 Pmen_R0049 Pmen_R0050     FALSE 0.209 48.000 0.000 NA   NA
 3615967 3615968 Pmen_R0050 Pmen_R0051     FALSE 0.202 49.000 0.000 NA   NA
 3615968 3615969 Pmen_R0051 Pmen_R0052     FALSE 0.196 50.000 0.000 NA   NA
 3615969 3615970 Pmen_R0052 Pmen_R0053     FALSE 0.150 61.000 0.000 NA   NA
 3615970 3615971 Pmen_R0053 Pmen_2733   gltX FALSE 0.067 178.000 0.000 NA   NA
 3615971 3615972 Pmen_2733 Pmen_2734 gltX   TRUE 0.441 35.000 0.004 1.000 N NA
 3615973 3615974 Pmen_2735 Pmen_2736     TRUE 0.973 -10.000 0.250 1.000   NA
 3615978 3615979 Pmen_2740 Pmen_2741     FALSE 0.020 339.000 0.000 1.000 N NA
 3615979 3615980 Pmen_2741 Pmen_2742     TRUE 0.633 81.000 0.292 NA   NA
 3615980 3615981 Pmen_2742 Pmen_2743     TRUE 0.729 110.000 0.444 NA   NA
 3615981 3615982 Pmen_2743 Pmen_2744   folE TRUE 0.793 86.000 0.545 NA   NA
 3615982 3615983 Pmen_2744 Pmen_2745 folE   FALSE 0.412 65.000 0.090 1.000 N NA
 3615984 3615985 Pmen_2746 Pmen_2747 ligA zipA TRUE 0.459 61.000 0.106 1.000 N NA
 3615985 3615986 Pmen_2747 Pmen_2748 zipA   TRUE 0.742 171.000 0.115 0.007 Y NA
 3615986 3615987 Pmen_2748 Pmen_2749     TRUE 0.855 7.000 0.010 1.000 N NA
 3615988 3615989 Pmen_2750 Pmen_2751     FALSE 0.018 387.000 0.000 1.000   NA
 3615989 3615990 Pmen_2751 Pmen_2752     TRUE 0.982 28.000 0.269 0.000 Y NA
 3615990 3615991 Pmen_2752 Pmen_2753     FALSE 0.024 282.000 0.000 NA N NA
 3615991 3615992 Pmen_2753 Pmen_2754     FALSE 0.114 171.000 0.013 NA N NA
 3615996 3615997 Pmen_2758 Pmen_2759     TRUE 0.957 -3.000 0.097 NA   NA
 3615997 3615998 Pmen_2759 Pmen_2760     TRUE 0.660 46.000 0.176 NA   NA
 3615998 3615999 Pmen_2760 Pmen_2761     TRUE 0.883 48.000 0.538 1.000   NA
 3615999 3616000 Pmen_2761 Pmen_2762     FALSE 0.026 300.000 0.000 1.000   NA
 3616000 3616001 Pmen_2762 Pmen_2763     FALSE 0.116 78.000 0.000 NA N NA
 3616001 3616002 Pmen_2763 Pmen_2764     FALSE 0.012 432.000 0.000 NA N NA
 3616003 3616004 Pmen_2765 Pmen_2766     FALSE 0.258 45.000 0.000 1.000   NA
 3616007 3616008 Pmen_2769 Pmen_2770     TRUE 0.762 103.000 0.495 1.000   NA
 3616008 3616009 Pmen_2770 Pmen_2771     TRUE 0.977 14.000 0.492 1.000 N NA
 3616009 3616010 Pmen_2771 Pmen_2772     FALSE 0.125 299.000 0.154 1.000 N NA
 3616010 3616011 Pmen_2772 Pmen_2773     TRUE 0.983 -3.000 0.026 1.000 Y NA
 3616011 3616012 Pmen_2773 Pmen_2774     FALSE 0.037 245.000 0.000 1.000 N NA
 3616012 3616013 Pmen_2774 Pmen_2775     FALSE 0.090 158.000 0.000 1.000 N NA
 3616014 3616015 Pmen_2776 Pmen_2777     TRUE 0.970 -3.000 0.174 NA N NA
 3616015 3616016 Pmen_2777 Pmen_2778     TRUE 0.960 5.000 0.174 NA N NA
 3616017 3616018 Pmen_2779 Pmen_2780     FALSE 0.121 84.000 0.000 NA   NA
 3616018 3616019 Pmen_2780 Pmen_2781     TRUE 0.524 83.000 0.000 1.000 Y NA
 3616020 3616021 Pmen_2782 Pmen_2783     TRUE 0.995 -3.000 0.667 NA   NA
 3616021 3616022 Pmen_2783 Pmen_2784     TRUE 0.997 -3.000 0.522 NA Y NA
 3616022 3616023 Pmen_2784 Pmen_2785     TRUE 0.992 -3.000 0.196 NA Y NA
 3616023 3616024 Pmen_2785 Pmen_2786     TRUE 0.999 -3.000 0.804 0.002 Y NA
 3616024 3616025 Pmen_2786 Pmen_2787     TRUE 0.997 -3.000 0.211 0.002 Y NA
 3616025 3616026 Pmen_2787 Pmen_2788     TRUE 0.987 -3.000 0.344 1.000 N NA
 3616026 3616027 Pmen_2788 Pmen_2789     TRUE 0.992 -3.000 0.501 1.000 N NA
 3616027 3616028 Pmen_2789 Pmen_2790     TRUE 0.809 88.000 0.051 0.001 Y NA
 3616028 3616029 Pmen_2790 Pmen_2791     TRUE 0.994 -3.000 0.074 0.002 Y NA
 3616030 3616031 Pmen_2792 Pmen_2793     TRUE 0.984 -3.000 0.286 1.000   NA
 3616032 3616033 Pmen_2794 Pmen_2795     FALSE 0.233 159.000 0.060 NA   NA
 3616033 3616034 Pmen_2795 Pmen_2796     TRUE 0.996 0.000 0.743 NA   NA
 3616034 3616035 Pmen_2796 Pmen_2797     TRUE 0.940 96.000 0.886 0.011   NA
 3616035 3616036 Pmen_2797 Pmen_2798     TRUE 0.753 88.000 0.454 1.000   NA
 3616036 3616037 Pmen_2798 Pmen_2799     TRUE 0.515 83.000 0.199 1.000 N NA
 3616037 3616038 Pmen_2799 Pmen_2800   motC TRUE 0.985 13.000 0.248 1.000 Y NA
 3616038 3616039 Pmen_2800 Pmen_2801 motC   TRUE 0.943 26.000 0.153 1.000 Y NA
 3616039 3616040 Pmen_2801 Pmen_2802     TRUE 0.964 43.000 0.327 0.014 Y NA
 3616040 3616041 Pmen_2802 Pmen_2803     TRUE 0.989 13.000 0.341 1.000 Y NA
 3616041 3616042 Pmen_2803 Pmen_2804     TRUE 0.989 20.000 0.516 1.000 Y NA
 3616042 3616043 Pmen_2804 Pmen_2805   fliA TRUE 0.916 33.000 0.283 0.092 N NA
 3616043 3616044 Pmen_2805 Pmen_2806 fliA   TRUE 0.992 -3.000 0.482 1.000 N NA
 3616044 3616045 Pmen_2806 Pmen_2807   flhF TRUE 0.568 91.000 0.241 1.000 N NA
 3616045 3616046 Pmen_2807 Pmen_2808 flhF flhA TRUE 0.982 12.000 0.178 1.000 Y NA
 3616046 3616047 Pmen_2808 Pmen_2809 flhA flhB TRUE 0.873 85.000 0.205 0.010 Y NA
 3616047 3616048 Pmen_2809 Pmen_2810 flhB fliR TRUE 0.983 10.000 0.129 1.000 Y NA
 3616048 3616049 Pmen_2810 Pmen_2811 fliR fliQ TRUE 0.999 14.000 1.000 0.003 Y NA
 3616049 3616050 Pmen_2811 Pmen_2812 fliQ fliP TRUE 0.999 12.000 1.000 0.010 Y NA
 3616050 3616051 Pmen_2812 Pmen_2813 fliP   TRUE 0.987 0.000 0.061 1.000 Y NA
 3616051 3616052 Pmen_2813 Pmen_2814   fliN TRUE 0.996 3.000 0.443 1.000 Y NA
 3616052 3616053 Pmen_2814 Pmen_2815 fliN fliM TRUE 0.990 40.000 0.741 0.002 Y NA
 3616053 3616054 Pmen_2815 Pmen_2816 fliM fliL TRUE 0.988 14.000 0.171 0.002 Y NA
 3616054 3616055 Pmen_2816 Pmen_2817 fliL   FALSE 0.399 231.000 0.075 1.000 Y NA
 3616055 3616056 Pmen_2817 Pmen_2818     FALSE 0.358 65.000 0.069 NA N NA
 3616056 3616057 Pmen_2818 Pmen_2819     TRUE 0.994 0.000 0.250 NA Y NA
 3616057 3616058 Pmen_2819 Pmen_2820     TRUE 0.996 3.000 0.429 NA Y NA
 3616058 3616059 Pmen_2820 Pmen_2821   fliJ FALSE 0.209 84.000 0.022 NA N NA
 3616059 3616060 Pmen_2821 Pmen_2822 fliJ fliI TRUE 0.957 26.000 0.070 0.011 Y NA
 3616060 3616061 Pmen_2822 Pmen_2823 fliI fliH TRUE 0.992 -10.000 0.115 0.006 Y NA
 3616061 3616062 Pmen_2823 Pmen_2824 fliH fliG TRUE 0.710 269.000 0.320 0.006 Y NA
 3616062 3616063 Pmen_2824 Pmen_2825 fliG fliF TRUE 0.994 -7.000 0.189 0.009 Y NA
 3616063 3616064 Pmen_2825 Pmen_2826 fliF fliE TRUE 0.999 11.000 0.910 0.009 Y NA
 3616064 3616065 Pmen_2826 Pmen_2827 fliE   TRUE 0.534 200.000 0.446 1.000 N NA
 3616065 3616066 Pmen_2827 Pmen_2828     TRUE 0.999 4.000 0.679 0.087 Y NA
 3616066 3616067 Pmen_2828 Pmen_2829     TRUE 0.896 151.000 0.377 0.087 Y NA
 3616067 3616068 Pmen_2829 Pmen_2830     FALSE 0.092 260.000 0.056 NA   NA
 3616068 3616069 Pmen_2830 Pmen_2831   fliS TRUE 0.949 25.000 0.478 NA   NA
 3616069 3616070 Pmen_2831 Pmen_2832 fliS   TRUE 0.854 73.000 0.130 0.004 Y NA
 3616070 3616071 Pmen_2832 Pmen_2833     TRUE 0.994 0.000 0.083 0.004 Y NA
 3616071 3616072 Pmen_2833 Pmen_2834     TRUE 0.721 80.000 0.117 NA Y NA
 3616072 3616073 Pmen_2834 Pmen_2835     TRUE 0.591 73.000 0.018 NA Y NA
 3616073 3616074 Pmen_2835 Pmen_2836     FALSE 0.034 255.000 0.000 1.000 N NA
 3616074 3616075 Pmen_2836 Pmen_2837     TRUE 0.983 -7.000 0.069 1.000 Y NA
 3616075 3616076 Pmen_2837 Pmen_2838     TRUE 0.853 -24.000 0.017 1.000 N NA
 3616076 3616077 Pmen_2838 Pmen_2839     TRUE 0.959 -3.000 0.017 0.061 N NA
 3616077 3616078 Pmen_2839 Pmen_2840   flgL FALSE 0.377 141.000 0.118 1.000   NA
 3616078 3616079 Pmen_2840 Pmen_2841 flgL flgK TRUE 0.587 69.000 0.057 0.002   NA
 3616079 3616080 Pmen_2841 Pmen_2842 flgK flgJ TRUE 0.999 10.000 0.705 0.004 Y NA
 3616080 3616081 Pmen_2842 Pmen_2843 flgJ flgI TRUE 0.994 15.000 0.405 0.011 Y NA
 3616081 3616082 Pmen_2843 Pmen_2844 flgI flgH TRUE 0.715 183.000 0.128 0.011 Y NA
 3616082 3616083 Pmen_2844 Pmen_2845 flgH flgG TRUE 0.986 40.000 0.632 0.009 Y NA
 3616083 3616084 Pmen_2845 Pmen_2846 flgG flgF TRUE 0.943 47.000 0.207 0.001 Y NA
 3616084 3616085 Pmen_2846 Pmen_2847 flgF flgE TRUE 0.856 255.000 0.594 0.005 Y NA
 3616085 3616086 Pmen_2847 Pmen_2848 flgE flgD TRUE 0.988 37.000 0.875 NA Y NA
 3616086 3616087 Pmen_2848 Pmen_2849 flgD flgC TRUE 0.963 22.000 0.207 NA Y NA
 3616087 3616088 Pmen_2849 Pmen_2850 flgC flgB TRUE 0.998 12.000 0.800 0.005 Y NA
 3616088 3616089 Pmen_2850 Pmen_2851 flgB   FALSE 0.232 323.000 0.059 1.000 Y NA
 3616089 3616090 Pmen_2851 Pmen_2852     TRUE 0.993 25.000 0.838 1.000 Y NA
 3616091 3616092 Pmen_2853 Pmen_2854 flgA   TRUE 0.858 134.000 0.371 NA Y NA
 3616092 3616093 Pmen_2854 Pmen_2855     TRUE 0.959 51.000 0.361 0.003 Y NA
 3616093 3616094 Pmen_2855 Pmen_2856     FALSE 0.409 95.000 0.121 1.000 N NA
 3616095 3616096 Pmen_2857 Pmen_2858     TRUE 0.842 52.000 0.462 1.000   NA
 3616097 3616098 Pmen_2859 Pmen_2860     FALSE 0.095 155.000 0.000 1.000 N NA
 3616099 3616100 Pmen_2861 Pmen_2862     TRUE 0.498 22.000 0.000 NA   NA
 3616100 3616101 Pmen_2862 Pmen_2863     TRUE 0.834 -3.000 0.000 NA   NA
 3616101 3616102 Pmen_2863 Pmen_2864     TRUE 0.437 26.000 0.000 NA   NA
 3616102 3616103 Pmen_2864 Pmen_2865     FALSE 0.119 89.000 0.000 NA   NA
 3616103 3616104 Pmen_2865 Pmen_2866     TRUE 0.954 11.000 0.000 1.000 Y NA
 3616104 3616105 Pmen_2866 Pmen_2867     TRUE 0.656 71.000 0.000 0.097 Y NA
 3616105 3616106 Pmen_2867 Pmen_2868     FALSE 0.036 249.000 0.000 1.000 N NA
 3616106 3616107 Pmen_2868 Pmen_2869     TRUE 0.930 -10.000 0.000 0.013 N NA
 3616107 3616108 Pmen_2869 Pmen_2870     TRUE 0.989 -3.000 0.000 0.002 Y NA
 3616108 3616109 Pmen_2870 Pmen_2871     TRUE 0.587 58.000 0.000 NA Y NA
 3616109 3616110 Pmen_2871 Pmen_2872     FALSE 0.328 186.000 0.000 NA Y NA
 3616110 3616111 Pmen_2872 Pmen_2873     TRUE 0.838 1.000 0.000 1.000 N NA
 3616111 3616112 Pmen_2873 Pmen_R0054     FALSE 0.047 213.000 0.000 NA   NA
 3616112 3616113 Pmen_R0054 Pmen_2874     FALSE 0.099 147.000 0.000 NA   NA
 3616113 3616114 Pmen_2874 Pmen_2875     FALSE 0.270 132.000 0.044 1.000   NA
 3616114 3616115 Pmen_2875 Pmen_2876     TRUE 0.506 80.000 0.059 0.052 N NA
 3616117 3616118 Pmen_2878 Pmen_2879 phnP   TRUE 0.967 -9.000 0.214 NA   NA
 3616118 3616119 Pmen_2879 Pmen_2880     TRUE 0.994 0.000 0.235 NA Y NA
 3616119 3616120 Pmen_2880 Pmen_2881     TRUE 0.993 -10.000 0.320 1.000 Y NA
 3616120 3616121 Pmen_2881 Pmen_2882   phnK TRUE 0.954 182.000 0.859 0.017 Y NA
 3616121 3616122 Pmen_2882 Pmen_2883 phnK   TRUE 0.999 -3.000 0.883 1.000 Y NA
 3616122 3616123 Pmen_2883 Pmen_2884     TRUE 0.999 0.000 0.880 1.000 Y NA
 3616123 3616124 Pmen_2884 Pmen_2885   phnH TRUE 1.000 0.000 0.960 0.002 Y NA
 3616124 3616125 Pmen_2885 Pmen_2886 phnH   TRUE 1.000 0.000 0.967 0.002 Y NA
 3616125 3616126 Pmen_2886 Pmen_2887     TRUE 0.995 0.000 0.691 1.000 N NA
 3616126 3616127 Pmen_2887 Pmen_2888     TRUE 0.866 21.000 0.158 1.000 N NA
 3616127 3616128 Pmen_2888 Pmen_2889     TRUE 0.941 64.000 0.330 0.001 Y NA
 3616128 3616129 Pmen_2889 Pmen_2890     TRUE 0.954 54.000 0.337 0.002 Y NA
 3616131 3616132 Pmen_2892 Pmen_2893     TRUE 0.999 11.000 0.886 0.001 Y NA
 3616132 3616133 Pmen_2893 Pmen_2894     TRUE 0.995 25.000 0.720 0.001 Y NA
 3616133 3616134 Pmen_2894 Pmen_2895     FALSE 0.088 160.000 0.000 1.000 N NA
 3616135 3616136 Pmen_2896 Pmen_2897     TRUE 0.859 12.000 0.040 NA   NA
 3616136 3616137 Pmen_2897 Pmen_2898     FALSE 0.393 30.000 0.000 NA   NA
 3616140 3616141 Pmen_R0055 Pmen_R0056     FALSE 0.129 71.000 0.000 NA   NA
 3616141 3616142 Pmen_R0056 Pmen_R0057     FALSE 0.232 45.000 0.000 NA   NA
 3616142 3616143 Pmen_R0057 Pmen_R0058     FALSE 0.128 72.000 0.000 NA   NA
 3616143 3616144 Pmen_R0058 Pmen_2901     FALSE 0.147 62.000 0.000 NA   NA
 3616144 3616145 Pmen_2901 Pmen_2902     FALSE 0.199 189.000 0.079 1.000 N NA
 3616145 3616146 Pmen_2902 Pmen_2903   alaS FALSE 0.354 67.000 0.065 1.000 N NA
 3616146 3616147 Pmen_2903 Pmen_2904 alaS   FALSE 0.195 73.000 0.009 1.000 N NA
 3616147 3616148 Pmen_2904 Pmen_2905     TRUE 0.519 159.000 0.031 1.000 Y NA
 3616148 3616149 Pmen_2905 Pmen_2906     TRUE 0.988 18.000 0.909 NA   NA
 3616149 3616150 Pmen_2906 Pmen_2907     TRUE 0.741 26.000 0.072 NA   NA
 3616150 3616151 Pmen_2907 Pmen_2908     TRUE 0.986 0.000 0.306 1.000 N NA
 3616151 3616152 Pmen_2908 Pmen_2909     TRUE 0.566 65.000 0.205 1.000 N NA
 3616152 3616153 Pmen_2909 Pmen_2910     TRUE 0.989 58.000 1.000 0.000 Y NA
 3616153 3616154 Pmen_2910 Pmen_2911   argD TRUE 0.907 134.000 0.533 1.000 Y NA
 3616154 3616155 Pmen_2911 Pmen_2912 argD   FALSE 0.015 427.000 0.000 1.000 N NA
 3616155 3616156 Pmen_2912 Pmen_2913     TRUE 0.784 76.000 0.500 1.000 N NA
 3616156 3616157 Pmen_2913 Pmen_2914     TRUE 0.959 28.000 0.250 1.000 Y NA
 3616157 3616158 Pmen_2914 Pmen_2915     TRUE 0.997 -3.000 0.250 0.011 Y NA
 3616158 3616159 Pmen_2915 Pmen_2916     FALSE 0.396 220.000 0.000 0.055 Y NA
 3616159 3616160 Pmen_2916 Pmen_2917     FALSE 0.014 456.000 0.000 1.000 N NA
 3616160 3616161 Pmen_2917 Pmen_2918     TRUE 0.999 3.000 0.811 1.000 Y NA
 3616161 3616162 Pmen_2918 Pmen_2919     TRUE 0.989 -3.000 0.020 0.060 Y NA
 3616162 3616163 Pmen_2919 Pmen_2920     TRUE 0.982 -3.000 0.024 1.000 Y NA
 3616163 3616164 Pmen_2920 Pmen_2921     TRUE 0.968 -3.000 0.012 0.003   NA
 3616164 3616165 Pmen_2921 Pmen_2922     TRUE 0.971 -3.000 0.022 0.003   NA
 3616165 3616166 Pmen_2922 Pmen_2923     TRUE 0.992 -28.000 0.425 0.003   NA
 3616166 3616167 Pmen_2923 Pmen_2924     TRUE 0.999 4.000 0.599 0.003 Y NA
 3616167 3616168 Pmen_2924 Pmen_2925     TRUE 0.995 23.000 0.653 0.003 Y NA
 3616169 3616170 Pmen_2926 Pmen_2927     TRUE 0.866 5.000 0.013 NA   NA
 3616172 3616173 Pmen_2929 Pmen_2930     TRUE 0.577 56.000 0.179 NA   NA
 3616173 3616174 Pmen_2930 Pmen_2931     TRUE 0.991 -3.000 0.484 NA   NA
 3616174 3616175 Pmen_2931 Pmen_2932     TRUE 0.980 -7.000 0.314 NA   NA
 3616175 3616176 Pmen_2932 Pmen_2933     TRUE 0.970 -3.000 0.171 NA   NA
 3616176 3616177 Pmen_2933 Pmen_2934     TRUE 0.981 -3.000 0.258 NA   NA
 3616178 3616179 Pmen_2935 Pmen_2936     TRUE 0.976 19.000 0.409 0.060   NA
 3616179 3616180 Pmen_2936 Pmen_2937     FALSE 0.199 194.000 0.091 NA   NA
 3616180 3616181 Pmen_2937 Pmen_2938     TRUE 0.832 69.000 0.600 NA   NA
 3616181 3616182 Pmen_2938 Pmen_2939     FALSE 0.013 446.000 0.000 NA   NA
 3616182 3616183 Pmen_2939 Pmen_2940     FALSE 0.431 52.000 0.059 NA   NA
 3616183 3616184 Pmen_2940 Pmen_2941     TRUE 0.788 33.000 0.168 NA   NA
 3616184 3616185 Pmen_2941 Pmen_2942     FALSE 0.424 80.000 0.124 NA   NA
 3616185 3616186 Pmen_2942 Pmen_2943     TRUE 0.966 -3.000 0.131 1.000   NA
 3616186 3616187 Pmen_2943 Pmen_2944   ppnK TRUE 0.938 1.000 0.045 1.000   NA
 3616189 3616190 Pmen_2946 Pmen_2947     TRUE 0.704 23.000 0.040 NA N NA
 3616190 3616191 Pmen_2947 Pmen_2948     TRUE 0.952 3.000 0.099 NA   NA
 3616193 3616194 Pmen_2950 Pmen_2951     FALSE 0.327 64.000 0.047 NA   NA
 3616195 3616196 Pmen_2952 Pmen_2953     TRUE 0.852 -3.000 0.000 1.000   NA
 3616197 3616198 Pmen_R0059 Pmen_R0060     FALSE 0.116 101.000 0.000 NA   NA
 3616198 3616199 Pmen_R0060 Pmen_R0061     FALSE 0.367 33.000 0.000 NA   NA
 3616199 3616200 Pmen_R0061 Pmen_2954     FALSE 0.118 97.000 0.000 NA   NA
 3616201 3616202 Pmen_2955 Pmen_2956     TRUE 0.768 126.000 0.514 1.000 N NA
 3616202 3616203 Pmen_2956 Pmen_2957     TRUE 0.749 112.000 0.471 1.000 N NA
 3616203 3616204 Pmen_2957 Pmen_2958     FALSE 0.260 185.000 0.125 1.000 N NA
 3616204 3616205 Pmen_2958 Pmen_2959     TRUE 0.728 21.000 0.036 NA   NA
 3616206 3616207 Pmen_2960 Pmen_2961     FALSE 0.291 120.000 0.053 1.000 N NA
 3616207 3616208 Pmen_2961 Pmen_2962     FALSE 0.012 460.000 0.000 NA N NA
 3616209 3616210 Pmen_2963 Pmen_2964     FALSE 0.222 167.000 0.066 NA   NA
 3616210 3616211 Pmen_2964 Pmen_2965     FALSE 0.377 140.000 0.125 NA   NA
 3616211 3616212 Pmen_2965 Pmen_2966     FALSE 0.233 62.000 0.014 NA   NA
 3616213 3616214 Pmen_2967 Pmen_2968     TRUE 0.803 4.000 0.000 NA   NA
 3616214 3616215 Pmen_2968 Pmen_2969     FALSE 0.127 75.000 0.000 NA   NA
 3616215 3616216 Pmen_2969 Pmen_2970     FALSE 0.286 145.000 0.000 0.037 N NA
 3616216 3616217 Pmen_2970 Pmen_2971     TRUE 0.508 102.000 0.000 1.000 Y NA
 3616218 3616219 Pmen_2972 Pmen_2973     FALSE 0.107 134.000 0.000 NA   NA
 3616219 3616220 Pmen_2973 Pmen_2974     FALSE 0.124 81.000 0.000 NA   NA
 3616221 3616222 Pmen_2975 Pmen_2976     TRUE 0.975 -3.000 0.000 1.000 Y NA
 3616222 3616223 Pmen_2976 Pmen_2977     TRUE 0.532 66.000 0.180 1.000   NA
 3616223 3616224 Pmen_2977 Pmen_2978     FALSE 0.306 114.000 0.000 0.060   NA
 3616225 3616226 Pmen_2979 Pmen_2980     TRUE 0.746 30.000 0.109 NA N NA
 3616226 3616227 Pmen_2980 Pmen_2981     TRUE 0.958 -3.000 0.106 NA N NA
 3616227 3616228 Pmen_2981 Pmen_2982     TRUE 0.996 12.000 0.643 NA Y NA
 3616228 3616229 Pmen_2982 Pmen_2983     TRUE 0.983 10.000 0.143 NA Y NA
 3616231 3616232 Pmen_2985 Pmen_2986     FALSE 0.114 117.000 0.000 NA   NA
 3616233 3616234 Pmen_2987 Pmen_2988     FALSE 0.151 150.000 0.011 NA   NA
 3616235 3616236 Pmen_2989 Pmen_2990     TRUE 0.980 -3.000 0.112 0.054   NA
 3616236 3616237 Pmen_2990 Pmen_2991     TRUE 0.994 3.000 0.657 NA   NA
 3616237 3616238 Pmen_2991 Pmen_2992     TRUE 0.838 0.000 0.000 NA   NA
 3616239 3616240 Pmen_2993 Pmen_2994     TRUE 0.977 -3.000 0.217 NA   NA
 3616240 3616241 Pmen_2994 Pmen_2995     FALSE 0.366 82.000 0.087 NA   NA
 3616242 3616243 Pmen_2996 Pmen_2997   purN TRUE 0.997 0.000 0.230 0.002 Y NA
 3616243 3616244 Pmen_2997 Pmen_2998 purN   TRUE 0.917 9.000 0.065 NA   NA
 3616246 3616247 Pmen_3000 Pmen_3001     TRUE 0.854 9.000 0.016 NA   NA
 3616247 3616248 Pmen_3001 Pmen_3002     TRUE 0.945 -3.000 0.065 NA   NA
 3616248 3616249 Pmen_3002 Pmen_3003     TRUE 0.765 99.000 0.500 NA   NA
 3616249 3616250 Pmen_3003 Pmen_3004     FALSE 0.221 74.000 0.024 NA N NA
 3616250 3616251 Pmen_3004 Pmen_3005     TRUE 0.819 13.000 0.030 NA   NA
 3616251 3616252 Pmen_3005 Pmen_3006     FALSE 0.107 134.000 0.000 NA   NA
 3616257 3616258 Pmen_3011 Pmen_3012     FALSE 0.205 87.000 0.019 NA   NA
 3616260 3616261 Pmen_3014 Pmen_3015 recX recA TRUE 0.932 21.000 0.296 1.000   NA
 3616261 3616262 Pmen_3015 Pmen_3016 recA   FALSE 0.350 88.000 0.082 NA   NA
 3616266 3616267 Pmen_3020 Pmen_3021     FALSE 0.347 102.000 0.081 1.000 N NA
 3616267 3616268 Pmen_3021 Pmen_3022     FALSE 0.407 49.000 0.040 NA   NA
 3616268 3616269 Pmen_3022 Pmen_3023   pcm TRUE 0.680 27.000 0.046 NA   NA
 3616269 3616270 Pmen_3023 Pmen_3024 pcm surE TRUE 0.989 0.000 0.353 1.000   NA
 3616270 3616271 Pmen_3024 Pmen_3025 surE truD TRUE 0.970 -12.000 0.235 1.000   NA
 3616271 3616272 Pmen_3025 Pmen_3026 truD ispF TRUE 0.972 -3.000 0.173 1.000   NA
 3616272 3616273 Pmen_3026 Pmen_3027 ispF   FALSE 0.189 127.000 0.012 1.000   NA
 3616273 3616274 Pmen_3027 Pmen_3028     TRUE 0.803 113.000 0.567 1.000   NA
 3616275 3616276 Pmen_3029 Pmen_3030     TRUE 0.961 4.000 0.160 NA   NA
 3616277 3616278 Pmen_3031 Pmen_3032 ispD   TRUE 0.973 -3.000 0.185 1.000 N NA
 3616278 3616279 Pmen_3032 Pmen_3033   eno TRUE 0.543 130.000 0.241 1.000 N NA
 3616279 3616280 Pmen_3033 Pmen_3034 eno   FALSE 0.369 148.000 0.125 1.000 N NA
 3616280 3616281 Pmen_3034 Pmen_3035     TRUE 0.958 4.000 0.138 1.000 N NA
 3616281 3616282 Pmen_3035 Pmen_3036     FALSE 0.166 151.000 0.016 1.000 N NA
 3616282 3616283 Pmen_3036 Pmen_3037     FALSE 0.380 140.000 0.123 1.000 N NA
 3616283 3616284 Pmen_3037 Pmen_3038   dnaE FALSE 0.399 121.000 0.122 1.000 N NA
 3616284 3616285 Pmen_3038 Pmen_3039 dnaE rnhB TRUE 0.727 72.000 0.104 1.000 Y NA
 3616285 3616286 Pmen_3039 Pmen_3040 rnhB lpxB TRUE 0.974 0.000 0.186 1.000 N NA
 3616286 3616287 Pmen_3040 Pmen_3041 lpxB   TRUE 0.993 6.000 0.289 1.000 Y NA
 3616287 3616288 Pmen_3041 Pmen_3042   fabZ TRUE 0.997 -3.000 0.850 1.000 N NA
 3616288 3616289 Pmen_3042 Pmen_3043 fabZ lpxD TRUE 0.932 48.000 0.796 1.000 N NA
 3616289 3616290 Pmen_3043 Pmen_3044 lpxD   TRUE 0.999 3.000 0.814 1.000 Y NA
 3616290 3616291 Pmen_3044 Pmen_3045     TRUE 0.805 45.000 0.050 1.000 Y NA
 3616291 3616292 Pmen_3045 Pmen_3046     TRUE 0.576 88.000 0.014 1.000 Y NA
 3616292 3616293 Pmen_3046 Pmen_3047     TRUE 0.976 18.000 0.568 1.000 N NA
 3616293 3616294 Pmen_3047 Pmen_3048     TRUE 0.996 -3.000 0.372 1.000 Y NA
 3616294 3616295 Pmen_3048 Pmen_3049     TRUE 0.997 0.000 0.400 1.000 Y NA
 3616295 3616296 Pmen_3049 Pmen_3050   frr TRUE 0.960 19.000 0.409 1.000 N NA
 3616296 3616297 Pmen_3050 Pmen_3051 frr pyrH TRUE 0.923 -3.000 0.030 1.000 N NA
 3616297 3616298 Pmen_3051 Pmen_3052 pyrH tsf FALSE 0.114 184.000 0.017 1.000 N NA
 3616298 3616299 Pmen_3052 Pmen_3053 tsf rpsB TRUE 0.943 130.000 0.748 1.000 Y NA
 3616300 3616301 Pmen_3054 Pmen_3055   glnD TRUE 0.836 89.000 0.651 1.000 N NA
 3616301 3616302 Pmen_3055 Pmen_3056 glnD   TRUE 0.818 38.000 0.257 1.000 N NA
 3616304 3616305 Pmen_3058 Pmen_3059     TRUE 0.626 37.000 0.069 1.000 N NA
 3616305 3616306 Pmen_3059 Pmen_3060     TRUE 0.777 150.000 0.244 1.000 Y NA
 3616306 3616307 Pmen_3060 Pmen_3061     TRUE 0.961 -3.000 0.116 NA   NA
 3616308 3616309 Pmen_3062 Pmen_3063     FALSE 0.202 49.000 0.000 NA   NA
 3616309 3616310 Pmen_3063 Pmen_3064     FALSE 0.107 144.000 0.000 1.000 N NA
 3616311 3616312 Pmen_3065 Pmen_3066     FALSE 0.138 68.000 0.000 1.000 N NA
 3616312 3616313 Pmen_3066 Pmen_3067     TRUE 0.926 -3.000 0.033 1.000 N NA
 3616313 3616314 Pmen_3067 Pmen_3068     TRUE 0.936 6.000 0.083 NA   NA
 3616315 3616316 Pmen_3069 Pmen_3070     FALSE 0.024 296.000 0.000 NA   NA
 3616316 3616317 Pmen_3070 Pmen_3071     FALSE 0.244 92.000 0.032 NA   NA
 3616317 3616318 Pmen_3071 Pmen_3072     TRUE 0.984 10.000 0.435 NA   NA
 3616318 3616319 Pmen_3072 Pmen_3073     TRUE 0.990 -3.000 0.426 1.000   NA
 3616322 3616323 Pmen_3076 Pmen_3077     FALSE 0.012 536.000 0.000 NA   NA
 3616323 3616324 Pmen_3077 Pmen_3078     FALSE 0.126 78.000 0.000 NA   NA
 3616324 3616325 Pmen_3078 Pmen_3079     FALSE 0.017 372.000 0.000 NA   NA
 3616325 3616326 Pmen_3079 Pmen_3080     TRUE 0.830 1.000 0.000 NA   NA
 3616326 3616327 Pmen_3080 Pmen_3081     FALSE 0.119 91.000 0.000 NA   NA
 3616327 3616328 Pmen_3081 Pmen_3082     FALSE 0.012 517.000 0.000 NA   NA
 3616328 3616329 Pmen_3082 Pmen_3083     FALSE 0.011 686.000 0.000 NA   NA
 3616330 3616331 Pmen_3084 Pmen_3085     TRUE 0.531 20.000 0.000 NA   NA
 3616332 3616333 Pmen_3086 Pmen_3087     FALSE 0.153 60.000 0.000 NA   NA
 3616333 3616334 Pmen_3087 Pmen_3088     FALSE 0.124 81.000 0.000 NA   NA
 3616334 3616335 Pmen_3088 Pmen_3089     FALSE 0.092 154.000 0.000 NA   NA
 3616335 3616336 Pmen_3089 Pmen_3090     FALSE 0.084 159.000 0.000 NA   NA
 3616336 3616337 Pmen_3090 Pmen_3091     FALSE 0.063 184.000 0.000 NA   NA
 3616337 3616338 Pmen_3091 Pmen_3092     FALSE 0.056 209.000 0.000 1.000   NA
 3616340 3616341 Pmen_3094 Pmen_3095     TRUE 0.492 198.000 0.385 1.000 N NA
 3616341 3616342 Pmen_3095 Pmen_3096     FALSE 0.044 226.000 0.000 1.000 N NA
 3616343 3616344 Pmen_3097 Pmen_3098     FALSE 0.177 273.000 0.000 NA Y NA
 3616344 3616345 Pmen_3098 Pmen_3099     FALSE 0.326 37.000 0.000 1.000 N NA
 3616346 3616347 Pmen_3100 Pmen_3101     FALSE 0.021 352.000 0.000 1.000   NA
 3616347 3616348 Pmen_3101 Pmen_3102     FALSE 0.106 137.000 0.000 NA   NA
 3616348 3616349 Pmen_3102 Pmen_3103     TRUE 0.983 9.000 0.395 NA   NA
 3616349 3616350 Pmen_3103 Pmen_3104     TRUE 0.894 -3.000 0.012 NA   NA
 3616353 3616354 Pmen_3107 Pmen_3108     FALSE 0.187 52.000 0.000 NA   NA
 3616354 3616355 Pmen_3108 Pmen_3109   acsA FALSE 0.117 98.000 0.000 NA   NA
 3616358 3616359 Pmen_3112 Pmen_3113 phhA phhB TRUE 0.502 122.000 0.203 1.000 N NA
 3616359 3616360 Pmen_3113 Pmen_3114 phhB   TRUE 0.931 -3.000 0.037 1.000 N NA
 3616360 3616361 Pmen_3114 Pmen_3115     FALSE 0.076 172.000 0.000 1.000 N NA
 3616361 3616362 Pmen_3115 Pmen_3116     TRUE 0.993 10.000 0.521 0.054 N NA
 3616362 3616363 Pmen_3116 Pmen_3117     TRUE 0.997 -3.000 0.489 1.000 Y NA
 3616363 3616364 Pmen_3117 Pmen_3118     TRUE 0.998 0.000 0.542 1.000 Y NA
 3616364 3616365 Pmen_3118 Pmen_3119     FALSE 0.163 195.000 0.000 0.054 N NA
 3616365 3616366 Pmen_3119 Pmen_3120     TRUE 0.727 91.000 0.125 1.000 Y NA
 3616367 3616368 Pmen_3121 Pmen_3122     FALSE 0.106 137.000 0.000 NA   NA
 3616368 3616369 Pmen_3122 Pmen_3123     TRUE 0.900 14.000 0.123 NA   NA
 3616369 3616370 Pmen_3123 Pmen_3124     FALSE 0.109 129.000 0.000 NA   NA
 3616370 3616371 Pmen_3124 Pmen_3125     FALSE 0.051 199.000 0.000 NA   NA
 3616371 3616372 Pmen_3125 Pmen_3126     TRUE 0.964 -3.000 0.133 NA   NA
 3616372 3616373 Pmen_3126 Pmen_3127     FALSE 0.123 130.000 0.000 1.000   NA
 3616373 3616374 Pmen_3127 Pmen_3128     TRUE 0.715 89.000 0.111 1.000 Y NA
 3616374 3616375 Pmen_3128 Pmen_3129     FALSE 0.027 285.000 0.000 1.000 N NA
 3616375 3616376 Pmen_3129 Pmen_3130   malG FALSE 0.221 146.000 0.033 1.000 N NA
 3616376 3616377 Pmen_3130 Pmen_3131 malG malF TRUE 0.998 11.000 0.814 0.054 Y NA
 3616377 3616378 Pmen_3131 Pmen_3132 malF malE TRUE 0.769 62.000 0.120 1.000 Y NA
 3616379 3616380 Pmen_3133 Pmen_3134 malS   FALSE 0.053 197.000 0.000 NA   NA
 3616381 3616382 Pmen_3135 Pmen_3136     FALSE 0.102 150.000 0.000 1.000 N NA
 3616383 3616384 Pmen_3137 Pmen_3138 lamB   TRUE 0.762 126.000 0.500 1.000   NA
 3616385 3616386 Pmen_3139 Pmen_3140     FALSE 0.066 190.000 0.000 1.000   NA
 3616386 3616387 Pmen_3140 Pmen_3141     FALSE 0.183 115.000 0.008 1.000   NA
 3616387 3616388 Pmen_3141 Pmen_3142     TRUE 0.986 2.000 0.064 1.000 Y NA
 3616388 3616389 Pmen_3142 Pmen_3143     TRUE 0.987 -13.000 0.163 1.000 Y NA
 3616390 3616391 Pmen_3144 Pmen_3145     FALSE 0.068 188.000 0.000 1.000   NA
 3616391 3616392 Pmen_3145 Pmen_3146     FALSE 0.311 145.000 0.074 1.000   NA
 3616395 3616396 Pmen_3149 Pmen_3150     TRUE 0.971 -22.000 0.024 1.000 Y NA
 3616397 3616398 Pmen_3151 Pmen_3152     TRUE 0.707 468.000 0.564 0.000 Y NA
 3616398 3616399 Pmen_3152 Pmen_3153     FALSE 0.129 110.000 0.000 1.000   NA
 3616399 3616400 Pmen_3153 Pmen_3154     FALSE 0.010 1185.000 0.000 NA   NA
 3616400 3616401 Pmen_3154 Pmen_3155     FALSE 0.021 323.000 0.000 NA   NA
 3616402 3616403 Pmen_3156 Pmen_3157     FALSE 0.094 153.000 0.000 NA   NA
 3616403 3616404 Pmen_3157 Pmen_3158     TRUE 0.905 -16.000 0.050 NA   NA
 3616404 3616405 Pmen_3158 Pmen_3159     FALSE 0.042 225.000 0.000 NA   NA
 3616408 3616409 Pmen_3162 Pmen_3163     FALSE 0.046 215.000 0.000 NA   NA
 3616409 3616410 Pmen_3163 Pmen_3164     FALSE 0.074 169.000 0.000 NA   NA
 3616416 3616417 Pmen_3170 Pmen_3171     FALSE 0.092 154.000 0.000 NA   NA
 3616417 3616418 Pmen_3171 Pmen_3172     FALSE 0.142 79.000 0.000 1.000   NA
 3616421 3616422 Pmen_3175 Pmen_3176     FALSE 0.130 69.000 0.000 NA   NA
 3616423 3616424 Pmen_3177 Pmen_3178     FALSE 0.072 172.000 0.000 NA   NA
 3616424 3616425 Pmen_3178 Pmen_3179     FALSE 0.254 43.000 0.000 NA   NA
 3616425 3616426 Pmen_3179 Pmen_3180     FALSE 0.074 169.000 0.000 NA   NA
 3616427 3616428 Pmen_3181 Pmen_3182     TRUE 0.598 16.000 0.000 NA   NA
 3616428 3616429 Pmen_3182 Pmen_3183     TRUE 0.973 17.000 0.200 1.000 Y NA
 3616430 3616431 Pmen_3184 Pmen_3185     FALSE 0.382 106.000 0.100 1.000   NA
 3616432 3616433 Pmen_3186 Pmen_R0062     FALSE 0.107 135.000 0.000 NA   NA
 3616433 3616434 Pmen_R0062 Pmen_3187     FALSE 0.168 56.000 0.000 NA   NA
 3616436 3616437 Pmen_3189 Pmen_3190     FALSE 0.128 84.000 0.000 1.000 N NA
 3616440 3616441 Pmen_3193 Pmen_3194     FALSE 0.194 55.000 0.000 1.000   NA
 3616442 3616443 Pmen_3195 Pmen_3196     TRUE 0.990 -9.000 0.533 1.000 N NA
 3616444 3616445 Pmen_3197 Pmen_3198     TRUE 0.999 -3.000 0.690 0.002 Y NA
 3616445 3616446 Pmen_3198 Pmen_3199     TRUE 0.999 -6.000 0.696 0.094 Y NA
 3616446 3616447 Pmen_3199 Pmen_3200     TRUE 0.993 -3.000 0.222 1.000 Y NA
 3616448 3616449 Pmen_3201 Pmen_3202     FALSE 0.018 367.000 0.000 1.000 N NA
 3616449 3616450 Pmen_3202 Pmen_3203     FALSE 0.075 168.000 0.000 NA   NA
 3616450 3616451 Pmen_3203 Pmen_3204     FALSE 0.023 297.000 0.000 NA   NA
 3616451 3616452 Pmen_3204 Pmen_3205     FALSE 0.012 629.000 0.000 1.000 N NA
 3616452 3616453 Pmen_3205 Pmen_3206     FALSE 0.113 134.000 0.000 1.000 N NA
 3616453 3616454 Pmen_3206 Pmen_3207     FALSE 0.024 296.000 0.000 NA   NA
 3616454 3616455 Pmen_3207 Pmen_3208     TRUE 0.919 -3.000 0.029 NA   NA
 3616462 3616463 Pmen_3215 Pmen_3216     FALSE 0.024 322.000 0.000 1.000   NA
 3616463 3616464 Pmen_3216 Pmen_3217   ligD TRUE 0.963 16.000 0.371 1.000   NA
 3616468 3616469 Pmen_3221 Pmen_3222     FALSE 0.087 157.000 0.000 NA   NA
 3616470 3616471 Pmen_3223 Pmen_3224     TRUE 0.537 197.000 0.439 1.000 N NA
 3616471 3616472 Pmen_3224 Pmen_3225     FALSE 0.267 137.000 0.049 1.000 N NA
 3616472 3616473 Pmen_3225 Pmen_3226     TRUE 0.997 -3.000 0.286 0.064 Y NA
 3616473 3616474 Pmen_3226 Pmen_3227     FALSE 0.254 44.000 0.000 1.000 N NA
 3616474 3616475 Pmen_3227 Pmen_3228     FALSE 0.111 138.000 0.000 1.000 N NA
 3616475 3616476 Pmen_3228 Pmen_3229     FALSE 0.131 185.000 0.029 NA   NA
 3616478 3616479 Pmen_3231 Pmen_3232     FALSE 0.266 132.000 0.000 0.094   NA
 3616481 3616482 Pmen_3234 Pmen_3235     FALSE 0.051 193.000 0.000 NA N NA
 3616482 3616483 Pmen_3235 Pmen_3236   mdoG TRUE 0.988 -7.000 0.469 NA N NA
 3616483 3616484 Pmen_3236 Pmen_3237 mdoG   FALSE 0.033 260.000 0.000 1.000 N NA
 3616485 3616486 Pmen_3238 Pmen_3239     TRUE 0.618 148.000 0.000 0.040 Y NA
 3616490 3616491 Pmen_3243 Pmen_3244     FALSE 0.025 287.000 0.000 NA   NA
 3616492 3616493 Pmen_3245 Pmen_3246     TRUE 0.954 70.000 0.556 0.059 Y NA
 3616493 3616494 Pmen_3246 Pmen_3247     TRUE 0.998 -7.000 0.458 0.001 Y NA
 3616494 3616495 Pmen_3247 Pmen_3248     FALSE 0.318 101.000 0.065 1.000 N NA
 3616496 3616497 Pmen_3249 Pmen_3250     FALSE 0.087 157.000 0.000 NA   NA
 3616497 3616498 Pmen_3250 Pmen_3251     FALSE 0.124 81.000 0.000 NA   NA
 3616498 3616499 Pmen_3251 Pmen_3252     TRUE 0.958 4.000 0.143 NA   NA
 3616499 3616500 Pmen_3252 Pmen_3253     FALSE 0.147 62.000 0.000 NA   NA
 3616500 3616501 Pmen_3253 Pmen_3254     FALSE 0.191 51.000 0.000 NA   NA
 3616501 3616502 Pmen_3254 Pmen_3255     TRUE 0.993 12.000 0.444 1.000 Y NA
 3616503 3616504 Pmen_3256 Pmen_3257     FALSE 0.153 60.000 0.000 NA   NA
 3616504 3616505 Pmen_3257 Pmen_3258     FALSE 0.128 73.000 0.000 NA   NA
 3616506 3616507 Pmen_3259 Pmen_3260     FALSE 0.240 69.000 0.019 1.000   NA
 3616507 3616508 Pmen_3260 Pmen_3261     FALSE 0.286 73.000 0.038 1.000 N NA
 3616509 3616510 Pmen_3262 Pmen_3263     TRUE 0.771 92.000 0.500 1.000 N NA
 3616510 3616511 Pmen_3263 Pmen_3264     TRUE 0.978 -7.000 0.286 1.000 N NA
 3616514 3616515 Pmen_3267 Pmen_3268     FALSE 0.024 291.000 0.000 NA   NA
 3616516 3616517 Pmen_3269 Pmen_3270     TRUE 0.783 6.000 0.000 NA   NA
 3616517 3616518 Pmen_3270 Pmen_3271     TRUE 0.991 -3.000 0.437 1.000   NA
 3616520 3616521 Pmen_3273 Pmen_3274     TRUE 0.504 94.000 0.188 1.000   NA
 3616521 3616522 Pmen_3274 Pmen_3275     FALSE 0.174 110.000 0.010 NA   NA
 3616522 3616523 Pmen_3275 Pmen_3276     FALSE 0.126 78.000 0.000 NA   NA
 3616523 3616524 Pmen_3276 Pmen_3277     TRUE 0.697 127.000 0.021 0.059 Y NA
 3616524 3616525 Pmen_3277 Pmen_3278     FALSE 0.114 114.000 0.000 NA   NA
 3616525 3616526 Pmen_3278 Pmen_3279     FALSE 0.113 122.000 0.000 NA   NA
 3616526 3616527 Pmen_3279 Pmen_3280     TRUE 0.753 -21.000 0.000 NA   NA
 3616527 3616528 Pmen_3280 Pmen_3281     TRUE 0.965 -3.000 0.125 1.000   NA
 3616528 3616529 Pmen_3281 Pmen_3282     FALSE 0.090 155.000 0.000 NA   NA
 3616529 3616530 Pmen_3282 Pmen_3283     TRUE 0.826 2.000 0.000 NA   NA
 3616531 3616532 Pmen_3284 Pmen_3285     TRUE 0.615 66.000 0.250 NA   NA
 3616534 3616535 Pmen_3287 Pmen_3288     FALSE 0.183 316.000 0.120 0.051   NA
 3616535 3616536 Pmen_3288 Pmen_3289     TRUE 0.495 23.000 0.000 1.000 N NA
 3616536 3616537 Pmen_3289 Pmen_3290   folX TRUE 0.976 0.000 0.000 1.000 Y NA
 3616537 3616538 Pmen_3290 Pmen_3291 folX   FALSE 0.327 76.000 0.061 NA   NA
 3616538 3616539 Pmen_3291 Pmen_3292     TRUE 0.957 -3.000 0.097 NA   NA
 3616539 3616540 Pmen_3292 Pmen_3293     FALSE 0.080 163.000 0.000 NA   NA
 3616541 3616542 Pmen_3294 Pmen_3295     TRUE 0.982 0.000 0.254 NA   NA
 3616543 3616544 Pmen_3296 Pmen_3297     TRUE 0.991 11.000 0.713 NA   NA
 3616544 3616545 Pmen_3297 Pmen_3298     TRUE 0.994 3.000 0.620 NA   NA
 3616545 3616546 Pmen_3298 Pmen_3299     FALSE 0.014 429.000 0.000 NA   NA
 3616546 3616547 Pmen_3299 Pmen_3300     TRUE 0.926 56.000 0.450 NA Y NA
 3616547 3616548 Pmen_3300 Pmen_3301     TRUE 0.872 79.000 0.350 NA Y NA
 3616548 3616549 Pmen_3301 Pmen_3302     TRUE 0.973 60.000 0.947 NA Y NA
 3616549 3616550 Pmen_3302 Pmen_3303     TRUE 0.999 0.000 0.905 NA Y NA
 3616550 3616551 Pmen_3303 Pmen_3304     TRUE 0.453 78.000 0.133 1.000   NA
 3616553 3616554 Pmen_3306 Pmen_3307     FALSE 0.035 244.000 0.000 NA   NA
 3616557 3616558 Pmen_3310 Pmen_3311     TRUE 0.913 17.000 0.200 NA   NA
 3616558 3616559 Pmen_3311 Pmen_3312   purU FALSE 0.235 46.000 0.000 1.000 N NA
 3616562 3616563 Pmen_3315 Pmen_3316     FALSE 0.119 88.000 0.000 NA   NA
 3616563 3616564 Pmen_3316 Pmen_3317     TRUE 0.995 -3.000 0.708 NA   NA
 3616564 3616565 Pmen_3317 Pmen_3318     TRUE 0.945 -13.000 0.129 NA   NA
 3616565 3616566 Pmen_3318 Pmen_3319     TRUE 0.997 -3.000 0.955 NA   NA
 3616566 3616567 Pmen_3319 Pmen_3320     TRUE 0.994 -3.000 0.583 NA   NA
 3616567 3616568 Pmen_3320 Pmen_3321     TRUE 0.972 -3.000 0.182 NA   NA
 3616568 3616569 Pmen_3321 Pmen_3322     FALSE 0.049 208.000 0.000 NA   NA
 3616569 3616570 Pmen_3322 Pmen_3323     FALSE 0.070 213.000 0.004 1.000 N NA
 3616571 3616572 Pmen_3324 Pmen_3325     TRUE 0.995 2.000 0.722 NA   NA
 3616574 3616575 Pmen_3327 Pmen_3328     TRUE 0.966 3.000 0.167 1.000 N NA
 3616579 3616580 Pmen_3332 Pmen_3333     TRUE 0.473 54.000 0.087 NA   NA
 3616580 3616581 Pmen_3333 Pmen_3334     FALSE 0.017 366.000 0.000 NA   NA
 3616581 3616582 Pmen_3334 Pmen_3335     FALSE 0.181 232.000 0.132 NA   NA
 3616583 3616584 Pmen_3336 Pmen_3337     TRUE 0.942 5.000 0.091 NA   NA
 3616584 3616585 Pmen_3337 Pmen_3338     TRUE 0.990 12.000 0.726 NA   NA
 3616586 3616587 Pmen_3339 Pmen_3340     FALSE 0.257 125.000 0.039 1.000 N NA
 3616587 3616588 Pmen_3340 Pmen_3341     FALSE 0.101 146.000 0.000 NA   NA
 3616589 3616590 Pmen_3342 Pmen_3343     TRUE 0.982 -3.000 0.025 1.000 Y NA
 3616591 3616592 Pmen_3344 Pmen_3345     FALSE 0.125 162.000 0.004 1.000   NA
 3616592 3616593 Pmen_3345 Pmen_3346     FALSE 0.239 57.000 0.004 1.000   NA
 3616594 3616595 Pmen_3347 Pmen_3348   glpD FALSE 0.056 197.000 0.000 1.000 N NA
 3616595 3616596 Pmen_3348 Pmen_3349 glpD   FALSE 0.030 270.000 0.000 1.000 N NA
 3616597 3616598 Pmen_3350 Pmen_3351     TRUE 0.989 7.000 0.354 0.093 N NA
 3616600 3616601 Pmen_3353 Pmen_3354     FALSE 0.070 233.000 0.017 NA   NA
 3616601 3616602 Pmen_3354 Pmen_3355     TRUE 0.837 13.000 0.037 NA   NA
 3616602 3616603 Pmen_3355 Pmen_3356     TRUE 0.440 55.000 0.074 NA   NA
 3616603 3616604 Pmen_3356 Pmen_3357     FALSE 0.168 114.000 0.008 NA   NA
 3616604 3616605 Pmen_3357 Pmen_3358     FALSE 0.170 116.000 0.002 1.000   NA
 3616605 3616606 Pmen_3358 Pmen_3359   adk FALSE 0.075 180.000 0.000 1.000   NA
 3616606 3616607 Pmen_3359 Pmen_3360 adk   FALSE 0.046 222.000 0.000 1.000 N NA
 3616608 3616609 Pmen_3361 Pmen_3362     FALSE 0.013 433.000 0.000 NA   NA
 3616609 3616610 Pmen_3362 Pmen_3363     TRUE 0.801 47.000 0.333 NA   NA
 3616611 3616612 Pmen_3364 Pmen_3365     TRUE 0.971 -3.000 0.174 NA   NA
 3616612 3616613 Pmen_3365 Pmen_3366     TRUE 0.859 -10.000 0.015 NA   NA
 3616613 3616614 Pmen_3366 Pmen_3367     FALSE 0.202 81.000 0.015 NA   NA
 3616614 3616615 Pmen_3367 Pmen_3368     TRUE 0.937 9.000 0.104 NA   NA
 3616615 3616616 Pmen_3368 Pmen_3369     TRUE 0.804 44.000 0.304 NA   NA
 3616616 3616617 Pmen_3369 Pmen_3370   lysS FALSE 0.130 170.000 0.012 1.000   NA
 3616617 3616618 Pmen_3370 Pmen_3371 lysS   TRUE 0.852 72.000 0.162 0.034 Y NA
 3616618 3616619 Pmen_3371 Pmen_3372     FALSE 0.119 138.000 0.000 1.000   NA
 3616619 3616620 Pmen_3372 Pmen_3373     FALSE 0.141 80.000 0.000 1.000   NA
 3616622 3616623 Pmen_3375 Pmen_3376     FALSE 0.077 166.000 0.000 NA   NA
 3616623 3616624 Pmen_3376 Pmen_3377     FALSE 0.285 48.000 0.004 1.000 N NA
 3616625 3616626 Pmen_3378 Pmen_3379     TRUE 0.997 -3.000 0.909 1.000   NA
 3616626 3616627 Pmen_3379 Pmen_3380     TRUE 0.999 -3.000 0.909 NA Y NA
 3616627 3616628 Pmen_3380 Pmen_3381     FALSE 0.215 132.000 0.032 NA N NA
 3616629 3616630 Pmen_3382 Pmen_3383     FALSE 0.150 61.000 0.000 NA   NA
 3616630 3616631 Pmen_3383 Pmen_3384     TRUE 0.838 0.000 0.000 NA   NA
 3616631 3616632 Pmen_3384 Pmen_3385     TRUE 0.669 14.000 0.000 1.000   NA
 3616632 3616633 Pmen_3385 Pmen_3386     TRUE 0.928 -3.000 0.031 1.000   NA
 3616633 3616634 Pmen_3386 Pmen_3387     TRUE 0.756 177.000 0.711 NA   NA
 3616634 3616635 Pmen_3387 Pmen_3388     TRUE 0.831 92.000 0.644 NA   NA
 3616635 3616636 Pmen_3388 Pmen_3389     TRUE 0.454 61.000 0.107 NA   NA
 3616636 3616637 Pmen_3389 Pmen_3390     TRUE 0.992 14.000 0.911 NA   NA
 3616638 3616639 Pmen_3391 Pmen_3392     TRUE 0.826 2.000 0.000 NA   NA
 3616640 3616641 Pmen_3393 Pmen_3394     TRUE 0.788 58.000 0.125 1.000 Y NA
 3616641 3616642 Pmen_3394 Pmen_3395     FALSE 0.077 249.000 0.029 1.000 N NA
 3616642 3616643 Pmen_3395 Pmen_3396   xerD FALSE 0.232 92.000 0.026 1.000 N NA
 3616645 3616646 Pmen_3398 Pmen_3399 rplS trmD TRUE 0.969 43.000 0.567 1.000 Y NA
 3616646 3616647 Pmen_3399 Pmen_3400 trmD rimM TRUE 0.998 6.000 0.672 1.000 Y NA
 3616647 3616648 Pmen_3400 Pmen_3401 rimM rpsP TRUE 0.996 10.000 0.342 0.009 Y NA
 3616648 3616649 Pmen_3401 Pmen_3402 rpsP   TRUE 0.654 143.000 0.361 1.000 N NA
 3616650 3616651 Pmen_3403 Pmen_3404     TRUE 0.976 11.000 0.349 NA   NA
 3616652 3616653 Pmen_3405 Pmen_3406   purT TRUE 0.927 -3.000 0.033 1.000 N NA
 3616653 3616654 Pmen_3406 Pmen_3407 purT   TRUE 0.854 22.000 0.154 NA   NA
 3616654 3616655 Pmen_3407 Pmen_3408     TRUE 0.927 -7.000 0.062 NA   NA
 3616655 3616656 Pmen_3408 Pmen_3409     TRUE 0.903 12.000 0.078 1.000   NA
 3616657 3616658 Pmen_3410 Pmen_3411     TRUE 0.773 22.000 0.065 NA   NA
 3616659 3616660 Pmen_3412 Pmen_3413     FALSE 0.089 156.000 0.000 NA   NA
 3616660 3616661 Pmen_3413 Pmen_3414     FALSE 0.016 387.000 0.000 NA   NA
 3616663 3616664 Pmen_3416 Pmen_3417     TRUE 0.621 21.000 0.008 NA   NA
 3616664 3616665 Pmen_3417 Pmen_3418     FALSE 0.391 54.000 0.045 1.000 N NA
 3616666 3616667 Pmen_3419 Pmen_3420     TRUE 0.817 3.000 0.000 NA   NA
 3616669 3616670 Pmen_3422 Pmen_3423     TRUE 0.753 -22.000 0.000 NA   NA
 3616670 3616671 Pmen_3423 Pmen_3424     FALSE 0.029 269.000 0.000 NA   NA
 3616671 3616672 Pmen_3424 Pmen_3425     TRUE 0.989 -3.000 0.394 NA   NA
 3616672 3616673 Pmen_3425 Pmen_3426     TRUE 0.987 -25.000 0.515 NA   NA
 3616673 3616674 Pmen_3426 Pmen_3427     FALSE 0.015 389.000 0.000 NA   NA
 3616674 3616675 Pmen_3427 Pmen_3428     FALSE 0.179 54.000 0.000 NA   NA
 3616675 3616676 Pmen_3428 Pmen_3429     FALSE 0.090 155.000 0.000 NA   NA
 3616677 3616678 Pmen_3430 Pmen_3431     FALSE 0.073 171.000 0.000 NA   NA
 3616679 3616680 Pmen_3432 Pmen_3433     FALSE 0.010 991.000 0.000 NA   NA
 3616680 3616681 Pmen_3433 Pmen_3434     TRUE 0.852 -3.000 0.000 1.000   NA
 3616681 3616682 Pmen_3434 Pmen_3435     FALSE 0.163 57.000 0.000 NA   NA
 3616684 3616685 Pmen_3437 Pmen_3438     TRUE 0.955 29.000 0.582 NA   NA
 3616685 3616686 Pmen_3438 Pmen_3439     TRUE 0.971 -3.000 0.164 1.000   NA
 3616686 3616687 Pmen_3439 Pmen_3440     TRUE 0.957 13.000 0.143 0.050   NA
 3616687 3616688 Pmen_3440 Pmen_3441     FALSE 0.047 228.000 0.000 1.000   NA
 3616688 3616689 Pmen_3441 Pmen_3442     TRUE 0.859 19.000 0.105 1.000   NA
 3616689 3616690 Pmen_3442 Pmen_3443     TRUE 0.741 33.000 0.105 1.000   NA
 3616690 3616691 Pmen_3443 Pmen_3444     TRUE 0.912 5.000 0.039 1.000 N NA
 3616693 3616694 Pmen_3446 Pmen_3447     FALSE 0.018 368.000 0.000 1.000 N NA
 3616694 3616695 Pmen_3447 Pmen_3448     TRUE 0.997 -3.000 0.304 0.053 Y NA
 3616695 3616696 Pmen_3448 Pmen_3449     TRUE 0.999 4.000 0.852 0.053 Y NA
 3616696 3616697 Pmen_3449 Pmen_3450     TRUE 0.997 18.000 0.815 0.053 Y NA
 3616697 3616698 Pmen_3450 Pmen_3451     FALSE 0.028 291.000 0.000 1.000   NA
 3616700 3616701 Pmen_3453 Pmen_3454     TRUE 0.993 -3.000 0.565 NA   NA
 3616701 3616702 Pmen_3454 Pmen_3455     TRUE 0.975 17.000 0.543 NA   NA
 3616702 3616703 Pmen_3455 Pmen_3456     TRUE 0.759 28.000 0.100 NA   NA
 3616703 3616704 Pmen_3456 Pmen_3457     TRUE 0.719 34.000 0.100 1.000 N NA
 3616704 3616705 Pmen_3457 Pmen_3458     TRUE 0.842 -3.000 0.000 1.000 N NA
 3616705 3616706 Pmen_3458 Pmen_3459     TRUE 0.842 -3.000 0.000 1.000 N NA
 3616706 3616707 Pmen_3459 Pmen_3460     TRUE 0.540 111.000 0.224 1.000 N NA
 3616707 3616708 Pmen_3460 Pmen_3461     FALSE 0.031 276.000 0.000 1.000   NA
 3616708 3616709 Pmen_3461 Pmen_3462     FALSE 0.097 249.000 0.000 0.092   NA
 3616709 3616710 Pmen_3462 Pmen_3463     FALSE 0.168 56.000 0.000 NA   NA
 3616711 3616712 Pmen_3464 Pmen_3465     FALSE 0.153 63.000 0.000 1.000 N NA
 3616712 3616713 Pmen_3465 Pmen_3466     TRUE 0.960 118.000 0.901 1.000 Y NA
 3616713 3616714 Pmen_3466 Pmen_3467     TRUE 0.997 12.000 0.786 1.000 Y NA
 3616714 3616715 Pmen_3467 Pmen_3468     TRUE 0.885 40.000 0.132 1.000 Y NA
 3616716 3616717 Pmen_3469 Pmen_3470     FALSE 0.024 316.000 0.000 1.000   NA
 3616717 3616718 Pmen_3470 Pmen_3471     TRUE 0.842 -3.000 0.000 1.000 N NA
 3616718 3616719 Pmen_3471 Pmen_3472     TRUE 0.976 -18.000 0.308 1.000 N NA
 3616719 3616720 Pmen_3472 Pmen_3473     TRUE 0.998 12.000 0.750 0.002 Y NA
 3616720 3616721 Pmen_3473 Pmen_3474     TRUE 0.998 -3.000 0.875 0.002   NA
 3616721 3616722 Pmen_3474 Pmen_3475     TRUE 0.953 4.000 0.000 0.002   NA
 3616722 3616723 Pmen_3475 Pmen_3476     FALSE 0.080 175.000 0.000 1.000   NA
 3616725 3616726 Pmen_3478 Pmen_3479     FALSE 0.019 325.000 0.000 NA N NA
 3616726 3616727 Pmen_3479 Pmen_3480     TRUE 0.834 -3.000 0.000 NA   NA
 3616727 3616728 Pmen_3480 Pmen_3481     FALSE 0.013 443.000 0.000 NA   NA
 3616729 3616730 Pmen_3482 Pmen_3483     TRUE 0.994 5.000 0.706 NA   NA
 3616730 3616731 Pmen_3483 Pmen_3484     FALSE 0.431 61.000 0.091 NA   NA
 3616731 3616732 Pmen_3484 Pmen_3485   guaA FALSE 0.033 302.000 0.002 1.000 N NA
 3616732 3616733 Pmen_3485 Pmen_3486 guaA   TRUE 0.496 209.000 0.190 0.000   NA
 3616733 3616734 Pmen_3486 Pmen_3487     FALSE 0.072 211.000 0.008 NA   NA
 3616734 3616735 Pmen_3487 Pmen_3488     FALSE 0.365 57.000 0.048 NA   NA
 3616736 3616737 Pmen_3489 Pmen_3490   xseA TRUE 0.799 -7.000 0.000 1.000 N NA
 3616737 3616738 Pmen_3490 Pmen_3491 xseA   TRUE 0.896 7.000 0.032 1.000 N NA
 3616738 3616739 Pmen_3491 Pmen_3492     FALSE 0.027 285.000 0.000 1.000 N NA
 3616740 3616741 Pmen_3493 Pmen_3494     TRUE 0.692 12.000 0.000 NA   NA
 3616741 3616742 Pmen_3494 Pmen_3495     TRUE 0.733 33.000 0.099 1.000   NA
 3616742 3616743 Pmen_3495 Pmen_3496   engA FALSE 0.163 139.000 0.006 1.000   NA
 3616743 3616744 Pmen_3496 Pmen_3497 engA   TRUE 0.520 99.000 0.203 1.000   NA
 3616744 3616745 Pmen_3497 Pmen_3498     TRUE 0.989 5.000 0.492 1.000   NA
 3616745 3616746 Pmen_3498 Pmen_3499   hisS TRUE 0.865 33.000 0.259 1.000   NA
 3616746 3616747 Pmen_3499 Pmen_3500 hisS ispG TRUE 0.876 24.000 0.207 1.000 N NA
 3616747 3616748 Pmen_3500 Pmen_3501 ispG   TRUE 0.975 4.000 0.233 1.000   NA
 3616748 3616749 Pmen_3501 Pmen_3502     TRUE 0.976 -3.000 0.204 1.000   NA
 3616749 3616750 Pmen_3502 Pmen_3503     TRUE 0.884 14.000 0.086 1.000   NA
 3616750 3616751 Pmen_3503 Pmen_3504     TRUE 0.822 27.000 0.156 1.000   NA
 3616751 3616752 Pmen_3504 Pmen_3505     FALSE 0.160 158.000 0.017 1.000   NA
 3616752 3616753 Pmen_3505 Pmen_3506     TRUE 0.981 17.000 0.625 1.000   NA
 3616753 3616754 Pmen_3506 Pmen_3507   hscA TRUE 0.995 4.000 0.794 1.000 N NA
 3616754 3616755 Pmen_3507 Pmen_3508 hscA hscB TRUE 0.969 46.000 0.634 1.000 Y NA
 3616755 3616756 Pmen_3508 Pmen_3509 hscB   TRUE 0.987 10.000 0.500 1.000   NA
 3616756 3616757 Pmen_3509 Pmen_3510     TRUE 0.985 14.000 0.359 0.001   NA
 3616757 3616758 Pmen_3510 Pmen_3511     TRUE 0.873 44.000 0.448 1.000 N NA
 3616758 3616759 Pmen_3511 Pmen_3512     TRUE 0.926 31.000 0.424 1.000 N NA
 3616759 3616760 Pmen_3512 Pmen_3513     TRUE 0.571 137.000 0.271 1.000 N NA
 3616760 3616761 Pmen_3513 Pmen_3514     TRUE 0.968 -7.000 0.208 1.000 N NA
 3616763 3616764 Pmen_3516 Pmen_3517   secF FALSE 0.296 119.000 0.050 1.000   NA
 3616764 3616765 Pmen_3517 Pmen_3518 secF secD TRUE 0.993 10.000 0.171 0.001 Y NA
 3616765 3616766 Pmen_3518 Pmen_3519 secD yajC TRUE 0.622 72.000 0.031 NA Y NA
 3616766 3616767 Pmen_3519 Pmen_3520 yajC tgt TRUE 0.832 41.000 0.325 NA N NA
 3616767 3616768 Pmen_3520 Pmen_3521 tgt queA TRUE 0.998 3.000 0.360 0.000 Y NA
 3616768 3616769 Pmen_3521 Pmen_3522 queA   FALSE 0.125 92.000 0.000 1.000 N NA
 3616770 3616771 Pmen_R0063 Pmen_3523     FALSE 0.019 340.000 0.000 NA   NA
 3616771 3616772 Pmen_3523 Pmen_3524     FALSE 0.301 105.000 0.061 NA   NA
 3616773 3616774 Pmen_3525 Pmen_3526     TRUE 0.996 -7.000 0.631 0.058   NA
 3616775 3616776 Pmen_3527 Pmen_3528     TRUE 0.843 112.000 0.494 0.024 N NA
 3616776 3616777 Pmen_3528 Pmen_3529     FALSE 0.307 61.000 0.034 NA   NA
 3616777 3616778 Pmen_3529 Pmen_3530   valS FALSE 0.122 163.000 0.009 NA   NA
 3616778 3616779 Pmen_3530 Pmen_3531 valS   FALSE 0.121 104.000 0.000 1.000 N NA
 3616779 3616780 Pmen_3531 Pmen_3532     FALSE 0.098 256.000 0.000 0.058 N NA
 3616780 3616781 Pmen_3532 Pmen_3533     TRUE 0.655 38.000 0.100 NA   NA
 3616781 3616782 Pmen_3533 Pmen_3534     FALSE 0.165 193.000 0.061 NA   NA
 3616782 3616783 Pmen_3534 Pmen_3535     FALSE 0.187 115.000 0.010 1.000   NA
 3616784 3616785 Pmen_3536 Pmen_3537     FALSE 0.043 230.000 0.000 1.000 N NA
 3616785 3616786 Pmen_3537 Pmen_3538     TRUE 0.825 3.000 0.000 1.000 N NA
 3616786 3616787 Pmen_3538 Pmen_3539     FALSE 0.175 59.000 0.000 1.000   NA
 3616787 3616788 Pmen_3539 Pmen_3540     FALSE 0.134 91.000 0.000 1.000   NA
 3616788 3616789 Pmen_3540 Pmen_3541     FALSE 0.023 310.000 0.000 1.000 N NA
 3616789 3616790 Pmen_3541 Pmen_3542     FALSE 0.015 414.000 0.000 1.000 N NA
 3616791 3616792 Pmen_3543 Pmen_3544     TRUE 0.962 4.000 0.158 1.000 N NA
 3616794 3616795 Pmen_3546 Pmen_3547     FALSE 0.039 235.000 0.000 NA   NA
 3616797 3616798 Pmen_3549 Pmen_3550     TRUE 0.897 2.000 0.017 NA   NA
 3616798 3616799 Pmen_3550 Pmen_3551     TRUE 0.834 -3.000 0.000 NA   NA
 3616800 3616801 Pmen_3552 Pmen_3553     FALSE 0.299 65.000 0.041 NA N NA
 3616801 3616802 Pmen_3553 Pmen_3554     TRUE 0.895 -3.000 0.010 1.000 N NA
 3616802 3616803 Pmen_3554 Pmen_3555     FALSE 0.300 54.000 0.020 NA   NA
 3616805 3616806 Pmen_3557 Pmen_3558     TRUE 0.997 10.000 0.734 1.000 Y NA
 3616806 3616807 Pmen_3558 Pmen_3559     TRUE 0.999 10.000 0.815 0.011 Y NA
 3616807 3616808 Pmen_3559 Pmen_3560     TRUE 0.948 99.000 0.548 0.053 Y NA
 3616809 3616810 Pmen_3561 Pmen_3562     FALSE 0.211 115.000 0.019 1.000   NA
 3616810 3616811 Pmen_3562 Pmen_3563     FALSE 0.060 192.000 0.000 1.000 N NA
 3616811 3616812 Pmen_3563 Pmen_3564     FALSE 0.367 99.000 0.091 1.000 N NA
 3616812 3616813 Pmen_3564 Pmen_3565     FALSE 0.190 100.000 0.013 1.000 N NA
 3616813 3616814 Pmen_3565 Pmen_3566     FALSE 0.038 336.000 0.019 1.000 N NA
 3616814 3616815 Pmen_3566 Pmen_3567     TRUE 0.994 3.000 0.286 1.000 Y NA
 3616815 3616816 Pmen_3567 Pmen_3568     TRUE 0.663 113.000 0.333 1.000   NA
 3616816 3616817 Pmen_3568 Pmen_3569     TRUE 0.791 5.000 0.000 NA   NA
 3616821 3616822 Pmen_3573 Pmen_3574     TRUE 0.997 -7.000 0.293 0.004 Y NA
 3616822 3616823 Pmen_3574 Pmen_3575     FALSE 0.409 32.000 0.000 1.000   NA
 3616823 3616824 Pmen_3575 Pmen_3576     TRUE 0.852 -3.000 0.000 1.000   NA
 3616824 3616825 Pmen_3576 Pmen_3577     TRUE 0.790 -7.000 0.000 NA   NA
 3616826 3616827 Pmen_3578 Pmen_3579     FALSE 0.154 305.000 0.000 1.000 Y NA
 3616828 3616829 Pmen_3580 Pmen_3581     TRUE 0.566 20.000 0.000 1.000   NA
 3616829 3616830 Pmen_3581 Pmen_3582     TRUE 0.979 -13.000 0.333 NA   NA
 3616831 3616832 Pmen_3583 Pmen_3584     TRUE 0.900 -10.000 0.038 NA   NA
 3616833 3616834 Pmen_3585 Pmen_3586     TRUE 0.690 51.000 0.231 1.000 N NA
 3616834 3616835 Pmen_3586 Pmen_3587     FALSE 0.259 140.000 0.042 1.000   NA
 3616835 3616836 Pmen_3587 Pmen_3588     TRUE 0.978 -16.000 0.312 1.000   NA
 3616836 3616837 Pmen_3588 Pmen_3589     TRUE 0.880 54.000 0.453 0.083 N NA
 3616837 3616838 Pmen_3589 Pmen_3590     FALSE 0.011 827.000 0.000 1.000 N NA
 3616838 3616839 Pmen_3590 Pmen_3591     TRUE 0.890 -3.000 0.008 1.000 N NA
 3616839 3616840 Pmen_3591 Pmen_3592   panB FALSE 0.183 274.000 0.000 1.000 Y NA
 3616840 3616841 Pmen_3592 Pmen_3593 panB panC TRUE 0.998 -3.000 0.395 0.000 Y NA
 3616841 3616842 Pmen_3593 Pmen_3594 panC pgi FALSE 0.196 79.000 0.010 1.000 N NA
 3616842 3616843 Pmen_3594 Pmen_3595 pgi   FALSE 0.117 305.000 0.146 1.000 N NA
 3616843 3616844 Pmen_3595 Pmen_3596     FALSE 0.348 121.000 0.088 NA   NA
 3616844 3616845 Pmen_3596 Pmen_3597     FALSE 0.236 91.000 0.029 NA   NA
 3616845 3616846 Pmen_3597 Pmen_3598     FALSE 0.102 143.000 0.000 NA   NA
 3616846 3616847 Pmen_3598 Pmen_3599     FALSE 0.245 105.000 0.034 NA   NA
 3616847 3616848 Pmen_3599 Pmen_3600     TRUE 0.936 -3.000 0.046 NA   NA
 3616848 3616849 Pmen_3600 Pmen_3601     TRUE 0.987 14.000 0.714 NA   NA
 3616850 3616851 Pmen_3602 Pmen_3603     TRUE 0.554 55.000 0.156 NA   NA
 3616851 3616852 Pmen_3603 Pmen_3604     FALSE 0.016 387.000 0.000 NA   NA
 3616852 3616853 Pmen_3604 Pmen_3605   rpsO TRUE 0.860 103.000 0.335 1.000 Y NA
 3616853 3616854 Pmen_3605 Pmen_3606 rpsO   TRUE 0.697 168.000 0.211 1.000 Y NA
 3616854 3616855 Pmen_3606 Pmen_3607   rbfA TRUE 0.995 3.000 0.318 1.000 Y NA
 3616855 3616856 Pmen_3607 Pmen_3608 rbfA infB TRUE 0.913 113.000 0.530 1.000 Y NA
 3616856 3616857 Pmen_3608 Pmen_3609 infB nusA TRUE 0.916 28.000 0.342 1.000 N NA
 3616857 3616858 Pmen_3609 Pmen_3610 nusA   TRUE 0.813 161.000 0.759 NA   NA
 3616858 3616859 Pmen_3610 Pmen_R0064     FALSE 0.109 130.000 0.000 NA   NA
 3616859 3616860 Pmen_R0064 Pmen_R0065     FALSE 0.117 98.000 0.000 NA   NA
 3616860 3616861 Pmen_R0065 Pmen_3611   secG TRUE 0.770 8.000 0.000 NA   NA
 3616861 3616862 Pmen_3611 Pmen_3612 secG tpiA TRUE 0.967 4.000 0.184 1.000 N NA
 3616862 3616863 Pmen_3612 Pmen_3613 tpiA   TRUE 0.722 66.000 0.082 1.000 Y NA
 3616863 3616864 Pmen_3613 Pmen_3614     TRUE 0.950 14.000 0.260 1.000 N NA
 3616864 3616865 Pmen_3614 Pmen_3615     TRUE 0.979 9.000 0.325 1.000 N NA
 3616865 3616866 Pmen_3615 Pmen_3616     FALSE 0.223 164.000 0.066 NA N NA
 3616868 3616869 Pmen_3618 Pmen_3619   greA TRUE 0.838 -43.000 0.014 NA   NA
 3616869 3616870 Pmen_3619 Pmen_3620 greA carB TRUE 0.980 -3.000 0.241 1.000 N NA
 3616870 3616871 Pmen_3620 Pmen_3621 carB   TRUE 0.980 37.000 0.345 0.000 Y NA
 3616871 3616872 Pmen_3621 Pmen_3622     FALSE 0.427 190.000 0.034 1.000 Y NA
 3616872 3616873 Pmen_3622 Pmen_3623     FALSE 0.415 49.000 0.041 1.000 N NA
 3616873 3616874 Pmen_3623 Pmen_3624     TRUE 0.882 136.000 0.236 0.003 Y NA
 3616874 3616875 Pmen_3624 Pmen_3625     TRUE 0.782 100.000 0.049 0.006 Y NA
 3616879 3616880 Pmen_3629 Pmen_3630     TRUE 0.939 -7.000 0.086 NA   NA
 3616880 3616881 Pmen_3630 Pmen_3631     TRUE 0.915 0.000 0.024 NA   NA
 3616884 3616885 Pmen_3634 Pmen_3635   lldD TRUE 0.515 93.000 0.000 1.000 Y NA
 3616885 3616886 Pmen_3635 Pmen_3636 lldD   TRUE 0.981 5.000 0.053 1.000 Y NA
 3616886 3616887 Pmen_3636 Pmen_3637     TRUE 0.834 -3.000 0.000 NA   NA
 3616887 3616888 Pmen_3637 Pmen_3638     TRUE 0.531 20.000 0.000 NA   NA
 3616889 3616890 Pmen_3639 Pmen_3640     FALSE 0.119 120.000 0.000 1.000 N NA
 3616890 3616891 Pmen_3640 Pmen_3641     FALSE 0.115 130.000 0.000 1.000 N NA
 3616891 3616892 Pmen_3641 Pmen_3642     TRUE 0.480 176.000 0.036 1.000 Y NA
 3616893 3616894 Pmen_3643 Pmen_3644     TRUE 0.941 1.000 0.057 NA   NA
 3616894 3616895 Pmen_3644 Pmen_3645     TRUE 0.923 10.000 0.075 1.000   NA
 3616895 3616896 Pmen_3645 Pmen_3646     FALSE 0.222 231.000 0.170 1.000   NA
 3616897 3616898 Pmen_3647 Pmen_3648     TRUE 0.934 45.000 0.200 0.018 Y NA
 3616898 3616899 Pmen_3648 Pmen_3649     FALSE 0.037 245.000 0.000 1.000 N NA
 3616899 3616900 Pmen_3649 Pmen_3650     TRUE 0.660 141.000 0.000 0.006 Y NA
 3616900 3616901 Pmen_3650 Pmen_3651     FALSE 0.278 61.000 0.021 1.000   NA
 3616901 3616902 Pmen_3651 Pmen_3652     TRUE 0.894 0.000 0.004 1.000   NA
 3616903 3616904 Pmen_3653 Pmen_3654     FALSE 0.030 265.000 0.000 NA   NA
 3616905 3616906 Pmen_3655 Pmen_3656     FALSE 0.273 71.000 0.031 1.000   NA
 3616908 3616909 Pmen_3658 Pmen_3659     TRUE 0.661 143.000 0.375 NA   NA
 3616909 3616910 Pmen_3659 Pmen_3660     TRUE 0.979 27.000 0.889 NA   NA
 3616910 3616911 Pmen_3660 Pmen_3661     FALSE 0.046 215.000 0.000 NA   NA
 3616914 3616915 Pmen_3664 Pmen_3665     FALSE 0.268 121.000 0.042 1.000 N NA
 3616915 3616916 Pmen_3665 Pmen_3666     FALSE 0.040 245.000 0.000 1.000   NA
 3616916 3616917 Pmen_3666 Pmen_3667     FALSE 0.168 110.000 0.008 NA   NA
 3616920 3616921 Pmen_3670 Pmen_3671     TRUE 0.896 31.000 0.320 NA   NA
 3616926 3616927 Pmen_3676 Pmen_3677     FALSE 0.025 449.000 0.020 NA   NA
 3616928 3616929 Pmen_3678 Pmen_3679     TRUE 0.845 10.000 0.017 NA   NA
 3616929 3616930 Pmen_3679 Pmen_3680   obgE TRUE 0.540 82.000 0.206 1.000   NA
 3616930 3616931 Pmen_3680 Pmen_3681 obgE rpmA FALSE 0.368 243.000 0.335 1.000   NA
 3616931 3616932 Pmen_3681 Pmen_3682 rpmA   TRUE 0.989 38.000 0.667 0.009 Y NA
 3616935 3616936 Pmen_3685 Pmen_3686   fxsA FALSE 0.261 68.000 0.026 1.000   NA
 3616936 3616937 Pmen_3686 Pmen_3687 fxsA groES FALSE 0.049 321.000 0.028 1.000   NA
 3616937 3616938 Pmen_3687 Pmen_3688 groES groEL TRUE 0.919 50.000 0.177 0.006 Y NA
 3616938 3616939 Pmen_3688 Pmen_3689 groEL   FALSE 0.108 238.000 0.000 0.082   NA
 3616939 3616940 Pmen_3689 Pmen_3690     FALSE 0.280 360.000 0.455 NA   NA
 3616940 3616941 Pmen_3690 Pmen_3691     FALSE 0.107 134.000 0.000 NA   NA
 3616941 3616942 Pmen_3691 Pmen_3692     FALSE 0.134 67.000 0.000 NA   NA
 3616943 3616944 Pmen_3693 Pmen_3694     FALSE 0.118 124.000 0.000 1.000 N NA
 3616944 3616945 Pmen_3694 Pmen_3695     FALSE 0.125 89.000 0.000 1.000 N NA
 3616946 3616947 Pmen_3696 Pmen_3697     FALSE 0.018 338.000 0.000 NA N NA
 3616947 3616948 Pmen_3697 Pmen_3698     FALSE 0.117 74.000 0.000 NA N NA
 3616948 3616949 Pmen_3698 Pmen_3699     TRUE 0.470 159.000 0.240 1.000 N NA
 3616949 3616950 Pmen_3699 Pmen_3700     TRUE 0.917 0.000 0.019 1.000   NA
 3616950 3616951 Pmen_3700 Pmen_3701     TRUE 0.834 -3.000 0.000 NA   NA
 3616951 3616952 Pmen_3701 Pmen_3702     FALSE 0.209 46.000 0.000 NA N NA
 3616954 3616955 Pmen_3704 Pmen_3705     FALSE 0.116 127.000 0.000 1.000 N NA
 3616955 3616956 Pmen_3705 Pmen_3706     TRUE 0.562 105.000 0.013 1.000 Y NA
 3616957 3616958 Pmen_3707 Pmen_3708     FALSE 0.083 161.000 0.000 NA   NA
 3616958 3616959 Pmen_3708 Pmen_3709     TRUE 0.834 -3.000 0.000 NA   NA
 3616959 3616960 Pmen_3709 Pmen_3710     FALSE 0.111 125.000 0.000 NA   NA
 3616960 3616961 Pmen_3710 Pmen_3711     TRUE 0.532 105.000 0.222 NA   NA
 3616962 3616963 Pmen_3712 Pmen_3713     FALSE 0.372 217.000 0.300 NA   NA
 3616965 3616966 Pmen_3715 Pmen_3716     TRUE 0.741 158.000 0.565 1.000 N NA
 3616966 3616967 Pmen_3716 Pmen_3717     TRUE 0.996 -3.000 0.538 0.052 N NA
 3616968 3616969 Pmen_3718 Pmen_3719     TRUE 0.943 -3.000 0.052 1.000   NA
 3616969 3616970 Pmen_3719 Pmen_3720     TRUE 0.847 -19.000 0.010 1.000   NA
 3616970 3616971 Pmen_3720 Pmen_3721     TRUE 0.852 -3.000 0.000 1.000   NA
 3616974 3616975 Pmen_3724 Pmen_3725     FALSE 0.073 182.000 0.000 1.000   NA
 3616975 3616976 Pmen_3725 Pmen_3726     TRUE 0.997 5.000 0.902 0.087   NA
 3616976 3616977 Pmen_3726 Pmen_3727     FALSE 0.118 93.000 0.000 NA   NA
 3616978 3616979 Pmen_3728 Pmen_3729     TRUE 0.538 126.000 0.007 1.000 Y NA
 3616979 3616980 Pmen_3729 Pmen_3730     TRUE 0.844 8.000 0.010 NA   NA
 3616981 3616982 Pmen_3731 Pmen_3732     FALSE 0.147 62.000 0.000 NA   NA
 3616982 3616983 Pmen_3732 Pmen_3733     FALSE 0.341 35.000 0.000 NA   NA
 3616984 3616985 Pmen_3734 Pmen_3735     TRUE 0.857 0.000 0.000 1.000   NA
 3616986 3616987 Pmen_3736 Pmen_3737     FALSE 0.216 94.000 0.024 NA   NA
 3616988 3616989 Pmen_3738 Pmen_3739     TRUE 0.780 8.000 0.000 1.000 N NA
 3616990 3616991 Pmen_3740 Pmen_3741     TRUE 0.900 5.000 0.031 NA   NA
 3616991 3616992 Pmen_3741 Pmen_3742     FALSE 0.018 371.000 0.000 1.000 N NA
 3616992 3616993 Pmen_3742 Pmen_3743     FALSE 0.341 91.000 0.077 NA   NA
 3616993 3616994 Pmen_3743 Pmen_3744     FALSE 0.303 81.000 0.051 NA   NA
 3616996 3616997 Pmen_3746 Pmen_3747     FALSE 0.194 55.000 0.000 1.000   NA
 11442050 3616997   Pmen_3747     FALSE NA 6753.000 0.000 NA   NA
 11584413 3616997   Pmen_3747     FALSE NA 6753.000 0.000 NA   NA
 11726805 3616997   Pmen_3747     FALSE NA 6753.000 0.000 NA   NA
 11442051 3616997   Pmen_3747     FALSE NA 6782.000 0.000 NA   NA
 11584414 3616997   Pmen_3747     FALSE NA 6782.000 0.000 NA   NA
 11726806 3616997   Pmen_3747     FALSE NA 6782.000 0.000 NA   NA
 11442052 3616997   Pmen_3747     FALSE NA 6814.000 0.000 NA   NA
 11584415 3616997   Pmen_3747     FALSE NA 6814.000 0.000 NA   NA
 11726807 3616997   Pmen_3747     FALSE NA 6814.000 0.000 NA   NA
 11442053 3616997   Pmen_3747     FALSE NA 6843.000 0.000 NA   NA
 11584416 3616997   Pmen_3747     FALSE NA 6843.000 0.000 NA   NA
 11726808 3616997   Pmen_3747     FALSE NA 6843.000 0.000 NA   NA
 11442054 3616997   Pmen_3747     FALSE NA 6874.000 0.000 NA   NA
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 11726876 3616997   Pmen_3747     FALSE NA 8922.000 0.000 NA   NA
 11442122 3616997   Pmen_3747     FALSE NA 8954.000 0.000 NA   NA
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 11726877 3616997   Pmen_3747     FALSE NA 8954.000 0.000 NA   NA
 11442123 3616997   Pmen_3747     FALSE NA 8983.000 0.000 NA   NA
 11584486 3616997   Pmen_3747     FALSE NA 8983.000 0.000 NA   NA
 11726878 3616997   Pmen_3747     FALSE NA 8983.000 0.000 NA   NA
 11442124 3616997   Pmen_3747     FALSE NA 9015.000 0.000 NA   NA
 11584487 3616997   Pmen_3747     FALSE NA 9015.000 0.000 NA   NA
 11726879 3616997   Pmen_3747     FALSE NA 9015.000 0.000 NA   NA
 11442125 3616997   Pmen_3747     FALSE NA 9044.000 0.000 NA   NA
 11584488 3616997   Pmen_3747     FALSE NA 9044.000 0.000 NA   NA
 11726880 3616997   Pmen_3747     FALSE NA 9044.000 0.000 NA   NA
 11442126 3616997   Pmen_3747     FALSE NA 9076.000 0.000 NA   NA
 11584489 3616997   Pmen_3747     FALSE NA 9076.000 0.000 NA   NA
 11726881 3616997   Pmen_3747     FALSE NA 9076.000 0.000 NA   NA
 3617004 3617005 Pmen_3754 Pmen_3755     TRUE 0.993 0.000 0.509 NA   NA
 3617005 3617006 Pmen_3755 Pmen_3756     TRUE 0.994 0.000 0.589 NA   NA
 3617006 3617007 Pmen_3756 Pmen_3757     TRUE 0.984 -25.000 0.444 NA   NA
 3617007 3617008 Pmen_3757 Pmen_3758     TRUE 0.919 3.000 0.035 NA   NA
 3617008 3617009 Pmen_3758 Pmen_3759     TRUE 0.848 11.000 0.026 NA   NA
 3617009 3617010 Pmen_3759 Pmen_3760     TRUE 0.973 -3.000 0.190 NA   NA
 3617011 3617012 Pmen_3761 Pmen_3762     TRUE 0.988 -3.000 0.364 NA   NA
 3617013 3617014 Pmen_3763 Pmen_3764     FALSE 0.012 1186.000 0.000 1.000   NA
 3617014 3617015 Pmen_3764 Pmen_3765     TRUE 0.965 -3.000 0.127 1.000   NA
 3617015 3617016 Pmen_3765 Pmen_3766     FALSE 0.396 138.000 0.036 0.080   NA
 3617016 3617017 Pmen_3766 Pmen_3767     FALSE 0.040 238.000 0.000 1.000 N NA
 3617017 3617018 Pmen_3767 Pmen_3768     TRUE 0.998 -3.000 0.706 1.000 Y NA
 3617018 3617019 Pmen_3768 Pmen_3769     TRUE 0.972 3.000 0.000 1.000 Y NA
 3617019 3617020 Pmen_3769 Pmen_3770     TRUE 0.947 -6.000 0.100 NA   NA
 3617020 3617021 Pmen_3770 Pmen_3771     FALSE 0.119 91.000 0.000 NA   NA
 3617022 3617023 Pmen_3772 Pmen_3773   thiE TRUE 0.993 -3.000 0.209 1.000 Y NA
 3617023 3617024 Pmen_3773 Pmen_3774 thiE   TRUE 0.956 23.000 0.173 1.000 Y NA
 3617024 3617025 Pmen_3774 Pmen_3775     TRUE 0.896 0.000 0.011 NA   NA
 3617025 3617026 Pmen_3775 Pmen_3776     FALSE 0.413 108.000 0.136 NA   NA
 3617028 3617029 Pmen_3778 Pmen_3779     FALSE 0.128 121.000 0.000 1.000   NA
 3617029 3617030 Pmen_3779 Pmen_3780     TRUE 0.866 27.000 0.220 1.000 N NA
 3617030 3617031 Pmen_3780 Pmen_3781     TRUE 0.988 -7.000 0.457 NA   NA
 3617031 3617032 Pmen_3781 Pmen_3782     TRUE 0.774 32.000 0.150 NA   NA
 3617032 3617033 Pmen_3782 Pmen_3783   lnt TRUE 0.787 116.000 0.557 NA N NA
 3617034 3617035 Pmen_3784 Pmen_3785     TRUE 0.946 24.000 0.435 NA   NA
 3617036 3617037 Pmen_3786 Pmen_3787 leuS   TRUE 0.583 55.000 0.182 NA N NA
 3617037 3617038 Pmen_3787 Pmen_3788   holA TRUE 0.594 56.000 0.199 NA N NA
 3617038 3617039 Pmen_3788 Pmen_3789 holA   FALSE 0.064 223.000 0.007 NA   NA
 3617039 3617040 Pmen_3789 Pmen_3790     TRUE 0.741 34.000 0.123 NA   NA
 3617040 3617041 Pmen_3790 Pmen_3791     FALSE 0.114 164.000 0.003 1.000 N NA
 3617042 3617043 Pmen_3792 Pmen_3793     TRUE 0.969 6.000 0.219 NA   NA
 3617043 3617044 Pmen_3793 Pmen_3794     FALSE 0.380 65.000 0.074 NA   NA
 3617044 3617045 Pmen_3794 Pmen_3795     TRUE 0.800 114.000 0.241 NA Y NA
 3617045 3617046 Pmen_3795 Pmen_3796     TRUE 0.995 -3.000 0.298 NA Y NA
 3617046 3617047 Pmen_3796 Pmen_3797     TRUE 0.846 18.000 0.096 NA N NA
 3617047 3617048 Pmen_3797 Pmen_3798     TRUE 0.887 -3.000 0.006 1.000 N NA
 3617048 3617049 Pmen_3798 Pmen_3799     TRUE 0.837 7.000 0.005 NA   NA
 3617049 3617050 Pmen_3799 Pmen_3800     TRUE 0.975 10.000 0.307 NA   NA
 3617050 3617051 Pmen_3800 Pmen_3801   nadD TRUE 0.678 50.000 0.221 NA   NA
 3617051 3617052 Pmen_3801 Pmen_3802 nadD proA TRUE 0.970 1.000 0.170 1.000 N NA
 3617055 3617056 Pmen_3805 Pmen_3806     TRUE 0.913 -3.000 0.019 1.000   NA
 3617057 3617058 Pmen_3807 Pmen_3808     TRUE 0.889 8.000 0.027 1.000   NA
 3617058 3617059 Pmen_3808 Pmen_3809     TRUE 0.997 -3.000 0.818 1.000   NA
 3617060 3617061 Pmen_3810 Pmen_3811     TRUE 0.550 134.000 0.243 1.000   NA
 3617061 3617062 Pmen_3811 Pmen_3812     TRUE 0.683 31.000 0.056 1.000   NA
 3617062 3617063 Pmen_3812 Pmen_3813     TRUE 0.579 17.000 0.000 NA   NA
 3617063 3617064 Pmen_3813 Pmen_3814     TRUE 0.803 4.000 0.000 NA   NA
 3617065 3617066 Pmen_3815 Pmen_3816     TRUE 0.963 39.000 0.280 0.022 Y NA
 3617067 3617068 Pmen_3817 Pmen_3818     FALSE 0.129 111.000 0.000 1.000   NA
 3617068 3617069 Pmen_3818 Pmen_3819     FALSE 0.395 60.000 0.000 0.048   NA
 3617069 3617070 Pmen_3819 Pmen_3820     FALSE 0.208 255.000 0.000 1.000 Y NA
 3617070 3617071 Pmen_3820 Pmen_3821     FALSE 0.315 39.000 0.000 1.000   NA
 3617071 3617072 Pmen_3821 Pmen_3822     FALSE 0.090 155.000 0.000 NA   NA
 3617073 3617074 Pmen_3823 Pmen_3824     TRUE 0.834 -3.000 0.000 NA   NA
 3617074 3617075 Pmen_3824 Pmen_3825     TRUE 0.762 9.000 0.000 NA   NA
 3617075 3617076 Pmen_3825 Pmen_3826     TRUE 0.979 1.000 0.235 1.000 N NA
 3617077 3617078 Pmen_3827 Pmen_3828     FALSE 0.178 95.000 0.010 NA   NA
 3617078 3617079 Pmen_3828 Pmen_3829     FALSE 0.225 78.000 0.022 NA   NA
 3617079 3617080 Pmen_3829 Pmen_3830     FALSE 0.022 296.000 0.000 NA N NA
 3617082 3617083 Pmen_3832 Pmen_3833     TRUE 0.790 25.000 0.100 1.000 N NA
 3617084 3617085 Pmen_3834 Pmen_3835     TRUE 0.959 -3.000 0.100 1.000 N NA
 3617085 3617086 Pmen_3835 Pmen_3836     TRUE 0.994 -3.000 0.412 0.048 N NA
 3617086 3617087 Pmen_3836 Pmen_3837     TRUE 0.982 44.000 0.857 1.000 Y NA
 3617088 3617089 Pmen_3838 Pmen_3839     FALSE 0.120 85.000 0.000 NA   NA
 3617089 3617090 Pmen_3839 Pmen_3840     TRUE 0.632 16.000 0.000 1.000   NA
 3617090 3617091 Pmen_3840 Pmen_3841     TRUE 0.972 -3.000 0.177 1.000 N NA
 3617091 3617092 Pmen_3841 Pmen_3842     FALSE 0.107 145.000 0.000 1.000 N NA
 3617092 3617093 Pmen_3842 Pmen_3843     TRUE 0.750 11.000 0.000 1.000   NA
 3617093 3617094 Pmen_3843 Pmen_3844     FALSE 0.138 83.000 0.000 1.000   NA
 3617094 3617095 Pmen_3844 Pmen_3845     FALSE 0.144 364.000 0.009 1.000 Y NA
 3617096 3617097 Pmen_3846 Pmen_3847     TRUE 0.943 2.000 0.066 NA   NA
 3617097 3617098 Pmen_3847 Pmen_3848   ribA TRUE 0.939 -3.000 0.050 NA   NA
 3617098 3617099 Pmen_3848 Pmen_3849 ribA   FALSE 0.286 73.000 0.035 1.000   NA
 3617099 3617100 Pmen_3849 Pmen_3850     TRUE 0.833 19.000 0.075 1.000   NA
 3617100 3617101 Pmen_3850 Pmen_3851     TRUE 0.856 -22.000 0.018 1.000 N NA
 3617101 3617102 Pmen_3851 Pmen_3852     TRUE 0.960 10.000 0.206 1.000 N NA
 3617102 3617103 Pmen_3852 Pmen_3853   nusB TRUE 0.979 -3.000 0.225 1.000 N NA
 3617103 3617104 Pmen_3853 Pmen_3854 nusB ribH TRUE 0.988 -3.000 0.347 1.000 N NA
 3617104 3617105 Pmen_3854 Pmen_3855 ribH   TRUE 0.475 269.000 0.049 0.001 Y NA
 3617105 3617106 Pmen_3855 Pmen_3856     TRUE 0.967 13.000 0.065 1.000 Y NA
 3617106 3617107 Pmen_3856 Pmen_3857     TRUE 0.465 456.000 0.456 1.000 Y NA
 3617107 3617108 Pmen_3857 Pmen_3858     TRUE 0.982 -3.000 0.277 NA N NA
 3617109 3617110 Pmen_3859 Pmen_3860     TRUE 0.991 -3.000 0.462 NA   NA
 3617110 3617111 Pmen_3860 Pmen_3861     FALSE 0.315 55.000 0.022 1.000   NA
 3617113 3617114 Pmen_3863 Pmen_3864     TRUE 0.664 100.000 0.336 NA   NA
 3617114 3617115 Pmen_3864 Pmen_3865     TRUE 0.998 2.000 0.605 1.000 Y NA
 3617115 3617116 Pmen_3865 Pmen_3866     TRUE 0.472 59.000 0.114 NA   NA
 3617117 3617118 Pmen_3867 Pmen_3868     TRUE 0.837 3.000 0.000 1.000   NA
 3617118 3617119 Pmen_3868 Pmen_3869     TRUE 0.986 0.000 0.214 0.084 N NA
 3617119 3617120 Pmen_3869 Pmen_3870     TRUE 0.994 12.000 0.333 0.063 Y NA
 3617120 3617121 Pmen_3870 Pmen_3871     TRUE 0.992 -7.000 0.091 0.010 Y NA
 3617121 3617122 Pmen_3871 Pmen_3872     TRUE 0.992 -3.000 0.500 NA   NA
 3617124 3617125 Pmen_3874 Pmen_3875     TRUE 0.994 -7.000 0.133 0.002 Y NA
 3617125 3617126 Pmen_3875 Pmen_3876     TRUE 0.566 19.000 0.000 1.000 N NA
 3617126 3617127 Pmen_3876 Pmen_3877     TRUE 0.826 10.000 0.007 1.000 N NA
 3617128 3617129 Pmen_3878 Pmen_3879 uvrA   FALSE 0.173 100.000 0.002 1.000   NA
 3617130 3617131 Pmen_3880 Pmen_3881     TRUE 0.558 118.000 0.012 1.000 Y NA
 3617131 3617132 Pmen_3881 Pmen_3882     FALSE 0.067 183.000 0.000 1.000 N NA
 3617132 3617133 Pmen_3882 Pmen_3883   rplQ FALSE 0.053 201.000 0.000 1.000 N NA
 3617133 3617134 Pmen_3883 Pmen_3884 rplQ   TRUE 0.950 45.000 0.873 1.000 N NA
 3617134 3617135 Pmen_3884 Pmen_3885   rpsD TRUE 0.964 23.000 0.549 1.000 N NA
 3617135 3617136 Pmen_3885 Pmen_3886 rpsD   TRUE 0.994 18.000 0.509 0.011 Y NA
 3617136 3617137 Pmen_3886 Pmen_3887   rpsM TRUE 0.994 31.000 0.810 0.009 Y NA
 3617137 3617138 Pmen_3887 Pmen_3888 rpsM rpmJ TRUE 0.793 134.000 0.086 0.009 Y NA
 3617138 3617139 Pmen_3888 Pmen_3889 rpmJ secY TRUE 0.640 29.000 0.036 1.000 N NA
 3617139 3617140 Pmen_3889 Pmen_3890 secY rplO TRUE 0.996 1.000 0.730 1.000 N NA
 3617140 3617141 Pmen_3890 Pmen_3891 rplO rpmD TRUE 0.999 3.000 0.653 0.001 Y NA
 3617141 3617142 Pmen_3891 Pmen_3892 rpmD rpsE TRUE 0.999 3.000 0.789 0.011 Y NA
 3617142 3617143 Pmen_3892 Pmen_3893 rpsE rplR TRUE 0.999 4.000 0.814 0.011 Y NA
 3617143 3617144 Pmen_3893 Pmen_3894 rplR rplF TRUE 0.998 12.000 0.815 0.009 Y NA
 3617144 3617145 Pmen_3894 Pmen_3895 rplF rpsH TRUE 0.998 13.000 0.808 0.009 Y NA
 3617145 3617146 Pmen_3895 Pmen_3896 rpsH rpsN TRUE 0.814 193.000 0.295 0.009 Y NA
 3617146 3617147 Pmen_3896 Pmen_3897 rpsN rplE TRUE 0.991 16.000 0.309 0.009 Y NA
 3617147 3617148 Pmen_3897 Pmen_3898 rplE rplX TRUE 0.997 20.000 0.758 0.009 Y NA
 3617148 3617149 Pmen_3898 Pmen_3899 rplX rplN TRUE 0.998 12.000 0.810 0.011 Y NA
 3617149 3617150 Pmen_3899 Pmen_3900 rplN rpsQ TRUE 0.996 24.000 0.791 0.011 Y NA
 3617150 3617151 Pmen_3900 Pmen_3901 rpsQ   TRUE 0.999 3.000 0.828 0.009 Y NA
 3617151 3617152 Pmen_3901 Pmen_3902   rplP TRUE 0.999 0.000 0.802 0.009 Y NA
 3617152 3617153 Pmen_3902 Pmen_3903 rplP rpsC TRUE 0.998 13.000 0.828 0.011 Y NA
 3617153 3617154 Pmen_3903 Pmen_3904 rpsC rplV TRUE 0.998 14.000 0.719 0.011 Y NA
 3617154 3617155 Pmen_3904 Pmen_3905 rplV rpsS TRUE 0.998 12.000 0.769 0.011 Y NA
 3617155 3617156 Pmen_3905 Pmen_3906 rpsS rplB TRUE 0.997 17.000 0.820 0.011 Y NA
 3617156 3617157 Pmen_3906 Pmen_3907 rplB rplW TRUE 0.996 15.000 0.849 1.000 Y NA
 3617157 3617158 Pmen_3907 Pmen_3908 rplW rplD TRUE 0.997 -3.000 0.513 1.000 Y NA
 3617158 3617159 Pmen_3908 Pmen_3909 rplD rplC TRUE 0.995 15.000 0.486 0.009 Y NA
 3617159 3617160 Pmen_3909 Pmen_3910 rplC rpsJ TRUE 0.912 84.000 0.307 0.011 Y NA
 3617160 3617161 Pmen_3910 Pmen_3911 rpsJ   TRUE 0.810 156.000 0.318 1.000 Y NA
 3617161 3617162 Pmen_3911 Pmen_3912     TRUE 0.987 31.000 0.400 0.001 Y NA
 3617162 3617163 Pmen_3912 Pmen_3913     TRUE 0.983 31.000 0.579 1.000 Y NA
 3617163 3617164 Pmen_3913 Pmen_3914   rpsL TRUE 0.964 105.000 0.620 0.002 Y NA
 3617164 3617165 Pmen_3914 Pmen_3915 rpsL   FALSE 0.364 147.000 0.122 1.000 N NA
 3617165 3617166 Pmen_3915 Pmen_3916   rpoB TRUE 0.957 64.000 0.851 0.000   NA
 3617166 3617167 Pmen_3916 Pmen_3917 rpoB rplL FALSE 0.294 223.000 0.223 1.000   NA
 3617167 3617168 Pmen_3917 Pmen_3918 rplL rplJ TRUE 0.979 81.000 0.884 0.009 Y NA
 3617168 3617169 Pmen_3918 Pmen_3919 rplJ rplA TRUE 0.786 212.000 0.302 0.011 Y NA
 3617169 3617170 Pmen_3919 Pmen_3920 rplA rplK TRUE 0.999 0.000 0.838 0.011 Y NA
 3617170 3617171 Pmen_3920 Pmen_3921 rplK nusG TRUE 0.841 119.000 0.681 1.000 N NA
 3617171 3617172 Pmen_3921 Pmen_3922 nusG secE TRUE 0.994 10.000 0.843 1.000 N NA
 3617172 3617173 Pmen_3922 Pmen_R0066 secE   FALSE 0.254 43.000 0.000 NA   NA
 3617173 3617174 Pmen_R0066 Pmen_3923     FALSE 0.179 54.000 0.000 NA   NA
 3617174 3617175 Pmen_3923 Pmen_R0067     FALSE 0.120 85.000 0.000 NA   NA
 3617175 3617176 Pmen_R0067 Pmen_R0068     FALSE 0.424 27.000 0.000 NA   NA
 3617176 3617177 Pmen_R0068 Pmen_R0069     TRUE 0.449 25.000 0.000 NA   NA
 3617177 3617178 Pmen_R0069 Pmen_3924     FALSE 0.103 142.000 0.000 NA   NA
 3617178 3617179 Pmen_3924 Pmen_3925     TRUE 0.845 9.000 0.012 NA   NA
 3617179 3617180 Pmen_3925 Pmen_3926     TRUE 0.952 -10.000 0.147 1.000 N NA
 3617180 3617181 Pmen_3926 Pmen_R0070     FALSE 0.020 333.000 0.000 NA   NA
 3617181 3617182 Pmen_R0070 Pmen_R0071     FALSE 0.095 152.000 0.000 NA   NA
 3617182 3617183 Pmen_R0071 Pmen_R0072     FALSE 0.033 252.000 0.000 NA   NA
 3617183 3617184 Pmen_R0072 Pmen_R0073     TRUE 0.481 23.000 0.000 NA   NA
 3617184 3617185 Pmen_R0073 Pmen_R0074     FALSE 0.120 85.000 0.000 NA   NA
 3617185 3617186 Pmen_R0074 Pmen_3927     FALSE 0.011 562.000 0.000 NA   NA
 3617187 3617188 Pmen_3928 Pmen_3929   anmK TRUE 0.965 4.000 0.184 NA N NA
 3617189 3617190 Pmen_3930 Pmen_3931     FALSE 0.173 74.000 0.003 NA   NA
 3617190 3617191 Pmen_3931 Pmen_3932     TRUE 0.910 7.000 0.047 NA   NA
 3617191 3617192 Pmen_3932 Pmen_3933   argC TRUE 0.887 -3.000 0.008 NA   NA
 3617193 3617194 Pmen_3934 Pmen_3935     TRUE 0.844 11.000 0.024 NA   NA
 3617194 3617195 Pmen_3935 Pmen_3936     TRUE 0.834 -3.000 0.000 NA   NA
 3617195 3617196 Pmen_3936 Pmen_3937     FALSE 0.116 101.000 0.000 NA   NA
 3617196 3617197 Pmen_3937 Pmen_3938     TRUE 0.912 10.000 0.057 1.000   NA
 3617199 3617200 Pmen_3940 Pmen_3941     FALSE 0.131 68.000 0.000 NA   NA
 3617203 3617204 Pmen_3944 Pmen_3945 trpC trpD TRUE 0.995 -3.000 0.293 1.000 Y NA
 3617204 3617205 Pmen_3945 Pmen_3946 trpD   TRUE 0.989 -3.000 0.105 1.000 Y NA
 3617206 3617207 Pmen_3947 Pmen_3948     TRUE 0.579 17.000 0.000 NA   NA
 3617208 3617209 Pmen_3949 Pmen_3950     FALSE 0.046 215.000 0.000 NA   NA
 3617209 3617210 Pmen_3950 Pmen_3951     TRUE 0.834 -3.000 0.000 NA   NA
 3617210 3617211 Pmen_3951 Pmen_3952     FALSE 0.022 311.000 0.000 NA   NA
 3617211 3617212 Pmen_3952 Pmen_3953     TRUE 0.834 -3.000 0.000 NA   NA
 3617212 3617213 Pmen_3953 Pmen_3954     TRUE 0.838 0.000 0.000 NA   NA
 3617213 3617214 Pmen_3954 Pmen_3955     TRUE 0.995 6.000 0.800 NA   NA
 3617214 3617215 Pmen_3955 Pmen_3956     TRUE 0.774 -10.000 0.000 NA   NA
 3617215 3617216 Pmen_3956 Pmen_3957     FALSE 0.313 37.000 0.000 NA   NA
 3617216 3617217 Pmen_3957 Pmen_3958     TRUE 0.838 0.000 0.000 NA   NA
 3617217 3617218 Pmen_3958 Pmen_3959     TRUE 0.834 -3.000 0.000 NA   NA
 3617218 3617219 Pmen_3959 Pmen_3960     TRUE 0.817 3.000 0.000 NA   NA
 3617219 3617220 Pmen_3960 Pmen_3961     TRUE 0.997 4.000 1.000 NA   NA
 3617220 3617221 Pmen_3961 Pmen_3962     FALSE 0.285 39.000 0.000 NA   NA
 3617221 3617222 Pmen_3962 Pmen_3963     TRUE 0.838 0.000 0.000 NA   NA
 3617222 3617223 Pmen_3963 Pmen_3964     FALSE 0.424 27.000 0.000 NA   NA
 3617223 3617224 Pmen_3964 Pmen_3965     FALSE 0.012 524.000 0.000 NA   NA
 3617224 3617225 Pmen_3965 Pmen_3966     TRUE 0.463 24.000 0.000 NA   NA
 3617225 3617226 Pmen_3966 Pmen_3967     TRUE 0.803 4.000 0.000 NA   NA
 3617226 3617227 Pmen_3967 Pmen_3968     TRUE 0.834 -3.000 0.000 NA   NA
 3617227 3617228 Pmen_3968 Pmen_3969     TRUE 0.817 3.000 0.000 NA   NA
 3617228 3617229 Pmen_3969 Pmen_3970     FALSE 0.029 267.000 0.000 NA   NA
 3617229 3617230 Pmen_3970 Pmen_3971     TRUE 0.551 71.000 0.214 NA   NA
 3617230 3617231 Pmen_3971 Pmen_3972     TRUE 0.965 20.000 0.500 NA   NA
 3617231 3617232 Pmen_3972 Pmen_3973     FALSE 0.431 68.000 0.120 NA   NA
 3617232 3617233 Pmen_3973 Pmen_3974     TRUE 0.758 -16.000 0.000 NA   NA
 3617233 3617234 Pmen_3974 Pmen_3975     FALSE 0.107 135.000 0.000 NA   NA
 3617234 3617235 Pmen_3975 Pmen_3976     TRUE 0.817 3.000 0.000 NA   NA
 3617235 3617236 Pmen_3976 Pmen_3977     FALSE 0.012 501.000 0.000 NA   NA
 3617236 3617237 Pmen_3977 Pmen_3978     TRUE 0.995 -3.000 0.667 NA   NA
 3617237 3617238 Pmen_3978 Pmen_3979     TRUE 0.790 -7.000 0.000 NA   NA
 3617238 3617239 Pmen_3979 Pmen_3980     TRUE 0.834 -3.000 0.000 NA   NA
 3617239 3617240 Pmen_3980 Pmen_3981     TRUE 0.790 -7.000 0.000 NA   NA
 3617240 3617241 Pmen_3981 Pmen_3982     FALSE 0.014 408.000 0.000 NA   NA
 3617242 3617243 Pmen_3983 Pmen_3984     FALSE 0.039 235.000 0.000 NA   NA
 3617243 3617244 Pmen_3984 Pmen_3985     TRUE 0.834 -3.000 0.000 NA   NA
 3617244 3617245 Pmen_3985 Pmen_3986     TRUE 0.992 11.000 0.750 NA   NA
 3617245 3617246 Pmen_3986 Pmen_3987     FALSE 0.087 157.000 0.000 NA   NA
 3617246 3617247 Pmen_3987 Pmen_3988     TRUE 0.834 -3.000 0.000 NA   NA
 3617247 3617248 Pmen_3988 Pmen_3989     TRUE 0.834 -3.000 0.000 NA   NA
 3617248 3617249 Pmen_3989 Pmen_3990     FALSE 0.127 75.000 0.000 NA   NA
 3617249 3617250 Pmen_3990 Pmen_3991     TRUE 0.834 -3.000 0.000 NA   NA
 3617250 3617251 Pmen_3991 Pmen_3992     TRUE 0.834 -3.000 0.000 NA   NA
 3617254 3617255 Pmen_3995 Pmen_3996     TRUE 0.826 2.000 0.000 NA   NA
 3617255 3617256 Pmen_3996 Pmen_3997     FALSE 0.056 197.000 0.000 1.000 N NA
 3617256 3617257 Pmen_3997 Pmen_3998     FALSE 0.220 271.000 0.233 1.000   NA
 3617257 3617258 Pmen_3998 Pmen_3999     TRUE 0.964 -3.000 0.120 1.000   NA
 3617258 3617259 Pmen_3999 Pmen_4000     FALSE 0.140 153.000 0.007 1.000 N NA
 3617259 3617260 Pmen_4000 Pmen_4001     TRUE 0.771 158.000 0.145 0.048 Y NA
 3617260 3617261 Pmen_4001 Pmen_4002     TRUE 0.618 209.000 0.108 0.048 Y NA
 3617261 3617262 Pmen_4002 Pmen_4003     TRUE 0.950 54.000 0.556 1.000 Y NA
 3617262 3617263 Pmen_4003 Pmen_4004     FALSE 0.102 302.000 0.111 1.000 N NA
 3617263 3617264 Pmen_4004 Pmen_4005     TRUE 0.987 -3.000 0.000 0.022 Y NA
 3617266 3617267 Pmen_4007 Pmen_4008     TRUE 0.907 1.000 0.019 1.000 N NA
 3617267 3617268 Pmen_4008 Pmen_4009     TRUE 0.995 -3.000 0.642 NA   NA
 3617269 3617270 Pmen_4010 Pmen_4011     TRUE 0.922 -19.000 0.070 1.000   NA
 3617270 3617271 Pmen_4011 Pmen_4012   pdxA TRUE 0.803 99.000 0.561 1.000   NA
 3617271 3617272 Pmen_4012 Pmen_4013 pdxA ksgA FALSE 0.268 215.000 0.197 1.000 N NA
 3617272 3617273 Pmen_4013 Pmen_4014 ksgA apaG TRUE 0.707 30.000 0.078 NA N NA
 3617273 3617274 Pmen_4014 Pmen_4015 apaG apaH TRUE 0.983 0.000 0.267 NA   NA
 3617274 3617275 Pmen_4015 Pmen_4016 apaH glpE TRUE 0.520 42.000 0.045 1.000   NA
 3617275 3617276 Pmen_4016 Pmen_4017 glpE   FALSE 0.024 283.000 0.000 NA N NA
 3617276 3617277 Pmen_4017 Pmen_4018     TRUE 0.855 75.000 0.683 NA   NA
 3617277 3617278 Pmen_4018 Pmen_4019     TRUE 0.992 11.000 0.761 NA   NA
 3617278 3617279 Pmen_4019 Pmen_4020     TRUE 0.728 14.000 0.007 NA   NA
 3617279 3617280 Pmen_4020 Pmen_4021   cca FALSE 0.166 114.000 0.008 NA   NA
 3617281 3617282 Pmen_4022 Pmen_4023     TRUE 0.996 -9.000 0.500 1.000 Y NA
 3617285 3617286 Pmen_4026 Pmen_4027 rpsU dnaG FALSE 0.287 146.000 0.067 1.000 N NA
 3617286 3617287 Pmen_4027 Pmen_4028 dnaG   TRUE 0.659 68.000 0.299 1.000 N NA
 3617287 3617288 Pmen_4028 Pmen_4029     FALSE 0.300 151.000 0.013 0.079 N NA
 3617288 3617289 Pmen_4029 Pmen_R0075     TRUE 0.579 17.000 0.000 NA   NA
 3617289 3617290 Pmen_R0075 Pmen_4030     FALSE 0.040 232.000 0.000 NA   NA
 3617290 3617291 Pmen_4030 Pmen_4031     FALSE 0.050 202.000 0.000 NA   NA
 3617291 3617292 Pmen_4031 Pmen_4032     TRUE 0.834 -3.000 0.000 NA   NA
 3617292 3617293 Pmen_4032 Pmen_4033     FALSE 0.023 299.000 0.000 NA   NA
 3617293 3617294 Pmen_4033 Pmen_4034     FALSE 0.106 153.000 0.000 1.000   NA
 3617294 3617295 Pmen_4034 Pmen_4035     TRUE 0.996 -3.000 0.750 NA   NA
 3617295 3617296 Pmen_4035 Pmen_4036     TRUE 0.648 123.000 0.333 NA   NA
 3617296 3617297 Pmen_4036 Pmen_4037     FALSE 0.017 367.000 0.000 NA   NA
 3617297 3617298 Pmen_4037 Pmen_4038     TRUE 0.952 3.000 0.097 NA   NA
 3617303 3617304 Pmen_4043 Pmen_4044     FALSE 0.125 88.000 0.000 1.000 N NA
 3617304 3617305 Pmen_4044 Pmen_4045     TRUE 0.999 -10.000 0.971 NA Y NA
 3617305 3617306 Pmen_4045 Pmen_4046     TRUE 0.891 158.000 0.568 NA Y NA
 3617307 3617308 Pmen_4047 Pmen_4048     FALSE 0.015 428.000 0.000 1.000 N NA
 3617308 3617309 Pmen_4048 Pmen_4049     FALSE 0.133 75.000 0.000 1.000 N NA
 3617309 3617310 Pmen_4049 Pmen_4050     FALSE 0.108 142.000 0.000 1.000 N NA
 3617311 3617312 Pmen_4051 Pmen_4052     TRUE 0.711 55.000 0.031 1.000 Y NA
 3617312 3617313 Pmen_4052 Pmen_4053     FALSE 0.078 177.000 0.000 1.000   NA
 3617316 3617317 Pmen_4056 Pmen_4057     FALSE 0.114 105.000 0.000 NA   NA
 3617317 3617318 Pmen_4057 Pmen_4058     TRUE 0.826 2.000 0.000 NA   NA
 3617319 3617320 Pmen_4059 Pmen_4060     TRUE 0.759 68.000 0.444 NA   NA
 3617320 3617321 Pmen_4060 Pmen_4061     TRUE 0.965 -3.000 0.040 0.083 N NA
 3617321 3617322 Pmen_4061 Pmen_4062     TRUE 0.997 11.000 0.556 0.062 Y NA
 3617322 3617323 Pmen_4062 Pmen_4063     FALSE 0.220 95.000 0.023 1.000 N NA
 3617323 3617324 Pmen_4063 Pmen_4064     TRUE 0.604 62.000 0.220 1.000 N NA
 3617325 3617326 Pmen_4065 Pmen_4066     TRUE 0.983 11.000 0.450 1.000 N NA
 3617326 3617327 Pmen_4066 Pmen_4067     FALSE 0.017 404.000 0.000 1.000   NA
 3617328 3617329 Pmen_4068 Pmen_4069     FALSE 0.017 382.000 0.000 1.000 N NA
 3617329 3617330 Pmen_4069 Pmen_4070     TRUE 0.922 118.000 0.315 0.001 Y NA
 3617330 3617331 Pmen_4070 Pmen_4071     TRUE 0.450 40.000 0.020 1.000   NA
 3617331 3617332 Pmen_4071 Pmen_4072     FALSE 0.210 92.000 0.016 1.000   NA
 3617332 3617333 Pmen_4072 Pmen_4073     TRUE 0.958 -10.000 0.171 1.000 N NA
 3617334 3617335 Pmen_4074 Pmen_4075     FALSE 0.125 80.000 0.000 NA   NA
 3617335 3617336 Pmen_4075 Pmen_4076     TRUE 0.531 20.000 0.000 NA   NA
 3617336 3617337 Pmen_4076 Pmen_4077     TRUE 0.791 5.000 0.000 NA   NA
 3617338 3617339 Pmen_4078 Pmen_4079     FALSE 0.028 295.000 0.000 1.000   NA
 3617339 3617340 Pmen_4079 Pmen_4080     TRUE 0.462 166.000 0.250 1.000 N NA
 3617340 3617341 Pmen_4080 Pmen_4081     TRUE 0.544 115.000 0.227 1.000 N NA
 3617341 3617342 Pmen_4081 Pmen_4082     FALSE 0.149 171.000 0.028 NA   NA
 3617342 3617343 Pmen_4082 Pmen_4083     FALSE 0.331 53.000 0.028 NA   NA
 3617343 3617344 Pmen_4083 Pmen_4084   bioD TRUE 0.574 100.000 0.244 1.000   NA
 3617344 3617345 Pmen_4084 Pmen_4085 bioD   FALSE 0.128 412.000 0.063 0.001 N NA
 3617345 3617346 Pmen_4085 Pmen_4086     FALSE 0.362 163.000 0.163 1.000   NA
 3617346 3617347 Pmen_4086 Pmen_4087     TRUE 0.945 -7.000 0.092 1.000   NA
 3617347 3617348 Pmen_4087 Pmen_4088     TRUE 0.927 49.000 0.168 0.001 Y NA
 3617349 3617350 Pmen_4089 Pmen_4090     FALSE 0.327 43.000 0.003 NA   NA
 3617350 3617351 Pmen_4090 Pmen_4091     FALSE 0.238 61.000 0.009 1.000   NA
 3617351 3617352 Pmen_4091 Pmen_4092     FALSE 0.217 78.000 0.019 NA   NA
 3617352 3617353 Pmen_4092 Pmen_4093     FALSE 0.041 313.000 0.020 NA   NA
 3617354 3617355 Pmen_4094 Pmen_4095     TRUE 0.775 35.000 0.048 0.052 N NA
 3617356 3617357 Pmen_4096 Pmen_4097     FALSE 0.178 140.000 0.015 1.000 N NA
 3617357 3617358 Pmen_4097 Pmen_4098     TRUE 0.989 -3.000 0.392 1.000 N NA
 3617359 3617360 Pmen_4099 Pmen_4100     FALSE 0.047 213.000 0.000 NA   NA
 3617360 3617361 Pmen_4100 Pmen_4101     FALSE 0.266 92.000 0.040 NA   NA
 3617361 3617362 Pmen_4101 Pmen_4102     TRUE 0.996 7.000 0.916 NA   NA
 3617366 3617367 Pmen_4106 Pmen_4107     FALSE 0.365 49.000 0.029 NA   NA
 3617368 3617369 Pmen_4108 Pmen_4109     FALSE 0.018 389.000 0.000 1.000   NA
 3617369 3617370 Pmen_4109 Pmen_4110     FALSE 0.102 155.000 0.000 1.000   NA
 3617370 3617371 Pmen_4110 Pmen_4111     TRUE 0.982 -3.000 0.254 1.000   NA
 3617371 3617372 Pmen_4111 Pmen_4112     FALSE 0.025 288.000 0.000 NA   NA
 3617372 3617373 Pmen_4112 Pmen_4113     FALSE 0.106 136.000 0.000 NA   NA
 3617374 3617375 Pmen_4114 Pmen_4115     TRUE 0.531 20.000 0.000 NA   NA
 3617376 3617377 Pmen_4116 Pmen_4117     FALSE 0.081 162.000 0.000 NA   NA
 3617377 3617378 Pmen_4117 Pmen_4118     FALSE 0.118 92.000 0.000 NA   NA
 3617379 3617380 Pmen_4119 Pmen_4120     TRUE 0.942 145.000 0.776 1.000 Y NA
 3617380 3617381 Pmen_4120 Pmen_4121     FALSE 0.116 143.000 0.000 1.000   NA
 3617381 3617382 Pmen_4121 Pmen_4122     FALSE 0.179 58.000 0.000 1.000   NA
 3617382 3617383 Pmen_4122 Pmen_4123     FALSE 0.407 162.000 0.200 1.000 N NA
 3617383 3617384 Pmen_4123 Pmen_4124     FALSE 0.053 201.000 0.000 1.000 N NA
 3617386 3617387 Pmen_4126 Pmen_4127     FALSE 0.119 272.000 0.103 1.000 N NA
 3617387 3617388 Pmen_4127 Pmen_4128     TRUE 0.602 140.000 0.303 1.000 N NA
 3617388 3617389 Pmen_4128 Pmen_4129     TRUE 0.997 -7.000 0.778 0.002   NA
 3617389 3617390 Pmen_4129 Pmen_4130     TRUE 0.998 -3.000 0.824 0.001   NA
 3617390 3617391 Pmen_4130 Pmen_4131     TRUE 0.952 192.000 0.824 0.001 Y NA
 3617391 3617392 Pmen_4131 Pmen_4132     TRUE 0.763 67.000 0.143 1.000 Y NA
 3617392 3617393 Pmen_4132 Pmen_4133     FALSE 0.011 671.000 0.000 NA   NA
 3617395 3617396 Pmen_4135 Pmen_4136     FALSE 0.127 123.000 0.000 1.000   NA
 3617398 3617399 Pmen_4138 Pmen_4139     FALSE 0.155 151.000 0.011 1.000 N NA
 3617400 3617401 Pmen_4140 Pmen_4141     FALSE 0.043 266.000 0.005 NA   NA
 3617401 3617402 Pmen_4141 Pmen_4142     TRUE 0.997 3.000 0.889 NA   NA
 3617402 3617403 Pmen_4142 Pmen_4143     FALSE 0.052 264.000 0.014 NA   NA
 3617403 3617404 Pmen_4143 Pmen_4144     TRUE 0.999 -3.000 0.587 0.074 Y NA
 3617406 3617407 Pmen_4146 Pmen_4147     TRUE 0.996 0.000 0.748 NA   NA
 3617408 3617409 Pmen_4148 Pmen_4149     TRUE 0.937 88.000 0.436 0.013 Y NA
 3617410 3617411 Pmen_4150 Pmen_4151     TRUE 0.886 18.000 0.158 NA   NA
 3617411 3617412 Pmen_4151 Pmen_4152     TRUE 0.948 10.000 0.152 1.000   NA
 3617412 3617413 Pmen_4152 Pmen_4153     TRUE 0.970 5.000 0.220 NA   NA
 3617413 3617414 Pmen_4153 Pmen_4154     FALSE 0.060 237.000 0.010 NA   NA
 3617414 3617415 Pmen_4154 Pmen_4155   metX FALSE 0.225 132.000 0.027 1.000   NA
 3617415 3617416 Pmen_4155 Pmen_4156 metX   TRUE 0.991 3.000 0.509 NA N NA
 3617416 3617417 Pmen_4156 Pmen_4157     TRUE 0.818 22.000 0.100 NA   NA
 3617417 3617418 Pmen_4157 Pmen_4158     TRUE 0.920 -7.000 0.050 NA   NA
 3617418 3617419 Pmen_4158 Pmen_4159     TRUE 0.978 -3.000 0.218 1.000 N NA
 3617419 3617420 Pmen_4159 Pmen_4160     FALSE 0.032 265.000 0.000 1.000 N NA
 3617420 3617421 Pmen_4160 Pmen_4161     FALSE 0.035 244.000 0.000 NA   NA
 3617421 3617422 Pmen_4161 Pmen_4162     TRUE 0.912 38.000 0.500 NA   NA
 3617422 3617423 Pmen_4162 Pmen_4163     FALSE 0.183 53.000 0.000 NA   NA
 3617423 3617424 Pmen_4163 Pmen_4164     FALSE 0.033 254.000 0.000 NA   NA
 3617425 3617426 Pmen_4165 Pmen_4166   trmB FALSE 0.091 182.000 0.004 NA   NA
 3617426 3617427 Pmen_4166 Pmen_4167 trmB thiG FALSE 0.347 69.000 0.060 1.000   NA
 3617427 3617428 Pmen_4167 Pmen_4168 thiG   TRUE 0.958 20.000 0.130 1.000 Y NA
 3617428 3617429 Pmen_4168 Pmen_4169     FALSE 0.206 171.000 0.058 NA   NA
 3617431 3617432 Pmen_4171 Pmen_4172     FALSE 0.201 63.000 0.005 NA   NA
 3617432 3617433 Pmen_4172 Pmen_4173     FALSE 0.295 113.000 0.054 1.000 N NA
 3617433 3617434 Pmen_4173 Pmen_4174     TRUE 0.985 0.000 0.035 1.000 Y NA
 3617434 3617435 Pmen_4174 Pmen_4175     TRUE 0.978 -3.000 0.117 0.074 N NA
 3617436 3617437 Pmen_4176 Pmen_4177     TRUE 0.997 -3.000 0.598 0.004   NA
 3617437 3617438 Pmen_4177 Pmen_4178     TRUE 0.952 0.000 0.070 1.000   NA
 3617438 3617439 Pmen_4178 Pmen_4179     TRUE 0.834 -3.000 0.000 NA   NA
 3617439 3617440 Pmen_4179 Pmen_4180     FALSE 0.120 86.000 0.000 NA   NA
 3617442 3617443 Pmen_4182 Pmen_4183     TRUE 0.987 -3.000 0.000 0.022 Y NA
 3617443 3617444 Pmen_4183 Pmen_4184     TRUE 0.994 -3.000 0.087 0.016 Y NA
 3617444 3617445 Pmen_4184 Pmen_4185     TRUE 0.993 3.000 0.109 0.016 Y NA
 3617447 3617448 Pmen_4187 Pmen_4188     TRUE 0.816 43.000 0.308 NA   NA
 3617448 3617449 Pmen_4188 Pmen_4189     TRUE 0.892 104.000 0.886 NA   NA
 3617449 3617450 Pmen_4189 Pmen_4190     TRUE 0.826 2.000 0.000 NA   NA
 3617450 3617451 Pmen_4190 Pmen_4191   coaD FALSE 0.126 78.000 0.000 NA   NA
 3617451 3617452 Pmen_4191 Pmen_4192 coaD   FALSE 0.133 158.000 0.005 1.000   NA
 3617452 3617453 Pmen_4192 Pmen_4193     FALSE 0.129 111.000 0.000 1.000   NA
 3617454 3617455 Pmen_4194 Pmen_4195     FALSE 0.119 89.000 0.000 NA   NA
 3617455 3617456 Pmen_4195 Pmen_4196     FALSE 0.126 77.000 0.000 NA   NA
 3617456 3617457 Pmen_4196 Pmen_4197     FALSE 0.177 79.000 0.003 1.000 N NA
 3617457 3617458 Pmen_4197 Pmen_4198     FALSE 0.178 104.000 0.015 NA N NA
 3617459 3617460 Pmen_4199 Pmen_4200     FALSE 0.015 453.000 0.000 1.000   NA
 3617460 3617461 Pmen_4200 Pmen_4201     TRUE 0.946 23.000 0.115 1.000 Y NA
 3617461 3617462 Pmen_4201 Pmen_4202     TRUE 0.858 84.000 0.193 0.047 Y NA
 3617462 3617463 Pmen_4202 Pmen_4203     TRUE 0.997 8.000 0.386 0.047 Y NA
 3617465 3617466 Pmen_4205 Pmen_4206     FALSE 0.171 115.000 0.003 1.000   NA
 3617466 3617467 Pmen_4206 Pmen_4207     FALSE 0.043 238.000 0.000 1.000   NA
 3617468 3617469 Pmen_4208 Pmen_4209     FALSE 0.196 106.000 0.018 NA   NA
 3617470 3617471 Pmen_4210 Pmen_4211     FALSE 0.375 61.000 0.063 NA   NA
 3617471 3617472 Pmen_4211 Pmen_4212     TRUE 0.894 106.000 0.904 NA   NA
 3617473 3617474 Pmen_4213 Pmen_4214 thyA   TRUE 0.971 0.000 0.164 1.000 N NA
 3617474 3617475 Pmen_4214 Pmen_4215     TRUE 0.868 11.000 0.030 1.000   NA
 3617477 3617478 Pmen_4217 Pmen_4218     TRUE 0.848 19.000 0.097 1.000 N NA
 3617480 3617481 Pmen_4220 Pmen_4221     FALSE 0.251 93.000 0.034 NA   NA
 3617482 3617483 Pmen_4222 Pmen_4223     TRUE 0.533 22.000 0.000 1.000   NA
 3617484 3617485 Pmen_4224 Pmen_4225     TRUE 0.862 12.000 0.042 NA   NA
 3617487 3617488 Pmen_4227 Pmen_4228     FALSE 0.128 72.000 0.000 NA   NA
 3617488 3617489 Pmen_4228 Pmen_4229     TRUE 0.458 96.000 0.167 NA   NA
 3617489 3617490 Pmen_4229 Pmen_4230     FALSE 0.431 47.000 0.041 NA   NA
 3617490 3617491 Pmen_4230 Pmen_4231     FALSE 0.350 80.000 0.071 1.000 N NA
 3617503 3617504 Pmen_4243 Pmen_4244     TRUE 0.856 29.000 0.221 1.000 N NA
 3617504 3617505 Pmen_4244 Pmen_4245     TRUE 0.966 2.000 0.166 NA N NA
 3617506 3617507 Pmen_4246 Pmen_4247     TRUE 0.460 108.000 0.170 1.000 N NA
 3617507 3617508 Pmen_4247 Pmen_4248     TRUE 0.904 47.000 0.408 0.021 N NA
 3617509 3617510 Pmen_4249 Pmen_4250     TRUE 0.905 137.000 0.333 0.018 Y NA
 3617510 3617511 Pmen_4250 Pmen_4251     TRUE 0.879 85.000 0.222 0.018 Y NA
 3617511 3617512 Pmen_4251 Pmen_4252     FALSE 0.280 213.000 0.000 1.000 Y NA
 3617512 3617513 Pmen_4252 Pmen_4253     TRUE 0.946 73.000 0.433 0.003 Y NA
 3617513 3617514 Pmen_4253 Pmen_4254     TRUE 0.432 38.000 0.016 NA   NA
 3617514 3617515 Pmen_4254 Pmen_4255   hisH TRUE 0.949 0.000 0.069 NA   NA
 3617515 3617516 Pmen_4255 Pmen_4256 hisH hisB TRUE 0.995 1.000 0.111 0.003 Y NA
 3617517 3617518 Pmen_4257 Pmen_4258     FALSE 0.190 82.000 0.012 NA   NA
 3617518 3617519 Pmen_4258 Pmen_4259     TRUE 0.921 -3.000 0.033 NA N NA
 3617519 3617520 Pmen_4259 Pmen_4260     TRUE 0.965 -3.000 0.150 NA N NA
 3617520 3617521 Pmen_4260 Pmen_R0076     FALSE 0.094 153.000 0.000 NA   NA
 3617521 3617522 Pmen_R0076 Pmen_4261     FALSE 0.117 98.000 0.000 NA   NA
 3617523 3617524 Pmen_4262 Pmen_4263     FALSE 0.321 292.000 0.000 0.001 Y NA
 3617524 3617525 Pmen_4263 Pmen_4264     FALSE 0.115 144.000 0.000 1.000   NA
 3617525 3617526 Pmen_4264 Pmen_4265     TRUE 0.747 10.000 0.000 NA   NA
 3617526 3617527 Pmen_4265 Pmen_4266     FALSE 0.011 655.000 0.000 NA   NA
 3617528 3617529 Pmen_4267 Pmen_4268     TRUE 0.996 -3.000 0.800 NA   NA
 3617529 3617530 Pmen_4268 Pmen_4269     FALSE 0.016 385.000 0.000 NA   NA
 3617530 3617531 Pmen_4269 Pmen_4270     TRUE 0.996 16.000 0.824 1.000 Y NA
 3617531 3617532 Pmen_4270 Pmen_4271     TRUE 0.892 55.000 0.169 0.047 Y NA
 3617532 3617533 Pmen_4271 Pmen_4272     TRUE 0.996 -3.000 0.195 0.010 Y NA
 3617533 3617534 Pmen_4272 Pmen_4273     FALSE 0.187 52.000 0.000 NA   NA
 3617534 3617535 Pmen_4273 Pmen_R0077     FALSE 0.028 272.000 0.000 NA   NA
 3617537 3617538 Pmen_4275 Pmen_4276     TRUE 0.947 13.000 0.036 0.000   NA
 3617539 3617540 Pmen_4277 Pmen_4278     TRUE 0.944 7.000 0.103 1.000   NA
 3617540 3617541 Pmen_4278 Pmen_4279     TRUE 0.958 -3.000 0.103 NA   NA
 3617541 3617542 Pmen_4279 Pmen_4280     TRUE 0.994 -3.000 0.625 NA   NA
 3617542 3617543 Pmen_4280 Pmen_4281     TRUE 0.999 -9.000 0.714 0.011 Y NA
 3617543 3617544 Pmen_4281 Pmen_4282     TRUE 0.993 9.000 0.714 1.000 N NA
 3617544 3617545 Pmen_4282 Pmen_4283     TRUE 0.918 -10.000 0.054 1.000 N NA
 3617545 3617546 Pmen_4283 Pmen_4284     TRUE 0.986 0.000 0.054 1.000 Y NA
 3617546 3617547 Pmen_4284 Pmen_4285     TRUE 0.972 21.000 0.152 0.082 Y NA
 3617547 3617548 Pmen_4285 Pmen_4286     TRUE 0.570 30.000 0.023 NA   NA
 3617548 3617549 Pmen_4286 Pmen_4287     TRUE 0.901 0.000 0.014 NA   NA
 3617549 3617550 Pmen_4287 Pmen_4288     TRUE 0.984 0.000 0.034 NA Y NA
 3617551 3617552 Pmen_4289 Pmen_4290     TRUE 0.995 13.000 0.381 0.002 Y NA
 3617552 3617553 Pmen_4290 Pmen_4291     TRUE 0.994 -3.000 0.250 1.000 Y NA
 3617553 3617554 Pmen_4291 Pmen_4292     TRUE 0.997 -3.000 0.500 1.000 Y NA
 3617554 3617555 Pmen_4292 Pmen_4293     TRUE 0.707 53.000 0.259 1.000 N NA
 3617555 3617556 Pmen_4293 Pmen_4294     TRUE 0.998 -3.000 0.375 0.074 Y NA
 3617556 3617557 Pmen_4294 Pmen_4295     FALSE 0.028 282.000 0.000 1.000 N NA
 3617557 3617558 Pmen_4295 Pmen_4296     TRUE 0.576 137.000 0.034 NA Y NA
 3617558 3617559 Pmen_4296 Pmen_4297     TRUE 0.999 -3.000 0.882 NA Y NA
 3617559 3617560 Pmen_4297 Pmen_4298     FALSE 0.068 177.000 0.000 NA   NA
 3617562 3617563 Pmen_4300 Pmen_4301     FALSE 0.347 98.000 0.082 NA   NA
 3617565 3617566 Pmen_4303 Pmen_4304     TRUE 0.994 4.000 0.313 NA Y NA
 3617566 3617567 Pmen_4304 Pmen_4305     FALSE 0.171 122.000 0.010 NA   NA
 3617568 3617569 Pmen_4306 Pmen_4307     FALSE 0.016 431.000 0.000 1.000   NA
 3617569 3617570 Pmen_4307 Pmen_4308     TRUE 0.623 100.000 0.294 1.000 N NA
 3617571 3617572 Pmen_4309 Pmen_4310     TRUE 0.985 3.000 0.000 0.021 Y NA
 3617572 3617573 Pmen_4310 Pmen_4311     TRUE 0.975 11.000 0.000 0.021 Y NA
 3617573 3617574 Pmen_4311 Pmen_4312     TRUE 0.988 0.000 0.000 0.010 Y NA
 3617574 3617575 Pmen_4312 Pmen_4313     TRUE 0.988 -3.000 0.000 0.010 Y NA
 3617575 3617576 Pmen_4313 Pmen_4314     TRUE 0.983 -7.000 0.000 0.016 Y NA
 3617576 3617577 Pmen_4314 Pmen_4315     TRUE 0.983 -7.000 0.000 0.016 Y NA
 3617578 3617579 Pmen_4316 Pmen_4317     TRUE 0.997 -3.000 0.583 0.001 N NA
 3617579 3617580 Pmen_4317 Pmen_4318     TRUE 0.611 256.000 0.479 0.002 N NA
 3617580 3617581 Pmen_4318 Pmen_4319     FALSE 0.045 223.000 0.000 1.000 N NA
 3617581 3617582 Pmen_4319 Pmen_4320   ssuB TRUE 0.863 33.000 0.161 0.073 N NA
 3617582 3617583 Pmen_4320 Pmen_4321 ssuB   TRUE 0.997 -3.000 0.472 1.000 Y NA
 3617583 3617584 Pmen_4321 Pmen_4322     FALSE 0.262 239.000 0.226 1.000 N NA
 3617584 3617585 Pmen_4322 Pmen_4323     TRUE 0.478 93.000 0.176 1.000 N NA
 3617585 3617586 Pmen_4323 Pmen_4324     TRUE 0.527 77.000 0.193 1.000   NA
 3617586 3617587 Pmen_4324 Pmen_4325     TRUE 0.878 10.000 0.028 1.000   NA
 3617591 3617592 Pmen_4329 Pmen_4330     TRUE 0.995 -3.000 0.273 1.000 Y NA
 3617592 3617593 Pmen_4330 Pmen_4331     TRUE 0.999 4.000 0.795 0.047 Y NA
 3617593 3617594 Pmen_4331 Pmen_4332     TRUE 0.490 78.000 0.049 0.061   NA
 3617595 3617596 Pmen_4333 Pmen_4334     TRUE 0.962 -3.000 0.115 1.000 N NA
 3617596 3617597 Pmen_4334 Pmen_4335     FALSE 0.121 104.000 0.000 1.000 N NA
 3617597 3617598 Pmen_4335 Pmen_4336     FALSE 0.175 204.000 0.086 NA   NA
 3617600 3617601 Pmen_4338 Pmen_4339     FALSE 0.059 198.000 0.000 1.000   NA
 3617601 3617602 Pmen_4339 Pmen_4340     TRUE 0.973 66.000 0.660 0.001 Y NA
 3617602 3617603 Pmen_4340 Pmen_4341     TRUE 0.998 0.000 0.308 0.000 Y NA
 3617604 3617605 Pmen_4342 Pmen_4343     TRUE 0.729 114.000 0.444 NA   NA
 3617606 3617607 Pmen_4344 Pmen_4345     TRUE 0.489 92.000 0.188 NA   NA
 3617607 3617608 Pmen_4345 Pmen_4346     TRUE 0.570 86.000 0.066 0.002 N NA
 3617608 3617609 Pmen_4346 Pmen_4347     TRUE 0.997 11.000 0.935 0.001 N NA
 3617609 3617610 Pmen_4347 Pmen_4348     TRUE 0.997 4.000 0.587 1.000 Y NA
 3617612 3617613 Pmen_4350 Pmen_4351     FALSE 0.072 172.000 0.000 NA   NA
 3617615 3617616 Pmen_4353 Pmen_4354     FALSE 0.284 57.000 0.023 NA   NA
 3617617 3617618 Pmen_4355 Pmen_4356     FALSE 0.124 129.000 0.000 1.000   NA
 3617618 3617619 Pmen_4356 Pmen_4357     FALSE 0.040 244.000 0.000 1.000   NA
 3617619 3617620 Pmen_4357 Pmen_4358     FALSE 0.039 250.000 0.000 1.000   NA
 3617620 3617621 Pmen_4358 Pmen_4359     FALSE 0.422 85.000 0.125 1.000 N NA
 3617621 3617622 Pmen_4359 Pmen_4360     TRUE 0.989 14.000 0.375 NA Y NA
 3617622 3617623 Pmen_4360 Pmen_4361     TRUE 0.968 73.000 1.000 NA Y NA
 3617623 3617624 Pmen_4361 Pmen_4362     FALSE 0.131 349.000 0.000 1.000 Y NA
 3617624 3617625 Pmen_4362 Pmen_4363     FALSE 0.020 339.000 0.000 1.000 N NA
 3617627 3617628 Pmen_4365 Pmen_4366     TRUE 0.941 83.000 0.667 1.000 Y NA
 3617628 3617629 Pmen_4366 Pmen_4367     FALSE 0.016 398.000 0.000 1.000 N NA
 3617629 3617630 Pmen_4367 Pmen_4368     FALSE 0.038 228.000 0.000 NA N NA
 3617630 3617631 Pmen_4368 Pmen_4369     TRUE 0.821 -3.000 0.000 NA N NA
 3617632 3617633 Pmen_4370 Pmen_4371     FALSE 0.066 184.000 0.000 1.000 N NA
 3617634 3617635 Pmen_4372 Pmen_4373   rpmG FALSE 0.029 279.000 0.000 1.000 N NA
 3617635 3617636 Pmen_4373 Pmen_4374 rpmG rpmB TRUE 0.995 11.000 0.332 0.008 Y NA
 3617639 3617640 Pmen_4377 Pmen_4378   dut TRUE 0.972 3.000 0.201 1.000 N NA
 3617640 3617641 Pmen_4378 Pmen_4379 dut   TRUE 0.539 38.000 0.039 1.000 N NA
 3617641 3617642 Pmen_4379 Pmen_4380     TRUE 0.704 25.000 0.044 1.000 N NA
 3617642 3617643 Pmen_4380 Pmen_4381     FALSE 0.055 211.000 0.000 1.000   NA
 3617644 3617645 Pmen_4382 Pmen_4383   pyrE TRUE 0.787 16.000 0.034 NA   NA
 3617647 3617648 Pmen_4385 Pmen_4386   rph TRUE 0.557 29.000 0.018 NA   NA
 3617649 3617650 Pmen_4387 Pmen_4388   gmk TRUE 0.704 55.000 0.276 NA   NA
 3617650 3617651 Pmen_4388 Pmen_4389 gmk rpoZ TRUE 0.756 95.000 0.471 1.000 N NA
 3617651 3617652 Pmen_4389 Pmen_4390 rpoZ   TRUE 0.868 64.000 0.291 1.000 Y NA
 3617652 3617653 Pmen_4390 Pmen_4391     TRUE 0.548 69.000 0.215 NA N NA
 3617653 3617654 Pmen_4391 Pmen_4392     FALSE 0.373 59.000 0.056 NA   NA
 3617655 3617656 Pmen_4393 Pmen_4394     FALSE 0.291 148.000 0.071 1.000 N NA
 3617656 3617657 Pmen_4394 Pmen_4395     TRUE 0.879 2.000 0.004 1.000 N NA
 3617658 3617659 Pmen_4396 Pmen_4397     TRUE 0.984 9.000 0.117 1.000 Y NA
 3617659 3617660 Pmen_4397 Pmen_4398     FALSE 0.253 92.000 0.038 NA N NA
 3617661 3617662 Pmen_4399 Pmen_4400     FALSE 0.131 68.000 0.000 NA   NA
 3617662 3617663 Pmen_4400 Pmen_4401     TRUE 0.479 174.000 0.290 NA   NA
 3617663 3617664 Pmen_4401 Pmen_4402     FALSE 0.377 188.000 0.229 1.000   NA
 3617664 3617665 Pmen_4402 Pmen_4403     TRUE 0.494 72.000 0.042 0.046   NA
 3617667 3617668 Pmen_4405 Pmen_4406     FALSE 0.047 212.000 0.000 NA   NA
 3617668 3617669 Pmen_4406 Pmen_4407     FALSE 0.307 63.000 0.037 NA   NA
 3617669 3617670 Pmen_4407 Pmen_4408     TRUE 0.979 37.000 0.453 0.077 Y NA
 3617670 3617671 Pmen_4408 Pmen_4409   ubiA FALSE 0.285 84.000 0.043 1.000 N NA
 3617671 3617672 Pmen_4409 Pmen_4410 ubiA   TRUE 0.803 105.000 0.248 NA Y NA
 3617672 3617673 Pmen_4410 Pmen_4411     FALSE 0.120 85.000 0.000 NA   NA
 3617673 3617674 Pmen_4411 Pmen_4412     TRUE 0.997 -3.000 0.585 0.002   NA
 3617674 3617675 Pmen_4412 Pmen_4413     FALSE 0.143 77.000 0.000 1.000   NA
 3617675 3617676 Pmen_4413 Pmen_4414     TRUE 0.978 -3.000 0.219 1.000   NA
 3617676 3617677 Pmen_4414 Pmen_4415   fliH TRUE 0.998 7.000 0.816 1.000 Y NA
 3617677 3617678 Pmen_4415 Pmen_4416 fliH   TRUE 0.999 2.000 0.789 0.005 Y NA
 3617678 3617679 Pmen_4416 Pmen_4417   fliF TRUE 0.999 -25.000 0.970 0.008 Y NA
 3617679 3617680 Pmen_4417 Pmen_4418 fliF   TRUE 0.998 21.000 1.000 0.008 Y NA
 3617680 3617681 Pmen_4418 Pmen_4419     TRUE 0.986 12.000 0.576 1.000 N NA
 3617682 3617683 Pmen_4420 Pmen_4421     TRUE 0.989 -3.000 0.123 NA Y NA
 3617683 3617684 Pmen_4421 Pmen_4422   fliP TRUE 0.998 0.000 0.368 0.081 Y NA
 3617684 3617685 Pmen_4422 Pmen_4423 fliP   TRUE 0.992 13.000 0.263 0.008 Y NA
 3617685 3617686 Pmen_4423 Pmen_4424     TRUE 0.994 4.000 0.281 1.000 Y NA
 3617686 3617687 Pmen_4424 Pmen_4425   flhB TRUE 0.999 -7.000 1.000 1.000 Y NA
 3617687 3617688 Pmen_4425 Pmen_4426 flhB   TRUE 0.999 4.000 0.667 0.008 Y NA
 3617689 3617690 Pmen_4427 Pmen_R0078     FALSE 0.017 361.000 0.000 NA   NA
 3617690 3617691 Pmen_R0078 Pmen_R0079     FALSE 0.096 151.000 0.000 NA   NA
 3617691 3617692 Pmen_R0079 Pmen_R0080     FALSE 0.033 252.000 0.000 NA   NA
 3617692 3617693 Pmen_R0080 Pmen_R0081     TRUE 0.481 23.000 0.000 NA   NA
 3617693 3617694 Pmen_R0081 Pmen_R0082     FALSE 0.120 85.000 0.000 NA   NA
 3617694 3617695 Pmen_R0082 Pmen_4428     FALSE 0.012 522.000 0.000 NA   NA
 3617695 3617696 Pmen_4428 Pmen_4429     TRUE 0.527 57.000 0.143 1.000 N NA
 3617697 3617698 Pmen_4430 Pmen_4431     FALSE 0.013 467.000 0.000 1.000 N NA
 3617698 3617699 Pmen_4431 Pmen_4432     TRUE 0.996 12.000 0.829 0.001   NA
 3617699 3617700 Pmen_4432 Pmen_4433     TRUE 0.985 3.000 0.144 0.001   NA
 3617700 3617701 Pmen_4433 Pmen_4434     FALSE 0.018 358.000 0.000 NA   NA
 3617701 3617702 Pmen_4434 Pmen_4435     FALSE 0.059 188.000 0.000 NA   NA
 3617702 3617703 Pmen_4435 Pmen_4436     FALSE 0.119 87.000 0.000 NA   NA
 3617703 3617704 Pmen_4436 Pmen_4437     FALSE 0.026 285.000 0.000 NA   NA
 3617704 3617705 Pmen_4437 Pmen_4438     TRUE 0.995 -3.000 0.647 NA   NA
 3617709 3617710 Pmen_4442 Pmen_4443     FALSE 0.117 125.000 0.000 1.000 N NA
 3617711 3617712 Pmen_4444 Pmen_4445     FALSE 0.031 275.000 0.000 1.000   NA
 3617712 3617713 Pmen_4445 Pmen_4446     FALSE 0.237 119.000 0.033 NA   NA
 3617714 3617715 Pmen_4447 Pmen_4448     TRUE 0.837 3.000 0.000 1.000   NA
 3617715 3617716 Pmen_4448 Pmen_4449     FALSE 0.129 71.000 0.000 NA   NA
 3617716 3617717 Pmen_4449 Pmen_4450     FALSE 0.118 94.000 0.000 NA   NA
 3617717 3617718 Pmen_4450 Pmen_4451     TRUE 0.985 -3.000 0.000 0.077 Y NA
 3617718 3617719 Pmen_4451 Pmen_4452     FALSE 0.103 125.000 0.000 NA N NA
 3617719 3617720 Pmen_4452 Pmen_4453     FALSE 0.192 81.000 0.015 NA N NA
 3617722 3617723 Pmen_4455 Pmen_4456     FALSE 0.338 64.000 0.051 NA   NA
 3617724 3617725 Pmen_4457 Pmen_4458     FALSE 0.227 59.000 0.009 NA   NA
 3617725 3617726 Pmen_4458 Pmen_4459     FALSE 0.043 222.000 0.000 NA   NA
 3617726 3617727 Pmen_4459 Pmen_4460     TRUE 0.852 -3.000 0.000 1.000   NA
 3617728 3617729 Pmen_4461 Pmen_4462     TRUE 0.970 -3.000 0.173 NA   NA
 3617729 3617730 Pmen_4462 Pmen_4463     FALSE 0.424 27.000 0.000 NA   NA
 3617732 3617733 Pmen_4465 Pmen_4466     FALSE 0.129 119.000 0.000 1.000   NA
 3617733 3617734 Pmen_4466 Pmen_4467     FALSE 0.125 92.000 0.000 1.000 N NA
 3617734 3617735 Pmen_4467 Pmen_4468     FALSE 0.132 316.000 0.182 1.000 N NA
 3617735 3617736 Pmen_4468 Pmen_4469     TRUE 0.704 139.000 0.028 0.046 Y NA
 3617736 3617737 Pmen_4469 Pmen_4470     TRUE 0.999 11.000 0.918 0.046 Y NA
 3617737 3617738 Pmen_4470 Pmen_4471     TRUE 0.988 13.000 0.173 0.046 Y NA
 3617738 3617739 Pmen_4471 Pmen_4472     TRUE 0.983 27.000 0.524 1.000 Y NA
 3617739 3617740 Pmen_4472 Pmen_4473     TRUE 0.987 4.000 0.118 1.000 Y NA
 3617740 3617741 Pmen_4473 Pmen_4474     TRUE 0.927 29.000 0.118 1.000 Y NA
 3617741 3617742 Pmen_4474 Pmen_4475     FALSE 0.070 180.000 0.000 1.000 N NA
 3617743 3617744 Pmen_4476 Pmen_4477     TRUE 0.967 2.000 0.162 NA   NA
 3617744 3617745 Pmen_4477 Pmen_4478     FALSE 0.037 338.000 0.019 NA   NA
 3617745 3617746 Pmen_4478 Pmen_4479     TRUE 0.975 17.000 0.354 0.051 N NA
 3617747 3617748 Pmen_4480 Pmen_4481     FALSE 0.113 82.000 0.000 NA N NA
 3617749 3617750 Pmen_4482 Pmen_4483     TRUE 0.997 9.000 0.364 0.001 Y NA
 3617750 3617751 Pmen_4483 Pmen_4484     FALSE 0.066 180.000 0.000 NA   NA
 3617751 3617752 Pmen_4484 Pmen_4485     TRUE 0.642 99.000 0.316 NA   NA
 3617753 3617754 Pmen_4486 Pmen_4487     FALSE 0.026 284.000 0.000 NA   NA
 3617754 3617755 Pmen_4487 Pmen_4488     TRUE 0.604 189.000 0.500 NA   NA
 3617755 3617756 Pmen_4488 Pmen_4489     TRUE 0.751 -24.000 0.000 NA   NA
 3617756 3617757 Pmen_4489 Pmen_4490     TRUE 0.692 12.000 0.000 NA   NA
 3617757 3617758 Pmen_4490 Pmen_4491     FALSE 0.334 90.000 0.000 0.035   NA
 3617758 3617759 Pmen_4491 Pmen_4492     TRUE 0.830 1.000 0.000 NA   NA
 3617760 3617761 Pmen_4493 Pmen_4494     FALSE 0.067 179.000 0.000 NA   NA
 3617761 3617762 Pmen_4494 Pmen_4495     FALSE 0.099 147.000 0.000 NA   NA
 3617763 3617764 Pmen_4496 Pmen_4497     TRUE 0.995 -3.000 0.309 1.000 Y NA
 3617764 3617765 Pmen_4497 Pmen_4498     TRUE 0.999 0.000 0.755 0.073 Y NA
 3617765 3617766 Pmen_4498 Pmen_4499     FALSE 0.161 60.000 0.000 1.000 N NA
 3617766 3617767 Pmen_4499 Pmen_4500     FALSE 0.121 102.000 0.000 1.000 N NA
 3617767 3617768 Pmen_4500 Pmen_4501     TRUE 0.842 -3.000 0.000 1.000 N NA
 3617768 3617769 Pmen_4501 Pmen_4502     FALSE 0.157 65.000 0.000 1.000   NA
 3617769 3617770 Pmen_4502 Pmen_4503     FALSE 0.261 173.000 0.094 1.000   NA
 3617770 3617771 Pmen_4503 Pmen_4504     TRUE 0.997 0.000 0.469 1.000 Y NA
 3617771 3617772 Pmen_4504 Pmen_4505     TRUE 0.970 58.000 0.867 NA Y NA
 3617773 3617774 Pmen_4506 Pmen_4507     TRUE 0.953 -7.000 0.132 NA   NA
 3617775 3617776 Pmen_4508 Pmen_4509     TRUE 0.997 -3.000 1.000 NA N NA
 3617776 3617777 Pmen_4509 Pmen_4510     TRUE 0.706 107.000 0.122 NA Y NA
 3617778 3617779 Pmen_4511 Pmen_4512     FALSE 0.156 59.000 0.000 NA   NA
 3617780 3617781 Pmen_4513 Pmen_4514 uvrD   TRUE 0.477 24.000 0.000 1.000 N NA
 3617781 3617782 Pmen_4514 Pmen_4515     TRUE 0.784 51.000 0.000 0.018 Y NA
 3617782 3617783 Pmen_4515 Pmen_4516     FALSE 0.114 146.000 0.000 1.000   NA
 3617783 3617784 Pmen_4516 Pmen_4517     FALSE 0.102 184.000 0.007 1.000   NA
 3617785 3617786 Pmen_4518 Pmen_4519     TRUE 0.838 0.000 0.000 NA   NA
 3617786 3617787 Pmen_4519 Pmen_4520     TRUE 0.817 3.000 0.000 NA   NA
 3617787 3617788 Pmen_4520 Pmen_4521     TRUE 0.826 2.000 0.000 NA   NA
 3617791 3617792 Pmen_4524 Pmen_4525     FALSE 0.342 74.000 0.066 1.000 N NA
 3617793 3617794 Pmen_4526 Pmen_4527     TRUE 0.834 -3.000 0.000 NA   NA
 3617798 3617799 Pmen_4531 Pmen_4532     TRUE 0.803 4.000 0.000 NA   NA
 3617799 3617800 Pmen_4532 Pmen_4533     FALSE 0.313 37.000 0.000 NA   NA
 3617802 3617803 Pmen_4535 Pmen_4536     TRUE 0.987 0.000 0.333 NA   NA
 3617803 3617804 Pmen_4536 Pmen_4537     TRUE 0.832 16.000 0.061 NA   NA
 3617805 3617806 Pmen_4538 Pmen_4539     TRUE 0.824 4.000 0.000 1.000   NA
 3617806 3617807 Pmen_4539 Pmen_4540     TRUE 0.878 -3.000 0.003 NA   NA
 3617807 3617808 Pmen_4540 Pmen_4541     TRUE 0.858 -7.000 0.010 NA   NA
 3617810 3617811 Pmen_4543 Pmen_4544     TRUE 0.985 -3.000 0.304 1.000 N NA
 3617811 3617812 Pmen_4544 Pmen_4545     FALSE 0.367 33.000 0.000 NA   NA
 3617815 3617816 Pmen_4548 Pmen_4549     FALSE 0.011 640.000 0.000 NA   NA
 3617816 3617817 Pmen_4549 Pmen_4550     TRUE 0.970 -15.000 0.250 NA   NA
 3617817 3617818 Pmen_4550 Pmen_4551     TRUE 0.834 -3.000 0.000 NA   NA
 3617818 3617819 Pmen_4551 Pmen_4552     FALSE 0.017 374.000 0.000 NA   NA
 3617820 3617821 Pmen_4553 Pmen_4554 cls   FALSE 0.129 119.000 0.000 1.000   NA
 3617822 3617823 Pmen_4555 Pmen_4556     TRUE 0.497 51.000 0.088 NA   NA
 3617823 3617824 Pmen_4556 Pmen_4557     FALSE 0.118 93.000 0.000 NA   NA
 3617824 3617825 Pmen_4557 Pmen_4558     FALSE 0.140 65.000 0.000 NA   NA
 3617825 3617826 Pmen_4558 Pmen_4559     TRUE 0.990 -3.000 0.433 NA   NA
 3617826 3617827 Pmen_4559 Pmen_4560     TRUE 0.477 273.000 0.588 NA   NA
 3617827 3617828 Pmen_4560 Pmen_4561     FALSE 0.014 478.000 0.000 1.000   NA
 3617828 3617829 Pmen_4561 Pmen_4562     TRUE 0.891 162.000 0.419 0.072 Y NA
 3617829 3617830 Pmen_4562 Pmen_4563     TRUE 0.758 10.000 0.000 1.000 N NA
 3617830 3617831 Pmen_4563 Pmen_4564     FALSE 0.126 86.000 0.000 1.000 N NA
 3617831 3617832 Pmen_4564 Pmen_4565     TRUE 0.999 -3.000 0.875 1.000 Y NA
 3617832 3617833 Pmen_4565 Pmen_4566     TRUE 0.996 0.000 0.368 1.000 Y NA
 3617833 3617834 Pmen_4566 Pmen_4567     TRUE 0.854 44.000 0.105 1.000 Y NA
 3617834 3617835 Pmen_4567 Pmen_4568     FALSE 0.013 429.000 0.000 NA N NA
 3617835 3617836 Pmen_4568 Pmen_4569     FALSE 0.042 215.000 0.000 NA N NA
 3617836 3617837 Pmen_4569 Pmen_4570     TRUE 0.990 -3.000 0.013 0.006 Y NA
 3617838 3617839 Pmen_4571 Pmen_4572   cobH TRUE 0.956 -7.000 0.149 1.000 N NA
 3617839 3617840 Pmen_4572 Pmen_4573 cobH   TRUE 0.996 0.000 0.191 0.006 Y NA
 3617840 3617841 Pmen_4573 Pmen_4574     TRUE 0.596 228.000 0.097 0.006 Y NA
 3617844 3617845 Pmen_4577 Pmen_4578     FALSE 0.336 84.000 0.000 0.043   NA
 3617846 3617847 Pmen_4579 Pmen_4580     FALSE 0.121 102.000 0.000 1.000 N NA
 3617847 3617848 Pmen_4580 Pmen_4581     FALSE 0.221 168.000 0.000 0.046 N NA
 3617848 3617849 Pmen_4581 Pmen_4582     TRUE 0.857 0.000 0.000 1.000   NA
 3617850 3617851 Pmen_4583 Pmen_4584     TRUE 0.974 -3.000 0.000 NA Y NA
 3617851 3617852 Pmen_4584 Pmen_4585     TRUE 0.922 90.000 0.568 NA Y NA
 3617852 3617853 Pmen_4585 Pmen_4586   cobN FALSE 0.301 275.000 0.070 1.000 Y NA
 3617853 3617854 Pmen_4586 Pmen_4587 cobN   TRUE 0.613 92.000 0.274 1.000   NA
 3617855 3617856 Pmen_4588 Pmen_4589     TRUE 0.970 -3.000 0.025 0.006   NA
 3617858 3617859 Pmen_4591 Pmen_4592     TRUE 0.992 -3.000 0.492 NA   NA
 3617860 3617861 Pmen_4593 Pmen_4594     TRUE 0.550 67.000 0.000 1.000 Y NA
 3617862 3617863 Pmen_4595 Pmen_4596     FALSE 0.010 593.000 0.000 NA N NA
 3617863 3617864 Pmen_4596 Pmen_4597     TRUE 0.992 12.000 0.833 NA N NA
 3617864 3617865 Pmen_4597 Pmen_4598     FALSE 0.100 132.000 0.000 NA N NA
 3617865 3617866 Pmen_4598 Pmen_4599     TRUE 0.750 11.000 0.000 1.000   NA
 3617867 3617868 Pmen_4600 Pmen_4601     TRUE 0.834 -3.000 0.000 NA   NA
 3617868 3617869 Pmen_4601 Pmen_4602     FALSE 0.045 223.000 0.000 1.000 N NA
 3617869 3617870 Pmen_4602 Pmen_4603     TRUE 0.981 11.000 0.412 1.000 N NA
 3617870 3617871 Pmen_4603 Pmen_4604     FALSE 0.263 74.000 0.031 1.000 N NA
 3617871 3617872 Pmen_4604 Pmen_4605     FALSE 0.225 57.000 0.002 1.000 N NA
 3617872 3617873 Pmen_4605 Pmen_4606   atpC FALSE 0.313 123.000 0.067 1.000 N NA
 3617873 3617874 Pmen_4606 Pmen_4607 atpC   TRUE 0.979 80.000 0.837 0.002 Y NA
 3617874 3617875 Pmen_4607 Pmen_4608     TRUE 0.986 48.000 0.724 0.002 Y NA
 3617875 3617876 Pmen_4608 Pmen_4609     TRUE 0.988 49.000 0.846 0.002 Y NA
 3617876 3617877 Pmen_4609 Pmen_4610     TRUE 0.998 16.000 0.864 0.002 Y NA
 3617877 3617878 Pmen_4610 Pmen_4611     TRUE 0.992 13.000 0.242 0.002 Y NA
 3617878 3617879 Pmen_4611 Pmen_4612     TRUE 0.916 86.000 0.666 0.002   NA
 3617879 3617880 Pmen_4612 Pmen_4613     TRUE 0.906 66.000 0.557 0.003   NA
 3617880 3617881 Pmen_4613 Pmen_4614     TRUE 0.984 25.000 0.291 0.003 Y NA
 3617881 3617882 Pmen_4614 Pmen_4615     FALSE 0.286 132.000 0.056 1.000 N NA
 3617882 3617883 Pmen_4615 Pmen_4616     TRUE 0.992 12.000 0.827 1.000 N NA
 3617883 3617884 Pmen_4616 Pmen_4617   gidB TRUE 0.972 12.000 0.339 1.000 N NA
 3617884 3617885 Pmen_4617 Pmen_4618 gidB   TRUE 0.992 0.000 0.466 1.000 N NA
 3617885 3617886 Pmen_4618 Pmen_4619   trmE FALSE 0.114 607.000 0.266 1.000   NA
 3617886 3617887 Pmen_4619 Pmen_4620 trmE   TRUE 0.607 158.000 0.221 0.050   NA
 3617887 3617888 Pmen_4620 Pmen_4621     TRUE 0.990 3.000 0.461 NA   NA
 3617888 3617889 Pmen_4621 Pmen_4622   rnpA TRUE 0.990 -7.000 0.540 NA   NA
 3617889 3617890 Pmen_4622 Pmen_4623 rnpA   TRUE 0.989 14.000 0.787 1.000   NA