MicrobesOnline Operon Predictions for Buchnera aphidicola str. Cc

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 2016605 2016606 BCc_002 BCc_003 gyrB dnaN TRUE 0.861 161.000 0.114 1.000 Y NA
 2016606 2016607 BCc_003 BCc_004 dnaN dnaA TRUE 0.998 6.000 0.328 1.000 Y NA
 2016608 2016609 BCc_005 BCc_006 rpmH rnpA TRUE 0.987 23.000 0.787 NA   NA
 2016609 2016610 BCc_006 BCc_007 rnpA yidC TRUE 0.725 408.000 0.105 1.000 N NA
 2016610 2016611 BCc_007 BCc_008 yidC thdF TRUE 0.764 75.000 0.221 0.064   NA
 2016612 2016613 BCc_010 BCc_011 groES groEL TRUE 0.970 55.000 0.631 0.024 Y NA
 2016613 2016614 BCc_011 BCc_012 groEL efp FALSE 0.229 139.000 0.003 1.000 N NA
 2016615 2016616 BCc_013 BCc_014 dnaC yhhF FALSE 0.316 205.000 0.000 1.000 Y NA
 2016617 2016618 BCc_015 BCc_016 ftsY rpoH TRUE 0.467 73.000 0.008 1.000 N NA
 2016618 2016619 BCc_016 BCc_017 rpoH metE FALSE 0.053 272.000 0.000 0.036 N NA
 2016620 2016621 BCc_018 BCc_019 rpoC rpoB TRUE 0.692 82.000 0.851 0.006   NA
 2016621 2016622 BCc_019 BCc_020 rpoB rplL TRUE 0.744 227.000 0.223 NA   NA
 2016622 2016623 BCc_020 BCc_021 rplL rplJ TRUE 0.970 52.000 0.884 NA Y NA
 2016623 2016624 BCc_021 BCc_022 rplJ rplA TRUE 0.898 172.000 0.302 1.000 Y NA
 2016624 2016625 BCc_022 BCc_023 rplA rplK TRUE 0.997 3.000 0.838 NA Y NA
 2016625 2016626 BCc_023 BCc_024 rplK nusG TRUE 0.958 51.000 0.681 NA N NA
 2016626 2016627 BCc_024 BCc_025 nusG secE TRUE 0.991 3.000 0.843 1.000   NA
 2016627 1396318 BCc_025 BCc_026 secE trnT FALSE 0.008 198.000 0.000 NA   NA
 1396318 1396319 BCc_026 BCc_027 trnT trnG FALSE 0.035 54.000 0.000 NA   NA
 1396319 1396320 BCc_027 BCc_028 trnG trnY FALSE 0.270 13.000 0.000 NA   NA
 1396320 1396321 BCc_028 BCc_029 trnY trnT FALSE 0.279 11.000 0.000 NA   NA
 2016628 2016629 BCc_030 BCc_031 metF argB FALSE 0.316 183.000 0.000 1.000 Y NA
 2016629 2016630 BCc_031 BCc_032 argB argG TRUE 0.990 29.000 0.029 1.000 Y NA
 2016630 2016631 BCc_032 BCc_033 argG argH TRUE 0.994 33.000 0.278 1.000 Y NA
 2016632 2016633 BCc_034 BCc_035 rpoD danG TRUE 0.796 165.000 0.299 1.000 N NA
 2016633 2016634 BCc_035 BCc_036 danG rpsU TRUE 0.734 72.000 0.067 NA N NA
 2016635 2016636 BCc_037 BCc_038 gcp cca FALSE 0.049 120.000 0.000 1.000 N NA
 2016636 2016637 BCc_038 BCc_039 cca lig FALSE 0.050 637.000 0.000 1.000 N NA
 1396332 1396333 BCc_040 BCc_041 trnK trnV FALSE 0.242 18.000 0.000 NA   NA
 2016638 2016639 BCc_042 BCc_043 gltX fliF FALSE 0.050 620.000 0.000 1.000 N NA
 2016639 2016640 BCc_043 BCc_044 fliF fliG TRUE 0.997 -3.000 0.220 0.015 Y NA
 2016640 2016641 BCc_044 BCc_045 fliG fliH TRUE 0.991 15.000 0.010 0.006 Y NA
 2016641 2016642 BCc_045 BCc_046 fliH fliI TRUE 0.997 6.000 1.000 1.000 Y NA
 2016642 2016643 BCc_046 BCc_047 fliI fliN FALSE 0.008 1422.000 0.000 1.000   NA
 2016643 2016644 BCc_047 BCc_048 fliN fliP FALSE 0.008 165.000 0.000 1.000   NA
 2016644 2016645 BCc_048 BCc_049 fliP fliQ TRUE 0.983 40.000 0.049 0.021 Y NA
 2016645 2016646 BCc_049 BCc_050 fliQ fliR TRUE 0.957 6.000 0.000 1.000 Y NA
 2016647 2016648 BCc_051 BCc_052 rpmG rpmB TRUE 0.993 12.000 0.332 NA   NA
 2016648 2016649 BCc_052 BCc_053 rpmB ppa FALSE 0.045 115.000 0.000 NA N NA
 2016649 1396346 BCc_053 BCc_054 ppa rnpB FALSE 0.008 1199.000 0.000 NA   NA
 1396346 2016650 BCc_054 BCc_055 rnpB yraL FALSE 0.151 33.000 0.000 NA   NA
 2016651 2016652 BCc_056 BCc_057 fabB talA TRUE 0.396 197.000 0.007 1.000 N NA
 2016652 2016653 BCc_057 BCc_058 talA tktB TRUE 0.986 47.000 0.739 1.000 Y NA
 2016653 2016654 BCc_058 BCc_059 tktB dapE TRUE 0.563 90.000 0.015 1.000 N NA
 2016655 2016656 BCc_060 BCc_061 dapA aroC FALSE 0.316 256.000 0.000 1.000 Y NA
 2016657 2016658 BCc_062 BCc_063 yfcN hisG FALSE 0.008 289.000 0.000 NA   NA
 2016658 2016659 BCc_063 BCc_064 hisG hisD TRUE 0.997 8.000 0.171 0.024 Y NA
 2016659 2016660 BCc_064 BCc_065 hisD hisC TRUE 0.993 36.000 0.294 0.024 Y NA
 2016660 2016661 BCc_065 BCc_066 hisC hisB TRUE 0.998 2.000 0.341 0.024 Y NA
 2016661 2016662 BCc_066 BCc_067 hisB hisH TRUE 0.997 1.000 0.128 0.024 Y NA
 2016662 2016663 BCc_067 BCc_068 hisH hisA TRUE 0.997 5.000 0.210 0.024 Y NA
 2016663 2016664 BCc_068 BCc_069 hisA hisF TRUE 0.998 -18.000 0.433 0.024 Y NA
 2016664 2016665 BCc_069 BCc_070 hisF hisI TRUE 0.998 -6.000 0.430 0.024 Y NA
 2016665 2016666 BCc_070 BCc_071 hisI gnsD TRUE 0.477 65.000 0.007 1.000 N NA
 2016666 2016667 BCc_071 BCc_072 gnsD metG FALSE 0.312 195.000 0.005 1.000 N NA
 2016668 1396366 BCc_073 BCc_074 mesJ trnV FALSE 0.180 26.000 0.000 NA   NA
 2016671 2016672 BCc_077 BCc_078 aroH thrS TRUE 0.531 141.000 0.011 1.000 N NA
 2016672 2016673 BCc_078 BCc_079 thrS infC TRUE 0.997 4.000 0.186 1.000 Y NA
 2016673 2016674 BCc_079 BCc_080 infC rpmI TRUE 0.938 62.000 0.652 NA Y NA
 2016674 2016675 BCc_080 BCc_081 rpmI rplT TRUE 0.984 44.000 0.928 NA Y NA
 2016675 2016676 BCc_081 BCc_082 rplT pheS TRUE 0.883 111.000 0.202 1.000 Y NA
 2016676 2016677 BCc_082 BCc_083 pheS pheT TRUE 0.997 16.000 0.574 0.006 Y NA
 2016677 2016678 BCc_083 BCc_084 pheT himA TRUE 0.994 7.000 0.208 1.000 N NA
 2016679 2016680 BCc_085 BCc_086 glyS glyQ TRUE 0.998 4.000 0.651 0.006 Y NA
 2016681 2016682 BCc_087 BCc_088 nfo rplY FALSE 0.313 119.000 0.005 1.000 N NA
 2016682 2016683 BCc_088 BCc_089 rplY ksgA FALSE 0.316 499.000 0.000 1.000 Y NA
 2016684 2016685 BCc_090 BCc_091 carB carA TRUE 0.998 -21.000 0.345 0.006 Y NA
 2016685 2016686 BCc_091 BCc_092 carA dapB TRUE 0.814 83.000 0.034 1.000 Y NA
 2016686 2016687 BCc_092 BCc_093 dapB ileS FALSE 0.050 151.000 0.000 1.000 N NA
 2016689 2016690 BCc_095 BCc_096 dnaJ dnaK TRUE 0.896 134.000 0.236 0.012 Y NA
 2016691 2016692 BCc_097 BCc_098 nuoA nuoB TRUE 0.904 125.000 0.377 0.018 Y NA
 2016692 2016693 BCc_098 BCc_099 nuoB nuoCD TRUE 0.896 171.000 0.691 0.018 Y NA
 2016693 2016694 BCc_099 BCc_100 nuoCD nuoE TRUE 0.995 32.000 0.407 0.018 Y NA
 2016694 2016695 BCc_100 BCc_101 nuoE nuoF TRUE 0.997 -3.000 0.186 0.018 Y NA
 2016695 2016696 BCc_101 BCc_102 nuoF nuoG TRUE 0.878 123.000 0.180 0.038 Y NA
 2016696 2016697 BCc_102 BCc_103 nuoG nuoH TRUE 0.996 27.000 0.664 0.038 Y NA
 2016697 2016698 BCc_103 BCc_104 nuoH nuoI TRUE 0.997 16.000 0.423 0.035 Y NA
 2016698 2016699 BCc_104 BCc_105 nuoI nuoJ TRUE 0.997 17.000 0.210 0.038 Y NA
 2016699 2016700 BCc_105 BCc_106 nuoJ nuoK TRUE 0.985 36.000 0.022 0.018 Y NA
 2016700 2016701 BCc_106 BCc_107 nuoK nuoL TRUE 0.997 -3.000 0.211 0.038 Y NA
 2016701 2016702 BCc_107 BCc_108 nuoL nuoM TRUE 0.895 306.000 0.713 0.012 Y NA
 2016702 2016703 BCc_108 BCc_109 nuoM nuoN TRUE 0.988 16.000 0.008 0.012 Y NA
 2016705 2016706 BCc_111 BCc_112 prfA hemK TRUE 0.996 23.000 0.229 1.000 Y NA
 2016706 2016707 BCc_112 BCc_113 hemK ychA TRUE 0.958 39.000 0.059 NA   NA
 2016707 2016708 BCc_113 BCc_114 ychA ackA FALSE 0.008 100.000 0.000 NA   NA
 2016708 2016709 BCc_114 BCc_115 ackA pta TRUE 0.844 91.000 0.073 1.000 Y NA
 2016710 2016711 BCc_116 BCc_117 gyrA ahpC FALSE 0.199 196.000 0.002 1.000 N NA
 2016713 1396412 BCc_119 BCc_120 grpE ssrA FALSE 0.008 169.000 0.000 NA   NA
 2016716 2016717 BCc_123 BCc_124 pth ychF TRUE 0.955 56.000 0.184 1.000 Y NA
 2016718 2016719 BCc_125 BCc_126 thrC thrB TRUE 0.997 -13.000 0.233 1.000 Y NA
 2016719 2016720 BCc_126 BCc_127 thrB thrA TRUE 0.996 20.000 0.133 1.000 Y NA
 2016720 2016721 BCc_127 BCc_128 thrA pcnB FALSE 0.050 402.000 0.000 1.000 N NA
 2016722 2016723 BCc_129 BCc_130 truA secA FALSE 0.050 337.000 0.000 1.000 N NA
 2016723 2016724 BCc_130 BCc_131 secA aceE FALSE 0.050 486.000 0.000 1.000 N NA
 2016724 2016725 BCc_131 BCc_132 aceE aceF TRUE 0.997 12.000 0.220 0.029 Y NA
 2016725 2016726 BCc_132 BCc_133 aceF lpdA TRUE 0.901 86.000 0.463 1.000 Y NA
 2016727 2016728 BCc_134 BCc_135 yadR ftsZ FALSE 0.136 189.000 0.002 NA   NA
 2016728 2016729 BCc_135 BCc_136 ftsZ ftsA TRUE 0.931 66.000 0.460 1.000 Y NA
 2016729 2016730 BCc_136 BCc_137 ftsA yabC FALSE 0.242 475.000 0.003 1.000 N NA
 2016730 2016731 BCc_137 BCc_138 yabC ilvH FALSE 0.284 149.000 0.004 1.000 N NA
 2016731 2016732 BCc_138 BCc_139 ilvH ilvI TRUE 0.998 10.000 0.371 0.006 Y NA
 2016732 2016733 BCc_139 BCc_140 ilvI dapD FALSE 0.316 159.000 0.000 1.000 Y NA
 2016733 2016734 BCc_140 BCc_141 dapD map TRUE 0.601 141.000 0.021 1.000 N NA
 2016735 2016736 BCc_142 BCc_143 rpsB tsf TRUE 0.956 57.000 0.748 1.000 Y NA
 2016736 2016737 BCc_143 BCc_144 tsf pyrH TRUE 0.797 98.000 0.416 1.000 N NA
 2016737 2016738 BCc_144 BCc_145 pyrH frr TRUE 0.933 55.000 0.626 NA N NA
 2016738 2016739 BCc_145 BCc_146 frr yaeT FALSE 0.008 173.000 0.000 NA   NA
 2016739 2016740 BCc_146 BCc_147 yaeT fabZ FALSE 0.010 70.000 0.000 NA   NA
 2016740 2016741 BCc_147 BCc_148 fabZ dnaE FALSE 0.250 128.000 0.003 NA N NA
 2016743 2016744 BCc_150 BCc_151 flhB flhA TRUE 0.998 10.000 0.287 0.020 Y NA
 1396445 1396446 BCc_153 BCc_154 rrs trnI FALSE 0.008 118.000 0.000 NA   NA
 1396446 1396447 BCc_154 BCc_155 trnI trnA FALSE 0.267 14.000 0.000 NA   NA
 1396447 2016746 BCc_155 BCc_156 trnA dnaQ FALSE 0.008 88.000 0.000 NA   NA
 2016746 1396449 BCc_156 BCc_157 dnaQ trnD FALSE 0.008 90.000 0.000 NA   NA
 1396449 2016747 BCc_157 BCc_158 trnD grpE1 FALSE 0.008 121.000 0.000 NA   NA
 2016747 2016748 BCc_158 BCc_159 grpE1 smpB TRUE 0.562 66.000 0.002 1.000 Y NA
 2016748 2016749 BCc_159 BCc_160 smpB tadA TRUE 0.780 46.000 0.004 1.000 N NA
 2016750 2016751 BCc_161 BCc_162 acpS era TRUE 0.947 -25.000 0.007 1.000   NA
 2016751 2016752 BCc_162 BCc_163 era rnc TRUE 0.991 6.000 0.127 0.057   NA
 2016752 2016753 BCc_163 BCc_164 rnc lepB FALSE 0.143 84.000 0.002 1.000   NA
 2016753 2016754 BCc_164 BCc_165 lepB lepA FALSE 0.212 21.000 0.000 1.000   NA
 2016755 2016756 BCc_166 BCc_167 trmU fabI FALSE 0.050 232.000 0.000 1.000 N NA
 2016756 2016757 BCc_167 BCc_168 fabI rnb TRUE 0.715 211.000 0.085 1.000 N NA
 2016757 2016758 BCc_168 BCc_169 rnb lipB FALSE 0.047 93.000 0.000 1.000 N NA
 2016758 2016759 BCc_169 BCc_170 lipB lipA TRUE 0.907 77.000 0.319 0.006 Y NA
 2016760 2016761 BCc_171 BCc_172 sppA yciA FALSE 0.046 177.000 0.000 NA N NA
 2016761 2016762 BCc_172 BCc_173 yciA yciC FALSE 0.008 102.000 0.000 NA   NA
 2016765 2016766 BCc_176 BCc_177 yfgB hisS FALSE 0.008 82.000 0.000 1.000   NA
 2016766 2016767 BCc_177 BCc_178 hisS glyA TRUE 0.336 113.000 0.006 1.000 N NA
 2016768 2016769 BCc_179 BCc_180 pgl mfd TRUE 0.349 60.000 0.002 1.000 N NA
 2016772 2016773 BCc_183 BCc_184 ybgI sucA FALSE 0.170 246.000 0.003 NA   NA
 2016773 2016774 BCc_184 BCc_185 sucA sucB TRUE 0.998 6.000 0.667 1.000 Y NA
 2016774 2016775 BCc_185 BCc_186 sucB gpmA FALSE 0.261 290.000 0.004 1.000 N NA
 2016775 2016776 BCc_186 BCc_187 gpmA pfkA TRUE 0.694 122.000 0.009 0.026 Y NA
 2016777 2016778 BCc_188 BCc_189 tpiA himD TRUE 0.442 109.000 0.008 1.000 N NA
 2016778 2016779 BCc_189 BCc_190 himD rpsA TRUE 0.964 49.000 0.292 1.000 N NA
 2016779 2016780 BCc_190 BCc_191 rpsA aroA TRUE 0.588 240.000 0.015 1.000 N NA
 2016780 2016781 BCc_191 BCc_192 aroA serC TRUE 0.852 67.000 0.033 1.000 Y NA
 2016781 2016782 BCc_192 BCc_193 serC serS TRUE 0.408 95.000 0.008 1.000 N NA
 2016783 2016784 BCc_194 BCc_195 trxB infA TRUE 0.987 15.000 0.028 1.000 N NA
 2016784 2016785 BCc_195 BCc_196 infA aspS TRUE 0.659 62.000 0.004 1.000 Y NA
 2016785 2016786 BCc_196 BCc_197 aspS yebC TRUE 0.601 105.000 0.039 NA   NA
 2016788 2016789 BCc_199 BCc_200 zwf htpX TRUE 0.567 140.000 0.014 1.000 N NA
 2016789 2016790 BCc_200 BCc_201 htpX yoaE FALSE 0.050 323.000 0.000 1.000 N NA
 2016790 2016791 BCc_201 BCc_202 yoaE yeaZ TRUE 0.954 0.000 0.004 1.000 N NA
 2016792 2016793 BCc_203 BCc_204 minE minD TRUE 0.998 6.000 0.618 NA Y NA
 2016793 2016794 BCc_204 BCc_205 minD minC TRUE 0.994 36.000 0.466 1.000 Y NA
 1396499 1396500 BCc_207 BCc_208 trnL trnC FALSE 0.162 32.000 0.000 NA   NA
 2016797 2016798 BCc_211 BCc_212 flgF flgH FALSE 0.311 269.000 0.000 NA Y NA
 2016798 2016799 BCc_212 BCc_213 flgH flgI TRUE 0.881 66.000 0.049 0.017 Y NA
 2016799 2016800 BCc_213 BCc_214 flgI rluC FALSE 0.050 155.000 0.000 1.000 N NA
 2016800 2016801 BCc_214 BCc_215 rluC rpmF TRUE 0.589 72.000 0.004 1.000 Y NA
 2016801 2016802 BCc_215 BCc_216 rpmF fabD TRUE 0.560 259.000 0.014 1.000 N NA
 2016802 2016803 BCc_216 BCc_217 fabD fabG TRUE 0.998 -3.000 0.432 0.028 Y NA
 2016803 2016804 BCc_217 BCc_218 fabG acpP TRUE 0.923 67.000 0.321 1.000 Y NA
 2016804 2016805 BCc_218 BCc_219 acpP holB FALSE 0.282 9.000 0.000 1.000   NA
 2016805 2016806 BCc_219 BCc_220 holB ycfH TRUE 0.957 43.000 0.110 NA   NA
 2016807 2016808 BCc_221 BCc_222 asnS yceA FALSE 0.008 137.000 0.000 NA   NA
 2016808 2016809 BCc_222 BCc_223 yceA valS TRUE 0.605 52.000 0.004 NA   NA
 2016810 2016811 BCc_224 BCc_225 argF yhaR TRUE 0.938 52.000 0.143 NA N NA
 2016812 2016813 BCc_226 BCc_227 deaD pnp FALSE 0.316 282.000 0.000 1.000 Y NA
 2016813 2016814 BCc_227 BCc_228 pnp rpsO TRUE 0.901 196.000 0.335 NA Y NA
 2016814 2016815 BCc_228 BCc_229 rpsO truB TRUE 0.932 62.000 0.211 NA Y NA
 2016815 2016816 BCc_229 BCc_230 truB rbfA TRUE 0.984 49.000 0.318 1.000 Y NA
 2016816 2016817 BCc_230 BCc_231 rbfA infB TRUE 0.908 78.000 0.530 1.000 Y NA
 2016817 2016818 BCc_231 BCc_232 infB nusA TRUE 0.805 240.000 0.342 1.000 N NA
 2016818 1396525 BCc_232 BCc_233 nusA trnL FALSE 0.008 286.000 0.000 NA   NA
 1396525 2016819 BCc_233 BCc_234 trnL secG FALSE 0.008 152.000 0.000 NA   NA
 2016819 2016820 BCc_234 BCc_235 secG hflB FALSE 0.008 434.000 0.000 0.058   NA
 2016820 2016821 BCc_235 BCc_236 hflB ftsJ TRUE 0.911 55.000 0.152 NA N NA
 2016821 2016822 BCc_236 BCc_237 ftsJ greA TRUE 0.474 271.000 0.009 NA N NA
 2016823 2016824 BCc_238 BCc_239 yrbA rplU FALSE 0.046 337.000 0.000 NA N NA
 2016824 2016825 BCc_239 BCc_240 rplU rpmA TRUE 0.990 39.000 0.667 NA Y NA
 2016825 2016826 BCc_240 BCc_241 rpmA yhbZ TRUE 0.969 45.000 0.335 NA   NA
 2016827 2016828 BCc_242 BCc_243 rpsI rplM TRUE 0.995 33.000 0.601 NA Y NA
 2016829 2016830 BCc_244 BCc_245 pheA ffh FALSE 0.048 85.000 0.000 1.000 N NA
 2016830 2016831 BCc_245 BCc_246 ffh rpsP TRUE 0.935 55.000 0.361 NA N NA
 2016831 2016832 BCc_246 BCc_247 rpsP rimM TRUE 0.997 18.000 0.342 NA Y NA
 2016832 2016833 BCc_247 BCc_248 rimM trmD TRUE 0.997 12.000 0.672 1.000 Y NA
 2016833 2016834 BCc_248 BCc_249 trmD rplS TRUE 0.917 71.000 0.567 NA Y NA
 2016836 2016837 BCc_252 BCc_253 fis rluD FALSE 0.228 82.000 0.003 1.000 N NA
 2016838 2016839 BCc_254 BCc_255 alaS csrA TRUE 0.590 110.000 0.020 1.000 N NA
 2016839 1396548 BCc_255 BCc_256 csrA trnS FALSE 0.008 198.000 0.000 NA   NA
 1396548 1396549 BCc_256 BCc_257 trnS trnR FALSE 0.212 21.000 0.000 NA   NA
 2016840 2016841 BCc_258 BCc_259 zapA rpiA FALSE 0.083 43.000 0.000 NA   NA
 2016841 1396552 BCc_259 BCc_260 rpiA trnQ FALSE 0.017 60.000 0.000 NA   NA
 1396552 1396553 BCc_260 BCc_261 trnQ trnL FALSE 0.035 54.000 0.000 NA   NA
 1396553 1396554 BCc_261 BCc_262 trnL trnM FALSE 0.255 16.000 0.000 NA   NA
 2016842 2016843 BCc_263 BCc_264 glnS eno FALSE 0.049 82.000 0.000 1.000 N NA
 2016843 2016844 BCc_264 BCc_265 eno polA FALSE 0.048 106.000 0.000 1.000 N NA
 2016848 2016849 BCc_269 BCc_270 prfB lysS TRUE 0.997 3.000 0.162 1.000 Y NA
 2016849 2016850 BCc_270 BCc_271 lysS lysA TRUE 0.373 106.000 0.007 1.000 N NA
 2016850 2016851 BCc_271 BCc_272 lysA miaB FALSE 0.047 103.000 0.000 1.000 N NA
 2016851 2016852 BCc_272 BCc_273 miaB ybeY TRUE 0.897 34.000 0.007 NA   NA
 2016852 2016853 BCc_273 BCc_274 ybeY leuS FALSE 0.035 54.000 0.000 NA   NA
 2016853 2016854 BCc_274 BCc_275 leuS holA TRUE 0.917 45.000 0.012 1.000 N NA
 2016854 2016855 BCc_275 BCc_276 holA yhhP FALSE 0.132 56.000 0.000 1.000 N NA
 2016857 2016858 BCc_278 BCc_279 pgk fba TRUE 0.927 58.000 0.056 0.024 Y NA
 2016858 2016859 BCc_279 BCc_280 fba yggB TRUE 0.666 197.000 0.038 1.000 N NA
 2016859 2016860 BCc_280 BCc_281 yggB recC TRUE 0.570 90.000 0.015 1.000 N NA
 2016860 2016861 BCc_281 BCc_282 recC recB TRUE 0.997 16.000 0.542 0.008 Y NA
 2016861 2016862 BCc_282 BCc_283 recB recD TRUE 0.998 2.000 0.688 0.008 Y NA
 2016863 1396578 BCc_285 BCc_286 nusB yccK FALSE 0.011 69.000 0.000 NA   NA
 2016864 2016865 BCc_287 BCc_288 cyoE cyoD TRUE 0.989 -27.000 0.047 0.056 N NA
 2016865 2016866 BCc_288 BCc_289 cyoD cyoC TRUE 0.990 38.000 0.167 0.032 Y NA
 2016866 2016867 BCc_289 BCc_290 cyoC cyoB TRUE 0.985 48.000 0.697 0.032 Y NA
 2016867 2016868 BCc_290 BCc_291 cyoB cyoA TRUE 0.939 58.000 0.122 0.005 Y NA
 2016869 2016870 BCc_292 BCc_293 bolA clpP FALSE 0.046 208.000 0.000 NA N NA
 2016870 2016871 BCc_293 BCc_294 clpP clpX TRUE 0.978 53.000 0.352 1.000 Y NA
 2016871 2016872 BCc_294 BCc_295 clpX lon TRUE 0.881 108.000 0.201 1.000 Y NA
 2016872 1396588 BCc_295 BCc_296 lon ppiD FALSE 0.008 125.000 0.000 NA   NA
 1396588 2016873 BCc_296 BCc_297 ppiD mdlA FALSE 0.008 102.000 0.000 NA   NA
 2016873 2016874 BCc_297 BCc_298 mdlA mdlB TRUE 0.993 32.000 0.911 0.005 Y NA
 2016875 2016876 BCc_300 BCc_301 dnaX ybaB TRUE 0.760 104.000 0.411 NA   NA
 2016876 2016877 BCc_301 BCc_302 ybaB htpG FALSE 0.288 108.000 0.007 NA   NA
 2016877 2016878 BCc_302 BCc_303 htpG adk TRUE 0.667 79.000 0.035 1.000 N NA
 2016882 1396601 BCc_308 BCc_309 cspE rrf FALSE 0.008 201.000 0.000 NA   NA
 1396601 1396602 BCc_309 BCc_310 rrf rrl FALSE 0.103 38.000 0.000 NA   NA
 1396602 1396603 BCc_310 BCc_311 rrl trnE FALSE 0.008 134.000 0.000 NA   NA
 1396603 2016883 BCc_311 BCc_312 trnE aroE FALSE 0.008 137.000 0.000 NA   NA
 2016884 2016885 BCc_313 BCc_314 def fmt TRUE 0.989 36.000 0.058 1.000 Y NA
 2016886 2016887 BCc_315 BCc_316 rplQ rpoA TRUE 0.985 28.000 0.873 1.000 N NA
 2016887 2016888 BCc_316 BCc_317 rpoA rpsD TRUE 0.987 34.000 0.549 1.000 N NA
 2016888 2016889 BCc_317 BCc_318 rpsD rpsK TRUE 0.994 34.000 0.509 1.000 Y NA
 2016889 2016890 BCc_318 BCc_319 rpsK rpsM TRUE 0.996 19.000 0.810 0.099 Y NA
 2016890 2016891 BCc_319 BCc_320 rpsM rpmJ TRUE 0.713 100.000 0.194 0.099   NA
 2016891 2016892 BCc_320 BCc_321 rpmJ secY TRUE 0.971 36.000 0.089 1.000   NA
 2016892 2016893 BCc_321 BCc_322 secY rplO TRUE 0.962 49.000 0.730 1.000 N NA
 2016893 2016894 BCc_322 BCc_323 rplO rpmD TRUE 0.998 12.000 0.653 0.018 Y NA
 2016894 2016895 BCc_323 BCc_324 rpmD rpsE TRUE 0.995 25.000 0.789 1.000 Y NA
 2016895 2016896 BCc_324 BCc_325 rpsE rplR TRUE 0.996 19.000 0.814 1.000 Y NA
 2016896 2016897 BCc_325 BCc_326 rplR rplF TRUE 0.997 2.000 0.815 0.099 Y NA
 2016897 2016898 BCc_326 BCc_327 rplF rpsH TRUE 0.990 38.000 0.808 0.099 Y NA
 2016898 2016899 BCc_327 BCc_328 rpsH rpsN TRUE 0.976 54.000 0.473 0.099 Y NA
 2016899 2016900 BCc_328 BCc_329 rpsN rplE TRUE 0.997 19.000 0.496 0.099 Y NA
 2016900 2016901 BCc_329 BCc_330 rplE rplX TRUE 0.997 19.000 0.758 0.099 Y NA
 2016901 2016902 BCc_330 BCc_331 rplX rplN TRUE 0.995 22.000 0.810 1.000 Y NA
 2016902 2016903 BCc_331 BCc_332 rplN rpsQ TRUE 0.884 139.000 0.791 1.000 Y NA
 2016903 2016904 BCc_332 BCc_333 rpsQ rpmC TRUE 0.991 -3.000 0.828 0.099   NA
 2016904 2016905 BCc_333 BCc_334 rpmC rplP TRUE 0.992 3.000 0.802 0.099   NA
 2016905 2016906 BCc_334 BCc_335 rplP rpsC TRUE 0.995 22.000 0.828 1.000 Y NA
 2016906 2016907 BCc_335 BCc_336 rpsC rplV TRUE 0.997 -22.000 0.719 1.000 Y NA
 2016907 2016908 BCc_336 BCc_337 rplV rpsS TRUE 0.997 18.000 0.769 1.000 Y NA
 2016908 2016909 BCc_337 BCc_338 rpsS rplB TRUE 0.996 20.000 0.820 1.000 Y NA
 2016909 2016910 BCc_338 BCc_339 rplB rplW TRUE 0.995 20.000 0.849 1.000 Y NA
 2016910 2016911 BCc_339 BCc_340 rplW rplD TRUE 0.998 -3.000 0.513 1.000 Y NA
 2016911 2016912 BCc_340 BCc_341 rplD rplC TRUE 0.997 21.000 0.486 0.099 Y NA
 2016912 2016913 BCc_341 BCc_342 rplC rpsJ TRUE 0.982 51.000 0.307 1.000 Y NA
 2016913 2016914 BCc_342 BCc_343 rpsJ tuf FALSE 0.316 168.000 0.000 1.000 Y NA
 2016914 2016915 BCc_343 BCc_344 tuf fusA TRUE 0.815 64.000 0.011 0.005 Y NA
 2016915 2016916 BCc_344 BCc_345 fusA rpsG TRUE 0.905 79.000 0.579 1.000 Y NA
 2016916 2016917 BCc_345 BCc_346 rpsG rpsL TRUE 0.997 21.000 0.620 0.021 Y NA
 2016917 2016918 BCc_346 BCc_347 rpsL yheL TRUE 0.691 87.000 0.058 NA N NA
 2016918 2016919 BCc_347 BCc_348 yheL yheM TRUE 0.997 13.000 0.804 NA Y NA
 2016919 2016920 BCc_348 BCc_349 yheM yheN TRUE 0.995 23.000 0.790 NA Y NA
 2016920 2016921 BCc_349 BCc_350 yheN trpS FALSE 0.046 291.000 0.000 NA N NA
 2016921 2016922 BCc_350 BCc_351 trpS rpe TRUE 0.843 55.000 0.022 1.000 N NA
 2016922 2016923 BCc_351 BCc_352 rpe aroB FALSE 0.251 109.000 0.003 1.000 N NA
 2016923 2016924 BCc_352 BCc_353 aroB aroK TRUE 0.481 60.000 0.000 1.000 Y NA
 2016928 2016929 BCc_358 BCc_359 dusA dnaB FALSE 0.050 287.000 0.000 1.000 N NA
 2016929 2016930 BCc_359 BCc_360 dnaB yqgF FALSE 0.320 357.000 0.000 0.052 Y NA
 2016930 2016931 BCc_360 BCc_361 yqgF yggW FALSE 0.077 64.000 0.000 1.000 N NA
 2016931 2016932 BCc_361 BCc_362 yggW mutY FALSE 0.050 198.000 0.000 1.000 N NA
 2016932 2016933 BCc_362 BCc_363 mutY yggX TRUE 0.992 -16.000 0.150 NA N NA
 2016934 1396657 BCc_364 BCc_365 sbcB trnN FALSE 0.010 71.000 0.000 NA   NA
 2016935 2016936 BCc_367 BCc_368 dut rplI TRUE 0.498 34.000 0.000 1.000 N NA
 2016936 2016937 BCc_368 BCc_369 rplI rpsR TRUE 0.958 58.000 0.499 0.098 Y NA
 2016937 2016938 BCc_369 BCc_370 rpsR rpsF TRUE 0.952 59.000 0.319 0.098 Y NA
 2016938 2016939 BCc_370 BCc_371 rpsF miaA FALSE 0.316 202.000 0.000 1.000 Y NA
 2016939 2016940 BCc_371 BCc_372 miaA pgi FALSE 0.050 160.000 0.000 1.000 N NA
 2016941 1396666 BCc_373 BCc_374 orn trnG FALSE 0.008 94.000 0.000 NA   NA
 2016943 2016944 BCc_376 BCc_377 hslV hlsU TRUE 0.997 14.000 0.752 1.000 Y NA
 2016944 2016945 BCc_377 BCc_378 hlsU fpr FALSE 0.050 655.000 0.000 1.000 N NA
 2016946 2016947 BCc_379 BCc_380 yba3 dapF FALSE 0.008 539.000 0.000 NA   NA
 1396674 1396675 BCc_382 BCc_383 trnP trnH FALSE 0.015 61.000 0.000 NA   NA
 1396675 1396676 BCc_383 BCc_384 trnH trnR FALSE 0.103 38.000 0.000 NA   NA
 1396676 2016949 BCc_384 BCc_385 trnR rho FALSE 0.008 216.000 0.000 NA   NA
 2016949 2016950 BCc_385 BCc_386 rho trxA TRUE 0.670 232.000 0.087 1.000   NA
 2016950 2016951 BCc_386 BCc_387 trxA rep FALSE 0.280 141.000 0.006 1.000   NA
 2016951 2016952 BCc_387 BCc_388 rep ilvC TRUE 0.326 117.000 0.005 1.000 N NA
 2016952 2016953 BCc_388 BCc_389 ilvC ilvD TRUE 0.968 48.000 0.022 0.010 Y NA
 2016953 1396682 BCc_389 BCc_390 ilvD trnW FALSE 0.008 197.000 0.000 NA   NA
 2016954 2016955 BCc_391 BCc_392 iscS iscU TRUE 0.992 23.000 0.448 1.000 N NA
 2016955 2016956 BCc_392 BCc_393 iscU hscB TRUE 0.516 165.000 0.010 1.000 N NA
 2016956 2016957 BCc_393 BCc_394 hscB hscA TRUE 0.998 8.000 0.634 NA Y NA
 2016957 2016958 BCc_394 BCc_395 hscA fdx TRUE 0.754 102.000 0.794 NA N NA
 2016959 2016960 BCc_396 BCc_397 engA yfgM TRUE 0.971 6.000 0.009 NA   NA