MicrobesOnline Operon Predictions for Streptococcus pyogenes MGAS6180

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column	Description
Gene1	VIMSS id of 1st gene in pair
SysName1	Systematic name of 1st gene in pair
Name1	Ordinary name of 1st gene in pair
Gene2	VIMSS id of 2nd gene in pair
SysName2	Systematic name of 2nd gene in pair
Name2	Ordinary name of 2nd gene in pair
bOp	Whether the pair is predicted to lie in the same operon or not
pOp	Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep	Distance between the two genes, in base pairs
MOGScore	Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore	Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim	Whether the genes share a COG category or not
ExprSim	Correlation of expression patterns (not available for most genomes)

Gene1	Gene2	SysName1	SysName2	Name1	Name2	bOp	pOp	Sep	MOGScore	GOScore	COGSim	ExprSim
924176	924177	M28_Spy0001	M28_Spy0002	dnaA	dnaN	TRUE	0.728	155.000	0.328	1.000	Y	NA
924177	924178	M28_Spy0002	M28_Spy0003	dnaN		FALSE	0.318	75.000	0.009	NA		NA
924178	924179	M28_Spy0003	M28_Spy0004			FALSE	0.077	330.000	0.064	NA		NA
924179	924180	M28_Spy0004	M28_Spy0005		pth	TRUE	0.963	25.000	0.184	1.000	Y	NA
924180	924181	M28_Spy0005	M28_Spy0006	pth	trcF	TRUE	0.941	3.000	0.137	1.000	N	NA
924181	924182	M28_Spy0006	M28_Spy0007	trcF		FALSE	0.178	162.000	0.024	1.000	N	NA
924182	924183	M28_Spy0007	M28_Spy0008		divIC	TRUE	0.889	-13.000	0.053	1.000	N	NA
924183	924184	M28_Spy0008	M28_Spy0009	divIC		TRUE	0.913	-3.000	0.011	NA		NA
924184	924185	M28_Spy0009	M28_Spy0010			TRUE	0.931	13.000	0.132	NA		NA
924185	924186	M28_Spy0010	M28_Spy0011		tilS	TRUE	0.902	-3.000	0.014	1.000	N	NA
924186	924187	M28_Spy0011	M28_Spy0012	tilS	hpt	TRUE	0.972	5.000	0.067	0.064	N	NA
924187	924188	M28_Spy0012	M28_Spy0013	hpt	ftsH	TRUE	0.897	22.000	0.192	1.000	N	NA
924188	924189	M28_Spy0013	M28_Spy0014	ftsH		FALSE	0.072	258.000	0.009	1.000	N	NA
924191	924192	M28_SpyR0001	M28_SpyT0001			TRUE	0.640	-246.000	0.000	NA		NA
924192	924193	M28_SpyT0001	M28_SpyR0002			FALSE	0.034	296.000	0.000	NA		NA
924193	924194	M28_SpyR0002	M28_SpyR0003			FALSE	0.158	85.000	0.000	NA		NA
924194	924195	M28_SpyR0003	M28_SpyT0002			TRUE	0.755	18.000	0.000	NA		NA
924195	924196	M28_SpyT0002	M28_SpyT0003			TRUE	0.755	18.000	0.000	NA		NA
924196	924197	M28_SpyT0003	M28_SpyT0004			TRUE	0.567	32.000	0.000	NA		NA
924197	924198	M28_SpyT0004	M28_SpyT0005			TRUE	0.837	6.000	0.000	NA		NA
924198	924199	M28_SpyT0005	M28_SpyT0006			TRUE	0.821	11.000	0.000	NA		NA
924199	924200	M28_SpyT0006	M28_SpyT0007			TRUE	0.801	13.000	0.000	NA		NA
924200	924201	M28_SpyT0007	M28_SpyT0008			TRUE	0.831	9.000	0.000	NA		NA
924201	924202	M28_SpyT0008	M28_SpyT0009			TRUE	0.765	17.000	0.000	NA		NA
924202	924203	M28_SpyT0009	M28_SpyT0010			TRUE	0.842	4.000	0.000	NA		NA
924203	924204	M28_SpyT0010	M28_SpyR0004			FALSE	0.118	144.000	0.000	NA		NA
924204	924205	M28_SpyR0004	M28_SpyT0011			TRUE	0.640	-246.000	0.000	NA		NA
924205	924206	M28_SpyT0011	M28_SpyR0005			FALSE	0.034	296.000	0.000	NA		NA
924206	924207	M28_SpyR0005	M28_SpyR0006			FALSE	0.158	85.000	0.000	NA		NA
924207	924208	M28_SpyR0006	M28_SpyT0012			TRUE	0.755	18.000	0.000	NA		NA
924208	924209	M28_SpyT0012	M28_SpyT0013			TRUE	0.755	18.000	0.000	NA		NA
924209	924210	M28_SpyT0013	M28_SpyT0014			TRUE	0.567	32.000	0.000	NA		NA
924210	924211	M28_SpyT0014	M28_SpyT0015			TRUE	0.837	6.000	0.000	NA		NA
924211	924212	M28_SpyT0015	M28_SpyT0016			TRUE	0.821	11.000	0.000	NA		NA
924212	924213	M28_SpyT0016	M28_SpyT0017			TRUE	0.801	13.000	0.000	NA		NA
924213	924214	M28_SpyT0017	M28_SpyT0018			TRUE	0.831	9.000	0.000	NA		NA
924214	924215	M28_SpyT0018	M28_SpyT0019			TRUE	0.765	17.000	0.000	NA		NA
924215	924216	M28_SpyT0019	M28_SpyT0020			TRUE	0.842	4.000	0.000	NA		NA
924216	924217	M28_SpyT0020	M28_SpyT0021			TRUE	0.837	6.000	0.000	NA		NA
924217	924218	M28_SpyT0021	M28_SpyT0022			TRUE	0.709	21.000	0.000	NA		NA
924218	924219	M28_SpyT0022	M28_SpyT0024			FALSE	0.124	122.000	0.000	NA		NA
924219	924220	M28_SpyT0024	M28_SpyT0025			TRUE	0.709	21.000	0.000	NA		NA
924220	924221	M28_SpyT0025	M28_SpyT0026			TRUE	0.801	13.000	0.000	NA		NA
924221	924222	M28_SpyT0026	M28_SpyT0027			TRUE	0.535	35.000	0.000	NA		NA
924222	924223	M28_SpyT0027	M28_SpyT0028			TRUE	0.827	10.000	0.000	NA		NA
924223	924224	M28_SpyT0028	M28_Spy0017		sibA	FALSE	0.014	1180.000	0.000	NA		NA
924224	924225	M28_Spy0017	M28_Spy0018	sibA	prsA	FALSE	0.153	241.000	0.107	NA		NA
924225	924226	M28_Spy0018	M28_Spy0019	prsA	recO	FALSE	0.062	186.000	0.000	1.000	N	NA
924226	924227	M28_Spy0019	M28_Spy0020	recO	plsX	FALSE	0.208	103.000	0.011	1.000	N	NA
924227	924228	M28_Spy0020	M28_Spy0021	plsX	acpP.1	TRUE	0.992	-7.000	0.017	0.009	Y	NA
924228	924229	M28_Spy0021	M28_Spy0022	acpP.1	purC	FALSE	0.205	121.000	0.017	1.000	N	NA
924229	924230	M28_Spy0022	M28_Spy0023	purC	purL	TRUE	0.684	76.000	0.043	1.000	Y	NA
924230	924231	M28_Spy0023	M28_Spy0024	purL	purF	TRUE	0.578	104.000	0.024	1.000	Y	NA
924231	924232	M28_Spy0024	M28_Spy0025	purF	purM	TRUE	0.966	28.000	0.248	1.000	Y	NA
924232	924233	M28_Spy0025	M28_Spy0026	purM	purN	TRUE	0.868	168.000	0.238	0.003	Y	NA
924233	924234	M28_Spy0026	M28_Spy0027	purN	purH	TRUE	0.611	184.000	0.225	1.000	Y	NA
924236	924237	M28_Spy0029	M28_Spy0030	purD	purE	TRUE	0.519	158.000	0.044	1.000	Y	NA
924237	924238	M28_Spy0030	M28_Spy0031	purE	purK	TRUE	0.984	-49.000	0.002	0.002	Y	NA
924238	924239	M28_Spy0031	M28_Spy0032	purK		TRUE	0.713	-31.000	0.000	NA		NA
924239	924240	M28_Spy0032	M28_Spy0033		purB	TRUE	0.727	20.000	0.000	NA		NA
924240	924241	M28_Spy0033	M28_Spy0034	purB		FALSE	0.207	131.000	0.005	1.000		NA
924241	924242	M28_Spy0034	M28_Spy0035		ruvB	FALSE	0.174	154.000	0.002	1.000		NA
924242	924243	M28_Spy0035	M28_Spy0036	ruvB		FALSE	0.170	138.000	0.005	1.000	N	NA
924243	924244	M28_Spy0036	M28_Spy0037			TRUE	0.827	23.000	0.019	NA		NA
924244	924245	M28_Spy0037	M28_Spy0038			TRUE	0.977	-3.000	0.351	NA		NA
924245	924246	M28_Spy0038	M28_Spy0039			FALSE	0.023	309.000	0.000	1.000	N	NA
924246	924247	M28_Spy0039	M28_Spy0040		adhA	FALSE	0.375	252.000	0.012	0.002		NA
924247	924248	M28_Spy0040	M28_Spy0041	adhA		FALSE	0.024	388.000	0.000	1.000		NA
924248	924249	M28_Spy0041	M28_Spy0042		rpsJ	FALSE	0.056	199.000	0.000	1.000	N	NA
924249	924250	M28_Spy0042	M28_Spy0043	rpsJ	rplC	TRUE	0.799	248.000	0.467	0.043	Y	NA
924250	924251	M28_Spy0043	M28_Spy0044	rplC	rplD	TRUE	0.995	24.000	0.544	0.033	Y	NA
924251	924252	M28_Spy0044	M28_Spy0045	rplD	rplW	TRUE	0.997	0.000	0.307	0.033	Y	NA
924252	924253	M28_Spy0045	M28_Spy0046	rplW	rplB	TRUE	0.998	18.000	0.849	0.037	Y	NA
924253	924254	M28_Spy0046	M28_Spy0047	rplB	rpsS	TRUE	0.958	140.000	0.820	0.043	Y	NA
924254	924255	M28_Spy0047	M28_Spy0048	rpsS	rplV	TRUE	0.998	16.000	0.769	0.043	Y	NA
924255	924256	M28_Spy0048	M28_Spy0049	rplV	rpsC	TRUE	0.998	13.000	0.719	0.043	Y	NA
924256	924257	M28_Spy0049	M28_Spy0050	rpsC	rplP	TRUE	0.999	4.000	0.828	0.043	Y	NA
924257	924258	M28_Spy0050	M28_Spy0051	rplP	rpmC	TRUE	0.999	10.000	0.802	0.033	Y	NA
924258	924259	M28_Spy0051	M28_Spy0052	rpmC	rpsQ	TRUE	0.997	26.000	0.828	0.033	Y	NA
924259	924260	M28_Spy0052	M28_Spy0053	rpsQ	rplN	TRUE	0.996	25.000	0.791	0.043	Y	NA
924260	924261	M28_Spy0053	M28_Spy0054	rplN	rplX	TRUE	0.972	79.000	0.810	0.043	Y	NA
924261	924262	M28_Spy0054	M28_Spy0055	rplX	rplE	TRUE	0.997	24.000	0.758	0.033	Y	NA
924262	924263	M28_Spy0055	M28_Spy0056	rplE	rpsN	TRUE	0.997	16.000	0.496	0.033	Y	NA
924263	924264	M28_Spy0056	M28_Spy0057	rpsN	rpsH	TRUE	0.912	151.000	0.473	0.033	Y	NA
924264	924265	M28_Spy0057	M28_Spy0058	rpsH	rplF	TRUE	0.929	203.000	0.808	0.033	Y	NA
924265	924266	M28_Spy0058	M28_Spy0059	rplF	rplR	TRUE	0.964	105.000	0.815	0.033	Y	NA
924266	924267	M28_Spy0059	M28_Spy0060	rplR	rpsE	TRUE	0.998	19.000	0.814	0.043	Y	NA
924267	924268	M28_Spy0060	M28_Spy0061	rpsE	rpmD	TRUE	0.998	15.000	0.789	0.043	Y	NA
924268	924269	M28_Spy0061	M28_Spy0062	rpmD	rplO	TRUE	0.919	215.000	0.653	0.005	Y	NA
924269	924270	M28_Spy0062	M28_Spy0063	rplO	secY	TRUE	0.984	17.000	0.730	1.000	N	NA
924270	924271	M28_Spy0063	M28_Spy0064	secY	adk	FALSE	0.390	150.000	0.241	1.000	N	NA
924271	924272	M28_Spy0064	M28_Spy0065	adk	infA	FALSE	0.353	64.000	0.007	1.000	N	NA
924272	924273	M28_Spy0065	M28_Spy0066	infA	rpmJ	TRUE	0.938	26.000	0.020	1.000	Y	NA
924273	924274	M28_Spy0066	M28_Spy0067	rpmJ	rpsM	TRUE	0.988	18.000	0.086	0.033	Y	NA
924274	924275	M28_Spy0067	M28_Spy0068	rpsM	rpsK	TRUE	0.998	18.000	0.810	0.033	Y	NA
924275	924276	M28_Spy0068	M28_Spy0069	rpsK	rpoA	TRUE	0.814	46.000	0.308	1.000	N	NA
924276	924277	M28_Spy0069	M28_Spy0070	rpoA	rplQ	TRUE	0.989	15.000	0.873	1.000	N	NA
924279	924280	M28_SpyR0007	M28_SpyT0029			TRUE	0.640	-246.000	0.000	NA		NA
924280	924281	M28_SpyT0029	M28_SpyR0008			FALSE	0.034	296.000	0.000	NA		NA
924281	924282	M28_SpyR0008	M28_SpyR0009			FALSE	0.158	85.000	0.000	NA		NA
924282	924283	M28_SpyR0009	M28_SpyT0030			TRUE	0.755	18.000	0.000	NA		NA
924283	924284	M28_SpyT0030	M28_SpyT0031			TRUE	0.837	6.000	0.000	NA		NA
924284	924285	M28_SpyT0031	M28_SpyT0032			TRUE	0.535	35.000	0.000	NA		NA
924285	924286	M28_SpyT0032	M28_SpyT0033			TRUE	0.679	23.000	0.000	NA		NA
924286	924287	M28_SpyT0033	M28_SpyT0035			FALSE	0.128	110.000	0.000	NA		NA
924287	924288	M28_SpyT0035	M28_SpyT0036			TRUE	0.709	21.000	0.000	NA		NA
924288	924289	M28_SpyT0036	M28_SpyT0037			TRUE	0.727	20.000	0.000	NA		NA
924289	924290	M28_SpyT0037	M28_SpyT0038			TRUE	0.834	7.000	0.000	NA		NA
924290	924291	M28_SpyT0038	M28_SpyT0039			TRUE	0.813	12.000	0.000	NA		NA
924291	924292	M28_SpyT0039	M28_SpyT0040			TRUE	0.831	9.000	0.000	NA		NA
924292	924293	M28_SpyT0040	M28_SpyT0041			TRUE	0.727	20.000	0.000	NA		NA
924293	924294	M28_SpyT0041	M28_Spy0072			FALSE	0.046	260.000	0.000	NA		NA
924294	924295	M28_Spy0072	M28_Spy0073			FALSE	0.016	638.000	0.000	NA		NA
924295	924296	M28_Spy0073	M28_Spy0074			TRUE	0.912	40.000	0.009	0.002		NA
924296	924297	M28_Spy0074	M28_Spy0075		adcR	FALSE	0.225	110.000	0.008	1.000		NA
924297	924298	M28_Spy0075	M28_Spy0076	adcR	adcC	TRUE	0.954	4.000	0.192	1.000	N	NA
924298	924299	M28_Spy0076	M28_Spy0077	adcC	adcB	TRUE	0.992	-46.000	0.673	1.000	Y	NA
924300	924301	M28_Spy0078	M28_Spy0079		tyrS	TRUE	0.434	51.000	0.004	1.000	N	NA
924302	924303	M28_Spy0080	M28_Spy0081	pbp1b	rpoB	FALSE	0.034	264.000	0.000	1.000	N	NA
924303	924304	M28_Spy0081	M28_Spy0082	rpoB	rpoC	TRUE	0.979	91.000	0.851	0.002	Y	NA
924304	924305	M28_Spy0082	M28_Spy0083	rpoC		FALSE	0.193	152.000	0.007	NA		NA
924305	924306	M28_Spy0083	M28_Spy0084		comYA	FALSE	0.337	93.000	0.083	NA		NA
924306	924307	M28_Spy0084	M28_Spy0085	comYA	comYB	TRUE	0.989	-121.000	0.639	1.000	Y	NA
924307	924308	M28_Spy0085	M28_Spy0086	comYB	comYC	TRUE	0.999	2.000	0.861	0.002	Y	NA
924308	924309	M28_Spy0086	M28_Spy0087	comYC		TRUE	0.968	-25.000	0.110	NA	Y	NA
924309	924310	M28_Spy0087	M28_Spy0088			TRUE	0.982	-43.000	0.786	NA		NA
924310	924311	M28_Spy0088	M28_Spy0089		comYD	TRUE	0.963	-7.000	0.250	NA		NA
924311	924312	M28_Spy0089	M28_Spy0090	comYD		TRUE	0.949	-16.000	0.232	NA		NA
924312	924313	M28_Spy0090	M28_Spy0091			TRUE	0.598	53.000	0.087	NA		NA
924313	924314	M28_Spy0091	M28_Spy0092		ackA	TRUE	0.534	59.000	0.130	1.000	N	NA
924314	924315	M28_Spy0092	M28_Spy0093	ackA		FALSE	0.081	187.000	0.000	NA		NA
924316	924317	M28_Spy0094	M28_Spy0095	proC	pepA	TRUE	0.567	48.000	0.041	1.000	N	NA
924317	924318	M28_Spy0095	M28_Spy0096	pepA		FALSE	0.312	110.000	0.100	NA		NA
924319	924320	M28_Spy0097	M28_Spy0098		trx.1	TRUE	0.948	-3.000	0.140	NA		NA
924320	924321	M28_Spy0098	M28_Spy0099	trx.1		TRUE	0.946	18.000	0.239	1.000		NA
924321	924322	M28_Spy0099	M28_Spy0100		ssb	FALSE	0.239	152.000	0.034	1.000		NA
924323	924324	M28_Spy0101	M28_Spy0102			TRUE	0.793	-28.000	0.005	1.000	N	NA
924324	924325	M28_Spy0102	M28_Spy0103			TRUE	0.793	-85.000	0.034	1.000	N	NA
924325	924326	M28_Spy0103	M28_Spy0104		rofA	FALSE	0.185	147.000	0.003	NA		NA
924327	924328	M28_Spy0105	M28_Spy0106	sfb1		FALSE	0.037	288.000	0.000	NA		NA
924328	924329	M28_Spy0106	M28_Spy0107		cpa	FALSE	0.038	286.000	0.000	NA		NA
924329	924330	M28_Spy0107	M28_Spy0108	cpa		TRUE	0.923	-7.000	0.061	NA		NA
924330	924331	M28_Spy0108	M28_Spy0109			TRUE	0.931	7.000	0.061	NA		NA
924331	924332	M28_Spy0109	M28_Spy0110		eftLSL.B	TRUE	0.986	1.000	0.500	NA		NA
924332	924333	M28_Spy0110	M28_Spy0111	eftLSL.B		TRUE	0.986	-55.000	1.000	NA		NA
924339	924340	M28_Spy0117	M28_Spy0118		atoD.2	TRUE	0.960	-45.000	0.100	1.000	Y	NA
924340	924341	M28_Spy0118	M28_Spy0119	atoD.2		TRUE	0.995	3.000	0.200	0.052	Y	NA
924343	924344	M28_Spy0121	M28_Spy0122		sloR	TRUE	0.650	37.000	0.016	NA	N	NA
924344	924345	M28_Spy0122	M28_Spy0123	sloR		FALSE	0.018	451.000	0.000	NA		NA
924345	924346	M28_Spy0123	M28_Spy0124		ntpI	TRUE	0.905	-10.000	0.029	NA		NA
924346	924347	M28_Spy0124	M28_Spy0125	ntpI	ntpK	TRUE	0.998	2.000	0.848	0.004		NA
924347	924348	M28_Spy0125	M28_Spy0126	ntpK	ntpE	TRUE	0.775	68.000	0.045	0.006		NA
924348	924349	M28_Spy0126	M28_Spy0127	ntpE	ntpC	TRUE	0.978	16.000	0.097	0.006		NA
924349	924350	M28_Spy0127	M28_Spy0128	ntpC	ntpF	TRUE	0.998	-3.000	0.487	0.001	Y	NA
924350	924351	M28_Spy0128	M28_Spy0129	ntpF	ntpA	TRUE	0.890	201.000	0.462	0.004	Y	NA
924351	924352	M28_Spy0129	M28_Spy0130	ntpA	ntpB	TRUE	0.999	1.000	0.776	0.004	Y	NA
924352	924353	M28_Spy0130	M28_Spy0131	ntpB	ntpD	TRUE	0.992	24.000	0.238	0.004	Y	NA
924354	924355	M28_Spy0132	M28_Spy0133			TRUE	0.991	13.000	0.818	NA		NA
924356	924357	M28_Spy0134	M28_Spy0135	purA		FALSE	0.139	327.000	0.000	0.021		NA
924357	924358	M28_Spy0135	M28_Spy0136		nusG	FALSE	0.109	158.000	0.000	1.000		NA
924358	924359	M28_Spy0136	M28_Spy0137	nusG	nga	FALSE	0.027	362.000	0.000	1.000		NA
924359	924360	M28_Spy0137	M28_Spy0138	nga		TRUE	0.972	5.000	0.286	1.000		NA
924360	924361	M28_Spy0138	M28_Spy0139		slo	TRUE	0.924	15.000	0.125	1.000		NA
924361	924362	M28_Spy0139	M28_Spy0140	slo		FALSE	0.049	255.000	0.000	NA		NA
924363	924364	M28_Spy0141	M28_Spy0142			FALSE	0.021	411.000	0.000	NA		NA
924364	924365	M28_Spy0142	M28_Spy0143			FALSE	0.093	175.000	0.000	NA		NA
924366	924367	M28_Spy0144	M28_Spy0145	metB	leuS	FALSE	0.050	212.000	0.000	1.000	N	NA
924367	924368	M28_Spy0145	M28_Spy0146	leuS		FALSE	0.033	307.000	0.000	1.000		NA
924368	924369	M28_Spy0146	M28_Spy0147			TRUE	0.887	71.000	0.431	0.023		NA
924369	924370	M28_Spy0147	M28_Spy0148			TRUE	0.885	123.000	0.279	0.017	Y	NA
924370	924371	M28_Spy0148	M28_Spy0149			TRUE	0.768	109.000	0.328	1.000	Y	NA
924371	924372	M28_Spy0149	M28_Spy0150			TRUE	0.989	-37.000	0.536	1.000	Y	NA
924372	924373	M28_Spy0150	M28_Spy0151		araD	TRUE	0.997	2.000	0.700	1.000	Y	NA
924373	924374	M28_Spy0151	M28_Spy0152	araD		FALSE	0.297	58.000	0.000	NA		NA
924374	924375	M28_Spy0152	M28_Spy0153			FALSE	0.123	121.000	0.000	NA		NA
924375	924376	M28_Spy0153	M28_Spy0154			FALSE	0.221	253.000	0.231	NA		NA
924376	924377	M28_Spy0154	M28_Spy0155		opuAA	FALSE	0.018	487.000	0.000	NA		NA
924377	924378	M28_Spy0155	M28_Spy0156	opuAA	opuABC	TRUE	0.990	16.000	0.177	0.088	Y	NA
924378	924379	M28_Spy0156	M28_Spy0157	opuABC	polA	FALSE	0.164	131.000	0.003	1.000	N	NA
924379	924380	M28_Spy0157	M28_Spy0158	polA		FALSE	0.137	187.000	0.005	NA		NA
924380	924381	M28_Spy0158	M28_Spy0159		perR	TRUE	0.505	52.000	0.010	NA		NA
924381	924382	M28_Spy0159	M28_Spy0160	perR	vlg	FALSE	0.106	157.000	0.000	NA		NA
924382	924383	M28_Spy0160	M28_Spy0161	vlg		FALSE	0.060	222.000	0.000	NA		NA
924383	924384	M28_Spy0161	M28_Spy0162			TRUE	0.823	-7.000	0.000	1.000		NA
924385	924386	M28_Spy0163	M28_Spy0164			TRUE	0.845	40.000	0.000	0.012		NA
924386	924387	M28_Spy0164	M28_Spy0165			FALSE	0.136	103.000	0.000	NA		NA
924387	924388	M28_Spy0165	M28_Spy0166			TRUE	0.553	33.000	0.000	NA		NA
924388	924389	M28_Spy0166	M28_Spy0167			FALSE	0.136	78.000	0.000	NA	N	NA
924391	924392	M28_Spy0169	M28_Spy0170			TRUE	0.968	21.000	0.000	0.079	Y	NA
924392	924393	M28_Spy0170	M28_Spy0171			FALSE	0.234	68.000	0.000	NA		NA
924394	924395	M28_Spy0172	M28_Spy0173		tgt	TRUE	0.840	-3.000	0.000	NA		NA
924395	924396	M28_Spy0173	M28_Spy0174	tgt		FALSE	0.110	217.000	0.004	1.000		NA
924396	924397	M28_Spy0174	M28_Spy0175			TRUE	0.929	4.000	0.039	NA		NA
924397	924398	M28_Spy0175	M28_Spy0176			FALSE	0.245	143.000	0.033	NA		NA
924398	924399	M28_Spy0176	M28_Spy0177			TRUE	0.960	-24.000	0.013	0.021		NA
924401	924402	M28_Spy0179	M28_Spy0180		speG	FALSE	0.051	251.000	0.000	NA		NA
924402	924403	M28_Spy0180	M28_Spy0181	speG		FALSE	0.158	85.000	0.000	NA		NA
924403	924404	M28_Spy0181	M28_Spy0182			TRUE	0.523	36.000	0.000	NA		NA
924404	924405	M28_Spy0182	M28_Spy0183		pgi	FALSE	0.142	97.000	0.000	NA		NA
924407	924408	M28_Spy0185	M28_Spy0186			TRUE	0.616	28.000	0.000	NA		NA
924409	924410	M28_Spy0187	M28_Spy0188	hasC.2	gpsA	TRUE	0.720	27.000	0.007	1.000	N	NA
924411	924412	M28_Spy0189	M28_Spy0190			TRUE	0.917	-7.000	0.080	1.000	N	NA
924412	924413	M28_Spy0190	M28_Spy0191			TRUE	0.999	0.000	0.720	0.009	Y	NA
924413	924414	M28_Spy0191	M28_Spy0192			FALSE	0.220	118.000	0.010	NA		NA
924414	924415	M28_Spy0192	M28_Spy0193			FALSE	0.207	110.000	0.005	NA		NA
924415	924416	M28_Spy0193	M28_Spy0194		radA	FALSE	0.283	81.000	0.028	1.000	N	NA
924416	924417	M28_Spy0194	M28_Spy0195	radA		FALSE	0.125	186.000	0.009	1.000	N	NA
924417	924418	M28_Spy0195	M28_Spy0196			TRUE	0.511	95.000	0.278	NA		NA
924418	924419	M28_Spy0196	M28_Spy0197		gltX	FALSE	0.154	183.000	0.008	NA		NA
924419	924420	M28_Spy0197	M28_Spy0198	gltX	fasB	FALSE	0.016	395.000	0.000	1.000	N	NA
924420	924421	M28_Spy0198	M28_Spy0199	fasB	fasC	TRUE	0.997	-3.000	0.750	NA	Y	NA
924421	924422	M28_Spy0199	M28_Spy0200	fasC	fasA	TRUE	0.996	4.000	0.571	NA	Y	NA
924422	924423	M28_Spy0200	M28_Spy0201	fasA	fasX	FALSE	0.012	540.000	0.000	1.000	N	NA
924423	924424	M28_Spy0201	M28_Spy0202	fasX		TRUE	0.839	-34.000	0.052	1.000	N	NA
924424	924425	M28_Spy0202	M28_Spy0203			TRUE	0.933	12.000	0.106	1.000		NA
924425	924426	M28_Spy0203	M28_Spy0204			FALSE	0.158	85.000	0.000	NA		NA
924426	924427	M28_Spy0204	M28_Spy0205		rpmH	FALSE	0.131	108.000	0.000	NA		NA
924427	924428	M28_Spy0205	M28_Spy0206	rpmH		FALSE	0.044	274.000	0.000	1.000		NA
924428	924429	M28_Spy0206	M28_Spy0207			TRUE	0.956	49.000	0.500	1.000	Y	NA
924429	924430	M28_Spy0207	M28_Spy0208			TRUE	0.993	1.000	0.133	0.044	Y	NA
924430	924431	M28_Spy0208	M28_Spy0209			TRUE	0.999	13.000	1.000	0.044	Y	NA
924431	924432	M28_Spy0209	M28_Spy0210			FALSE	0.106	157.000	0.000	NA		NA
924432	924433	M28_Spy0210	M28_Spy0211		nanH	TRUE	0.982	12.000	0.500	NA		NA
924433	924434	M28_Spy0211	M28_Spy0212	nanH		TRUE	0.857	22.000	0.108	1.000	N	NA
924436	924437	M28_Spy0214	M28_Spy0215	tatD		TRUE	0.953	-49.000	0.058	NA	Y	NA
924437	924438	M28_Spy0215	M28_Spy0216		ksgA	FALSE	0.312	90.000	0.093	1.000	N	NA
924438	924439	M28_Spy0216	M28_Spy0217	ksgA		FALSE	0.035	424.000	0.003	1.000		NA
924439	924440	M28_Spy0217	M28_Spy0218		rpe	TRUE	0.961	10.000	0.213	1.000		NA
924440	924441	M28_Spy0218	M28_Spy0219	rpe		TRUE	0.938	-7.000	0.166	1.000	N	NA
924441	924442	M28_Spy0219	M28_Spy0220			TRUE	0.930	2.000	0.030	NA		NA
924442	924443	M28_Spy0220	M28_Spy0221		cbf	TRUE	0.905	-10.000	0.030	NA		NA
924443	924444	M28_Spy0221	M28_Spy0222	cbf	purR	FALSE	0.108	267.000	0.052	1.000		NA
924444	924445	M28_Spy0222	M28_Spy0223	purR	prgA	TRUE	0.857	-27.000	0.017	NA		NA
924445	924446	M28_Spy0223	M28_Spy0224	prgA	rpsL	FALSE	0.132	208.000	0.012	NA		NA
924446	924447	M28_Spy0224	M28_Spy0225	rpsL	rpsG	TRUE	0.993	21.000	0.224	0.006	Y	NA
924447	924448	M28_Spy0225	M28_Spy0226	rpsG	fus	TRUE	0.536	367.000	0.579	1.000	Y	NA
924448	924449	M28_Spy0226	M28_Spy0227	fus	plr	FALSE	0.023	321.000	0.000	1.000	N	NA
924450	924451	M28_Spy0228	M28_Spy0229			FALSE	0.246	142.000	0.032	NA		NA
924451	924452	M28_Spy0229	M28_Spy0230			TRUE	0.992	-76.000	0.758	1.000	Y	NA
924453	924454	M28_Spy0231	M28_Spy0232			TRUE	0.937	-3.000	0.071	NA		NA
924454	924455	M28_Spy0232	M28_Spy0233		bacA	TRUE	0.512	66.000	0.118	NA		NA
924455	924456	M28_Spy0233	M28_Spy0234	bacA	mecA	FALSE	0.278	140.000	0.132	NA	N	NA
924456	924457	M28_Spy0234	M28_Spy0235	mecA		TRUE	0.963	7.000	0.267	NA	N	NA
924457	924458	M28_Spy0235	M28_Spy0236		rgpG	TRUE	0.716	-30.000	0.000	NA		NA
924458	924459	M28_Spy0236	M28_Spy0237	rgpG		TRUE	0.627	27.000	0.000	NA		NA
924459	924460	M28_Spy0237	M28_Spy0238			TRUE	0.664	95.000	0.139	1.000	Y	NA
924460	924461	M28_Spy0238	M28_Spy0239		nifS3	TRUE	0.954	31.000	0.606	1.000	N	NA
924461	924462	M28_Spy0239	M28_Spy0240	nifS3	nifU	TRUE	0.956	-13.000	0.292	1.000	N	NA
924462	924463	M28_Spy0240	M28_Spy0241	nifU		TRUE	0.985	-7.000	0.152	0.002	N	NA
924464	924465	M28_Spy0242	M28_Spy0243		dacA2	TRUE	0.860	168.000	0.231	0.005	Y	NA
924466	924467	M28_Spy0244	M28_Spy0245	oppA	oppB	TRUE	0.956	53.000	0.273	0.043	Y	NA
924467	924468	M28_Spy0245	M28_Spy0246	oppB	oppC	TRUE	0.998	0.000	0.556	0.043	Y	NA
924468	924469	M28_Spy0246	M28_Spy0247	oppC	oppD	TRUE	0.996	9.000	0.650	1.000	Y	NA
924469	924470	M28_Spy0247	M28_Spy0248	oppD	oppF	TRUE	0.995	-7.000	0.095	0.001	Y	NA
924471	924472	M28_Spy0249	M28_Spy0250			FALSE	0.024	375.000	0.000	NA		NA
924473	924474	M28_SpyR0010	M28_SpyT0042			TRUE	0.640	-246.000	0.000	NA		NA
924474	924475	M28_SpyT0042	M28_SpyR0011			FALSE	0.034	296.000	0.000	NA		NA
924475	924476	M28_SpyR0011	M28_SpyR0012			FALSE	0.158	85.000	0.000	NA		NA
924476	924477	M28_SpyR0012	M28_SpyT0043			TRUE	0.837	6.000	0.000	NA		NA
924477	924478	M28_SpyT0043	M28_SpyT0044			FALSE	0.174	80.000	0.000	NA		NA
924478	924479	M28_SpyT0044	M28_Spy0251		comX	TRUE	0.825	-4.000	0.000	NA		NA
924479	924480	M28_Spy0251	M28_Spy0252	comX		FALSE	0.018	502.000	0.000	1.000		NA
924480	924481	M28_Spy0252	M28_Spy0253			TRUE	0.988	0.000	0.555	1.000		NA
924481	924482	M28_Spy0253	M28_Spy0254			TRUE	0.896	-22.000	0.068	NA		NA
924482	924483	M28_Spy0254	M28_Spy0255		nadD	TRUE	0.474	69.000	0.150	NA	N	NA
924483	924484	M28_Spy0255	M28_Spy0256	nadD		TRUE	0.987	-3.000	0.199	1.000	Y	NA
924484	924485	M28_Spy0256	M28_Spy0257			TRUE	0.915	-24.000	0.149	NA		NA
924485	924486	M28_Spy0257	M28_Spy0258			TRUE	0.943	0.000	0.085	NA		NA
924486	924487	M28_Spy0258	M28_Spy0259			FALSE	0.136	254.000	0.094	NA		NA
924487	924488	M28_Spy0259	M28_Spy0260			FALSE	0.029	338.000	0.000	NA		NA
924488	924489	M28_Spy0260	M28_Spy0261			TRUE	0.801	-10.000	0.000	NA		NA
924489	924490	M28_Spy0261	M28_Spy0262			FALSE	0.071	203.000	0.000	NA		NA
924490	924491	M28_Spy0262	M28_Spy0263			FALSE	0.021	327.000	0.000	NA	N	NA
924491	924492	M28_Spy0263	M28_Spy0264			FALSE	0.218	250.000	0.000	NA	Y	NA
924492	924493	M28_Spy0264	M28_Spy0265			TRUE	0.998	1.000	0.938	1.000	Y	NA
924496	924497	M28_Spy0268	M28_Spy0269			TRUE	0.998	10.000	0.490	0.004	Y	NA
924497	924498	M28_Spy0269	M28_Spy0270		gidB	FALSE	0.297	70.000	0.006	1.000	N	NA
924499	924500	M28_Spy0271	M28_Spy0272	lemA		TRUE	0.771	47.000	0.222	NA		NA
924500	924501	M28_Spy0272	M28_Spy0273			FALSE	0.093	231.000	0.002	NA		NA
924501	924502	M28_Spy0273	M28_Spy0274		covR	FALSE	0.088	267.000	0.014	NA		NA
924502	924503	M28_Spy0274	M28_Spy0275	covR	covS	TRUE	0.997	6.000	0.438	0.086	Y	NA
924503	924504	M28_Spy0275	M28_Spy0276	covS		FALSE	0.093	215.000	0.007	NA	N	NA
924504	924505	M28_Spy0276	M28_Spy0277		dnaB	TRUE	0.899	-16.000	0.109	NA	N	NA
924505	924506	M28_Spy0277	M28_Spy0278	dnaB	dnaI	TRUE	0.997	1.000	0.817	NA	Y	NA
924506	924507	M28_Spy0278	M28_Spy0279	dnaI	pgdA	TRUE	0.419	63.000	0.008	1.000		NA
924507	924508	M28_Spy0279	M28_Spy0280	pgdA	snf	FALSE	0.119	207.000	0.004	1.000		NA
924508	924509	M28_Spy0280	M28_Spy0281	snf		FALSE	0.175	243.000	0.151	NA		NA
924509	924510	M28_Spy0281	M28_Spy0282		murC	TRUE	0.663	40.000	0.013	NA		NA
924510	924511	M28_Spy0282	M28_Spy0283	murC		TRUE	0.609	46.000	0.014	1.000		NA
924511	924512	M28_Spy0283	M28_Spy0284			FALSE	0.319	112.000	0.120	NA		NA
924512	924513	M28_Spy0284	M28_Spy0285		greA	TRUE	0.843	25.000	0.079	NA		NA
924514	924515	M28_Spy0286	M28_Spy0287			FALSE	0.390	82.000	0.154	1.000	N	NA
924516	924517	M28_Spy0288	M28_Spy0289			TRUE	0.716	39.000	0.043	1.000		NA
924517	924518	M28_Spy0289	M28_Spy0290			TRUE	0.922	15.000	0.123	NA		NA
924518	924519	M28_Spy0290	M28_Spy0291			FALSE	0.090	178.000	0.000	NA		NA
924519	924520	M28_Spy0291	M28_Spy0292		glr	FALSE	0.175	178.000	0.014	NA		NA
924520	924521	M28_Spy0292	M28_Spy0293	glr		TRUE	0.914	-3.000	0.034	1.000	N	NA
924521	924522	M28_Spy0293	M28_Spy0294			TRUE	0.905	-21.000	0.085	1.000		NA
924522	924523	M28_Spy0294	M28_Spy0295			TRUE	0.937	-3.000	0.065	1.000		NA
924523	924524	M28_Spy0295	M28_Spy0296			TRUE	0.945	-3.000	0.111	1.000		NA
924524	924525	M28_Spy0296	M28_Spy0297			TRUE	0.925	0.000	0.017	NA		NA
924525	924526	M28_Spy0297	M28_Spy0298			TRUE	0.988	-3.000	0.570	NA		NA
924526	924527	M28_Spy0298	M28_Spy0299			TRUE	0.425	98.000	0.224	NA	N	NA
924527	924528	M28_Spy0299	M28_Spy0300			TRUE	0.918	-3.000	0.014	NA		NA
924528	924529	M28_Spy0300	M28_Spy0301			FALSE	0.186	142.000	0.002	NA		NA
924529	924530	M28_Spy0301	M28_Spy0302			FALSE	0.031	312.000	0.000	NA		NA
924530	924531	M28_Spy0302	M28_Spy0303			TRUE	0.989	2.000	0.600	NA		NA
924531	924532	M28_Spy0303	M28_Spy0304			FALSE	0.101	275.000	0.050	1.000		NA
924532	924533	M28_Spy0304	M28_Spy0305			TRUE	0.977	12.000	0.408	NA		NA
924533	924534	M28_Spy0305	M28_Spy0306		hlyX	FALSE	0.282	94.000	0.023	NA		NA
924534	924535	M28_Spy0306	M28_Spy0307	hlyX	pflC	TRUE	0.923	6.000	0.028	NA		NA
924535	924536	M28_Spy0307	M28_Spy0308	pflC	ppaC	FALSE	0.213	125.000	0.023	1.000	N	NA
924536	924537	M28_Spy0308	M28_Spy0309	ppaC		TRUE	0.606	46.000	0.015	NA		NA
924538	924539	M28_Spy0310	M28_Spy0311	fhuG	fhuB	TRUE	0.998	-39.000	0.857	0.043	Y	NA
924539	924540	M28_Spy0311	M28_Spy0312	fhuB	fhuD	TRUE	0.982	-10.000	0.179	1.000	Y	NA
924540	924541	M28_Spy0312	M28_Spy0313	fhuD	fhuA	TRUE	0.993	26.000	0.889	1.000	Y	NA
924541	924542	M28_Spy0313	M28_Spy0314	fhuA	murE	FALSE	0.114	246.000	0.062	1.000	N	NA
924543	924544	M28_Spy0315	M28_Spy0316		upp	FALSE	0.159	168.000	0.002	1.000		NA
924544	924545	M28_Spy0316	M28_Spy0317	upp	clpP	FALSE	0.093	224.000	0.010	1.000	N	NA
924545	924546	M28_Spy0317	M28_Spy0318	clpP		FALSE	0.047	495.000	0.065	NA		NA
924546	924547	M28_Spy0318	M28_Spy0319		tdk	FALSE	0.051	249.000	0.000	NA		NA
924547	924548	M28_Spy0319	M28_Spy0320	tdk	dnaX	TRUE	0.941	18.000	0.254	1.000	N	NA
924548	924549	M28_Spy0320	M28_Spy0321	dnaX		FALSE	0.081	187.000	0.000	NA		NA
924549	924550	M28_Spy0321	M28_Spy0322			FALSE	0.108	155.000	0.000	NA		NA
924550	924551	M28_Spy0322	M28_Spy0323			TRUE	0.929	5.000	0.043	NA		NA
924551	924552	M28_Spy0323	M28_Spy0324			TRUE	0.752	27.000	0.005	NA		NA
924556	924557	M28_Spy0328	M28_Spy0329	lctO	prtS	FALSE	0.046	266.000	0.000	1.000		NA
924557	924558	M28_Spy0329	M28_Spy0330	prtS		FALSE	0.018	491.000	0.000	NA		NA
924558	924559	M28_Spy0330	M28_Spy0331			FALSE	0.136	103.000	0.000	NA		NA
924559	924560	M28_Spy0331	M28_Spy0332		metS	FALSE	0.055	240.000	0.000	NA		NA
924560	924561	M28_Spy0332	M28_Spy0333	metS		FALSE	0.026	363.000	0.000	NA		NA
924561	924562	M28_Spy0333	M28_Spy0334		nrdF.1	TRUE	0.840	-3.000	0.000	NA		NA
924562	924563	M28_Spy0334	M28_Spy0335	nrdF.1	nrdI	TRUE	0.996	4.000	0.643	NA	Y	NA
924563	924564	M28_Spy0335	M28_Spy0336	nrdI	nrdE.1	TRUE	0.996	-33.000	1.000	NA	Y	NA
924567	924568	M28_Spy0339	M28_Spy0340			FALSE	0.036	289.000	0.000	NA		NA
924569	924570	M28_Spy0341	M28_Spy0342			FALSE	0.070	205.000	0.000	NA		NA
924574	924575	M28_Spy0346	M28_Spy0347			FALSE	0.016	615.000	0.000	NA		NA
924575	924576	M28_Spy0347	M28_Spy0348			TRUE	0.989	-7.000	0.710	NA		NA
924576	924577	M28_Spy0348	M28_Spy0349			TRUE	0.700	43.000	0.067	1.000		NA
924577	924578	M28_Spy0349	M28_Spy0350			FALSE	0.031	327.000	0.000	1.000		NA
924578	924579	M28_Spy0350	M28_Spy0351		gcaD	FALSE	0.123	173.000	0.002	1.000	N	NA
924579	924580	M28_Spy0351	M28_Spy0352	gcaD		TRUE	0.711	31.000	0.015	1.000	N	NA
924580	924581	M28_Spy0352	M28_Spy0353			TRUE	0.924	-3.000	0.025	NA		NA
924581	924582	M28_Spy0353	M28_Spy0354		pfs	TRUE	0.869	20.000	0.041	NA		NA
924582	924583	M28_Spy0354	M28_Spy0355	pfs		FALSE	0.114	151.000	0.000	NA		NA
924585	924586	M28_Spy0357	M28_Spy0358	mtsA	mtsB	TRUE	0.924	37.000	0.135	1.000	Y	NA
924586	924587	M28_Spy0358	M28_Spy0359	mtsB	mtsC	TRUE	0.985	1.000	0.130	1.000	Y	NA
924591	924592	M28_Spy0363	M28_Spy0364	rplK	rplA	TRUE	0.964	106.000	0.838	0.040	Y	NA
924592	924593	M28_Spy0364	M28_Spy0365	rplA	pyrH	FALSE	0.039	322.000	0.002	1.000	N	NA
924593	924594	M28_Spy0365	M28_Spy0366	pyrH	rrf	TRUE	0.959	29.000	0.626	1.000	N	NA
924594	924595	M28_Spy0366	M28_Spy0367	rrf		FALSE	0.232	109.000	0.012	NA		NA
924595	924596	M28_Spy0367	M28_Spy0368		msrA.2	FALSE	0.353	73.000	0.016	NA		NA
924596	924597	M28_Spy0368	M28_Spy0369	msrA.2		TRUE	0.927	-9.000	0.080	1.000		NA
924597	924598	M28_Spy0369	M28_Spy0370			FALSE	0.249	120.000	0.023	1.000		NA
924598	924599	M28_Spy0370	M28_Spy0371			FALSE	0.055	240.000	0.000	NA		NA
924599	924600	M28_Spy0371	M28_Spy0372		phoH	FALSE	0.167	159.000	0.004	NA		NA
924600	924601	M28_Spy0372	M28_Spy0373	phoH		TRUE	0.497	46.000	0.005	NA	N	NA
924601	924602	M28_Spy0373	M28_Spy0374			FALSE	0.206	108.000	0.003	NA		NA
924602	924603	M28_Spy0374	M28_Spy0375		dgk	TRUE	0.886	-19.000	0.035	NA		NA
924603	924604	M28_Spy0375	M28_Spy0376	dgk	era	FALSE	0.284	120.000	0.063	1.000		NA
924604	924605	M28_Spy0376	M28_Spy0377	era		TRUE	0.846	-25.000	0.007	1.000		NA
924607	924608	M28_Spy0379	M28_Spy0380			TRUE	0.979	15.000	0.500	NA		NA
924609	924610	M28_Spy0381	M28_Spy0382			TRUE	0.922	-87.000	0.000	0.009		NA
924611	924612	M28_Spy0383	M28_Spy0384			TRUE	0.969	13.000	0.333	NA		NA
924612	924613	M28_Spy0384	M28_Spy0385		silD	FALSE	0.026	361.000	0.000	NA		NA
924613	924614	M28_Spy0385	M28_Spy0386	silD		TRUE	0.915	50.000	0.667	NA		NA
924614	924615	M28_Spy0386	M28_Spy0387			FALSE	0.089	179.000	0.000	NA		NA
924617	924618	M28_Spy0389	M28_Spy0390			FALSE	0.142	97.000	0.000	NA		NA
924620	924621	M28_Spy0392	M28_Spy0393			TRUE	0.845	3.000	0.000	NA		NA
924623	924624	M28_Spy0395	M28_Spy0396	mutR	fpg	FALSE	0.160	172.000	0.004	1.000		NA
924624	924625	M28_Spy0396	M28_Spy0397	fpg		TRUE	0.815	-90.000	0.066	1.000	N	NA
924625	924626	M28_Spy0397	M28_Spy0398			FALSE	0.084	190.000	0.000	1.000		NA
924626	924627	M28_Spy0398	M28_Spy0399			FALSE	0.216	122.000	0.007	1.000		NA
924627	924628	M28_Spy0399	M28_Spy0400			TRUE	0.899	-3.000	0.012	1.000	N	NA
924628	924629	M28_Spy0400	M28_Spy0401		secG	TRUE	0.542	46.000	0.012	1.000	N	NA
924629	924630	M28_Spy0401	M28_Spy0402	secG		FALSE	0.284	94.000	0.064	1.000	N	NA
924630	924631	M28_Spy0402	M28_Spy0403			TRUE	0.981	3.000	0.143	0.034	N	NA
924631	924632	M28_Spy0403	M28_Spy0404			TRUE	0.964	6.000	0.000	1.000	Y	NA
924633	924634	M28_Spy0405	M28_Spy0406	pcp		TRUE	0.797	50.000	0.300	NA		NA
924634	924635	M28_Spy0406	M28_Spy0407			TRUE	0.995	0.000	0.939	NA		NA
924635	924636	M28_Spy0407	M28_Spy0408			FALSE	0.109	154.000	0.000	NA		NA
924636	924637	M28_Spy0408	M28_Spy0409		gloA	FALSE	0.237	85.000	0.012	NA	N	NA
924637	924638	M28_Spy0409	M28_Spy0410	gloA		TRUE	0.895	11.000	0.019	1.000	N	NA
924638	924639	M28_Spy0410	M28_Spy0411		pepQ	TRUE	0.568	49.000	0.053	1.000	N	NA
924640	924641	M28_Spy0412	M28_Spy0413	ccpA		FALSE	0.222	131.000	0.033	1.000	N	NA
924641	924642	M28_Spy0413	M28_Spy0414			TRUE	0.998	2.000	0.413	0.011	Y	NA
924642	924643	M28_Spy0414	M28_Spy0415		thrS	FALSE	0.015	422.000	0.000	1.000	N	NA
924643	924644	M28_Spy0415	M28_Spy0416	thrS		FALSE	0.225	141.000	0.012	1.000		NA
924644	924645	M28_Spy0416	M28_Spy0417			TRUE	0.697	-40.000	0.000	NA		NA
924645	924646	M28_Spy0417	M28_Spy0418			TRUE	0.933	2.000	0.042	NA		NA
924646	924647	M28_Spy0418	M28_Spy0419			FALSE	0.155	86.000	0.000	NA		NA
924647	924648	M28_Spy0419	M28_Spy0420			FALSE	0.023	395.000	0.000	1.000		NA
924648	924649	M28_Spy0420	M28_Spy0421			TRUE	0.990	-43.000	0.576	1.000	Y	NA
924649	924650	M28_Spy0421	M28_Spy0422			TRUE	0.514	56.000	0.030	NA		NA
924650	924651	M28_Spy0422	M28_Spy0423		vicR	FALSE	0.191	162.000	0.013	NA		NA
924651	924652	M28_Spy0423	M28_Spy0424	vicR	vicK	TRUE	0.998	-7.000	0.597	0.058	Y	NA
924652	924653	M28_Spy0424	M28_Spy0425	vicK	vicX	TRUE	0.931	4.000	0.038	1.000		NA
924653	924654	M28_Spy0425	M28_Spy0426	vicX	acpA	FALSE	0.033	433.000	0.002	1.000		NA
924654	924655	M28_Spy0426	M28_Spy0427	acpA	smc	TRUE	0.939	1.000	0.120	1.000	N	NA
924657	924658	M28_Spy0429	M28_Spy0430	aroE.2		TRUE	0.786	-3.000	0.000	NA	N	NA
924658	924659	M28_Spy0430	M28_Spy0431			TRUE	0.753	-22.000	0.000	NA		NA
924659	924660	M28_Spy0431	M28_Spy0432			TRUE	0.816	-7.000	0.000	NA		NA
924660	924661	M28_Spy0432	M28_Spy0433		metK1	TRUE	0.827	10.000	0.000	NA		NA
924661	924662	M28_Spy0433	M28_Spy0434	metK1		TRUE	0.774	-16.000	0.000	NA		NA
924662	924663	M28_Spy0434	M28_Spy0435			FALSE	0.316	55.000	0.000	NA		NA
924663	924664	M28_Spy0435	M28_Spy0436			FALSE	0.022	403.000	0.000	NA		NA
924664	924665	M28_Spy0436	M28_Spy0437			TRUE	0.664	24.000	0.000	NA		NA
924665	924666	M28_Spy0437	M28_Spy0438		mefE	FALSE	0.128	117.000	0.000	1.000		NA
924667	924668	M28_Spy0439	M28_Spy0440			TRUE	0.974	-10.000	0.400	NA		NA
924668	924669	M28_Spy0440	M28_Spy0441			TRUE	0.808	-9.000	0.000	NA		NA
924669	924670	M28_Spy0441	M28_Spy0442			TRUE	0.983	0.000	0.429	NA		NA
924671	924672	M28_Spy0443	M28_Spy0444			TRUE	0.616	28.000	0.000	NA		NA
924672	924673	M28_Spy0444	M28_Spy0445			TRUE	0.972	0.000	0.273	NA		NA
924673	924674	M28_Spy0445	M28_Spy0446			TRUE	0.570	133.000	0.400	NA		NA
924674	924675	M28_Spy0446	M28_Spy0447			FALSE	0.134	105.000	0.000	NA		NA
924676	924677	M28_Spy0448	M28_Spy0449			TRUE	0.873	120.000	0.333	0.074	Y	NA
924677	924678	M28_Spy0449	M28_Spy0450			FALSE	0.165	82.000	0.000	NA		NA
924679	924680	M28_Spy0451	M28_Spy0452			TRUE	0.993	4.000	0.375	0.019		NA
924680	924681	M28_Spy0452	M28_Spy0453		ftsY	TRUE	0.969	0.000	0.007	0.082		NA
924683	924684	M28_Spy0455	M28_Spy0456	licT		TRUE	0.971	2.000	0.259	1.000		NA
924684	924685	M28_Spy0456	M28_Spy0457		bglA	TRUE	0.984	19.000	0.318	1.000	Y	NA
924686	924687	M28_Spy0458	M28_Spy0459			TRUE	0.988	-24.000	0.841	NA		NA
924690	924691	M28_Spy0461	M28_Spy0463			TRUE	0.911	-58.000	0.215	NA		NA
924691	924692	M28_Spy0463	M28_Spy0464			TRUE	0.474	64.000	0.051	NA		NA
924692	924693	M28_Spy0464	M28_Spy0465		ptsK	FALSE	0.220	305.000	0.017	NA	Y	NA
924693	924694	M28_Spy0465	M28_Spy0466	ptsK	lgt	TRUE	0.982	-3.000	0.494	1.000	N	NA
924694	924695	M28_Spy0466	M28_Spy0467	lgt		TRUE	0.867	22.000	0.079	NA		NA
924695	924696	M28_Spy0467	M28_Spy0468			TRUE	0.928	-28.000	0.206	NA		NA
924698	924699	M28_Spy0470	M28_Spy0471			TRUE	0.879	102.000	0.156	0.003	Y	NA
924699	924700	M28_Spy0471	M28_Spy0472			FALSE	0.064	217.000	0.000	NA		NA
924701	924702	M28_Spy0473	M28_Spy0474		lysS	FALSE	0.124	136.000	0.000	NA		NA
924704	924705	M28_Spy0476	M28_Spy0477			FALSE	0.061	341.000	0.018	NA		NA
924705	924706	M28_Spy0477	M28_Spy0478			FALSE	0.262	90.000	0.010	NA		NA
924706	924707	M28_Spy0478	M28_Spy0479			FALSE	0.122	224.000	0.016	NA		NA
924708	924709	M28_Spy0480	M28_Spy0481			TRUE	0.968	-16.000	0.375	NA		NA
924710	924711	M28_Spy0482	M28_Spy0483		pepF	FALSE	0.359	73.000	0.059	1.000	N	NA
924712	924713	M28_Spy0484	M28_Spy0485	ppc	ftsW	FALSE	0.212	140.000	0.028	1.000	N	NA
924715	924716	M28_Spy0487	M28_Spy0488	tuf	tpi	FALSE	0.074	241.000	0.003	1.000	N	NA
924717	924718	M28_Spy0489	M28_Spy0490		murM	TRUE	0.994	-13.000	0.200	0.011	Y	NA
924718	924719	M28_Spy0490	M28_Spy0491	murM		TRUE	0.979	-15.000	0.500	1.000		NA
924719	924720	M28_Spy0491	M28_Spy0492			FALSE	0.114	151.000	0.000	NA		NA
924720	924721	M28_Spy0492	M28_Spy0493			FALSE	0.208	72.000	0.000	NA		NA
924722	924723	M28_Spy0494	M28_Spy0495		pacL	FALSE	0.058	230.000	0.000	NA		NA
924724	924725	M28_Spy0496	M28_Spy0497	regR		TRUE	0.959	28.000	0.562	NA		NA
924725	924726	M28_Spy0497	M28_Spy0498		agaD	TRUE	0.727	68.000	0.375	NA		NA
924726	924727	M28_Spy0498	M28_Spy0499	agaD		TRUE	0.998	-73.000	0.933	0.021	Y	NA
924727	924728	M28_Spy0499	M28_Spy0500		agaV	TRUE	0.999	19.000	0.933	0.021	Y	NA
924728	924729	M28_Spy0500	M28_Spy0501	agaV		TRUE	0.842	36.000	0.200	1.000		NA
924729	924730	M28_Spy0501	M28_Spy0502			TRUE	0.949	0.000	0.120	1.000		NA
924731	924732	M28_Spy0503	M28_Spy0504	idnO		TRUE	0.880	25.000	0.197	1.000	N	NA
924732	924733	M28_Spy0504	M28_Spy0505			TRUE	0.977	-10.000	0.094	1.000	Y	NA
924733	924734	M28_Spy0505	M28_Spy0506		kgdA	TRUE	0.980	-13.000	0.167	1.000	Y	NA
924734	924735	M28_Spy0506	M28_Spy0507	kgdA		FALSE	0.132	290.000	0.000	0.047		NA
924735	924736	M28_Spy0507	M28_Spy0508			FALSE	0.016	645.000	0.000	1.000		NA
924736	924737	M28_Spy0508	M28_Spy0509		prfB	FALSE	0.156	154.000	0.006	1.000	N	NA
924737	924738	M28_Spy0509	M28_Spy0510	prfB	ftsE	TRUE	0.862	19.000	0.053	1.000	N	NA
924738	924739	M28_Spy0510	M28_Spy0511	ftsE	ftsX	TRUE	0.986	-37.000	0.431	1.000	Y	NA
924741	924742	M28_Spy0513	M28_Spy0514		dinG	FALSE	0.100	108.000	0.000	1.000	N	NA
924742	924743	M28_Spy0514	M28_Spy0515	dinG	aspC	FALSE	0.022	335.000	0.000	1.000	N	NA
924743	924744	M28_Spy0515	M28_Spy0516	aspC	asnS	TRUE	0.775	30.000	0.068	1.000	N	NA
924744	924745	M28_Spy0516	M28_Spy0517	asnS		FALSE	0.021	415.000	0.000	NA		NA
924745	924746	M28_Spy0517	M28_Spy0518			TRUE	0.964	-3.000	0.214	NA		NA
924746	924747	M28_Spy0518	M28_Spy0519			TRUE	0.983	-3.000	0.470	NA		NA
924747	924748	M28_Spy0519	M28_Spy0520		pepD	FALSE	0.236	133.000	0.015	NA		NA
924748	924749	M28_Spy0520	M28_Spy0521	pepD		FALSE	0.389	152.000	0.250	1.000	N	NA
924749	924750	M28_Spy0521	M28_Spy0522			FALSE	0.262	139.000	0.091	1.000	N	NA
924750	924751	M28_Spy0522	M28_Spy0523		agaS	TRUE	0.906	20.000	0.178	1.000	N	NA
924752	924753	M28_Spy0524	M28_Spy0525	rpmE		FALSE	0.249	115.000	0.020	1.000		NA
924754	924755	M28_Spy0526	M28_Spy0527			FALSE	0.262	175.000	0.167	1.000	N	NA
924755	924756	M28_Spy0527	M28_Spy0528			TRUE	0.892	-19.000	0.094	1.000	N	NA
924756	924757	M28_Spy0528	M28_Spy0529		rplS	FALSE	0.174	115.000	0.006	1.000	N	NA
924757	924758	M28_Spy0529	M28_SpyT0045	rplS		FALSE	0.053	247.000	0.000	NA		NA
924760	924761	M28_Spy0531	M28_Spy0532		gyrB	TRUE	0.924	1.000	0.013	1.000		NA
924761	924762	M28_Spy0532	M28_Spy0533	gyrB		FALSE	0.040	368.000	0.011	1.000	N	NA
924765	924766	M28_Spy0536	M28_Spy0537			TRUE	0.823	-6.000	0.000	NA		NA
924766	924767	M28_Spy0537	M28_Spy0538			FALSE	0.024	375.000	0.000	NA		NA
924768	924769	M28_Spy0539	M28_Spy0540	epf	sagA	FALSE	0.014	865.000	0.000	NA		NA
924769	924770	M28_Spy0540	M28_Spy0541	sagA	sagB	FALSE	0.060	222.000	0.000	NA		NA
924770	924771	M28_Spy0541	M28_Spy0542	sagB	sagC	TRUE	0.961	-3.000	0.200	NA		NA
924771	924772	M28_Spy0542	M28_Spy0543	sagC	sagD	TRUE	0.950	20.000	0.318	NA		NA
924772	924773	M28_Spy0543	M28_Spy0544	sagD	sagE	TRUE	0.906	-25.000	0.136	NA		NA
924773	924774	M28_Spy0544	M28_Spy0545	sagE	sagF	TRUE	0.992	-3.000	0.750	NA		NA
924774	924775	M28_Spy0545	M28_Spy0546	sagF	sagG	TRUE	0.979	23.000	0.750	NA		NA
924775	924776	M28_Spy0546	M28_Spy0547	sagG	sagH	TRUE	0.982	9.000	0.500	1.000	N	NA
924776	924777	M28_Spy0547	M28_Spy0548	sagH	sagI	TRUE	0.995	-3.000	0.160	0.008	Y	NA
924777	924778	M28_Spy0548	M28_Spy0549	sagI		FALSE	0.017	574.000	0.000	1.000		NA
924778	924779	M28_Spy0549	M28_Spy0550			FALSE	0.040	278.000	0.000	NA		NA
924779	924780	M28_Spy0550	M28_Spy0551		lig	FALSE	0.144	194.000	0.010	NA		NA
924780	924781	M28_Spy0551	M28_Spy0552	lig		TRUE	0.868	14.000	0.013	1.000	N	NA
924781	924782	M28_Spy0552	M28_Spy0553		atpE	FALSE	0.023	392.000	0.000	1.000		NA
924782	924783	M28_Spy0553	M28_Spy0554	atpE	atpB	TRUE	0.950	35.000	0.189	0.009		NA
924783	924784	M28_Spy0554	M28_Spy0555	atpB	atpF	TRUE	0.989	18.000	0.032	0.009	Y	NA
924784	924785	M28_Spy0555	M28_Spy0556	atpF	atpH	TRUE	0.997	0.000	0.222	0.009	Y	NA
924785	924786	M28_Spy0556	M28_Spy0557	atpH	atpA	TRUE	0.999	16.000	0.864	0.009	Y	NA
924786	924787	M28_Spy0557	M28_Spy0558	atpA	atpG	TRUE	0.999	16.000	0.846	0.009	Y	NA
924787	924788	M28_Spy0558	M28_Spy0559	atpG	atpD	TRUE	0.953	162.000	0.724	0.009	Y	NA
924788	924789	M28_Spy0559	M28_Spy0560	atpD	atpC	TRUE	0.999	13.000	0.837	0.009	Y	NA
924789	924790	M28_Spy0560	M28_Spy0561	atpC		FALSE	0.102	266.000	0.039	NA		NA
924790	924791	M28_Spy0561	M28_Spy0562		murA	TRUE	0.679	65.000	0.279	NA		NA
924791	924792	M28_Spy0562	M28_Spy0563	murA	epuA	TRUE	0.944	4.000	0.110	NA		NA
924792	924793	M28_Spy0563	M28_Spy0564	epuA		TRUE	0.664	24.000	0.000	NA		NA
924793	924794	M28_Spy0564	M28_Spy0565		endA	TRUE	0.961	-16.000	0.000	0.003		NA
924794	924795	M28_Spy0565	M28_Spy0566	endA	pheS	FALSE	0.041	283.000	0.000	1.000		NA
924795	924796	M28_Spy0566	M28_Spy0567	pheS	pheT	TRUE	0.933	195.000	0.574	0.001	Y	NA
924796	924797	M28_Spy0567	M28_Spy0568	pheT		FALSE	0.244	74.000	0.002	1.000	N	NA
924797	924798	M28_Spy0568	M28_Spy0569			TRUE	0.891	-7.000	0.006	NA		NA
924798	924799	M28_Spy0569	M28_Spy0570			TRUE	0.432	73.000	0.095	NA		NA
924799	924800	M28_Spy0570	M28_Spy0571			TRUE	0.982	7.000	0.444	1.000		NA
924802	924803	M28_Spy0573	M28_Spy0574	rexB	rexA	TRUE	0.981	-39.000	0.070	0.072	Y	NA
924803	924804	M28_Spy0574	M28_Spy0575	rexA		FALSE	0.094	116.000	0.000	1.000	N	NA
924804	924805	M28_Spy0575	M28_Spy0576		rpsU	FALSE	0.248	141.000	0.027	1.000		NA
924807	924808	M28_Spy0578	M28_Spy0579	dnaG	rpoD	TRUE	0.955	9.000	0.209	1.000	N	NA
924808	924809	M28_Spy0579	M28_Spy0580	rpoD		FALSE	0.130	236.000	0.044	NA		NA
924809	924810	M28_Spy0580	M28_Spy0581		rmlD	TRUE	0.456	78.000	0.152	NA		NA
924810	924811	M28_Spy0581	M28_Spy0582	rmlD	rgpAc	TRUE	0.692	119.000	0.212	1.000	Y	NA
924811	924812	M28_Spy0582	M28_Spy0583	rgpAc	rgpBc	TRUE	0.964	-10.000	0.289	NA		NA
924812	924813	M28_Spy0583	M28_Spy0584	rgpBc	rgpCc	TRUE	0.973	3.000	0.289	NA		NA
924813	924814	M28_Spy0584	M28_Spy0585	rgpCc	rgpDc	TRUE	0.805	0.000	0.000	1.000	N	NA
924814	924815	M28_Spy0585	M28_Spy0586	rgpDc	rgpEc	TRUE	0.647	25.000	0.000	NA		NA
924815	924816	M28_Spy0586	M28_Spy0587	rgpEc	rgpFc	TRUE	0.979	-3.000	0.385	NA		NA
924816	924817	M28_Spy0587	M28_Spy0588	rgpFc		TRUE	0.964	-3.000	0.000	NA	Y	NA
924817	924818	M28_Spy0588	M28_Spy0589			FALSE	0.336	179.000	0.000	NA	Y	NA
924818	924819	M28_Spy0589	M28_Spy0590			TRUE	0.988	2.000	0.568	NA		NA
924819	924820	M28_Spy0590	M28_Spy0591		amrA	TRUE	0.912	-7.000	0.027	NA		NA
924820	924821	M28_Spy0591	M28_Spy0592	amrA		TRUE	0.933	-19.000	0.182	NA		NA
924821	924822	M28_Spy0592	M28_Spy0593		pepT	FALSE	0.165	82.000	0.000	NA		NA
924822	924823	M28_Spy0593	M28_Spy0594	pepT	ebsA	TRUE	0.694	41.000	0.051	NA		NA
924825	924826	M28_Spy0596	M28_Spy0597		cmk	TRUE	0.884	15.000	0.012	1.000		NA
924826	924827	M28_Spy0597	M28_Spy0598	cmk	infC	FALSE	0.156	162.000	0.010	1.000	N	NA
924827	924828	M28_Spy0598	M28_Spy0599	infC	rpl36	TRUE	0.977	42.000	0.652	1.000	Y	NA
924828	924829	M28_Spy0599	M28_Spy0600	rpl36	rplT	TRUE	0.989	59.000	0.928	0.028	Y	NA
924831	924832	M28_Spy0602	M28_Spy0603		aroD	TRUE	0.946	-3.000	0.125	1.000		NA
924832	924833	M28_Spy0603	M28_Spy0604	aroD	aroF	TRUE	0.824	94.000	0.004	0.003	Y	NA
924833	924834	M28_Spy0604	M28_Spy0605	aroF		TRUE	0.408	61.000	0.005	NA		NA
924837	924838	M28_Spy0608	M28_Spy0609	folC.2		TRUE	0.973	6.000	0.308	NA		NA
924839	924840	M28_Spy0610	M28_Spy0611	nifS1	thiI	TRUE	0.969	12.000	0.349	1.000	N	NA
924840	924841	M28_Spy0611	M28_Spy0612	thiI	capA	TRUE	0.642	38.000	0.014	1.000	N	NA
924841	924842	M28_Spy0612	M28_Spy0613	capA	rplU	FALSE	0.049	214.000	0.000	1.000	N	NA
924842	924843	M28_Spy0613	M28_Spy0614	rplU		TRUE	0.985	12.000	0.208	NA	Y	NA
924843	924844	M28_Spy0614	M28_Spy0615		rpmA	TRUE	0.960	28.000	0.203	NA	Y	NA
924844	924845	M28_Spy0615	M28_Spy0616	rpmA		FALSE	0.020	358.000	0.000	1.000	N	NA
924845	924846	M28_Spy0616	M28_Spy0617		lsp	TRUE	0.935	-3.000	0.119	1.000	N	NA
924846	924847	M28_Spy0617	M28_Spy0618	lsp		TRUE	0.909	-10.000	0.082	1.000	N	NA
924847	924848	M28_Spy0618	M28_Spy0619		pyrR	FALSE	0.045	395.000	0.048	1.000	N	NA
924848	924849	M28_Spy0619	M28_Spy0620	pyrR	pyrP	TRUE	0.976	16.000	0.140	1.000	Y	NA
924849	924850	M28_Spy0620	M28_Spy0621	pyrP	pyrB	TRUE	0.980	7.000	0.064	1.000	Y	NA
924850	924851	M28_Spy0621	M28_Spy0622	pyrB	carA	TRUE	0.864	44.000	0.014	1.000	Y	NA
924851	924852	M28_Spy0622	M28_Spy0623	carA		TRUE	0.723	-28.000	0.000	NA		NA
924852	924853	M28_Spy0623	M28_Spy0624		carB	FALSE	0.188	77.000	0.000	NA		NA
924853	924854	M28_Spy0624	M28_Spy0625	carB		FALSE	0.120	207.000	0.017	1.000	N	NA
924854	924855	M28_Spy0625	M28_Spy0626			TRUE	0.994	0.000	0.923	1.000	N	NA
924855	924856	M28_Spy0626	M28_Spy0627			TRUE	0.997	12.000	0.923	1.000	Y	NA
924856	924857	M28_Spy0627	M28_Spy0628			FALSE	0.050	212.000	0.000	1.000	N	NA
924857	924858	M28_Spy0628	M28_Spy0629		rpsP	FALSE	0.164	127.000	0.003	1.000	N	NA
924858	924859	M28_Spy0629	M28_Spy0630	rpsP		TRUE	0.978	10.000	0.385	1.000		NA
924859	924860	M28_Spy0630	M28_Spy0631			TRUE	0.831	9.000	0.000	NA		NA
924860	924861	M28_Spy0631	M28_Spy0632			FALSE	0.014	816.000	0.000	NA		NA
924861	924862	M28_Spy0632	M28_Spy0633			TRUE	0.928	20.000	0.200	1.000		NA
924864	924865	M28_Spy0635	M28_Spy0636		rimM	FALSE	0.049	215.000	0.000	1.000	N	NA
924865	924866	M28_Spy0636	M28_Spy0637	rimM	trmD	TRUE	0.995	-10.000	0.672	1.000	Y	NA
924866	924867	M28_Spy0637	M28_Spy0638	trmD	trxB	TRUE	0.895	0.000	0.007	1.000	N	NA
924867	924868	M28_Spy0638	M28_Spy0639	trxB		FALSE	0.207	179.000	0.059	NA		NA
924868	924869	M28_Spy0639	M28_Spy0640		apbA	TRUE	0.969	13.000	0.333	NA		NA
924869	924870	M28_Spy0640	M28_Spy0641	apbA	fruR	FALSE	0.036	256.000	0.000	1.000	N	NA
924870	924871	M28_Spy0641	M28_Spy0642	fruR	fruB	TRUE	0.997	-3.000	0.721	1.000	Y	NA
924871	924872	M28_Spy0642	M28_Spy0643	fruB	fruA	TRUE	0.997	-3.000	0.816	1.000	Y	NA
924872	924873	M28_Spy0643	M28_Spy0644	fruA	mur1.1	FALSE	0.247	93.000	0.022	1.000	N	NA
924873	924874	M28_Spy0644	M28_Spy0645	mur1.1	mur1.2	TRUE	0.909	152.000	0.333	0.003	Y	NA
924875	924876	M28_Spy0647	M28_Spy0648			TRUE	0.739	-25.000	0.000	NA		NA
924876	924877	M28_Spy0648	M28_Spy0649		mac	FALSE	0.092	176.000	0.000	NA		NA
924878	924879	M28_Spy0650	M28_Spy0651			FALSE	0.061	228.000	0.000	1.000		NA
924879	924880	M28_Spy0651	M28_Spy0652			TRUE	0.951	0.000	0.139	NA		NA
924880	924881	M28_Spy0652	M28_Spy0653		papS	FALSE	0.216	125.000	0.009	NA		NA
924881	924882	M28_Spy0653	M28_Spy0654	papS		TRUE	0.934	-3.000	0.056	1.000		NA
924882	924883	M28_Spy0654	M28_Spy0655			FALSE	0.047	257.000	0.000	NA		NA
924883	924884	M28_Spy0655	M28_Spy0656			TRUE	0.831	9.000	0.000	NA		NA
924884	924885	M28_Spy0656	M28_Spy0657		fms	FALSE	0.048	256.000	0.000	NA		NA
924887	924888	M28_Spy0659	M28_Spy0660			TRUE	0.993	3.000	0.800	1.000		NA
924888	924889	M28_Spy0660	M28_Spy0661			TRUE	0.992	-18.000	0.533	1.000	Y	NA
924889	924890	M28_Spy0661	M28_Spy0662		mvaK1	FALSE	0.026	293.000	0.000	1.000	N	NA
924890	924891	M28_Spy0662	M28_Spy0663	mvaK1	mvaD	TRUE	0.996	-18.000	0.281	0.003	Y	NA
924891	924892	M28_Spy0663	M28_Spy0664	mvaD	mvaK2	TRUE	0.993	-55.000	0.312	0.005	Y	NA
924892	924893	M28_Spy0664	M28_Spy0665	mvaK2		TRUE	0.827	-103.000	0.097	1.000	N	NA
924894	924895	M28_Spy0666	M28_Spy0667		mvaS.1	TRUE	0.981	-13.000	0.183	1.000	Y	NA
924896	924897	M28_Spy0668	M28_Spy0669	thyA	dyr	TRUE	0.556	80.000	0.295	1.000	N	NA
924897	924898	M28_Spy0669	M28_Spy0670	dyr		TRUE	0.863	20.000	0.030	NA		NA
924898	924899	M28_Spy0670	M28_Spy0671		clpX	FALSE	0.227	130.000	0.012	NA		NA
924899	924900	M28_Spy0671	M28_Spy0672	clpX		TRUE	0.924	10.000	0.043	1.000		NA
924900	924901	M28_Spy0672	M28_Spy0673			FALSE	0.185	148.000	0.004	NA		NA
924903	924904	M28_Spy0675	M28_Spy0676	rpiA	deoB	TRUE	0.665	77.000	0.018	1.000	Y	NA
924904	924905	M28_Spy0676	M28_Spy0677	deoB	arsC	TRUE	0.927	10.000	0.108	1.000	N	NA
924905	924906	M28_Spy0677	M28_Spy0678	arsC	punA	TRUE	0.902	-16.000	0.108	1.000	N	NA
924906	924907	M28_Spy0678	M28_Spy0679	punA	deoD2	FALSE	0.394	528.000	0.040	0.001	Y	NA
924907	924908	M28_Spy0679	M28_Spy0680	deoD2	cpsX	TRUE	0.920	-13.000	0.107	NA		NA
924910	924911	M28_Spy0682	M28_Spy0683		pyrF	FALSE	0.041	277.000	0.000	NA		NA
924911	924912	M28_Spy0683	M28_Spy0684	pyrF	pyrE	TRUE	0.829	58.000	0.133	1.000	Y	NA
924912	924913	M28_Spy0684	M28_Spy0685	pyrE	amiC	FALSE	0.057	197.000	0.000	1.000	N	NA
924913	924914	M28_Spy0685	M28_Spy0686	amiC		TRUE	0.424	82.000	0.182	1.000	N	NA
924914	924915	M28_Spy0686	M28_Spy0687			TRUE	0.977	29.000	0.125	0.039	Y	NA
924915	924916	M28_Spy0687	M28_Spy0688		ung	FALSE	0.215	133.000	0.025	1.000	N	NA
924916	924917	M28_Spy0688	M28_Spy0689	ung	pyrC	FALSE	0.185	124.000	0.009	1.000	N	NA
924919	924920	M28_Spy0691	M28_Spy0692	parE	parC	TRUE	0.963	85.000	0.552	0.003	Y	NA
924920	924921	M28_Spy0692	M28_Spy0693	parC	bcaT	FALSE	0.362	78.000	0.086	1.000	N	NA
924921	924922	M28_Spy0693	M28_Spy0694	bcaT		TRUE	0.541	61.000	0.095	NA		NA
924922	924923	M28_Spy0694	M28_SpyT0046			FALSE	0.279	61.000	0.000	NA		NA
924923	924924	M28_SpyT0046	M28_SpyT0047			FALSE	0.350	51.000	0.000	NA		NA
924924	924925	M28_SpyT0047	M28_Spy0695			FALSE	0.124	124.000	0.000	NA		NA
924925	924926	M28_Spy0695	M28_SpyT0048			FALSE	0.125	113.000	0.000	NA		NA
924928	924929	M28_Spy0697	M28_Spy0698			FALSE	0.214	71.000	0.000	NA		NA
924929	924930	M28_Spy0698	M28_Spy0699			FALSE	0.378	49.000	0.000	NA		NA
924930	924931	M28_Spy0699	M28_Spy0700			TRUE	0.829	-133.000	0.056	1.000		NA
924933	924934	M28_Spy0702	M28_Spy0703	miaA	hflX	TRUE	0.482	61.000	0.027	1.000		NA
924934	924935	M28_Spy0703	M28_Spy0704	hflX		TRUE	0.876	-19.000	0.014	1.000		NA
924935	924936	M28_Spy0704	M28_Spy0705		elaC	TRUE	0.895	15.000	0.022	1.000		NA
924936	924937	M28_Spy0705	M28_Spy0706	elaC		TRUE	0.943	0.000	0.074	1.000		NA
924937	924938	M28_Spy0706	M28_Spy0707		recJ	TRUE	0.922	-3.000	0.016	1.000		NA
924938	924939	M28_Spy0707	M28_Spy0708	recJ	apt	FALSE	0.267	150.000	0.128	1.000	N	NA
924939	924940	M28_Spy0708	M28_Spy0709	apt	dnaD	FALSE	0.220	81.000	0.005	NA	N	NA
924940	924941	M28_Spy0709	M28_Spy0710	dnaD	nth	TRUE	0.975	-3.000	0.007	NA	Y	NA
924941	924942	M28_Spy0710	M28_Spy0711	nth		FALSE	0.327	72.000	0.006	NA		NA
924942	924943	M28_Spy0711	M28_Spy0712			TRUE	0.956	-16.000	0.283	NA		NA
924943	924944	M28_Spy0712	M28_Spy0713			TRUE	0.681	40.000	0.021	NA		NA
924944	924945	M28_Spy0713	M28_Spy0714		cpsFO	TRUE	0.476	59.000	0.059	1.000	N	NA
924945	924946	M28_Spy0714	M28_Spy0715	cpsFO	cpsFP	TRUE	0.986	0.000	0.149	1.000	Y	NA
924946	924947	M28_Spy0715	M28_Spy0716	cpsFP	cpsFQ	TRUE	0.579	244.000	0.350	1.000	Y	NA
924947	924948	M28_Spy0716	M28_Spy0717	cpsFQ		FALSE	0.046	221.000	0.000	1.000	N	NA
924948	924949	M28_Spy0717	M28_Spy0718			TRUE	0.549	58.000	0.074	NA		NA
924949	924950	M28_Spy0718	M28_Spy0719			TRUE	0.950	-28.000	0.324	NA		NA
924952	924953	M28_Spy0721	M28_Spy0722			FALSE	0.087	182.000	0.000	NA		NA
924953	924954	M28_Spy0722	M28_Spy0723			TRUE	0.681	-49.000	0.000	NA		NA
924954	924955	M28_Spy0723	M28_Spy0724			FALSE	0.100	164.000	0.000	NA		NA
924955	924956	M28_Spy0724	M28_Spy0725			TRUE	0.994	-3.000	0.895	1.000		NA
924956	924957	M28_Spy0725	M28_Spy0726			FALSE	0.154	204.000	0.026	1.000		NA
924957	924958	M28_Spy0726	M28_Spy0727		estA	FALSE	0.334	133.000	0.143	NA		NA
924958	924959	M28_Spy0727	M28_Spy0728	estA		TRUE	0.841	30.000	0.150	NA		NA
924959	924960	M28_Spy0728	M28_Spy0729			TRUE	0.625	46.000	0.029	NA		NA
924960	924961	M28_Spy0729	M28_Spy0730		acoA	FALSE	0.044	274.000	0.000	1.000		NA
924961	924962	M28_Spy0730	M28_Spy0731	acoA	acoB	TRUE	0.991	56.000	0.769	0.001	Y	NA
924962	924963	M28_Spy0731	M28_Spy0732	acoB	acoC	TRUE	0.689	185.000	0.077	0.045	Y	NA
924966	924967	M28_Spy0735	M28_Spy0736		hylA	FALSE	0.020	430.000	0.000	NA		NA
924969	924970	M28_Spy0738	M28_Spy0739			TRUE	0.993	0.000	0.796	1.000		NA
924971	924972	M28_Spy0740	M28_Spy0741			TRUE	0.986	-3.000	0.502	NA		NA
924972	924973	M28_Spy0741	M28_Spy0742		femD	TRUE	0.636	54.000	0.150	NA		NA
924973	924974	M28_Spy0742	M28_Spy0743	femD		FALSE	0.194	124.000	0.003	NA		NA
924974	924975	M28_Spy0743	M28_Spy0744		hemN	TRUE	0.848	-33.000	0.021	NA		NA
924975	924976	M28_Spy0744	M28_Spy0745	hemN		TRUE	0.915	10.000	0.060	1.000	N	NA
924976	924977	M28_Spy0745	M28_Spy0746			TRUE	0.924	0.000	0.055	1.000	N	NA
924977	924978	M28_Spy0746	M28_Spy0747			TRUE	0.966	-12.000	0.330	NA		NA
924978	924979	M28_Spy0747	M28_Spy0748			FALSE	0.019	445.000	0.000	NA		NA
924979	924980	M28_Spy0748	M28_Spy0749			TRUE	0.988	0.000	0.546	NA		NA
924980	924981	M28_Spy0749	M28_Spy0750			TRUE	0.994	-3.000	0.876	NA		NA
924981	924982	M28_Spy0750	M28_Spy0751			TRUE	0.919	-76.000	0.253	NA		NA
924982	924983	M28_Spy0751	M28_Spy0752			FALSE	0.016	542.000	0.000	NA		NA
11524203	924978		M28_Spy0747			FALSE	NA	6513.000	0.000	NA		NA
11666566	924978		M28_Spy0747			FALSE	NA	6513.000	0.000	NA		NA
11808958	924978		M28_Spy0747			FALSE	NA	6513.000	0.000	NA		NA
11524204	924978		M28_Spy0747			FALSE	NA	6549.000	0.000	NA		NA
11666567	924978		M28_Spy0747			FALSE	NA	6549.000	0.000	NA		NA
11808959	924978		M28_Spy0747			FALSE	NA	6549.000	0.000	NA		NA
11524205	924978		M28_Spy0747			FALSE	NA	6579.000	0.000	NA		NA
11666568	924978		M28_Spy0747			FALSE	NA	6579.000	0.000	NA		NA
11808960	924978		M28_Spy0747			FALSE	NA	6579.000	0.000	NA		NA
11524206	924978		M28_Spy0747			FALSE	NA	6615.000	0.000	NA		NA
11666569	924978		M28_Spy0747			FALSE	NA	6615.000	0.000	NA		NA
11808961	924978		M28_Spy0747			FALSE	NA	6615.000	0.000	NA		NA
11524207	924978		M28_Spy0747			FALSE	NA	6645.000	0.000	NA		NA
11666570	924978		M28_Spy0747			FALSE	NA	6645.000	0.000	NA		NA
11808962	924978		M28_Spy0747			FALSE	NA	6645.000	0.000	NA		NA
11524208	924978		M28_Spy0747			FALSE	NA	6681.000	0.000	NA		NA
11666571	924978		M28_Spy0747			FALSE	NA	6681.000	0.000	NA		NA
11808963	924978		M28_Spy0747			FALSE	NA	6681.000	0.000	NA		NA
11524209	924978		M28_Spy0747			FALSE	NA	6711.000	0.000	NA		NA
11666572	924978		M28_Spy0747			FALSE	NA	6711.000	0.000	NA		NA
11808964	924978		M28_Spy0747			FALSE	NA	6711.000	0.000	NA		NA
11524210	924978		M28_Spy0747			FALSE	NA	6747.000	0.000	NA		NA
11666573	924978		M28_Spy0747			FALSE	NA	6747.000	0.000	NA		NA
11808965	924978		M28_Spy0747			FALSE	NA	6747.000	0.000	NA		NA
11524211	924978		M28_Spy0747			FALSE	NA	6777.000	0.000	NA		NA
11666574	924978		M28_Spy0747			FALSE	NA	6777.000	0.000	NA		NA
11808966	924978		M28_Spy0747			FALSE	NA	6777.000	0.000	NA		NA
924983	924984	M28_Spy0752	M28_Spy0753		lepA	FALSE	0.073	169.000	0.000	1.000	N	NA
924984	924985	M28_Spy0753	M28_Spy0754	lepA		FALSE	0.038	288.000	0.000	1.000		NA
924985	924986	M28_Spy0754	M28_Spy0755		msrB	FALSE	0.086	186.000	0.000	1.000		NA
924986	924987	M28_Spy0755	M28_Spy0756	msrB		FALSE	0.130	130.000	0.000	1.000		NA
924987	924988	M28_Spy0756	M28_Spy0757			FALSE	0.072	207.000	0.000	1.000		NA
924988	924989	M28_Spy0757	M28_Spy0758		ptsB	TRUE	0.998	19.000	0.786	0.020	Y	NA
924989	924990	M28_Spy0758	M28_Spy0759	ptsB	ptsC	TRUE	0.998	17.000	0.778	0.023	Y	NA
924990	924991	M28_Spy0759	M28_Spy0760	ptsC	ptsD	TRUE	0.999	-3.000	0.778	0.023	Y	NA
924991	924992	M28_Spy0760	M28_Spy0761	ptsD		TRUE	0.616	136.000	0.222	0.058	N	NA
924992	924993	M28_Spy0761	M28_Spy0762			TRUE	0.998	4.000	0.500	0.013	Y	NA
924993	924994	M28_Spy0762	M28_Spy0763			TRUE	0.985	-6.000	0.571	1.000	N	NA
924994	924995	M28_Spy0763	M28_Spy0764		gabD	FALSE	0.096	113.000	0.000	1.000	N	NA
924995	924996	M28_Spy0764	M28_Spy0765	gabD	uvrC	FALSE	0.105	102.000	0.000	1.000	N	NA
924996	924997	M28_Spy0765	M28_Spy0766	uvrC		FALSE	0.115	185.000	0.004	1.000	N	NA
924997	924998	M28_Spy0766	M28_Spy0767			FALSE	0.342	125.000	0.179	1.000	N	NA
925000	925001	M28_Spy0769	M28_Spy0770	rplJ	rplL	TRUE	0.986	65.000	0.884	0.027	Y	NA
925001	925002	M28_Spy0770	M28_Spy0771	rplL		FALSE	0.027	356.000	0.000	NA		NA
925002	925003	M28_Spy0771	M28_Spy0772			TRUE	0.823	-6.000	0.000	NA		NA
925003	925004	M28_Spy0772	M28_Spy0773			TRUE	0.757	-21.000	0.000	NA		NA
925004	925005	M28_Spy0773	M28_Spy0774			FALSE	0.364	50.000	0.000	NA		NA
925005	925006	M28_Spy0774	M28_Spy0775			FALSE	0.297	58.000	0.000	NA		NA
925006	925007	M28_Spy0775	M28_Spy0776			TRUE	0.447	43.000	0.000	NA		NA
925007	925008	M28_Spy0776	M28_Spy0777			FALSE	0.045	265.000	0.000	NA		NA
925008	925009	M28_Spy0777	M28_Spy0778		srtI	FALSE	0.227	69.000	0.000	NA		NA
925009	925010	M28_Spy0778	M28_Spy0779	srtI	srtR	FALSE	0.114	151.000	0.000	NA		NA
925010	925011	M28_Spy0779	M28_Spy0780	srtR	srtK	TRUE	0.998	-22.000	0.741	0.013	Y	NA
925011	925012	M28_Spy0780	M28_Spy0781	srtK	srtA	FALSE	0.110	157.000	0.000	1.000		NA
925012	925013	M28_Spy0781	M28_Spy0782	srtA	srtT	FALSE	0.129	115.000	0.000	1.000		NA
925013	925014	M28_Spy0782	M28_Spy0783	srtT		TRUE	0.732	-28.000	0.000	1.000		NA
925014	925015	M28_Spy0783	M28_Spy0784			TRUE	0.742	19.000	0.000	NA		NA
925015	925016	M28_Spy0784	M28_Spy0785		srtF	TRUE	0.677	-51.000	0.000	NA		NA
925016	925017	M28_Spy0785	M28_Spy0786	srtF	srtE	TRUE	0.837	6.000	0.000	NA		NA
925017	925018	M28_Spy0786	M28_Spy0787	srtE	srtG	TRUE	0.984	3.000	0.490	NA		NA
925018	925019	M28_Spy0787	M28_Spy0788	srtG		FALSE	0.080	191.000	0.000	NA		NA
925021	925022	M28_Spy0790	M28_Spy0791			TRUE	0.692	22.000	0.000	NA		NA
925022	925023	M28_Spy0791	M28_Spy0792			FALSE	0.200	73.000	0.000	NA		NA
925023	925024	M28_Spy0792	M28_Spy0793			TRUE	0.843	31.000	0.000	0.068		NA
925024	925025	M28_Spy0793	M28_Spy0794		dacA1	FALSE	0.123	143.000	0.000	1.000		NA
925027	925028	M28_Spy0796	M28_Spy0797		folC.1	TRUE	0.823	-6.000	0.000	NA		NA
925028	925029	M28_Spy0797	M28_Spy0798	folC.1	folE	TRUE	0.978	11.000	0.057	1.000	Y	NA
925029	925030	M28_Spy0798	M28_Spy0799	folE	folP	TRUE	0.981	9.000	0.073	1.000	Y	NA
925030	925031	M28_Spy0799	M28_Spy0800	folP	folQ	TRUE	0.982	7.000	0.094	1.000	Y	NA
925031	925032	M28_Spy0800	M28_Spy0801	folQ	folK	TRUE	0.984	-3.000	0.142	1.000	Y	NA
925032	925033	M28_Spy0801	M28_Spy0802	folK	murB	FALSE	0.175	150.000	0.010	1.000	N	NA
925033	925034	M28_Spy0802	M28_Spy0803	murB	potA	TRUE	0.595	46.000	0.041	1.000	N	NA
925034	925035	M28_Spy0803	M28_Spy0804	potA	potB	TRUE	0.998	-37.000	0.928	0.038	Y	NA
925035	925036	M28_Spy0804	M28_Spy0805	potB	potC	TRUE	0.998	-3.000	0.492	0.038	Y	NA
925036	925037	M28_Spy0805	M28_Spy0806	potC		TRUE	0.995	-7.000	0.253	0.038	Y	NA
925038	925039	M28_Spy0807	M28_Spy0808	dpiA	dpiB	TRUE	0.976	-19.000	0.154	1.000	Y	NA
925040	925041	M28_Spy0809	M28_Spy0810	malP		TRUE	0.975	32.000	0.432	1.000	Y	NA
925043	925044	M28_Spy0812	M28_Spy0813			FALSE	0.124	142.000	0.000	1.000		NA
925044	925045	M28_Spy0813	M28_Spy0814			FALSE	0.212	163.000	0.071	1.000	N	NA
925045	925046	M28_Spy0814	M28_Spy0815			FALSE	0.247	159.000	0.071	NA		NA
925046	925047	M28_Spy0815	M28_Spy0816		radC	TRUE	0.605	49.000	0.046	NA		NA
925048	925049	M28_Spy0817	M28_Spy0818			TRUE	0.990	10.000	0.714	1.000		NA
925049	925050	M28_Spy0818	M28_Spy0819			FALSE	0.135	252.000	0.083	NA		NA
925050	925051	M28_Spy0819	M28_Spy0820		nifS2	TRUE	0.941	-10.000	0.166	NA		NA
925051	925052	M28_Spy0820	M28_Spy0821	nifS2		TRUE	0.982	-3.000	0.089	1.000	Y	NA
925052	925053	M28_Spy0821	M28_Spy0822			FALSE	0.336	140.000	0.145	1.000		NA
925054	925055	M28_Spy0823	M28_Spy0824			TRUE	0.983	-28.000	0.725	1.000		NA
925055	925056	M28_Spy0824	M28_Spy0825			TRUE	0.943	-3.000	0.150	1.000	N	NA
925056	925057	M28_Spy0825	M28_Spy0826		pta	TRUE	0.926	4.000	0.067	1.000	N	NA
925057	925058	M28_Spy0826	M28_Spy0827	pta		TRUE	0.517	109.000	0.031	0.044		NA
925060	925061	M28_Spy0829	M28_Spy0830	proV		TRUE	0.946	-43.000	0.382	1.000	N	NA
925061	925062	M28_Spy0830	M28_Spy0831		guaC	FALSE	0.035	257.000	0.000	1.000	N	NA
925062	925063	M28_Spy0831	M28_Spy0832	guaC	xpt	FALSE	0.210	305.000	0.009	1.000	Y	NA
925063	925064	M28_Spy0832	M28_Spy0833	xpt		TRUE	0.981	0.000	0.046	1.000	Y	NA
925065	925066	M28_Spy0834	M28_Spy0835	apbE		TRUE	0.695	53.000	0.189	1.000		NA
925067	925068	M28_Spy0836	M28_Spy0837	tdk2	prfA	TRUE	0.724	35.000	0.062	1.000	N	NA
925068	925069	M28_Spy0837	M28_Spy0838	prfA	hemK	TRUE	0.983	0.000	0.084	1.000	Y	NA
925069	925070	M28_Spy0838	M28_Spy0839	hemK		TRUE	0.950	-46.000	0.029	NA	Y	NA
925070	925071	M28_Spy0839	M28_Spy0840			TRUE	0.865	18.000	0.012	NA		NA
925071	925072	M28_Spy0840	M28_Spy0841		glyA	TRUE	0.903	-16.000	0.056	1.000		NA
925072	925073	M28_Spy0841	M28_Spy0842	glyA		TRUE	0.834	7.000	0.000	NA		NA
925073	925074	M28_Spy0842	M28_Spy0843			TRUE	0.849	1.000	0.000	NA		NA
925074	925075	M28_Spy0843	M28_Spy0844			TRUE	0.921	10.000	0.035	NA		NA
925075	925076	M28_Spy0844	M28_Spy0845			TRUE	0.999	3.000	0.895	0.007	Y	NA
925076	925077	M28_Spy0845	M28_Spy0846		nox	FALSE	0.057	241.000	0.000	1.000		NA
925079	925080	M28_Spy0848	M28_Spy0849	gyrA		TRUE	0.816	20.000	0.013	NA	N	NA
925080	925081	M28_Spy0849	M28_Spy0850			FALSE	0.295	80.000	0.039	NA	N	NA
925081	925082	M28_Spy0850	M28_Spy0851			FALSE	0.018	487.000	0.000	NA		NA
925082	925083	M28_Spy0851	M28_Spy0852			TRUE	0.681	-49.000	0.000	NA		NA
925084	925085	M28_Spy0853	M28_Spy0854			FALSE	0.329	117.000	0.135	1.000		NA
925085	925086	M28_Spy0854	M28_Spy0855			TRUE	0.951	-3.000	0.146	1.000		NA
925087	925088	M28_Spy0856	M28_Spy0857			TRUE	0.554	65.000	0.148	1.000		NA
925088	925089	M28_Spy0857	M28_Spy0858		smf	TRUE	0.755	65.000	0.037	1.000	Y	NA
925089	925090	M28_Spy0858	M28_Spy0859	smf		TRUE	0.725	107.000	0.238	1.000	Y	NA
925091	925092	M28_Spy0860	M28_Spy0861			TRUE	0.834	7.000	0.000	NA		NA
925093	925094	M28_Spy0862	M28_Spy0863		ddh	TRUE	0.944	12.000	0.158	NA		NA
925094	925095	M28_Spy0863	M28_Spy0864	ddh	satD	FALSE	0.289	105.000	0.056	NA		NA
925095	925096	M28_Spy0864	M28_Spy0865	satD	satE	TRUE	0.963	-7.000	0.250	NA		NA
925096	925097	M28_Spy0865	M28_Spy0866	satE	gid	FALSE	0.237	98.000	0.008	NA		NA
925097	925098	M28_Spy0866	M28_Spy0867	gid	oadA2	FALSE	0.154	153.000	0.005	1.000	N	NA
925098	925099	M28_Spy0867	M28_Spy0868	oadA2		TRUE	0.824	43.000	0.250	NA		NA
925099	925100	M28_Spy0868	M28_Spy0869			TRUE	0.986	0.000	0.500	NA		NA
925100	925101	M28_Spy0869	M28_Spy0870			TRUE	0.916	10.000	0.062	1.000	N	NA
925102	925103	M28_Spy0871	M28_Spy0872		citG	TRUE	0.987	-7.000	0.700	1.000	N	NA
925103	925104	M28_Spy0872	M28_Spy0873	citG		TRUE	0.490	158.000	0.400	1.000	N	NA
925105	925106	M28_Spy0874	M28_Spy0875			TRUE	0.579	54.000	0.077	NA		NA
925106	925107	M28_Spy0875	M28_Spy0876		oadB	TRUE	0.900	45.000	0.103	0.004	N	NA
925107	925108	M28_Spy0876	M28_Spy0877	oadB		TRUE	0.988	18.000	0.273	0.002		NA
925108	925109	M28_Spy0877	M28_Spy0878		citD	TRUE	0.836	36.000	0.192	1.000		NA
925109	925110	M28_Spy0878	M28_Spy0879	citD	citE	TRUE	0.989	-12.000	0.284	0.002	N	NA
925110	925111	M28_Spy0879	M28_Spy0880	citE	citF	TRUE	0.988	3.000	0.119	0.001	N	NA
925111	925112	M28_Spy0880	M28_Spy0881	citF	citX	TRUE	0.852	-70.000	0.138	1.000	N	NA
925112	925113	M28_Spy0881	M28_Spy0882	citX	oadA1	TRUE	0.936	-3.000	0.123	1.000	N	NA
925114	925115	M28_Spy0883	M28_Spy0884	citC		FALSE	0.158	89.000	0.000	1.000		NA
925115	925116	M28_Spy0884	M28_Spy0885		xerD	FALSE	0.016	699.000	0.000	1.000		NA
925118	925119	M28_Spy0887	M28_Spy0888	ffh	ylxM	TRUE	0.949	9.000	0.151	1.000		NA
925119	925120	M28_Spy0888	M28_Spy0889	ylxM		TRUE	0.580	89.000	0.032	0.041		NA
925120	925121	M28_Spy0889	M28_Spy0890			TRUE	0.541	56.000	0.057	NA		NA
925123	925124	M28_Spy0892	M28_Spy0893			FALSE	0.026	367.000	0.000	1.000		NA
925124	925125	M28_Spy0893	M28_Spy0894		pdxK	FALSE	0.286	98.000	0.040	NA		NA
925125	925126	M28_Spy0894	M28_Spy0895	pdxK		TRUE	0.914	-22.000	0.142	NA		NA
925128	925129	M28_Spy0897	M28_Spy0898	rnhB		FALSE	0.032	322.000	0.000	1.000		NA
925129	925130	M28_Spy0898	M28_Spy0899		fhs.1	FALSE	0.326	85.000	0.094	1.000	N	NA
925130	925131	M28_Spy0899	M28_Spy0900	fhs.1	lplA	FALSE	0.369	128.000	0.200	1.000	N	NA
925131	925132	M28_Spy0900	M28_Spy0901	lplA		TRUE	0.768	47.000	0.250	1.000	N	NA
925132	925133	M28_Spy0901	M28_Spy0902			TRUE	0.967	-7.000	0.286	NA		NA
925133	925134	M28_Spy0902	M28_Spy0903			TRUE	0.933	-7.000	0.107	NA		NA
925134	925135	M28_Spy0903	M28_Spy0904			TRUE	0.920	42.000	0.571	NA	N	NA
925135	925136	M28_Spy0904	M28_Spy0905			TRUE	0.982	-3.000	0.100	NA	Y	NA
925136	925137	M28_Spy0905	M28_Spy0906			TRUE	0.907	-3.000	0.019	1.000	N	NA
925138	925139	M28_Spy0907	M28_Spy0908	dpfB	dfp	TRUE	0.883	-7.000	0.002	1.000		NA
925139	925140	M28_Spy0908	M28_Spy0909	dfp		TRUE	0.615	46.000	0.019	NA		NA
925140	925141	M28_Spy0909	M28_Spy0910		pgmA	FALSE	0.238	175.000	0.098	NA		NA
925142	925143	M28_Spy0911	M28_Spy0912			TRUE	0.995	-10.000	0.720	0.037		NA
925143	925144	M28_Spy0912	M28_Spy0913			TRUE	0.963	-34.000	0.438	1.000		NA
925144	925145	M28_Spy0913	M28_Spy0914			FALSE	0.261	121.000	0.036	1.000		NA
925145	925146	M28_Spy0914	M28_Spy0915		cdd	TRUE	0.544	94.000	0.300	1.000		NA
925146	925147	M28_Spy0915	M28_Spy0916	cdd		FALSE	0.011	651.000	0.000	1.000	N	NA
925148	925149	M28_Spy0917	M28_Spy0918	coaA	rpsT	FALSE	0.339	69.000	0.014	1.000	N	NA
925150	925151	M28_Spy0919	M28_Spy0920	ciaH	ciaR	TRUE	0.995	-7.000	0.606	1.000	Y	NA
925151	925152	M28_Spy0920	M28_Spy0921	ciaR	pepN	FALSE	0.061	347.000	0.061	1.000	N	NA
925152	925153	M28_Spy0921	M28_Spy0922	pepN		TRUE	0.840	-3.000	0.000	NA		NA
925153	925154	M28_Spy0922	M28_Spy0923		phoU	TRUE	0.668	-61.000	0.000	NA		NA
925154	925155	M28_Spy0923	M28_Spy0924	phoU	pstB	TRUE	0.896	68.000	0.413	NA	Y	NA
925155	925156	M28_Spy0924	M28_Spy0925	pstB	pstB2	TRUE	0.999	10.000	0.542	0.001	Y	NA
925156	925157	M28_Spy0925	M28_Spy0926	pstB2	pstA	TRUE	0.998	16.000	0.490	0.002	Y	NA
925157	925158	M28_Spy0926	M28_Spy0927	pstA	pstC	TRUE	0.999	-10.000	0.907	0.002	Y	NA
925158	925159	M28_Spy0927	M28_Spy0928	pstC	pstS	TRUE	0.720	97.000	0.206	1.000	Y	NA
925159	925160	M28_Spy0928	M28_Spy0929	pstS		TRUE	0.454	139.000	0.303	NA	N	NA
925160	925161	M28_Spy0929	M28_Spy0930			TRUE	0.962	3.000	0.229	NA	N	NA
925161	925162	M28_Spy0930	M28_Spy0931			TRUE	0.952	-31.000	0.337	NA		NA
925162	925163	M28_Spy0931	M28_Spy0932			TRUE	0.943	-10.000	0.169	NA		NA
925163	925164	M28_Spy0932	M28_Spy0933		mreA	TRUE	0.596	43.000	0.017	1.000	N	NA
925164	925165	M28_Spy0933	M28_Spy0934	mreA	truB	TRUE	0.904	29.000	0.308	1.000	N	NA
925165	925166	M28_Spy0934	M28_Spy0935	truB		FALSE	0.233	116.000	0.014	NA		NA
925166	925167	M28_Spy0935	M28_Spy0936			FALSE	0.293	97.000	0.045	NA		NA
925167	925168	M28_Spy0936	M28_Spy0937			TRUE	0.920	11.000	0.045	NA		NA
925168	925169	M28_Spy0937	M28_Spy0938			FALSE	0.368	92.000	0.121	1.000		NA
925169	925170	M28_Spy0938	M28_Spy0939			TRUE	0.991	15.000	0.438	1.000	Y	NA
925172	925173	M28_Spy0941	M28_Spy0942			TRUE	0.845	3.000	0.000	NA		NA
925173	925174	M28_Spy0942	M28_Spy0943			FALSE	0.384	163.000	0.238	NA		NA
925174	925175	M28_Spy0943	M28_Spy0944			TRUE	0.988	8.000	0.600	NA		NA
925175	925176	M28_Spy0944	M28_Spy0945			TRUE	0.936	41.000	0.600	NA		NA
925176	925177	M28_Spy0945	M28_Spy0946			TRUE	0.915	13.000	0.060	NA		NA
925177	925178	M28_Spy0946	M28_Spy0947			TRUE	0.942	11.000	0.143	NA		NA
925178	925179	M28_Spy0947	M28_Spy0948			TRUE	0.897	37.000	0.357	NA		NA
925179	925180	M28_Spy0948	M28_Spy0949		pcrA	FALSE	0.027	363.000	0.000	1.000		NA
925180	925181	M28_Spy0949	M28_Spy0951	pcrA		FALSE	0.025	368.000	0.000	NA		NA
925182	925183	M28_Spy0950	M28_Spy0952			TRUE	0.471	120.000	0.060	0.074	N	NA
925184	925185	M28_Spy0953	M28_Spy0954	cfa		FALSE	0.024	370.000	0.000	NA		NA
925185	925186	M28_Spy0954	M28_Spy0955			TRUE	0.977	16.000	0.154	1.000	Y	NA
925186	925187	M28_Spy0955	M28_Spy0956			TRUE	0.982	10.000	0.130	1.000	Y	NA
925187	925188	M28_Spy0956	M28_Spy0957			FALSE	0.220	107.000	0.018	1.000	N	NA
925188	925189	M28_Spy0957	M28_Spy0958		glmS	FALSE	0.114	196.000	0.008	1.000	N	NA
925189	925190	M28_Spy0958	M28_Spy0959	glmS	sipC	FALSE	0.143	176.000	0.011	1.000	N	NA
925190	925191	M28_Spy0959	M28_Spy0960	sipC	pyk	FALSE	0.140	218.000	0.072	1.000	N	NA
925191	925192	M28_Spy0960	M28_Spy0961	pyk	pfk	TRUE	0.956	63.000	0.261	0.006	Y	NA
925192	925193	M28_Spy0961	M28_Spy0962	pfk	dnaE	FALSE	0.354	80.000	0.098	1.000	N	NA
925194	925195	M28_Spy0963	M28_Spy0964			TRUE	0.980	0.000	0.412	1.000	N	NA
925195	925196	M28_Spy0964	M28_Spy0965			TRUE	0.981	10.000	0.471	NA		NA
925197	925198	M28_Spy0966	M28_Spy0967			FALSE	0.016	591.000	0.000	NA		NA
925199	925200	M28_Spy0968	M28_Spy0969	spd1	speC	FALSE	0.132	111.000	0.000	1.000		NA
925201	925202	M28_Spy0970	M28_Spy0971			FALSE	0.126	112.000	0.000	NA		NA
925202	925203	M28_Spy0971	M28_Spy0972			TRUE	0.990	-3.000	0.667	NA		NA
925203	925204	M28_Spy0972	M28_Spy0973			TRUE	0.821	11.000	0.000	NA		NA
925204	925205	M28_Spy0973	M28_Spy0974			TRUE	0.845	3.000	0.000	NA		NA
925205	925206	M28_Spy0974	M28_Spy0975			TRUE	0.791	14.000	0.000	NA		NA
925206	925207	M28_Spy0975	M28_Spy0976			TRUE	0.821	11.000	0.000	NA		NA
925207	925208	M28_Spy0976	M28_Spy0977			TRUE	0.787	-13.000	0.000	NA		NA
925208	925209	M28_Spy0977	M28_Spy0978			TRUE	0.840	-3.000	0.000	NA		NA
925209	925210	M28_Spy0978	M28_Spy0979			TRUE	0.995	-3.000	1.000	NA		NA
925210	925211	M28_Spy0979	M28_Spy0980			TRUE	0.567	32.000	0.000	NA		NA
925211	925212	M28_Spy0980	M28_Spy0981			TRUE	0.784	15.000	0.000	NA		NA
925212	925213	M28_Spy0981	M28_Spy0982			TRUE	0.819	48.000	0.312	NA		NA
925213	925214	M28_Spy0982	M28_Spy0983			TRUE	0.937	9.000	0.093	NA		NA
925214	925215	M28_Spy0983	M28_Spy0984			TRUE	0.928	10.000	0.062	NA		NA
925215	925216	M28_Spy0984	M28_Spy0985			TRUE	0.990	-3.000	0.667	NA		NA
925216	925217	M28_Spy0985	M28_Spy0986			TRUE	0.928	-19.000	0.167	NA		NA
925217	925218	M28_Spy0986	M28_Spy0987			TRUE	0.972	-3.000	0.286	NA		NA
925218	925219	M28_Spy0987	M28_Spy0988			TRUE	0.982	2.000	0.429	NA		NA
925219	925220	M28_Spy0988	M28_Spy0989			TRUE	0.969	10.000	0.286	NA		NA
925220	925221	M28_Spy0989	M28_Spy0990			TRUE	0.973	3.000	0.286	NA		NA
925221	925222	M28_Spy0990	M28_Spy0991			TRUE	0.933	10.000	0.077	NA		NA
925222	925223	M28_Spy0991	M28_Spy0992			FALSE	0.124	135.000	0.000	NA		NA
925223	925224	M28_Spy0992	M28_Spy0993			TRUE	0.845	3.000	0.000	NA		NA
925224	925225	M28_Spy0993	M28_Spy0994			FALSE	0.220	70.000	0.000	NA		NA
925225	925226	M28_Spy0994	M28_Spy0995			TRUE	0.842	4.000	0.000	NA		NA
925226	925227	M28_Spy0995	M28_Spy0996			TRUE	0.763	-19.000	0.000	NA		NA
925227	925228	M28_Spy0996	M28_Spy0997			TRUE	0.962	12.000	0.250	NA		NA
925228	925229	M28_Spy0997	M28_Spy0998			TRUE	0.952	-28.000	0.000	0.002		NA
925231	925232	M28_Spy1000	M28_Spy1001			FALSE	0.350	51.000	0.000	NA		NA
925232	925233	M28_Spy1001	M28_Spy1002			FALSE	0.032	306.000	0.000	NA		NA
925233	925234	M28_Spy1002	M28_Spy1003			FALSE	0.019	449.000	0.000	NA		NA
925234	925235	M28_Spy1003	M28_Spy1004			TRUE	0.801	-10.000	0.000	NA		NA
925235	925236	M28_Spy1004	M28_Spy1005			TRUE	0.665	-64.000	0.000	NA		NA
925236	925237	M28_Spy1005	M28_Spy1006			TRUE	0.840	-3.000	0.000	NA		NA
925237	925238	M28_Spy1006	M28_Spy1007			TRUE	0.730	-27.000	0.000	NA		NA
925238	925239	M28_Spy1007	M28_Spy1008			TRUE	0.840	-3.000	0.000	NA		NA
925239	925240	M28_Spy1008	M28_Spy1009			TRUE	0.840	-3.000	0.000	NA		NA
925240	925241	M28_Spy1009	M28_Spy1010			TRUE	0.774	-16.000	0.000	NA		NA
925241	925242	M28_Spy1010	M28_Spy1011			TRUE	0.887	20.000	0.080	NA		NA
925242	925243	M28_Spy1011	M28_Spy1012			FALSE	0.047	257.000	0.000	NA		NA
925243	925244	M28_Spy1012	M28_Spy1013			TRUE	0.905	18.000	0.100	NA		NA
925244	925245	M28_Spy1013	M28_Spy1014			TRUE	0.989	5.000	0.600	NA		NA
925245	925246	M28_Spy1014	M28_Spy1015			TRUE	0.709	72.000	0.400	NA		NA
925246	925247	M28_Spy1015	M28_Spy1016			TRUE	0.961	-3.000	0.200	NA		NA
925247	925248	M28_Spy1016	M28_Spy1017			TRUE	0.840	-3.000	0.000	NA		NA
925248	925249	M28_Spy1017	M28_Spy1018			TRUE	0.849	0.000	0.000	NA		NA
925249	925250	M28_Spy1018	M28_Spy1019			FALSE	0.168	81.000	0.000	NA		NA
925250	925251	M28_Spy1019	M28_Spy1020			TRUE	0.840	-3.000	0.000	NA		NA
925251	925252	M28_Spy1020	M28_Spy1021			FALSE	0.187	79.000	0.000	1.000		NA
925253	925254	M28_Spy1022	M28_Spy1023			FALSE	0.115	150.000	0.000	NA		NA
925254	925255	M28_Spy1023	M28_Spy1024			FALSE	0.070	205.000	0.000	NA		NA
925261	925262	M28_Spy1030	M28_Spy1031			TRUE	0.808	13.000	0.000	1.000		NA
925264	925265	M28_Spy1033	M28_Spy1034			FALSE	0.125	132.000	0.000	NA		NA
925265	925266	M28_Spy1034	M28_Spy1035			FALSE	0.123	118.000	0.000	NA		NA
925267	925268	M28_Spy1036	M28_Spy1037	glgP	malM	TRUE	0.985	35.000	0.289	0.021	Y	NA
925268	925269	M28_Spy1037	M28_Spy1038	malM	malR	TRUE	0.637	116.000	0.538	1.000	N	NA
925270	925271	M28_Spy1039	M28_Spy1040	malE	malF	TRUE	0.853	274.000	0.690	0.036	Y	NA
925271	925272	M28_Spy1040	M28_Spy1041	malF	malG	TRUE	0.999	0.000	0.793	0.036	Y	NA
925272	925273	M28_Spy1041	M28_Spy1042	malG		TRUE	0.513	155.000	0.069	0.039		NA
925274	925275	M28_Spy1043	M28_Spy1044	malA	malD	TRUE	0.914	22.000	0.200	NA		NA
925275	925276	M28_Spy1044	M28_Spy1045	malD	malC	TRUE	0.999	-3.000	0.714	0.036	Y	NA
925276	925277	M28_Spy1045	M28_Spy1046	malC	amyA	TRUE	0.705	75.000	0.067	1.000	Y	NA
925277	925278	M28_Spy1046	M28_Spy1047	amyA	amyB	TRUE	0.988	-25.000	0.024	0.008	Y	NA
925278	925279	M28_Spy1047	M28_Spy1048	amyB	malX	TRUE	0.551	154.000	0.065	1.000	Y	NA
925281	925282	M28_Spy1050	M28_Spy1051		dltD	TRUE	0.736	31.000	0.042	NA	N	NA
925282	925283	M28_Spy1051	M28_Spy1052	dltD		TRUE	0.977	-7.000	0.409	NA		NA
925283	925284	M28_Spy1052	M28_Spy1053			TRUE	0.965	18.000	0.387	NA		NA
925284	925285	M28_Spy1053	M28_Spy1054		dltA	TRUE	0.979	-3.000	0.435	NA	N	NA
925285	925286	M28_Spy1054	M28_Spy1055	dltA		TRUE	0.984	12.000	0.549	NA		NA
925286	925287	M28_Spy1055	M28_Spy1056		uvrB	FALSE	0.045	264.000	0.000	NA		NA
925288	925289	M28_Spy1057	M28_Spy1058	glnH	glnQ.2	TRUE	0.992	0.000	0.326	1.000	Y	NA
925290	925291	M28_Spy1059	M28_Spy1060			TRUE	0.958	-3.000	0.182	NA		NA
925291	925292	M28_Spy1060	M28_Spy1061			FALSE	0.378	178.000	0.273	NA		NA
925292	925293	M28_Spy1061	M28_Spy1062			TRUE	0.985	-3.000	0.500	NA		NA
925293	925294	M28_Spy1062	M28_Spy1063			TRUE	0.998	3.000	0.500	0.014	Y	NA
925294	925295	M28_Spy1063	M28_Spy1064			TRUE	0.976	-7.000	0.064	0.014	N	NA
925295	925296	M28_Spy1064	M28_Spy1065			FALSE	0.303	106.000	0.064	1.000		NA
925296	925297	M28_Spy1065	M28_Spy1066		bglA.2	TRUE	0.984	9.000	0.500	1.000		NA
925299	925300	M28_Spy1068	M28_Spy1069		obgE	FALSE	0.364	69.000	0.009	NA		NA
925300	925301	M28_Spy1069	M28_Spy1070	obgE		TRUE	0.423	63.000	0.011	NA		NA
925302	925303	M28_Spy1071	M28_Spy1072			TRUE	0.969	21.000	0.000	0.064	Y	NA
925308	925309	M28_Spy1077	M28_Spy1078			FALSE	0.158	85.000	0.000	NA		NA
925309	925310	M28_Spy1078	M28_Spy1079			FALSE	0.021	421.000	0.000	1.000		NA
925310	925311	M28_Spy1079	M28_Spy1080			TRUE	0.606	97.000	0.400	NA		NA
925311	925312	M28_Spy1080	M28_Spy1081			FALSE	0.015	698.000	0.000	NA		NA
925312	925313	M28_Spy1081	M28_Spy1082			TRUE	0.643	126.000	0.500	NA		NA
925313	925314	M28_Spy1082	M28_Spy1083			FALSE	0.020	431.000	0.000	NA		NA
925314	925315	M28_Spy1083	M28_Spy1084			FALSE	0.015	725.000	0.000	NA		NA
925315	925316	M28_Spy1084	M28_Spy1085			FALSE	0.018	487.000	0.000	NA		NA
925316	925317	M28_Spy1085	M28_Spy1086			FALSE	0.014	844.000	0.000	NA		NA
925317	925318	M28_Spy1086	M28_Spy1087			FALSE	0.134	105.000	0.000	NA		NA
925318	925319	M28_Spy1087	M28_Spy1088			TRUE	0.666	68.000	0.286	NA		NA
925319	925320	M28_Spy1088	M28_Spy1089			TRUE	0.961	20.000	0.400	NA		NA
925320	925321	M28_Spy1089	M28_Spy1090			FALSE	0.107	156.000	0.000	NA		NA
925321	925322	M28_Spy1090	M28_Spy1091			TRUE	0.608	49.000	0.093	1.000	N	NA
925322	925323	M28_Spy1091	M28_Spy1092		aroK	FALSE	0.165	208.000	0.111	1.000	N	NA
925323	925324	M28_Spy1092	M28_Spy1093	aroK		TRUE	0.973	-7.000	0.012	1.000	Y	NA
925324	925325	M28_Spy1093	M28_Spy1094			FALSE	0.203	111.000	0.003	1.000		NA
925325	925326	M28_Spy1094	M28_Spy1095		map	TRUE	0.980	2.000	0.373	1.000		NA
925326	925327	M28_Spy1095	M28_Spy1096	map		TRUE	0.943	16.000	0.235	1.000	N	NA
925327	925328	M28_Spy1096	M28_Spy1097			TRUE	0.974	-3.000	0.342	1.000	N	NA
925328	925329	M28_Spy1097	M28_Spy1098		grab	FALSE	0.058	238.000	0.000	1.000		NA
925329	925330	M28_Spy1098	M28_Spy1099	grab	murZ	FALSE	0.028	358.000	0.000	1.000		NA
925330	925331	M28_Spy1099	M28_Spy1100	murZ	metK2	FALSE	0.166	174.000	0.026	1.000	N	NA
925331	925332	M28_Spy1100	M28_Spy1101	metK2	inlA	FALSE	0.017	536.000	0.000	1.000		NA
925334	925335	M28_Spy1103	M28_Spy1104			FALSE	0.158	85.000	0.000	NA		NA
925335	925336	M28_Spy1104	M28_Spy1105			FALSE	0.380	261.000	0.000	0.063	Y	NA
925336	925337	M28_Spy1105	M28_Spy1106			TRUE	0.915	0.000	0.030	NA	N	NA
925339	925340	M28_Spy1108	M28_Spy1109		udk	FALSE	0.295	80.000	0.010	NA		NA
925342	925343	M28_Spy1111	M28_Spy1112		gapN	FALSE	0.246	95.000	0.028	1.000	N	NA
925343	925344	M28_Spy1112	M28_Spy1113	gapN	pstI	FALSE	0.157	185.000	0.035	1.000	N	NA
925344	925345	M28_Spy1113	M28_Spy1114	pstI	ptsH	TRUE	0.996	5.000	0.240	0.013	Y	NA
925346	925347	M28_Spy1115	M28_Spy1116	nrdH	nrdE.2	TRUE	0.972	20.000	0.562	1.000	N	NA
925349	925350	M28_Spy1118	M28_Spy1119	nrdF.2		TRUE	0.876	-25.000	0.083	1.000	N	NA
925351	925352	M28_Spy1123	M28_Spy1124			TRUE	0.893	19.000	0.077	NA		NA
925352	925353	M28_Spy1124	M28_Spy1125			TRUE	0.978	-3.000	0.362	NA		NA
925353	925354	M28_Spy1125	M28_Spy1126		alaS	FALSE	0.021	346.000	0.000	1.000	N	NA
925354	925355	M28_Spy1126	M28_Spy1127	alaS	surA	FALSE	0.017	387.000	0.000	1.000	N	NA
925355	925356	M28_Spy1127	M28_Spy1128	surA		TRUE	0.434	63.000	0.012	1.000		NA
925356	925357	M28_Spy1128	M28_Spy1129			FALSE	0.407	66.000	0.012	1.000		NA
925357	925358	M28_Spy1129	M28_Spy1130		pepB	FALSE	0.017	376.000	0.000	1.000	N	NA
925358	925359	M28_Spy1130	M28_Spy1131	pepB		TRUE	0.951	13.000	0.204	NA		NA
925359	925360	M28_Spy1131	M28_Spy1132			FALSE	0.076	295.000	0.020	NA		NA
925360	925361	M28_Spy1132	M28_Spy1133		nagB	FALSE	0.231	119.000	0.051	1.000	N	NA
925362	925363	M28_Spy1134	M28_Spy1135	queA		TRUE	0.897	7.000	0.004	NA		NA
925364	925365	M28_Spy1136	M28_Spy1137			TRUE	0.840	-3.000	0.000	NA		NA
925365	925366	M28_Spy1137	M28_Spy1138			FALSE	0.309	56.000	0.000	NA		NA
925366	925367	M28_Spy1138	M28_Spy1139		sodA	FALSE	0.099	167.000	0.000	NA		NA
925367	925368	M28_Spy1139	M28_Spy1140	sodA		FALSE	0.221	96.000	0.012	1.000	N	NA
925368	925369	M28_Spy1140	M28_Spy1141		comEC.1	TRUE	0.523	71.000	0.163	1.000		NA
925369	925370	M28_Spy1141	M28_Spy1142	comEC.1	comEC.2	TRUE	0.840	-3.000	0.000	NA		NA
925370	925371	M28_Spy1142	M28_Spy1143	comEC.2	comEA	TRUE	0.763	-19.000	0.000	NA		NA
925371	925372	M28_Spy1143	M28_Spy1145	comEA		FALSE	0.122	199.000	0.014	1.000	N	NA
925373	925374	M28_Spy1144	M28_Spy1146			TRUE	0.954	-10.000	0.209	1.000		NA
925375	925376	M28_Spy1147	M28_Spy1148		deaD	FALSE	0.182	127.000	0.007	1.000	N	NA
925376	925377	M28_Spy1148	M28_Spy1149	deaD	prfC	FALSE	0.149	307.000	0.000	1.000	Y	NA
925377	925378	M28_Spy1149	M28_Spy1150	prfC		FALSE	0.086	248.000	0.003	NA		NA
925378	925379	M28_Spy1150	M28_Spy1151		murF	FALSE	0.380	80.000	0.078	NA		NA
925379	925380	M28_Spy1151	M28_Spy1152	murF	ddlA	TRUE	0.709	199.000	0.046	0.009	Y	NA
925380	925381	M28_Spy1152	M28_Spy1153	ddlA	recR	FALSE	0.209	101.000	0.010	1.000	N	NA
925381	925382	M28_Spy1153	M28_Spy1154	recR		FALSE	0.396	47.000	0.000	NA		NA
925382	925383	M28_Spy1154	M28_Spy1155			FALSE	0.016	560.000	0.000	NA		NA
925383	925384	M28_Spy1155	M28_Spy1156			TRUE	0.875	22.000	0.105	NA		NA
925384	925385	M28_Spy1156	M28_Spy1157			FALSE	0.264	161.000	0.107	NA		NA
925385	925386	M28_Spy1157	M28_Spy1158		gpmA	FALSE	0.243	107.000	0.012	1.000		NA
925388	925389	M28_Spy1160	M28_Spy1161			FALSE	0.368	72.000	0.018	NA		NA
925389	925390	M28_Spy1161	M28_Spy1162			FALSE	0.021	354.000	0.000	1.000	N	NA
925390	925391	M28_Spy1162	M28_Spy1163			FALSE	0.383	99.000	0.156	NA		NA
925391	925392	M28_Spy1163	M28_Spy1164			TRUE	0.988	-22.000	0.828	NA		NA
925392	925393	M28_Spy1164	M28_Spy1165			TRUE	0.932	-25.000	0.203	NA		NA
925393	925394	M28_Spy1165	M28_Spy1166			FALSE	0.064	216.000	0.000	NA		NA
925394	925395	M28_Spy1166	M28_Spy1167		recN	FALSE	0.099	172.000	0.000	1.000		NA
925395	925396	M28_Spy1167	M28_Spy1168	recN	argR1	TRUE	0.854	19.000	0.037	1.000	N	NA
925396	925397	M28_Spy1168	M28_Spy1169	argR1		TRUE	0.824	-46.000	0.048	1.000	N	NA
925397	925398	M28_Spy1169	M28_Spy1170		fps	TRUE	0.908	-7.000	0.058	1.000	N	NA
925398	925399	M28_Spy1170	M28_Spy1171	fps	xseB	TRUE	0.936	0.000	0.100	1.000	N	NA
925399	925400	M28_Spy1171	M28_Spy1172	xseB		TRUE	0.997	-22.000	0.412	0.001	Y	NA
925400	925401	M28_Spy1172	M28_Spy1173		folD	FALSE	0.227	138.000	0.045	1.000	N	NA
925401	925402	M28_Spy1173	M28_Spy1174	folD		FALSE	0.118	202.000	0.013	1.000	N	NA
925402	925403	M28_Spy1174	M28_Spy1175		phr	FALSE	0.131	169.000	0.004	1.000	N	NA
925403	925404	M28_Spy1175	M28_Spy1176	phr	artP	FALSE	0.095	125.000	0.000	1.000	N	NA
925404	925405	M28_Spy1176	M28_Spy1177	artP	artQ	TRUE	0.996	-3.000	0.640	1.000	Y	NA
925405	925406	M28_Spy1177	M28_Spy1178	artQ		FALSE	0.263	127.000	0.044	NA		NA
925407	925408	M28_Spy1179	M28_Spy1180	clpE	mutT	FALSE	0.260	128.000	0.079	1.000	N	NA
925408	925409	M28_Spy1180	M28_Spy1181	mutT		TRUE	0.632	51.000	0.114	NA		NA
925410	925411	M28_Spy1182	M28_Spy1183	ileS	divIVAS	FALSE	0.069	273.000	0.012	NA	N	NA
925411	925412	M28_Spy1183	M28_Spy1184	divIVAS		TRUE	0.987	10.000	0.579	NA		NA
925412	925413	M28_Spy1184	M28_Spy1185			TRUE	0.974	0.000	0.287	1.000		NA
925413	925414	M28_Spy1185	M28_Spy1186			TRUE	0.978	5.000	0.370	NA		NA
925414	925415	M28_Spy1186	M28_Spy1187			TRUE	0.962	0.000	0.194	NA		NA
925415	925416	M28_Spy1187	M28_Spy1188		ftsZ	TRUE	0.928	3.000	0.030	NA		NA
925416	925417	M28_Spy1188	M28_Spy1189	ftsZ	ftsA	TRUE	0.984	24.000	0.460	1.000	Y	NA
925417	925418	M28_Spy1189	M28_Spy1190	ftsA	divIB	FALSE	0.357	212.000	0.389	NA	N	NA
925418	925419	M28_Spy1190	M28_Spy1191	divIB	murG	TRUE	0.982	1.000	0.072	NA	Y	NA
925419	925420	M28_Spy1191	M28_Spy1192	murG	murD	TRUE	0.968	-21.000	0.060	1.000	Y	NA
925420	925421	M28_Spy1192	M28_Spy1193	murD		FALSE	0.049	356.000	0.006	NA		NA
925421	925422	M28_Spy1193	M28_Spy1194		typA	FALSE	0.233	122.000	0.015	NA		NA
925422	925423	M28_Spy1194	M28_Spy1195	typA		FALSE	0.112	183.000	0.003	NA	N	NA
925423	925424	M28_Spy1195	M28_Spy1196		glcK	TRUE	0.915	10.000	0.064	NA	N	NA
925424	925425	M28_Spy1196	M28_Spy1197	glcK		TRUE	0.984	5.000	0.496	NA		NA
925425	925426	M28_Spy1197	M28_Spy1198		dpr	FALSE	0.274	124.000	0.058	NA		NA
925428	925429	M28_Spy1200	M28_Spy1201			TRUE	0.921	4.000	0.016	NA		NA
925429	925430	M28_Spy1201	M28_Spy1202			FALSE	0.043	271.000	0.000	NA		NA
925430	925431	M28_Spy1202	M28_Spy1203			TRUE	0.580	31.000	0.000	NA		NA
925431	925432	M28_Spy1203	M28_Spy1204			FALSE	0.019	367.000	0.000	1.000	N	NA
925432	925433	M28_Spy1204	M28_Spy1205			TRUE	0.889	-13.000	0.052	1.000	N	NA
925433	925434	M28_Spy1205	M28_Spy1206			TRUE	0.968	-10.000	0.367	1.000	N	NA
925434	925435	M28_Spy1206	M28_Spy1207		asnA	FALSE	0.176	123.000	0.006	1.000	N	NA
925435	925436	M28_Spy1207	M28_Spy1208	asnA	arcC	FALSE	0.144	313.000	0.000	1.000	Y	NA
925436	925437	M28_Spy1208	M28_Spy1209	arcC		TRUE	0.960	20.000	0.035	1.000	Y	NA
925437	925438	M28_Spy1209	M28_Spy1210			TRUE	0.920	17.000	0.140	1.000		NA
925438	925439	M28_Spy1210	M28_Spy1211		arcB	FALSE	0.252	170.000	0.104	1.000		NA
925439	925440	M28_Spy1211	M28_Spy1212	arcB		TRUE	0.749	40.000	0.104	1.000		NA
925440	925441	M28_Spy1212	M28_Spy1213		arcA	FALSE	0.304	100.000	0.056	1.000		NA
925441	925442	M28_Spy1213	M28_Spy1214	arcA		FALSE	0.031	274.000	0.000	1.000	N	NA
925444	925445	M28_Spy1216	M28_Spy1217			TRUE	0.913	4.000	0.009	NA		NA
925445	925446	M28_Spy1217	M28_Spy1218			FALSE	0.328	73.000	0.007	1.000		NA
925446	925447	M28_Spy1218	M28_Spy1219			TRUE	0.995	-3.000	0.480	0.012		NA
925447	925448	M28_Spy1219	M28_Spy1220			FALSE	0.053	245.000	0.000	NA		NA
925448	925449	M28_Spy1220	M28_Spy1221			FALSE	0.253	65.000	0.000	NA		NA
925449	925450	M28_Spy1221	M28_Spy1222		slaA	TRUE	0.989	-6.000	0.667	NA		NA
925450	925451	M28_Spy1222	M28_Spy1223	slaA	speK	FALSE	0.019	476.000	0.000	1.000		NA
925451	925452	M28_Spy1223	M28_Spy1224	speK		FALSE	0.036	289.000	0.000	NA		NA
925452	925453	M28_Spy1224	M28_Spy1225			TRUE	0.954	-12.000	0.231	NA		NA
925453	925454	M28_Spy1225	M28_Spy1226			FALSE	0.122	140.000	0.000	NA		NA
925454	925455	M28_Spy1226	M28_Spy1227			FALSE	0.127	111.000	0.000	NA		NA
925455	925456	M28_Spy1227	M28_Spy1228			TRUE	0.990	-3.000	0.667	NA		NA
925456	925457	M28_Spy1228	M28_Spy1229			TRUE	0.821	11.000	0.000	NA		NA
925457	925458	M28_Spy1229	M28_Spy1230			TRUE	0.995	3.000	1.000	NA		NA
925458	925459	M28_Spy1230	M28_Spy1231			TRUE	0.994	12.000	1.000	NA		NA
925459	925460	M28_Spy1231	M28_Spy1232			TRUE	0.821	11.000	0.000	NA		NA
925460	925461	M28_Spy1232	M28_Spy1233			TRUE	0.787	-13.000	0.000	NA		NA
925461	925462	M28_Spy1233	M28_Spy1234			TRUE	0.840	-3.000	0.000	NA		NA
925462	925463	M28_Spy1234	M28_Spy1235			TRUE	0.961	-3.000	0.200	NA		NA
925463	925464	M28_Spy1235	M28_Spy1236			TRUE	0.965	-3.000	0.222	NA		NA
925464	925465	M28_Spy1236	M28_Spy1237			TRUE	0.885	-31.000	0.100	NA		NA
925465	925466	M28_Spy1237	M28_Spy1238			TRUE	0.951	4.000	0.150	NA		NA
925466	925467	M28_Spy1238	M28_Spy1239			TRUE	0.972	39.000	1.000	NA		NA
925467	925468	M28_Spy1239	M28_Spy1240			TRUE	0.995	0.000	1.000	NA		NA
925468	925469	M28_Spy1240	M28_Spy1241			TRUE	0.959	-3.000	0.188	NA		NA
925469	925470	M28_Spy1241	M28_Spy1242			TRUE	0.983	0.000	0.438	NA		NA
925470	925471	M28_Spy1242	M28_Spy1243			TRUE	0.948	-37.000	0.333	NA		NA
925471	925472	M28_Spy1243	M28_Spy1244			FALSE	0.322	54.000	0.000	NA		NA
925472	925473	M28_Spy1244	M28_Spy1245			TRUE	0.842	4.000	0.000	NA		NA
925473	925474	M28_Spy1245	M28_Spy1246			FALSE	0.125	126.000	0.000	NA		NA
925474	925475	M28_Spy1246	M28_Spy1247			FALSE	0.272	62.000	0.000	NA		NA
925475	925476	M28_Spy1247	M28_Spy1248			TRUE	0.723	-28.000	0.000	NA		NA
925476	925477	M28_Spy1248	M28_Spy1249			TRUE	0.987	5.000	0.567	NA		NA
925477	925478	M28_Spy1249	M28_Spy1250			TRUE	0.882	-94.000	0.167	NA		NA
925478	925479	M28_Spy1250	M28_Spy1251			TRUE	0.456	83.000	0.182	NA		NA
925479	925480	M28_Spy1251	M28_Spy1252			TRUE	0.840	-3.000	0.000	NA		NA
925480	925481	M28_Spy1252	M28_Spy1253			FALSE	0.279	61.000	0.000	NA		NA
925481	925482	M28_Spy1253	M28_Spy1254			FALSE	0.124	123.000	0.000	NA		NA
925482	925483	M28_Spy1254	M28_Spy1255			TRUE	0.765	-21.000	0.000	1.000		NA
925485	925486	M28_Spy1257	M28_Spy1258			FALSE	0.117	146.000	0.000	NA		NA
925486	925487	M28_Spy1258	M28_Spy1259			FALSE	0.020	429.000	0.000	NA		NA
925487	925488	M28_Spy1259	M28_Spy1260			TRUE	0.840	-3.000	0.000	NA		NA
925488	925489	M28_Spy1260	M28_Spy1261			TRUE	0.840	-3.000	0.000	NA		NA
925489	925490	M28_Spy1261	M28_Spy1262			TRUE	0.827	10.000	0.000	NA		NA
925490	925491	M28_Spy1262	M28_Spy1263			TRUE	0.710	-33.000	0.000	NA		NA
925491	925492	M28_Spy1263	M28_Spy1264			TRUE	0.823	-6.000	0.000	NA		NA
925492	925493	M28_Spy1264	M28_Spy1265			TRUE	0.995	-3.000	1.000	NA		NA
925493	925494	M28_Spy1265	M28_Spy1266			TRUE	0.922	-3.000	0.018	NA		NA
925494	925495	M28_Spy1266	M28_Spy1267			TRUE	0.849	0.000	0.000	NA		NA
925495	925496	M28_Spy1267	M28_Spy1268		ssb2.1	TRUE	0.837	6.000	0.000	NA		NA
925496	925497	M28_Spy1268	M28_Spy1269	ssb2.1	ssb1	TRUE	0.936	-7.000	0.125	NA		NA
925497	925498	M28_Spy1269	M28_Spy1270	ssb1		TRUE	0.948	1.000	0.125	NA		NA
925498	925499	M28_Spy1270	M28_Spy1271			TRUE	0.936	22.000	0.286	NA		NA
925499	925500	M28_Spy1271	M28_Spy1272			TRUE	0.801	-10.000	0.000	NA		NA
925500	925501	M28_Spy1272	M28_Spy1273			TRUE	0.840	-3.000	0.000	NA		NA
925501	925502	M28_Spy1273	M28_Spy1274			TRUE	0.763	-19.000	0.000	NA		NA
925502	925503	M28_Spy1274	M28_Spy1275			FALSE	0.240	122.000	0.018	NA		NA
925503	925504	M28_Spy1275	M28_Spy1276			FALSE	0.146	94.000	0.000	NA		NA
925504	925505	M28_Spy1276	M28_Spy1277			TRUE	0.604	29.000	0.000	NA		NA
925505	925506	M28_Spy1277	M28_Spy1278			FALSE	0.103	159.000	0.000	NA		NA
925506	925507	M28_Spy1278	M28_Spy1279			FALSE	0.083	186.000	0.000	NA		NA
925507	925508	M28_Spy1279	M28_Spy1280			TRUE	0.553	33.000	0.000	NA		NA
925508	925509	M28_Spy1280	M28_Spy1281			TRUE	0.948	11.000	0.000	0.061		NA
925510	925511	M28_Spy1282	M28_Spy1283			TRUE	0.993	14.000	1.000	NA		NA
925511	925512	M28_Spy1283	M28_Spy1284			TRUE	0.821	11.000	0.000	NA		NA
925512	925513	M28_Spy1284	M28_Spy1285			FALSE	0.124	116.000	0.000	NA		NA
925514	925515	M28_Spy1286	M28_Spy1287	msrA	tlpA	TRUE	0.985	43.000	0.875	1.000	Y	NA
925515	925516	M28_Spy1287	M28_Spy1288	tlpA	ccdA	TRUE	0.993	13.000	0.500	1.000	Y	NA
925516	925517	M28_Spy1288	M28_Spy1289	ccdA		FALSE	0.016	406.000	0.000	1.000	N	NA
925517	925518	M28_Spy1289	M28_Spy1290			TRUE	0.997	11.000	0.882	1.000	Y	NA
925518	925519	M28_Spy1290	M28_Spy1291			TRUE	0.997	-3.000	0.773	NA	Y	NA
925519	925520	M28_Spy1291	M28_Spy1292			TRUE	0.997	2.000	0.711	NA	Y	NA
925520	925521	M28_Spy1292	M28_Spy1293			TRUE	0.993	-10.000	0.948	NA		NA
925521	925522	M28_Spy1293	M28_Spy1294			TRUE	0.994	0.000	0.891	NA		NA
925522	925523	M28_Spy1294	M28_Spy1295			TRUE	0.723	133.000	0.664	NA		NA
925523	925524	M28_Spy1295	M28_Spy1296		valS	FALSE	0.114	154.000	0.000	1.000		NA
925524	925525	M28_Spy1296	M28_Spy1297	valS		TRUE	0.915	2.000	0.008	NA		NA
925525	925526	M28_Spy1297	M28_Spy1298			TRUE	0.878	-24.000	0.033	NA		NA
925526	925527	M28_Spy1298	M28_Spy1299			FALSE	0.020	426.000	0.000	NA		NA
925527	925528	M28_Spy1299	M28_Spy1300			TRUE	0.709	21.000	0.000	NA		NA
925528	925529	M28_Spy1300	M28_Spy1301			TRUE	0.781	-15.000	0.000	NA		NA
925529	925530	M28_Spy1301	M28_Spy1302			TRUE	0.774	-16.000	0.000	NA		NA
925532	925533	M28_Spy1303	M28_Spy1304			TRUE	0.658	50.000	0.133	NA		NA
925533	925534	M28_Spy1304	M28_Spy1305			FALSE	0.270	167.000	0.133	NA		NA
925534	925535	M28_Spy1305	M28_Spy1306			FALSE	0.060	223.000	0.000	NA		NA
925535	925536	M28_Spy1306	M28_Spy1307			TRUE	0.959	25.000	0.500	NA		NA
925536	925537	M28_Spy1307	M28_Spy1308			TRUE	0.977	0.000	0.333	NA		NA
925539	925540	M28_Spy1310	M28_Spy1311			TRUE	0.968	15.000	0.364	NA		NA
925540	925541	M28_Spy1311	M28_Spy1312			TRUE	0.913	21.000	0.182	NA		NA
925541	925542	M28_Spy1312	M28_Spy1313			TRUE	0.992	3.000	0.750	NA		NA
925542	925543	M28_Spy1313	M28_Spy1314			TRUE	0.985	19.000	0.750	NA		NA
925543	925544	M28_Spy1314	M28_Spy1315			TRUE	0.986	1.000	0.500	NA		NA
925544	925545	M28_Spy1315	M28_Spy1316			TRUE	0.984	8.000	0.500	NA		NA
925545	925546	M28_Spy1316	M28_Spy1317			TRUE	0.592	30.000	0.000	NA		NA
925546	925547	M28_Spy1317	M28_Spy1318			TRUE	0.877	44.000	0.400	NA		NA
925547	925548	M28_Spy1318	M28_Spy1319			FALSE	0.077	195.000	0.000	NA		NA
925548	925549	M28_Spy1319	M28_Spy1320			FALSE	0.350	51.000	0.000	NA		NA
925549	925550	M28_Spy1320	M28_Spy1321			TRUE	0.977	1.000	0.333	NA		NA
925550	925551	M28_Spy1321	M28_Spy1322			FALSE	0.032	312.000	0.000	1.000		NA
925551	925552	M28_Spy1322	M28_Spy1323			TRUE	0.727	20.000	0.000	NA		NA
925552	925553	M28_Spy1323	M28_Spy1324			TRUE	0.995	3.000	1.000	NA		NA
925553	925554	M28_Spy1324	M28_Spy1325			FALSE	0.200	262.000	0.222	NA		NA
925554	925555	M28_Spy1325	M28_Spy1326			FALSE	0.381	170.000	0.000	0.012		NA
925555	925556	M28_Spy1326	M28_Spy1327			FALSE	0.147	93.000	0.000	NA		NA
925556	925557	M28_Spy1327	M28_Spy1328			FALSE	0.282	124.000	0.065	NA		NA
925557	925558	M28_Spy1328	M28_Spy1329			FALSE	0.109	158.000	0.000	1.000		NA
925559	925560	M28_Spy1330	M28_Spy1331			TRUE	0.985	7.000	0.500	NA		NA
925561	925562	M28_Spy1332	M28_Spy1333			TRUE	0.928	3.000	0.031	NA		NA
925562	925563	M28_Spy1333	M28_Spy1334			TRUE	0.926	-3.000	0.031	NA		NA
925566	925567	M28_Spy1337	M28_Spy1338			FALSE	0.013	518.000	0.000	1.000	N	NA
925567	925568	M28_Spy1338	M28_Spy1339		aroB	TRUE	0.961	41.000	0.003	0.003	Y	NA
925569	925570	M28_Spy1340	M28_Spy1341			TRUE	0.833	8.000	0.000	NA		NA
925570	925571	M28_Spy1341	M28_Spy1342			TRUE	0.848	2.000	0.000	NA		NA
925571	925572	M28_Spy1342	M28_Spy1343			TRUE	0.536	53.000	0.026	NA		NA
925572	925573	M28_Spy1343	M28_Spy1344		aroE	FALSE	0.038	252.000	0.000	1.000	N	NA
925573	925574	M28_Spy1344	M28_Spy1345	aroE	lacZ	FALSE	0.242	138.000	0.061	1.000	N	NA
925574	925575	M28_Spy1345	M28_Spy1346	lacZ		TRUE	0.872	-70.000	0.167	1.000	N	NA
925575	925576	M28_Spy1346	M28_Spy1347			TRUE	0.996	0.000	0.167	0.011	Y	NA
925576	925577	M28_Spy1347	M28_Spy1348			TRUE	0.986	-13.000	0.667	NA		NA
925577	925578	M28_Spy1348	M28_Spy1349			FALSE	0.032	306.000	0.000	NA		NA
925578	925579	M28_Spy1349	M28_Spy1350			TRUE	0.922	81.000	0.333	0.033	Y	NA
925579	925580	M28_Spy1350	M28_Spy1351			TRUE	0.999	10.000	0.917	0.033	Y	NA
925581	925582	M28_Spy1352	M28_Spy1353			FALSE	0.118	143.000	0.000	NA		NA
925583	925584	M28_Spy1354	M28_Spy1355		hyl	TRUE	0.891	25.000	0.182	1.000		NA
925584	925585	M28_Spy1355	M28_Spy1356	hyl		TRUE	0.781	51.000	0.286	1.000		NA
925586	925587	M28_Spy1357	M28_Spy1358			TRUE	0.945	15.000	0.194	1.000		NA
925588	925589	M28_Spy1359	M28_Spy1360	rocA		FALSE	0.011	665.000	0.000	NA	N	NA
925590	925591	M28_Spy1361	M28_Spy1362	recX		FALSE	0.328	80.000	0.025	NA		NA
925594	925595	M28_SpyT0050	M28_SpyT0051			TRUE	0.679	23.000	0.000	NA		NA
925595	925596	M28_SpyT0051	M28_SpyT0052			TRUE	0.523	36.000	0.000	NA		NA
925596	925597	M28_SpyT0052	M28_SpyT0053			TRUE	0.821	11.000	0.000	NA		NA
925597	925598	M28_SpyT0053	M28_SpyT0054			TRUE	0.837	6.000	0.000	NA		NA
925598	925599	M28_SpyT0054	M28_SpyT0055			TRUE	0.567	32.000	0.000	NA		NA
925599	925600	M28_SpyT0055	M28_SpyT0056			TRUE	0.755	18.000	0.000	NA		NA
925600	925601	M28_SpyT0056	M28_SpyR0013			TRUE	0.679	23.000	0.000	NA		NA
925601	925602	M28_SpyR0013	M28_SpyR0014			FALSE	0.149	92.000	0.000	NA		NA
925602	925603	M28_SpyR0014	M28_SpyT0057			FALSE	0.033	300.000	0.000	NA		NA
925603	925604	M28_SpyT0057	M28_SpyR0015			FALSE	0.333	53.000	0.000	NA		NA
925606	925607	M28_Spy1366	M28_Spy1367		comFC	FALSE	0.381	80.000	0.080	NA		NA
925607	925608	M28_Spy1367	M28_Spy1368	comFC	comFA	TRUE	0.897	-28.000	0.130	NA		NA
925609	925610	M28_Spy1369	M28_Spy1370		cysM	FALSE	0.261	128.000	0.033	1.000		NA
925611	925612	M28_Spy1371	M28_Spy1372			TRUE	0.955	0.000	0.151	1.000		NA
925612	925613	M28_Spy1372	M28_Spy1373		yvqC	TRUE	0.881	25.000	0.164	1.000		NA
925613	925614	M28_Spy1373	M28_Spy1374	yvqC	yvqE	TRUE	0.999	-13.000	0.853	0.011	Y	NA
925614	925615	M28_Spy1374	M28_Spy1375	yvqE	yvqF	TRUE	0.990	-3.000	0.679	NA		NA
925615	925616	M28_Spy1375	M28_Spy1376	yvqF		FALSE	0.392	72.000	0.039	NA		NA
925616	925617	M28_Spy1376	M28_Spy1377		pppL	TRUE	0.997	-3.000	0.704	1.000	Y	NA
925617	925618	M28_Spy1377	M28_Spy1378	pppL	sunL	TRUE	0.713	38.000	0.074	1.000	N	NA
925618	925619	M28_Spy1378	M28_Spy1379	sunL		TRUE	0.979	-46.000	0.305	1.000	Y	NA
925619	925620	M28_Spy1379	M28_Spy1380		priA	TRUE	0.446	62.000	0.052	1.000	N	NA
925620	925621	M28_Spy1380	M28_Spy1381	priA		TRUE	0.859	38.000	0.032	0.059	N	NA
925621	925622	M28_Spy1381	M28_Spy1382		gmk	TRUE	0.971	16.000	0.471	1.000	N	NA
925622	925623	M28_Spy1382	M28_Spy1383	gmk		FALSE	0.231	110.000	0.010	1.000		NA
925623	925624	M28_Spy1383	M28_Spy1384			FALSE	0.213	130.000	0.006	1.000		NA
925625	925626	M28_Spy1385	M28_Spy1386	atoB	atoD.1	TRUE	0.982	12.000	0.150	1.000	Y	NA
925626	925627	M28_Spy1386	M28_Spy1387	atoD.1	atoA	TRUE	0.997	2.000	0.200	0.002	Y	NA
925627	925628	M28_Spy1387	M28_Spy1388	atoA		TRUE	0.972	33.000	0.111	0.038	Y	NA
925628	925629	M28_Spy1388	M28_Spy1389			TRUE	0.649	71.000	0.333	1.000	N	NA
925629	925630	M28_Spy1389	M28_Spy1390		luxS	TRUE	0.838	-16.000	0.006	1.000	N	NA
925631	925632	M28_Spy1391	M28_Spy1392			TRUE	0.899	14.000	0.029	NA		NA
925632	925633	M28_Spy1392	M28_Spy1393			FALSE	0.019	445.000	0.000	NA		NA
925633	925634	M28_Spy1393	M28_Spy1394			TRUE	0.691	122.000	0.579	NA		NA
925635	925636	M28_Spy1395	M28_Spy1396	recU	pbp1A	TRUE	0.965	-13.000	0.319	1.000		NA
925637	925638	M28_Spy1397	M28_Spy1398	pepC		FALSE	0.144	185.000	0.017	1.000	N	NA
925638	925639	M28_Spy1398	M28_Spy1399		nadE	TRUE	0.992	-40.000	0.194	0.003	Y	NA
925639	925640	M28_Spy1399	M28_Spy1400	nadE		FALSE	0.173	171.000	0.032	1.000	N	NA
925640	925641	M28_Spy1400	M28_Spy1401			FALSE	0.192	157.000	0.033	1.000	N	NA
925641	925642	M28_Spy1401	M28_Spy1402		aapA	TRUE	0.531	64.000	0.117	NA		NA
925642	925643	M28_Spy1402	M28_Spy1403	aapA		TRUE	0.567	104.000	0.364	NA		NA
925643	925644	M28_Spy1403	M28_Spy1404			TRUE	0.991	-3.000	0.310	1.000	Y	NA
925644	925645	M28_Spy1404	M28_Spy1406			FALSE	0.223	105.000	0.018	1.000	N	NA
925647	925648	M28_Spy1407	M28_Spy1408			TRUE	0.981	2.000	0.038	1.000	Y	NA
925648	925649	M28_Spy1408	M28_Spy1409		ftsL	TRUE	0.981	4.000	0.456	1.000	N	NA
925649	925650	M28_Spy1409	M28_Spy1410	ftsL	mraW	TRUE	0.873	-25.000	0.077	1.000	N	NA
925650	925651	M28_Spy1410	M28_Spy1411	mraW		TRUE	0.674	24.000	0.000	1.000		NA
925651	925652	M28_Spy1411	M28_Spy1412			TRUE	0.447	43.000	0.000	NA		NA
925652	925653	M28_Spy1412	M28_Spy1413		proA	TRUE	0.739	-25.000	0.000	NA		NA
925653	925654	M28_Spy1413	M28_Spy1414	proA		TRUE	0.997	-7.000	0.281	0.002	Y	NA
925654	925655	M28_Spy1414	M28_Spy1415		proB	TRUE	0.437	58.000	0.006	NA		NA
925655	925656	M28_Spy1415	M28_Spy1416	proB		TRUE	0.950	-37.000	0.341	NA		NA
925656	925657	M28_Spy1416	M28_Spy1417			TRUE	0.803	34.000	0.136	NA		NA
925657	925658	M28_Spy1417	M28_Spy1418		tkt	FALSE	0.370	193.000	0.300	NA		NA
925658	925659	M28_Spy1418	M28_Spy1419	tkt		FALSE	0.263	218.000	0.000	1.000	Y	NA
925659	925660	M28_Spy1419	M28_Spy1420			FALSE	0.125	126.000	0.000	NA		NA
925660	925661	M28_Spy1420	M28_Spy1421			TRUE	0.955	-70.000	0.462	NA		NA
925661	925662	M28_Spy1421	M28_Spy1422		glpF	TRUE	0.967	16.000	0.364	1.000		NA
925662	925663	M28_Spy1422	M28_Spy1423	glpF	glpO	TRUE	0.984	2.000	0.500	1.000	N	NA
925663	925664	M28_Spy1423	M28_Spy1424	glpO	glpK	TRUE	0.998	16.000	0.500	0.001	Y	NA
925664	925665	M28_Spy1424	M28_Spy1425	glpK		FALSE	0.028	360.000	0.000	1.000		NA
925665	925666	M28_Spy1425	M28_Spy1426			TRUE	0.428	67.000	0.029	NA		NA
925666	925667	M28_Spy1426	M28_Spy1427		glyS	FALSE	0.218	154.000	0.020	NA		NA
925667	925668	M28_Spy1427	M28_Spy1428	glyS	glyQ	TRUE	0.818	378.000	0.651	0.001	Y	NA
925668	925669	M28_Spy1428	M28_Spy1429	glyQ		FALSE	0.025	372.000	0.000	1.000		NA
925669	925670	M28_Spy1429	M28_Spy1430			FALSE	0.297	132.000	0.074	1.000		NA
925670	925671	M28_Spy1430	M28_Spy1431		nagA	FALSE	0.266	119.000	0.045	1.000		NA
925671	925672	M28_Spy1431	M28_Spy1432	nagA		FALSE	0.263	117.000	0.090	1.000	N	NA
925676	925677	M28_Spy1436	M28_Spy1437			TRUE	0.839	-55.000	0.047	NA		NA
925677	925678	M28_Spy1437	M28_Spy1438		lacD.1	FALSE	0.155	197.000	0.019	NA		NA
925678	925679	M28_Spy1438	M28_Spy1439	lacD.1		TRUE	0.600	82.000	0.000	0.002		NA
925679	925680	M28_Spy1439	M28_Spy1440		lacB.1	FALSE	0.104	165.000	0.000	1.000		NA
925680	925681	M28_Spy1440	M28_Spy1441	lacB.1	lacA.1	TRUE	0.998	12.000	0.500	0.002	Y	NA
925681	925682	M28_Spy1441	M28_Spy1442	lacA.1		FALSE	0.208	257.000	0.000	1.000	Y	NA
925682	925683	M28_Spy1442	M28_Spy1443			TRUE	0.967	26.000	0.000	0.017	Y	NA
925683	925684	M28_Spy1443	M28_Spy1444			TRUE	0.997	-7.000	0.429	0.012	Y	NA
925686	925687	M28_Spy1446	M28_Spy1447		copZ	TRUE	0.975	7.000	0.333	NA		NA
925687	925688	M28_Spy1447	M28_Spy1448	copZ	copA	TRUE	0.993	14.000	0.048	0.002	Y	NA
925688	925689	M28_Spy1448	M28_Spy1449	copA	copY	TRUE	0.929	0.000	0.064	1.000	N	NA
925691	925692	M28_Spy1451	M28_Spy1452	rbfA	infB	TRUE	0.754	200.000	0.530	1.000	Y	NA
925692	925693	M28_Spy1452	M28_Spy1453	infB		TRUE	0.978	20.000	0.223	NA	Y	NA
925693	925694	M28_Spy1453	M28_Spy1454			TRUE	0.974	-7.000	0.408	NA	N	NA
925694	925695	M28_Spy1454	M28_Spy1455		nusA	TRUE	0.989	13.000	0.323	NA	Y	NA
925695	925696	M28_Spy1455	M28_Spy1456	nusA		TRUE	0.702	175.000	0.759	NA		NA
925696	925697	M28_Spy1456	M28_SpyT0058			FALSE	0.131	108.000	0.000	NA		NA
925697	925698	M28_SpyT0058	M28_Spy1457			FALSE	0.253	65.000	0.000	NA		NA
925698	925699	M28_Spy1457	M28_Spy1458			TRUE	0.955	0.000	0.154	NA		NA
925699	925700	M28_Spy1458	M28_Spy1459			TRUE	0.476	64.000	0.107	NA	N	NA
925700	925701	M28_Spy1459	M28_Spy1460			TRUE	0.949	3.000	0.167	NA	N	NA
925702	925703	M28_Spy1461	M28_Spy1462	hit		TRUE	0.935	-3.000	0.063	NA		NA
925704	925705	M28_Spy1463	M28_Spy1464	lytR		TRUE	0.964	9.000	0.283	NA	N	NA
925705	925706	M28_Spy1464	M28_Spy1465			TRUE	0.872	-25.000	0.033	NA		NA
925706	925707	M28_Spy1465	M28_Spy1466			FALSE	0.191	154.000	0.008	NA		NA
925708	925709	M28_Spy1467	M28_Spy1468		manL	FALSE	0.029	352.000	0.000	1.000		NA
925709	925710	M28_Spy1468	M28_Spy1469	manL	manM	TRUE	0.978	89.000	0.943	0.017	Y	NA
925710	925711	M28_Spy1469	M28_Spy1470	manM	manN	TRUE	0.998	17.000	0.812	0.017	Y	NA
925711	925712	M28_Spy1470	M28_Spy1471	manN	manO	TRUE	0.697	114.000	0.583	NA		NA
925712	925713	M28_Spy1471	M28_Spy1472	manO	serS	FALSE	0.037	392.000	0.003	NA		NA
925714	925715	M28_Spy1473	M28_Spy1474	accD	accA	TRUE	0.997	-3.000	0.234	0.002	Y	NA
925715	925716	M28_Spy1474	M28_Spy1475	accA	accC	TRUE	0.995	9.000	0.090	0.002	Y	NA
925716	925717	M28_Spy1475	M28_Spy1476	accC	fabZ	TRUE	0.924	32.000	0.045	1.000	Y	NA
925717	925718	M28_Spy1476	M28_Spy1477	fabZ	accB	TRUE	0.994	-3.000	0.047	0.006	Y	NA
925718	925719	M28_Spy1477	M28_Spy1478	accB	fabF	TRUE	0.983	2.000	0.074	1.000	Y	NA
925719	925720	M28_Spy1478	M28_Spy1479	fabF		TRUE	0.972	15.000	0.056	1.000	Y	NA
925720	925721	M28_Spy1479	M28_Spy1480		fabD	TRUE	0.997	-10.000	0.432	0.006	Y	NA
925721	925722	M28_Spy1480	M28_Spy1481	fabD	fabK	TRUE	0.901	19.000	0.099	1.000		NA
925722	925723	M28_Spy1481	M28_Spy1482	fabK	acpP.2	FALSE	0.289	202.000	0.216	1.000		NA
925723	925724	M28_Spy1482	M28_Spy1483	acpP.2	fabH	TRUE	0.825	61.000	0.065	0.006		NA
925724	925725	M28_Spy1483	M28_Spy1484	fabH		TRUE	0.930	1.000	0.070	1.000	N	NA
925725	925726	M28_Spy1484	M28_Spy1485		phaB	TRUE	0.513	59.000	0.098	1.000	N	NA
925726	925727	M28_Spy1485	M28_Spy1486	phaB	dnaJ	FALSE	0.047	220.000	0.000	1.000	N	NA
925727	925728	M28_Spy1486	M28_Spy1487	dnaJ	dnaK	TRUE	0.765	227.000	0.196	0.003	Y	NA
925728	925729	M28_Spy1487	M28_Spy1488	dnaK	grpE	TRUE	0.745	181.000	0.026	0.006	Y	NA
925729	925730	M28_Spy1488	M28_Spy1489	grpE	hrcA	TRUE	0.921	3.000	0.051	1.000	N	NA
925730	925731	M28_Spy1489	M28_Spy1490	hrcA		FALSE	0.184	135.000	0.009	1.000	N	NA
925731	925732	M28_Spy1490	M28_Spy1491			TRUE	0.949	-3.000	0.174	1.000	N	NA
925732	925733	M28_Spy1491	M28_Spy1492			TRUE	0.935	-10.000	0.174	1.000	N	NA
925733	925734	M28_Spy1492	M28_Spy1493			FALSE	0.023	392.000	0.000	1.000		NA
925734	925735	M28_Spy1493	M28_Spy1494			FALSE	0.067	210.000	0.000	NA		NA
925735	925736	M28_Spy1494	M28_Spy1495		gatB	TRUE	0.840	-3.000	0.000	NA		NA
925736	925737	M28_Spy1495	M28_Spy1496	gatB	gatA	TRUE	0.999	0.000	0.492	0.002	Y	NA
925737	925738	M28_Spy1496	M28_Spy1497	gatA	gatC	TRUE	0.999	0.000	0.643	0.002	Y	NA
925738	925739	M28_Spy1497	M28_Spy1498	gatC		FALSE	0.095	232.000	0.002	1.000		NA
925739	925740	M28_Spy1498	M28_Spy1499			TRUE	0.956	-28.000	0.000	0.001		NA
925740	925741	M28_Spy1499	M28_Spy1500			FALSE	0.020	444.000	0.000	1.000		NA
925741	925742	M28_Spy1500	M28_Spy1501		codY	FALSE	0.250	144.000	0.083	1.000	N	NA
925742	925743	M28_Spy1501	M28_Spy1502	codY		FALSE	0.178	155.000	0.015	1.000	N	NA
925747	925748	M28_Spy1506	M28_Spy1507			TRUE	0.801	13.000	0.000	NA		NA
925748	925749	M28_Spy1507	M28_Spy1508			TRUE	0.604	29.000	0.000	NA		NA
925749	925750	M28_Spy1508	M28_Spy1509		recG	FALSE	0.026	293.000	0.000	1.000	N	NA
925752	925753	M28_Spy1511	M28_Spy1512			TRUE	0.953	-63.000	0.429	1.000		NA
925753	925754	M28_Spy1512	M28_Spy1513			TRUE	0.987	-3.000	0.562	NA		NA
925754	925755	M28_Spy1513	M28_Spy1514			TRUE	0.939	-3.000	0.081	NA		NA
925755	925756	M28_Spy1514	M28_Spy1515			TRUE	0.991	-40.000	0.576	0.006	N	NA
925756	925757	M28_Spy1515	M28_Spy1516		fhuC	TRUE	0.917	-3.000	0.047	1.000	N	NA
925757	925758	M28_Spy1516	M28_Spy1517	fhuC		TRUE	0.996	-3.000	0.657	1.000	Y	NA
925758	925759	M28_Spy1517	M28_Spy1518			TRUE	0.996	-25.000	0.877	1.000	Y	NA
925759	925760	M28_Spy1518	M28_Spy1519		shp	TRUE	0.902	-49.000	0.182	NA		NA
925760	925761	M28_Spy1519	M28_Spy1520	shp		FALSE	0.333	197.000	0.273	NA		NA
925761	925762	M28_Spy1520	M28_Spy1521		isp2	FALSE	0.018	484.000	0.000	NA		NA
925762	925763	M28_Spy1521	M28_Spy1522	isp2	acpS	FALSE	0.295	87.000	0.022	NA		NA
925763	925764	M28_Spy1522	M28_Spy1523	acpS	alr	TRUE	0.931	-3.000	0.093	1.000	N	NA
925764	925765	M28_Spy1523	M28_Spy1524	alr	secA	FALSE	0.183	116.000	0.008	1.000	N	NA
925765	925766	M28_Spy1524	M28_Spy1525	secA	pmi	FALSE	0.227	134.000	0.042	1.000	N	NA
925766	925767	M28_Spy1525	M28_Spy1526	pmi	scrK	TRUE	0.795	95.000	0.333	1.000	Y	NA
925767	925768	M28_Spy1526	M28_Spy1527	scrK	endoS	FALSE	0.083	192.000	0.000	1.000		NA
925768	925769	M28_Spy1527	M28_Spy1528	endoS		TRUE	0.716	-30.000	0.000	NA		NA
925769	925770	M28_Spy1528	M28_Spy1529		scrA	TRUE	0.447	43.000	0.000	NA		NA
925771	925772	M28_Spy1530	M28_Spy1531	scrB	scrR	TRUE	0.986	5.000	0.571	1.000	N	NA
925773	925774	M28_Spy1532	M28_Spy1533	nusB		TRUE	0.945	-25.000	0.265	NA		NA
925774	925775	M28_Spy1533	M28_Spy1534		efp	TRUE	0.628	46.000	0.031	NA		NA
925775	925776	M28_Spy1534	M28_Spy1535	efp	comEB	FALSE	0.208	88.000	0.005	1.000	N	NA
925776	925777	M28_Spy1535	M28_Spy1536	comEB		TRUE	0.688	34.000	0.018	1.000	N	NA
925777	925778	M28_Spy1536	M28_Spy1537		uvrA	FALSE	0.266	77.000	0.008	1.000	N	NA
925779	925780	M28_Spy1538	M28_Spy1539	corA		FALSE	0.289	133.000	0.072	NA		NA
925781	925782	M28_Spy1540	M28_Spy1541	rpsR	ssb2.2	FALSE	0.158	165.000	0.012	1.000	N	NA
925782	925783	M28_Spy1541	M28_Spy1542	ssb2.2	rpsF	TRUE	0.790	22.000	0.012	1.000	N	NA
925783	925784	M28_Spy1542	M28_Spy1543	rpsF		FALSE	0.094	173.000	0.000	NA		NA
925785	925786	M28_Spy1544	M28_Spy1545	mutY		FALSE	0.300	67.000	0.002	1.000	N	NA
925786	925787	M28_Spy1545	M28_Spy1546			TRUE	0.787	-13.000	0.000	NA		NA
925788	925789	M28_Spy1547	M28_Spy1548	trx.2		TRUE	0.723	39.000	0.053	1.000		NA
925789	925790	M28_Spy1548	M28_Spy1549		mutS2	TRUE	0.913	1.000	0.005	1.000		NA
925790	925791	M28_Spy1549	M28_Spy1550	mutS2		TRUE	0.792	32.000	0.070	1.000		NA
925791	925792	M28_Spy1550	M28_Spy1551			TRUE	0.925	3.000	0.019	NA		NA
925793	925794	M28_Spy1552	M28_Spy1553		spi	TRUE	0.836	-55.000	0.080	1.000	N	NA
925794	925795	M28_Spy1553	M28_Spy1554	spi	recD	TRUE	0.524	58.000	0.099	1.000	N	NA
925795	925796	M28_Spy1554	M28_Spy1555	recD		FALSE	0.310	91.000	0.050	NA		NA
925799	925800	M28_Spy1558	M28_Spy1559			TRUE	0.963	-15.000	0.326	NA		NA
925802	925803	M28_Spy1561	M28_Spy1562	glpF.2		FALSE	0.214	71.000	0.000	NA		NA
925803	925804	M28_Spy1562	M28_Spy1563		norA	FALSE	0.083	186.000	0.000	NA		NA
925805	925806	M28_Spy1564	M28_Spy1565	srv	pepXP	TRUE	0.871	22.000	0.081	1.000		NA
925808	925809	M28_Spy1567	M28_Spy1568			FALSE	0.126	193.000	0.002	NA		NA
925810	925811	M28_Spy1569	M28_Spy1570		dnaQ	FALSE	0.303	147.000	0.156	1.000	N	NA
925811	925812	M28_Spy1570	M28_Spy1571	dnaQ		TRUE	0.927	10.000	0.057	NA		NA
925812	925813	M28_Spy1571	M28_Spy1572			FALSE	0.111	153.000	0.000	NA		NA
925813	925814	M28_Spy1572	M28_Spy1573			TRUE	0.840	-3.000	0.000	NA		NA
925814	925815	M28_Spy1573	M28_Spy1574			TRUE	0.776	47.000	0.000	0.021		NA
925815	925816	M28_Spy1574	M28_Spy1575			TRUE	0.840	-3.000	0.000	NA		NA
925816	925817	M28_Spy1575	M28_Spy1576			TRUE	0.724	102.000	0.600	NA		NA
925819	925820	M28_Spy1578	M28_Spy1579	deoC	nupC	TRUE	0.971	30.000	0.333	1.000	Y	NA
925820	925821	M28_Spy1579	M28_Spy1580	nupC	udp	TRUE	0.976	9.000	0.015	1.000	Y	NA
925822	925823	M28_Spy1581	M28_Spy1582	crgR	rpsN2	FALSE	0.046	221.000	0.000	1.000	N	NA
925824	925825	M28_Spy1583	M28_Spy1584			TRUE	0.808	-10.000	0.000	1.000		NA
925825	925826	M28_Spy1584	M28_Spy1585			TRUE	0.732	-28.000	0.000	1.000		NA
925827	925828	M28_Spy1586	M28_Spy1587			TRUE	0.989	2.000	0.576	NA		NA
925829	925830	M28_Spy1588	M28_Spy1589	glnA		TRUE	0.789	38.000	0.179	1.000	N	NA
925830	925831	M28_Spy1589	M28_Spy1590			TRUE	0.545	67.000	0.154	NA		NA
925831	925832	M28_Spy1590	M28_Spy1591		pgk	FALSE	0.072	263.000	0.002	NA		NA
925832	925833	M28_Spy1591	M28_Spy1592	pgk	lppC	FALSE	0.131	193.000	0.003	1.000		NA
925833	925834	M28_Spy1592	M28_Spy1593	lppC		FALSE	0.044	274.000	0.000	1.000		NA
925834	925835	M28_Spy1593	M28_Spy1594			FALSE	0.102	237.000	0.006	1.000		NA
925835	925836	M28_Spy1594	M28_Spy1595		asp	TRUE	0.988	0.000	0.567	NA		NA
925836	925837	M28_Spy1595	M28_Spy1596	asp	rpmB	FALSE	0.240	152.000	0.044	NA		NA
925837	925838	M28_Spy1596	M28_Spy1597	rpmB	fba	FALSE	0.017	382.000	0.000	1.000	N	NA
925838	925839	M28_Spy1597	M28_SpyT0059	fba		FALSE	0.069	207.000	0.000	NA		NA
925839	925840	M28_SpyT0059	M28_Spy1598			FALSE	0.322	54.000	0.000	NA		NA
925840	925841	M28_Spy1598	M28_Spy1599		pyrG	FALSE	0.155	168.000	0.002	1.000		NA
925841	925842	M28_Spy1599	M28_Spy1600	pyrG	rpoE	FALSE	0.089	257.000	0.029	1.000	N	NA
925842	925843	M28_Spy1600	M28_Spy1601	rpoE	ropA	FALSE	0.094	212.000	0.005	1.000	N	NA
925845	925846	M28_Spy1603	M28_Spy1604			TRUE	0.932	14.000	0.149	NA		NA
925846	925847	M28_Spy1604	M28_Spy1605		thiD	TRUE	0.962	-10.000	0.276	NA		NA
925847	925848	M28_Spy1605	M28_Spy1606	thiD		TRUE	0.900	-10.000	0.058	1.000	N	NA
925848	925849	M28_Spy1606	M28_Spy1607		comX.2	FALSE	0.088	185.000	0.000	1.000		NA
925849	925850	M28_Spy1607	M28_SpyT0060	comX.2		TRUE	0.825	-4.000	0.000	NA		NA
925850	925851	M28_SpyT0060	M28_SpyT0061			FALSE	0.174	80.000	0.000	NA		NA
925851	925852	M28_SpyT0061	M28_SpyR0016			TRUE	0.821	11.000	0.000	NA		NA
925852	925853	M28_SpyR0016	M28_SpyR0017			FALSE	0.149	92.000	0.000	NA		NA
925853	925854	M28_SpyR0017	M28_SpyT0062			FALSE	0.034	298.000	0.000	NA		NA
925854	925855	M28_SpyT0062	M28_SpyR0018			FALSE	0.333	53.000	0.000	NA		NA
925858	925859	M28_Spy1610	M28_Spy1611	hsdR	hsdS	TRUE	0.994	13.000	0.087	0.001	Y	NA
925859	925860	M28_Spy1611	M28_Spy1612	hsdS	hsdM	TRUE	0.988	13.000	0.022	0.057	Y	NA
925863	925864	M28_Spy1615	M28_Spy1616	salR		TRUE	0.994	-19.000	0.704	NA	Y	NA
925864	925865	M28_Spy1616	M28_Spy1617		salY	TRUE	0.484	40.000	0.000	NA		NA
925865	925866	M28_Spy1617	M28_Spy1618	salY		TRUE	0.853	2.000	0.000	1.000		NA
925866	925867	M28_Spy1618	M28_Spy1619		salX	TRUE	0.965	-3.000	0.000	0.021		NA
925867	925868	M28_Spy1619	M28_Spy1620	salX	salB	FALSE	0.309	56.000	0.000	NA		NA
925868	925869	M28_Spy1620	M28_Spy1621	salB	salA	FALSE	0.165	82.000	0.000	NA		NA
925869	925870	M28_Spy1621	M28_Spy1622	salA	lacG	FALSE	0.018	503.000	0.000	1.000		NA
925870	925871	M28_Spy1622	M28_Spy1623	lacG	lacE	TRUE	0.569	73.000	0.000	1.000	Y	NA
925871	925872	M28_Spy1623	M28_Spy1624	lacE	lacF	TRUE	0.995	0.000	0.150	0.012	Y	NA
925872	925873	M28_Spy1624	M28_Spy1625	lacF	lacD.2	TRUE	0.990	24.000	0.667	1.000	Y	NA
925873	925874	M28_Spy1625	M28_Spy1626	lacD.2	lacC.2	TRUE	0.992	3.000	0.000	0.002	Y	NA
925874	925875	M28_Spy1626	M28_Spy1627	lacC.2	lacB.2	TRUE	0.790	46.000	0.000	1.000	Y	NA
925875	925876	M28_Spy1627	M28_Spy1628	lacB.2	lacA.2	TRUE	0.963	35.000	0.000	0.002	Y	NA
925877	925878	M28_Spy1629	M28_Spy1630	lacR.2		FALSE	0.015	700.000	0.000	NA		NA
925878	925879	M28_Spy1630	M28_Spy1631			TRUE	0.801	-10.000	0.000	NA		NA
925879	925880	M28_Spy1631	M28_Spy1632			FALSE	0.040	281.000	0.000	NA		NA
925880	925881	M28_Spy1632	M28_Spy1633			FALSE	0.098	361.000	0.000	0.057		NA
925882	925883	M28_Spy1634	M28_Spy1635	rpsI	rplM	TRUE	0.997	21.000	0.601	0.023	Y	NA
925883	925884	M28_Spy1635	M28_Spy1636	rplM		FALSE	0.047	218.000	0.000	1.000	N	NA
925884	925885	M28_Spy1636	M28_Spy1637			TRUE	0.926	-3.000	0.031	NA		NA
925885	925886	M28_Spy1637	M28_Spy1638			FALSE	0.273	103.000	0.031	NA		NA
925886	925887	M28_Spy1638	M28_Spy1639			FALSE	0.287	97.000	0.036	NA		NA
925887	925888	M28_Spy1639	M28_Spy1640			TRUE	0.944	4.000	0.109	NA		NA
925888	925889	M28_Spy1640	M28_Spy1641			TRUE	0.820	20.000	0.003	NA		NA
925889	925890	M28_Spy1641	M28_Spy1642			FALSE	0.076	196.000	0.000	NA		NA
925890	925891	M28_Spy1642	M28_Spy1643		cysS	TRUE	0.938	-7.000	0.129	1.000		NA
925891	925892	M28_Spy1643	M28_Spy1644	cysS		TRUE	0.726	28.000	0.002	NA		NA
925892	925893	M28_Spy1644	M28_Spy1645			TRUE	0.801	13.000	0.000	NA		NA
925893	925894	M28_Spy1645	M28_Spy1646		cysE	FALSE	0.078	194.000	0.000	NA		NA
925894	925895	M28_Spy1646	M28_Spy1647	cysE		TRUE	0.938	9.000	0.097	NA		NA
925895	925896	M28_Spy1647	M28_Spy1648			TRUE	0.897	-7.000	0.009	NA		NA
925896	925897	M28_Spy1648	M28_Spy1649			FALSE	0.030	280.000	0.000	1.000	N	NA
925897	925898	M28_Spy1649	M28_Spy1650			TRUE	0.928	10.000	0.056	1.000		NA
925898	925899	M28_Spy1650	M28_Spy1651			TRUE	0.968	27.000	0.241	0.019		NA
925899	925900	M28_Spy1651	M28_Spy1652			TRUE	0.958	-28.000	0.048	0.012	N	NA
925900	925901	M28_Spy1652	M28_Spy1653			FALSE	0.332	136.000	0.143	NA		NA
925901	925902	M28_Spy1653	M28_Spy1654			TRUE	0.850	-16.000	0.002	NA		NA
925902	925903	M28_Spy1654	M28_Spy1655			FALSE	0.105	158.000	0.000	NA		NA
925904	925905	M28_Spy1656	M28_Spy1657		def	FALSE	0.125	126.000	0.000	NA		NA
925906	925907	M28_Spy1658	M28_Spy1659			TRUE	0.590	131.000	0.414	1.000		NA
925907	925908	M28_Spy1659	M28_Spy1660		polC	FALSE	0.284	80.000	0.020	1.000	N	NA
925908	925909	M28_Spy1660	M28_Spy1661	polC	proS	FALSE	0.274	254.000	0.070	0.043	N	NA
925909	925910	M28_Spy1661	M28_Spy1662	proS		FALSE	0.172	198.000	0.095	1.000	N	NA
925910	925911	M28_Spy1662	M28_Spy1663		cdsA	FALSE	0.339	73.000	0.040	1.000	N	NA
925911	925912	M28_Spy1663	M28_Spy1664	cdsA	uppS	TRUE	0.978	13.000	0.113	1.000	Y	NA
925912	925913	M28_Spy1664	M28_Spy1665	uppS	yajC	FALSE	0.091	219.000	0.007	NA	N	NA
925913	925914	M28_Spy1665	M28_Spy1666	yajC		FALSE	0.168	116.000	0.006	NA	N	NA
925914	925915	M28_Spy1666	M28_Spy1668		pulA	FALSE	0.090	115.000	0.000	NA	N	NA
925917	925918	M28_Spy1669	M28_Spy1670	dexB	msmK	TRUE	0.671	108.000	0.171	1.000	Y	NA
925918	925919	M28_Spy1670	M28_Spy1671	msmK	lrp	FALSE	0.077	298.000	0.071	1.000	N	NA
925921	925922	M28_Spy1673	M28_Spy1674		relA	TRUE	0.929	15.000	0.177	1.000	N	NA
925922	925923	M28_Spy1674	M28_Spy1675	relA	sclA	FALSE	0.058	240.000	0.000	1.000		NA
925925	925926	M28_Spy1677	M28_Spy1678			TRUE	0.866	62.000	0.610	1.000		NA
925926	925927	M28_Spy1678	M28_Spy1679			FALSE	0.027	357.000	0.000	NA		NA
925927	925928	M28_Spy1679	M28_Spy1680			TRUE	0.968	0.000	0.227	NA		NA
925928	925929	M28_Spy1680	M28_Spy1681			FALSE	0.374	70.000	0.013	NA		NA
925930	925931	M28_Spy1682	M28_Spy1683		trpG	TRUE	0.906	33.000	0.009	1.000	Y	NA
925931	925932	M28_Spy1683	M28_Spy1684	trpG		TRUE	0.715	33.000	0.035	1.000	N	NA
925932	925933	M28_Spy1684	M28_SpyT0063			FALSE	0.038	286.000	0.000	NA		NA
925933	925934	M28_SpyT0063	M28_Spy1685			FALSE	0.139	99.000	0.000	NA		NA
925934	925935	M28_Spy1685	M28_Spy1686		flaR	TRUE	0.564	55.000	0.062	1.000		NA
925935	925936	M28_Spy1686	M28_Spy1687	flaR	smeZ	FALSE	0.054	249.000	0.000	1.000		NA
925938	925939	M28_Spy1689	M28_Spy1690	dppA	dppB	TRUE	0.689	113.000	0.000	0.031	Y	NA
925939	925940	M28_Spy1690	M28_Spy1691	dppB	dppC	TRUE	0.999	-3.000	1.000	0.031	Y	NA
925940	925941	M28_Spy1691	M28_Spy1692	dppC	dppD	TRUE	0.990	12.000	0.333	1.000	Y	NA
925941	925942	M28_Spy1692	M28_Spy1693	dppD	dppE	TRUE	0.998	-16.000	0.750	0.020	Y	NA
925943	925944	M28_Spy1694	M28_Spy1695			FALSE	0.097	169.000	0.000	NA		NA
925944	925945	M28_Spy1695	M28_Spy1696		lmb	TRUE	0.801	13.000	0.000	NA		NA
925945	925946	M28_Spy1696	M28_Spy1697	lmb		FALSE	0.184	78.000	0.000	NA		NA
925946	925947	M28_Spy1697	M28_Spy1698			TRUE	0.774	-16.000	0.000	NA		NA
925947	925948	M28_Spy1698	M28_Spy1699			FALSE	0.043	277.000	0.000	1.000		NA
925948	925949	M28_Spy1699	M28_Spy1700		scpA	FALSE	0.394	97.000	0.000	0.062		NA
925949	925950	M28_Spy1700	M28_Spy1701	scpA		FALSE	0.105	335.000	0.000	0.062		NA
925950	925951	M28_Spy1701	M28_Spy1702			FALSE	0.191	286.000	0.000	0.011		NA
925951	925952	M28_Spy1702	M28_Spy1703			FALSE	0.273	225.000	0.000	0.011		NA
925952	925953	M28_Spy1703	M28_Spy1704		mga	FALSE	0.080	190.000	0.000	NA		NA
925955	925956	M28_Spy1706	M28_Spy1707		isp	TRUE	0.888	78.000	1.000	NA		NA
925956	925957	M28_Spy1707	M28_Spy1708	isp	ihk	TRUE	0.436	102.000	0.200	1.000		NA
925957	925958	M28_Spy1708	M28_Spy1709	ihk	irr	TRUE	0.995	-3.000	0.500	1.000	Y	NA
925958	925959	M28_Spy1709	M28_Spy1710	irr		TRUE	0.474	94.000	0.267	1.000	N	NA
925959	925960	M28_Spy1710	M28_Spy1711			TRUE	0.992	13.000	0.467	1.000	Y	NA
925960	925961	M28_Spy1711	M28_Spy1712			TRUE	0.966	-13.000	0.385	NA	N	NA
925961	925962	M28_Spy1712	M28_Spy1713			FALSE	0.132	434.000	0.333	NA		NA
925962	925963	M28_Spy1713	M28_Spy1714			FALSE	0.116	149.000	0.000	NA		NA
925963	925964	M28_Spy1714	M28_Spy1715		sfbX	FALSE	0.120	142.000	0.000	NA		NA
925964	925965	M28_Spy1715	M28_Spy1716	sfbX	sof	FALSE	0.366	180.000	0.000	0.011		NA
925967	925968	M28_Spy1718	M28_Spy1719			TRUE	0.567	32.000	0.000	NA		NA
925968	925969	M28_Spy1719	M28_Spy1720			FALSE	0.131	108.000	0.000	NA		NA
925969	925970	M28_Spy1720	M28_Spy1721		speB	TRUE	0.979	2.000	0.000	0.001		NA
925970	925971	M28_Spy1721	M28_Spy1722	speB		FALSE	0.043	272.000	0.000	NA		NA
925972	925973	M28_Spy1723	M28_Spy1724		rgg	FALSE	0.039	284.000	0.000	NA		NA
925975	925976	M28_Spy1726	M28_Spy1727			FALSE	0.112	152.000	0.000	NA		NA
925977	925978	M28_Spy1728	M28_Spy1729	gldA	mipB	TRUE	0.653	57.000	0.211	1.000	N	NA
925978	925979	M28_Spy1729	M28_Spy1730	mipB	pflD	TRUE	0.968	13.000	0.368	1.000	N	NA
925979	925980	M28_Spy1730	M28_Spy1731	pflD		FALSE	0.170	211.000	0.132	1.000	N	NA
925980	925981	M28_Spy1731	M28_Spy1732			TRUE	0.999	10.000	0.889	0.012	Y	NA
925981	925982	M28_Spy1732	M28_Spy1733			TRUE	0.999	7.000	0.889	0.012	Y	NA
925982	925983	M28_Spy1733	M28_Spy1734			FALSE	0.089	288.000	0.091	1.000	N	NA
925983	925984	M28_Spy1734	M28_Spy1735			TRUE	0.980	16.000	0.188	1.000	Y	NA
925986	925987	M28_Spy1737	M28_Spy1738	secE		TRUE	0.904	14.000	0.080	1.000	N	NA
925987	925988	M28_Spy1738	M28_Spy1739		pbp2A	TRUE	0.621	49.000	0.111	1.000	N	NA
925988	925989	M28_Spy1739	M28_Spy1740	pbp2A		TRUE	0.687	39.000	0.062	NA	N	NA
925990	925991	M28_Spy1741	M28_Spy1742			TRUE	0.827	-106.000	0.056	NA		NA
925994	925995	M28_Spy1745	M28_Spy1746			FALSE	0.200	73.000	0.000	NA		NA
925995	925996	M28_Spy1746	M28_Spy1747		groEL	FALSE	0.054	248.000	0.000	1.000		NA
925996	925997	M28_Spy1747	M28_Spy1748	groEL	groES	TRUE	0.979	36.000	0.160	0.006	Y	NA
925997	925998	M28_Spy1748	M28_Spy1749	groES	clpC	TRUE	0.474	178.000	0.036	1.000	Y	NA
925998	925999	M28_Spy1749	M28_Spy1750	clpC	ctsR	TRUE	0.955	0.000	0.188	NA	N	NA
925999	926000	M28_Spy1750	M28_Spy1751	ctsR	csp	FALSE	0.399	196.000	0.013	NA	Y	NA
926000	926001	M28_Spy1751	M28_SpyT0064	csp		FALSE	0.017	513.000	0.000	NA		NA
926002	926003	M28_Spy1752	M28_Spy1753	ahpC	ahpF	TRUE	0.990	21.000	0.551	1.000	Y	NA
926005	926006	M28_Spy1755	M28_Spy1756	hutU		TRUE	0.657	88.000	0.086	1.000	Y	NA
926006	926007	M28_Spy1756	M28_Spy1757			TRUE	0.982	11.000	0.143	1.000	Y	NA
926007	926008	M28_Spy1757	M28_Spy1758		fhs.2	TRUE	0.863	18.000	0.038	1.000	N	NA
926008	926009	M28_Spy1758	M28_Spy1759	fhs.2		TRUE	0.932	1.000	0.038	NA		NA
926009	926010	M28_Spy1759	M28_Spy1760			FALSE	0.153	220.000	0.062	NA		NA
926010	926011	M28_Spy1760	M28_Spy1761		hutH	TRUE	0.972	11.000	0.006	1.000	Y	NA
926011	926012	M28_Spy1761	M28_Spy1762	hutH	hutG	TRUE	0.691	177.000	0.000	0.002	Y	NA
926014	926015	M28_Spy1764	M28_Spy1765	rpsB	tsf	TRUE	0.896	134.000	0.748	1.000	Y	NA
926016	926017	M28_Spy1766	M28_Spy1767	pepO	dexS	FALSE	0.051	208.000	0.000	1.000	N	NA
926017	926018	M28_Spy1767	M28_Spy1768	dexS		TRUE	0.938	68.000	0.650	1.000	Y	NA
926021	926022	M28_Spy1771	M28_Spy1772		yaaA	TRUE	0.615	42.000	0.007	NA		NA
926023	926024	M28_Spy1773	M28_Spy1774	nrdG		TRUE	0.954	-3.000	0.159	1.000		NA
926024	926025	M28_Spy1774	M28_Spy1775			TRUE	0.926	9.000	0.041	1.000		NA
926025	926026	M28_Spy1775	M28_Spy1776			TRUE	0.839	23.000	0.041	NA		NA
926026	926027	M28_Spy1776	M28_Spy1777		nrdD	FALSE	0.206	182.000	0.062	NA		NA
926027	926028	M28_Spy1777	M28_Spy1778	nrdD		FALSE	0.304	97.000	0.057	NA		NA
926028	926029	M28_Spy1778	M28_Spy1779			FALSE	0.021	414.000	0.000	NA		NA
926029	926030	M28_Spy1779	M28_Spy1780			TRUE	0.987	12.000	0.651	NA		NA
926030	926031	M28_Spy1780	M28_Spy1781			TRUE	0.986	-3.000	0.537	NA		NA
926031	926032	M28_Spy1781	M28_Spy1782			FALSE	0.254	114.000	0.032	NA		NA
926032	926033	M28_Spy1782	M28_Spy1783		recA	FALSE	0.050	291.000	0.004	1.000	N	NA
926033	926034	M28_Spy1783	M28_Spy1784	recA	cinA	FALSE	0.353	89.000	0.083	1.000		NA
926034	926035	M28_Spy1784	M28_Spy1785	cinA	tag	FALSE	0.377	69.000	0.011	1.000		NA
926035	926036	M28_Spy1785	M28_Spy1786	tag	ruvA	TRUE	0.978	1.000	0.012	1.000	Y	NA
926036	926037	M28_Spy1786	M28_Spy1787	ruvA	lmrP	TRUE	0.912	2.000	0.005	1.000		NA
926037	926038	M28_Spy1787	M28_Spy1788	lmrP	mutL	TRUE	0.897	11.000	0.006	1.000		NA
926038	926039	M28_Spy1788	M28_Spy1789	mutL		TRUE	0.703	56.000	0.000	1.000	Y	NA
926042	926043	M28_Spy1792	M28_Spy1793			TRUE	0.951	34.000	0.000	0.021	Y	NA
926043	926044	M28_Spy1793	M28_Spy1794			TRUE	0.709	21.000	0.000	NA		NA
926044	926045	M28_Spy1794	M28_Spy1795			TRUE	0.801	13.000	0.000	NA		NA
926045	926046	M28_Spy1795	M28_Spy1796			FALSE	0.041	277.000	0.000	NA		NA
926046	926047	M28_Spy1796	M28_Spy1797			FALSE	0.059	227.000	0.000	NA		NA
926047	926048	M28_Spy1797	M28_Spy1798			FALSE	0.253	200.000	0.000	0.043		NA
926048	926049	M28_Spy1798	M28_Spy1799			TRUE	0.974	24.000	0.667	NA		NA
926049	926050	M28_Spy1799	M28_Spy1800			TRUE	0.751	102.000	0.667	NA		NA
926050	926051	M28_Spy1800	M28_Spy1801			TRUE	0.840	-3.000	0.000	NA		NA
926051	926052	M28_Spy1801	M28_Spy1802			TRUE	0.813	12.000	0.000	NA		NA
926052	926053	M28_Spy1802	M28_Spy1803			TRUE	0.845	3.000	0.000	NA		NA
926053	926054	M28_Spy1803	M28_Spy1804			TRUE	0.991	1.000	0.714	NA		NA
926054	926055	M28_Spy1804	M28_Spy1805			TRUE	0.966	12.000	0.286	NA		NA
926055	926056	M28_Spy1805	M28_Spy1806			FALSE	0.035	294.000	0.000	NA		NA
926056	926057	M28_Spy1806	M28_Spy1807			TRUE	0.840	-3.000	0.000	NA		NA
926057	926058	M28_Spy1807	M28_Spy1808			TRUE	0.837	6.000	0.000	NA		NA
926058	926059	M28_Spy1808	M28_Spy1809			TRUE	0.848	2.000	0.000	NA		NA
926059	926060	M28_Spy1809	M28_Spy1810			FALSE	0.194	74.000	0.000	NA		NA
926060	926061	M28_Spy1810	M28_Spy1811			FALSE	0.021	404.000	0.000	NA		NA
926061	926062	M28_Spy1811	M28_Spy1812			TRUE	0.739	-25.000	0.000	NA		NA
926062	926063	M28_Spy1812	M28_Spy1813			FALSE	0.100	165.000	0.000	NA		NA
926064	926065	M28_Spy1814	M28_Spy1815	mutS		TRUE	0.898	-13.000	0.031	NA		NA
926065	926066	M28_Spy1815	M28_Spy1816		argR2	FALSE	0.259	143.000	0.054	NA		NA
926067	926068	M28_Spy1817	M28_Spy1818	argS	uviB	FALSE	0.403	70.000	0.032	NA		NA
926069	926070	M28_Spy1819	M28_Spy1820			TRUE	0.939	43.000	0.667	NA		NA
926070	926071	M28_Spy1820	M28_Spy1821			TRUE	0.888	-55.000	0.156	NA		NA
926071	926072	M28_Spy1821	M28_Spy1822		aspS	TRUE	0.907	-7.000	0.016	NA		NA
926072	926073	M28_Spy1822	M28_Spy1823	aspS	hisS	TRUE	0.551	287.000	0.161	0.042	Y	NA
926074	926075	M28_Spy1824	M28_Spy1825	rpmF	rpmG	TRUE	0.987	16.000	0.012	0.029	Y	NA
926075	926076	M28_Spy1825	M28_Spy1826	rpmG	cadD	FALSE	0.028	281.000	0.000	NA	N	NA
926076	926077	M28_Spy1826	M28_Spy1827	cadD	cadC	TRUE	0.988	-18.000	0.875	NA	N	NA
926077	926078	M28_Spy1827	M28_Spy1828	cadC		TRUE	0.958	30.000	0.571	1.000		NA
926078	926079	M28_Spy1828	M28_Spy1829			TRUE	0.756	66.000	0.400	1.000		NA
926079	926080	M28_Spy1829	M28_Spy1830			TRUE	0.995	-3.000	1.000	NA		NA
926083	926084	M28_Spy1833	M28_Spy1834			TRUE	0.653	-88.000	0.000	NA		NA
926085	926086	M28_Spy1835	M28_Spy1836			TRUE	0.962	-13.000	0.300	NA		NA
926086	926087	M28_Spy1836	M28_Spy1837			TRUE	0.977	-3.000	0.350	NA		NA
926090	926091	M28_Spy1840	M28_Spy1841			TRUE	0.990	-25.000	1.000	NA		NA
926091	926092	M28_Spy1841	M28_Spy1842			FALSE	0.131	108.000	0.000	NA		NA
926092	926093	M28_Spy1842	M28_Spy1843			TRUE	0.801	-10.000	0.000	NA		NA
926093	926094	M28_Spy1843	M28_Spy1844			FALSE	0.040	281.000	0.000	NA		NA
926094	926095	M28_Spy1844	M28_Spy1845			TRUE	0.990	-25.000	1.000	NA		NA
926095	926096	M28_Spy1845	M28_Spy1846			TRUE	0.977	-16.000	0.500	NA		NA
926096	926097	M28_Spy1846	M28_Spy1847			TRUE	0.840	-3.000	0.000	NA		NA
926097	926098	M28_Spy1847	M28_Spy1848			TRUE	0.840	-3.000	0.000	NA		NA
926098	926099	M28_Spy1848	M28_Spy1849			FALSE	0.150	91.000	0.000	NA		NA
926099	926100	M28_Spy1849	M28_Spy1850			TRUE	0.791	14.000	0.000	NA		NA
926100	926101	M28_Spy1850	M28_Spy1851			TRUE	0.739	-25.000	0.000	NA		NA
926101	926102	M28_Spy1851	M28_Spy1852			TRUE	0.848	2.000	0.000	NA		NA
926102	926103	M28_Spy1852	M28_Spy1853			TRUE	0.837	6.000	0.000	NA		NA
926103	926104	M28_Spy1853	M28_Spy1854			FALSE	0.037	287.000	0.000	NA		NA
926104	926105	M28_Spy1854	M28_Spy1855			TRUE	0.974	-10.000	0.400	NA		NA
926105	926106	M28_Spy1855	M28_Spy1856			TRUE	0.978	10.000	0.400	NA		NA
926106	926107	M28_Spy1856	M28_Spy1857			TRUE	0.650	-91.000	0.000	NA		NA
926107	926108	M28_Spy1857	M28_Spy1858			TRUE	0.840	-3.000	0.000	NA		NA
926108	926109	M28_Spy1858	M28_Spy1859			TRUE	0.813	12.000	0.000	NA		NA
926109	926110	M28_Spy1859	M28_Spy1860			FALSE	0.061	221.000	0.000	NA		NA
926110	926111	M28_Spy1860	M28_Spy1861			TRUE	0.738	51.000	0.222	NA		NA
926111	926112	M28_Spy1861	M28_Spy1862			TRUE	0.947	16.000	0.222	NA		NA
926113	926114	M28_Spy1863	M28_Spy1864			FALSE	0.281	180.000	0.000	0.054		NA
926115	926116	M28_Spy1865	M28_Spy1866	rpsD		FALSE	0.015	730.000	0.000	NA		NA
926116	926117	M28_Spy1866	M28_Spy1867		holB	TRUE	0.897	-13.000	0.030	NA		NA
926117	926118	M28_Spy1867	M28_Spy1868	holB	rplI	TRUE	0.864	21.000	0.100	1.000	N	NA
926118	926119	M28_Spy1868	M28_Spy1869	rplI		TRUE	0.935	-3.000	0.119	1.000	N	NA
926119	926120	M28_Spy1869	M28_Spy1870		gidA	TRUE	0.705	30.000	0.011	1.000	N	NA
926120	926121	M28_Spy1870	M28_Spy1871	gidA		FALSE	0.209	124.000	0.005	1.000		NA
926121	926122	M28_Spy1871	M28_Spy1872		trmU	FALSE	0.025	776.000	0.003	1.000		NA
926123	926124	M28_Spy1873	M28_Spy1874	sdhB	sdhA	TRUE	0.996	12.000	0.221	0.001	Y	NA
926125	926126	M28_Spy1875	M28_Spy1876		cbiQ	FALSE	0.025	372.000	0.000	1.000		NA
926126	926127	M28_Spy1876	M28_Spy1877	cbiQ	cbiO2	TRUE	0.981	-7.000	0.136	1.000	Y	NA
926127	926128	M28_Spy1877	M28_Spy1878	cbiO2	cbiO1	TRUE	0.998	-24.000	0.713	0.020	Y	NA
926128	926129	M28_Spy1878	M28_Spy1879	cbiO1		TRUE	0.793	-49.000	0.015	1.000	N	NA
926129	926130	M28_Spy1879	M28_Spy1880			TRUE	0.919	14.000	0.077	1.000		NA
926130	926131	M28_Spy1880	M28_Spy1881			TRUE	0.691	50.000	0.156	1.000		NA
926131	926132	M28_Spy1881	M28_Spy1882			TRUE	0.998	2.000	0.872	0.004		NA
926133	926134	M28_Spy1883	M28_Spy1884		hasA	TRUE	0.880	41.000	0.000	0.001		NA
926134	926135	M28_Spy1884	M28_Spy1885	hasA	hasB	TRUE	0.911	36.000	0.048	1.000	Y	NA
926135	926136	M28_Spy1885	M28_Spy1886	hasB	hasC	FALSE	0.335	182.000	0.000	1.000	Y	NA
926136	926137	M28_Spy1886	M28_Spy1887	hasC		FALSE	0.040	284.000	0.000	1.000		NA
926137	926138	M28_Spy1887	M28_Spy1888		recF	TRUE	0.966	2.000	0.209	1.000		NA
926139	926140	M28_Spy1889	M28_Spy1890		guaB	FALSE	0.054	203.000	0.000	1.000	N	NA
926140	926141	M28_Spy1890	M28_Spy1891	guaB	trsA	FALSE	0.041	308.000	0.002	1.000	N	NA
926141	926142	M28_Spy1891	M28_Spy1892	trsA		FALSE	0.223	92.000	0.002	NA		NA
926143	926144	M28_Spy1893	M28_Spy1894			FALSE	0.339	79.000	0.027	NA		NA
926144	926145	M28_Spy1894	M28_Spy1895			FALSE	0.324	83.000	0.040	NA		NA
926146	926147	M28_SpyT0065	M28_SpyT0066			TRUE	0.545	34.000	0.000	NA		NA
926147	926148	M28_SpyT0066	M28_Spy1896			FALSE	0.077	195.000	0.000	NA		NA
926151	926152	M28_Spy1898	M28_Spy1899	htrA	parB	TRUE	0.418	59.000	0.015	1.000	N	NA
926152	924176	M28_Spy1899	M28_Spy0001	parB	dnaA	FALSE	0.075	233.000	0.002	1.000	N	NA