MicrobesOnline Operon Predictions for Campylobacter upsaliensis RM3195

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column	Description
Gene1	VIMSS id of 1st gene in pair
SysName1	Systematic name of 1st gene in pair
Name1	Ordinary name of 1st gene in pair
Gene2	VIMSS id of 2nd gene in pair
SysName2	Systematic name of 2nd gene in pair
Name2	Ordinary name of 2nd gene in pair
bOp	Whether the pair is predicted to lie in the same operon or not
pOp	Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep	Distance between the two genes, in base pairs
MOGScore	Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore	Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim	Whether the genes share a COG category or not
ExprSim	Correlation of expression patterns (not available for most genomes)

Gene1	Gene2	SysName1	SysName2	Name1	Name2	bOp	pOp	Sep	MOGScore	GOScore	COGSim	ExprSim
2323696	2323697	CUP0606	CUP0607			TRUE	0.798	10.000	0.000	NA		NA
2323697	2323698	CUP0607	CUP0608			TRUE	0.968	0.000	0.092	1.000		NA
2323699	2323700	CUP0609	CUP0610			TRUE	0.938	-7.000	0.019	1.000	N	NA
2323703	2323704	CUP0613	CUP0614			TRUE	0.820	2.000	0.000	NA		NA
2323704	2323705	CUP0614	CUP0615		abcT3	FALSE	0.088	63.000	0.000	NA		NA
2323705	2323706	CUP0615	CUP0616	abcT3		TRUE	0.993	-3.000	0.306	1.000	Y	NA
2323706	2323707	CUP0616	CUP0617			TRUE	0.990	-13.000	0.257	1.000	Y	NA
2323707	2323708	CUP0617	CUP0618			TRUE	0.991	2.000	0.200	1.000	Y	NA
2323708	2323709	CUP0618	CUP0619			TRUE	0.979	10.000	0.056	1.000	Y	NA
2323710	2323711	CUP_tRNA-Arg-1	CUP0621		tgt	FALSE	0.232	37.000	0.000	NA		NA
2323713	2323714	CUP0623	CUP0624		atoE	FALSE	0.082	66.000	0.000	NA		NA
2323714	2323715	CUP0624	CUP0625	atoE	atoE	TRUE	0.930	-21.000	0.038	0.002		NA
2323715	2323716	CUP0625	CUP0626	atoE		FALSE	0.030	162.000	0.000	NA		NA
2323716	2323717	CUP0626	CUP0627			FALSE	0.031	145.000	0.000	NA		NA
2323717	2323718	CUP0627	CUP0628		scoA	FALSE	0.044	234.000	0.000	0.002		NA
2323718	2323719	CUP0628	CUP0629	scoA	b2224	TRUE	0.844	4.000	0.000	NA		NA
2323719	2323720	CUP0629	CUP0630	b2224	atoB	TRUE	0.514	16.000	0.000	NA		NA
2323720	2323721	CUP0630	CUP0631	atoB	dnaX	FALSE	0.025	214.000	0.000	NA	N	NA
2323721	2323722	CUP0631	CUP0632	dnaX	rho	TRUE	0.927	4.000	0.009	1.000	N	NA
2323723	2323724	CUP0633	CUP0634	fixI		TRUE	0.997	-3.000	0.713	NA	Y	NA
2323726	2323727	CUP0636	CUP0637		rfaD	TRUE	0.967	-9.000	0.093	1.000	N	NA
2323727	2323728	CUP0637	CUP0638	rfaD		TRUE	0.989	-7.000	0.096	0.014	Y	NA
2323728	2323729	CUP0638	CUP0639			TRUE	0.929	-3.000	0.000	1.000	Y	NA
2323730	2323731	CUP0640	CUP0641	lpxD	dnaB	TRUE	0.792	10.000	0.000	1.000	N	NA
2323732	2323733	CUP0642	CUP0643			FALSE	0.050	91.000	0.000	NA		NA
2323733	2323734	CUP0643	CUP0644			FALSE	0.028	199.000	0.000	NA		NA
2323734	2323735	CUP0644	CUP0645			TRUE	0.812	0.000	0.000	NA		NA
2323735	2323736	CUP0645	CUP0646			TRUE	0.809	-3.000	0.000	NA		NA
2323737	2323738	CUP0647	CUP0648			FALSE	0.259	34.000	0.000	NA		NA
2323739	2323740	CUP0649	CUP0650			TRUE	0.992	12.000	1.000	NA		NA
2323740	2323741	CUP0650	CUP0651			TRUE	0.994	10.000	0.750	NA		NA
2323742	2323743	CUP0652	CUP_tRNA-Ile-1			FALSE	0.051	90.000	0.000	NA		NA
2323743	2323744	CUP_tRNA-Ile-1	CUP_tRNA-Ala-1			TRUE	0.846	8.000	0.000	NA		NA
2323744	2323745	CUP_tRNA-Ala-1	CUP_Cu16SA		rrsA	FALSE	0.037	114.000	0.000	NA		NA
2323745	2323746	CUP_Cu16SA	CUP0656	rrsA	ftsK	FALSE	0.024	334.000	0.000	NA		NA
2323746	2323747	CUP0656	CUP0657	ftsK		FALSE	0.281	109.000	0.145	1.000		NA
2323748	2323749	CUP_tRNA-Leu-2	CUP0659		murA	FALSE	0.027	214.000	0.000	NA		NA
2323749	2323750	CUP0659	CUP0660	murA	moeA-3	TRUE	0.941	-3.000	0.024	1.000	N	NA
2323750	2323751	CUP0660	CUP0661	moeA-3		FALSE	0.029	162.000	0.000	1.000	N	NA
2323751	2323752	CUP0661	CUP_tRNA-Gly-1			FALSE	0.084	65.000	0.000	NA		NA
2323752	2323753	CUP_tRNA-Gly-1	CUP0663			FALSE	0.461	20.000	0.000	NA		NA
2323754	2323755	CUP0664	CUP0665	hag		TRUE	0.831	30.000	0.172	1.000		NA
2323755	2323756	CUP0665	CUP0666		prfB	TRUE	0.828	2.000	0.000	1.000		NA
2323756	2323757	CUP0666	CUP0667	prfB		FALSE	0.068	77.000	0.000	1.000		NA
2323757	2323758	CUP0667	CUP0668		ychF	FALSE	0.082	68.000	0.000	1.000		NA
2323758	2323759	CUP0668	CUP0669	ychF	pepA	TRUE	0.943	-3.000	0.026	1.000	N	NA
2323759	2323760	CUP0669	CUP0670	pepA		TRUE	0.984	-3.000	0.250	NA		NA
2323760	2323761	CUP0670	CUP0671		apt	TRUE	0.953	9.000	0.026	NA		NA
2323761	2323762	CUP0671	CUP0672	apt		FALSE	0.023	329.000	0.000	1.000	N	NA
2323762	2323763	CUP0672	CUP0673		aspB	FALSE	0.065	75.000	0.000	1.000	N	NA
2323763	2323764	CUP0673	CUP0674	aspB		FALSE	0.088	63.000	0.000	NA		NA
2323764	2323765	CUP0674	CUP0675			TRUE	0.812	0.000	0.000	NA		NA
2323765	2323766	CUP0675	CUP0676		fliM	TRUE	0.991	-3.000	0.142	0.003	Y	NA
2323766	2323767	CUP0676	CUP0677	fliM	fliA	TRUE	0.972	0.000	0.118	1.000	N	NA
2323767	2323768	CUP0677	CUP0678	fliA		TRUE	0.936	-22.000	0.112	NA		NA
2323768	2323769	CUP0678	CUP0679			TRUE	0.976	10.000	0.159	NA		NA
2323769	2323770	CUP0679	CUP0680			TRUE	0.989	-7.000	0.382	1.000	N	NA
2323770	2323771	CUP0680	CUP0681		folK	TRUE	0.859	-31.000	0.035	1.000	N	NA
2323771	2323772	CUP0681	CUP0682	folK	aroQ	TRUE	0.915	-7.000	0.009	1.000	N	NA
2323773	2323774	CUP0683	CUP0684	orf1	sppA	TRUE	0.940	-12.000	0.035	1.000	N	NA
2323774	2323775	CUP0684	CUP0685	sppA		FALSE	0.178	64.000	0.009	NA		NA
2323776	2323777	CUP0686	CUP0687			TRUE	0.524	-64.000	0.000	NA		NA
2323777	2323778	CUP0687	CUP0688			FALSE	0.200	41.000	0.000	NA		NA
2323778	2323779	CUP0688	CUP0689			TRUE	0.995	-19.000	0.667	0.011	Y	NA
2323779	2323780	CUP0689	CUP0690			FALSE	0.107	153.000	0.022	1.000		NA
2323780	2323781	CUP0690	CUP0691			TRUE	0.988	-7.000	0.209	0.002		NA
2323781	2323782	CUP0691	CUP0692		glcF	TRUE	0.997	-3.000	0.657	1.000	Y	NA
2323782	2323783	CUP0692	CUP0693	glcF	lldP_1	TRUE	0.982	10.000	0.075	1.000	Y	NA
2323784	2323785	CUP0694	CUP0695			TRUE	0.809	-3.000	0.000	NA		NA
2323785	2323786	CUP0695	CUP0696		trmU	TRUE	0.773	-34.000	0.012	NA		NA
2323787	2323788	CUP0697	CUP0698		map	TRUE	0.525	15.000	0.000	1.000	N	NA
2323788	2323789	CUP0698	CUP0699	map	murI	TRUE	0.675	16.000	0.005	1.000	N	NA
2323789	2323790	CUP0699	CUP0700	murI		TRUE	0.864	14.000	0.005	NA	Y	NA
2323790	2323791	CUP0700	CUP0701		nhaA	TRUE	0.934	-51.000	0.211	NA	N	NA
2323791	2323792	CUP0701	CUP0702	nhaA	nhaA	TRUE	0.997	-3.000	0.571	0.005	Y	NA
2323792	2323793	CUP0702	CUP0703	nhaA		FALSE	0.041	106.000	0.000	NA		NA
2323793	2323794	CUP0703	CUP0704		moeZ	FALSE	0.069	73.000	0.000	NA		NA
2323794	2323795	CUP0704	CUP0705	moeZ	thiS	TRUE	0.987	-3.000	0.346	1.000		NA
2323795	2323796	CUP0705	CUP0706	thiS		FALSE	0.370	58.000	0.043	1.000		NA
2323796	2323797	CUP0706	CUP0707		dapE	TRUE	0.894	10.000	0.005	1.000		NA
2323797	2323798	CUP0707	CUP0708	dapE		TRUE	0.946	4.000	0.018	1.000		NA
2323798	2323799	CUP0708	CUP0709			TRUE	0.992	8.000	0.417	1.000		NA
2323800	2323801	CUP0710	CUP0711			TRUE	0.981	-3.000	0.207	1.000	N	NA
2323801	2323802	CUP0711	CUP0712			TRUE	0.998	1.000	0.844	NA	Y	NA
2323803	2323804	CUP0713	CUP0714		comEA	FALSE	0.340	27.000	0.000	NA		NA
2323804	2323805	CUP0714	CUP0715	comEA		FALSE	0.069	73.000	0.000	NA		NA
2323805	2323806	CUP0715	CUP0716			TRUE	0.952	-3.000	0.040	NA		NA
2323808	2323809	CUP0718	CUP0719		mfd	TRUE	0.950	10.000	0.002	1.000	Y	NA
2323809	2323810	CUP0719	CUP0720	mfd		TRUE	0.939	0.000	0.023	NA	N	NA
2323810	2323811	CUP0720	CUP0721			TRUE	0.962	-60.000	0.178	NA	Y	NA
2323811	2323812	CUP0721	CUP0722		folC	TRUE	0.945	-10.000	0.032	1.000	N	NA
2323812	2323813	CUP0722	CUP0723	folC		TRUE	0.961	-13.000	0.104	1.000		NA
2323813	2323814	CUP0723	CUP0724			TRUE	0.984	-16.000	0.455	NA		NA
2323814	2323815	CUP0724	CUP0725		leuS	TRUE	0.949	-3.000	0.031	NA		NA
2323815	2323816	CUP0725	CUP0726	leuS		TRUE	0.895	10.000	0.008	1.000	N	NA
2323816	2323817	CUP0726	CUP0727		secD	TRUE	0.996	0.000	0.436	0.002	Y	NA
2323817	2323818	CUP0727	CUP0728	secD	yajC	TRUE	0.984	-7.000	0.068	NA	Y	NA
2323820	2323821	CUP0730	CUP0731		ribF	TRUE	0.978	-10.000	0.051	1.000	Y	NA
2323821	2323822	CUP0731	CUP0732	ribF	tly	TRUE	0.841	-34.000	0.029	1.000	N	NA
2323822	2323823	CUP0732	CUP0733	tly	ligA	TRUE	0.921	0.000	0.014	1.000	N	NA
2323823	2323824	CUP0733	CUP0734	ligA	folP	TRUE	0.898	-3.000	0.006	1.000	N	NA
2323824	2323825	CUP0734	CUP0735	folP		TRUE	0.958	-3.000	0.054	1.000		NA
2323825	2323826	CUP0735	CUP0736			TRUE	0.957	0.000	0.053	NA		NA
2323826	2323827	CUP0736	CUP0737			TRUE	0.955	-3.000	0.050	NA		NA
2323827	2323828	CUP0737	CUP0738		mutT	TRUE	0.956	0.000	0.051	1.000	N	NA
2323830	2323831	CUP0740	CUP0741			TRUE	0.848	7.000	0.000	NA		NA
2323833	2323834	CUP0743	CUP0744	trxB		FALSE	0.093	72.000	0.000	0.049	N	NA
2323834	2323835	CUP0744	CUP0745			TRUE	0.868	-3.000	0.000	0.022		NA
2323835	2323836	CUP0745	CUP0746			FALSE	0.350	34.000	0.000	0.022		NA
2323836	2323837	CUP0746	CUP0747			TRUE	0.805	-10.000	0.000	1.000		NA
2323837	2323838	CUP0747	CUP0748		ybjZ	TRUE	0.978	2.000	0.152	1.000	N	NA
2323838	2323839	CUP0748	CUP0749	ybjZ		TRUE	0.986	0.000	0.258	0.099	N	NA
2323839	2323840	CUP0749	CUP0750		panD	FALSE	0.123	54.000	0.000	1.000	N	NA
2323840	2323841	CUP0750	CUP0751	panD	hemG	FALSE	0.252	34.000	0.000	1.000	N	NA
2323841	2323842	CUP0751	CUP0752	hemG		TRUE	0.961	-3.000	0.068	1.000	N	NA
2323842	2323843	CUP0752	CUP0753			TRUE	0.538	-52.000	0.000	NA		NA
2323843	2323844	CUP0753	CUP0754			TRUE	0.620	-25.000	0.000	NA		NA
2323844	2323845	CUP0754	CUP0755			TRUE	0.980	-13.000	0.280	1.000		NA
2323845	2323846	CUP0755	CUP0756		algI	TRUE	0.984	0.000	0.244	NA		NA
2323846	2323847	CUP0756	CUP0757	algI	pfr	TRUE	0.743	24.000	0.047	NA	N	NA
2323848	2323849	CUP0758	CUP0759			FALSE	0.223	38.000	0.000	NA		NA
2323849	2323850	CUP0759	CUP0760		aroB	FALSE	0.241	37.000	0.000	1.000		NA
2323850	2323851	CUP0760	CUP0761	aroB		TRUE	0.952	-3.000	0.041	1.000	N	NA
2323851	2323852	CUP0761	CUP0762			TRUE	0.963	-7.000	0.063	1.000	N	NA
2323852	2323853	CUP0762	CUP0763		ftsH_1	TRUE	0.961	0.000	0.067	1.000	N	NA
2323853	2323854	CUP0763	CUP0764	ftsH_1	thiD	TRUE	0.709	11.000	0.000	1.000	N	NA
2323854	2323855	CUP0764	CUP0765	thiD	thiE	TRUE	0.989	-7.000	0.079	0.005	Y	NA
2323855	2323856	CUP0765	CUP0766	thiE	hemD	TRUE	0.949	-22.000	0.032	1.000	Y	NA
2323857	2323858	CUP0767	CUP0768		hemE	TRUE	0.927	-3.000	0.017	1.000	N	NA
2323858	2323859	CUP0768	CUP0769	hemE		FALSE	0.472	18.000	0.000	1.000	N	NA
2323859	2323860	CUP0769	CUP0770			FALSE	0.045	98.000	0.000	1.000	N	NA
2323860	2323861	CUP0770	CUP0771			TRUE	0.885	-6.000	0.000	0.027		NA
2323861	2323862	CUP0771	CUP0772			TRUE	0.796	-10.000	0.000	NA		NA
2323862	2323863	CUP0772	CUP0773			TRUE	0.553	-37.000	0.000	NA		NA
2323863	2323864	CUP0773	CUP0774		secA	FALSE	0.280	32.000	0.000	NA		NA
2323866	2323867	CUP0776	CUP0777			TRUE	0.977	13.000	0.529	NA		NA
2323870	2323871	CUP0780	CUP0781			TRUE	0.760	-13.000	0.000	NA		NA
2323872	2323873	CUP0782	CUP0783		mraW	FALSE	0.182	94.000	0.031	NA		NA
2323874	2323875	CUP0784	CUP0785		ftsA	TRUE	0.967	11.000	0.184	1.000		NA
2323876	2323877	CUP0786	CUP0787	lysA		TRUE	0.899	11.000	0.021	1.000		NA
2323877	2323878	CUP0787	CUP0788		pth	TRUE	0.957	3.000	0.031	1.000		NA
2323878	2323879	CUP0788	CUP0789	pth		TRUE	0.996	-3.000	0.496	0.049	Y	NA
2323879	2323880	CUP0789	CUP0790		tal	FALSE	0.258	58.000	0.017	1.000	N	NA
2323880	2323881	CUP0790	CUP0791	tal	serB	TRUE	0.947	0.000	0.029	1.000	N	NA
2323881	2323882	CUP0791	CUP0792	serB	cheW	TRUE	0.923	0.000	0.015	1.000	N	NA
2323882	2323883	CUP0792	CUP0793	cheW	cheA	TRUE	0.993	4.000	0.137	0.015	Y	NA
2323883	2323884	CUP0793	CUP0794	cheA		TRUE	0.993	4.000	0.147	0.008	Y	NA
2323884	2323885	CUP0794	CUP0795			TRUE	0.880	14.000	0.065	NA		NA
2323885	2323886	CUP0795	CUP0796			TRUE	0.920	0.000	0.012	NA		NA
2323886	2323887	CUP0796	CUP0797		lpxB	TRUE	0.948	10.000	0.042	1.000	N	NA
2323887	2323888	CUP0797	CUP0798	lpxB		TRUE	0.817	-3.000	0.000	1.000		NA
2323888	2323889	CUP0798	CUP0799			TRUE	0.880	-7.000	0.000	0.016		NA
2323889	2323890	CUP0799	CUP0800		res	TRUE	0.994	-10.000	0.667	0.077	N	NA
2323893	2323894	CUP0803	CUP0804	surE		TRUE	0.960	2.000	0.051	1.000		NA
2323894	2323895	CUP0804	CUP0805			FALSE	0.056	88.000	0.000	1.000		NA
2323897	2323898	CUP0807	CUP0808	oadA	pckA	TRUE	0.946	11.000	0.016	1.000	Y	NA
2323898	2323899	CUP0808	CUP0809	pckA	argH	TRUE	0.898	-3.000	0.006	1.000	N	NA
2323900	2323901	CUP0810	CUP0811	hitA		TRUE	0.609	13.000	0.000	1.000		NA
2323901	2323902	CUP0811	CUP0812			FALSE	0.022	465.000	0.000	NA		NA
2323902	2323903	CUP0812	CUP0813			FALSE	0.024	352.000	0.000	NA		NA
2323903	2323904	CUP0813	CUP0814			FALSE	0.054	88.000	0.000	NA		NA
2323904	2323905	CUP0814	CUP0815		uvrB	FALSE	0.027	215.000	0.000	NA		NA
2323906	2323907	CUP0816	CUP0817			TRUE	0.994	-10.000	0.714	NA		NA
2323907	2323908	CUP0817	CUP0818			TRUE	0.969	-22.000	0.316	NA		NA
2323908	2323909	CUP0818	CUP0819		priA	TRUE	0.920	-3.000	0.016	NA	N	NA
2323909	2323910	CUP0819	CUP0820	priA	aat	TRUE	0.792	10.000	0.000	1.000	N	NA
2323910	2323911	CUP0820	CUP0821	aat		FALSE	0.028	162.000	0.000	NA	N	NA
2323911	2323912	CUP0821	CUP0822		grpE	TRUE	0.949	-3.000	0.038	NA	N	NA
2323912	2323913	CUP0822	CUP0823	grpE		TRUE	0.913	20.000	0.029	0.011	Y	NA
2323913	2323914	CUP0823	CUP0824			FALSE	0.054	90.000	0.000	1.000		NA
2323914	2323915	CUP0824	CUP0825			TRUE	0.993	0.000	0.538	1.000		NA
2323915	2323916	CUP0825	CUP0826			FALSE	0.258	115.000	0.143	1.000	N	NA
2323916	2323917	CUP0826	CUP0827		glnH	TRUE	0.979	23.000	0.594	1.000	Y	NA
2323917	2323918	CUP0827	CUP0828	glnH	glnP	TRUE	0.996	2.000	0.400	0.033	Y	NA
2323918	2323919	CUP0828	CUP0829	glnP		TRUE	0.999	3.000	0.947	0.014	Y	NA
2323919	2323920	CUP0829	CUP0830		prsA	FALSE	0.399	77.000	0.029	1.000	Y	NA
2323920	2323921	CUP0830	CUP0831	prsA	nadE	TRUE	0.913	2.000	0.009	1.000	N	NA
2323921	2323922	CUP0831	CUP0832	nadE	lpxK	TRUE	0.909	0.000	0.009	1.000	N	NA
2323922	2323923	CUP0832	CUP0833	lpxK	thrC	TRUE	0.881	-13.000	0.009	1.000	N	NA
2323923	2323924	CUP0833	CUP0834	thrC	kdsB	TRUE	0.927	-3.000	0.017	1.000	N	NA
2323924	2323925	CUP0834	CUP0835	kdsB		TRUE	0.760	-13.000	0.000	NA		NA
2323925	2323926	CUP0835	CUP0836		ftsZ	TRUE	0.597	13.000	0.000	NA		NA
2323927	2323928	CUP0837	CUP0838			TRUE	0.803	-61.000	0.022	1.000		NA
2323928	2323929	CUP0838	CUP0839			TRUE	0.927	0.000	0.016	NA		NA
2323929	2323930	CUP0839	CUP0840		accC	TRUE	0.989	0.000	0.400	NA		NA
2323931	2323932	CUP0841	CUP0842	ftsW	murG	TRUE	0.993	-3.000	0.647	1.000	N	NA
2323933	2323934	CUP0843	CUP0844			TRUE	0.989	0.000	0.400	NA		NA
2323934	2323935	CUP0844	CUP0845		livF	TRUE	0.986	1.000	0.280	1.000	N	NA
2323935	2323936	CUP0845	CUP0846	livF	livG	TRUE	0.994	-13.000	0.381	0.020	Y	NA
2323936	2323937	CUP0846	CUP0847	livG	livM	TRUE	0.991	-3.000	0.200	1.000	Y	NA
2323937	2323938	CUP0847	CUP0848	livM	livH	TRUE	0.998	0.000	0.771	0.033	Y	NA
2323938	2323939	CUP0848	CUP0849	livH	livJ	TRUE	0.933	17.000	0.085	NA	Y	NA
2323939	2323940	CUP0849	CUP0850	livJ	livJ	TRUE	0.999	8.000	1.000	NA	Y	NA
2323940	2323941	CUP0850	CUP0851	livJ		FALSE	0.374	121.000	0.312	NA		NA
2323941	2323942	CUP0851	CUP0852			TRUE	0.963	12.000	0.250	NA		NA
2323942	2323943	CUP0852	CUP0853			FALSE	0.443	54.000	0.062	NA		NA
2323943	2323944	CUP0853	CUP0854		asd	TRUE	0.944	0.000	0.025	NA		NA
2323944	2323945	CUP0854	CUP0855	asd	rrp-2	TRUE	0.956	6.000	0.025	1.000	N	NA
2323946	2323947	CUP0856	CUP0857	ruvB		TRUE	0.942	3.000	0.019	NA		NA
2323947	2323948	CUP0857	CUP0858			FALSE	0.066	76.000	0.000	NA		NA
2323948	2323949	CUP0858	CUP0859		ruvA	TRUE	0.782	-24.000	0.004	1.000		NA
2323949	2323950	CUP0859	CUP0860	ruvA		TRUE	0.872	11.000	0.014	1.000	N	NA
2323950	2323951	CUP0860	CUP0861			TRUE	0.931	0.000	0.018	NA		NA
2323951	2323952	CUP0861	CUP0862			TRUE	0.959	2.000	0.052	NA		NA
2323952	2323953	CUP0862	CUP0863		murF	TRUE	0.971	-10.000	0.129	NA		NA
2323953	2323954	CUP0863	CUP0864	murF		FALSE	0.092	62.000	0.000	NA		NA
2323954	2323955	CUP0864	CUP0865			TRUE	0.992	1.000	0.514	NA		NA
2323955	2323956	CUP0865	CUP0866		ispB	TRUE	0.951	2.000	0.030	NA		NA
2323956	2323957	CUP0866	CUP0867	ispB	hemA	TRUE	0.980	0.000	0.051	1.000	Y	NA
2323957	2323958	CUP0867	CUP0868	hemA	proS	TRUE	0.957	-10.000	0.040	0.056	N	NA
2323958	2323959	CUP0868	CUP0869	proS		TRUE	0.892	-3.000	0.002	1.000		NA
2323959	2323960	CUP0869	CUP0870		drrA	FALSE	0.025	327.000	0.000	1.000		NA
2323960	2323961	CUP0870	CUP0871	drrA		TRUE	0.995	-3.000	0.448	1.000	Y	NA
2323961	2323962	CUP0871	CUP0872		recR	TRUE	0.908	-10.000	0.011	1.000	N	NA
2323963	2323964	CUP0873	CUP0874			TRUE	0.996	0.000	0.844	NA		NA
2323965	2323966	CUP0875	CUP0876	hemC		TRUE	0.961	-3.000	0.009	NA	Y	NA
2323966	2323967	CUP0876	CUP0877			FALSE	0.166	78.000	0.018	NA	N	NA
2323967	2323968	CUP0877	CUP0878			TRUE	0.985	2.000	0.092	NA	Y	NA
2323968	2323969	CUP0878	CUP0879		fliS	TRUE	0.997	10.000	0.608	0.005	Y	NA
2323969	2323970	CUP0879	CUP0880	fliS		TRUE	0.941	-13.000	0.051	NA		NA
2323972	2323973	CUP0882	CUP0883			TRUE	0.796	-10.000	0.000	NA		NA
2323973	2323974	CUP0883	CUP0884			TRUE	0.514	16.000	0.000	NA		NA
2323974	2323975	CUP0884	CUP0885		efp	FALSE	0.121	55.000	0.000	NA		NA
2323975	2323976	CUP0885	CUP0886	efp	uvrA	TRUE	0.807	0.000	0.000	1.000	N	NA
2323976	2323977	CUP0886	CUP0887	uvrA		TRUE	0.809	-3.000	0.000	NA		NA
2323977	2323978	CUP0887	CUP0888			TRUE	0.826	-7.000	0.000	NA		NA
2323979	2323980	CUP0889	CUP_tRNA-Ile-2			FALSE	0.051	90.000	0.000	NA		NA
2323980	2323981	CUP_tRNA-Ile-2	CUP_tRNA-Ala-2			TRUE	0.846	8.000	0.000	NA		NA
2323981	2323982	CUP_tRNA-Ala-2	CUP_Cu16SB		rrsB	FALSE	0.037	114.000	0.000	NA		NA
2323982	2323983	CUP_Cu16SB	CUP0893	rrsB		FALSE	0.024	333.000	0.000	NA		NA
2323983	2323984	CUP0893	CUP0894			FALSE	0.340	27.000	0.000	NA		NA
2323984	2323985	CUP0894	CUP0895			TRUE	0.826	-7.000	0.000	NA		NA
2323985	2323986	CUP0895	CUP0896			TRUE	0.956	-7.000	0.032	1.000		NA
2323986	2323987	CUP0896	CUP0897		guaB	TRUE	0.906	-3.000	0.007	1.000		NA
2323987	2323988	CUP0897	CUP0898	guaB	gatA	TRUE	0.959	4.000	0.032	1.000	N	NA
2323988	2323989	CUP0898	CUP0899	gatA		TRUE	0.904	3.000	0.003	NA		NA
2323989	2323990	CUP0899	CUP0900		ileS	TRUE	0.970	-7.000	0.091	NA		NA
2323991	2323992	CUP0901	CUP0902	cinA	pgsA	FALSE	0.064	80.000	0.000	1.000		NA
2323992	2323993	CUP0902	CUP0903	pgsA		TRUE	0.951	-3.000	0.023	0.062	N	NA
2323993	2323994	CUP0903	CUP0904			FALSE	0.045	98.000	0.000	1.000	N	NA
2323994	2323995	CUP0904	CUP0905		ssb	TRUE	0.957	9.000	0.033	1.000	N	NA
2323995	2323996	CUP0905	CUP0906	ssb	rpsR	TRUE	0.868	13.000	0.034	1.000	N	NA
2323997	2323998	CUP0907	CUP0908			TRUE	0.991	-27.000	1.000	NA		NA
2323998	2323999	CUP0908	CUP0909		ctsT	TRUE	0.992	-16.000	0.800	NA		NA
2323999	2324000	CUP0909	CUP0910	ctsT	proC	TRUE	0.963	-3.000	0.075	NA		NA
2324001	2324002	CUP0911	CUP0912		lon	TRUE	0.800	23.000	0.062	1.000		NA
2324003	2324004	CUP0913	CUP0914			TRUE	0.965	-13.000	0.093	0.044		NA
2324005	2324006	CUP0915	CUP0916			TRUE	0.760	-13.000	0.000	NA		NA
2324006	2324007	CUP0916	CUP0917			FALSE	0.127	54.000	0.000	NA		NA
2324008	2324009	CUP0918	CUP_tRNA-Met-2			FALSE	0.059	82.000	0.000	NA		NA
2324009	2324010	CUP_tRNA-Met-2	CUP_tRNA-Gln-1			TRUE	0.534	15.000	0.000	NA		NA
2324011	2324012	CUP0921	CUP0922	ribBA		FALSE	0.023	379.000	0.000	NA		NA
2324015	2324016	CUP0228	CUP0229		mraY	FALSE	0.067	110.000	0.002	1.000	N	NA
2324017	2324018	CUP0230	CUP0231	gpmA	fabG	FALSE	0.342	50.000	0.018	1.000	N	NA
2324018	2324019	CUP0231	CUP0232	fabG		TRUE	0.831	9.000	0.000	1.000	N	NA
2324019	2324020	CUP0232	CUP0233		pheA	TRUE	0.923	-12.000	0.021	1.000	N	NA
2324021	2324022	CUP0234	CUP0235			FALSE	0.031	161.000	0.000	NA		NA
2324022	2324023	CUP0235	CUP0236			TRUE	0.809	-3.000	0.000	NA		NA
2324023	2324024	CUP0236	CUP0237			TRUE	0.833	3.000	0.000	NA		NA
2324025	2324026	CUP0238	CUP0239		purD	FALSE	0.026	237.000	0.000	NA		NA
2324026	2324027	CUP0239	CUP0240	purD		TRUE	0.929	0.000	0.017	NA		NA
2324027	2324028	CUP0240	CUP0241			TRUE	0.974	-10.000	0.149	NA		NA
2324028	2324029	CUP0241	CUP0242		pnpA	FALSE	0.154	67.000	0.007	1.000	N	NA
2324030	2324031	CUP0243	CUP0244			TRUE	0.812	0.000	0.000	NA		NA
2324031	2324032	CUP0244	CUP0245			FALSE	0.114	99.000	0.014	1.000	N	NA
2324033	2324034	CUP0246	CUP0247			TRUE	0.954	3.000	0.028	NA		NA
2324034	2324035	CUP0247	CUP0248		cdsA	TRUE	0.895	10.000	0.007	NA		NA
2324035	2324036	CUP0248	CUP0249	cdsA	dxr	TRUE	0.994	-3.000	0.372	1.000	Y	NA
2324036	2324037	CUP0249	CUP0250	dxr		TRUE	0.782	-25.000	0.006	1.000		NA
2324037	2324038	CUP0250	CUP0251			TRUE	0.908	-3.000	0.008	1.000		NA
2324038	2324039	CUP0251	CUP0252		ctsG	TRUE	0.914	9.000	0.005	1.000		NA
2324039	2324040	CUP0252	CUP0253	ctsG		TRUE	0.809	-3.000	0.000	NA		NA
2324040	2324041	CUP0253	CUP0254			TRUE	0.548	-39.000	0.000	NA		NA
2324041	2324042	CUP0254	CUP0255			TRUE	0.796	-10.000	0.000	NA		NA
2324043	2324044	CUP0256	CUP0257			TRUE	0.952	0.000	0.035	NA		NA
2324045	2324046	CUP0258	CUP0259	cstA		TRUE	0.961	-22.000	0.229	NA		NA
2324048	2324049	CUP0261	CUP0262		hup-1	FALSE	0.356	93.000	0.167	1.000		NA
2324050	2324051	CUP0263	CUP0264			TRUE	0.980	-3.000	0.192	NA		NA
2324051	2324052	CUP0264	CUP0265			TRUE	0.970	4.000	0.069	NA		NA
2324053	2324054	CUP0266	CUP0267			TRUE	0.950	0.000	0.031	NA		NA
2324054	2324055	CUP0267	CUP0268			TRUE	0.894	0.000	0.005	1.000	N	NA
2324055	2324056	CUP0268	CUP0269			FALSE	0.096	101.000	0.009	1.000	N	NA
2324057	2324058	CUP0270	CUP0271		serA	FALSE	0.427	23.000	0.000	1.000		NA
2324058	2324059	CUP0271	CUP0272	serA		TRUE	0.944	-3.000	0.025	NA		NA
2324059	2324060	CUP0272	CUP0273			TRUE	0.990	5.000	0.343	NA		NA
2324060	2324061	CUP0273	CUP0274		licD	FALSE	0.040	102.000	0.000	NA	N	NA
2324061	2324062	CUP0274	CUP0275	licD	licC	TRUE	0.985	-12.000	0.133	NA	Y	NA
2324062	2324063	CUP0275	CUP0276	licC	licB	TRUE	0.820	0.000	0.000	1.000		NA
2324063	2324064	CUP0276	CUP0277	licB	licA	TRUE	0.809	-3.000	0.000	NA		NA
2324064	2324065	CUP0277	CUP0278	licA	ispH	TRUE	0.927	-9.000	0.000	NA	Y	NA
2324065	2324066	CUP0278	CUP0279	ispH	aroA	TRUE	0.817	-79.000	0.032	1.000	N	NA
2324066	2324067	CUP0279	CUP0280	aroA		TRUE	0.946	-3.000	0.028	1.000	N	NA
2324067	2324068	CUP0280	CUP0281		pheS	TRUE	0.997	-3.000	0.574	0.001	Y	NA
2324069	2324070	CUP0282	CUP0283	thiG		TRUE	0.534	15.000	0.000	NA		NA
2324070	2324071	CUP0283	CUP0284		hypF	TRUE	0.871	-19.000	0.018	NA		NA
2324071	2324072	CUP0284	CUP0285	hypF		FALSE	0.029	173.000	0.000	NA		NA
2324074	2324075	CUP0287	CUP0288			FALSE	0.132	53.000	0.000	NA		NA
2324075	2324076	CUP0288	CUP0289			FALSE	0.022	1095.000	0.000	NA		NA
2324077	2324078	CUP0290	CUP0291	hypA	hypE	TRUE	0.966	0.000	0.080	1.000		NA
2324079	2324080	CUP0292	CUP0293	hypB	hypC	TRUE	0.995	0.000	0.463	NA	Y	NA
2324080	2324081	CUP0293	CUP0294	hypC	hypD	TRUE	0.978	-16.000	0.123	NA	Y	NA
2324081	2324082	CUP0294	CUP0295	hypD		FALSE	0.364	25.000	0.000	NA		NA
2324082	2324083	CUP0295	CUP0296			TRUE	0.974	12.000	0.385	NA		NA
2324083	2324084	CUP0296	CUP0297			FALSE	0.053	91.000	0.000	1.000		NA
2324084	2324085	CUP0297	CUP0298		pyrB	TRUE	0.833	11.000	0.005	1.000	N	NA
2324085	2324086	CUP0298	CUP0299	pyrB	pepF	TRUE	0.900	2.000	0.005	1.000	N	NA
2324086	2324087	CUP0299	CUP0300	pepF		TRUE	0.976	-6.000	0.115	NA		NA
2324087	2324088	CUP0300	CUP0301		uvrD	TRUE	0.945	-3.000	0.026	NA		NA
2324088	2324089	CUP0301	CUP0302	uvrD		TRUE	0.953	-3.000	0.046	1.000	N	NA
2324089	2324090	CUP0302	CUP0303		csrA	TRUE	0.968	-6.000	0.046	0.027	N	NA
2324090	2324091	CUP0303	CUP0304	csrA		TRUE	0.950	-3.000	0.036	1.000	N	NA
2324091	2324092	CUP0304	CUP0305		smpB	TRUE	0.946	-3.000	0.028	1.000	N	NA
2324092	2324093	CUP0305	CUP0306	smpB		FALSE	0.030	167.000	0.000	NA		NA
2324093	2324094	CUP0306	CUP0307			TRUE	0.869	-25.000	0.026	NA		NA
2324094	2324095	CUP0307	CUP0308			FALSE	0.307	30.000	0.000	NA		NA
2324095	2324096	CUP0308	CUP0309			TRUE	0.681	-19.000	0.000	NA		NA
2324097	2324098	CUP0310	CUP0311			TRUE	0.984	-7.000	0.217	NA		NA
2324098	2324099	CUP0311	CUP0312		clpA	TRUE	0.798	10.000	0.000	NA		NA
2324099	2324100	CUP0312	CUP0313	clpA		TRUE	0.993	-3.000	0.596	NA		NA
2324100	2324101	CUP0313	CUP0314			TRUE	0.943	0.000	0.024	NA		NA
2324103	2324104	CUP0316	CUP0317	tlpC-2		TRUE	0.921	12.000	0.077	NA		NA
2324104	2324105	CUP0317	CUP0318		rpmB	FALSE	0.138	69.000	0.004	NA		NA
2324106	2324107	CUP0319	CUP0320	rpe		TRUE	0.985	-3.000	0.279	1.000	N	NA
2324107	2324108	CUP0320	CUP0321		thiC	FALSE	0.067	137.000	0.007	1.000	N	NA
2324108	2324109	CUP0321	CUP0322	thiC		FALSE	0.037	115.000	0.000	NA		NA
2324110	2324111	CUP0323	CUP0324			TRUE	0.635	-24.000	0.000	NA		NA
2324111	2324112	CUP0324	CUP0325		hpkA	TRUE	0.590	-30.000	0.000	NA		NA
2324112	2324113	CUP0325	CUP0326	hpkA	drrA	TRUE	0.997	0.000	0.732	1.000	Y	NA
2324113	2324114	CUP0326	CUP0327	drrA	pstB	TRUE	0.513	33.000	0.016	1.000	N	NA
2324114	2324115	CUP0327	CUP0328	pstB	pstA	TRUE	0.997	9.000	0.428	0.004	Y	NA
2324115	2324116	CUP0328	CUP0329	pstA	pstC	TRUE	0.993	-3.000	0.219	0.004	Y	NA
2324116	2324117	CUP0329	CUP0330	pstC		TRUE	0.827	14.000	0.023	NA		NA
2324118	2324119	CUP0331	CUP0332			TRUE	0.650	-22.000	0.000	NA		NA
2324119	2324120	CUP0332	CUP0333			TRUE	0.715	-16.000	0.000	NA		NA
2324120	2324121	CUP0333	CUP0334			TRUE	0.826	-7.000	0.000	NA		NA
2324121	2324122	CUP0334	CUP0335		bioD	TRUE	0.951	0.000	0.030	1.000		NA
2324124	2324125	CUP0337	CUP0338	bioF		TRUE	0.989	-3.000	0.389	NA		NA
2324125	2324126	CUP0338	CUP0339			TRUE	0.941	-15.000	0.065	NA		NA
2324126	2324127	CUP0339	CUP0340		modA	FALSE	0.299	48.000	0.008	1.000		NA
2324127	2324128	CUP0340	CUP0341	modA		TRUE	0.969	-3.000	0.098	1.000		NA
2324128	2324129	CUP0341	CUP0342		cysT	TRUE	0.976	-7.000	0.122	1.000		NA
2324129	2324130	CUP0342	CUP0343	cysT	modC	TRUE	0.994	3.000	0.286	1.000	Y	NA
2324130	2324131	CUP0343	CUP0344	modC		FALSE	0.199	42.000	0.000	1.000		NA
2324133	2324134	CUP0346	CUP_tRNA-Leu-1			FALSE	0.288	31.000	0.000	NA		NA
2324136	2324137	CUP0349	CUP0350	pdxJ	pdxA	TRUE	0.975	-16.000	0.048	0.001	Y	NA
2324137	2324138	CUP0350	CUP0351	pdxA		FALSE	0.144	50.000	0.000	NA		NA
2324140	2324141	CUP0353	CUP0354		miaB	TRUE	0.950	-3.000	0.033	NA		NA
2324141	2324142	CUP0354	CUP0355	miaB		TRUE	0.914	-16.000	0.029	NA		NA
2324142	2324143	CUP0355	CUP0356			TRUE	0.991	-3.000	0.462	NA		NA
2324143	2324144	CUP0356	CUP0357			TRUE	0.996	-10.000	1.000	NA		NA
2324144	2324145	CUP0357	CUP0358			TRUE	0.989	-10.000	0.448	NA		NA
2324145	2324146	CUP0358	CUP0359			TRUE	0.849	6.000	0.000	NA		NA
2324146	2324147	CUP0359	CUP0360			FALSE	0.034	126.000	0.000	NA		NA
2324147	2324148	CUP0360	CUP0361			TRUE	0.798	10.000	0.000	NA		NA
2324148	2324149	CUP0361	CUP0362			TRUE	0.715	-16.000	0.000	NA		NA
2324149	2324150	CUP0362	CUP0363			TRUE	0.806	10.000	0.000	1.000		NA
2324151	2324152	CUP0364	CUP0365			TRUE	0.921	0.000	0.012	1.000		NA
2324152	2324153	CUP0365	CUP0366		glyS	TRUE	0.903	-3.000	0.008	1.000	N	NA
2324153	2324154	CUP0366	CUP0367	glyS		FALSE	0.342	42.000	0.006	1.000		NA
2324154	2324155	CUP0367	CUP0368			TRUE	0.989	-7.000	0.364	NA		NA
2324155	2324156	CUP0368	CUP0369		kefB	TRUE	0.958	9.000	0.034	NA		NA
2324156	2324157	CUP0369	CUP0370	kefB	hspR	TRUE	0.950	0.000	0.034	1.000	N	NA
2324157	2324158	CUP0370	CUP0371	hspR		TRUE	0.966	12.000	0.282	1.000	N	NA
2324159	2324160	CUP0372	CUP0373	htrA		TRUE	0.631	61.000	0.294	1.000	N	NA
2324160	2324161	CUP0373	CUP0374			TRUE	0.998	-3.000	0.824	1.000	Y	NA
2324161	2324162	CUP0374	CUP0375			FALSE	0.117	55.000	0.000	1.000	N	NA
2324162	2324163	CUP0375	CUP0376			TRUE	0.943	-3.000	0.025	1.000	N	NA
2324163	2324164	CUP0376	CUP0377			TRUE	0.936	-3.000	0.020	1.000		NA
2324164	2324165	CUP0377	CUP0378		flgB	FALSE	0.119	56.000	0.000	1.000		NA
2324165	2324166	CUP0378	CUP0379	flgB	flgC	TRUE	0.998	10.000	0.804	1.000	Y	NA
2324166	2324167	CUP0379	CUP0380	flgC	fliE	TRUE	0.996	7.000	0.271	0.008	Y	NA
2324167	2324168	CUP0380	CUP0381	fliE		TRUE	0.989	7.000	0.303	1.000	N	NA
2324168	2324169	CUP0381	CUP0382			TRUE	0.817	-3.000	0.000	1.000		NA
2324170	2324171	CUP0383	CUP0384		vacB	TRUE	0.943	0.000	0.024	1.000	N	NA
2324172	2324173	CUP0385	CUP0386	ilvC		TRUE	0.928	2.000	0.013	1.000		NA
2324173	2324174	CUP0386	CUP0387		dprA	TRUE	0.946	-7.000	0.022	1.000		NA
2324174	2324175	CUP0387	CUP0388	dprA		TRUE	0.975	-3.000	0.026	1.000	Y	NA
2324175	2324176	CUP0388	CUP0389			TRUE	0.893	-10.000	0.008	NA	N	NA
2324176	2324177	CUP0389	CUP0390			FALSE	0.043	103.000	0.000	NA		NA
2324177	2324178	CUP0390	CUP0391			TRUE	0.994	11.000	1.000	NA		NA
2324180	2324181	CUP0393	CUP0394	glmU	coaBC	TRUE	0.925	-3.000	0.016	1.000	N	NA
2324181	2324182	CUP0394	CUP0395	coaBC		TRUE	0.942	-3.000	0.024	NA		NA
2324182	2324183	CUP0395	CUP0396			TRUE	0.844	4.000	0.000	NA		NA
2324183	2324184	CUP0396	CUP0397		uppS	TRUE	0.807	0.000	0.000	1.000	N	NA
2324184	2324185	CUP0397	CUP0398	uppS		TRUE	0.921	-10.000	0.017	1.000	N	NA
2324185	2324186	CUP0398	CUP0399			TRUE	0.863	-33.000	0.039	1.000		NA
2324186	2324187	CUP0399	CUP0400		truA	TRUE	0.960	0.000	0.059	1.000		NA
2324188	2324189	CUP0401	CUP0402			TRUE	0.769	-13.000	0.000	1.000		NA
2324189	2324190	CUP0402	CUP0403			TRUE	0.956	-3.000	0.056	1.000	N	NA
2324190	2324191	CUP0403	CUP0404			TRUE	0.957	0.000	0.047	1.000		NA
2324191	2324192	CUP0404	CUP0405			TRUE	0.917	-3.000	0.012	NA		NA
2324192	2324193	CUP0405	CUP0406		acnB	FALSE	0.356	26.000	0.000	NA		NA
2324193	2324194	CUP0406	CUP0407	acnB		FALSE	0.038	116.000	0.000	1.000		NA
2324194	2324195	CUP0407	CUP0408		metG	FALSE	0.385	57.000	0.046	1.000		NA
2324195	2324196	CUP0408	CUP0409	metG		TRUE	0.938	10.000	0.024	NA		NA
2324196	2324197	CUP0409	CUP0410		fbp	TRUE	0.996	-7.000	0.778	NA		NA
2324197	2324198	CUP0410	CUP0411	fbp	mobB	TRUE	0.707	-16.000	0.000	1.000	N	NA
2324200	2324201	CUP0413	CUP0414			TRUE	0.986	-3.000	0.323	NA		NA
2324201	2324202	CUP0414	CUP0415			TRUE	0.970	-3.000	0.102	1.000		NA
2324203	2324204	CUP0416	CUP0417	rpmH	rnpA	TRUE	0.995	-3.000	0.787	1.000		NA
2324204	2324205	CUP0417	CUP0418	rnpA		TRUE	0.991	-12.000	0.540	NA		NA
2324205	2324206	CUP0418	CUP0419			TRUE	0.991	1.000	0.461	NA		NA
2324206	2324207	CUP0419	CUP0420			TRUE	0.959	-3.000	0.061	NA		NA
2324207	2324208	CUP0420	CUP0421		trmE	TRUE	0.959	-7.000	0.049	NA		NA
2324208	2324209	CUP0421	CUP0422	trmE	purL	TRUE	0.854	11.000	0.008	1.000		NA
2324209	2324210	CUP0422	CUP0423	purL		TRUE	0.914	-3.000	0.011	1.000	N	NA
2324210	2324211	CUP0423	CUP0424		hprA	TRUE	0.792	10.000	0.000	1.000	N	NA
2324211	2324212	CUP0424	CUP0425	hprA		TRUE	0.932	-10.000	0.021	NA		NA
2324212	2324213	CUP0425	CUP0426			TRUE	0.918	-3.000	0.012	NA		NA
2324213	2324214	CUP0426	CUP0427			TRUE	0.967	9.000	0.065	NA		NA
2324214	2324215	CUP0427	CUP0428			FALSE	0.022	618.000	0.000	NA		NA
2324215	2324216	CUP0428	CUP0429			FALSE	0.026	221.000	0.000	NA		NA
2324216	2324217	CUP0429	CUP0430			FALSE	0.028	194.000	0.000	NA		NA
2324217	2324218	CUP0430	CUP0431			FALSE	0.027	208.000	0.000	NA		NA
2324218	2324219	CUP0431	CUP0432			FALSE	0.036	118.000	0.000	NA		NA
2324219	2324220	CUP0432	CUP0433			TRUE	0.999	-7.000	0.869	0.059	Y	NA
2324221	2324222	CUP0434	CUP0435	queA		TRUE	0.812	0.000	0.000	NA		NA
2324223	2324224	CUP1644	CUP1645		guaA	TRUE	0.829	11.000	0.002	1.000		NA
2324225	2324226	CUP1646	CUP1647		uvrC	TRUE	0.938	-7.000	0.018	NA		NA
2324226	2324227	CUP1647	CUP1648	uvrC		TRUE	0.896	-3.000	0.005	NA		NA
2324227	2324228	CUP1648	CUP1649			FALSE	0.307	30.000	0.000	NA		NA
2324228	2324229	CUP1649	CUP1650			TRUE	0.937	7.000	0.012	NA		NA
2324229	2324230	CUP1650	CUP1651			TRUE	0.985	-13.000	0.400	NA		NA
2324230	2324231	CUP1651	CUP1652			TRUE	0.991	-6.000	0.400	NA		NA
2324231	2324232	CUP1652	CUP1653			FALSE	0.061	80.000	0.000	NA		NA
2324233	2324234	CUP1654	CUP1655			FALSE	0.268	58.000	0.017	NA		NA
2324235	2324236	CUP1656	CUP1657			TRUE	0.812	0.000	0.000	NA		NA
2324238	2324239	CUP1659	CUP1660			TRUE	0.989	-3.000	0.389	1.000		NA
2324240	2324241	CUP1661	CUP1662			TRUE	0.809	-3.000	0.000	NA		NA
2324241	2324242	CUP1662	CUP1663			FALSE	0.160	47.000	0.000	NA		NA
2324242	2324243	CUP1663	CUP1664			FALSE	0.047	97.000	0.000	NA		NA
2324243	2324244	CUP1664	CUP1665			TRUE	0.716	11.000	0.000	NA		NA
2324248	2324249	CUP1669	CUP1670			TRUE	0.984	0.000	0.263	NA		NA
2324249	2324250	CUP1670	CUP1671			TRUE	0.995	8.000	0.684	NA	N	NA
2324250	2324251	CUP1671	CUP1672		gptA-1	TRUE	0.939	9.000	0.016	1.000		NA
2324251	2324252	CUP1672	CUP1673	gptA-1		TRUE	0.953	10.000	0.048	1.000		NA
2324252	2324253	CUP1673	CUP1674			FALSE	0.363	47.000	0.016	1.000		NA
2324253	2324254	CUP1674	CUP1675			FALSE	0.208	62.000	0.011	1.000		NA
2324255	2324256	CUP1676	CUP1677		glmS	TRUE	0.988	3.000	0.312	1.000		NA
2324257	2324258	CUP1678	CUP_tRNA-Arg-4	fumC		FALSE	0.023	388.000	0.000	NA		NA
2324258	2324259	CUP_tRNA-Arg-4	CUP1680			FALSE	0.356	26.000	0.000	NA		NA
2324259	2324260	CUP1680	CUP1681			FALSE	0.079	67.000	0.000	NA		NA
2324260	2324261	CUP1681	CUP1682		fusA	FALSE	0.168	46.000	0.000	NA		NA
2324261	2324262	CUP1682	CUP1683	fusA	rpsG	TRUE	0.996	10.000	0.579	1.000	Y	NA
2324262	2324263	CUP1683	CUP1684	rpsG	rpsL	TRUE	0.878	70.000	0.620	0.006	Y	NA
2324263	2324264	CUP1684	CUP1685	rpsL		FALSE	0.025	233.000	0.000	1.000	N	NA
2324264	2324265	CUP1685	CUP1686			TRUE	0.948	11.000	0.095	1.000		NA
2324265	2324266	CUP1686	CUP1687			TRUE	0.881	-3.000	0.000	0.002		NA
2324267	2324268	CUP1688	CUP1689			FALSE	0.181	44.000	0.000	NA		NA
2324269	2324270	CUP1690	CUP1691	rpoC	rpoB	TRUE	0.997	-7.000	0.851	0.001		NA
2324270	2324271	CUP1691	CUP1692	rpoB	rplL	FALSE	0.388	99.000	0.223	1.000		NA
2324271	2324272	CUP1692	CUP1693	rplL		TRUE	0.995	14.000	0.884	0.027	Y	NA
2324272	2324273	CUP1693	CUP1694		rplA	TRUE	0.573	144.000	0.302	0.036	Y	NA
2324273	2324274	CUP1694	CUP1695	rplA	rplK	TRUE	0.946	56.000	0.838	0.036	Y	NA
2324274	2324275	CUP1695	CUP1696	rplK	nusG	TRUE	0.966	23.000	0.681	1.000	N	NA
2324275	2324276	CUP1696	CUP1697	nusG		TRUE	0.997	9.000	0.843	1.000		NA
2324276	2324277	CUP1697	CUP_tRNA-Trp-1			FALSE	0.498	17.000	0.000	NA		NA
2324277	2324278	CUP_tRNA-Trp-1	CUP1699		rpmG	TRUE	0.597	13.000	0.000	NA		NA
2324278	2324279	CUP1699	CUP1700	rpmG	tuf	TRUE	0.734	49.000	0.099	1.000	Y	NA
2324279	2324280	CUP1700	CUP_tRNA-Thr-1	tuf		FALSE	0.076	69.000	0.000	NA		NA
2324280	2324281	CUP_tRNA-Thr-1	CUP_tRNA-Gly-3			FALSE	0.049	93.000	0.000	NA		NA
2324281	2324282	CUP_tRNA-Gly-3	CUP_tRNA-Tyr-1			TRUE	0.846	8.000	0.000	NA		NA
2324282	2324283	CUP_tRNA-Tyr-1	CUP_tRNA-Thr-2			FALSE	0.132	53.000	0.000	NA		NA
2324283	2324284	CUP_tRNA-Thr-2	CUP1705			FALSE	0.481	18.000	0.000	NA		NA
2324284	2324285	CUP1705	CUP1706			FALSE	0.382	24.000	0.000	NA		NA
2324285	2324286	CUP1706	CUP1707			FALSE	0.185	43.000	0.000	NA		NA
2324286	2324287	CUP1707	CUP1708		glnQ	TRUE	0.511	17.000	0.000	1.000		NA
2324287	2324288	CUP1708	CUP1709	glnQ	glnP	TRUE	0.998	2.000	0.773	0.005	Y	NA
2324288	2324289	CUP1709	CUP1710	glnP	glnP	TRUE	0.999	-7.000	0.841	0.005	Y	NA
2324292	2324293	CUP1713	CUP_tRNA-Lys-1	lepB		FALSE	0.035	119.000	0.000	NA		NA
2324293	2324294	CUP_tRNA-Lys-1	CUP_tRNA-Val-2			TRUE	0.849	6.000	0.000	NA		NA
2324294	2324295	CUP_tRNA-Val-2	CUP_tRNA-Asp-1			TRUE	0.560	14.000	0.000	NA		NA
2324295	2324296	CUP_tRNA-Asp-1	CUP_tRNA-Lys-2			TRUE	0.844	4.000	0.000	NA		NA
2324296	2324297	CUP_tRNA-Lys-2	CUP_tRNA-Arg-5			TRUE	0.560	14.000	0.000	NA		NA
2324297	2324298	CUP_tRNA-Arg-5	CUP_tRNA-Val-3			TRUE	0.849	6.000	0.000	NA		NA
2324298	2324299	CUP_tRNA-Val-3	CUP_tRNA-Asp-2			TRUE	0.560	14.000	0.000	NA		NA
2324301	2324302	CUP1722	CUP1723			TRUE	0.844	4.000	0.000	NA		NA
2324303	2324304	CUP1724	CUP1725			TRUE	0.955	12.000	0.051	1.000	Y	NA
2324304	2324305	CUP1725	CUP1726			FALSE	0.194	105.000	0.062	NA		NA
2324305	2324306	CUP1726	CUP1727			TRUE	0.994	-7.000	0.667	NA		NA
2324306	2324307	CUP1727	CUP1728		era	FALSE	0.113	125.000	0.022	NA		NA
2324307	2324308	CUP1728	CUP1729	era	hslU	TRUE	0.957	-3.000	0.051	1.000		NA
2324308	2324309	CUP1729	CUP1730	hslU	hslV	TRUE	0.997	-3.000	0.752	1.000	Y	NA
2324309	2324310	CUP1730	CUP1731	hslV	hsdS	FALSE	0.103	61.000	0.000	1.000		NA
2324310	2324311	CUP1731	CUP1732	hsdS		TRUE	0.703	-28.000	0.000	0.010		NA
2324311	2324312	CUP1732	CUP1733		tlpC-2	FALSE	0.024	413.000	0.000	1.000		NA
2324312	2324313	CUP1733	CUP1734	tlpC-2		FALSE	0.307	30.000	0.000	NA		NA
2324316	2324317	CUP1737	CUP1738		spsC	TRUE	0.994	0.000	0.678	1.000		NA
2324317	2324318	CUP1738	CUP1739	spsC		TRUE	0.826	-7.000	0.000	NA		NA
2324318	2324319	CUP1739	CUP1740			TRUE	0.515	-70.000	0.000	NA		NA
2324319	2324320	CUP1740	CUP1741			TRUE	0.809	-3.000	0.000	NA		NA
2324322	2324323	CUP1743	CUP1744			TRUE	0.753	-13.000	0.000	1.000	N	NA
2324323	2324324	CUP1744	CUP1745			TRUE	0.948	-7.000	0.000	0.069	Y	NA
2324324	2324325	CUP1745	CUP1746			FALSE	0.079	90.000	0.000	0.010		NA
2324325	2324326	CUP1746	CUP1747			TRUE	0.851	4.000	0.000	1.000		NA
2324326	2324327	CUP1747	CUP1748			TRUE	0.707	-28.000	0.000	0.007		NA
2324327	2324328	CUP1748	CUP1749			TRUE	0.981	0.000	0.200	NA		NA
2324328	2324329	CUP1749	CUP1750			FALSE	0.045	100.000	0.000	NA		NA
2324332	2324333	CUP1753	CUP1754	purN		TRUE	0.918	-9.000	0.014	NA	N	NA
2324333	2324334	CUP1754	CUP1755			TRUE	0.890	0.000	0.003	NA		NA
2324334	2324335	CUP1755	CUP1756			TRUE	0.901	-7.000	0.004	NA		NA
2324335	2324336	CUP1756	CUP1757		def	TRUE	0.956	-3.000	0.054	1.000	N	NA
2324336	2324337	CUP1757	CUP1758	def	clpP	TRUE	0.959	7.000	0.030	1.000	N	NA
2324337	2324338	CUP1758	CUP1759	clpP	tig	TRUE	0.994	0.000	0.351	1.000	Y	NA
2324339	2324340	CUP1760	CUP1761	folE		TRUE	0.716	11.000	0.000	NA		NA
2324340	2324341	CUP1761	CUP1762			FALSE	0.025	288.000	0.000	NA		NA
2324342	2324343	CUP1763	CUP1764			TRUE	0.809	-3.000	0.000	NA		NA
2324343	2324344	CUP1764	CUP1765		hisF	TRUE	0.812	0.000	0.000	NA		NA
2324344	2324345	CUP1765	CUP1766	hisF		TRUE	0.896	1.000	0.003	NA		NA
2324345	2324346	CUP1766	CUP1767			TRUE	0.845	-15.000	0.004	NA		NA
2324346	2324347	CUP1767	CUP1768		hisH	TRUE	0.994	9.000	0.210	0.006	Y	NA
2324347	2324348	CUP1768	CUP1769	hisH		TRUE	0.817	-3.000	0.000	1.000		NA
2324348	2324349	CUP1769	CUP1770			TRUE	0.696	-18.000	0.000	NA		NA
2324349	2324350	CUP1770	CUP1771		hisB	TRUE	0.809	-3.000	0.000	NA		NA
2324350	2324351	CUP1771	CUP1772	hisB	hisD	TRUE	0.974	-7.000	0.010	0.006	Y	NA
2324351	2324352	CUP1772	CUP1773	hisD	hisG	TRUE	0.994	4.000	0.171	0.006	Y	NA
2324352	2324353	CUP1773	CUP1774	hisG	rplQ	FALSE	0.065	119.000	0.004	1.000	N	NA
2324353	2324354	CUP1774	CUP1775	rplQ	rpoA	TRUE	0.997	4.000	0.873	1.000	N	NA
2324354	2324355	CUP1775	CUP1776	rpoA	rpsD	TRUE	0.978	13.000	0.549	1.000	N	NA
2324355	2324356	CUP1776	CUP1777	rpsD	rpsK	TRUE	0.985	18.000	0.509	0.035	Y	NA
2324356	2324357	CUP1777	CUP1778	rpsK	rpsM	TRUE	0.998	10.000	0.810	0.026	Y	NA
2324357	2324358	CUP1778	CUP1779	rpsM		FALSE	0.041	106.000	0.000	NA		NA
2324359	2324360	CUP1780	CUP1781			FALSE	0.054	88.000	0.000	NA		NA
2324360	2324361	CUP1781	CUP1782			TRUE	0.806	10.000	0.000	1.000		NA
2324362	2324363	CUP1783	CUP1784		comEC	FALSE	0.491	-226.000	0.000	NA		NA
2324363	2324364	CUP1784	CUP1785	comEC	dedA	TRUE	0.900	0.000	0.005	NA		NA
2324364	2324365	CUP1785	CUP1786	dedA		TRUE	0.715	17.000	0.010	1.000		NA
2324365	2324366	CUP1786	CUP1787			TRUE	0.859	-64.000	0.059	1.000		NA
2324367	2324368	CUP1788	CUP1789		ftsY	TRUE	0.914	0.000	0.011	1.000	N	NA
2324368	2324369	CUP1789	CUP1790	ftsY		FALSE	0.073	85.000	0.000	0.087	N	NA
2324369	2324370	CUP1790	CUP1791		kdsA	FALSE	0.038	107.000	0.000	1.000	N	NA
2324370	2324371	CUP1791	CUP1792	kdsA	ribH	TRUE	0.822	15.000	0.027	1.000	N	NA
2324371	2324372	CUP1792	CUP1793	ribH	nusB	TRUE	0.956	2.000	0.045	1.000	N	NA
2324372	2324373	CUP1793	CUP1794	nusB	pyrF	TRUE	0.939	-3.000	0.023	1.000	N	NA
2324373	2324374	CUP1794	CUP1795	pyrF		TRUE	0.743	13.000	0.003	1.000		NA
2324374	2324375	CUP1795	CUP1796			TRUE	0.996	-3.000	0.790	0.043		NA
2324376	2324377	CUP1797	CUP1798			FALSE	0.027	208.000	0.000	NA		NA
2324377	2324378	CUP1798	CUP1799			FALSE	0.028	194.000	0.000	NA		NA
2324378	2324379	CUP1799	CUP_tRNA-Phe-1			FALSE	0.022	1070.000	0.000	NA		NA
2324379	2324380	CUP_tRNA-Phe-1	CUP1801			FALSE	0.469	19.000	0.000	NA		NA
2324381	2324382	CUP1802	CUP1803	trk1	ktrA	TRUE	0.994	12.000	0.647	0.005	Y	NA
2324383	2324384	CUP1804	CUP1805			TRUE	0.905	2.000	0.007	1.000	N	NA
2324386	2324387	CUP1807	CUP1808	pacS		TRUE	0.786	30.000	0.067	0.002		NA
2324387	2324388	CUP1808	CUP1809			TRUE	0.955	-10.000	0.053	1.000		NA
2324389	2324390	CUP1810	CUP1811			TRUE	0.837	-31.000	0.022	1.000		NA
2324390	2324391	CUP1811	CUP1812			FALSE	0.121	55.000	0.000	NA		NA
2324391	2324392	CUP1812	CUP1813			FALSE	0.036	116.000	0.000	NA		NA
2324393	2324394	CUP1814	CUP1815	ctsF	ctsE	TRUE	0.929	-3.000	0.000	1.000	Y	NA
2324394	2324395	CUP1815	CUP1816	ctsE	ctsX	TRUE	0.817	-3.000	0.000	1.000		NA
2324395	2324396	CUP1816	CUP1817	ctsX	ctsP	TRUE	0.881	47.000	0.667	1.000		NA
2324396	2324397	CUP1817	CUP1818	ctsP	ctsD	TRUE	0.981	-7.000	0.167	1.000		NA
2324397	2324398	CUP1818	CUP1819	ctsD	ctsR	TRUE	0.951	-22.000	0.167	NA		NA
2324398	2324399	CUP1819	CUP1820	ctsR		TRUE	0.949	-3.000	0.032	NA		NA
2324399	2324400	CUP1820	CUP1821			FALSE	0.026	225.000	0.000	NA		NA
2324400	2324401	CUP1821	CUP1822		cydB	TRUE	0.961	10.000	0.078	NA		NA
2324401	2324402	CUP1822	CUP1823	cydB	cydA	TRUE	0.999	0.000	0.962	0.043	Y	NA
2324402	2324403	CUP1823	CUP1824	cydA		TRUE	0.996	-3.000	0.887	NA		NA
2324404	2324405	CUP1825	CUP1826	cdtA	cdtB	TRUE	0.993	0.000	0.421	0.003		NA
2324405	2324406	CUP1826	CUP1827	cdtB	cdtC	TRUE	0.993	10.000	0.500	0.003		NA
2324406	2324407	CUP1827	CUP1828	cdtC		FALSE	0.025	280.000	0.000	NA		NA
2324407	2324408	CUP1828	CUP1829			FALSE	0.034	124.000	0.000	NA		NA
2324409	2324410	CUP1830	CUP1831			FALSE	0.030	168.000	0.000	NA		NA
2324410	2324411	CUP1831	CUP1832			TRUE	0.520	-66.000	0.000	NA		NA
2324411	2324412	CUP1832	CUP1833			TRUE	0.650	12.000	0.000	NA		NA
2324412	2324413	CUP1833	CUP1834			FALSE	0.025	246.000	0.000	NA		NA
2324414	2324415	CUP1835	CUP1836	ccoN	ccoO	TRUE	0.974	12.000	0.283	0.003	N	NA
2324415	2324416	CUP1836	CUP1837	ccoO		TRUE	0.997	5.000	0.738	0.003	N	NA
2324416	2324417	CUP1837	CUP1838		ccoP	TRUE	0.988	0.000	0.262	0.003	N	NA
2324417	2324418	CUP1838	CUP1839	ccoP		TRUE	0.971	0.000	0.105	NA		NA
2324418	2324419	CUP1839	CUP1840			TRUE	0.981	-3.000	0.211	NA		NA
2324419	2324420	CUP1840	CUP1841			TRUE	0.984	-3.000	0.250	NA		NA
2324420	2324421	CUP1841	CUP1842			TRUE	0.972	-7.000	0.102	NA		NA
2324421	2324422	CUP1842	CUP1843			TRUE	0.967	-3.000	0.091	NA		NA
2324422	2324423	CUP1843	CUP1844			TRUE	0.989	-3.000	0.117	0.067	Y	NA
2324424	2324425	CUP0436	CUP0437		tatC	TRUE	0.806	10.000	0.000	1.000		NA
2324425	2324426	CUP0437	CUP0438	tatC		TRUE	0.997	-7.000	0.535	1.000	Y	NA
2324426	2324427	CUP0438	CUP0439		panC	FALSE	0.194	41.000	0.000	1.000	N	NA
2324427	2324428	CUP0439	CUP0440	panC	panB	TRUE	0.996	10.000	0.395	0.001	Y	NA
2324428	2324429	CUP0440	CUP0441	panB		TRUE	0.812	0.000	0.000	NA		NA
2324429	2324430	CUP0441	CUP0442			FALSE	0.271	33.000	0.000	NA		NA
2324431	2324432	CUP0443	CUP0444	glnP	glnQ	TRUE	0.987	-7.000	0.096	1.000	Y	NA
2324439	2324440	CUP0451	CUP0452			TRUE	0.957	-7.000	0.039	NA		NA
2324440	2324441	CUP0452	CUP0453			TRUE	0.915	-3.000	0.011	NA		NA
2324443	2324444	CUP0455	CUP0456	adk	aspS	TRUE	0.942	-3.000	0.025	1.000	N	NA
2324445	2324446	CUP0457	CUP0458			TRUE	0.961	0.000	0.066	1.000	N	NA
2324446	2324447	CUP0458	CUP0459			TRUE	0.536	56.000	0.141	1.000	N	NA
2324447	2324448	CUP0459	CUP0460			TRUE	0.916	-9.000	0.013	NA	N	NA
2324448	2324449	CUP0460	CUP0461		dniR	TRUE	0.924	0.000	0.015	NA		NA
2324449	2324450	CUP0461	CUP0462	dniR	rlpA	TRUE	0.873	-37.000	0.062	NA		NA
2324450	2324451	CUP0462	CUP0463	rlpA		TRUE	0.938	2.000	0.020	NA		NA
2324451	2324452	CUP0463	CUP0464			TRUE	0.882	-21.000	0.023	NA		NA
2324452	2324453	CUP0464	CUP0465			TRUE	0.883	-15.000	0.013	NA		NA
2324453	2324454	CUP0465	CUP0466			TRUE	0.949	-10.000	0.041	NA		NA
2324454	2324455	CUP0466	CUP0467			TRUE	0.905	0.000	0.007	NA		NA
2324455	2324456	CUP0467	CUP0468		pbp-1	TRUE	0.954	0.000	0.043	NA		NA
2324456	2324457	CUP0468	CUP0469	pbp-1	napA	FALSE	0.030	145.000	0.000	1.000	N	NA
2324457	2324458	CUP0469	CUP0470	napA		TRUE	0.990	3.000	0.270	0.003		NA
2324458	2324459	CUP0470	CUP0471			TRUE	0.996	-3.000	0.795	0.003		NA
2324459	2324460	CUP0471	CUP0472			TRUE	0.995	-10.000	0.385	0.003	Y	NA
2324460	2324461	CUP0472	CUP0473			TRUE	0.974	0.000	0.132	NA		NA
2324461	2324462	CUP0473	CUP0474			TRUE	0.975	0.000	0.139	NA		NA
2324462	2324463	CUP0474	CUP0475			TRUE	0.661	41.000	0.111	NA		NA
2324463	2324464	CUP0475	CUP0476		azlC	TRUE	0.920	-3.000	0.013	NA		NA
2324464	2324465	CUP0476	CUP0477	azlC		TRUE	0.998	-7.000	0.915	NA	Y	NA
2324465	2324466	CUP0477	CUP0478			TRUE	0.970	9.000	0.013	NA	Y	NA
2324466	2324467	CUP0478	CUP0479			TRUE	0.534	15.000	0.000	NA		NA
2324467	2324468	CUP0479	CUP0480			FALSE	0.160	47.000	0.000	NA		NA
2324468	2324469	CUP0480	CUP0481			TRUE	0.974	-3.000	0.133	NA		NA
2324469	2324470	CUP0481	CUP0482		cca	TRUE	0.959	-31.000	0.325	NA		NA
2324470	2324471	CUP0482	CUP0483	cca	purU	TRUE	0.939	-15.000	0.064	1.000	N	NA
2324471	2324472	CUP0483	CUP0484	purU	corA	TRUE	0.792	10.000	0.000	1.000	N	NA
2324472	2324473	CUP0484	CUP0485	corA		TRUE	0.863	11.000	0.011	1.000	N	NA
2324473	2324474	CUP0485	CUP0486			FALSE	0.029	163.000	0.000	1.000	N	NA
2324474	2324475	CUP0486	CUP0487			FALSE	0.037	180.000	0.000	0.085	N	NA
2324475	2324476	CUP0487	CUP0488			TRUE	0.919	-24.000	0.085	NA		NA
2324477	2324478	CUP0489	CUP0490			TRUE	0.843	9.000	0.000	1.000		NA
2324479	2324480	CUP0491	CUP0492			FALSE	0.041	106.000	0.000	NA		NA
2324481	2324482	CUP0493	CUP0494			TRUE	0.778	46.000	0.333	NA		NA
2324483	2324484	CUP0495	CUP0496			FALSE	0.414	23.000	0.000	NA		NA
2324485	2324486	CUP0497	CUP0498			TRUE	0.877	30.000	0.294	NA		NA
2324486	2324487	CUP0498	CUP0499			TRUE	0.979	-7.000	0.154	NA		NA
2324487	2324488	CUP0499	CUP0500		flhA	TRUE	0.969	10.000	0.106	1.000		NA
2324488	2324489	CUP0500	CUP0501	flhA		TRUE	0.959	-7.000	0.053	NA	N	NA
2324489	2324490	CUP0501	CUP0502			FALSE	0.448	21.000	0.000	NA		NA
2324491	2324492	CUP0503	CUP0504	rpsO		FALSE	0.253	33.000	0.000	NA	N	NA
2324493	2324494	CUP0505	CUP0506		oorB	TRUE	0.995	-3.000	0.324	0.003	Y	NA
2324494	2324495	CUP0506	CUP0507	oorB	oorA	TRUE	0.998	2.000	0.771	0.002	Y	NA
2324495	2324496	CUP0507	CUP0508	oorA	korD	TRUE	0.996	9.000	0.316	0.003	Y	NA
2324496	2324497	CUP0508	CUP0509	korD	sucD	TRUE	0.984	10.000	0.097	1.000	Y	NA
2324497	2324498	CUP0509	CUP0510	sucD	sucC	TRUE	0.992	10.000	0.169	0.002	Y	NA
2324498	2324499	CUP0510	CUP0511	sucC		TRUE	0.974	1.000	0.022	1.000	Y	NA
2324499	2324500	CUP0511	CUP0512			TRUE	0.974	-3.000	0.025	1.000	Y	NA
2324500	2324501	CUP0512	CUP0513		psd	FALSE	0.035	115.000	0.000	1.000	N	NA
2324501	2324502	CUP0513	CUP0514	psd		TRUE	0.967	-3.000	0.089	1.000		NA
2324503	2324504	CUP0515	CUP0516	gltX		TRUE	0.945	-16.000	0.088	1.000		NA
2324504	2324505	CUP0516	CUP0517			TRUE	0.964	-3.000	0.080	NA		NA
2324506	2324507	CUP0518	CUP0519			FALSE	0.356	26.000	0.000	NA		NA
2324507	2324508	CUP0519	CUP0520			FALSE	0.504	-100.000	0.000	NA		NA
2324508	2324509	CUP0520	CUP0521			FALSE	0.481	18.000	0.000	NA		NA
2324509	2324510	CUP0521	CUP0522			TRUE	0.533	-55.000	0.000	NA		NA
2324510	2324511	CUP0522	CUP0523			FALSE	0.044	101.000	0.000	NA		NA
2324511	2324512	CUP0523	CUP0524			FALSE	0.025	270.000	0.000	NA		NA
2324512	2324513	CUP0524	CUP0525			FALSE	0.059	82.000	0.000	NA		NA
2324513	2324514	CUP0525	CUP0526			FALSE	0.032	144.000	0.000	NA		NA
2324515	2324516	CUP0527	CUP0528	carB		TRUE	0.987	11.000	0.556	NA	N	NA
2324518	2324519	CUP0530	CUP0531	acpP	fabF-1	TRUE	0.888	24.000	0.066	1.000	Y	NA
2324519	2324520	CUP0531	CUP0532	fabF-1	accA	TRUE	0.980	2.000	0.046	1.000	Y	NA
2324521	2324522	CUP0533	CUP0534			TRUE	0.833	3.000	0.000	NA		NA
2324522	2324523	CUP0534	CUP0535		ribE	TRUE	0.758	-36.000	0.011	NA		NA
2324523	2324524	CUP0535	CUP0536	ribE		TRUE	0.895	0.000	0.004	NA		NA
2324525	2324526	CUP0537	CUP0538	groES	groEL	TRUE	0.992	11.000	0.356	0.009	Y	NA
2324526	2324527	CUP0538	CUP0539	groEL	thiH	FALSE	0.043	101.000	0.000	1.000	N	NA
2324527	2324528	CUP0539	CUP0540	thiH		TRUE	0.903	32.000	0.128	0.005	Y	NA
2324529	2324530	CUP0541	CUP0542	glpQ-2	glpQ-2	FALSE	0.031	148.000	0.000	NA		NA
2324532	2324533	CUP0544	CUP0545			TRUE	0.919	-3.000	0.014	1.000	N	NA
2324533	2324534	CUP0545	CUP0546		rplS	FALSE	0.117	55.000	0.000	1.000	N	NA
2324534	2324535	CUP0546	CUP0547	rplS	trmD	TRUE	0.996	10.000	0.567	1.000	Y	NA
2324535	2324536	CUP0547	CUP0548	trmD		TRUE	0.997	-3.000	0.672	1.000	Y	NA
2324536	2324537	CUP0548	CUP0549			TRUE	0.988	-7.000	0.324	1.000		NA
2324537	2324538	CUP0549	CUP0550		rpsP	TRUE	0.990	3.000	0.385	1.000		NA
2324538	2324539	CUP0550	CUP0551	rpsP	ffh	TRUE	0.636	63.000	0.361	1.000	N	NA
2324539	2324540	CUP0551	CUP0552	ffh		FALSE	0.203	63.000	0.013	1.000	N	NA
2324540	2324541	CUP0552	CUP0553			TRUE	0.949	-19.000	0.133	1.000	N	NA
2324541	2324542	CUP0553	CUP0554			TRUE	0.812	27.000	0.122	NA		NA
2324542	2324543	CUP0554	CUP0555			TRUE	0.978	11.000	0.342	NA		NA
2324543	2324544	CUP0555	CUP0556		glyQ	TRUE	0.937	-13.000	0.041	NA		NA
2324544	2324545	CUP0556	CUP0557	glyQ		TRUE	0.915	-3.000	0.011	NA		NA
2324545	2324546	CUP0557	CUP0558		purE	TRUE	0.936	1.000	0.019	NA		NA
2324546	2324547	CUP0558	CUP0559	purE		TRUE	0.930	-3.000	0.018	1.000	N	NA
2324547	2324548	CUP0559	CUP0560			TRUE	0.962	-3.000	0.068	NA		NA
2324549	2324550	CUP0561	CUP0562	glnA		FALSE	0.078	217.000	0.000	1.000	Y	NA
2324550	2324551	CUP0562	CUP0563			FALSE	0.112	109.000	0.000	1.000	Y	NA
2324551	2324552	CUP0563	CUP0564		trpD	TRUE	0.978	-3.000	0.019	0.001	Y	NA
2324552	2324553	CUP0564	CUP0565	trpD	trpF	TRUE	0.934	-37.000	0.052	1.000	Y	NA
2324553	2324554	CUP0565	CUP0566	trpF	trpB	TRUE	0.996	-3.000	0.375	0.003	Y	NA
2324554	2324555	CUP0566	CUP0567	trpB	trpA	TRUE	0.995	-7.000	0.248	0.001	Y	NA
2324555	2324556	CUP0567	CUP0568	trpA		FALSE	0.211	67.000	0.017	NA		NA
2324556	2324557	CUP0568	CUP0569			TRUE	0.994	-7.000	0.625	NA		NA
2324557	2324558	CUP0569	CUP0570			TRUE	0.992	0.000	0.531	NA		NA
2324559	2324560	CUP0571	CUP0572	gppA		TRUE	0.996	1.000	0.806	1.000		NA
2324560	2324561	CUP0572	CUP0573			FALSE	0.341	106.000	0.200	1.000		NA
2324561	2324562	CUP0573	CUP0574			FALSE	0.055	87.000	0.000	NA		NA
2324562	2324563	CUP0574	CUP0575		rpsU	FALSE	0.118	94.000	0.012	NA		NA
2324564	2324565	CUP0576	CUP0577			TRUE	0.995	-10.000	0.818	1.000		NA
2324565	2324566	CUP0577	CUP0578			FALSE	0.320	98.000	0.145	1.000		NA
2324566	2324567	CUP0578	CUP0579			TRUE	0.996	0.000	0.945	1.000	N	NA
2324567	2324568	CUP0579	CUP0580			TRUE	0.987	-7.000	0.241	0.028	N	NA
2324571	2324572	CUP0583	CUP0584		lspA	TRUE	0.897	-16.000	0.020	1.000		NA
2324572	2324573	CUP0584	CUP0585	lspA	glmM	TRUE	0.957	-7.000	0.042	1.000	N	NA
2324573	2324574	CUP0585	CUP0586	glmM		FALSE	0.121	55.000	0.000	NA		NA
2324574	2324575	CUP0586	CUP0587		mauG	FALSE	0.056	85.000	0.000	NA		NA
2324576	2324577	CUP0588	CUP0589			TRUE	0.931	-15.000	0.040	1.000		NA
2324577	2324578	CUP0589	CUP0590			TRUE	0.826	-7.000	0.000	NA		NA
2324579	2324580	CUP0591	CUP0592			TRUE	0.998	-7.000	0.846	1.000	Y	NA
2324581	2324582	CUP0593	CUP0594			TRUE	0.609	13.000	0.000	1.000		NA
2324583	2324584	CUP0595	CUP0596			TRUE	0.715	-16.000	0.000	NA		NA
2324584	2324585	CUP0596	CUP0597			TRUE	0.985	-3.000	0.286	NA		NA
2324585	2324586	CUP0597	CUP0598			FALSE	0.023	402.000	0.000	NA		NA
2324586	2324587	CUP0598	CUP0599			FALSE	0.069	76.000	0.000	1.000		NA
2324587	2324588	CUP0599	CUP0600		rfbF	FALSE	0.032	129.000	0.000	1.000	N	NA
2324588	2324589	CUP0600	CUP0601	rfbF		TRUE	0.994	-3.000	0.679	1.000		NA
2324589	2324590	CUP0601	CUP0602			TRUE	0.994	-9.000	0.667	1.000		NA
2324590	2324591	CUP0602	CUP0603			TRUE	0.597	13.000	0.000	NA		NA
2324591	2324592	CUP0603	CUP0604			TRUE	0.514	16.000	0.000	NA		NA
2324594	2324595	CUP1260	CUP1261			TRUE	0.798	10.000	0.000	NA		NA
2324595	2324596	CUP1261	CUP1262			TRUE	0.970	0.000	0.018	1.000	Y	NA
2324596	2324597	CUP1262	CUP1263			TRUE	0.969	-3.000	0.018	1.000	Y	NA
2324597	2324598	CUP1263	CUP1264			TRUE	0.997	2.000	1.000	NA		NA
2324598	2324599	CUP1264	CUP1265			TRUE	0.997	-3.000	1.000	NA		NA
2324599	2324600	CUP1265	CUP1266			FALSE	0.098	61.000	0.000	NA		NA
2324600	2324601	CUP1266	CUP1267			TRUE	0.927	-3.000	0.000	NA	Y	NA
2324601	2324602	CUP1267	CUP1268			TRUE	0.997	-3.000	0.667	NA	Y	NA
2324602	2324603	CUP1268	CUP1269		glf	TRUE	0.962	2.000	0.008	NA	Y	NA
2324603	2324604	CUP1269	CUP1270	glf		FALSE	0.174	65.000	0.008	NA		NA
2324605	2324606	CUP1271	CUP1272			FALSE	0.191	42.000	0.000	NA		NA
2324608	2324609	CUP1274	CUP1275			TRUE	0.809	-3.000	0.000	NA		NA
2324609	2324610	CUP1275	CUP1276			FALSE	0.279	64.000	0.000	0.011	Y	NA
2324610	2324611	CUP1276	CUP1277			TRUE	0.826	-7.000	0.000	NA		NA
2324611	2324612	CUP1277	CUP1278			FALSE	0.346	40.000	0.005	NA		NA
2324612	2324613	CUP1278	CUP1279			TRUE	0.833	-7.000	0.000	1.000		NA
2324613	2324614	CUP1279	CUP1280			TRUE	0.804	-3.000	0.000	1.000	N	NA
2324615	2324616	CUP1281	CUP1282			TRUE	0.826	-7.000	0.000	NA		NA
2324617	2324618	CUP1283	CUP1284			FALSE	0.447	113.000	0.389	NA		NA
2324620	2324621	CUP1286	CUP1287	selA		TRUE	0.995	-6.000	0.569	0.001	N	NA
2324621	2324622	CUP1287	CUP1288			TRUE	0.548	38.000	0.031	1.000	N	NA
2324622	2324623	CUP1288	CUP1289			TRUE	0.817	-3.000	0.000	1.000		NA
2324623	2324624	CUP1289	CUP1290			FALSE	0.034	132.000	0.000	1.000		NA
2324624	2324625	CUP1290	CUP1291		luxS	FALSE	0.038	107.000	0.000	1.000	N	NA
2324625	2324626	CUP1291	CUP1292	luxS	metE	FALSE	0.044	342.000	0.004	1.000	N	NA
2324626	2324627	CUP1292	CUP1293	metE		TRUE	0.984	10.000	0.050	0.002	Y	NA
2324630	2324631	CUP1296	CUP1297			TRUE	0.952	0.000	0.035	NA		NA
2324631	2324632	CUP1297	CUP1298		flgK	FALSE	0.325	73.000	0.084	NA		NA
2324632	2324633	CUP1298	CUP1299	flgK		TRUE	0.984	13.000	0.558	0.004		NA
2324633	2324634	CUP1299	CUP1300			TRUE	0.944	36.000	0.677	0.004		NA
2324634	2324635	CUP1300	CUP1301			TRUE	0.752	58.000	0.469	NA		NA
2324635	2324636	CUP1301	CUP1302		flgI	TRUE	0.993	0.000	0.569	NA		NA
2324638	2324639	CUP1304	CUP1305			TRUE	0.993	-3.000	0.200	0.003	Y	NA
2324639	2324640	CUP1305	CUP1306		fdhA	TRUE	0.902	4.000	0.000	0.003		NA
2324640	2324641	CUP1306	CUP1307	fdhA		TRUE	0.984	0.000	0.250	NA		NA
2324641	2324642	CUP1307	CUP1308			TRUE	0.969	-25.000	0.375	NA		NA
2324645	2324646	CUP1311	CUP1312		moaD2	TRUE	0.884	-13.000	0.010	1.000	N	NA
2324646	2324647	CUP1312	CUP1313	moaD2		TRUE	0.996	1.000	0.501	1.000	Y	NA
2324647	2324648	CUP1313	CUP1314		moeA1	TRUE	0.975	10.000	0.018	0.005	Y	NA
2324648	2324649	CUP1314	CUP1315	moeA1	trxB	FALSE	0.048	91.000	0.000	1.000	N	NA
2324653	2324654	CUP1319	CUP1320			TRUE	0.995	-7.000	0.714	NA		NA
2324654	2324655	CUP1320	CUP1321			TRUE	0.519	83.000	0.333	NA		NA
2324656	2324657	CUP1322	CUP_tRNA-Val-1			FALSE	0.092	62.000	0.000	NA		NA
2324657	2324658	CUP_tRNA-Val-1	CUP_tRNA-Ala-3			TRUE	0.833	3.000	0.000	NA		NA
2324658	2324659	CUP_tRNA-Ala-3	CUP1325			TRUE	0.534	15.000	0.000	NA		NA
2324659	2324660	CUP1325	CUP1326		ribD	TRUE	0.789	-22.000	0.005	NA		NA
2324660	2324661	CUP1326	CUP1327	ribD		TRUE	0.804	1.000	0.000	NA	N	NA
2324662	2324663	CUP1328	CUP1329			TRUE	0.970	-3.000	0.056	0.001		NA
2324663	2324664	CUP1329	CUP1330			FALSE	0.305	66.000	0.046	NA		NA
2324664	2324665	CUP1330	CUP1331			TRUE	0.976	2.000	0.132	NA		NA
2324665	2324666	CUP1331	CUP1332			TRUE	0.993	-3.000	0.600	NA		NA
2324667	2324668	CUP1333	CUP1334	acpS	fliL	TRUE	0.954	0.000	0.047	1.000	N	NA
2324670	2324671	CUP1336	CUP1337		nadD	TRUE	0.901	23.000	0.221	NA		NA
2324672	2324673	CUP1338	CUP1339	gap	pgk	TRUE	0.979	2.000	0.020	0.004	Y	NA
2324673	2324674	CUP1339	CUP1340	pgk	tpiA	TRUE	0.973	0.000	0.022	1.000	Y	NA
2324674	2324675	CUP1340	CUP1341	tpiA	fabI	TRUE	0.969	-3.000	0.071	0.037	N	NA
2324675	2324676	CUP1341	CUP1342	fabI		TRUE	0.791	-10.000	0.000	1.000	N	NA
2324677	2324678	CUP1343	CUP1344	feoB		TRUE	0.984	1.000	0.075	1.000	Y	NA
2324679	2324680	CUP_tRNA-Pro-1	CUP_tRNA-His-1			FALSE	0.414	23.000	0.000	NA		NA
2324680	2324681	CUP_tRNA-His-1	CUP_tRNA-Arg-2			TRUE	0.844	4.000	0.000	NA		NA
2324681	2324682	CUP_tRNA-Arg-2	CUP_tRNA-Arg-3			TRUE	0.716	11.000	0.000	NA		NA
2324682	2324683	CUP_tRNA-Arg-3	CUP_tRNA-Leu-3			TRUE	0.849	6.000	0.000	NA		NA
2324683	2324684	CUP_tRNA-Leu-3	CUP1350		fdhD	FALSE	0.031	154.000	0.000	NA		NA
2324684	2324685	CUP1350	CUP1351	fdhD		TRUE	0.981	-7.000	0.172	NA		NA
2324685	2324686	CUP1351	CUP1352			TRUE	0.801	18.000	0.031	NA		NA
2324686	2324687	CUP1352	CUP1353		selD	FALSE	0.246	104.000	0.104	1.000	N	NA
2324688	2324689	CUP1354	CUP1355			FALSE	0.144	50.000	0.000	NA		NA
2324690	2324691	CUP1356	CUP1357			TRUE	0.812	0.000	0.000	NA		NA
2324691	2324692	CUP1357	CUP1358			TRUE	0.607	-27.000	0.000	NA		NA
2324692	2324693	CUP1358	CUP1359			FALSE	0.448	21.000	0.000	NA		NA
2324693	2324694	CUP1359	CUP1360			FALSE	0.028	182.000	0.000	NA		NA
2324694	2324695	CUP1360	CUP1361			TRUE	0.735	-15.000	0.000	NA		NA
2324695	2324696	CUP1361	CUP1362			TRUE	0.577	-31.000	0.000	NA		NA
2324698	2324699	CUP1364	CUP1365			FALSE	0.414	23.000	0.000	NA		NA
2324699	2324700	CUP1365	CUP1366		putP	TRUE	0.973	10.000	0.141	1.000	N	NA
2324700	2324701	CUP1366	CUP1367	putP		FALSE	0.119	56.000	0.000	1.000		NA
2324702	2324703	CUP1368	CUP1369	ligA-2		TRUE	0.577	-31.000	0.000	NA		NA
2324703	2324704	CUP1369	CUP1370			TRUE	0.993	-13.000	0.788	NA		NA
2324704	2324705	CUP1370	CUP1371		eno	TRUE	0.897	-31.000	0.080	NA		NA
2324705	2324706	CUP1371	CUP1372	eno	recA	TRUE	0.952	1.000	0.033	1.000	N	NA
2324707	2324708	CUP1373	CUP1374		fliQ	TRUE	0.960	10.000	0.068	1.000		NA
2324708	2324709	CUP1374	CUP1375	fliQ	murB2	FALSE	0.319	69.000	0.066	1.000	N	NA
2324709	2324710	CUP1375	CUP1376	murB2	bioB	FALSE	0.234	36.000	0.000	1.000	N	NA
2324710	2324711	CUP1376	CUP1377	bioB	napA-1	TRUE	0.864	-19.000	0.017	1.000	N	NA
2324711	2324712	CUP1377	CUP1378	napA-1		TRUE	0.681	-19.000	0.000	NA		NA
2324712	2324713	CUP1378	CUP1379		gltA	TRUE	0.650	12.000	0.000	NA		NA
2324713	2324714	CUP1379	CUP1380	gltA		TRUE	0.937	-3.000	0.022	1.000	N	NA
2324714	2324715	CUP1380	CUP1381			TRUE	0.584	37.000	0.039	NA		NA
2324716	2324717	CUP1382	CUP1383			FALSE	0.121	55.000	0.000	NA		NA
2324717	2324718	CUP1383	CUP1384			TRUE	0.904	-3.000	0.009	NA	N	NA
2324718	2324719	CUP1384	CUP1385			TRUE	0.950	-3.000	0.042	NA	N	NA
2324719	2324720	CUP1385	CUP1386		fabD	TRUE	0.950	-3.000	0.037	1.000	N	NA
2324720	2324721	CUP1386	CUP1387	fabD	slyD	TRUE	0.918	-3.000	0.013	1.000	N	NA
2324721	2324722	CUP1387	CUP1388	slyD		TRUE	0.962	21.000	0.543	1.000		NA
2324722	2324723	CUP1388	CUP1389			TRUE	0.995	0.000	0.794	1.000		NA
2324723	2324724	CUP1389	CUP1390		tolB	TRUE	0.735	78.000	0.702	1.000	N	NA
2324725	2324726	CUP1391	CUP1392	hsdM	hsdR_2	TRUE	0.988	3.000	0.083	0.063	Y	NA
2324726	2324727	CUP1392	CUP1393	hsdR_2	hsdS_4	TRUE	0.968	-16.000	0.025	0.003	Y	NA
2324728	2324729	CUP1394	CUP1395			TRUE	0.987	-3.000	0.343	NA		NA
2324729	2324730	CUP1395	CUP1396			TRUE	0.999	2.000	0.944	0.032	Y	NA
2324730	2324731	CUP1396	CUP1397		atpC	TRUE	0.950	-3.000	0.036	1.000	N	NA
2324731	2324732	CUP1397	CUP1398	atpC	atpD	TRUE	0.998	0.000	0.837	0.007	Y	NA
2324732	2324733	CUP1398	CUP1399	atpD	atpG	TRUE	0.986	24.000	0.724	0.007	Y	NA
2324733	2324734	CUP1399	CUP1400	atpG	atpA	TRUE	0.998	10.000	0.846	0.007	Y	NA
2324734	2324735	CUP1400	CUP1401	atpA	atpH	TRUE	0.997	12.000	0.864	0.007	Y	NA
2324735	2324736	CUP1401	CUP1402	atpH		TRUE	0.991	0.000	0.132	0.007	Y	NA
2324736	2324737	CUP1402	CUP1403			TRUE	0.991	9.000	0.110	0.007	Y	NA
2324737	2324738	CUP1403	CUP1404		spo0J	FALSE	0.316	62.000	0.037	1.000	N	NA
2324738	2324739	CUP1404	CUP1405	spo0J		TRUE	0.997	5.000	0.827	1.000	N	NA
2324739	2324740	CUP1405	CUP1406			TRUE	0.951	-3.000	0.040	1.000	N	NA
2324740	2324741	CUP1406	CUP1407		fmt	TRUE	0.898	-19.000	0.029	1.000	N	NA
2324741	2324742	CUP1407	CUP1408	fmt		FALSE	0.170	45.000	0.000	1.000	N	NA
2324742	2324743	CUP1408	CUP1409		rplO	TRUE	0.995	0.000	0.730	1.000	N	NA
2324743	2324744	CUP1409	CUP1410	rplO	rpsE	TRUE	0.993	4.000	0.148	0.032	Y	NA
2324744	2324745	CUP1410	CUP1411	rpsE	rplR	TRUE	0.998	10.000	0.814	0.032	Y	NA
2324745	2324746	CUP1411	CUP1412	rplR		TRUE	0.998	10.000	0.815	0.024	Y	NA
2324746	2324747	CUP1412	CUP1413		rpsH	TRUE	0.902	75.000	0.808	0.024	Y	NA
2324747	2324748	CUP1413	CUP1414	rpsH	rpsN	TRUE	0.996	10.000	0.473	0.024	Y	NA
2324748	2324749	CUP1414	CUP1415	rpsN		TRUE	0.991	-25.000	0.496	0.024	Y	NA
2324749	2324750	CUP1415	CUP1416		rplX	TRUE	0.998	9.000	0.758	0.024	Y	NA
2324750	2324751	CUP1416	CUP1417	rplX	rplN	TRUE	0.998	0.000	0.810	0.032	Y	NA
2324751	2324752	CUP1417	CUP1418	rplN	rpsQ	TRUE	0.998	-3.000	0.791	0.032	Y	NA
2324752	2324753	CUP1418	CUP1419	rpsQ	rpmC	TRUE	0.996	10.000	0.828	0.024		NA
2324753	2324754	CUP1419	CUP1420	rpmC	rplP	TRUE	0.995	-13.000	0.802	0.024		NA
2324754	2324755	CUP1420	CUP1421	rplP	rpsC	TRUE	0.999	3.000	0.828	0.032	Y	NA
2324755	2324756	CUP1421	CUP1422	rpsC		TRUE	0.998	1.000	0.719	0.032	Y	NA
2324756	2324757	CUP1422	CUP1423		rpsS	TRUE	0.994	13.000	0.769	0.032	Y	NA
2324757	2324758	CUP1423	CUP1424	rpsS	rplB	TRUE	0.998	2.000	0.820	0.032	Y	NA
2324758	2324759	CUP1424	CUP1425	rplB	rplW	TRUE	0.998	2.000	0.849	1.000	Y	NA
2324759	2324760	CUP1425	CUP1426	rplW	rplD	TRUE	0.997	3.000	0.513	1.000	Y	NA
2324760	2324761	CUP1426	CUP1427	rplD	rplC	TRUE	0.995	-3.000	0.361	0.024	Y	NA
2324761	2324762	CUP1427	CUP1428	rplC	rpsJ	TRUE	0.994	11.000	0.467	0.032	Y	NA
2324762	2324763	CUP1428	CUP1429	rpsJ	rluC	FALSE	0.102	119.000	0.000	1.000	Y	NA
2324764	2324765	CUP1430	CUP1431	purB		TRUE	0.923	12.000	0.012	1.000	Y	NA
2324766	2324767	CUP1432	CUP1433			FALSE	0.082	66.000	0.000	NA		NA
2324767	2324768	CUP1433	CUP1434			TRUE	0.932	-13.000	0.028	1.000		NA
2324769	2324770	CUP1435	CUP1436			TRUE	0.931	10.000	0.011	0.030		NA
2324770	2324771	CUP1436	CUP1437			TRUE	0.809	-3.000	0.000	NA		NA
2324772	2324773	CUP1438	CUP1439			TRUE	0.796	-10.000	0.000	NA		NA
2324774	2324775	CUP1440	CUP1441			FALSE	0.033	127.000	0.000	NA		NA
2324778	2324779	CUP0139	CUP0138		hemU-2	TRUE	0.934	32.000	0.250	0.027	Y	NA
2324779	2324780	CUP0138	CUP0137	hemU-2	hemV-1	TRUE	0.992	-3.000	0.226	1.000	Y	NA
2324780	2324781	CUP0137	CUP0136	hemV-1		TRUE	0.986	-3.000	0.113	1.000	Y	NA
2324782	2324783	CUP0135	CUP0134			TRUE	0.980	-3.000	0.148	0.079	N	NA
2324783	2324784	CUP0134	CUP0133			TRUE	0.998	-7.000	0.815	0.032	Y	NA
2324786	2324787	CUP0131	CUP0130			TRUE	0.971	-3.000	0.104	1.000		NA
2324787	2324788	CUP0130	CUP0129			TRUE	0.985	-7.000	0.227	1.000		NA
2324788	2324789	CUP0129	CUP0128			TRUE	0.988	-7.000	0.318	NA		NA
2324789	2324790	CUP0128	CUP0127			TRUE	0.987	3.000	0.269	NA		NA
2324790	2324791	CUP0127	CUP0126		hemL	TRUE	0.991	-3.000	0.462	1.000		NA
2324791	2324792	CUP0126	CUP0125	hemL		TRUE	0.982	0.000	0.212	1.000		NA
2324792	2324793	CUP0125	CUP0124		pglD	TRUE	0.820	0.000	0.000	1.000		NA
2324793	2324794	CUP0124	CUP0123	pglD	pglC	TRUE	0.952	-13.000	0.074	1.000		NA
2324794	2324795	CUP0123	CUP0122	pglC	pglA	TRUE	0.989	-7.000	0.128	1.000	Y	NA
2324795	2324796	CUP0122	CUP0121	pglA	pglB	TRUE	0.955	-3.000	0.045	1.000		NA
2324796	2324797	CUP0121	CUP0120	pglB	pglJ	TRUE	0.988	-3.000	0.375	1.000		NA
2324797	2324798	CUP0120	CUP0119	pglJ	pglI	TRUE	0.989	-12.000	0.208	NA	Y	NA
2324798	2324799	CUP0119	CUP0118	pglI	pglH	TRUE	0.992	-3.000	0.267	NA	Y	NA
2324799	2324800	CUP0118	CUP0117	pglH	wlaB	TRUE	0.984	6.000	0.179	1.000	N	NA
2324800	2324801	CUP0117	CUP0116	wlaB	galE	TRUE	0.971	-6.000	0.086	1.000	N	NA
2324801	2324802	CUP0116	CUP0115	galE	wlaX	TRUE	0.567	46.000	0.086	1.000	N	NA
2324803	2324804	CUP0114	CUP0113	waaC		TRUE	0.991	-10.000	0.231	1.000	Y	NA
2324804	2324805	CUP0113	CUP0112			TRUE	0.980	-3.000	0.050	1.000	Y	NA
2324805	2324806	CUP0112	CUP0111			TRUE	0.963	-3.000	0.011	1.000	Y	NA
2324807	2324808	CUP0110	CUP0109			TRUE	0.991	-24.000	0.900	NA		NA
2324808	2324809	CUP0109	CUP0108		gyrA	FALSE	0.210	58.000	0.008	NA		NA
2324809	2324810	CUP0108	CUP0107	gyrA	ctsW	FALSE	0.393	38.000	0.007	1.000		NA
2324810	2324811	CUP0107	CUP0106	ctsW		TRUE	0.977	-3.000	0.152	NA		NA
2324812	2324813	CUP0105	CUP0104	murD		TRUE	0.831	9.000	0.000	1.000	N	NA
2324813	2324814	CUP0104	CUP0103			TRUE	0.948	2.000	0.026	NA		NA
2324814	2324815	CUP0103	CUP0102		ppk	FALSE	0.114	56.000	0.000	NA		NA
2324820	2324821	CUP0097	CUP0096		dapA	TRUE	0.983	0.000	0.238	1.000	N	NA
2324821	2324822	CUP0096	CUP0095	dapA		TRUE	0.984	-7.000	0.217	1.000		NA
2324822	2324823	CUP0095	CUP0094		pyrD	TRUE	0.956	-3.000	0.048	1.000		NA
2324823	2324824	CUP0094	CUP0093	pyrD	msbA	FALSE	0.449	39.000	0.017	1.000	N	NA
2324824	2324825	CUP0093	CUP0092	msbA	cysS	TRUE	0.919	0.000	0.013	1.000	N	NA
2324825	2324826	CUP0092	CUP0091	cysS	mviN	TRUE	0.931	-13.000	0.027	1.000		NA
2324826	2324827	CUP0091	CUP0090	mviN		FALSE	0.111	58.000	0.000	1.000		NA
2324827	2324828	CUP0090	CUP0089			TRUE	0.600	28.000	0.000	1.000	Y	NA
2324830	2324831	CUP0087	CUP0086		hyaC	TRUE	0.934	30.000	0.277	1.000	Y	NA
2324831	2324832	CUP0086	CUP0085	hyaC		TRUE	0.993	10.000	0.270	0.040	Y	NA
2324832	2324833	CUP0085	CUP0084			TRUE	0.999	3.000	0.951	0.001	Y	NA
2324833	2324834	CUP0084	CUP0083			FALSE	0.089	105.000	0.009	1.000	N	NA
2324834	2324835	CUP0083	CUP0082			TRUE	0.932	-3.000	0.020	1.000	N	NA
2324835	2324836	CUP0082	CUP0081			TRUE	0.958	0.000	0.050	1.000		NA
2324836	2324837	CUP0081	CUP0080		tyrS	TRUE	0.955	-3.000	0.043	1.000		NA
2324837	2324838	CUP0080	CUP0079	tyrS	spoT	TRUE	0.875	13.000	0.045	1.000	N	NA
2324838	2324839	CUP0079	CUP0078	spoT	rpoZ	TRUE	0.950	-16.000	0.018	1.000	Y	NA
2324839	2324840	CUP0078	CUP0077	rpoZ	pyrH	TRUE	0.657	17.000	0.004	1.000	N	NA
2324840	2324841	CUP0077	CUP0076	pyrH		FALSE	0.266	51.000	0.009	1.000	N	NA
2324841	2324842	CUP0076	CUP0075			TRUE	0.959	-3.000	0.057	1.000		NA
2324842	2324843	CUP0075	CUP0074			TRUE	0.927	-13.000	0.024	1.000		NA
2324843	2324844	CUP0074	CUP0073			FALSE	0.475	48.000	0.044	1.000		NA
2324844	2324845	CUP0073	CUP0072			TRUE	0.959	0.000	0.060	NA		NA
2324845	2324846	CUP0072	CUP0071		rluD	TRUE	0.836	-52.000	0.031	NA		NA
2324847	2324848	CUP0070	CUP_tRNA-Met-1	rodA		FALSE	0.101	60.000	0.000	NA		NA
2324848	2324849	CUP_tRNA-Met-1	CUP0068			FALSE	0.160	47.000	0.000	NA		NA
2324849	2324850	CUP0068	CUP0067			FALSE	0.144	50.000	0.000	NA		NA
2324850	2324851	CUP0067	CUP0066			TRUE	0.809	-3.000	0.000	NA		NA
2324851	2324852	CUP0066	CUP0065			TRUE	0.715	-16.000	0.000	NA		NA
2324852	2324853	CUP0065	CUP0064			TRUE	0.598	-28.000	0.000	NA		NA
2324853	2324854	CUP0064	CUP0063			TRUE	0.835	-6.000	0.000	NA		NA
2324854	2324855	CUP0063	CUP0062			TRUE	0.927	0.000	0.015	1.000		NA
2324855	2324856	CUP0062	CUP0061			TRUE	0.954	-3.000	0.043	1.000		NA
2324856	2324857	CUP0061	CUP0060			TRUE	0.965	-3.000	0.083	NA		NA
2324857	2324858	CUP0060	CUP0059			FALSE	0.495	45.000	0.037	NA		NA
2324859	2324860	CUP0058	CUP0057	argS		TRUE	0.906	10.000	0.011	1.000	N	NA
2324860	2324861	CUP0057	CUP0056		gmk	TRUE	0.911	2.000	0.009	1.000	N	NA
2324861	2324862	CUP0056	CUP0055	gmk		TRUE	0.887	-3.000	0.002	NA		NA
2324862	2324863	CUP0055	CUP0054		fliR	FALSE	0.121	55.000	0.000	NA		NA
2324863	2324864	CUP0054	CUP0053	fliR		TRUE	0.932	-13.000	0.032	1.000	N	NA
2324864	2324865	CUP0053	CUP0052		tsf	TRUE	0.935	2.000	0.019	1.000	N	NA
2324865	2324866	CUP0052	CUP0051	tsf	rpsB	TRUE	0.997	0.000	0.748	1.000	Y	NA
2324866	2324867	CUP0051	CUP0050	rpsB		FALSE	0.065	117.000	0.003	1.000	N	NA
2324867	2324868	CUP0050	CUP0049		petC	FALSE	0.184	127.000	0.087	1.000	N	NA
2324868	2324869	CUP0049	CUP0048	petC	petB	TRUE	0.989	-3.000	0.103	0.002	Y	NA
2324869	2324870	CUP0048	CUP0047	petB	petA	TRUE	0.989	2.000	0.093	0.002	Y	NA
2324870	2324871	CUP0047	CUP0046	petA	gidA	FALSE	0.062	124.000	0.003	1.000	N	NA
2324871	2324872	CUP0046	CUP0045	gidA		FALSE	0.209	56.000	0.004	1.000		NA
2324872	2324873	CUP0045	CUP0044			TRUE	0.995	3.000	0.556	0.009		NA
2324873	2324874	CUP0044	CUP0043			TRUE	0.628	90.000	0.444	0.009		NA
2324875	2324876	CUP0042	CUP0041		dctA	FALSE	0.101	60.000	0.000	NA		NA
2324877	2324878	CUP0040	CUP0039			TRUE	0.826	-7.000	0.000	NA		NA
2324880	2324881	CUP0037	CUP0036		hit	TRUE	0.915	-16.000	0.030	NA		NA
2324881	2324882	CUP0036	CUP0035	hit	trpC	TRUE	0.945	0.000	0.026	1.000	N	NA
2324882	2324883	CUP0035	CUP0034	trpC		TRUE	0.940	-13.000	0.044	1.000		NA
2324883	2324884	CUP0034	CUP0033			TRUE	0.953	-27.000	0.228	NA		NA
2324884	2324885	CUP0033	CUP0032			TRUE	0.913	-22.000	0.064	NA		NA
2324885	2324886	CUP0032	CUP_CutmRNA1			TRUE	0.560	14.000	0.000	NA		NA
2324886	2324887	CUP_CutmRNA1	CUP0030			TRUE	0.833	3.000	0.000	NA		NA
2324888	2324889	CUP0029	CUP0028			TRUE	0.863	10.000	0.000	0.009		NA
2324889	2324890	CUP0028	CUP0027			TRUE	0.727	11.000	0.000	1.000		NA
2324890	2324891	CUP0027	CUP0026			TRUE	0.967	10.000	0.100	NA		NA
2324891	2324892	CUP0026	CUP0025			TRUE	0.812	0.000	0.000	NA		NA
2324892	2324893	CUP0025	CUP0024			FALSE	0.098	61.000	0.000	NA		NA
2324893	2324894	CUP0024	CUP0023			FALSE	0.023	361.000	0.000	NA		NA
2324894	2324895	CUP0023	CUP0022		polA	FALSE	0.383	51.000	0.000	0.062	Y	NA
2324895	2324896	CUP0022	CUP0021	polA		TRUE	0.684	16.000	0.006	1.000	N	NA
2324896	2324897	CUP0021	CUP0020			TRUE	0.989	3.000	0.119	1.000	Y	NA
2324900	2324901	CUP0017	CUP0016	tpx		FALSE	0.042	104.000	0.000	NA		NA
2324901	2324902	CUP0016	CUP0015		uvrD	FALSE	0.036	117.000	0.000	NA		NA
2324903	2324904	CUP0014	CUP0013		valS	TRUE	0.753	13.000	0.005	NA		NA
2324904	2324905	CUP0013	CUP0012	valS		TRUE	0.908	2.000	0.007	1.000	N	NA
2324905	2324906	CUP0012	CUP0011			TRUE	0.878	57.000	0.511	1.000	Y	NA
2324906	2324907	CUP0011	CUP0010			FALSE	0.397	161.000	0.154	NA	Y	NA
2324907	2324908	CUP0010	CUP0009			TRUE	0.964	39.000	0.800	NA	Y	NA
2324908	2324909	CUP0009	CUP0008			TRUE	0.998	10.000	1.000	NA	Y	NA
2324909	2324910	CUP0008	CUP0007			TRUE	0.953	9.000	0.028	NA	N	NA
2324910	2324911	CUP0007	CUP0006		ubiX	TRUE	0.979	-3.000	0.191	NA	N	NA
2324911	2324912	CUP0006	CUP0005	ubiX		TRUE	0.815	2.000	0.000	1.000	N	NA
2324913	2324914	CUP0004	CUP0003			TRUE	0.545	-42.000	0.000	NA		NA
2324914	2324915	CUP0003	CUP0002			FALSE	0.134	52.000	0.000	NA		NA
2324915	2324916	CUP0002	CUP0001			FALSE	0.340	27.000	0.000	NA		NA
2324917	2324918	CUP1119	CUP1120	aroK		TRUE	0.788	-12.000	0.000	1.000		NA
2324918	2324919	CUP1120	CUP1121			TRUE	0.957	-10.000	0.062	1.000		NA
2324919	2324920	CUP1121	CUP1122			TRUE	0.817	-3.000	0.000	1.000		NA
2324923	2324924	CUP1125	CUP1126			TRUE	0.996	0.000	0.509	1.000	Y	NA
2324924	2324925	CUP1126	CUP1127		psaC	TRUE	0.997	-7.000	0.616	1.000	Y	NA
2324925	2324926	CUP1127	CUP1128	psaC	flgG_1	FALSE	0.082	65.000	0.000	1.000	N	NA
2324926	2324927	CUP1128	CUP1129	flgG_1	flgG	TRUE	0.964	27.000	0.377	0.008	Y	NA
2324928	2324929	CUP1130	CUP1131	hpkA		TRUE	0.948	8.000	0.019	1.000		NA
2324933	2324934	CUP1135	CUP1136			TRUE	0.991	-3.000	0.467	NA		NA
2324934	2324935	CUP1136	CUP1137			FALSE	0.148	49.000	0.000	NA		NA
2324935	2324936	CUP1137	CUP1138			TRUE	0.809	-3.000	0.000	NA		NA
2324936	2324937	CUP1138	CUP1139			TRUE	0.974	-7.000	0.115	NA		NA
2324937	2324938	CUP1139	CUP1140			TRUE	0.962	-3.000	0.065	1.000		NA
2324938	2324939	CUP1140	CUP1141			TRUE	0.837	-4.000	0.000	NA		NA
2324939	2324940	CUP1141	CUP1142		carB	TRUE	0.848	5.000	0.000	NA		NA
2324940	2324941	CUP1142	CUP1143	carB		FALSE	0.256	58.000	0.016	1.000	N	NA
2324941	2324942	CUP1143	CUP1144			TRUE	0.994	-10.000	0.689	1.000	N	NA
2324942	2324943	CUP1144	CUP1145		clpX	TRUE	0.918	11.000	0.034	1.000	N	NA
2324943	2324944	CUP1145	CUP1146	clpX	lpxA	TRUE	0.950	-7.000	0.027	1.000	N	NA
2324944	2324945	CUP1146	CUP1147	lpxA	fabZ	TRUE	0.987	8.000	0.264	1.000	N	NA
2324945	2324946	CUP1147	CUP1148	fabZ		FALSE	0.069	73.000	0.000	NA		NA
2324946	2324947	CUP1148	CUP1149			TRUE	0.809	-3.000	0.000	NA		NA
2324947	2324948	CUP1149	CUP1150		bcp	TRUE	0.899	-3.000	0.006	NA		NA
2324948	2324949	CUP1150	CUP1151	bcp		TRUE	0.910	-3.000	0.008	1.000		NA
2324950	2324951	CUP1152	CUP1153			TRUE	0.999	-3.000	1.000	0.002	Y	NA
2324951	2324952	CUP1153	CUP1154			TRUE	0.989	-10.000	0.182	1.000	Y	NA
2324952	2324953	CUP1154	CUP1155			TRUE	0.996	-13.000	0.692	1.000	Y	NA
2324953	2324954	CUP1155	CUP1156			TRUE	0.961	-16.000	0.154	1.000	N	NA
2324954	2324955	CUP1156	CUP1157			TRUE	0.937	0.000	0.022	1.000	N	NA
2324955	2324956	CUP1157	CUP1158		ilvE	TRUE	0.543	45.000	0.008	1.000	Y	NA
2324956	2324957	CUP1158	CUP1159	ilvE		TRUE	0.966	10.000	0.098	1.000	N	NA
2324957	2324958	CUP1159	CUP1160			FALSE	0.328	70.000	0.075	NA		NA
2324958	2324959	CUP1160	CUP1161			TRUE	0.996	0.000	0.867	NA		NA
2324959	2324960	CUP1161	CUP1162			TRUE	0.820	2.000	0.000	NA		NA
2324961	2324962	CUP1163	CUP1164		dapF	TRUE	0.806	-25.000	0.010	1.000		NA
2324962	2324963	CUP1164	CUP1165	dapF		TRUE	0.935	3.000	0.016	1.000	N	NA
2324964	2324965	CUP1166	CUP1167	purM		TRUE	0.882	-3.000	0.003	NA	N	NA
2324965	2324966	CUP1167	CUP1168			FALSE	0.499	-139.000	0.000	NA		NA
2324966	2324967	CUP1168	CUP1169			TRUE	0.681	-19.000	0.000	NA		NA
2324967	2324968	CUP1169	CUP1170			FALSE	0.025	282.000	0.000	NA		NA
2324971	2324972	CUP1173	CUP1174			TRUE	0.995	-7.000	0.418	1.000	Y	NA
2324972	2324973	CUP1174	CUP1175			TRUE	0.809	-3.000	0.000	NA		NA
2324973	2324974	CUP1175	CUP1176			TRUE	0.812	0.000	0.000	NA		NA
2324974	2324975	CUP1176	CUP1177			TRUE	0.964	-13.000	0.131	1.000	N	NA
2324975	2324976	CUP1177	CUP1178			TRUE	0.976	-3.000	0.144	1.000		NA
2324976	2324977	CUP1178	CUP1179			TRUE	0.937	-19.000	0.088	1.000		NA
2324977	2324978	CUP1179	CUP1180			TRUE	0.988	-3.000	0.131	1.000	Y	NA
2324978	2324979	CUP1180	CUP1181			TRUE	0.993	-19.000	0.549	1.000	Y	NA
2324979	2324980	CUP1181	CUP1182			TRUE	0.849	6.000	0.000	NA		NA
2324980	2324981	CUP1182	CUP1183			FALSE	0.214	39.000	0.000	NA		NA
2324981	2324982	CUP1183	CUP1184			TRUE	0.848	5.000	0.000	NA		NA
2324982	2324983	CUP1184	CUP1185			FALSE	0.045	99.000	0.000	NA		NA
2324983	2324984	CUP1185	CUP1186			FALSE	0.144	50.000	0.000	NA		NA
2324984	2324985	CUP1186	CUP1187			FALSE	0.307	30.000	0.000	NA		NA
2324987	2324988	CUP1189	CUP1190			TRUE	0.882	-7.000	0.000	0.011		NA
2324989	2324990	CUP1191	CUP1192	gatB		TRUE	0.806	10.000	0.000	1.000		NA
2324990	2324991	CUP1192	CUP1193			TRUE	0.976	-3.000	0.143	1.000		NA
2324991	2324992	CUP1193	CUP1194			TRUE	0.959	-7.000	0.043	1.000		NA
2324992	2324993	CUP1194	CUP1195			FALSE	0.051	90.000	0.000	NA		NA
2324993	2324994	CUP1195	CUP1196			FALSE	0.067	75.000	0.000	NA		NA
2324994	2324995	CUP1196	CUP1197			FALSE	0.045	100.000	0.000	NA		NA
2324995	2324996	CUP1197	CUP1198			FALSE	0.072	71.000	0.000	NA		NA
2324997	2324998	CUP1199	CUP1200			TRUE	0.650	12.000	0.000	NA		NA
2324999	2325000	CUP1201	CUP1202			FALSE	0.414	23.000	0.000	NA		NA
2325001	2325002	CUP1203	CUP1204	fliI		FALSE	0.426	22.000	0.000	1.000	N	NA
2325002	2325003	CUP1204	CUP1205			TRUE	0.936	-3.000	0.021	NA		NA
2325003	2325004	CUP1205	CUP1206			TRUE	0.992	-3.000	0.523	NA		NA
2325004	2325005	CUP1206	CUP1207			TRUE	0.956	9.000	0.029	NA		NA
2325005	2325006	CUP1207	CUP1208		accD	TRUE	0.947	-10.000	0.035	NA		NA
2325006	2325007	CUP1208	CUP1209	accD	omp85	TRUE	0.884	10.000	0.004	1.000	N	NA
2325008	2325009	CUP1210	CUP1211			FALSE	0.077	67.000	0.000	1.000	N	NA
2325009	2325010	CUP1211	CUP1212		lpxC	TRUE	0.929	-3.000	0.000	1.000	Y	NA
2325010	2325011	CUP1212	CUP1213	lpxC		TRUE	0.593	36.000	0.035	NA		NA
2325011	2325012	CUP1213	CUP1214		thrB	TRUE	0.961	8.000	0.032	NA		NA
2325012	2325013	CUP1214	CUP1215	thrB		TRUE	0.959	-6.000	0.044	NA	N	NA
2325013	2325014	CUP1215	CUP1216		infB	TRUE	0.970	-13.000	0.171	NA	N	NA
2325014	2325015	CUP1216	CUP1217	infB	rbfA	TRUE	0.996	-3.000	0.530	1.000	Y	NA
2325015	2325016	CUP1217	CUP1218	rbfA		TRUE	0.946	-10.000	0.033	NA		NA
2325017	2325018	CUP1219	CUP1220			TRUE	0.812	0.000	0.000	NA		NA
2325019	2325020	CUP1221	CUP1222			TRUE	0.922	-28.000	0.107	1.000		NA
2325020	2325021	CUP1222	CUP1223		murE	TRUE	0.921	-19.000	0.057	1.000		NA
2325021	2325022	CUP1223	CUP1224	murE		TRUE	0.904	1.000	0.006	NA		NA
2325022	2325023	CUP1224	CUP1225			TRUE	0.912	-3.000	0.010	NA		NA
2325023	2325024	CUP1225	CUP1226		ispA	TRUE	0.826	30.000	0.167	1.000		NA
2325024	2325025	CUP1226	CUP1227	ispA	tkt	TRUE	0.987	10.000	0.375	1.000	N	NA
2325025	2325026	CUP1227	CUP1228	tkt		TRUE	0.937	-24.000	0.132	1.000	N	NA
2325026	2325027	CUP1228	CUP1229			TRUE	0.998	0.000	0.912	1.000	Y	NA
2325027	2325028	CUP1229	CUP1230			TRUE	0.998	3.000	0.912	NA	Y	NA
2325028	2325029	CUP1230	CUP1231			TRUE	0.972	-3.000	0.120	NA		NA
2325029	2325030	CUP1231	CUP1232			FALSE	0.384	53.000	0.027	NA		NA
2325030	2325031	CUP1232	CUP1233			FALSE	0.057	84.000	0.000	NA		NA
2325031	2325032	CUP1233	CUP1234		dmpI	FALSE	0.121	55.000	0.000	NA		NA
2325033	2325034	CUP1235	CUP1236			FALSE	0.047	173.000	0.000	0.004		NA
2325035	2325036	CUP1237	CUP1238	radA	dapB	FALSE	0.134	51.000	0.000	1.000	N	NA
2325036	2325037	CUP1238	CUP1239	dapB	purF	TRUE	0.942	1.000	0.022	1.000	N	NA
2325037	2325038	CUP1239	CUP1240	purF	pyrC	TRUE	0.939	3.000	0.000	1.000	Y	NA
2325039	2325040	CUP1241	CUP1242		glcD	TRUE	0.828	2.000	0.000	1.000		NA
2325040	2325041	CUP1242	CUP1243	glcD		TRUE	0.988	-10.000	0.404	NA		NA
2325043	2325044	CUP1245	CUP1246			TRUE	0.812	0.000	0.000	NA		NA
2325044	2325045	CUP1246	CUP1247			TRUE	0.826	-7.000	0.000	NA		NA
2325045	2325046	CUP1247	CUP1248		rmlA2	FALSE	0.062	79.000	0.000	NA		NA
2325046	2325047	CUP1248	CUP1249	rmlA2	gmhA	TRUE	0.977	0.000	0.154	1.000	N	NA
2325047	2325048	CUP1249	CUP1250	gmhA		TRUE	0.977	-3.000	0.148	1.000		NA
2325048	2325049	CUP1250	CUP1251			TRUE	0.590	38.000	0.050	NA		NA
2325049	2325050	CUP1251	CUP1252			TRUE	0.960	10.000	0.074	NA		NA
2325050	2325051	CUP1252	CUP1253		gmd	FALSE	0.382	24.000	0.000	NA		NA
2325051	2325052	CUP1253	CUP1254	gmd		TRUE	0.798	10.000	0.000	NA		NA
2325052	2325053	CUP1254	CUP1255		fcl	FALSE	0.208	41.000	0.000	1.000		NA
2325053	2325054	CUP1255	CUP1256	fcl		TRUE	0.934	2.000	0.000	1.000	Y	NA
2325054	2325055	CUP1256	CUP1257		fcl	TRUE	0.996	2.000	0.500	1.000	Y	NA
2325055	2325056	CUP1257	CUP1258	fcl	fcl	TRUE	0.994	-18.000	0.500	0.002	Y	NA
2325056	2325057	CUP1258	CUP1259	fcl		TRUE	0.826	-7.000	0.000	NA		NA
2325058	2325059	CUP1501	CUP1502			TRUE	0.836	9.000	0.000	NA		NA
2325062	2325063	CUP_Cu5SE	CUP1506	rrfE		TRUE	0.848	7.000	0.000	NA		NA
2325063	2325064	CUP1506	CUP_Cu23SD		rrlD	FALSE	0.025	252.000	0.000	NA		NA
2325064	2325065	CUP_Cu23SD	CUP1508	rrlD		FALSE	0.031	160.000	0.000	NA		NA
2325065	2325066	CUP1508	CUP1509		metK	FALSE	0.023	379.000	0.000	NA		NA
2325066	2325067	CUP1509	CUP1510	metK		FALSE	0.024	400.000	0.000	1.000		NA
2325067	2325068	CUP1510	CUP1511			TRUE	0.956	5.000	0.011	0.002		NA
2325068	2325069	CUP1511	CUP_tRNA-Ile-3			FALSE	0.022	454.000	0.000	NA		NA
2325069	2325070	CUP_tRNA-Ile-3	CUP_tRNA-Ala-4			TRUE	0.846	8.000	0.000	NA		NA
2325070	2325071	CUP_tRNA-Ala-4	CUP_Cu16SC		rrsC	FALSE	0.037	114.000	0.000	NA		NA
2325071	2325072	CUP_Cu16SC	CUP1515	rrsC		FALSE	0.024	349.000	0.000	NA		NA
2325072	2325073	CUP1515	CUP1516			FALSE	0.262	96.000	0.095	NA		NA
2325073	2325074	CUP1516	CUP1517			TRUE	0.971	-16.000	0.237	NA		NA
2325074	2325075	CUP1517	CUP1518			FALSE	0.175	45.000	0.000	NA		NA
2325075	2325076	CUP1518	CUP1519			TRUE	0.620	-25.000	0.000	NA		NA
2325076	2325077	CUP1519	CUP1520			TRUE	0.512	-76.000	0.000	NA		NA
2325077	2325078	CUP1520	CUP1521			FALSE	0.448	21.000	0.000	NA		NA
2325079	2325080	CUP1522	CUP1523		phnA	TRUE	0.962	0.000	0.009	1.000	Y	NA
2325080	2325081	CUP1523	CUP1524	phnA		TRUE	0.925	9.000	0.009	1.000		NA
2325082	2325083	CUP1525	CUP1526	dnaE		FALSE	0.064	77.000	0.000	NA		NA
2325083	2325084	CUP1526	CUP1527		thiJ	FALSE	0.027	211.000	0.000	NA		NA
2325084	2325085	CUP1527	CUP1528	thiJ		FALSE	0.148	49.000	0.000	NA		NA
2325085	2325086	CUP1528	CUP1529			FALSE	0.073	70.000	0.000	NA		NA
2325086	2325087	CUP1529	CUP1530			TRUE	0.962	9.000	0.047	NA		NA
2325087	2325088	CUP1530	CUP1531		moaC	TRUE	0.931	11.000	0.057	NA		NA
2325089	2325090	CUP1532	CUP1533		proP	TRUE	0.812	0.000	0.000	NA		NA
2325091	2325092	CUP1534	CUP1535			TRUE	0.937	20.000	0.333	NA		NA
2325092	2325093	CUP1535	CUP1536		rplT	FALSE	0.042	98.000	0.000	NA	N	NA
2325093	2325094	CUP1536	CUP1537	rplT		TRUE	0.904	86.000	0.928	0.023	Y	NA
2325095	2325096	CUP1538	CUP1539			FALSE	0.127	54.000	0.000	NA		NA
2325096	2325097	CUP1539	CUP1540			FALSE	0.434	136.000	0.429	NA		NA
2325097	2325098	CUP1540	CUP1541			FALSE	0.352	61.000	0.052	1.000	N	NA
2325098	2325099	CUP1541	CUP1542			TRUE	0.905	10.000	0.011	1.000	N	NA
2325100	2325101	CUP1543	CUP1544		pgi	FALSE	0.143	79.000	0.011	1.000	N	NA
2325101	2325102	CUP1544	CUP1545	pgi	galU	TRUE	0.949	-6.000	0.023	1.000	N	NA
2325102	2325103	CUP1545	CUP1546	galU		FALSE	0.023	442.000	0.000	NA		NA
2325106	2325107	CUP1549	CUP1550			FALSE	0.461	20.000	0.000	NA		NA
2325108	2325109	CUP1551	CUP1552			FALSE	0.033	129.000	0.000	NA		NA
2325109	2325110	CUP1552	CUP1553			FALSE	0.026	223.000	0.000	NA		NA
2325112	2325113	CUP1555	CUP1556		rpmA	FALSE	0.023	434.000	0.000	NA		NA
2325113	2325114	CUP1556	CUP1557	rpmA	rplU	TRUE	0.997	10.000	0.667	0.023	Y	NA
2325114	2325115	CUP1557	CUP1558	rplU		FALSE	0.078	107.000	0.005	NA		NA
2325115	2325116	CUP1558	CUP1559			TRUE	0.982	11.000	0.414	NA		NA
2325116	2325117	CUP1559	CUP1560			FALSE	0.338	72.000	0.087	NA		NA
2325117	2325118	CUP1560	CUP1561			TRUE	0.968	16.000	0.516	NA		NA
2325118	2325119	CUP1561	CUP1562			TRUE	0.972	12.000	0.372	NA		NA
2325120	2325121	CUP1563	CUP1564	dapD	sdaC	TRUE	0.922	10.000	0.000	NA	Y	NA
2325123	2325124	CUP1566	CUP1567			FALSE	0.023	358.000	0.000	NA		NA
2325124	2325125	CUP1567	CUP1568			TRUE	0.798	10.000	0.000	NA		NA
2325125	2325126	CUP1568	CUP1569			FALSE	0.028	194.000	0.000	NA		NA
2325127	2325128	CUP_tRNA-Ser-3	CUP_tRNA-Cys-1			TRUE	0.844	4.000	0.000	NA		NA
2325128	2325129	CUP_tRNA-Cys-1	CUP_tRNA-Leu-4			FALSE	0.382	24.000	0.000	NA		NA
2325129	2325130	CUP_tRNA-Leu-4	CUP_tRNA-Gly-2			TRUE	0.844	4.000	0.000	NA		NA
2325130	2325131	CUP_tRNA-Gly-2	CUP1574			FALSE	0.098	61.000	0.000	NA		NA
2325132	2325133	CUP1575	CUP1576	mutY		TRUE	0.805	-10.000	0.000	1.000		NA
2325133	2325134	CUP1576	CUP1577		mod_1	FALSE	0.119	56.000	0.000	1.000		NA
2325134	2325135	CUP1577	CUP1578	mod_1	res_1	TRUE	0.969	-19.000	0.200	0.058		NA
2325135	2325136	CUP1578	CUP1579	res_1		FALSE	0.080	69.000	0.000	1.000		NA
2325138	2325139	CUP1581	CUP1582	aspA		TRUE	0.881	24.000	0.195	1.000		NA
2325139	2325140	CUP1582	CUP1583			FALSE	0.058	83.000	0.000	NA		NA
2325140	2325141	CUP1583	CUP1584			FALSE	0.035	121.000	0.000	NA		NA
2325141	2325142	CUP1584	CUP1585			TRUE	0.833	3.000	0.000	NA		NA
2325142	2325143	CUP1585	CUP1586			FALSE	0.022	623.000	0.000	NA		NA
2325143	2325144	CUP1586	CUP1587			TRUE	0.650	-22.000	0.000	NA		NA
2325146	2325147	CUP1589	CUP1590			TRUE	0.796	-10.000	0.000	NA		NA
2325147	2325148	CUP1590	CUP1591			TRUE	0.812	0.000	0.000	NA		NA
2325150	2325151	CUP1593	CUP1594			TRUE	0.849	6.000	0.000	NA		NA
2325153	2325154	CUP1596	CUP1597			FALSE	0.287	43.000	0.000	0.001		NA
2325154	2325155	CUP1597	CUP1598			TRUE	0.968	-3.000	0.091	1.000		NA
2325155	2325156	CUP1598	CUP1599			TRUE	0.988	9.000	0.273	1.000		NA
2325157	2325158	CUP1600	CUP1601			TRUE	0.804	-3.000	0.000	1.000	N	NA
2325158	2325159	CUP1601	CUP1602			TRUE	0.969	-3.000	0.105	1.000	N	NA
2325159	2325160	CUP1602	CUP1603			TRUE	0.715	-16.000	0.000	NA		NA
2325161	2325162	CUP1604	CUP1605			FALSE	0.099	97.000	0.007	NA		NA
2325162	2325163	CUP1605	CUP1606		frr	TRUE	0.922	10.000	0.017	1.000	N	NA
2325163	2325164	CUP1606	CUP1607	frr	pyrE	TRUE	0.951	3.000	0.026	1.000	N	NA
2325164	2325165	CUP1607	CUP1608	pyrE		TRUE	0.963	0.000	0.071	NA		NA
2325165	2325166	CUP1608	CUP1609			TRUE	0.970	3.000	0.086	NA		NA
2325166	2325167	CUP1609	CUP1610			TRUE	0.833	-94.000	0.048	1.000	N	NA
2325168	2325169	CUP1611	CUP1612			TRUE	0.624	52.000	0.174	1.000	N	NA
2325169	2325170	CUP1612	CUP1613			TRUE	0.985	2.000	0.217	0.073	N	NA
2325170	2325171	CUP1613	CUP1614			TRUE	0.998	-13.000	1.000	0.029	Y	NA
2325171	2325172	CUP1614	CUP1615			TRUE	0.994	12.000	1.000	0.029	N	NA
2325172	2325173	CUP1615	CUP1616			TRUE	0.911	11.000	0.027	NA		NA
2325174	2325175	CUP1617	CUP1618			TRUE	0.997	0.000	0.618	0.025	Y	NA
2325175	2325176	CUP1618	CUP1619		potA	TRUE	0.989	-13.000	0.529	1.000	N	NA
2325176	2325177	CUP1619	CUP1620	potA		TRUE	0.682	36.000	0.014	1.000	Y	NA
2325177	2325178	CUP1620	CUP1621			TRUE	0.826	-7.000	0.000	NA		NA
2325178	2325179	CUP1621	CUP1622		purA	FALSE	0.033	131.000	0.000	NA		NA
2325179	2325180	CUP1622	CUP1623	purA		TRUE	0.923	-3.000	0.014	NA		NA
2325180	2325181	CUP1623	CUP1624			TRUE	0.978	-7.000	0.147	NA		NA
2325181	2325182	CUP1624	CUP1625			FALSE	0.425	66.000	0.120	NA		NA
2325182	2325183	CUP1625	CUP1626		carA	TRUE	0.952	-3.000	0.041	NA		NA
2325183	2325184	CUP1626	CUP1627	carA		TRUE	0.917	-3.000	0.011	1.000		NA
2325185	2325186	CUP1628	CUP1629	rnhB	rr2	TRUE	0.887	0.000	0.002	1.000	N	NA
2325186	2325187	CUP1629	CUP1630	rr2	flgG-1	FALSE	0.045	98.000	0.000	1.000	N	NA
2325187	2325188	CUP1630	CUP1631	flgG-1		TRUE	0.995	4.000	0.341	NA	Y	NA
2325188	2325189	CUP1631	CUP1632			TRUE	0.593	56.000	0.184	NA		NA
2325189	2325190	CUP1632	CUP1633			TRUE	0.949	15.000	0.286	1.000		NA
2325191	2325192	CUP1634	CUP1635	typA		TRUE	0.900	0.000	0.006	NA		NA
2325195	2325196	CUP1638	CUP1639			FALSE	0.025	308.000	0.000	NA		NA
2325196	2325197	CUP1639	CUP1640			FALSE	0.073	70.000	0.000	NA		NA
2325197	2325198	CUP1640	CUP1641			FALSE	0.022	902.000	0.000	NA		NA
2325198	2325199	CUP1641	CUP1642			TRUE	0.817	-3.000	0.000	1.000		NA
2325199	2325200	CUP1642	CUP1643		rpsI	FALSE	0.259	35.000	0.000	1.000		NA
2325201	2325202	CUP1118	CUP1117		trpS	TRUE	0.960	-3.000	0.033	0.095		NA
2325202	2325203	CUP1117	CUP1116	trpS	serS	TRUE	0.574	48.000	0.010	0.042	Y	NA
2325203	2325204	CUP1116	CUP1115	serS		TRUE	0.935	9.000	0.014	1.000		NA
2325205	2325206	CUP1114	CUP1113	recJ	pyrG	TRUE	0.907	-16.000	0.026	1.000	N	NA
2325207	2325208	CUP1112	CUP1111			FALSE	0.469	19.000	0.000	NA		NA
2325208	2325209	CUP1111	CUP1110		gltP	FALSE	0.128	85.000	0.009	1.000		NA
2325210	2325211	CUP1109	CUP1108		maeB	TRUE	0.925	9.000	0.010	NA		NA
2325211	2325212	CUP1108	CUP1107	maeB	gltX	TRUE	0.936	-3.000	0.021	1.000	N	NA
2325214	2325215	CUP1105	CUP1104		pvdS	TRUE	0.633	-25.000	0.000	1.000		NA
2325216	2325217	CUP1103	CUP1102			TRUE	0.981	0.000	0.185	1.000		NA
2325217	2325218	CUP1102	CUP1101			TRUE	0.964	11.000	0.160	1.000		NA
2325219	2325220	CUP1100	CUP1099			TRUE	0.969	2.000	0.093	1.000	N	NA
2325220	2325221	CUP1099	CUP1098			TRUE	0.973	-10.000	0.133	1.000		NA
2325221	2325222	CUP1098	CUP1097		fba	FALSE	0.240	73.000	0.027	1.000		NA
2325222	2325223	CUP1097	CUP1096	fba		TRUE	0.951	0.000	0.036	1.000	N	NA
2325224	2325225	CUP1095	CUP1094	nth		TRUE	0.921	-3.000	0.004	0.005	N	NA
2325225	2325226	CUP1094	CUP1093			TRUE	0.951	0.000	0.033	NA		NA
2325226	2325227	CUP1093	CUP1092			TRUE	0.927	-3.000	0.017	NA		NA
2325228	2325229	CUP1091	CUP1090			TRUE	0.979	10.000	0.200	NA		NA
2325229	2325230	CUP1090	CUP1089			TRUE	0.989	-3.000	0.400	NA		NA
2325230	2325231	CUP1089	CUP1088		htpG	TRUE	0.897	-3.000	0.007	NA	N	NA
2325231	2325232	CUP1088	CUP1087	htpG		FALSE	0.210	54.000	0.003	1.000	N	NA
2325232	2325233	CUP1087	CUP1086			TRUE	0.990	-25.000	0.846	NA		NA
2325233	2325234	CUP1086	CUP1085		purQ	TRUE	0.952	-3.000	0.038	NA		NA
2325234	2325235	CUP1085	CUP1084	purQ	purS	TRUE	0.997	10.000	0.656	0.002	Y	NA
2325235	2325236	CUP1084	CUP1083	purS	purC	TRUE	0.995	10.000	0.460	1.000	Y	NA
2325236	2325237	CUP1083	CUP1082	purC	prc	TRUE	0.956	2.000	0.045	1.000	N	NA
2325238	2325239	CUP1081	CUP1080			FALSE	0.364	25.000	0.000	NA		NA
2325239	2325240	CUP1080	CUP1079			FALSE	0.320	84.000	0.108	NA		NA
2325240	2325241	CUP1079	CUP1078			FALSE	0.027	219.000	0.000	NA		NA
2325243	2325244	CUP1076	CUP1075	accB		TRUE	0.988	1.000	0.071	0.003	Y	NA
2325244	2325245	CUP1075	CUP1074			FALSE	0.085	63.000	0.000	1.000	N	NA
2325246	2325247	CUP1073	CUP1072	gidB	ribA	TRUE	0.925	-3.000	0.017	1.000	N	NA
2325248	2325249	CUP1071	CUP1070	hemB	argF	TRUE	0.934	0.000	0.020	1.000	N	NA
2325249	2325250	CUP1070	CUP1069	argF		TRUE	0.945	-3.000	0.025	1.000		NA
2325250	2325251	CUP1069	CUP1068		hemN	TRUE	0.987	-13.000	0.419	1.000		NA
2325251	2325252	CUP1068	CUP1067	hemN	glpC	TRUE	0.992	0.000	0.419	0.020	N	NA
2325252	2325253	CUP1067	CUP1066	glpC		TRUE	0.804	-3.000	0.000	1.000	N	NA
2325253	2325254	CUP1066	CUP1065			TRUE	0.994	-3.000	0.355	NA	Y	NA
2325254	2325255	CUP1065	CUP1064			TRUE	0.973	-3.000	0.137	NA	N	NA
2325255	2325256	CUP1064	CUP1063			TRUE	0.986	-3.000	0.103	1.000	Y	NA
2325256	2325257	CUP1063	CUP1062			TRUE	0.511	17.000	0.000	1.000		NA
2325257	2325258	CUP1062	CUP1061			FALSE	0.045	170.000	0.000	0.012		NA
2325258	2325259	CUP1061	CUP1060			TRUE	0.796	-10.000	0.000	NA		NA
2325259	2325260	CUP1060	CUP1059			TRUE	0.837	-4.000	0.000	NA		NA
2325260	2325261	CUP1059	CUP1058			FALSE	0.326	28.000	0.000	NA		NA
2325262	2325263	CUP1057	CUP1056	prfA	rpsT	TRUE	0.978	1.000	0.029	1.000	Y	NA
2325263	2325264	CUP1056	CUP1055	rpsT	pgpA	FALSE	0.116	77.000	0.004	1.000	N	NA
2325264	2325265	CUP1055	CUP1054	pgpA		TRUE	0.958	2.000	0.052	1.000	N	NA
2325265	2325266	CUP1054	CUP1053			TRUE	0.812	-22.000	0.009	1.000	N	NA
2325266	2325267	CUP1053	CUP1052			TRUE	0.892	0.000	0.004	1.000	N	NA
2325269	2325270	CUP1050	CUP1049			FALSE	0.041	104.000	0.000	1.000	N	NA
2325270	2325271	CUP1049	CUP1048			TRUE	0.986	12.000	0.667	NA		NA
2325272	2325273	CUP1047	CUP1046			TRUE	0.994	-15.000	0.412	0.024	Y	NA
2325273	2325274	CUP1046	CUP1045			TRUE	0.997	-3.000	0.647	0.024	Y	NA
2325274	2325275	CUP1045	CUP1044			TRUE	0.929	-3.000	0.000	1.000	Y	NA
2325275	2325276	CUP1044	CUP1043		nikE	TRUE	0.998	-7.000	0.684	0.015	Y	NA
2325276	2325277	CUP1043	CUP1042	nikE	nuoA	FALSE	0.165	114.000	0.053	1.000	N	NA
2325277	2325278	CUP1042	CUP1041	nuoA		TRUE	0.995	-18.000	0.571	0.004	Y	NA
2325278	2325279	CUP1041	CUP1040		nuoC	TRUE	0.998	0.000	0.703	0.004	Y	NA
2325279	2325280	CUP1040	CUP1039	nuoC	nuoD	TRUE	0.998	2.000	0.650	0.010	Y	NA
2325280	2325281	CUP1039	CUP1038	nuoD		TRUE	0.995	-3.000	0.650	0.010		NA
2325281	2325282	CUP1038	CUP1037			TRUE	0.993	-3.000	0.464	0.010		NA
2325282	2325283	CUP1037	CUP1036			TRUE	0.992	-3.000	0.444	0.010		NA
2325283	2325284	CUP1036	CUP1035			TRUE	0.987	-7.000	0.065	0.010	Y	NA
2325284	2325285	CUP1035	CUP1034			TRUE	0.997	9.000	0.500	0.010	Y	NA
2325285	2325286	CUP1034	CUP1033		nuoJ	TRUE	0.996	0.000	0.442	0.010	Y	NA
2325286	2325287	CUP1033	CUP1032	nuoJ	nuoK	TRUE	0.986	-3.000	0.064	0.004	Y	NA
2325287	2325288	CUP1032	CUP1031	nuoK	nuoL	TRUE	0.986	2.000	0.056	0.010	Y	NA
2325288	2325289	CUP1031	CUP1030	nuoL	nuoM	TRUE	0.986	1.000	0.056	0.002	Y	NA
2325289	2325290	CUP1030	CUP1029	nuoM		TRUE	0.983	-7.000	0.024	0.002	Y	NA
2325290	2325291	CUP1029	CUP1028			TRUE	0.739	21.000	0.020	1.000		NA
2325293	2325294	CUP1026	CUP1025			TRUE	0.969	-9.000	0.100	NA		NA
2325294	2325295	CUP1025	CUP1024			TRUE	0.992	-7.000	0.476	NA		NA
2325295	2325296	CUP1024	CUP1023		moaA	TRUE	0.954	0.000	0.042	NA		NA
2325296	2325297	CUP1023	CUP1022	moaA		TRUE	0.948	1.000	0.028	1.000	N	NA
2325297	2325298	CUP1022	CUP1021			TRUE	0.974	-3.000	0.139	1.000	N	NA
2325298	2325299	CUP1021	CUP1020			TRUE	0.906	0.000	0.008	NA		NA
2325299	2325300	CUP1020	CUP1019			TRUE	0.981	0.000	0.200	NA		NA
2325300	2325301	CUP1019	CUP1018			TRUE	0.927	-19.000	0.070	NA		NA
2325301	2325302	CUP1018	CUP1017		rpmE	FALSE	0.196	79.000	0.023	NA		NA
2325302	2325303	CUP1017	CUP1016	rpmE		TRUE	0.953	2.000	0.031	1.000		NA
2325303	2325304	CUP1016	CUP1015			TRUE	0.953	1.000	0.031	1.000		NA
2325304	2325305	CUP1015	CUP1014			TRUE	0.934	-13.000	0.033	NA		NA
2325305	2325306	CUP1014	CUP1013			TRUE	0.996	2.000	0.882	NA		NA
2325306	2325307	CUP1013	CUP1012		aspB-4	TRUE	0.973	3.000	0.098	NA		NA
2325307	2325308	CUP1012	CUP1011	aspB-4		TRUE	0.992	3.000	0.202	1.000	Y	NA
2325309	2325310	CUPA0027	CUPA0028			TRUE	0.809	-3.000	0.000	NA		NA
2325310	2325311	CUPA0028	CUPA0029			TRUE	0.798	10.000	0.000	NA		NA
2325311	2325312	CUPA0029	CUPA0030			FALSE	0.175	45.000	0.000	NA		NA
2325312	2325313	CUPA0030	CUPA0031			TRUE	0.826	-7.000	0.000	NA		NA
2325313	2325314	CUPA0031	CUPA0032			FALSE	0.269	34.000	0.000	1.000		NA
2325314	2325315	CUPA0032	CUPA0033			FALSE	0.153	48.000	0.000	NA		NA
2325317	2325318	CUPA0035	CUPA0036			TRUE	0.809	-3.000	0.000	NA		NA
2325318	2325319	CUPA0036	CUPA0037			FALSE	0.138	51.000	0.000	NA		NA
2325319	2325320	CUPA0037	CUPA0038			TRUE	0.833	3.000	0.000	NA		NA
2325320	2325321	CUPA0038	CUPA0039			TRUE	0.664	-21.000	0.000	NA		NA
2325321	2325322	CUPA0039	CUPA0040			FALSE	0.023	441.000	0.000	NA		NA
2325322	2325323	CUPA0040	CUPA0041			FALSE	0.043	103.000	0.000	NA		NA
2325324	2325325	CUPA0042	CUPA0043			TRUE	0.995	-15.000	1.000	1.000		NA
2325325	2325326	CUPA0043	CUPA0044			FALSE	0.026	264.000	0.000	1.000		NA
2325326	2325327	CUPA0044	CUPA_CutmRNA2			FALSE	0.493	-196.000	0.000	NA		NA
2325328	2325329	CUPA0046	CUPA0047			TRUE	0.693	51.000	0.250	NA		NA
2325330	2325331	CUPA0048	CUPA0049			TRUE	0.994	-7.000	0.667	NA		NA
2325331	2325332	CUPA0049	CUPA0050			TRUE	0.992	0.000	0.500	1.000		NA
2325332	2325333	CUPA0050	CUPA0051			TRUE	0.796	-10.000	0.000	NA		NA
2325333	2325334	CUPA0051	CUPA0052			TRUE	0.992	0.000	0.500	NA		NA
2325336	2325337	CUPA0054	CUPA0055	rep		TRUE	0.809	-3.000	0.000	NA		NA
2325337	2325338	CUPA0055	CUPA0056			TRUE	0.812	0.000	0.000	NA		NA
2325338	2325339	CUPA0056	CUPA0057			TRUE	0.650	12.000	0.000	NA		NA
11399751	2325340		CUPA0058			FALSE	NA	863.000	0.000	NA		NA
11542114	2325340		CUPA0058			FALSE	NA	863.000	0.000	NA		NA
11684506	2325340		CUPA0058			FALSE	NA	863.000	0.000	NA		NA
11399752	2325340		CUPA0058			FALSE	NA	880.000	0.000	NA		NA
11542115	2325340		CUPA0058			FALSE	NA	880.000	0.000	NA		NA
11684507	2325340		CUPA0058			FALSE	NA	880.000	0.000	NA		NA
11399753	2325340		CUPA0058			FALSE	NA	905.000	0.000	NA		NA
11542116	2325340		CUPA0058			FALSE	NA	905.000	0.000	NA		NA
11684508	2325340		CUPA0058			FALSE	NA	905.000	0.000	NA		NA
11399754	2325340		CUPA0058			FALSE	NA	924.000	0.000	NA		NA
11542117	2325340		CUPA0058			FALSE	NA	924.000	0.000	NA		NA
11684509	2325340		CUPA0058			FALSE	NA	924.000	0.000	NA		NA
11399755	2325340		CUPA0058			FALSE	NA	949.000	0.000	NA		NA
11542118	2325340		CUPA0058			FALSE	NA	949.000	0.000	NA		NA
11684510	2325340		CUPA0058			FALSE	NA	949.000	0.000	NA		NA
11399756	2325340		CUPA0058			FALSE	NA	968.000	0.000	NA		NA
11542119	2325340		CUPA0058			FALSE	NA	968.000	0.000	NA		NA
11684511	2325340		CUPA0058			FALSE	NA	968.000	0.000	NA		NA
11399757	2325340		CUPA0058			FALSE	NA	999.000	0.000	NA		NA
11542120	2325340		CUPA0058			FALSE	NA	999.000	0.000	NA		NA
11684512	2325340		CUPA0058			FALSE	NA	999.000	0.000	NA		NA
2325343	2325344	CUPA0061	CUPA0062			TRUE	0.835	-6.000	0.000	NA		NA
2325344	2325345	CUPA0062	CUPA0063			TRUE	0.779	-12.000	0.000	NA		NA
2325346	2325347	CUPA0064	CUPA0065			TRUE	0.577	-31.000	0.000	NA		NA
2325347	2325348	CUPA0065	CUPA0066			TRUE	0.798	10.000	0.000	NA		NA
2325348	2325349	CUPA0066	CUPA0067			TRUE	0.820	2.000	0.000	NA		NA
2325349	2325350	CUPA0067	CUPA0068			TRUE	0.809	-3.000	0.000	NA		NA
2325350	2325351	CUPA0068	CUPA0069			FALSE	0.026	240.000	0.000	NA		NA
2325351	2325352	CUPA0069	CUPA0070			TRUE	0.840	3.000	0.000	1.000		NA
2325352	2325353	CUPA0070	CUPA0071			FALSE	0.160	47.000	0.000	NA		NA
2325353	2325354	CUPA0071	CUPA0072			FALSE	0.023	445.000	0.000	NA		NA
2325354	2325355	CUPA0072	CUPA0073			TRUE	0.984	-3.000	0.182	0.011		NA
2325355	2325356	CUPA0073	CUPA0074			TRUE	0.597	13.000	0.000	NA		NA
2325357	2325358	CUPA0075	CUPA0076			TRUE	0.796	-10.000	0.000	NA		NA
2325359	2325360	CUPA0077	CUPA0078			TRUE	0.812	0.000	0.000	NA		NA
2325360	2325361	CUPA0078	CUPA0079			TRUE	0.833	3.000	0.000	NA		NA
2325362	2325363	CUPA0080	CUPA0081			FALSE	0.035	123.000	0.000	NA		NA
2325364	2325365	CUPA0082	CUPA0083		traL	TRUE	0.971	0.000	0.111	NA		NA
2325365	2325366	CUPA0083	CUPA0084	traL		TRUE	0.985	1.000	0.167	0.002		NA
2325366	2325367	CUPA0084	CUPA0085			TRUE	0.998	-3.000	1.000	0.002		NA
2325367	2325368	CUPA0085	CUPA0086			TRUE	0.997	-3.000	1.000	1.000		NA
2325368	2325369	CUPA0086	CUPA0087			TRUE	0.992	4.000	0.429	1.000		NA
2325369	2325370	CUPA0087	CUPA0088			TRUE	0.967	14.000	0.429	NA		NA
2325370	2325371	CUPA0088	CUPA0089			TRUE	0.981	-31.000	0.667	NA		NA
2325371	2325372	CUPA0089	CUPA0090			TRUE	0.809	-3.000	0.000	NA		NA
2325372	2325373	CUPA0090	CUPA0091			TRUE	0.994	-3.000	0.667	NA		NA
2325373	2325374	CUPA0091	CUPA0092			TRUE	0.809	-3.000	0.000	NA		NA
2325374	2325375	CUPA0092	CUPA0093			TRUE	0.598	-28.000	0.000	NA		NA
2325375	2325376	CUPA0093	CUPA0094			TRUE	0.987	-6.000	0.273	NA		NA
2325376	2325377	CUPA0094	CUPA0095			TRUE	0.986	12.000	0.667	NA		NA
2325377	2325378	CUPA0095	CUPA0097			FALSE	0.078	68.000	0.000	NA		NA
2325378	2325379	CUPA0097	CUPA_CutmRNA3			FALSE	0.485	-1188.000	0.000	NA		NA
2325379	2325380	CUPA_CutmRNA3	CUPA0098			FALSE	0.022	1076.000	0.000	NA		NA
2325380	2325381	CUPA0098	CUPA0099		traG	TRUE	0.560	14.000	0.000	NA		NA
2325382	2325383	CUPA0100	CUPA0101			FALSE	0.023	371.000	0.000	NA		NA
2325383	2325384	CUPA0101	CUPA0102			FALSE	0.026	237.000	0.000	NA		NA
2325384	2325385	CUPA0102	CUPA0103			TRUE	0.986	12.000	0.667	NA		NA
2325386	2325387	CUPA0104	CUPA0105			TRUE	0.812	0.000	0.000	NA		NA
2325387	2325388	CUPA0105	CUPA0106			FALSE	0.026	221.000	0.000	NA		NA
2325388	2325389	CUPA0106	CUPA0107			FALSE	0.023	442.000	0.000	NA		NA
2325389	2325390	CUPA0107	CUPA0108			FALSE	0.071	72.000	0.000	NA		NA
2325392	2325393	CUPA0110	CUPA0111			TRUE	0.976	9.000	0.115	NA		NA
2325393	2325394	CUPA0111	CUPA0112			TRUE	0.972	-3.000	0.115	NA		NA
2325394	2325395	CUPA0112	CUPA0113			TRUE	0.989	-3.000	0.400	NA		NA
2325395	2325396	CUPA0113	CUPA0114			TRUE	0.993	0.000	0.600	NA		NA
2325396	2325397	CUPA0114	CUPA0115			TRUE	0.716	11.000	0.000	NA		NA
2325397	2325398	CUPA0115	CUPA0116			TRUE	0.826	-7.000	0.000	NA		NA
2325398	2325399	CUPA0116	CUPA0117			TRUE	0.809	-3.000	0.000	NA		NA
2325399	2325400	CUPA0117	CUPA0118			TRUE	0.996	-3.000	0.600	NA	Y	NA
2325400	2325401	CUPA0118	CUPA0119			TRUE	0.998	-7.000	1.000	NA	Y	NA
2325401	2325402	CUPA0119	CUPA0120			TRUE	0.809	-3.000	0.000	NA		NA
2325402	2325403	CUPA0120	CUPA0121			TRUE	0.978	-3.000	0.167	NA		NA
2325403	2325404	CUPA0121	CUPA0122			TRUE	0.978	0.000	0.167	NA		NA
2325404	2325405	CUPA0122	CUPA0123			TRUE	0.973	9.000	0.095	NA		NA
2325405	2325406	CUPA0123	CUPA0124		cagT	TRUE	0.980	-3.000	0.190	NA		NA
2325406	2325407	CUPA0124	CUPA0125	cagT		TRUE	0.798	10.000	0.000	NA		NA
2325407	2325408	CUPA0125	CUPA0126			TRUE	0.812	0.000	0.000	NA		NA
2325408	2325409	CUPA0126	CUPA0127			FALSE	0.035	121.000	0.000	NA		NA
2325409	2325410	CUPA0127	CUPA0128		topB-1	FALSE	0.319	88.000	0.120	NA		NA
2325410	2325411	CUPA0128	CUPA0129	topB-1		TRUE	0.812	0.000	0.000	NA		NA
2325411	2325412	CUPA0129	CUPA0130			TRUE	0.760	-13.000	0.000	NA		NA
2325412	2325413	CUPA0130	CUPA0131			FALSE	0.029	173.000	0.000	NA		NA
2325413	2325414	CUPA0131	CUPA0132			TRUE	0.681	-19.000	0.000	NA		NA
2325414	2325415	CUPA0132	CUPA0133			TRUE	0.590	-30.000	0.000	NA		NA
2325415	2325416	CUPA0133	CUPA0134			FALSE	0.028	195.000	0.000	NA		NA
2325416	2325417	CUPA0134	CUPA0135			TRUE	0.989	-3.000	0.400	NA		NA
2325417	2325418	CUPA0135	CUPA0136			FALSE	0.035	129.000	0.000	1.000		NA
2325418	2325419	CUPA0136	CUPA0137			FALSE	0.138	53.000	0.000	1.000		NA
2325419	2325420	CUPA0137	CUPA0138			FALSE	0.026	317.000	0.000	1.000		NA
2325420	2325421	CUPA0138	CUPA0139			FALSE	0.148	49.000	0.000	NA		NA
2325421	2325422	CUPA0139	CUPA0140			FALSE	0.027	203.000	0.000	NA		NA
2325422	2325423	CUPA0140	CUPA0141			TRUE	0.735	-15.000	0.000	NA		NA
2325423	2325424	CUPA0141	CUPA0142			FALSE	0.181	44.000	0.000	NA		NA
2325424	2325425	CUPA0142	CUPA0143			TRUE	0.994	-16.000	1.000	NA		NA
2325426	2325427	CUPA0144	CUPA0146			TRUE	0.848	5.000	0.000	NA		NA
2325427	2325428	CUPA0146	CUPA0145			FALSE	0.488	-388.000	0.000	NA		NA
2325428	2325429	CUPA0145	CUPA0147			FALSE	0.022	1277.000	0.000	NA		NA
2325430	2325431	CUPA0148	CUPA0149			FALSE	0.214	39.000	0.000	NA		NA
2325432	2325433	CUP0211	CUP0210			TRUE	0.809	-3.000	0.000	NA		NA
2325434	2325435	CUP0209	CUP0208		cvpA	FALSE	0.137	70.000	0.003	1.000		NA
2325435	2325436	CUP0208	CUP0207	cvpA		TRUE	0.946	1.000	0.023	1.000		NA
2325436	2325437	CUP0207	CUP0206		lysS	TRUE	0.940	1.000	0.022	1.000	N	NA
2325437	2325438	CUP0206	CUP0205	lysS	glyA	TRUE	0.952	-3.000	0.044	1.000	N	NA
2325438	2325439	CUP0205	CUP0204	glyA		TRUE	0.985	-3.000	0.271	NA		NA
2325439	2325440	CUP0204	CUP0203			TRUE	0.974	12.000	0.387	NA		NA
2325440	2325441	CUP0203	CUP0202			TRUE	0.934	-3.000	0.020	NA		NA
2325442	2325443	CUP0201	CUP0200	murC		FALSE	0.062	96.000	0.000	0.089	N	NA
2325443	2325444	CUP0200	CUP0199			TRUE	0.992	-3.000	0.150	0.003	Y	NA
2325444	2325445	CUP0199	CUP0198			TRUE	0.836	34.000	0.060	0.054	Y	NA
2325445	2325446	CUP0198	CUP_tRNA-Ser-1			FALSE	0.039	110.000	0.000	NA		NA
2325446	2325447	CUP_tRNA-Ser-1	CUP0196			FALSE	0.102	59.000	0.000	NA		NA
2325447	2325448	CUP0196	CUP0195			FALSE	0.500	92.000	0.375	NA		NA
2325448	2325449	CUP0195	CUP0194			TRUE	0.946	15.000	0.188	0.001	N	NA
2325450	2325451	CUP0193	CUP0192			FALSE	0.098	61.000	0.000	NA		NA
2325451	2325452	CUP0192	CUP0191			TRUE	0.715	-16.000	0.000	NA		NA
2325453	2325454	CUP0190	CUP0189			FALSE	0.024	320.000	0.000	NA		NA
2325454	2325455	CUP0189	CUP0188			FALSE	0.092	62.000	0.000	NA		NA
2325455	2325456	CUP0188	CUP0187			TRUE	0.760	-13.000	0.000	NA		NA
2325456	2325457	CUP0187	CUP0186		dnaB	FALSE	0.028	190.000	0.000	NA		NA
2325457	2325458	CUP0186	CUP0185	dnaB		FALSE	0.053	89.000	0.000	NA		NA
2325458	2325459	CUP0185	CUP0184			FALSE	0.041	106.000	0.000	NA		NA
2325459	2325460	CUP0184	CUP0183			FALSE	0.249	35.000	0.000	NA		NA
2325460	2325461	CUP0183	CUP0182		ispG	FALSE	0.168	46.000	0.000	NA		NA
2325461	2325462	CUP0182	CUP0181	ispG		FALSE	0.134	51.000	0.000	1.000	N	NA
2325463	2325464	CUP0180	CUP0179			TRUE	0.908	-3.000	0.009	NA		NA
2325465	2325466	CUP0178	CUP0177	flhB		FALSE	0.042	104.000	0.000	NA		NA
2325466	2325467	CUP0177	CUP0176			FALSE	0.025	248.000	0.000	NA		NA
2325468	2325469	CUP0175	CUP0174			FALSE	0.110	106.000	0.015	1.000		NA
2325469	2325470	CUP0174	CUP0173			TRUE	0.951	0.000	0.033	NA		NA
2325470	2325471	CUP0173	CUP0172			TRUE	0.694	27.000	0.032	NA		NA
2325471	2325472	CUP0172	CUP0171		plsX	TRUE	0.992	6.000	0.418	1.000		NA
2325472	2325473	CUP0171	CUP0170	plsX	fabH	TRUE	0.971	-19.000	0.058	0.005	Y	NA
2325474	2325475	CUP0169	CUP0168	serC	xseA	TRUE	0.778	13.000	0.010	1.000	N	NA
2325475	2325476	CUP0168	CUP0167	xseA	ubiE	TRUE	0.916	-10.000	0.016	1.000	N	NA
2325476	2325477	CUP0167	CUP0166	ubiE		TRUE	0.927	6.000	0.008	NA		NA
2325477	2325478	CUP0166	CUP0165		furR1	FALSE	0.447	48.000	0.033	NA		NA
2325478	2325479	CUP0165	CUP0164	furR1	dxs	FALSE	0.157	82.000	0.017	1.000	N	NA
2325479	2325480	CUP0164	CUP0163	dxs	fliH	TRUE	0.960	-7.000	0.052	1.000	N	NA
2325480	2325481	CUP0163	CUP0162	fliH	fliG	TRUE	0.996	9.000	0.308	0.006	Y	NA
2325481	2325482	CUP0162	CUP0161	fliG	fliF	TRUE	0.997	0.000	0.477	0.009	Y	NA
2325482	2325483	CUP0161	CUP0160	fliF	hisC	FALSE	0.321	73.000	0.084	1.000	N	NA
2325484	2325485	CUP0159	CUP0158			TRUE	0.994	-9.000	0.667	NA		NA
2325485	2325486	CUP0158	CUP0157			TRUE	0.987	-3.000	0.333	NA		NA
2325487	2325488	CUP0156	CUP0155			TRUE	0.951	0.000	0.041	NA	N	NA
2325490	2325491	CUP0153	CUP0152			TRUE	0.995	10.000	0.466	1.000	Y	NA
2325491	2325492	CUP0152	CUP0151		ftsH	TRUE	0.952	-3.000	0.043	1.000	N	NA
2325492	2325493	CUP0151	CUP0150	ftsH		TRUE	0.975	-13.000	0.217	1.000	N	NA
2325493	2325494	CUP0150	CUP0149			TRUE	0.896	18.000	0.146	1.000	N	NA
2325494	2325495	CUP0149	CUP0148		pglG	FALSE	0.266	82.000	0.062	1.000		NA
2325495	2325496	CUP0148	CUP0147	pglG	pglF	TRUE	0.986	-6.000	0.242	1.000		NA
2325496	2325497	CUP0147	CUP0146	pglF	pglE	TRUE	0.988	-3.000	0.133	1.000	Y	NA
2325497	2325498	CUP0146	CUP0145	pglE	recG	FALSE	0.176	44.000	0.000	1.000	N	NA
2325498	2325499	CUP0145	CUP0144	recG		TRUE	0.963	-10.000	0.084	1.000		NA
2325499	2325500	CUP0144	CUP0143			TRUE	0.975	0.000	0.130	1.000		NA
2325502	2325503	CUP0958	CUP0959			FALSE	0.481	18.000	0.000	NA		NA
2325505	2325506	CUP0961	CUP0962			FALSE	0.032	134.000	0.000	NA		NA
2325506	2325507	CUP0962	CUP0963			FALSE	0.092	62.000	0.000	NA		NA
2325507	2325508	CUP0963	CUP0964			FALSE	0.034	125.000	0.000	NA		NA
2325509	2325510	CUP0965	CUP0966			TRUE	0.809	-3.000	0.000	NA		NA
2325510	2325511	CUP0966	CUP0967			TRUE	0.818	1.000	0.000	NA		NA
2325511	2325512	CUP0967	CUP0968			TRUE	0.796	-10.000	0.000	NA		NA
2325512	2325513	CUP0968	CUP0969			FALSE	0.031	150.000	0.000	NA		NA
2325515	2325516	CUP0971	CUP0972			TRUE	0.809	-3.000	0.000	NA		NA
2325518	2325519	CUP0974	CUP0975			TRUE	0.826	-7.000	0.000	NA		NA
2325519	2325520	CUP0975	CUP0976			TRUE	0.812	0.000	0.000	NA		NA
2325520	2325521	CUP0976	CUP0977			FALSE	0.026	225.000	0.000	NA		NA
2325521	2325522	CUP0977	CUP0978			TRUE	0.809	-3.000	0.000	NA		NA
2325522	2325523	CUP0978	CUP0979		coaD	FALSE	0.060	81.000	0.000	NA		NA
2325523	2325524	CUP0979	CUP0980	coaD	tmk	TRUE	0.950	-9.000	0.034	1.000	N	NA
2325524	2325525	CUP0980	CUP0981	tmk	hisS	TRUE	0.948	-7.000	0.018	0.087	N	NA
2325525	2325526	CUP0981	CUP0982	hisS	speA	TRUE	0.935	-3.000	0.021	1.000	N	NA
2325528	2325529	CUP0984	CUP0985	alaS		TRUE	0.923	0.000	0.015	1.000	N	NA
2325529	2325530	CUP0985	CUP0986			TRUE	0.943	-3.000	0.026	1.000	N	NA
2325534	2325535	CUP0990	CUP0991			FALSE	0.397	197.000	0.429	NA		NA
2325535	2325536	CUP0991	CUP0992			TRUE	0.855	22.000	0.105	NA		NA
2325536	2325537	CUP0992	CUP0993			TRUE	0.986	-169.000	1.000	NA		NA
2325537	2325538	CUP0993	CUP0994			FALSE	0.064	77.000	0.000	NA		NA
2325538	2325539	CUP0994	CUP0995			FALSE	0.030	167.000	0.000	NA		NA
2325539	2325540	CUP0995	CUP0996			TRUE	0.809	-3.000	0.000	NA		NA
2325541	2325542	CUP0997	CUP0998	aroC		TRUE	0.947	-3.000	0.030	1.000	N	NA
2325542	2325543	CUP0998	CUP0999		rnhA	TRUE	0.895	-21.000	0.032	1.000	N	NA
2325543	2325544	CUP0999	CUP1000	rnhA		TRUE	0.715	-127.000	0.009	1.000		NA
2325548	2325549	CUP1004	CUP1005			FALSE	0.054	88.000	0.000	NA		NA
2325549	2325550	CUP1005	CUP1006			TRUE	0.798	10.000	0.000	NA		NA
2325550	2325551	CUP1006	CUP1007			TRUE	0.997	0.000	0.564	0.052	Y	NA
2325551	2325552	CUP1007	CUP1008		trx	FALSE	0.039	106.000	0.000	1.000	N	NA
2325552	2325553	CUP1008	CUP1009	trx		FALSE	0.356	55.000	0.027	1.000	N	NA
2325553	2325554	CUP1009	CUP1010			TRUE	0.943	0.000	0.023	1.000		NA
2325555	2325556	CUP1467	CUP1468			TRUE	0.796	-10.000	0.000	NA		NA
2325556	2325557	CUP1468	CUP1469			TRUE	0.875	1.000	0.000	0.018		NA
2325557	2325558	CUP1469	CUP1470			TRUE	0.820	0.000	0.000	1.000		NA
2325558	2325559	CUP1470	CUP1471			FALSE	0.168	46.000	0.000	NA		NA
2325559	2325560	CUP1471	CUP1472		gltD	FALSE	0.027	207.000	0.000	NA		NA
2325561	2325562	CUP1473	CUP1474			TRUE	0.997	9.000	1.000	NA		NA
2325563	2325564	CUP1475	CUP1476	gltB		FALSE	0.055	87.000	0.000	NA		NA
2325564	2325565	CUP1476	CUP1477			TRUE	0.716	11.000	0.000	NA		NA
2325565	2325566	CUP1477	CUP1478		topA	TRUE	0.817	-3.000	0.000	1.000		NA
2325569	2325570	CUP1481	CUP1482		bacA	TRUE	0.517	-67.000	0.000	NA		NA
2325570	2325571	CUP1482	CUP1483	bacA	thrS	FALSE	0.394	58.000	0.063	1.000	N	NA
2325571	2325572	CUP1483	CUP1484	thrS	infC	TRUE	0.981	-3.000	0.060	1.000	Y	NA
2325572	2325573	CUP1484	CUP1485	infC		FALSE	0.207	40.000	0.000	NA		NA
2325573	2325574	CUP1485	CUP1486			FALSE	0.414	23.000	0.000	NA		NA
2325577	2325578	CUP1489	CUP1490			TRUE	0.995	-19.000	0.625	0.007	Y	NA
2325578	2325579	CUP1490	CUP1491			TRUE	0.809	-3.000	0.000	NA		NA
2325580	2325581	CUP1492	CUP1493	argC		TRUE	0.944	9.000	0.019	1.000		NA
2325581	2325582	CUP1493	CUP1494		argB	TRUE	0.919	9.000	0.006	1.000		NA
2325582	2325583	CUP1494	CUP1495	argB	argD	TRUE	0.978	1.000	0.030	1.000	Y	NA
2325583	2325584	CUP1495	CUP1496	argD		FALSE	0.028	187.000	0.000	NA		NA
2325586	2325587	CUP1498	CUP1499			TRUE	0.760	-13.000	0.000	NA		NA
2325589	2325590	CUP0923	CUP0924			TRUE	0.836	9.000	0.000	NA		NA
2325590	2325591	CUP0924	CUP0925			TRUE	0.716	11.000	0.000	NA		NA
2325591	2325592	CUP0925	CUP0926			FALSE	0.023	428.000	0.000	NA		NA
2325592	2325593	CUP0926	CUP0927			TRUE	0.809	-3.000	0.000	NA		NA
2325593	2325594	CUP0927	CUP0928			TRUE	0.844	4.000	0.000	NA		NA
2325594	2325595	CUP0928	CUP0929			FALSE	0.032	134.000	0.000	NA		NA
2325595	2325596	CUP0929	CUP0930			TRUE	0.833	3.000	0.000	NA		NA
2325596	2325597	CUP0930	CUP0931			FALSE	0.098	61.000	0.000	NA		NA
2325597	2325598	CUP0931	CUP0932			FALSE	0.025	284.000	0.000	NA		NA
2325598	2325599	CUP0932	CUP0933			FALSE	0.127	54.000	0.000	NA		NA
2325599	2325600	CUP0933	CUP0934			FALSE	0.092	62.000	0.000	NA		NA
2325600	2325601	CUP0934	CUP0935			FALSE	0.023	407.000	0.000	NA		NA
2325601	2325602	CUP0935	CUP0936			TRUE	0.812	0.000	0.000	NA		NA
2325602	2325603	CUP0936	CUP0937			FALSE	0.024	324.000	0.000	NA		NA
2325603	2325604	CUP0937	CUP0938			FALSE	0.034	125.000	0.000	NA		NA
2325604	2325605	CUP0938	CUP0939			FALSE	0.041	106.000	0.000	NA		NA
2325605	2325606	CUP0939	CUP0940			FALSE	0.024	321.000	0.000	NA		NA
2325606	2325607	CUP0940	CUP0941			FALSE	0.106	58.000	0.000	NA		NA
2325607	2325608	CUP0941	CUP0942			TRUE	0.715	-16.000	0.000	NA		NA
2325611	2325612	CUP0945	CUP0946			TRUE	0.914	-22.000	0.065	NA		NA
2325612	2325613	CUP0946	CUP0947			FALSE	0.057	84.000	0.000	NA		NA
2325613	2325614	CUP0947	CUP0948			TRUE	0.796	-10.000	0.000	NA		NA
2325614	2325615	CUP0948	CUP0949			TRUE	0.818	1.000	0.000	NA		NA
2325616	2325617	CUP0950	CUP0951			FALSE	0.200	41.000	0.000	NA		NA
2325617	2325618	CUP0951	CUP0952			FALSE	0.057	84.000	0.000	NA		NA
2325618	2325619	CUP0952	CUP0953			FALSE	0.076	69.000	0.000	NA		NA
2325619	2325620	CUP0953	CUP0954			FALSE	0.026	323.000	0.000	1.000		NA
2325621	2325622	CUP1442	CUP1443			FALSE	0.092	62.000	0.000	NA		NA
2325622	2325623	CUP1443	CUP1444			TRUE	0.812	0.000	0.000	NA		NA
2325624	2325625	CUP1445	CUP1446			TRUE	0.818	1.000	0.000	NA		NA
2325626	2325627	CUP1447	CUP1448			FALSE	0.191	42.000	0.000	NA		NA
2325627	2325628	CUP1448	CUP1449			FALSE	0.030	179.000	0.000	1.000		NA
2325628	2325629	CUP1449	CUP1450			FALSE	0.026	239.000	0.000	NA		NA
2325629	2325630	CUP1450	CUP1451			TRUE	0.836	9.000	0.000	NA		NA
2325630	2325631	CUP1451	CUP1452			FALSE	0.029	172.000	0.000	NA		NA
2325631	2325632	CUP1452	CUP1453			FALSE	0.044	172.000	0.000	0.022		NA
2325632	2325633	CUP1453	CUP1454			TRUE	0.543	22.000	0.000	0.022		NA
2325636	2325637	CUP1457	CUP1458			FALSE	0.033	131.000	0.000	NA		NA
2325637	2325638	CUP1458	CUP1459		obg	TRUE	0.716	11.000	0.000	NA		NA
2325638	2325639	CUP1459	CUP1460	obg		TRUE	0.818	-9.000	0.000	1.000		NA
2325639	2325640	CUP1460	CUP1461		gyrB	FALSE	0.164	66.000	0.006	1.000		NA
2325640	2325641	CUP1461	CUP1462	gyrB	dnaN	TRUE	0.985	10.000	0.114	1.000	Y	NA
2325641	2325642	CUP1462	CUP1463	dnaN		FALSE	0.382	24.000	0.000	NA		NA
2325642	2325643	CUP1463	CUP1464		dnaA	TRUE	0.650	12.000	0.000	NA		NA
2325646	2325647	CUP0225	CUP0224			FALSE	0.024	328.000	0.000	NA		NA
2325647	2325648	CUP0224	CUP0223			TRUE	0.983	-3.000	0.222	1.000		NA
2325648	2325649	CUP0223	CUP0222			TRUE	0.996	-10.000	0.750	0.012		NA
2325649	2325650	CUP0222	CUP0221		sdhB	TRUE	0.599	31.000	0.022	1.000		NA
2325650	2325651	CUP0221	CUP0220	sdhB		TRUE	0.993	-7.000	0.153	0.002	Y	NA
2325651	2325652	CUP0220	CUP0219			TRUE	0.984	-16.000	0.128	0.002	Y	NA
2325652	2325653	CUP0219	CUP0218		lgt	FALSE	0.321	46.000	0.010	1.000	N	NA
2325655	2325656	CUP0216	CUP0215	pyk		TRUE	0.895	-31.000	0.073	1.000		NA
2325656	2325657	CUP0215	CUP0214			FALSE	0.081	114.000	0.007	1.000		NA
2325657	2325658	CUP0214	CUP0213			TRUE	0.915	-13.000	0.021	NA		NA
2325658	2325659	CUP0213	CUP0212			TRUE	0.846	8.000	0.000	NA		NA
2325660	2325661	CUPA0001	CUPA0002			TRUE	0.846	8.000	0.000	NA		NA
2325662	2325663	CUPA0003	CUPA0004			FALSE	0.022	674.000	0.000	NA		NA
2325664	2325665	CUPA0005	CUPA0006			FALSE	0.024	343.000	0.000	NA		NA
2325665	2325666	CUPA0006	CUPA0007			FALSE	0.025	243.000	0.000	NA		NA
2325666	2325667	CUPA0007	CUPA0008			FALSE	0.025	253.000	0.000	NA		NA
2325667	2325668	CUPA0008	CUPA0009			FALSE	0.044	102.000	0.000	NA		NA
2325668	2325669	CUPA0009	CUPA0010			FALSE	0.037	114.000	0.000	NA		NA
2325669	2325670	CUPA0010	CUPA0011			FALSE	0.043	103.000	0.000	NA		NA
2325670	2325671	CUPA0011	CUPA0012			TRUE	0.809	-3.000	0.000	NA		NA
2325671	2325672	CUPA0012	CUPA0013			TRUE	0.809	-3.000	0.000	NA		NA
2325672	2325673	CUPA0013	CUPA0014			FALSE	0.028	185.000	0.000	NA		NA
2325673	2325674	CUPA0014	CUPA0015			TRUE	0.818	1.000	0.000	NA		NA
2325674	2325675	CUPA0015	CUPA0016			TRUE	0.820	2.000	0.000	NA		NA
2325675	2325676	CUPA0016	CUPA0017			TRUE	0.716	11.000	0.000	NA		NA
2325676	2325677	CUPA0017	CUPA0018			TRUE	0.650	12.000	0.000	NA		NA
2325677	2325678	CUPA0018	CUPA0019			FALSE	0.191	42.000	0.000	NA		NA
2325678	2325679	CUPA0019	CUPA0020			TRUE	0.826	-7.000	0.000	NA		NA
2325679	2325680	CUPA0020	CUPA0021			FALSE	0.054	88.000	0.000	NA		NA
2325680	2325681	CUPA0021	CUPA0022			FALSE	0.049	92.000	0.000	NA		NA
2325681	2325682	CUPA0022	CUPA0023			FALSE	0.030	168.000	0.000	NA		NA
2325682	2325683	CUPA0023	CUPA0024			TRUE	0.826	-7.000	0.000	NA		NA
2325683	2325684	CUPA0024	CUPA0025			FALSE	0.034	126.000	0.000	NA		NA
2325684	2325685	CUPA0025	CUPA0026			FALSE	0.029	173.000	0.000	NA		NA
2325686	2325687	CUP0956	CUP0957			FALSE	0.030	165.000	0.000	NA		NA
2325688	2325689	CUPB0001	CUPB0002			FALSE	0.038	113.000	0.000	NA		NA
2325689	2325690	CUPB0002	CUPB0003			TRUE	0.820	2.000	0.000	NA		NA
2325690	2325691	CUPB0003	CUPB0004			TRUE	0.812	0.000	0.000	NA		NA
2325691	2325692	CUPB0004	CUPB0005			TRUE	0.969	-52.000	0.500	NA		NA