MicrobesOnline Operon Predictions for Colwellia psychrerythraea 34H

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 837809 837810 CPS_0001 CPS_0002 dnaA dnaN TRUE 0.982 39.000 0.328 1.000 Y NA
 837810 837811 CPS_0002 CPS_0003 dnaN recF TRUE 0.983 36.000 0.318 1.000 Y NA
 837811 837812 CPS_0003 CPS_0004 recF gyrB TRUE 0.995 10.000 0.249 0.005 Y NA
 837812 837813 CPS_0004 CPS_0005 gyrB glyQ FALSE 0.190 166.000 0.004 1.000 N NA
 837813 837814 CPS_0005 CPS_0006 glyQ glyS TRUE 0.999 0.000 0.651 0.001 Y NA
 837814 837815 CPS_0006 CPS_0007 glyS   FALSE 0.021 460.000 0.000 1.000   NA
 837815 837816 CPS_0007 CPS_0008     TRUE 0.733 33.000 0.043 NA   NA
 837817 837818 CPS_0009 CPS_0010 lepB1 sirA FALSE 0.266 98.000 0.000 1.000 N NA
 837821 837822 CPS_0013 CPS_0014 pepQ   TRUE 0.526 186.000 0.127 1.000   NA
 837822 837823 CPS_0014 CPS_0015   trkH TRUE 0.953 25.000 0.202 1.000   NA
 837824 837825 CPS_0016 CPS_0017   trkA FALSE 0.041 363.000 0.000 1.000   NA
 837825 837826 CPS_0017 CPS_0018 trkA sun TRUE 0.905 30.000 0.122 1.000 N NA
 837826 837827 CPS_0018 CPS_0019 sun fmt TRUE 0.996 9.000 0.305 1.000 Y NA
 837827 837828 CPS_0019 CPS_0020 fmt def1 TRUE 0.944 33.000 0.105 0.022 Y NA
 837829 837830 CPS_0021 CPS_0022     TRUE 0.477 84.000 0.048 1.000   NA
 837830 837831 CPS_0022 CPS_0023   smg TRUE 0.929 20.000 0.124 NA   NA
 837831 837832 CPS_0023 CPS_0024 smg   TRUE 0.822 120.000 0.331 NA   NA
 837833 837834 CPS_0025 CPS_0026 purK purE TRUE 0.990 9.000 0.136 0.001 Y NA
 837837 837838 CPS_0029 CPS_0030   aroE FALSE 0.206 124.000 0.000 1.000 N NA
 837838 837839 CPS_0030 CPS_0031 aroE   TRUE 0.918 15.000 0.078 NA   NA
 837840 837841 CPS_0032 CPS_0033     FALSE 0.010 680.000 0.000 NA   NA
 837842 837843 CPS_0034 CPS_0035 rrsA   FALSE 0.199 98.000 0.000 NA   NA
 837843 837844 CPS_0035 CPS_0036     FALSE 0.160 113.000 0.000 NA   NA
 837844 837845 CPS_0036 CPS_0037   rrlA FALSE 0.102 249.000 0.000 NA   NA
 837845 837846 CPS_0037 CPS_0038 rrlA rrfA FALSE 0.143 160.000 0.000 NA   NA
 837846 837847 CPS_0038 CPS_0039 rrfA   FALSE 0.172 106.000 0.000 NA   NA
 837847 837848 CPS_0039 CPS_0040     FALSE 0.146 138.000 0.000 NA   NA
 837850 837851 CPS_0042 CPS_0043   rrsB FALSE 0.010 698.000 0.000 NA   NA
 837851 837852 CPS_0043 CPS_0044 rrsB   FALSE 0.188 101.000 0.000 NA   NA
 837852 837853 CPS_0044 CPS_0045     FALSE 0.205 96.000 0.000 NA   NA
 837853 837854 CPS_0045 CPS_0046   rrlB FALSE 0.146 138.000 0.000 NA   NA
 837856 837857 CPS_0048 CPS_0049 rrfB rrsC FALSE 0.016 539.000 0.000 NA   NA
 837857 837858 CPS_0049 CPS_0050 rrsC   FALSE 0.188 101.000 0.000 NA   NA
 837858 837859 CPS_0050 CPS_0051     FALSE 0.205 96.000 0.000 NA   NA
 837859 837860 CPS_0051 CPS_0052   rrlC FALSE 0.102 249.000 0.000 NA   NA
 837862 837863 CPS_0054 CPS_0055 5S rRNA atpI FALSE 0.009 885.000 0.000 NA   NA
 837863 837864 CPS_0055 CPS_0056 atpI atpB TRUE 0.975 44.000 0.291 1.000 Y NA
 837864 837865 CPS_0056 CPS_0057 atpB atpE TRUE 0.970 99.000 0.557 0.003 Y NA
 837865 837866 CPS_0057 CPS_0058 atpE atpF TRUE 0.992 48.000 0.666 0.003 Y NA
 837866 837867 CPS_0058 CPS_0059 atpF atpH TRUE 0.992 13.000 0.242 0.003 Y NA
 837867 837868 CPS_0059 CPS_0060 atpH atpA TRUE 0.999 16.000 0.864 0.003 Y NA
 837868 837869 CPS_0060 CPS_0061 atpA atpG TRUE 0.997 38.000 0.846 0.003 Y NA
 837869 837870 CPS_0061 CPS_0062 atpG atpD TRUE 0.981 101.000 0.724 0.003 Y NA
 837870 837871 CPS_0062 CPS_0063 atpD atpC TRUE 0.994 62.000 0.837 0.003 Y NA
 837872 837873 CPS_0064 CPS_0065     TRUE 0.891 5.000 0.000 NA N NA
 837873 837874 CPS_0065 CPS_0066     TRUE 0.986 0.000 0.186 NA   NA
 837874 837875 CPS_0066 CPS_0067     TRUE 0.830 63.000 0.171 NA   NA
 837876 837877 CPS_0068 CPS_0069     FALSE 0.047 350.000 0.000 NA   NA
 837877 837878 CPS_0069 CPS_0070     FALSE 0.411 49.000 0.000 NA   NA
 837879 837880 CPS_0071 CPS_0072 hemY hemX TRUE 0.999 -3.000 0.765 1.000 Y NA
 837880 837881 CPS_0072 CPS_0073 hemX hemD TRUE 0.996 24.000 0.600 1.000 Y NA
 837881 837882 CPS_0073 CPS_0074 hemD hemC TRUE 0.938 65.000 0.205 0.002 Y NA
 837882 837883 CPS_0074 CPS_0075 hemC cyaY TRUE 0.699 25.000 0.003 NA N NA
 837884 837885 CPS_0076 CPS_0077   dapF TRUE 0.867 0.000 0.000 NA   NA
 837885 837886 CPS_0077 CPS_0078 dapF   TRUE 0.840 61.000 0.175 NA   NA
 837886 837887 CPS_0078 CPS_0079     TRUE 0.705 25.000 0.018 NA   NA
 837887 837888 CPS_0079 CPS_0080   uvrD TRUE 0.541 160.000 0.128 1.000   NA
 837888 837889 CPS_0080 CPS_0081 uvrD   TRUE 0.430 93.000 0.033 1.000 N NA
 837891 837892 CPS_0083 CPS_0084 recQ   FALSE 0.073 292.000 0.000 NA   NA
 837893 837894 CPS_0085 CPS_0086     FALSE 0.143 157.000 0.000 NA   NA
 837894 837895 CPS_0086 CPS_0087     FALSE 0.135 198.000 0.000 NA   NA
 837895 837896 CPS_0087 CPS_0088     FALSE 0.140 182.000 0.000 NA   NA
 837896 837897 CPS_0088 CPS_0089     TRUE 0.838 56.000 0.161 NA   NA
 837897 837898 CPS_0089 CPS_0090     TRUE 0.776 65.000 0.129 NA   NA
 837900 837901 CPS_0092 CPS_0093     TRUE 0.929 -13.000 0.071 1.000   NA
 837901 837902 CPS_0093 CPS_0094     FALSE 0.071 295.000 0.000 NA   NA
 837902 837903 CPS_0094 CPS_0095     FALSE 0.194 372.000 0.000 NA Y NA
 837903 837904 CPS_0095 CPS_0096     TRUE 0.427 57.000 0.000 0.040 N NA
 837904 837905 CPS_0096 CPS_0097     FALSE 0.357 58.000 0.000 NA   NA
 837905 837906 CPS_0097 CPS_0098   mmsA1 FALSE 0.184 102.000 0.000 NA   NA
 837906 837907 CPS_0098 CPS_0099 mmsA1   TRUE 0.764 43.000 0.059 1.000 N NA
 837908 837909 CPS_0100 CPS_0101     TRUE 0.594 27.000 0.000 NA   NA
 837912 837913 CPS_0104 CPS_0105     FALSE 0.399 51.000 0.000 NA   NA
 837913 837914 CPS_0105 CPS_0106     FALSE 0.155 119.000 0.000 NA   NA
 837914 837915 CPS_0106 CPS_0107     FALSE 0.145 149.000 0.000 NA   NA
 837915 837916 CPS_0107 CPS_0108     FALSE 0.160 113.000 0.000 NA   NA
 837916 837917 CPS_0108 CPS_0109     FALSE 0.047 351.000 0.000 NA   NA
 837917 837918 CPS_0109 CPS_0110     TRUE 0.997 -3.000 0.600 NA   NA
 837918 837919 CPS_0110 CPS_0111     FALSE 0.388 53.000 0.000 NA   NA
 837920 837921 CPS_0112 CPS_0113 rph pyrE TRUE 0.899 29.000 0.108 1.000 N NA
 837921 837922 CPS_0113 CPS_0114 pyrE   FALSE 0.020 581.000 0.000 NA N NA
 837922 837923 CPS_0114 CPS_0115     FALSE 0.175 105.000 0.000 NA   NA
 837924 837925 CPS_0116 CPS_0117   kdkA TRUE 0.857 3.000 0.000 NA   NA
 837925 837926 CPS_0117 CPS_0118 kdkA kdtA TRUE 0.895 -3.000 0.000 1.000 N NA
 837926 837927 CPS_0118 CPS_0119 kdtA   FALSE 0.252 101.000 0.000 1.000 N NA
 837928 837929 CPS_0120 CPS_0121 kbl tdh TRUE 0.987 32.000 0.547 1.000 N NA
 837929 837930 CPS_0121 CPS_0122 tdh glpE TRUE 0.488 158.000 0.089 1.000 N NA
 837930 837931 CPS_0122 CPS_0123 glpE   TRUE 0.976 31.000 0.405 1.000   NA
 837933 837934 CPS_0125 CPS_0126   ubiA TRUE 0.974 38.000 0.248 NA Y NA
 837935 837936 CPS_0127 CPS_0128     TRUE 0.698 59.000 0.080 NA   NA
 837937 837938 CPS_0129 CPS_0130     TRUE 0.611 129.000 0.038 NA Y NA
 837938 837939 CPS_0130 CPS_0131     TRUE 1.000 0.000 0.827 NA Y NA
 837940 837941 CPS_0132 CPS_0133   plsB FALSE 0.039 374.000 0.000 NA   NA
 837943 837944 CPS_0135 CPS_0136     FALSE 0.143 160.000 0.000 NA   NA
 837944 837945 CPS_0136 CPS_0137     FALSE 0.373 55.000 0.000 NA   NA
 837946 837947 CPS_0138 CPS_0139     FALSE 0.193 104.000 0.009 NA   NA
 837947 837948 CPS_0139 CPS_0140     TRUE 0.733 -34.000 0.000 NA   NA
 837948 837949 CPS_0140 CPS_0141     TRUE 0.722 -58.000 0.000 NA   NA
 837949 837950 CPS_0141 CPS_0142   ftnA FALSE 0.164 215.000 0.000 0.039 N NA
 837951 837952 CPS_0143 CPS_0144     TRUE 0.835 6.000 0.000 1.000   NA
 837953 837954 CPS_0145 CPS_0146     FALSE 0.157 117.000 0.000 NA   NA
 837955 837956 CPS_0147 CPS_0148     FALSE 0.014 555.000 0.000 1.000   NA
 837956 837957 CPS_0148 CPS_0149     FALSE 0.377 53.000 0.000 1.000   NA
 837957 837958 CPS_0149 CPS_0150     FALSE 0.219 92.000 0.000 NA   NA
 837959 837960 CPS_0151 CPS_0152     FALSE 0.143 163.000 0.000 NA   NA
 837960 837961 CPS_0152 CPS_0153     FALSE 0.040 372.000 0.000 NA   NA
 837961 837962 CPS_0153 CPS_0154     FALSE 0.268 79.000 0.000 NA   NA
 837963 837964 CPS_0155 CPS_0156     TRUE 0.860 33.000 0.000 1.000 Y NA
 837967 837968 CPS_0159 CPS_0160 ftsE   TRUE 0.984 -16.000 0.121 NA Y NA
 837968 837969 CPS_0160 CPS_0161   rpoH FALSE 0.177 335.000 0.051 NA N NA
 837969 837970 CPS_0161 CPS_0162 rpoH   FALSE 0.130 262.000 0.000 1.000 N NA
 837970 837971 CPS_0162 CPS_0163   tatA1 FALSE 0.127 264.000 0.000 1.000 N NA
 837971 837972 CPS_0163 CPS_0164 tatA1 tatB1 TRUE 0.968 4.000 0.000 0.009 Y NA
 837972 837973 CPS_0164 CPS_0165 tatB1 tatC1 TRUE 0.997 -3.000 0.333 NA Y NA
 837973 837974 CPS_0165 CPS_0166 tatC1   TRUE 0.910 -3.000 0.025 NA   NA
 837974 837975 CPS_0166 CPS_0167   tatD TRUE 0.786 28.000 0.045 NA   NA
 837975 837976 CPS_0167 CPS_0168 tatD   TRUE 0.779 76.000 0.134 NA N NA
 837976 837977 CPS_0168 CPS_0169   hemB TRUE 0.909 13.000 0.038 1.000 N NA
 837979 837980 CPS_0171 CPS_0172     TRUE 0.800 -10.000 0.000 NA   NA
 837981 837982 CPS_0173 CPS_0174   rhlB TRUE 0.980 31.000 0.406 NA N NA
 837983 837984 CPS_0175 CPS_0176 trx1 rho FALSE 0.354 241.000 0.087 1.000   NA
 837984 837985 CPS_0176 CPS_0177 rho ubiD TRUE 0.470 78.000 0.025 NA N NA
 837985 837986 CPS_0177 CPS_0178 ubiD   TRUE 0.596 209.000 0.045 NA Y NA
 837987 837988 CPS_0179 CPS_0180   pepD FALSE 0.019 573.000 0.000 1.000 N NA
 837988 837989 CPS_0180 CPS_0181 pepD   FALSE 0.031 464.000 0.000 1.000 N NA
 837989 837990 CPS_0181 CPS_0182   coaBC FALSE 0.411 79.000 0.016 1.000 N NA
 837991 837992 CPS_0183 CPS_0184     FALSE 0.154 114.000 0.000 1.000   NA
 837992 837993 CPS_0184 CPS_0185     TRUE 0.997 16.000 0.864 0.007   NA
 837993 837994 CPS_0185 CPS_0186     TRUE 0.998 -7.000 0.727 NA   NA
 837994 837995 CPS_0186 CPS_0187     TRUE 0.829 -7.000 0.000 NA   NA
 837995 837996 CPS_0187 CPS_0188     TRUE 0.867 0.000 0.000 NA   NA
 837996 837997 CPS_0188 CPS_0189     FALSE 0.230 89.000 0.000 NA   NA
 837998 837999 CPS_0190 CPS_0191     FALSE 0.008 1805.000 0.000 NA   NA
 837999 838000 CPS_0191 CPS_0192     FALSE 0.379 54.000 0.000 NA   NA
 838000 838001 CPS_0192 CPS_0193     TRUE 0.698 -112.000 0.000 NA   NA
 838001 838002 CPS_0193 CPS_0194     FALSE 0.147 131.000 0.000 NA   NA
 838002 838003 CPS_0194 CPS_0195     FALSE 0.020 479.000 0.000 NA   NA
 838003 838004 CPS_0195 CPS_0196     FALSE 0.133 207.000 0.000 NA   NA
 838004 838005 CPS_0196 CPS_0197     FALSE 0.080 281.000 0.000 NA   NA
 838005 838006 CPS_0197 CPS_0198     TRUE 0.416 48.000 0.000 NA   NA
 838010 838011 CPS_0202 CPS_0203     TRUE 0.489 36.000 0.000 NA   NA
 838012 10784578 CPS_0204 CPS_0205     FALSE 0.134 202.000 0.000 NA   NA
 10784578 838013 CPS_0205 CPS_0206     FALSE 0.209 95.000 0.000 NA   NA
 838013 838014 CPS_0206 CPS_0207     FALSE 0.398 107.000 0.057 NA   NA
 838014 838015 CPS_0207 CPS_0208     TRUE 0.997 -13.000 0.667 1.000   NA
 838015 838016 CPS_0208 CPS_0209   rpmB FALSE 0.091 260.000 0.000 1.000   NA
 838016 838017 CPS_0209 CPS_0210 rpmB rpmG TRUE 0.990 25.000 0.332 0.014 Y NA
 838017 838018 CPS_0210 CPS_0211 rpmG   FALSE 0.135 158.000 0.003 NA   NA
 838018 838019 CPS_0211 CPS_0212   mutM TRUE 0.440 51.000 0.010 NA   NA
 838022 838023 CPS_0215 CPS_0216     TRUE 0.850 26.000 0.069 NA   NA
 838023 838024 CPS_0216 CPS_0217   bioH FALSE 0.190 106.000 0.010 1.000   NA
 838027 838028 CPS_0220 CPS_0221     TRUE 0.818 13.000 0.015 NA   NA
 838028 838029 CPS_0221 CPS_0222     TRUE 0.865 1.000 0.000 NA   NA
 838029 838030 CPS_0222 CPS_0223     FALSE 0.159 115.000 0.000 NA   NA
 838030 838031 CPS_0223 CPS_0224     TRUE 0.620 25.000 0.000 NA   NA
 838031 838032 CPS_0224 CPS_0225     FALSE 0.303 71.000 0.000 NA   NA
 838035 838036 CPS_0228 CPS_0229   cyoE TRUE 0.659 79.000 0.099 1.000   NA
 838036 838037 CPS_0229 CPS_0230 cyoE   TRUE 0.997 -7.000 0.321 1.000 Y NA
 838037 838038 CPS_0230 CPS_0231     TRUE 0.989 5.000 0.255 NA   NA
 838038 838039 CPS_0231 CPS_0232     TRUE 0.987 45.000 0.722 NA   NA
 838039 838040 CPS_0232 CPS_0233     TRUE 0.912 11.000 0.041 NA   NA
 838040 838041 CPS_0233 CPS_0234   ctaG TRUE 0.989 28.000 0.536 1.000 N NA
 838041 838042 CPS_0234 CPS_0235 ctaG   TRUE 0.991 6.000 0.268 1.000 N NA
 838042 838043 CPS_0235 CPS_0236     TRUE 0.999 12.000 0.741 0.003 Y NA
 838043 838044 CPS_0236 CPS_0237   lexA FALSE 0.020 566.000 0.000 1.000 N NA
 838045 838046 CPS_0238 CPS_0239     TRUE 0.961 136.000 0.833 NA   NA
 838046 838047 CPS_0239 CPS_0240     TRUE 0.985 66.000 0.833 NA   NA
 838047 838048 CPS_0240 CPS_0241     TRUE 0.994 10.000 0.429 NA   NA
 838050 838051 CPS_0243 CPS_0244     TRUE 0.999 0.000 0.714 NA N NA
 838051 838052 CPS_0244 CPS_0245     FALSE 0.268 190.000 0.025 NA N NA
 838052 838053 CPS_0245 CPS_0246     TRUE 0.466 39.000 0.000 NA   NA
 838053 838054 CPS_0246 CPS_0247   glk1 FALSE 0.256 82.000 0.000 NA   NA
 838055 838056 CPS_0248 CPS_0249     TRUE 0.831 9.000 0.000 NA   NA
 838057 838058 CPS_0250 CPS_0251 thiC   TRUE 0.882 17.000 0.044 1.000 N NA
 838058 838059 CPS_0251 CPS_0252   thiS TRUE 0.995 0.000 0.342 1.000 N NA
 838059 838060 CPS_0252 CPS_0253 thiS thiG TRUE 0.987 0.000 0.064 1.000 Y NA
 838060 838061 CPS_0253 CPS_0254 thiG thiDE FALSE 0.301 301.000 0.012 0.005 Y NA
 838061 838062 CPS_0254 CPS_0255 thiDE   FALSE 0.400 68.000 0.000 1.000 N NA
 838066 838067 CPS_0259 CPS_0260     FALSE 0.148 130.000 0.000 NA   NA
 838069 838070 CPS_0262 CPS_0263     TRUE 0.867 0.000 0.000 NA   NA
 838070 838071 CPS_0263 CPS_0264     TRUE 0.967 0.000 0.083 NA   NA
 838071 838072 CPS_0264 CPS_0265     FALSE 0.168 108.000 0.000 NA   NA
 838073 838074 CPS_0266 CPS_0267     FALSE 0.394 50.000 0.000 1.000   NA
 838074 838075 CPS_0267 CPS_0268     FALSE 0.158 110.000 0.000 1.000   NA
 838076 838077 CPS_0269 CPS_0270     TRUE 0.835 8.000 0.000 NA   NA
 838077 838078 CPS_0270 CPS_0271     FALSE 0.155 120.000 0.000 NA   NA
 838079 838080 CPS_0272 CPS_0273     TRUE 0.492 125.000 0.000 0.063 Y NA
 838080 838081 CPS_0273 CPS_0274     TRUE 0.655 183.000 0.175 1.000 N NA
 838083 838084 CPS_0276 CPS_0277   iorB FALSE 0.042 421.000 0.000 NA N NA
 838084 838085 CPS_0277 CPS_0278 iorB iorA TRUE 0.998 3.000 0.400 0.001 Y NA
 838085 838086 CPS_0278 CPS_0279 iorA   FALSE 0.285 74.000 0.000 1.000   NA
 838086 838087 CPS_0279 CPS_0280     TRUE 0.800 -10.000 0.000 NA   NA
 838087 838088 CPS_0280 CPS_0281     FALSE 0.178 104.000 0.000 NA   NA
 838088 838089 CPS_0281 CPS_0282     TRUE 0.857 3.000 0.000 NA   NA
 838089 838090 CPS_0282 CPS_0283     FALSE 0.160 113.000 0.000 NA   NA
 838092 838093 CPS_0285 CPS_0286     FALSE 0.017 500.000 0.000 1.000   NA
 838095 838096 CPS_0288 CPS_0289     TRUE 0.997 10.000 0.538 NA N NA
 838096 838097 CPS_0289 CPS_0290     TRUE 0.651 105.000 0.136 1.000 N NA
 838097 838098 CPS_0290 CPS_0291     FALSE 0.140 150.000 0.000 1.000   NA
 838098 838099 CPS_0291 CPS_0292     FALSE 0.405 48.000 0.000 1.000   NA
 838099 838100 CPS_0292 CPS_0293     FALSE 0.139 184.000 0.000 NA   NA
 838101 838102 CPS_0294 CPS_0295 ubiE   TRUE 0.979 3.000 0.145 1.000   NA
 838102 838103 CPS_0295 CPS_0296   ubiB TRUE 0.945 69.000 0.432 1.000   NA
 838104 838105 CPS_0297 CPS_0298     FALSE 0.178 104.000 0.000 NA   NA
 838108 838109 CPS_0301 CPS_0302   manB FALSE 0.252 81.000 0.000 1.000   NA
 838111 838112 CPS_0304 CPS_0305     TRUE 0.867 0.000 0.000 NA   NA
 838112 838113 CPS_0305 CPS_0306     TRUE 0.732 -39.000 0.000 NA   NA
 838113 838114 CPS_0306 CPS_0307     TRUE 0.702 -99.000 0.000 NA   NA
 838114 838115 CPS_0307 CPS_0308     FALSE 0.157 117.000 0.000 NA   NA
 838115 838116 CPS_0308 CPS_0309     FALSE 0.240 84.000 0.000 1.000   NA
 838116 838117 CPS_0309 CPS_0310     FALSE 0.202 88.000 0.000 0.019   NA
 838121 838122 CPS_0314 CPS_0315     TRUE 0.867 0.000 0.000 NA   NA
 838122 838123 CPS_0315 CPS_0316     FALSE 0.146 146.000 0.000 NA   NA
 838123 838124 CPS_0316 CPS_0317     FALSE 0.405 50.000 0.000 NA   NA
 838124 838125 CPS_0317 CPS_0318     FALSE 0.112 238.000 0.000 NA   NA
 838127 838128 CPS_0320 CPS_0321     TRUE 0.846 39.000 0.118 NA   NA
 838128 838129 CPS_0321 CPS_0322   amiB TRUE 0.926 18.000 0.109 NA   NA
 838129 838130 CPS_0322 CPS_0323 amiB mutL TRUE 0.968 7.000 0.092 1.000 N NA
 838130 838131 CPS_0323 CPS_0324 mutL miaA TRUE 0.950 27.000 0.188 1.000 N NA
 838131 838132 CPS_0324 CPS_0325 miaA hfq TRUE 0.899 168.000 0.531 1.000   NA
 838132 838133 CPS_0325 CPS_0326 hfq hflX TRUE 0.826 53.000 0.141 1.000   NA
 838133 838134 CPS_0326 CPS_0327 hflX hflK TRUE 0.839 64.000 0.184 1.000   NA
 838134 838135 CPS_0327 CPS_0328 hflK hflC TRUE 1.000 4.000 0.947 0.011 Y NA
 838135 838136 CPS_0328 CPS_0329 hflC   FALSE 0.124 222.000 0.000 NA   NA
 838136 838137 CPS_0329 CPS_0330   purA FALSE 0.147 139.000 0.000 NA   NA
 838137 838138 CPS_0330 CPS_0331 purA   FALSE 0.013 831.000 0.000 1.000 N NA
 838138 838139 CPS_0331 CPS_0332     FALSE 0.147 131.000 0.000 NA   NA
 838140 838141 CPS_0333 CPS_0334   sthA FALSE 0.243 85.000 0.000 NA   NA
 838143 838144 CPS_0336 CPS_0337 trmA   FALSE 0.143 171.000 0.000 NA   NA
 838144 838145 CPS_0337 CPS_0338     FALSE 0.168 108.000 0.000 NA   NA
 838146 838147 CPS_0339 CPS_0340 rrsD   FALSE 0.188 101.000 0.000 NA   NA
 838147 838148 CPS_0340 CPS_0341     FALSE 0.205 96.000 0.000 NA   NA
 838148 838149 CPS_0341 CPS_0342   rrlD FALSE 0.146 138.000 0.000 NA   NA
 838151 838152 CPS_0344 CPS_0345 rrfD rrsE FALSE 0.016 546.000 0.000 NA   NA
 838152 838153 CPS_0345 CPS_0346 rrsE   FALSE 0.188 101.000 0.000 NA   NA
 838153 838154 CPS_0346 CPS_0347     FALSE 0.205 96.000 0.000 NA   NA
 838154 838155 CPS_0347 CPS_0348   rrlE FALSE 0.146 138.000 0.000 NA   NA
 838157 838158 CPS_0350 CPS_0351 rrfE   FALSE 0.058 326.000 0.000 NA   NA
 838159 838160 CPS_0352 CPS_0353     FALSE 0.059 320.000 0.000 NA   NA
 838162 838163 CPS_0355 CPS_0356     FALSE 0.035 391.000 0.000 NA   NA
 838163 838164 CPS_0356 CPS_0357     TRUE 0.581 28.000 0.000 NA   NA
 838164 838165 CPS_0357 CPS_0358     TRUE 0.720 -61.000 0.000 NA   NA
 838166 838167 CPS_0359 CPS_0360     TRUE 0.800 -10.000 0.000 NA   NA
 838168 838169 CPS_0361 CPS_0362     FALSE 0.227 90.000 0.000 NA   NA
 838169 838170 CPS_0362 CPS_0363     TRUE 0.854 -3.000 0.000 NA   NA
 838170 838171 CPS_0363 CPS_0364     TRUE 0.973 121.000 1.000 NA   NA
 838171 838172 CPS_0364 CPS_0365     TRUE 0.709 16.000 0.000 NA   NA
 838172 838173 CPS_0365 CPS_0366     TRUE 0.838 7.000 0.000 NA   NA
 838173 838174 CPS_0366 CPS_0367     TRUE 0.607 26.000 0.000 NA   NA
 838174 838175 CPS_0367 CPS_0368     TRUE 0.800 -10.000 0.000 NA   NA
 838175 838176 CPS_0368 CPS_0369     TRUE 0.750 -24.000 0.000 NA   NA
 838177 838178 CPS_0370 CPS_0371     FALSE 0.233 88.000 0.000 NA   NA
 838179 838180 CPS_0372 CPS_0373     FALSE 0.168 108.000 0.000 NA   NA
 838180 838181 CPS_0373 CPS_0374     TRUE 0.518 33.000 0.000 NA   NA
 838184 838185 CPS_0377 CPS_0378     FALSE 0.022 461.000 0.000 NA   NA
 838186 838187 CPS_0379 CPS_0380     FALSE 0.014 556.000 0.000 1.000   NA
 838187 838188 CPS_0380 CPS_0381     FALSE 0.230 89.000 0.000 NA   NA
 838188 838189 CPS_0381 CPS_0382     FALSE 0.142 174.000 0.000 NA   NA
 838189 838190 CPS_0382 CPS_0383     FALSE 0.014 559.000 0.000 NA   NA
 838193 838194 CPS_0386 CPS_0387     FALSE 0.143 159.000 0.000 NA   NA
 838194 838195 CPS_0387 CPS_0388     TRUE 0.877 9.000 0.000 1.000 N NA
 838195 838196 CPS_0388 CPS_0389     FALSE 0.210 120.000 0.000 1.000 N NA
 838196 838197 CPS_0389 CPS_0390     FALSE 0.034 449.000 0.000 1.000 N NA
 838197 838198 CPS_0390 CPS_0391   ppaC FALSE 0.198 149.000 0.000 1.000 N NA
 838199 838200 CPS_0392 CPS_0393 fadA fadB TRUE 0.997 16.000 0.607 1.000 Y NA
 838200 838201 CPS_0393 CPS_0394 fadB   FALSE 0.021 556.000 0.000 1.000 N NA
 838202 838203 CPS_0395 CPS_0396     FALSE 0.143 169.000 0.000 NA   NA
 838204 838205 CPS_0397 CPS_0398 ntrC ntrB TRUE 0.999 -3.000 0.587 1.000 Y NA
 838205 838206 CPS_0398 CPS_0399 ntrB   TRUE 0.654 161.000 0.188 NA   NA
 838206 838207 CPS_0399 CPS_0400   glnA FALSE 0.233 247.000 0.044 NA   NA
 838208 838209 CPS_0401 CPS_0402     FALSE 0.138 187.000 0.000 NA   NA
 838209 838210 CPS_0402 CPS_0403     TRUE 0.694 58.000 0.077 NA   NA
 838212 838213 CPS_0405 CPS_0406 mpl   FALSE 0.119 227.000 0.000 NA   NA
 838213 838214 CPS_0406 CPS_0407   def2 TRUE 0.845 5.000 0.000 NA   NA
 838214 838215 CPS_0407 CPS_0408 def2 ubiX FALSE 0.404 67.000 0.000 1.000 N NA
 838216 838217 CPS_0409 CPS_0410     FALSE 0.296 125.000 0.038 NA   NA
 838217 838218 CPS_0410 CPS_0411     TRUE 0.958 0.000 0.067 NA   NA
 838218 838219 CPS_0411 CPS_0412   zur FALSE 0.161 175.000 0.011 1.000   NA
 838220 838221 CPS_0413 CPS_0414     FALSE 0.147 142.000 0.000 NA   NA
 838221 838222 CPS_0414 CPS_0415   rpsF FALSE 0.136 193.000 0.000 NA   NA
 838222 838223 CPS_0415 CPS_0416 rpsF priB TRUE 0.975 8.000 0.122 1.000 N NA
 838223 838224 CPS_0416 CPS_0417 priB rpsR TRUE 0.837 54.000 0.128 1.000 N NA
 838224 838225 CPS_0417 CPS_0418 rpsR rplI TRUE 0.996 18.000 0.499 0.014 Y NA
 838226 838227 CPS_0419 CPS_0420     FALSE 0.164 107.000 0.000 1.000   NA
 838227 838228 CPS_0420 CPS_0421     TRUE 0.463 193.000 0.000 0.072 Y NA
 838231 838232 CPS_0424 CPS_0425 nudE cysQ TRUE 0.952 57.000 0.373 1.000 N NA
 838234 838235 CPS_0427 CPS_0428     TRUE 0.594 27.000 0.000 NA   NA
 838238 838239 CPS_0431 CPS_0432     FALSE 0.268 79.000 0.000 NA   NA
 838239 838240 CPS_0432 CPS_0433     FALSE 0.351 57.000 0.000 1.000   NA
 838242 838243 CPS_0435 CPS_0436     TRUE 0.844 -18.000 0.024 NA   NA
 838248 838249 CPS_0441 CPS_0442     FALSE 0.131 211.000 0.000 NA   NA
 838249 838250 CPS_0442 CPS_0443     TRUE 0.620 25.000 0.000 NA   NA
 838250 838251 CPS_0443 CPS_0444     TRUE 0.607 26.000 0.000 NA   NA
 838251 838252 CPS_0444 CPS_0445     TRUE 0.779 23.000 0.031 NA   NA
 838254 838255 CPS_0447 CPS_0448   hemE FALSE 0.038 377.000 0.000 NA   NA
 838255 838256 CPS_0448 CPS_0449 hemE   FALSE 0.014 764.000 0.000 1.000 N NA
 838256 838257 CPS_0449 CPS_0450     TRUE 0.997 3.000 0.500 1.000 N NA
 838257 838258 CPS_0450 CPS_0451     TRUE 0.998 0.000 0.667 NA   NA
 838262 838263 CPS_0455 CPS_0456 metB metL TRUE 0.973 75.000 0.428 1.000 Y NA
 838263 838264 CPS_0456 CPS_0457 metL   FALSE 0.134 203.000 0.000 NA   NA
 838264 838265 CPS_0457 CPS_0458     TRUE 0.453 41.000 0.000 NA   NA
 838267 838268 CPS_0460 CPS_0461 argC argB TRUE 0.861 74.000 0.097 0.003 Y NA
 838268 838269 CPS_0461 CPS_0462 argB argF TRUE 0.942 53.000 0.171 1.000 Y NA
 838269 838270 CPS_0462 CPS_0463 argF argG TRUE 0.576 118.000 0.025 1.000 Y NA
 838270 838271 CPS_0463 CPS_0464 argG argHA TRUE 0.996 3.000 0.278 1.000 Y NA
 838271 838272 CPS_0464 CPS_0465 argHA argA TRUE 0.817 43.000 0.004 1.000 Y NA
 838274 838275 CPS_0467 CPS_0468 pilM pilN TRUE 0.998 -12.000 0.616 NA Y NA
 838275 838276 CPS_0468 CPS_0469 pilN pilO TRUE 0.999 0.000 0.770 NA Y NA
 838276 838277 CPS_0469 CPS_0470 pilO pilP TRUE 0.999 -3.000 0.680 NA Y NA
 838277 838278 CPS_0470 CPS_0471 pilP   TRUE 0.999 12.000 0.668 NA Y NA
 838278 838279 CPS_0471 CPS_0472   aroK TRUE 0.769 241.000 0.319 1.000 N NA
 838279 838280 CPS_0472 CPS_0473 aroK aroB TRUE 0.970 36.000 0.208 1.000 Y NA
 838280 838281 CPS_0473 CPS_0474 aroB   FALSE 0.339 62.000 0.000 NA   NA
 838281 838282 CPS_0474 CPS_0475   dam FALSE 0.109 241.000 0.000 NA   NA
 838283 838284 CPS_0476 CPS_0477     TRUE 0.969 32.000 0.346 NA   NA
 838284 838285 CPS_0477 CPS_0478     FALSE 0.195 99.000 0.000 NA   NA
 838286 838287 CPS_0479 CPS_0480 rpe trpS TRUE 0.438 60.000 0.000 1.000 N NA
 838288 838289 CPS_0481 CPS_0482     TRUE 0.984 -9.000 0.200 NA N NA
 838290 838291 CPS_0483 CPS_0484     FALSE 0.193 180.000 0.000 1.000 N NA
 838291 838292 CPS_0484 CPS_0485     FALSE 0.383 248.000 0.000 0.014 Y NA
 838292 838293 CPS_0485 CPS_0486     TRUE 0.807 11.000 0.000 NA   NA
 838293 838294 CPS_0486 CPS_0487     TRUE 0.854 -3.000 0.000 NA   NA
 838296 838297 CPS_0489 CPS_0490     TRUE 0.838 7.000 0.000 NA   NA
 838297 838298 CPS_0490 CPS_0491     FALSE 0.148 129.000 0.000 NA   NA
 838298 838299 CPS_0491 CPS_0492     FALSE 0.096 258.000 0.000 NA   NA
 838299 838300 CPS_0492 CPS_0493     TRUE 0.729 15.000 0.000 NA   NA
 838300 838301 CPS_0493 CPS_0494     TRUE 0.849 -3.000 0.000 1.000   NA
 838303 838304 CPS_0496 CPS_0497     TRUE 0.867 0.000 0.000 NA   NA
 838304 838305 CPS_0497 CPS_0498     TRUE 0.807 11.000 0.000 NA   NA
 838306 838307 CPS_0499 CPS_0500     TRUE 0.996 0.000 0.429 NA   NA
 838307 838308 CPS_0500 CPS_0501     TRUE 0.424 46.000 0.000 NA   NA
 838308 838309 CPS_0501 CPS_0502     FALSE 0.143 172.000 0.000 NA   NA
 838309 838310 CPS_0502 CPS_0503     TRUE 0.769 13.000 0.000 NA   NA
 838311 838312 CPS_0504 CPS_0505     FALSE 0.147 141.000 0.000 NA   NA
 838313 838314 CPS_0506 CPS_0507     TRUE 0.803 147.000 0.318 NA   NA
 838314 838315 CPS_0507 CPS_0508     TRUE 0.990 -7.000 0.302 NA   NA
 838315 838316 CPS_0508 CPS_0509     TRUE 0.955 -3.000 0.069 1.000   NA
 838316 838317 CPS_0509 CPS_0510     FALSE 0.066 303.000 0.000 NA   NA
 838317 838318 CPS_0510 CPS_0511     FALSE 0.086 270.000 0.000 NA   NA
 838318 838319 CPS_0511 CPS_0512     FALSE 0.111 239.000 0.000 NA   NA
 838320 838321 CPS_0513 CPS_0514     TRUE 0.650 21.000 0.000 NA   NA
 838322 838323 CPS_0515 CPS_0516     TRUE 0.708 -70.000 0.000 NA   NA
 838323 838324 CPS_0516 CPS_0517     TRUE 0.943 -10.000 0.077 NA   NA
 838324 838325 CPS_0517 CPS_0518     TRUE 0.615 33.000 0.019 NA   NA
 838327 838328 CPS_0520 CPS_0521     FALSE 0.147 131.000 0.000 NA   NA
 838329 838330 CPS_0522 CPS_0523     FALSE 0.360 57.000 0.000 NA   NA
 838330 838331 CPS_0523 CPS_0524     FALSE 0.098 254.000 0.000 NA   NA
 838331 838332 CPS_0524 CPS_0525     TRUE 0.938 -55.000 0.000 NA Y NA
 838332 838333 CPS_0525 CPS_0526     FALSE 0.367 56.000 0.000 NA   NA
 838334 838335 CPS_0527 CPS_0528     FALSE 0.070 297.000 0.000 NA   NA
 838337 838338 CPS_0530 CPS_0531     TRUE 0.704 -91.000 0.000 NA   NA
 838340 838341 CPS_0533 CPS_0534     TRUE 0.822 10.000 0.000 NA   NA
 838343 838344 CPS_0536 CPS_0537     FALSE 0.052 388.000 0.000 1.000 N NA
 838344 838345 CPS_0537 CPS_0538     TRUE 0.499 138.000 0.000 NA Y NA
 838346 838347 CPS_0539 CPS_0540   prmA TRUE 0.763 -18.000 0.000 NA   NA
 838348 838349 CPS_0541 CPS_0542     FALSE 0.279 77.000 0.000 NA   NA
 838349 838350 CPS_0542 CPS_0543     FALSE 0.373 55.000 0.000 NA   NA
 838350 838351 CPS_0543 CPS_0544     FALSE 0.142 168.000 0.006 NA   NA
 838353 838354 CPS_0546 CPS_0547     TRUE 0.807 11.000 0.000 NA   NA
 838354 838355 CPS_0547 CPS_0548     FALSE 0.032 404.000 0.000 NA   NA
 838355 838356 CPS_0548 CPS_0549     TRUE 0.792 155.000 0.312 1.000   NA
 838357 838358 CPS_0550 CPS_0551   fis TRUE 0.839 63.000 0.161 1.000 N NA
 838358 838359 CPS_0551 CPS_0552 fis purH TRUE 0.524 148.000 0.101 1.000 N NA
 838359 838360 CPS_0552 CPS_0553 purH   FALSE 0.147 142.000 0.000 NA   NA
 838360 838361 CPS_0553 CPS_0554     FALSE 0.084 275.000 0.000 NA   NA
 838361 838362 CPS_0554 CPS_0555   purD TRUE 0.453 41.000 0.000 NA   NA
 838362 838363 CPS_0555 CPS_0556 purD rrsF FALSE 0.009 885.000 0.000 NA   NA
 838363 838364 CPS_0556 CPS_0557 rrsF   FALSE 0.188 101.000 0.000 NA   NA
 838364 838365 CPS_0557 CPS_0558     FALSE 0.205 96.000 0.000 NA   NA
 838365 838366 CPS_0558 CPS_0559   rrlF FALSE 0.146 138.000 0.000 NA   NA
 838368 838369 CPS_0561 CPS_0562 rrfF rrsG FALSE 0.016 539.000 0.000 NA   NA
 838369 838370 CPS_0562 CPS_0563 rrsG   FALSE 0.188 101.000 0.000 NA   NA
 838370 838371 CPS_0563 CPS_0564     FALSE 0.216 93.000 0.000 NA   NA
 838371 838372 CPS_0564 CPS_0565   rrlG FALSE 0.146 138.000 0.000 NA   NA
 838374 838375 CPS_0567 CPS_0568 rrfG   FALSE 0.099 252.000 0.000 NA   NA
 838376 838377 CPS_0569 CPS_0570     TRUE 0.594 116.000 0.143 NA   NA
 838378 838379 CPS_0571 CPS_0572     FALSE 0.047 400.000 0.000 1.000 N NA
 838379 838380 CPS_0572 CPS_0573     TRUE 0.934 97.000 0.500 1.000 N NA
 838380 838381 CPS_0573 CPS_0574     TRUE 0.966 -7.000 0.000 NA Y NA
 838381 838382 CPS_0574 CPS_0575     TRUE 0.641 22.000 0.000 NA   NA
 838382 838383 CPS_0575 CPS_0576     FALSE 0.067 299.000 0.000 1.000   NA
 838383 838384 CPS_0576 CPS_0577     TRUE 0.999 11.000 0.957 1.000   NA
 838384 838385 CPS_0577 CPS_0578     FALSE 0.016 532.000 0.000 1.000   NA
 838385 838386 CPS_0578 CPS_0579     TRUE 0.999 0.000 1.000 1.000 N NA
 838386 838387 CPS_0579 CPS_0580     TRUE 0.990 66.000 1.000 1.000 N NA
 838387 838388 CPS_0580 CPS_0581     FALSE 0.146 138.000 0.000 NA   NA
 838388 838389 CPS_0581 CPS_0582     TRUE 0.800 -10.000 0.000 NA   NA
 838389 838390 CPS_0582 CPS_0583     TRUE 0.760 -16.000 0.000 1.000   NA
 838390 838391 CPS_0583 CPS_0584     FALSE 0.090 265.000 0.000 NA   NA
 838391 838392 CPS_0584 CPS_0585     TRUE 0.854 -3.000 0.000 NA   NA
 838392 838393 CPS_0585 CPS_0586     FALSE 0.131 211.000 0.000 NA   NA
 838393 838394 CPS_0586 CPS_0587     FALSE 0.048 342.000 0.000 1.000   NA
 838394 838395 CPS_0587 CPS_0588     TRUE 0.857 2.000 0.000 1.000   NA
 838395 838396 CPS_0588 CPS_0589     TRUE 0.987 -3.000 0.080 1.000 Y NA
 838396 838397 CPS_0589 CPS_0590     TRUE 0.965 61.000 0.297 NA Y NA
 838397 838398 CPS_0590 CPS_0591   ugd TRUE 0.942 16.000 0.015 NA Y NA
 838398 838399 CPS_0591 CPS_0592 ugd   TRUE 0.822 172.000 0.182 1.000 Y NA
 838399 838400 CPS_0592 CPS_0593   galU1 TRUE 0.733 65.000 0.000 1.000 Y NA
 838400 838401 CPS_0593 CPS_0594 galU1   FALSE 0.317 282.000 0.000 0.015 Y NA
 838402 838403 CPS_0595 CPS_0596     TRUE 0.476 70.000 0.032 NA   NA
 838403 838404 CPS_0596 CPS_0597     TRUE 0.898 168.000 0.516 NA   NA
 838404 838405 CPS_0597 CPS_0598     TRUE 0.924 76.000 0.372 NA   NA
 838406 838407 CPS_0599 CPS_0600   norC FALSE 0.078 263.000 0.000 0.024   NA
 838407 838408 CPS_0600 CPS_0601 norC norB TRUE 0.999 4.000 0.794 0.001   NA
 838410 838411 CPS_0603 CPS_0604     FALSE 0.029 420.000 0.000 NA   NA
 838411 838412 CPS_0604 CPS_0605     TRUE 0.938 11.000 0.069 NA   NA
 838412 838413 CPS_0605 CPS_0606   typA FALSE 0.076 282.000 0.000 1.000   NA
 838413 838414 CPS_0606 CPS_0607 typA   FALSE 0.056 329.000 0.000 NA   NA
 838416 838417 CPS_0609 CPS_0610 rbn dtd TRUE 0.954 -3.000 0.069 1.000   NA
 838417 838418 CPS_0610 CPS_0611 dtd rplN FALSE 0.371 261.000 0.000 1.000 Y NA
 838418 838419 CPS_0611 CPS_0612 rplN rplX TRUE 0.999 13.000 0.810 0.018 Y NA
 838419 838420 CPS_0612 CPS_0613 rplX rplE TRUE 0.999 13.000 0.758 0.013 Y NA
 838420 838421 CPS_0613 CPS_0614 rplE rpsN TRUE 0.998 5.000 0.496 0.013 Y NA
 838421 838422 CPS_0614 CPS_0615 rpsN rpsH TRUE 0.995 20.000 0.473 0.013 Y NA
 838422 838423 CPS_0615 CPS_0616 rpsH rplF TRUE 0.999 11.000 0.808 0.013 Y NA
 838423 838424 CPS_0616 CPS_0617 rplF rplR TRUE 0.999 10.000 0.815 0.013 Y NA
 838424 838425 CPS_0617 CPS_0618 rplR rpsE TRUE 0.999 10.000 0.814 0.018 Y NA
 838425 838426 CPS_0618 CPS_0619 rpsE rpmD TRUE 0.999 1.000 0.789 0.018 Y NA
 838426 838427 CPS_0619 CPS_0620 rpmD rplO TRUE 0.999 3.000 0.653 0.002 Y NA
 838427 838428 CPS_0620 CPS_0621 rplO secY TRUE 0.998 7.000 0.730 1.000 N NA
 838428 838429 CPS_0621 CPS_0622 secY rpmJ TRUE 0.848 31.000 0.089 1.000   NA
 838429 838430 CPS_0622 CPS_0623 rpmJ rpsM TRUE 0.651 152.000 0.194 0.013   NA
 838430 838431 CPS_0623 CPS_0624 rpsM rpsK TRUE 0.999 14.000 0.810 0.013 Y NA
 838431 838432 CPS_0624 CPS_0625 rpsK rpsD TRUE 0.992 33.000 0.509 0.018 Y NA
 838432 838433 CPS_0625 CPS_0626 rpsD rpoA TRUE 0.990 26.000 0.549 1.000 N NA
 838433 838434 CPS_0626 CPS_0627 rpoA rplQ TRUE 0.993 44.000 0.873 1.000 N NA
 838434 838435 CPS_0627 CPS_0628 rplQ prkB FALSE 0.186 196.000 0.000 1.000 N NA
 838436 838437 CPS_0629 CPS_0630   speD FALSE 0.170 222.000 0.000 1.000 N NA
 838437 838438 CPS_0630 CPS_0631 speD   TRUE 0.882 13.000 0.025 1.000 N NA
 838438 838439 CPS_0631 CPS_0632     FALSE 0.167 215.000 0.015 NA   NA
 838439 838440 CPS_0632 CPS_0633   astE FALSE 0.142 174.000 0.000 NA   NA
 838440 838441 CPS_0633 CPS_0634 astE astD TRUE 0.895 1.000 0.000 0.072 N NA
 838441 838442 CPS_0634 CPS_0635 astD astA TRUE 0.839 126.000 0.333 1.000 N NA
 838442 838443 CPS_0635 CPS_0636 astA argD TRUE 0.607 94.000 0.000 1.000 Y NA
 838443 838444 CPS_0636 CPS_0637 argD   FALSE 0.016 669.000 0.000 NA N NA
 838444 838445 CPS_0637 CPS_0638   pabA FALSE 0.213 213.000 0.013 NA N NA
 838445 838446 CPS_0638 CPS_0639 pabA   FALSE 0.138 170.000 0.000 1.000   NA
 838447 838448 CPS_0640 CPS_0641     FALSE 0.096 301.000 0.000 1.000 N NA
 838448 838449 CPS_0641 CPS_0642     TRUE 0.990 13.000 0.339 1.000 N NA
 838451 838452 CPS_0644 CPS_0645     FALSE 0.143 162.000 0.000 NA   NA
 838452 838453 CPS_0645 CPS_0646     FALSE 0.349 60.000 0.000 NA   NA
 838453 838454 CPS_0646 CPS_0647   feoA FALSE 0.213 94.000 0.000 NA   NA
 838454 838455 CPS_0647 CPS_0648 feoA feoB TRUE 0.791 51.000 0.000 1.000 Y NA
 838455 838456 CPS_0648 CPS_0649 feoB pfkA FALSE 0.018 598.000 0.000 1.000 N NA
 838457 838458 CPS_0650 CPS_0651     TRUE 0.999 7.000 0.566 1.000 Y NA
 838458 838459 CPS_0651 CPS_0652     TRUE 0.791 45.000 0.094 1.000   NA
 838459 838460 CPS_0652 CPS_0653     TRUE 0.996 10.000 0.556 0.001   NA
 838460 838461 CPS_0653 CPS_0654     FALSE 0.048 349.000 0.000 NA   NA
 838461 838462 CPS_0654 CPS_0655     FALSE 0.145 151.000 0.000 NA   NA
 838462 838463 CPS_0655 CPS_0656     FALSE 0.050 341.000 0.000 NA   NA
 838463 838464 CPS_0656 CPS_0657     TRUE 0.999 0.000 0.627 0.004 Y NA
 838464 838465 CPS_0657 CPS_0658     TRUE 0.959 56.000 0.242 1.000 Y NA
 838467 838468 CPS_0660 CPS_0661     TRUE 0.897 0.000 0.000 0.071 N NA
 838468 838469 CPS_0661 CPS_0662     FALSE 0.167 225.000 0.000 1.000 N NA
 838470 838471 CPS_0663 CPS_0664     TRUE 0.966 38.000 0.375 NA   NA
 838471 838472 CPS_0664 CPS_0665     TRUE 0.926 56.000 0.150 0.071 Y NA
 838472 838473 CPS_0665 CPS_0666     TRUE 0.960 11.000 0.000 1.000 Y NA
 838473 838474 CPS_0666 CPS_0667     FALSE 0.230 107.000 0.000 1.000 N NA
 838474 838475 CPS_0667 CPS_0668     FALSE 0.400 68.000 0.000 1.000 N NA
 838475 838476 CPS_0668 CPS_0669     TRUE 0.765 18.000 0.000 NA N NA
 838476 838477 CPS_0669 CPS_0670     FALSE 0.149 246.000 0.000 NA N NA
 838477 838478 CPS_0670 CPS_0671     TRUE 0.895 -3.000 0.000 1.000 N NA
 838478 838479 CPS_0671 CPS_0672     FALSE 0.335 63.000 0.000 NA   NA
 838479 838480 CPS_0672 CPS_0673     TRUE 0.556 30.000 0.000 NA   NA
 838481 838482 CPS_0674 CPS_0675     FALSE 0.199 147.000 0.000 1.000 N NA
 838483 838484 CPS_0676 CPS_0677     TRUE 0.448 42.000 0.000 NA   NA
 838485 838486 CPS_0678 CPS_0679     TRUE 0.902 0.000 0.017 NA   NA
 838486 838487 CPS_0679 CPS_0680     FALSE 0.143 156.000 0.000 NA   NA
 838487 838488 CPS_0680 CPS_0681     TRUE 0.999 3.000 0.750 1.000 Y NA
 838488 838489 CPS_0681 CPS_0682     FALSE 0.060 316.000 0.000 NA   NA
 838489 838490 CPS_0682 CPS_0683     TRUE 0.800 -10.000 0.000 NA   NA
 838490 838491 CPS_0683 CPS_0684     FALSE 0.201 130.000 0.000 1.000 N NA
 838492 838493 CPS_0685 CPS_0686     TRUE 0.829 13.000 0.000 1.000 N NA
 838493 838494 CPS_0686 CPS_0687     FALSE 0.130 200.000 0.000 1.000   NA
 838494 838495 CPS_0687 CPS_0688     FALSE 0.011 621.000 0.000 1.000   NA
 838495 838496 CPS_0688 CPS_0689     FALSE 0.186 208.000 0.000 NA N NA
 838496 838497 CPS_0689 CPS_0690     FALSE 0.133 206.000 0.000 NA   NA
 838497 838498 CPS_0690 CPS_0691     TRUE 0.845 5.000 0.000 NA   NA
 838500 838501 CPS_0693 CPS_0694     FALSE 0.324 331.000 0.150 NA   NA
 838501 838502 CPS_0694 CPS_0695     TRUE 0.684 92.000 0.121 NA N NA
 838502 838503 CPS_0695 CPS_0696     FALSE 0.031 407.000 0.000 NA   NA
 838503 838504 CPS_0696 CPS_0697     FALSE 0.168 108.000 0.000 NA   NA
 838506 838507 CPS_0699 CPS_0700     TRUE 0.838 7.000 0.000 NA   NA
 838507 838508 CPS_0700 CPS_0701     TRUE 0.989 10.000 0.286 NA   NA
 838508 838509 CPS_0701 CPS_0702     FALSE 0.399 51.000 0.000 NA   NA
 838509 838510 CPS_0702 CPS_0703     FALSE 0.216 93.000 0.000 NA   NA
 838511 838512 CPS_0704 CPS_0705     FALSE 0.134 203.000 0.000 NA   NA
 838512 838513 CPS_0705 CPS_0706     TRUE 0.841 6.000 0.000 NA   NA
 838513 838514 CPS_0706 CPS_0707     TRUE 0.695 17.000 0.000 NA   NA
 838514 838515 CPS_0707 CPS_0708     TRUE 0.747 -27.000 0.000 NA   NA
 838515 838516 CPS_0708 CPS_0709   ppiA2 TRUE 0.818 238.000 0.417 NA   NA
 838516 838517 CPS_0709 CPS_0710 ppiA2   TRUE 0.927 50.000 0.244 NA N NA
 838517 838518 CPS_0710 CPS_0711     TRUE 0.983 14.000 0.248 NA N NA
 838519 838520 CPS_0712 CPS_0713 bolA   FALSE 0.242 137.000 0.028 NA   NA
 838521 838522 CPS_0714 CPS_0715     FALSE 0.248 84.000 0.000 NA   NA
 838522 838523 CPS_0715 CPS_0716     FALSE 0.125 220.000 0.000 NA   NA
 838524 838525 CPS_0717 CPS_0718     FALSE 0.118 455.000 0.000 1.000 Y NA
 838525 838526 CPS_0718 CPS_0719     FALSE 0.015 542.000 0.000 1.000   NA
 838527 838528 CPS_0720 CPS_0721     FALSE 0.141 134.000 0.000 1.000   NA
 838529 838530 CPS_0722 CPS_0723   natA TRUE 0.911 63.000 0.292 1.000   NA
 838530 838531 CPS_0723 CPS_0724 natA natB TRUE 0.996 -3.000 0.271 NA Y NA
 838531 838532 CPS_0724 CPS_0725 natB   FALSE 0.050 397.000 0.000 NA N NA
 838532 838533 CPS_0725 CPS_0726     TRUE 0.854 -3.000 0.000 NA   NA
 838535 838536 CPS_0728 CPS_0729 glyA1   FALSE 0.153 311.000 0.032 NA N NA
 838536 838537 CPS_0729 CPS_0730   ribD TRUE 0.901 74.000 0.277 NA N NA
 838537 838538 CPS_0730 CPS_0731 ribD ribE1 TRUE 0.986 48.000 0.456 1.000 Y NA
 838538 838539 CPS_0731 CPS_0732 ribE1 ribB TRUE 0.662 142.000 0.065 1.000 Y NA
 838539 838540 CPS_0732 CPS_0733 ribB   FALSE 0.143 162.000 0.000 NA   NA
 838540 838541 CPS_0733 CPS_0734     FALSE 0.367 56.000 0.000 NA   NA
 838541 838542 CPS_0734 CPS_0735     TRUE 0.886 -13.000 0.034 NA   NA
 838543 838544 CPS_0736 CPS_0737     FALSE 0.344 61.000 0.000 NA   NA
 838544 838545 CPS_0737 CPS_0738   valS FALSE 0.029 475.000 0.000 1.000 N NA
 838545 838546 CPS_0738 CPS_0739 valS holC TRUE 0.494 132.000 0.089 1.000 N NA
 838546 838547 CPS_0739 CPS_0740 holC pepA TRUE 0.933 95.000 0.494 1.000 N NA
 838548 838549 CPS_0741 CPS_0742     TRUE 0.867 0.000 0.000 NA   NA
 838549 838550 CPS_0742 CPS_0743     TRUE 0.867 0.000 0.000 NA   NA
 838551 838552 CPS_0744 CPS_0745     FALSE 0.064 309.000 0.000 NA   NA
 838552 838553 CPS_0745 CPS_0746     TRUE 0.998 15.000 0.833 NA N NA
 838554 838555 CPS_0747 CPS_0748     FALSE 0.124 222.000 0.000 NA   NA
 838555 838556 CPS_0748 CPS_0749   ppiC1 FALSE 0.184 102.000 0.000 NA   NA
 838556 838557 CPS_0749 CPS_0750 ppiC1   FALSE 0.025 440.000 0.000 NA   NA
 838559 838560 CPS_0752 CPS_0753     TRUE 0.854 -3.000 0.000 NA   NA
 838560 838561 CPS_0753 CPS_0754     FALSE 0.055 302.000 0.000 0.002   NA
 838561 838562 CPS_0754 CPS_0755     FALSE 0.295 91.000 0.000 1.000 N NA
 838563 838564 CPS_0756 CPS_0757     FALSE 0.033 399.000 0.000 NA   NA
 838564 838565 CPS_0757 CPS_0758     FALSE 0.411 49.000 0.000 NA   NA
 838565 838566 CPS_0758 CPS_0759     FALSE 0.088 268.000 0.000 NA   NA
 838567 838568 CPS_0760 CPS_0761     FALSE 0.009 874.000 0.000 NA   NA
 838568 838569 CPS_0761 CPS_0762     TRUE 0.913 21.000 0.010 0.001 Y NA
 838569 838570 CPS_0762 CPS_0763     FALSE 0.080 329.000 0.000 1.000 N NA
 838570 838571 CPS_0763 CPS_0764     FALSE 0.011 619.000 0.000 NA   NA
 838571 838572 CPS_0764 CPS_0765     TRUE 0.518 33.000 0.000 NA   NA
 838572 838573 CPS_0765 CPS_0766     TRUE 0.867 0.000 0.000 NA   NA
 838573 838574 CPS_0766 CPS_0767     FALSE 0.030 407.000 0.000 1.000   NA
 838574 838575 CPS_0767 CPS_0768   selD FALSE 0.138 166.000 0.000 1.000   NA
 838575 838576 CPS_0768 CPS_0769 selD   TRUE 0.988 -3.000 0.214 NA   NA
 838578 838579 CPS_0771 CPS_0772     FALSE 0.195 99.000 0.000 NA   NA
 838579 838580 CPS_0772 CPS_0773     TRUE 0.701 -100.000 0.000 NA   NA
 838580 838581 CPS_0773 CPS_0774     FALSE 0.046 349.000 0.000 1.000   NA
 838581 838582 CPS_0774 CPS_0775     FALSE 0.240 104.000 0.000 1.000 N NA
 838582 838583 CPS_0775 CPS_0776     TRUE 0.999 18.000 1.000 NA Y NA
 838583 838584 CPS_0776 CPS_0777     FALSE 0.143 169.000 0.000 NA   NA
 838584 838585 CPS_0777 CPS_0778     FALSE 0.147 134.000 0.000 NA   NA
 838585 838586 CPS_0778 CPS_0779     TRUE 0.999 -13.000 0.667 1.000 Y NA
 838586 838587 CPS_0779 CPS_0780     FALSE 0.202 129.000 0.000 1.000 N NA
 838589 838590 CPS_0782 CPS_0783     TRUE 0.716 -67.000 0.000 NA   NA
 838591 838592 CPS_0784 CPS_0785     FALSE 0.049 346.000 0.000 NA   NA
 838596 838597 CPS_0789 CPS_0790     FALSE 0.013 593.000 0.000 NA   NA
 838597 838598 CPS_0790 CPS_0791     FALSE 0.145 150.000 0.000 NA   NA
 838598 838599 CPS_0791 CPS_0792     TRUE 0.709 16.000 0.000 NA   NA
 838599 838600 CPS_0792 CPS_0793     FALSE 0.240 86.000 0.000 NA   NA
 838601 838602 CPS_0794 CPS_0795     TRUE 0.567 29.000 0.000 NA   NA
 838602 838603 CPS_0795 CPS_0796     FALSE 0.268 79.000 0.000 NA   NA
 838604 838605 CPS_0797 CPS_0798     FALSE 0.188 99.000 0.000 1.000   NA
 838606 838607 CPS_0799 CPS_0800     FALSE 0.159 114.000 0.000 NA   NA
 838609 838610 CPS_0802 CPS_0803     FALSE 0.143 163.000 0.000 NA   NA
 838610 838611 CPS_0803 CPS_0804     FALSE 0.167 231.000 0.000 NA N NA
 838611 838612 CPS_0804 CPS_0805     TRUE 0.563 130.000 0.118 NA N NA
 838612 838613 CPS_0805 CPS_0806     TRUE 0.544 31.000 0.000 NA   NA
 838613 838614 CPS_0806 CPS_0807     TRUE 0.862 2.000 0.000 NA   NA
 838615 838616 CPS_0808 CPS_0809     TRUE 0.453 41.000 0.000 NA   NA
 838616 838617 CPS_0809 CPS_0810     TRUE 0.470 101.000 0.071 NA   NA
 838617 838618 CPS_0810 CPS_0811     TRUE 0.935 -7.000 0.050 NA   NA
 838618 838619 CPS_0811 CPS_0812     FALSE 0.284 257.000 0.070 NA   NA
 838619 838620 CPS_0812 CPS_0813     TRUE 0.518 33.000 0.000 NA   NA
 838620 838621 CPS_0813 CPS_0814     TRUE 0.432 38.000 0.000 0.036   NA
 838626 838627 CPS_0819 CPS_0820     FALSE 0.063 304.000 0.000 1.000   NA
 838628 838629 CPS_0821 CPS_0822     FALSE 0.335 63.000 0.000 NA   NA
 838630 838631 CPS_0823 CPS_0824     TRUE 0.824 198.000 0.333 NA N NA
 838631 838632 CPS_0824 CPS_0825     TRUE 0.744 -28.000 0.000 NA   NA
 838633 838634 CPS_0826 CPS_0827     TRUE 0.571 33.000 0.017 0.009   NA
 838634 838635 CPS_0827 CPS_0828     FALSE 0.112 232.000 0.000 1.000   NA
 838635 838636 CPS_0828 CPS_0829     TRUE 0.478 36.000 0.000 1.000   NA
 838637 838638 CPS_0830 CPS_0831     TRUE 0.594 27.000 0.000 NA   NA
 838640 838641 CPS_0833 CPS_0834     FALSE 0.146 145.000 0.000 NA   NA
 838641 838642 CPS_0834 CPS_0835     FALSE 0.032 403.000 0.000 NA   NA
 838642 838643 CPS_0835 CPS_0836     FALSE 0.310 69.000 0.000 NA   NA
 838643 838644 CPS_0836 CPS_0837     TRUE 0.700 -103.000 0.000 NA   NA
 838648 838649 CPS_0841 CPS_0842 atsA   FALSE 0.144 153.000 0.000 NA   NA
 838651 838652 CPS_0844 CPS_0845     FALSE 0.136 193.000 0.000 NA   NA
 838652 838653 CPS_0845 CPS_0846     TRUE 0.604 62.000 0.050 NA   NA
 838653 838654 CPS_0846 CPS_0847     TRUE 0.922 3.000 0.030 NA   NA
 838655 838656 CPS_0848 CPS_0849 hmpA   TRUE 0.611 78.000 0.063 1.000 N NA
 838656 838657 CPS_0849 CPS_0850     TRUE 0.997 2.000 0.500 NA   NA
 838659 838660 CPS_0852 CPS_0853     FALSE 0.028 421.000 0.000 NA   NA
 838660 838661 CPS_0853 CPS_0854     FALSE 0.074 285.000 0.000 1.000   NA
 838663 838664 CPS_0856 CPS_0857   pqqE TRUE 0.890 -3.000 0.021 0.032   NA
 838664 838665 CPS_0857 CPS_0858 pqqE pqqD TRUE 0.984 -7.000 0.211 0.001   NA
 838665 838666 CPS_0858 CPS_0859 pqqD pqqC TRUE 0.989 -3.000 0.246 0.001   NA
 838666 838667 CPS_0859 CPS_0860 pqqC   TRUE 0.739 -31.000 0.000 NA   NA
 838667 838668 CPS_0860 CPS_0861   pqqB FALSE 0.135 201.000 0.000 NA   NA
 838668 838669 CPS_0861 CPS_0862 pqqB pqqA FALSE 0.165 239.000 0.028 0.001   NA
 838669 838670 CPS_0862 CPS_0863 pqqA pip1 FALSE 0.158 110.000 0.000 1.000   NA
 838670 838671 CPS_0863 CPS_0864 pip1 rpsQ FALSE 0.032 462.000 0.000 1.000 N NA
 838671 838672 CPS_0864 CPS_0865 rpsQ rpmC TRUE 1.000 0.000 0.828 0.013 Y NA
 838672 838673 CPS_0865 CPS_0866 rpmC rplP TRUE 0.999 0.000 0.802 0.013 Y NA
 838673 838674 CPS_0866 CPS_0867 rplP rpsC TRUE 0.999 12.000 0.828 0.017 Y NA
 838674 838675 CPS_0867 CPS_0868 rpsC rplV TRUE 0.999 13.000 0.719 0.017 Y NA
 838675 838676 CPS_0868 CPS_0869 rplV rpsS TRUE 0.999 12.000 0.769 0.017 Y NA
 838676 838677 CPS_0869 CPS_0870 rpsS rplB TRUE 0.991 82.000 0.820 0.017 Y NA
 838677 838678 CPS_0870 CPS_0871 rplB rplW TRUE 0.999 13.000 0.849 0.017 Y NA
 838678 838679 CPS_0871 CPS_0872 rplW rplD TRUE 0.999 -3.000 0.513 0.013 Y NA
 838679 838680 CPS_0872 CPS_0873 rplD rplC TRUE 0.996 17.000 0.486 0.013 Y NA
 838680 838681 CPS_0873 CPS_0874 rplC rpsJ TRUE 0.993 15.000 0.307 0.017 Y NA
 838682 838683 CPS_0875 CPS_0876 fusA1   FALSE 0.184 102.000 0.000 NA   NA
 838684 838685 CPS_0877 CPS_0878     FALSE 0.023 455.000 0.000 NA   NA
 838686 838687 CPS_0879 CPS_0880     TRUE 0.800 -10.000 0.000 NA   NA
 838688 838689 CPS_0881 CPS_0882     FALSE 0.227 90.000 0.000 NA   NA
 838689 838690 CPS_0882 CPS_0883     TRUE 0.854 -3.000 0.000 NA   NA
 838690 838691 CPS_0883 CPS_0884     TRUE 0.973 121.000 1.000 NA   NA
 838691 838692 CPS_0884 CPS_0885     TRUE 0.709 16.000 0.000 NA   NA
 838692 838693 CPS_0885 CPS_0886     TRUE 0.838 7.000 0.000 NA   NA
 838693 838694 CPS_0886 CPS_0887     TRUE 0.607 26.000 0.000 NA   NA
 838694 838695 CPS_0887 CPS_0888     TRUE 0.800 -10.000 0.000 NA   NA
 838695 838696 CPS_0888 CPS_0889     TRUE 0.857 3.000 0.000 NA   NA
 838699 838700 CPS_0892 CPS_0893     TRUE 0.722 -58.000 0.000 NA   NA
 838701 838702 CPS_0894 CPS_0895     TRUE 0.983 -69.000 0.167 0.053 Y NA
 838702 838703 CPS_0895 CPS_0896     FALSE 0.240 86.000 0.000 NA   NA
 838703 838704 CPS_0896 CPS_0897     FALSE 0.188 101.000 0.000 NA   NA
 838704 838705 CPS_0897 CPS_0898     TRUE 0.854 -3.000 0.000 NA   NA
 838705 838706 CPS_0898 CPS_0899     TRUE 0.733 -34.000 0.000 NA   NA
 838709 838710 CPS_0902 CPS_0903     TRUE 0.531 32.000 0.000 NA   NA
 838710 838711 CPS_0903 CPS_0904     TRUE 0.572 28.000 0.004 NA   NA
 838711 838712 CPS_0904 CPS_0905     FALSE 0.303 71.000 0.000 NA   NA
 838712 838713 CPS_0905 CPS_0906     TRUE 0.867 0.000 0.000 NA   NA
 838713 838714 CPS_0906 CPS_0907     FALSE 0.310 69.000 0.000 NA   NA
 838715 838716 CPS_0908 CPS_0909 hutH hutU TRUE 0.901 163.000 0.315 0.001 Y NA
 838716 838717 CPS_0909 CPS_0910 hutU hutC TRUE 0.461 140.000 0.077 1.000 N NA
 838718 838719 CPS_0911 CPS_0912 hutI   FALSE 0.014 557.000 0.000 1.000   NA
 838719 838720 CPS_0912 CPS_0913     TRUE 0.596 26.000 0.000 1.000   NA
 838720 838721 CPS_0913 CPS_0914     TRUE 0.996 15.000 0.700 NA   NA
 838726 838727 CPS_0919 CPS_0920   uvrA FALSE 0.287 93.000 0.000 1.000 N NA
 838727 838728 CPS_0920 CPS_0921 uvrA   FALSE 0.038 377.000 0.000 NA   NA
 838729 838730 CPS_0922 CPS_0923     FALSE 0.146 135.000 0.000 NA   NA
 838732 838733 CPS_0925 CPS_0926 fadH1 pssA FALSE 0.204 126.000 0.000 1.000 N NA
 838735 838736 CPS_0928 CPS_0929     FALSE 0.143 162.000 0.000 NA   NA
 838736 838737 CPS_0929 CPS_0930   ssb FALSE 0.043 360.000 0.000 NA   NA
 838741 838742 CPS_0934 CPS_0935     FALSE 0.314 86.000 0.000 1.000 N NA
 838742 838743 CPS_0935 CPS_0936     FALSE 0.363 141.000 0.044 1.000 N NA
 838743 838744 CPS_0936 CPS_0937     TRUE 0.776 114.000 0.241 1.000 N NA
 838745 838746 CPS_0938 CPS_0939     FALSE 0.138 155.000 0.000 1.000   NA
 838747 838748 CPS_0940 CPS_0941     TRUE 0.959 -12.000 0.098 1.000 N NA
 838749 838750 CPS_0942 CPS_0943   bdhA1 FALSE 0.045 351.000 0.000 1.000   NA
 838750 838751 CPS_0943 CPS_0944 bdhA1   FALSE 0.017 530.000 0.000 NA   NA
 838751 838752 CPS_0944 CPS_0945     FALSE 0.140 181.000 0.000 NA   NA
 838752 838753 CPS_0945 CPS_0946   accC FALSE 0.165 109.000 0.000 NA   NA
 838753 838754 CPS_0946 CPS_0947 accC accB TRUE 0.987 23.000 0.275 0.001 Y NA
 838754 838755 CPS_0947 CPS_0948 accB aroQ TRUE 0.849 91.000 0.254 1.000 N NA
 838756 838757 CPS_0949 CPS_0950     FALSE 0.110 240.000 0.000 NA   NA
 838757 838758 CPS_0950 CPS_0951     TRUE 0.992 -22.000 0.458 NA   NA
 838758 838759 CPS_0951 CPS_0952     TRUE 0.966 11.000 0.125 1.000   NA
 838760 838761 CPS_0953 CPS_0954 dsbD cutA TRUE 0.969 6.000 0.092 1.000 N NA
 838762 838763 CPS_0955 CPS_0956 fsxA groES FALSE 0.296 131.000 0.040 NA   NA
 838763 838764 CPS_0956 CPS_0957 groES groEL TRUE 0.965 181.000 0.631 0.008 Y NA
 838765 838766 CPS_0958 CPS_0959     FALSE 0.114 235.000 0.000 NA   NA
 838766 838767 CPS_0959 CPS_0960     TRUE 0.850 4.000 0.000 NA   NA
 838768 838769 CPS_0961 CPS_0962     TRUE 0.976 18.000 0.279 NA   NA
 838769 838770 CPS_0962 CPS_0963     FALSE 0.349 60.000 0.000 NA   NA
 838771 838772 CPS_0964 CPS_0965     FALSE 0.268 79.000 0.000 NA   NA
 838773 838774 CPS_0966 CPS_0967     FALSE 0.143 160.000 0.000 NA   NA
 838774 838775 CPS_0967 CPS_0968     FALSE 0.248 84.000 0.000 NA   NA
 838775 838776 CPS_0968 CPS_0969     FALSE 0.093 262.000 0.000 NA   NA
 838777 838778 CPS_0970 CPS_0971     FALSE 0.271 100.000 0.021 NA   NA
 838779 838780 CPS_0972 CPS_0973 efp   FALSE 0.400 49.000 0.000 1.000   NA
 838780 838781 CPS_0973 CPS_0974     FALSE 0.072 290.000 0.000 1.000   NA
 838782 838783 CPS_0975 CPS_0976   glk2 FALSE 0.383 254.000 0.000 1.000 Y NA
 838783 838784 CPS_0976 CPS_0977 glk2   FALSE 0.215 115.000 0.000 1.000 N NA
 838786 838787 CPS_0979 CPS_0980     TRUE 0.859 32.000 0.103 1.000   NA
 838789 838790 CPS_0982 CPS_0983 glk3   TRUE 0.970 4.000 0.000 1.000 Y NA
 838791 838792 CPS_0984 CPS_0985     TRUE 0.649 82.000 0.000 0.005 Y NA
 838793 838794 CPS_0986 CPS_0987     FALSE 0.043 413.000 0.000 1.000 N NA
 838794 838795 CPS_0987 CPS_0988     TRUE 0.940 164.000 0.667 1.000 N NA
 838795 838796 CPS_0988 CPS_0989     FALSE 0.058 326.000 0.000 NA   NA
 838796 838797 CPS_0989 CPS_0990     FALSE 0.175 105.000 0.000 NA   NA
 838799 838800 CPS_0992 CPS_0993     TRUE 0.569 201.000 0.154 NA   NA
 838800 838801 CPS_0993 CPS_0994     FALSE 0.013 562.000 0.000 1.000   NA
 838802 838803 CPS_0995 CPS_0996     FALSE 0.224 109.000 0.000 1.000 N NA
 838805 838806 CPS_0998 CPS_0999     TRUE 0.980 -7.000 0.176 NA   NA
 838808 838809 CPS_1001 CPS_1002     TRUE 0.744 -28.000 0.000 NA   NA
 838809 838810 CPS_1002 CPS_1003     FALSE 0.019 489.000 0.000 NA   NA
 838810 838811 CPS_1003 CPS_1004     FALSE 0.143 170.000 0.000 NA   NA
 838811 838812 CPS_1004 CPS_1005     TRUE 0.998 1.000 0.688 0.100 N NA
 838812 838813 CPS_1005 CPS_1006     TRUE 0.862 2.000 0.000 NA   NA
 838813 838814 CPS_1006 CPS_1007     FALSE 0.021 469.000 0.000 NA   NA
 838816 838817 CPS_1009 CPS_1010     FALSE 0.146 146.000 0.000 NA   NA
 838817 838818 CPS_1010 CPS_1011     TRUE 0.443 43.000 0.000 NA   NA
 838818 838819 CPS_1011 CPS_1012     FALSE 0.169 105.000 0.000 1.000   NA
 838819 838820 CPS_1012 CPS_1013     TRUE 0.998 -3.000 0.374 0.050 Y NA
 838820 838821 CPS_1013 CPS_1014     TRUE 0.993 -3.000 0.303 1.000 N NA
 838821 838822 CPS_1014 CPS_1015     FALSE 0.214 117.000 0.000 1.000 N NA
 838822 838823 CPS_1015 CPS_1016   plsC FALSE 0.195 161.000 0.000 1.000 N NA
 838823 838824 CPS_1016 CPS_1017 plsC   FALSE 0.319 301.000 0.121 NA   NA
 838824 838825 CPS_1017 CPS_1018     FALSE 0.143 167.000 0.000 NA   NA
 838827 838828 CPS_1020 CPS_1021 pgi1   FALSE 0.020 561.000 0.000 1.000 N NA
 838828 838829 CPS_1021 CPS_1022     TRUE 0.970 180.000 1.000 NA   NA
 838829 838830 CPS_1022 CPS_1023     TRUE 0.996 28.000 1.000 NA   NA
 838830 838831 CPS_1023 CPS_1024     TRUE 0.774 63.000 0.125 NA   NA
 838831 838832 CPS_1024 CPS_1025     FALSE 0.045 355.000 0.000 NA   NA
 838832 838833 CPS_1025 CPS_1026     FALSE 0.125 448.000 0.000 NA Y NA
 838833 838834 CPS_1026 CPS_1027   nagA TRUE 0.683 98.000 0.035 NA Y NA
 838834 838835 CPS_1027 CPS_1028 nagA   TRUE 0.667 107.000 0.047 1.000 Y NA
 838835 838836 CPS_1028 CPS_1029     FALSE 0.065 306.000 0.000 NA   NA
 838837 838838 CPS_1030 CPS_1031 ccmE ccmD TRUE 0.995 0.000 0.344 1.000 N NA
 838838 838839 CPS_1031 CPS_1032 ccmD ccmC TRUE 0.969 60.000 0.501 1.000 N NA
 838839 838840 CPS_1032 CPS_1033 ccmC ccmB TRUE 0.981 0.000 0.036 0.001 Y NA
 838840 838841 CPS_1033 CPS_1034 ccmB ccmA TRUE 0.897 38.000 0.050 0.002 Y NA
 838842 838843 CPS_1035 CPS_1036 ccmF dsbE TRUE 0.999 3.000 0.804 0.002 Y NA
 838843 838844 CPS_1036 CPS_1037 dsbE ccmH TRUE 0.995 2.000 0.196 NA Y NA
 838844 838845 CPS_1037 CPS_1038 ccmH   TRUE 0.591 98.000 0.000 NA Y NA
 838845 838846 CPS_1038 CPS_1039   hemH FALSE 0.015 679.000 0.000 1.000 N NA
 838846 838847 CPS_1039 CPS_1040 hemH dinB FALSE 0.224 109.000 0.000 1.000 N NA
 838847 838848 CPS_1040 CPS_1041 dinB   TRUE 0.661 20.000 0.000 NA   NA
 838848 838849 CPS_1041 CPS_1042   alaS FALSE 0.394 52.000 0.000 NA   NA
 838849 838850 CPS_1042 CPS_1043 alaS csrA FALSE 0.046 454.000 0.020 1.000 N NA
 838850 838851 CPS_1043 CPS_1044 csrA   FALSE 0.040 369.000 0.000 NA   NA
 838851 838852 CPS_1044 CPS_1045     FALSE 0.260 81.000 0.000 NA   NA
 838852 838853 CPS_1045 CPS_1046     FALSE 0.321 66.000 0.000 NA   NA
 838853 838854 CPS_1046 CPS_1047     FALSE 0.146 145.000 0.000 NA   NA
 838854 838855 CPS_1047 CPS_1048   oadG FALSE 0.008 1261.000 0.000 NA   NA
 838855 838856 CPS_1048 CPS_1049 oadG oadA TRUE 0.983 66.000 0.810 0.001   NA
 838856 838857 CPS_1049 CPS_1050 oadA oadB TRUE 1.000 9.000 0.976 0.001 Y NA
 838857 838858 CPS_1050 CPS_1051 oadB   FALSE 0.286 76.000 0.000 NA   NA
 838858 838859 CPS_1051 CPS_1052     FALSE 0.108 242.000 0.000 NA   NA
 838860 838861 CPS_1053 CPS_1054 pdxH   FALSE 0.162 111.000 0.000 NA   NA
 838861 838862 CPS_1054 CPS_1055   napC FALSE 0.012 596.000 0.000 NA   NA
 838862 838863 CPS_1055 CPS_1056 napC napB TRUE 0.991 9.000 0.143 1.000 Y NA
 838863 838864 CPS_1056 CPS_1057 napB napA TRUE 0.999 10.000 0.643 0.001 Y NA
 838864 838865 CPS_1057 CPS_1058 napA napD TRUE 0.459 57.000 0.000 NA N NA
 838865 838866 CPS_1058 CPS_1059 napD napF TRUE 0.762 20.000 0.023 NA   NA
 838866 838867 CPS_1059 CPS_1060 napF napE TRUE 0.947 5.000 0.058 NA   NA
 838869 838870 CPS_1062 CPS_1063     TRUE 0.754 -22.000 0.000 NA   NA
 838870 838871 CPS_1063 CPS_1064     TRUE 0.704 -91.000 0.000 NA   NA
 838871 838872 CPS_1064 CPS_1065     FALSE 0.088 268.000 0.000 NA   NA
 838873 838874 CPS_1066 CPS_1067     TRUE 0.986 33.000 0.344 0.099 Y NA
 838874 838875 CPS_1067 CPS_1068     FALSE 0.192 192.000 0.000 NA N NA
 838875 838876 CPS_1068 CPS_1069     TRUE 0.443 43.000 0.000 NA   NA
 838876 838877 CPS_1069 CPS_1070     TRUE 0.735 -33.000 0.000 NA   NA
 838877 838878 CPS_1070 CPS_1071     TRUE 0.716 -67.000 0.000 NA   NA
 838878 838879 CPS_1071 CPS_1072   ispD TRUE 0.956 24.000 0.185 1.000 N NA
 838879 838880 CPS_1072 CPS_1073 ispD ispF TRUE 0.975 71.000 0.419 1.000 Y NA
 838880 838881 CPS_1073 CPS_1074 ispF   TRUE 0.845 57.000 0.173 1.000   NA
 838881 838882 CPS_1074 CPS_1075   surE TRUE 0.989 4.000 0.235 1.000   NA
 838882 838883 CPS_1075 CPS_1076 surE pcm TRUE 0.983 19.000 0.353 1.000   NA
 838883 838884 CPS_1076 CPS_1077 pcm   TRUE 0.953 0.000 0.055 NA   NA
 838884 838885 CPS_1077 CPS_1078     TRUE 0.531 85.000 0.067 NA   NA
 838885 838886 CPS_1078 CPS_1079   rpoS TRUE 0.684 110.000 0.169 1.000 N NA
 838886 838887 CPS_1079 CPS_1080 rpoS nqrA FALSE 0.025 516.000 0.000 1.000 N NA
 838887 838888 CPS_1080 CPS_1081 nqrA nqrB TRUE 0.987 3.000 0.083 0.002 Y NA
 838888 838889 CPS_1081 CPS_1082 nqrB nqrC TRUE 0.996 -7.000 0.324 0.002 Y NA
 838889 838890 CPS_1082 CPS_1083 nqrC nqrD TRUE 0.997 0.000 0.312 0.002 Y NA
 838890 838891 CPS_1083 CPS_1084 nqrD nqrE TRUE 0.973 3.000 0.014 0.002 Y NA
 838891 838892 CPS_1084 CPS_1085 nqrE nqrF TRUE 0.817 63.000 0.043 0.002 Y NA
 838892 838893 CPS_1085 CPS_1086 nqrF apbE TRUE 0.876 246.000 0.519 1.000 N NA
 838893 838894 CPS_1086 CPS_1087 apbE   TRUE 0.886 134.000 0.481 NA   NA
 838895 838896 CPS_1088 CPS_1089 dxs ispA TRUE 0.961 55.000 0.246 1.000 Y NA
 838896 838897 CPS_1089 CPS_1090 ispA xseB TRUE 0.987 0.000 0.177 1.000 N NA
 838897 838898 CPS_1090 CPS_1091 xseB   FALSE 0.083 277.000 0.000 NA   NA
 838899 838900 CPS_1092 CPS_1093     TRUE 0.991 45.000 0.566 1.000 Y NA
 838900 838901 CPS_1093 CPS_1094   thiI FALSE 0.190 274.000 0.029 1.000 N NA
 838902 838903 CPS_1095 CPS_1096 panE   FALSE 0.362 99.000 0.038 NA   NA
 838903 838904 CPS_1096 CPS_1097     TRUE 0.747 14.000 0.000 NA   NA
 838905 838906 CPS_1098 CPS_1099     FALSE 0.142 174.000 0.000 NA   NA
 838906 838907 CPS_1099 CPS_1100   metA FALSE 0.024 538.000 0.000 NA N NA
 838907 838908 CPS_1100 CPS_1101 metA metH TRUE 0.602 95.000 0.006 1.000 Y NA
 838908 838909 CPS_1101 CPS_1102 metH   FALSE 0.149 128.000 0.000 NA   NA
 838910 838911 CPS_1103 CPS_1104 yfiA1   FALSE 0.074 341.000 0.000 NA N NA
 838911 838912 CPS_1104 CPS_1105     FALSE 0.131 249.000 0.000 0.039 N NA
 838916 838917 CPS_1109 CPS_1110   argS FALSE 0.111 286.000 0.000 NA N NA
 838917 838918 CPS_1110 CPS_1111 argS prfC FALSE 0.230 338.000 0.006 0.039 Y NA
 838920 838921 CPS_1113 CPS_1114   rimI FALSE 0.137 191.000 0.000 NA   NA
 838921 838922 CPS_1114 CPS_1115 rimI   TRUE 0.949 14.000 0.121 1.000   NA
 838922 838923 CPS_1115 CPS_1116     FALSE 0.135 201.000 0.000 NA   NA
 838926 838927 CPS_1119 CPS_1120 queA tgt TRUE 0.965 75.000 0.360 0.001 Y NA
 838927 838928 CPS_1120 CPS_1121 tgt yajC TRUE 0.817 192.000 0.325 NA N NA
 838928 838929 CPS_1121 CPS_1122 yajC secD TRUE 0.485 204.000 0.009 NA Y NA
 838929 838930 CPS_1122 CPS_1123 secD secF TRUE 0.944 21.000 0.045 0.001 Y NA
 838936 838937 CPS_1129 CPS_1130   cysE TRUE 0.929 39.000 0.208 1.000 N NA
 838937 838938 CPS_1130 CPS_1131 cysE   TRUE 0.637 285.000 0.271 1.000 N NA
 838938 838939 CPS_1131 CPS_1132   iscS TRUE 0.967 49.000 0.424 1.000 N NA
 838939 838940 CPS_1132 CPS_1133 iscS iscU TRUE 0.910 103.000 0.448 1.000 N NA
 838940 838941 CPS_1133 CPS_1134 iscU   TRUE 0.990 12.000 0.359 0.001   NA
 838941 838942 CPS_1134 CPS_1135   hscB TRUE 0.886 184.000 0.500 1.000   NA
 838942 838943 CPS_1135 CPS_1136 hscB hscA TRUE 0.981 90.000 0.634 1.000 Y NA
 838943 838944 CPS_1136 CPS_1137 hscA   TRUE 0.985 69.000 0.794 1.000 N NA
 838944 838945 CPS_1137 CPS_1138     FALSE 0.041 420.000 0.000 1.000 N NA
 838945 838946 CPS_1138 CPS_1139     FALSE 0.155 402.000 0.000 0.018 Y NA
 838947 838948 CPS_1140 CPS_1141     TRUE 0.854 -3.000 0.000 NA   NA
 838948 838949 CPS_1141 CPS_1142   cobC TRUE 0.437 44.000 0.000 NA   NA
 838949 838950 CPS_1142 CPS_1143 cobC   TRUE 0.954 70.000 0.463 0.005 N NA
 838950 838951 CPS_1143 CPS_1144     FALSE 0.405 94.000 0.029 1.000 N NA
 838951 838952 CPS_1144 CPS_1145     FALSE 0.125 221.000 0.000 NA   NA
 838953 838954 CPS_1146 CPS_1147   cobB FALSE 0.146 135.000 0.000 NA   NA
 838954 838955 CPS_1147 CPS_1148 cobB cobO1 FALSE 0.220 424.000 0.054 0.005 Y NA
 838955 838956 CPS_1148 CPS_1149 cobO1   TRUE 0.800 -10.000 0.000 NA   NA
 838956 838957 CPS_1149 CPS_1150     FALSE 0.043 360.000 0.000 NA   NA
 838958 838959 CPS_1151 CPS_1152 metE   TRUE 0.970 92.000 0.775 NA   NA
 838961 838962 CPS_1154 CPS_1155     FALSE 0.027 492.000 0.000 1.000 N NA
 838964 838965 CPS_1157 CPS_1158     FALSE 0.256 82.000 0.000 NA   NA
 838965 838966 CPS_1158 CPS_1159     TRUE 0.857 3.000 0.000 NA   NA
 838966 838967 CPS_1159 CPS_1160     TRUE 0.998 -3.000 0.684 NA   NA
 838969 838970 CPS_1162 CPS_1163 btuB   FALSE 0.027 489.000 0.000 1.000 N NA
 838970 838971 CPS_1163 CPS_1164   cobO2 FALSE 0.386 82.000 0.014 1.000 N NA
 838971 838972 CPS_1164 CPS_1165 cobO2   TRUE 0.450 57.000 0.000 1.000 N NA
 838972 838973 CPS_1165 CPS_1166     TRUE 0.998 -7.000 0.500 1.000 Y NA
 838974 838975 CPS_1167 CPS_1168 bfr1 bfr2 TRUE 0.997 10.000 0.396 0.001 Y NA
 838976 838977 CPS_1169 CPS_1170   pepO FALSE 0.086 320.000 0.000 NA N NA
 838977 838978 CPS_1170 CPS_1171 pepO   FALSE 0.050 337.000 0.000 1.000   NA
 838979 838980 CPS_1172 CPS_1173     TRUE 0.954 218.000 0.800 1.000 N NA
 838981 838982 CPS_1174 CPS_1175     FALSE 0.299 66.000 0.007 0.067   NA
 838983 838984 CPS_1176 CPS_1177     FALSE 0.014 563.000 0.000 NA   NA
 838985 838986 CPS_1178 CPS_1179   rpsT FALSE 0.106 240.000 0.000 1.000   NA
 838987 838988 CPS_1180 CPS_1181 mviN ribF FALSE 0.220 417.000 0.169 1.000   NA
 838988 838989 CPS_1181 CPS_1182 ribF ileS TRUE 0.789 113.000 0.254 1.000 N NA
 838989 838990 CPS_1182 CPS_1183 ileS lspA TRUE 0.620 131.000 0.147 1.000 N NA
 838990 838991 CPS_1183 CPS_1184 lspA fkbP TRUE 0.935 81.000 0.417 1.000 N NA
 838991 838992 CPS_1184 CPS_1185 fkbP   TRUE 0.488 169.000 0.000 1.000 Y NA
 838992 838993 CPS_1185 CPS_1186     TRUE 0.423 39.000 0.000 0.038   NA
 838993 838994 CPS_1186 CPS_1187     TRUE 0.420 45.000 0.000 1.000   NA
 838997 838998 CPS_1190 CPS_1191     TRUE 0.831 9.000 0.000 NA   NA
 838999 839000 CPS_1192 CPS_1193   sohB TRUE 0.484 186.000 0.114 1.000   NA
 839005 839006 CPS_1198 CPS_1199     FALSE 0.353 59.000 0.000 NA   NA
 839008 839009 CPS_1201 CPS_1202   yegQ TRUE 0.807 40.000 0.093 1.000   NA
 839011 839012 CPS_1204 CPS_1205 rdgC   FALSE 0.077 334.000 0.000 1.000 N NA
 839015 839016 CPS_1208 CPS_1209 phoB phoR TRUE 0.988 39.000 0.453 1.000 Y NA
 839016 839017 CPS_1209 CPS_1210 phoR   TRUE 0.654 145.000 0.168 1.000 N NA
 839017 839018 CPS_1210 CPS_1211   ispH FALSE 0.176 216.000 0.000 1.000 N NA
 839018 839019 CPS_1211 CPS_1212 ispH   FALSE 0.388 53.000 0.000 NA   NA
 839019 839020 CPS_1212 CPS_1213   pilV FALSE 0.037 381.000 0.000 NA   NA
 839020 839021 CPS_1213 CPS_1214 pilV   TRUE 0.873 273.000 0.630 NA   NA
 839021 839022 CPS_1214 CPS_1215     TRUE 0.994 5.000 0.348 NA   NA
 839022 839023 CPS_1215 CPS_1216     TRUE 0.973 37.000 0.438 NA   NA
 839023 839024 CPS_1216 CPS_1217   pilE TRUE 0.995 0.000 0.200 1.000 Y NA
 839024 839025 CPS_1217 CPS_1218 pilE   TRUE 0.857 3.000 0.000 NA   NA
 839028 839029 CPS_1221 CPS_1222 pheA   FALSE 0.168 108.000 0.000 NA   NA
 839029 839030 CPS_1222 CPS_1223     FALSE 0.388 53.000 0.000 NA   NA
 839033 839034 CPS_1226 CPS_1227     FALSE 0.129 215.000 0.000 NA   NA
 839035 839036 CPS_1228 CPS_1229 glcB   FALSE 0.017 623.000 0.000 NA N NA
 839036 839037 CPS_1229 CPS_1230     TRUE 0.966 0.000 0.082 NA   NA
 839037 839038 CPS_1230 CPS_1231     TRUE 0.832 7.000 0.000 1.000   NA
 839040 839041 CPS_1233 CPS_1234     FALSE 0.310 294.000 0.000 NA Y NA
 839041 839042 CPS_1234 CPS_1235     TRUE 0.996 -3.000 0.449 NA N NA
 839042 839043 CPS_1235 CPS_1236     TRUE 0.544 43.000 0.000 NA N NA
 839044 839045 CPS_1237 CPS_1238     TRUE 0.643 42.000 0.035 NA   NA
 839045 839046 CPS_1238 CPS_1239     TRUE 0.500 51.000 0.000 NA N NA
 839047 839048 CPS_1240 CPS_1241 lysA   FALSE 0.192 100.000 0.000 NA   NA
 839052 839053 CPS_1245 CPS_1246     FALSE 0.335 63.000 0.000 NA   NA
 839055 839056 CPS_1248 CPS_1249     TRUE 0.998 0.000 0.671 0.097 N NA
 839056 839057 CPS_1249 CPS_1250     TRUE 0.999 -3.000 0.752 NA Y NA
 839057 839058 CPS_1250 CPS_1251     FALSE 0.205 136.000 0.000 NA N NA
 839058 839059 CPS_1251 CPS_1252     TRUE 0.821 103.000 0.263 NA N NA
 839059 839060 CPS_1252 CPS_1253   gshB TRUE 0.962 13.000 0.120 NA N NA
 839060 839061 CPS_1253 CPS_1254 gshB   TRUE 0.452 285.000 0.173 NA   NA
 839063 839064 CPS_1256 CPS_1257 metK murI FALSE 0.184 182.000 0.004 1.000 N NA
 839066 839067 CPS_1259 CPS_1260     FALSE 0.196 368.000 0.000 1.000 Y NA
 839067 839068 CPS_1260 CPS_1261     TRUE 0.991 16.000 0.263 0.031 Y NA
 839069 839070 CPS_1262 CPS_1263     FALSE 0.009 1059.000 0.000 NA   NA
 839070 839071 CPS_1263 CPS_1264     TRUE 0.544 31.000 0.000 NA   NA
 839071 839072 CPS_1264 CPS_1265     TRUE 0.790 358.000 0.400 NA Y NA
 839072 839073 CPS_1265 CPS_1266     TRUE 0.991 3.000 0.125 NA Y NA
 839073 839074 CPS_1266 CPS_1267     FALSE 0.193 178.000 0.000 1.000 N NA
 839076 839077 CPS_1269 CPS_1270     TRUE 0.807 11.000 0.000 NA   NA
 839077 839078 CPS_1270 CPS_1271   pepP FALSE 0.181 103.000 0.000 NA   NA
 839078 839079 CPS_1271 CPS_1272 pepP ubiH FALSE 0.189 187.000 0.000 1.000 N NA
 839079 839080 CPS_1272 CPS_1273 ubiH   TRUE 0.963 97.000 0.474 0.001 Y NA
 839080 839081 CPS_1273 CPS_1274   gcvT1 FALSE 0.016 621.000 0.004 1.000 N NA
 839081 839082 CPS_1274 CPS_1275 gcvT1 gcvH1 TRUE 0.905 132.000 0.317 0.003 Y NA
 839082 839083 CPS_1275 CPS_1276 gcvH1 gcvP1 TRUE 0.773 288.000 0.249 1.000 Y NA
 839083 839084 CPS_1276 CPS_1277 gcvP1   TRUE 0.422 236.000 0.000 1.000 Y NA
 839084 839085 CPS_1277 CPS_1278     FALSE 0.138 164.000 0.000 1.000   NA
 839085 839086 CPS_1278 CPS_1279     FALSE 0.009 775.000 0.000 NA   NA
 839087 839088 CPS_1280 CPS_1281     FALSE 0.321 66.000 0.000 NA   NA
 839091 839092 CPS_1284 CPS_1285     FALSE 0.134 203.000 0.000 NA   NA
 839092 839093 CPS_1285 CPS_1286     FALSE 0.056 331.000 0.000 NA   NA
 839094 839095 CPS_1287 CPS_1288     FALSE 0.010 664.000 0.000 1.000   NA
 839095 839096 CPS_1288 CPS_1289     FALSE 0.023 539.000 0.000 1.000 N NA
 839096 839097 CPS_1289 CPS_1290     TRUE 0.962 45.000 0.409 0.051   NA
 839097 839098 CPS_1290 CPS_1291     FALSE 0.139 152.000 0.000 1.000   NA
 839100 839101 CPS_1293 CPS_1294     FALSE 0.147 139.000 0.000 NA   NA
 839101 839102 CPS_1294 CPS_1295     FALSE 0.064 308.000 0.000 NA   NA
 839106 839107 CPS_1299 CPS_1300     FALSE 0.252 83.000 0.000 NA   NA
 839108 839109 CPS_1301 CPS_1302     FALSE 0.014 566.000 0.000 NA   NA
 839113 839114 CPS_1306 CPS_1307     TRUE 0.937 10.000 0.057 NA   NA
 839115 839116 CPS_1308 CPS_1309     TRUE 0.430 45.000 0.000 NA   NA
 839116 839117 CPS_1309 CPS_1310     FALSE 0.134 204.000 0.000 NA   NA
 839119 839120 CPS_1312 CPS_1313 argJ dnaK1 FALSE 0.017 609.000 0.000 1.000 N NA
 839120 839121 CPS_1313 CPS_1314 dnaK1   TRUE 0.430 45.000 0.000 NA   NA
 839123 839124 CPS_1316 CPS_1317     FALSE 0.339 81.000 0.000 1.000 N NA
 839126 839127 CPS_1319 CPS_1320     TRUE 0.854 -3.000 0.000 NA   NA
 839128 839129 CPS_1321 CPS_1322     TRUE 0.957 57.000 0.444 1.000   NA
 839134 839135 CPS_1327 CPS_1328     FALSE 0.143 155.000 0.000 NA   NA
 839135 839136 CPS_1328 CPS_1329     FALSE 0.318 67.000 0.000 NA   NA
 839136 839137 CPS_1329 CPS_1330     FALSE 0.133 207.000 0.000 NA   NA
 839137 839138 CPS_1330 CPS_1331     FALSE 0.150 127.000 0.000 NA   NA
 839139 839140 CPS_1332 CPS_1333 betI1 betB1 TRUE 0.995 -9.000 0.459 1.000 N NA
 839140 839141 CPS_1333 CPS_1334 betB1 betA1 TRUE 0.936 130.000 0.634 1.000 N NA
 839141 839142 CPS_1334 CPS_1335 betA1   FALSE 0.216 239.000 0.024 1.000 N NA
 839142 839143 CPS_1335 CPS_1336     TRUE 0.960 37.000 0.333 NA   NA
 839143 839144 CPS_1336 CPS_1337     TRUE 0.665 50.000 0.049 NA   NA
 839144 839145 CPS_1337 CPS_1338     FALSE 0.144 247.000 0.000 1.000 N NA
 839145 839146 CPS_1338 CPS_1339     FALSE 0.080 277.000 0.000 1.000   NA
 839146 839147 CPS_1339 CPS_1340     FALSE 0.178 104.000 0.000 NA   NA
 839147 839148 CPS_1340 CPS_1341     FALSE 0.146 146.000 0.000 NA   NA
 839148 839149 CPS_1341 CPS_1342     TRUE 0.993 46.000 1.000 NA   NA
 839150 839151 CPS_1343 CPS_1344   katG TRUE 0.510 145.000 0.014 0.012 Y NA
 839152 839153 CPS_1345 CPS_1346     FALSE 0.148 130.000 0.000 NA   NA
 839153 839154 CPS_1346 CPS_1347     FALSE 0.036 442.000 0.000 1.000 N NA
 839155 839156 CPS_1348 CPS_1349     FALSE 0.044 353.000 0.000 1.000   NA
 839156 839157 CPS_1349 CPS_1350     FALSE 0.405 50.000 0.000 NA   NA
 839157 839158 CPS_1350 CPS_1351     FALSE 0.279 77.000 0.000 NA   NA
 839159 839160 CPS_1352 CPS_1353     FALSE 0.017 518.000 0.000 NA   NA
 839160 839161 CPS_1353 CPS_1354     FALSE 0.015 554.000 0.000 NA   NA
 839162 839163 CPS_1355 CPS_1356     TRUE 0.999 12.000 0.945 1.000 N NA
 839164 839165 CPS_1357 CPS_1358     FALSE 0.150 127.000 0.000 NA   NA
 839165 839166 CPS_1358 CPS_1359   add1 FALSE 0.081 327.000 0.000 1.000 N NA
 839167 839168 CPS_1360 CPS_1361     TRUE 0.466 39.000 0.000 NA   NA
 839168 839169 CPS_1361 CPS_1362     FALSE 0.178 104.000 0.000 NA   NA
 839169 839170 CPS_1362 CPS_1363     FALSE 0.151 125.000 0.000 NA   NA
 839171 839172 CPS_1364 CPS_1365     FALSE 0.135 201.000 0.000 NA   NA
 839172 839173 CPS_1365 CPS_1366     FALSE 0.024 442.000 0.000 1.000   NA
 839173 839174 CPS_1366 CPS_1367     FALSE 0.038 378.000 0.000 NA   NA
 839174 839175 CPS_1367 CPS_1368     FALSE 0.155 119.000 0.000 NA   NA
 839175 839176 CPS_1368 CPS_1369     TRUE 0.697 -118.000 0.000 NA   NA
 839176 839177 CPS_1369 CPS_1370     TRUE 0.700 -103.000 0.000 NA   NA
 839179 839180 CPS_1372 CPS_1373     TRUE 0.994 -7.000 0.387 NA   NA
 839180 839181 CPS_1373 CPS_1374     TRUE 0.994 -7.000 0.395 NA   NA
 839181 839182 CPS_1374 CPS_1375     FALSE 0.026 435.000 0.000 NA   NA
 839182 839183 CPS_1375 CPS_1376     FALSE 0.022 458.000 0.000 1.000   NA
 839183 839184 CPS_1376 CPS_1377     FALSE 0.406 139.000 0.077 1.000   NA
 839184 839185 CPS_1377 CPS_1378     TRUE 0.999 -7.000 0.898 NA N NA
 839185 839186 CPS_1378 CPS_1379     TRUE 0.699 67.000 0.092 NA   NA
 839186 839187 CPS_1379 CPS_1380   phrB FALSE 0.331 110.000 0.042 NA   NA
 839187 839188 CPS_1380 CPS_1381 phrB   FALSE 0.352 113.000 0.048 NA   NA
 839188 839189 CPS_1381 CPS_1382     TRUE 0.997 0.000 0.533 NA   NA
 839189 839190 CPS_1382 CPS_1383     TRUE 0.987 -3.000 0.217 0.034   NA
 839190 839191 CPS_1383 CPS_1384     TRUE 0.997 -13.000 0.722 NA   NA
 839191 839192 CPS_1384 CPS_1385   cfa TRUE 0.815 112.000 0.311 NA   NA
 839194 839195 CPS_1387 CPS_1388   phoP TRUE 0.985 28.000 0.500 1.000   NA
 839195 839196 CPS_1388 CPS_1389 phoP phoQ TRUE 0.994 27.000 0.476 1.000 Y NA
 839197 839198 CPS_1390 CPS_1391     FALSE 0.223 91.000 0.000 NA   NA
 839199 839200 CPS_1392 CPS_1393     FALSE 0.184 102.000 0.000 NA   NA
 839204 839205 CPS_1397 CPS_1398     FALSE 0.064 309.000 0.000 NA   NA
 839205 839206 CPS_1398 CPS_1399     TRUE 0.761 -19.000 0.000 NA   NA
 839206 839207 CPS_1399 CPS_1400     FALSE 0.147 131.000 0.000 NA   NA
 839208 839209 CPS_1401 CPS_1402     FALSE 0.143 159.000 0.000 NA   NA
 839209 839210 CPS_1402 CPS_1403     TRUE 0.999 -3.000 0.827 NA Y NA
 839210 839211 CPS_1403 CPS_1404     TRUE 0.530 111.000 0.000 NA Y NA
 839212 839213 CPS_1405 CPS_1406     TRUE 0.996 -3.000 0.263 0.030 Y NA
 839217 839218 CPS_1410 CPS_1411     FALSE 0.160 237.000 0.000 NA N NA
 839223 839224 CPS_1416 CPS_1417     FALSE 0.090 265.000 0.000 NA   NA
 839229 839230 CPS_1422 CPS_1423     FALSE 0.028 423.000 0.000 NA   NA
 839230 839231 CPS_1423 CPS_1424     TRUE 0.769 13.000 0.000 NA   NA
 839231 839232 CPS_1424 CPS_1425     TRUE 0.772 -15.000 0.000 NA   NA
 839232 839233 CPS_1425 CPS_1426   rstA TRUE 0.769 13.000 0.000 NA   NA
 839233 839234 CPS_1426 CPS_1427 rstA rstB TRUE 0.996 62.000 1.000 1.000 Y NA
 839236 839237 CPS_1429 CPS_1430     FALSE 0.400 143.000 0.059 0.065 N NA
 839237 839238 CPS_1430 CPS_1431     TRUE 0.985 86.000 1.000 0.065 N NA
 839238 839239 CPS_1431 CPS_1432   mmsA2 TRUE 0.996 55.000 1.000 1.000 Y NA
 839239 839240 CPS_1432 CPS_1433 mmsA2   FALSE 0.195 168.000 0.000 1.000 N NA
 839243 839244 CPS_1436 CPS_1437 creA   FALSE 0.053 335.000 0.000 NA   NA
 839245 839246 CPS_1438 CPS_1439     FALSE 0.042 415.000 0.000 1.000 N NA
 839248 839249 CPS_1441 CPS_1442     TRUE 0.518 33.000 0.000 NA   NA
 839250 839251 CPS_1443 CPS_1444     TRUE 0.985 5.000 0.200 NA   NA
 839251 839252 CPS_1444 CPS_1445     TRUE 0.772 108.000 0.250 NA   NA
 839255 839256 CPS_1448 CPS_1449     FALSE 0.056 329.000 0.000 NA   NA
 839256 839257 CPS_1449 CPS_1450     TRUE 0.772 193.000 0.142 NA Y NA
 839257 839258 CPS_1450 CPS_1451   aldH TRUE 0.672 188.000 0.186 NA N NA
 839258 839259 CPS_1451 CPS_1452 aldH   FALSE 0.144 127.000 0.000 1.000   NA
 839259 839260 CPS_1452 CPS_1453     FALSE 0.290 73.000 0.000 1.000   NA
 839260 839261 CPS_1453 CPS_1454     TRUE 0.788 52.000 0.000 1.000 Y NA
 839261 839262 CPS_1454 CPS_1455     FALSE 0.264 320.000 0.000 1.000 Y NA
 839265 839266 CPS_1458 CPS_1459     FALSE 0.100 233.000 0.000 0.037   NA
 839271 839272 CPS_1464 CPS_1465   yeiP FALSE 0.012 609.000 0.000 NA   NA
 839276 839277 CPS_1469 CPS_1470     TRUE 0.849 85.000 0.260 NA   NA
 839278 839279 CPS_1471 CPS_1472   flgM TRUE 0.681 49.000 0.062 0.002   NA
 839279 839280 CPS_1472 CPS_1473 flgM   TRUE 0.835 168.000 0.371 NA   NA
 839281 839282 CPS_1474 CPS_1475 cheV   FALSE 0.153 122.000 0.000 NA   NA
 839282 839283 CPS_1475 CPS_1476   cheR FALSE 0.158 116.000 0.000 NA   NA
 839283 839284 CPS_1476 CPS_1477 cheR flgB TRUE 0.904 152.000 0.309 1.000 Y NA
 839284 839285 CPS_1477 CPS_1478 flgB flgC TRUE 1.000 3.000 0.889 0.003 Y NA
 839285 839286 CPS_1478 CPS_1479 flgC flgD TRUE 0.949 143.000 0.478 NA Y NA
 839286 839287 CPS_1479 CPS_1480 flgD flgE TRUE 0.971 106.000 0.875 NA   NA
 839287 839288 CPS_1480 CPS_1481 flgE flgF TRUE 0.897 223.000 0.594 0.003   NA
 839288 839289 CPS_1481 CPS_1482 flgF flgG TRUE 0.971 79.000 0.446 0.001 Y NA
 839289 839290 CPS_1482 CPS_1483 flgG flgH TRUE 0.997 36.000 0.909 0.005 Y NA
 839290 839291 CPS_1483 CPS_1484 flgH flgI TRUE 0.958 100.000 0.457 0.007 Y NA
 839291 839292 CPS_1484 CPS_1485 flgI flgJ TRUE 0.702 420.000 0.405 0.007 Y NA
 839292 839293 CPS_1485 CPS_1486 flgJ   TRUE 0.971 191.000 0.705 0.002 Y NA
 839293 839294 CPS_1486 CPS_1487   flgL TRUE 0.991 11.000 0.182 0.001 Y NA
 839294 839295 CPS_1487 CPS_1488 flgL   FALSE 0.372 251.000 0.000 0.001 Y NA
 839295 839296 CPS_1488 CPS_1489     FALSE 0.069 346.000 0.000 1.000 N NA
 839296 839297 CPS_1489 CPS_1490     FALSE 0.016 657.000 0.000 1.000 N NA
 839297 839298 CPS_1490 CPS_1491   flaG TRUE 0.498 191.000 0.011 NA Y NA
 839298 839299 CPS_1491 CPS_1492 flaG fliD TRUE 0.879 75.000 0.117 NA Y NA
 839299 839300 CPS_1492 CPS_1493 fliD   FALSE 0.143 162.000 0.000 NA   NA
 839301 839302 CPS_1494 CPS_1495     FALSE 0.329 64.000 0.000 NA   NA
 839302 839303 CPS_1495 CPS_1496   fliS TRUE 0.867 0.000 0.000 NA   NA
 839303 839304 CPS_1496 CPS_1497 fliS   FALSE 0.170 107.000 0.000 NA   NA
 839305 839306 CPS_1498 CPS_1499 flrA flrB TRUE 0.925 166.000 0.377 0.094 Y NA
 839306 839307 CPS_1499 CPS_1500 flrB flrC TRUE 0.999 -7.000 0.679 0.094 Y NA
 839307 839308 CPS_1500 CPS_1501 flrC fliE TRUE 0.873 211.000 0.446 1.000 N NA
 839308 839309 CPS_1501 CPS_1502 fliE fliF TRUE 0.980 234.000 0.910 0.005 Y NA
 839309 839310 CPS_1502 CPS_1503 fliF fliG TRUE 0.993 -7.000 0.189 0.005 Y NA
 839310 839311 CPS_1503 CPS_1504 fliG fliH TRUE 0.982 36.000 0.320 0.003 Y NA
 839311 839312 CPS_1504 CPS_1505 fliH fliI TRUE 0.947 69.000 0.248 0.003 Y NA
 839312 839313 CPS_1505 CPS_1506 fliI   TRUE 0.883 76.000 0.127 0.007 Y NA
 839313 839314 CPS_1506 CPS_1507     TRUE 0.787 177.000 0.317 0.005   NA
 839314 839315 CPS_1507 CPS_1508   fliL TRUE 0.641 141.000 0.182 1.000   NA
 839315 839316 CPS_1508 CPS_1509 fliL fliM TRUE 0.941 74.000 0.241 0.001 Y NA
 839316 839317 CPS_1509 CPS_1510 fliM fliN TRUE 0.995 42.000 0.741 0.001 Y NA
 839317 839318 CPS_1510 CPS_1511 fliN fliO TRUE 0.987 44.000 0.443 1.000 Y NA
 839318 839319 CPS_1511 CPS_1512 fliO fliP TRUE 0.838 92.000 0.122 1.000 Y NA
 839319 839320 CPS_1512 CPS_1513 fliP fliQ TRUE 0.990 64.000 0.702 0.012 Y NA
 839320 839321 CPS_1513 CPS_1514 fliQ fliR TRUE 0.995 38.000 0.719 0.002 Y NA
 839321 839322 CPS_1514 CPS_1515 fliR flhB TRUE 0.996 1.000 0.240 1.000 Y NA
 839322 839323 CPS_1515 CPS_1516 flhB flhA TRUE 0.844 147.000 0.205 0.012 Y NA
 839323 839324 CPS_1516 CPS_1517 flhA flhF TRUE 0.936 60.000 0.178 1.000 Y NA
 839324 839325 CPS_1517 CPS_1518 flhF flhG TRUE 0.927 47.000 0.241 0.015 N NA
 839325 839326 CPS_1518 CPS_1519 flhG fliA TRUE 0.978 40.000 0.482 1.000 N NA
 839326 839327 CPS_1519 CPS_1520 fliA cheY TRUE 0.814 108.000 0.283 0.093 N NA
 839327 839328 CPS_1520 CPS_1521 cheY cheZ TRUE 0.975 87.000 0.516 1.000 Y NA
 839328 839329 CPS_1521 CPS_1522 cheZ cheA TRUE 0.995 14.000 0.341 1.000 Y NA
 839329 839330 CPS_1522 CPS_1523 cheA cheB TRUE 0.950 84.000 0.327 0.010 Y NA
 839330 839331 CPS_1523 CPS_1524 cheB motA TRUE 0.991 -7.000 0.153 1.000 Y NA
 839331 839332 CPS_1524 CPS_1525 motA   TRUE 0.996 -3.000 0.248 0.058 Y NA
 839332 839333 CPS_1525 CPS_1526     TRUE 0.800 91.000 0.199 1.000 N NA
 839333 839334 CPS_1526 CPS_1527     TRUE 0.980 34.000 0.454 1.000 N NA
 839334 839335 CPS_1527 CPS_1528     TRUE 0.995 61.000 0.886 0.010 Y NA
 839335 839336 CPS_1528 CPS_1529     TRUE 0.949 125.000 0.743 NA   NA
 839336 839337 CPS_1529 CPS_1530     FALSE 0.145 150.000 0.000 NA   NA
 839337 839338 CPS_1530 CPS_1531   ribE2 FALSE 0.325 85.000 0.000 NA N NA
 839338 839339 CPS_1531 CPS_1532 ribE2 nusB TRUE 0.973 32.000 0.347 1.000 N NA
 839339 839340 CPS_1532 CPS_1533 nusB thiL TRUE 0.936 39.000 0.225 1.000 N NA
 839340 839341 CPS_1533 CPS_1534 thiL pgpA TRUE 0.918 45.000 0.206 1.000 N NA
 839341 839342 CPS_1534 CPS_1535 pgpA yfiA2 FALSE 0.045 410.000 0.000 NA N NA
 839342 839343 CPS_1535 CPS_1536 yfiA2   FALSE 0.038 439.000 0.000 NA N NA
 839343 839344 CPS_1536 CPS_1537     TRUE 0.981 15.000 0.250 1.000 N NA
 839345 839346 CPS_1538 CPS_1539     TRUE 0.416 48.000 0.000 NA   NA
 839347 839348 CPS_1540 CPS_1541 dbpA   FALSE 0.175 105.000 0.000 NA   NA
 839348 839349 CPS_1541 CPS_1542     FALSE 0.015 552.000 0.000 NA   NA
 839349 839350 CPS_1542 CPS_1543     FALSE 0.181 103.000 0.000 NA   NA
 839351 839352 CPS_1544 CPS_1545 serA rpiA FALSE 0.287 182.000 0.029 1.000 N NA
 839352 839353 CPS_1545 CPS_1546 rpiA   FALSE 0.143 170.000 0.000 NA   NA
 839353 839354 CPS_1546 CPS_1547     FALSE 0.066 303.000 0.000 NA   NA
 839354 839355 CPS_1547 CPS_1548   dapD FALSE 0.092 263.000 0.000 NA   NA
 839355 839356 CPS_1548 CPS_1549 dapD glnD FALSE 0.373 77.000 0.007 1.000 N NA
 839356 839357 CPS_1549 CPS_1550 glnD map FALSE 0.338 109.000 0.030 1.000 N NA
 839360 839361 CPS_1553 CPS_1554 rpsB tsf TRUE 0.977 135.000 0.748 1.000 Y NA
 839361 839362 CPS_1554 CPS_1555 tsf pyrH TRUE 0.420 513.000 0.416 1.000 N NA
 839362 839363 CPS_1555 CPS_1556 pyrH frr TRUE 0.970 77.000 0.626 1.000 N NA
 839363 839364 CPS_1556 CPS_1557 frr uppS TRUE 0.888 109.000 0.409 1.000 N NA
 839364 839365 CPS_1557 CPS_1558 uppS cdsA TRUE 0.950 101.000 0.400 1.000 Y NA
 839365 839366 CPS_1558 CPS_1559 cdsA dxr TRUE 0.981 49.000 0.372 1.000 Y NA
 839366 839367 CPS_1559 CPS_1560 dxr ecfE TRUE 0.998 2.000 0.568 1.000 N NA
 839367 839368 CPS_1560 CPS_1561 ecfE   FALSE 0.316 326.000 0.026 1.000 Y NA
 839368 839369 CPS_1561 CPS_1562     TRUE 0.764 109.000 0.104 1.000 Y NA
 839369 839370 CPS_1562 CPS_1563   lpxD TRUE 0.994 59.000 0.814 1.000 Y NA
 839370 839371 CPS_1563 CPS_1564 lpxD fabZ TRUE 0.961 131.000 0.796 1.000 N NA
 839371 839372 CPS_1564 CPS_1565 fabZ lpxA TRUE 0.989 62.000 0.850 1.000 N NA
 839372 839373 CPS_1565 CPS_1566 lpxA   TRUE 0.671 19.000 0.000 NA   NA
 839375 839376 CPS_1568 CPS_1569 lpxB rnhB TRUE 0.906 45.000 0.186 1.000 N NA
 839376 839377 CPS_1569 CPS_1570 rnhB dnaE TRUE 0.990 2.000 0.104 1.000 Y NA
 839377 839378 CPS_1570 CPS_1571 dnaE accA TRUE 0.569 137.000 0.122 1.000 N NA
 839378 839379 CPS_1571 CPS_1572 accA tilS TRUE 0.861 43.000 0.123 1.000 N NA
 839382 839383 CPS_1575 CPS_1576 fur   TRUE 0.625 174.000 0.156 1.000 N NA
 839383 839384 CPS_1576 CPS_1577     TRUE 0.984 28.000 0.473 1.000   NA
 839384 839385 CPS_1577 CPS_1578     TRUE 0.991 4.000 0.282 NA   NA
 839385 839386 CPS_1578 CPS_1579     FALSE 0.270 200.000 0.038 NA   NA
 839387 839388 CPS_1580 CPS_1581 seqA pgm TRUE 0.855 54.000 0.151 1.000 N NA
 839388 839389 CPS_1581 CPS_1582 pgm   FALSE 0.051 390.000 0.000 1.000 N NA
 839389 839390 CPS_1582 CPS_1583     TRUE 0.927 270.000 0.558 0.001 Y NA
 839390 839391 CPS_1583 CPS_1584     TRUE 0.973 30.000 0.188 0.065 Y NA
 839393 839394 CPS_1586 CPS_1587     FALSE 0.388 53.000 0.000 NA   NA
 839395 839396 CPS_1588 CPS_1589     TRUE 0.671 19.000 0.000 NA   NA
 839397 839398 CPS_1590 CPS_1591     TRUE 0.443 43.000 0.000 NA   NA
 839403 839404 CPS_1596 CPS_1597   dxnH FALSE 0.056 331.000 0.000 NA   NA
 839404 839405 CPS_1597 CPS_1598 dxnH dxnG TRUE 0.998 0.000 0.352 0.001 Y NA
 839405 839406 CPS_1598 CPS_1599 dxnG mvaB TRUE 0.567 120.000 0.120 0.065 N NA
 839406 839407 CPS_1599 CPS_1600 mvaB mccA TRUE 0.990 3.000 0.229 0.065 N NA
 839407 839408 CPS_1600 CPS_1601 mccA   TRUE 0.936 68.000 0.205 0.065 Y NA
 839408 839409 CPS_1601 CPS_1602   mccB TRUE 0.826 195.000 0.189 1.000 Y NA
 839409 839410 CPS_1602 CPS_1603 mccB ivd TRUE 0.768 334.000 0.316 1.000 Y NA
 839410 839411 CPS_1603 CPS_1604 ivd   TRUE 0.693 105.000 0.166 1.000 N NA
 839414 839415 CPS_1607 CPS_1608     TRUE 0.473 180.000 0.000 0.065 Y NA
 839415 839416 CPS_1608 CPS_1609   rrsH FALSE 0.010 715.000 0.000 NA   NA
 839416 839417 CPS_1609 CPS_1610 rrsH   FALSE 0.199 98.000 0.000 NA   NA
 839417 839418 CPS_1610 CPS_1611   rrlH FALSE 0.021 467.000 0.000 NA   NA
 839418 839419 CPS_1611 CPS_1612 rrlH rrfH FALSE 0.144 152.000 0.000 NA   NA
 839422 839423 CPS_1615 CPS_1616     FALSE 0.279 77.000 0.000 NA   NA
 839424 839425 CPS_1617 CPS_1618     FALSE 0.014 534.000 0.000 0.019   NA
 839427 839428 CPS_1620 CPS_1621     TRUE 0.474 179.000 0.000 0.092 Y NA
 839428 839429 CPS_1621 CPS_1622     TRUE 0.485 145.000 0.000 0.092 Y NA
 839431 839432 CPS_1624 CPS_1625     FALSE 0.148 130.000 0.000 NA   NA
 839433 839434 CPS_1626 CPS_1627     FALSE 0.143 165.000 0.000 NA   NA
 839436 839437 CPS_1629 CPS_1630     TRUE 0.693 -217.000 0.000 NA   NA
 839437 839438 CPS_1630 CPS_1631     TRUE 0.753 -19.000 0.000 1.000   NA
 839438 839439 CPS_1631 CPS_1632     TRUE 0.867 0.000 0.000 NA   NA
 839442 839443 CPS_1635 CPS_1636 umuD1 umuC1 TRUE 0.788 -12.000 0.000 NA   NA
 839443 839444 CPS_1636 CPS_1637 umuC1   FALSE 0.031 465.000 0.000 1.000 N NA
 839446 839447 CPS_1639 CPS_1640     FALSE 0.155 120.000 0.000 NA   NA
 839447 839448 CPS_1640 CPS_1641     FALSE 0.130 198.000 0.000 1.000   NA
 839448 839449 CPS_1641 CPS_1642     FALSE 0.147 140.000 0.000 NA   NA
 839449 839450 CPS_1642 CPS_1643     FALSE 0.310 69.000 0.000 NA   NA
 839452 839453 CPS_1645 CPS_1646     FALSE 0.090 266.000 0.000 NA   NA
 839453 839454 CPS_1646 CPS_1647     FALSE 0.034 396.000 0.000 NA   NA
 839454 839455 CPS_1647 CPS_1648     FALSE 0.162 111.000 0.000 NA   NA
 839455 839456 CPS_1648 CPS_1649     FALSE 0.150 127.000 0.000 NA   NA
 839456 839457 CPS_1649 CPS_1650     FALSE 0.133 206.000 0.000 NA   NA
 839457 839458 CPS_1650 CPS_1651     FALSE 0.035 395.000 0.000 NA   NA
 839458 839459 CPS_1651 CPS_1652     TRUE 0.776 108.000 0.259 1.000   NA
 839459 839460 CPS_1652 CPS_1653     TRUE 0.956 65.000 0.483 NA   NA
 839460 839461 CPS_1653 CPS_1654     TRUE 0.998 5.000 0.724 NA   NA
 839462 839463 CPS_1655 CPS_1656     TRUE 0.979 18.000 0.278 NA N NA
 839464 839465 CPS_1657 CPS_1658     FALSE 0.374 396.000 0.250 NA   NA
 839468 839469 CPS_1661 CPS_1662     FALSE 0.155 120.000 0.000 NA   NA
 839470 839471 CPS_1663 CPS_1664     TRUE 0.458 40.000 0.000 NA   NA
 839472 839473 CPS_1665 CPS_1666     FALSE 0.037 383.000 0.000 NA   NA
 839473 839474 CPS_1666 CPS_1667     FALSE 0.070 275.000 0.000 0.011   NA
 839474 839475 CPS_1667 CPS_1668     TRUE 0.531 32.000 0.000 NA   NA
 839475 839476 CPS_1668 CPS_1669     FALSE 0.306 70.000 0.000 NA   NA
 839478 839479 CPS_1671 CPS_1672     FALSE 0.010 725.000 0.000 NA   NA
 839480 839481 CPS_1673 CPS_1674     FALSE 0.367 56.000 0.000 NA   NA
 839482 839483 CPS_1675 CPS_1676     TRUE 0.768 -16.000 0.000 NA   NA
 839483 839484 CPS_1676 CPS_1677     TRUE 0.754 -22.000 0.000 NA   NA
 839484 839485 CPS_1677 CPS_1678     FALSE 0.141 179.000 0.000 NA   NA
 839485 839486 CPS_1678 CPS_1679   acpD1 FALSE 0.258 101.000 0.000 NA N NA
 839486 839487 CPS_1679 CPS_1680 acpD1   TRUE 0.623 88.000 0.000 0.033 Y NA
 839488 839489 CPS_1681 CPS_1682     FALSE 0.045 357.000 0.000 NA   NA
 839491 839492 CPS_1684 CPS_1685     FALSE 0.294 74.000 0.000 NA   NA
 839492 839493 CPS_1685 CPS_1686     TRUE 0.989 -69.000 0.429 0.049   NA
 839493 839494 CPS_1686 CPS_1687     FALSE 0.150 127.000 0.000 NA   NA
 839494 839495 CPS_1687 CPS_1688     FALSE 0.146 137.000 0.000 NA   NA
 839495 839496 CPS_1688 CPS_1689     FALSE 0.170 107.000 0.000 NA   NA
 839496 839497 CPS_1689 CPS_1690     FALSE 0.133 207.000 0.000 NA   NA
 839497 839498 CPS_1690 CPS_1691     FALSE 0.013 584.000 0.000 NA   NA
 839498 839499 CPS_1691 CPS_1692     FALSE 0.035 393.000 0.000 NA   NA
 839499 839500 CPS_1692 CPS_1693     FALSE 0.152 124.000 0.000 NA   NA
 839500 839501 CPS_1693 CPS_1694     TRUE 0.544 149.000 0.113 1.000 N NA
 839501 839502 CPS_1694 CPS_1695     FALSE 0.256 82.000 0.000 NA   NA
 839502 839503 CPS_1695 CPS_1696     FALSE 0.318 67.000 0.000 NA   NA
 839503 839504 CPS_1696 CPS_1697     FALSE 0.143 166.000 0.000 NA   NA
 839505 839506 CPS_1698 CPS_1699     FALSE 0.209 95.000 0.000 NA   NA
 839506 839507 CPS_1699 CPS_1700     FALSE 0.279 77.000 0.000 NA   NA
 839507 839508 CPS_1700 CPS_1701   rnhA FALSE 0.220 111.000 0.000 1.000 N NA
 839508 839509 CPS_1701 CPS_1702 rnhA   FALSE 0.034 396.000 0.000 NA   NA
 839510 839511 CPS_1703 CPS_1704     FALSE 0.206 94.000 0.000 1.000   NA
 839513 839514 CPS_1706 CPS_1707     TRUE 0.478 158.000 0.000 0.092 Y NA
 839515 839516 CPS_1708 CPS_1709   lipA FALSE 0.014 772.000 0.000 1.000 N NA
 839516 839517 CPS_1709 CPS_1710 lipA lipB TRUE 0.996 -7.000 0.319 0.001 Y NA
 839517 839518 CPS_1710 CPS_1711 lipB   TRUE 0.899 53.000 0.219 NA   NA
 839518 839519 CPS_1711 CPS_1712   dacA FALSE 0.217 154.000 0.024 NA   NA
 839519 839520 CPS_1712 CPS_1713 dacA   TRUE 0.680 197.000 0.080 NA Y NA
 839520 839521 CPS_1713 CPS_1714   rodA TRUE 0.587 72.000 0.043 NA N NA
 839521 839522 CPS_1714 CPS_1715 rodA   TRUE 0.920 0.000 0.013 1.000 N NA
 839522 839523 CPS_1715 CPS_1716     FALSE 0.398 60.000 0.012 NA   NA
 839523 839524 CPS_1716 CPS_1717     TRUE 0.770 211.000 0.307 NA   NA
 839524 839525 CPS_1717 CPS_1718   nadD FALSE 0.352 95.000 0.032 NA   NA
 839527 839528 CPS_1720 CPS_1721 holA   TRUE 0.830 82.000 0.199 NA N NA
 839528 839529 CPS_1721 CPS_1722   leuS TRUE 0.937 31.000 0.182 NA N NA
 839530 839531 CPS_1723 CPS_1724     FALSE 0.262 158.000 0.033 NA   NA
 839531 839532 CPS_1724 CPS_1725     FALSE 0.335 63.000 0.000 NA   NA
 839532 839533 CPS_1725 CPS_1726   deaD FALSE 0.028 423.000 0.000 NA   NA
 839533 839534 CPS_1726 CPS_1727 deaD   FALSE 0.111 234.000 0.000 1.000   NA
 839534 839535 CPS_1727 CPS_1728   tolQ TRUE 0.996 -10.000 0.593 1.000   NA
 839535 839536 CPS_1728 CPS_1729 tolQ tolR TRUE 0.998 10.000 0.556 0.056 Y NA
 839536 839537 CPS_1729 CPS_1730 tolR   TRUE 0.934 32.000 0.183 NA N NA
 839537 839538 CPS_1730 CPS_1731   tolB TRUE 0.500 132.000 0.089 NA N NA
 839538 839539 CPS_1731 CPS_1732 tolB pal TRUE 0.973 64.000 0.592 1.000 N NA
 839539 839540 CPS_1732 CPS_1733 pal   TRUE 0.919 54.000 0.278 1.000   NA
 839540 839541 CPS_1733 CPS_1734     FALSE 0.143 173.000 0.000 NA   NA
 839541 839542 CPS_1734 CPS_1735     FALSE 0.164 110.000 0.000 NA   NA
 839542 839543 CPS_1735 CPS_1736     TRUE 0.482 37.000 0.000 NA   NA
 839543 839544 CPS_1736 CPS_1737     FALSE 0.213 94.000 0.000 NA   NA
 839544 839545 CPS_1737 CPS_1738     TRUE 0.507 34.000 0.000 NA   NA
 839545 839546 CPS_1738 CPS_1739     FALSE 0.143 168.000 0.000 NA   NA
 839546 839547 CPS_1739 CPS_1740   nadA FALSE 0.027 426.000 0.000 NA   NA
 839549 839550 CPS_1742 CPS_1743     FALSE 0.058 326.000 0.000 NA   NA
 839555 839556 CPS_1748 CPS_1749   cpxA FALSE 0.031 404.000 0.000 1.000   NA
 839556 839557 CPS_1749 CPS_1750 cpxA cpxR TRUE 0.999 3.000 0.791 1.000 Y NA
 839559 839560 CPS_1752 CPS_1753 hpt   FALSE 0.145 126.000 0.000 1.000   NA
 839563 839564 CPS_1756 CPS_1757     FALSE 0.043 355.000 0.000 1.000   NA
 839564 839565 CPS_1757 CPS_1758     FALSE 0.175 105.000 0.000 NA   NA
 839565 839566 CPS_1758 CPS_1759     TRUE 0.475 38.000 0.000 NA   NA
 839568 839569 CPS_1761 CPS_1762     TRUE 0.430 45.000 0.000 NA   NA
 839569 839570 CPS_1762 CPS_1763     FALSE 0.146 135.000 0.000 NA   NA
 839570 839571 CPS_1763 CPS_1764     TRUE 0.791 19.000 0.028 NA   NA
 839571 839572 CPS_1764 CPS_1765     TRUE 0.442 41.000 0.000 1.000   NA
 839572 839573 CPS_1765 CPS_1766     FALSE 0.159 115.000 0.000 NA   NA
 839573 839574 CPS_1766 CPS_1767     FALSE 0.279 77.000 0.000 NA   NA
 839574 839575 CPS_1767 CPS_1768     FALSE 0.090 267.000 0.000 NA   NA
 839577 839578 CPS_1770 CPS_1771     FALSE 0.170 107.000 0.000 NA   NA
 839578 839579 CPS_1771 CPS_1772     FALSE 0.147 141.000 0.000 NA   NA
 839581 839582 CPS_1774 CPS_1775     FALSE 0.373 55.000 0.000 NA   NA
 839582 839583 CPS_1775 CPS_1776     FALSE 0.125 221.000 0.000 NA   NA
 839583 839584 CPS_1776 CPS_1777     FALSE 0.153 122.000 0.000 NA   NA
 839585 839586 CPS_1778 CPS_1779 nemA   TRUE 0.998 -3.000 0.667 NA   NA
 839587 839588 CPS_1780 CPS_1781     FALSE 0.037 377.000 0.000 1.000   NA
 839590 839591 CPS_1783 CPS_1784 pntA pntB1 TRUE 0.999 10.000 0.745 0.001 Y NA
 839591 839592 CPS_1784 CPS_1785 pntB1   FALSE 0.012 607.000 0.000 NA   NA
 839594 839595 CPS_1787 CPS_1788     FALSE 0.174 195.000 0.000 0.063 N NA
 839596 839597 CPS_1789 CPS_1790     FALSE 0.360 57.000 0.000 NA   NA
 839597 839598 CPS_1790 CPS_1791     TRUE 0.544 31.000 0.000 NA   NA
 839598 839599 CPS_1791 CPS_1792     TRUE 0.607 26.000 0.000 NA   NA
 839600 839601 CPS_1793 CPS_1794     TRUE 0.832 7.000 0.000 1.000   NA
 839601 839602 CPS_1794 CPS_1795     FALSE 0.412 42.000 0.000 0.091   NA
 839602 839603 CPS_1795 CPS_1796     FALSE 0.377 53.000 0.000 1.000   NA
 839603 839604 CPS_1796 CPS_1797     FALSE 0.020 478.000 0.000 NA   NA
 839604 839605 CPS_1797 CPS_1798     FALSE 0.388 53.000 0.000 NA   NA
 839605 839606 CPS_1798 CPS_1799     FALSE 0.125 221.000 0.000 NA   NA
 839606 839607 CPS_1799 CPS_1800     FALSE 0.143 170.000 0.000 NA   NA
 839608 839609 CPS_1801 CPS_1802     TRUE 0.489 36.000 0.000 NA   NA
 839609 839610 CPS_1802 CPS_1803   lepB2 FALSE 0.286 76.000 0.000 NA   NA
 839610 839611 CPS_1803 CPS_1804 lepB2   TRUE 0.862 0.000 0.000 1.000   NA
 839611 839612 CPS_1804 CPS_1805     TRUE 0.845 4.000 0.000 1.000   NA
 839613 839614 CPS_1806 CPS_1807     FALSE 0.388 53.000 0.000 NA   NA
 839614 839615 CPS_1807 CPS_1808     TRUE 0.865 1.000 0.000 NA   NA
 839615 839616 CPS_1808 CPS_1809     FALSE 0.137 191.000 0.000 NA   NA
 839619 839620 CPS_1812 CPS_1813     TRUE 0.982 -3.000 0.145 NA N NA
 839621 839622 CPS_1814 CPS_1815     FALSE 0.016 531.000 0.000 NA   NA
 839622 839623 CPS_1815 CPS_1816     TRUE 0.993 -3.000 0.333 NA   NA
 839623 839624 CPS_1816 CPS_1817     TRUE 0.738 28.000 0.031 NA   NA
 839624 839625 CPS_1817 CPS_1818     TRUE 0.639 53.000 0.047 NA   NA
 839626 839627 CPS_1819 CPS_1820     TRUE 0.535 105.000 0.000 0.029 Y NA
 839628 839629 CPS_1821 CPS_1822     FALSE 0.078 283.000 0.000 NA   NA
 839629 839630 CPS_1822 CPS_1823     FALSE 0.068 301.000 0.000 NA   NA
 839630 839631 CPS_1823 CPS_1824     TRUE 0.779 -13.000 0.000 NA   NA
 839631 839632 CPS_1824 CPS_1825     FALSE 0.184 102.000 0.000 NA   NA
 839638 839639 CPS_1831 CPS_1832 torE torC TRUE 0.943 61.000 0.379 NA   NA
 839639 839640 CPS_1832 CPS_1833 torC torA TRUE 0.999 16.000 1.000 0.052 Y NA
 839640 839641 CPS_1833 CPS_1834 torA torD TRUE 0.984 -3.000 0.185 0.052   NA
 839641 839642 CPS_1834 CPS_1835 torD   FALSE 0.012 589.000 0.000 1.000   NA
 839642 839643 CPS_1835 CPS_1836     TRUE 0.976 65.000 0.667 NA   NA
 839645 839646 CPS_1838 CPS_1839     FALSE 0.018 500.000 0.000 NA   NA
 839646 839647 CPS_1839 CPS_1840     TRUE 0.997 3.000 0.464 1.000 N NA
 839647 839648 CPS_1840 CPS_1841     TRUE 0.998 5.000 0.729 NA   NA
 839648 839649 CPS_1841 CPS_1842     TRUE 0.998 -3.000 0.743 NA   NA
 839649 839650 CPS_1842 CPS_1843     FALSE 0.240 86.000 0.000 NA   NA
 839651 839652 CPS_1844 CPS_1845     FALSE 0.165 109.000 0.000 NA   NA
 839652 839653 CPS_1845 CPS_1846     FALSE 0.115 234.000 0.000 NA   NA
 839655 839656 CPS_1848 CPS_1849     TRUE 0.999 0.000 0.800 NA N NA
 839656 839657 CPS_1849 CPS_1850     TRUE 0.581 168.000 0.036 0.017 Y NA
 839657 839658 CPS_1850 CPS_1851     FALSE 0.337 129.000 0.036 1.000 N NA
 839658 839659 CPS_1851 CPS_1852   exbD1 TRUE 0.994 32.000 0.577 0.046 Y NA
 839659 839660 CPS_1852 CPS_1853 exbD1 exbB1 TRUE 0.993 11.000 0.211 0.055 Y NA
 839660 839661 CPS_1853 CPS_1854 exbB1   FALSE 0.300 90.000 0.000 1.000 N NA
 839662 839663 CPS_1855 CPS_1856     TRUE 0.999 5.000 0.848 NA   NA
 839663 839664 CPS_1856 CPS_1857     FALSE 0.146 148.000 0.000 NA   NA
 839664 839665 CPS_1857 CPS_1858   hugA TRUE 0.499 144.000 0.000 NA Y NA
 839665 839666 CPS_1858 CPS_1859 hugA   FALSE 0.161 232.000 0.000 1.000 N NA
 839667 839668 CPS_1860 CPS_1861     FALSE 0.134 203.000 0.000 NA   NA
 839668 839669 CPS_1861 CPS_1862     FALSE 0.274 78.000 0.000 NA   NA
 839670 839671 CPS_1863 CPS_1864     TRUE 0.994 -7.000 0.222 NA Y NA
 839671 839672 CPS_1864 CPS_1865     TRUE 0.656 29.000 0.000 1.000 N NA
 839672 839673 CPS_1865 CPS_1866     TRUE 0.974 0.000 0.000 1.000 Y NA
 839673 839674 CPS_1866 CPS_1867     FALSE 0.143 162.000 0.000 NA   NA
 839674 839675 CPS_1867 CPS_1868   pfoR FALSE 0.011 669.000 0.000 NA   NA
 839675 839676 CPS_1868 CPS_1869 pfoR iadA FALSE 0.087 314.000 0.000 1.000 N NA
 839676 839677 CPS_1869 CPS_1870 iadA cphB TRUE 0.877 9.000 0.000 1.000 N NA
 839677 839678 CPS_1870 CPS_1871 cphB   TRUE 0.518 254.000 0.154 1.000 N NA
 839678 839679 CPS_1871 CPS_1872     TRUE 0.788 49.000 0.000 0.002 Y NA
 839683 839684 CPS_1876 CPS_1877 cydA cydB TRUE 0.999 11.000 0.714 0.052 Y NA
 839684 839685 CPS_1877 CPS_1878 cydB   TRUE 0.727 42.000 0.057 NA   NA
 839685 839686 CPS_1878 CPS_1879   cydD TRUE 0.681 52.000 0.057 NA   NA
 839686 839687 CPS_1879 CPS_1880 cydD   TRUE 0.986 -3.000 0.075 0.004 Y NA
 839687 839688 CPS_1880 CPS_1881     TRUE 0.556 30.000 0.000 NA   NA
 839689 839690 CPS_1882 CPS_1883     TRUE 0.997 -7.000 0.562 NA   NA
 839690 839691 CPS_1883 CPS_1884     FALSE 0.024 448.000 0.000 NA   NA
 839691 839692 CPS_1884 CPS_1885     TRUE 0.936 106.000 0.571 1.000 N NA
 839692 839693 CPS_1885 CPS_1886     TRUE 0.749 -25.000 0.000 NA   NA
 839693 839694 CPS_1886 CPS_1887   exaA FALSE 0.139 184.000 0.000 NA   NA
 839696 839697 CPS_1889 CPS_1890   exaB TRUE 0.998 -10.000 0.786 1.000 N NA
 839698 839699 CPS_1891 CPS_1892     TRUE 0.989 30.000 0.615 NA   NA
 839699 839700 CPS_1892 CPS_1893     TRUE 0.971 -30.000 0.189 NA   NA
 839700 839701 CPS_1893 CPS_1894     TRUE 0.998 0.000 0.635 0.090   NA
 839701 839702 CPS_1894 CPS_1895     FALSE 0.028 413.000 0.000 1.000   NA
 839702 839703 CPS_1895 CPS_1896     TRUE 0.825 9.000 0.000 1.000   NA
 839703 839704 CPS_1896 CPS_1897     FALSE 0.147 134.000 0.000 NA   NA
 839705 839706 CPS_1898 CPS_1899     FALSE 0.096 256.000 0.000 NA   NA
 839708 839709 CPS_1901 CPS_1902     FALSE 0.230 89.000 0.000 NA   NA
 839709 839710 CPS_1902 CPS_1903     FALSE 0.015 697.000 0.000 1.000 N NA
 839710 839711 CPS_1903 CPS_1904     FALSE 0.297 70.000 0.000 1.000   NA
 839711 839712 CPS_1904 CPS_1905     TRUE 0.531 32.000 0.000 NA   NA
 839712 839713 CPS_1905 CPS_1906     TRUE 0.487 53.000 0.000 NA N NA
 839716 839717 CPS_1909 CPS_1910     TRUE 0.991 -3.000 0.250 NA N NA
 839717 839718 CPS_1910 CPS_1911     FALSE 0.136 195.000 0.000 NA   NA
 839718 839719 CPS_1911 CPS_1912     FALSE 0.160 113.000 0.000 NA   NA
 839719 839720 CPS_1912 CPS_1913     FALSE 0.147 132.000 0.000 NA   NA
 839720 839721 CPS_1913 CPS_1914     FALSE 0.223 91.000 0.000 NA   NA
 839722 839723 CPS_1915 CPS_1916     TRUE 0.999 2.000 1.000 0.002 N NA
 839724 839725 CPS_1917 CPS_1918     FALSE 0.256 82.000 0.000 NA   NA
 839725 839726 CPS_1918 CPS_1919     TRUE 0.999 9.000 1.000 NA   NA
 839726 839727 CPS_1919 CPS_1920     FALSE 0.335 63.000 0.000 NA   NA
 839727 839728 CPS_1920 CPS_1921     TRUE 0.831 9.000 0.000 NA   NA
 839731 839732 CPS_1924 CPS_1925     FALSE 0.233 88.000 0.000 NA   NA
 839733 839734 CPS_1926 CPS_1927     TRUE 0.886 103.000 0.222 0.012 Y NA
 839734 839735 CPS_1927 CPS_1928     TRUE 0.798 50.000 0.000 NA Y NA
 839735 839736 CPS_1928 CPS_1929     TRUE 0.793 78.000 0.049 NA Y NA
 839736 839737 CPS_1929 CPS_1930     TRUE 0.999 -7.000 0.756 1.000 Y NA
 839737 839738 CPS_1930 CPS_1931     FALSE 0.028 418.000 0.000 1.000   NA
 839738 839739 CPS_1931 CPS_1932     FALSE 0.093 256.000 0.000 1.000   NA
 839739 839740 CPS_1932 CPS_1933     FALSE 0.356 268.000 0.000 1.000 Y NA
 839741 839742 CPS_1934 CPS_1935     FALSE 0.145 149.000 0.000 NA   NA
 839745 839746 CPS_1938 CPS_1939     TRUE 0.499 119.000 0.000 0.022 Y NA
 839746 839747 CPS_1939 CPS_1940     TRUE 0.956 -10.000 0.000 0.022 Y NA
 839748 839749 CPS_1941 CPS_1942     TRUE 0.567 29.000 0.000 NA   NA
 839749 839750 CPS_1942 CPS_1943   czcA TRUE 0.996 -7.000 0.514 NA   NA
 839750 839751 CPS_1943 CPS_1944 czcA   TRUE 0.992 1.000 0.286 NA   NA
 839752 839753 CPS_1945 CPS_1946     FALSE 0.143 162.000 0.000 NA   NA
 839753 839754 CPS_1946 CPS_1947     FALSE 0.054 334.000 0.000 NA   NA
 839754 839755 CPS_1947 CPS_1948     TRUE 0.855 2.000 0.004 NA   NA
 839756 839757 CPS_1949 CPS_1950     FALSE 0.017 501.000 0.000 1.000   NA
 839757 839758 CPS_1950 CPS_1951     TRUE 0.999 -3.000 0.774 1.000   NA
 839758 839759 CPS_1951 CPS_1952     TRUE 0.991 35.000 0.769 NA   NA
 839759 839760 CPS_1952 CPS_1953     TRUE 0.999 0.000 0.744 NA   NA
 839763 839764 CPS_1956 CPS_1957     FALSE 0.181 209.000 0.000 1.000 N NA
 839764 839765 CPS_1957 CPS_1958     TRUE 0.984 11.000 0.222 NA   NA
 839765 839766 CPS_1958 CPS_1959     TRUE 0.993 11.000 0.400 NA   NA
 839768 839769 CPS_1961 CPS_1962     TRUE 0.947 30.000 0.200 NA N NA
 839770 839771 CPS_1963 CPS_1964     TRUE 0.507 34.000 0.000 NA   NA
 839771 839772 CPS_1964 CPS_1965     TRUE 0.607 26.000 0.000 NA   NA
 839775 839776 CPS_1968 CPS_1969   cdd FALSE 0.185 199.000 0.000 1.000 N NA
 839776 839777 CPS_1969 CPS_1970 cdd deoA TRUE 0.964 12.000 0.023 1.000 Y NA
 839778 839779 CPS_1971 CPS_1972 tdk deoC TRUE 0.495 133.000 0.000 1.000 Y NA
 839779 839780 CPS_1972 CPS_1973 deoC   TRUE 0.797 54.000 0.014 1.000 Y NA
 839780 839781 CPS_1973 CPS_1974   udk TRUE 0.882 29.000 0.000 1.000 Y NA
 839781 839782 CPS_1974 CPS_1975 udk   TRUE 0.779 -13.000 0.000 NA   NA
 839783 839784 CPS_1976 CPS_1977 deoB   FALSE 0.195 163.000 0.000 1.000 N NA
 839785 839786 CPS_1978 CPS_1979 deoD add2 FALSE 0.396 248.000 0.000 1.000 Y NA
 839786 839787 CPS_1979 CPS_1980 add2   FALSE 0.152 117.000 0.000 1.000   NA
 839787 839788 CPS_1980 CPS_1981     FALSE 0.143 173.000 0.000 NA   NA
 839789 839790 CPS_1982 CPS_1983     FALSE 0.128 217.000 0.000 NA   NA
 839790 839791 CPS_1983 CPS_1984     TRUE 0.999 0.000 0.909 1.000   NA
 839791 839792 CPS_1984 CPS_1985     TRUE 0.999 -13.000 0.909 0.005 Y NA
 839793 839794 CPS_1986 CPS_1987   fnr TRUE 0.966 146.000 0.619 1.000 Y NA
 839794 839795 CPS_1987 CPS_1988 fnr   TRUE 0.821 54.000 0.141 1.000   NA
 839795 839796 CPS_1988 CPS_1989     TRUE 0.991 -3.000 0.266 NA   NA
 839796 839797 CPS_1989 CPS_1990     TRUE 0.980 103.000 0.713 NA Y NA
 839797 839798 CPS_1990 CPS_1991     TRUE 0.735 101.000 0.197 NA   NA
 839798 839799 CPS_1991 CPS_1992   ccoP TRUE 0.839 209.000 0.404 NA   NA
 839799 839800 CPS_1992 CPS_1993 ccoP ccoQ TRUE 0.997 -7.000 0.636 0.002   NA
 839800 839801 CPS_1993 CPS_1994 ccoQ ccoO TRUE 0.997 11.000 0.667 0.002   NA
 839801 839802 CPS_1994 CPS_1995 ccoO ccoN TRUE 0.998 11.000 0.700 0.002 N NA
 839802 839803 CPS_1995 CPS_1996 ccoN   FALSE 0.038 432.000 0.000 1.000 N NA
 839805 839806 CPS_1998 CPS_1999     TRUE 0.629 250.000 0.233 1.000   NA
 839807 839808 CPS_2000 CPS_2001     FALSE 0.290 75.000 0.000 NA   NA
 839809 839810 CPS_2002 CPS_2003     FALSE 0.170 107.000 0.000 NA   NA
 839812 839813 CPS_2005 CPS_2006     TRUE 0.910 4.000 0.014 1.000 N NA
 839814 839815 CPS_2007 CPS_2008     FALSE 0.195 99.000 0.000 NA   NA
 839817 839818 CPS_2010 CPS_2011     FALSE 0.302 72.000 0.000 NA   NA
 839818 839819 CPS_2011 CPS_2012   dctB FALSE 0.147 133.000 0.000 NA   NA
 839819 839820 CPS_2012 CPS_2013 dctB dctD TRUE 0.915 176.000 0.344 0.089 Y NA
 839822 839823 CPS_2015 CPS_2016     TRUE 0.671 19.000 0.000 NA   NA
 839823 839824 CPS_2016 CPS_2017     FALSE 0.290 75.000 0.000 NA   NA
 839824 839825 CPS_2017 CPS_2018     FALSE 0.026 438.000 0.000 NA   NA
 839825 839826 CPS_2018 CPS_2019     TRUE 0.424 46.000 0.000 NA   NA
 839828 839829 CPS_2021 CPS_2022     FALSE 0.367 56.000 0.000 NA   NA
 839829 839830 CPS_2022 CPS_2023   gabD1 FALSE 0.009 936.000 0.000 NA   NA
 839830 839831 CPS_2023 CPS_2024 gabD1   FALSE 0.353 59.000 0.000 NA   NA
 839831 839832 CPS_2024 CPS_2025     FALSE 0.137 189.000 0.000 NA   NA
 839832 839833 CPS_2025 CPS_2026     FALSE 0.172 106.000 0.000 NA   NA
 839833 839834 CPS_2026 CPS_2027     TRUE 0.735 -33.000 0.000 NA   NA
 839835 839836 CPS_2028 CPS_2029     FALSE 0.175 105.000 0.000 NA   NA
 839836 839837 CPS_2029 CPS_2030     TRUE 0.739 14.000 0.000 1.000   NA
 839838 839839 CPS_2031 CPS_2032     TRUE 0.736 21.000 0.000 NA N NA
 839839 839840 CPS_2032 CPS_2033     TRUE 0.963 -7.000 0.000 0.028 Y NA
 839840 839841 CPS_2033 CPS_2034     TRUE 0.420 47.000 0.000 NA   NA
 839842 839843 CPS_2035 CPS_2036   potD FALSE 0.130 201.000 0.000 1.000   NA
 839843 839844 CPS_2036 CPS_2037 potD potC TRUE 0.993 63.000 0.800 0.045 Y NA
 839844 839845 CPS_2037 CPS_2038 potC potB TRUE 0.999 -3.000 0.800 0.045 Y NA
 839845 839846 CPS_2038 CPS_2039 potB potA TRUE 0.998 -3.000 0.364 1.000 Y NA
 839846 839847 CPS_2039 CPS_2040 potA   FALSE 0.053 747.000 0.000 1.000 Y NA
 839847 839848 CPS_2040 CPS_2041     FALSE 0.143 159.000 0.000 NA   NA
 839850 839851 CPS_2043 CPS_2044   argE2 TRUE 0.471 37.000 0.000 1.000   NA
 839851 839852 CPS_2044 CPS_2045 argE2   TRUE 0.947 0.000 0.047 NA   NA
 839852 839853 CPS_2045 CPS_2046     TRUE 0.966 44.000 0.419 NA   NA
 839853 839854 CPS_2046 CPS_2047     TRUE 0.973 0.000 0.083 NA N NA
 839856 839857 CPS_2049 CPS_2050     FALSE 0.135 201.000 0.000 NA   NA
 839857 839858 CPS_2050 CPS_2051     FALSE 0.129 263.000 0.000 1.000 N NA
 839858 839859 CPS_2051 CPS_2052   aspA FALSE 0.030 471.000 0.000 1.000 N NA
 839859 839860 CPS_2052 CPS_2053 aspA   FALSE 0.071 343.000 0.000 1.000 N NA
 839860 839861 CPS_2053 CPS_2054     FALSE 0.261 99.000 0.000 1.000 N NA
 839862 839863 CPS_2055 CPS_2056   fdhG1 FALSE 0.207 123.000 0.000 1.000 N NA
 839863 839864 CPS_2056 CPS_2057 fdhG1 fdhB1 TRUE 1.000 2.000 0.870 0.003 Y NA
 839864 839865 CPS_2057 CPS_2058 fdhB1 fdhA1 TRUE 0.996 3.000 0.466 0.003   NA
 839865 839866 CPS_2058 CPS_2059 fdhA1 fdhD1 TRUE 0.738 14.000 0.010 0.003   NA
 839866 839867 CPS_2059 CPS_2060 fdhD1   TRUE 0.579 34.000 0.021 0.003   NA
 839867 839868 CPS_2060 CPS_2061   hisD1 FALSE 0.138 161.000 0.000 1.000   NA
 839869 839870 CPS_2062 CPS_2063   hupB2 FALSE 0.103 227.000 0.000 0.047   NA
 839870 839871 CPS_2063 CPS_2064 hupB2   FALSE 0.260 81.000 0.000 NA   NA
 839872 839873 CPS_2065 CPS_2066     FALSE 0.144 152.000 0.000 NA   NA
 839873 839874 CPS_2066 CPS_2067     FALSE 0.143 163.000 0.000 NA   NA
 839875 839876 CPS_2068 CPS_2069     FALSE 0.023 453.000 0.000 NA   NA
 839878 839879 CPS_2071 CPS_2072     FALSE 0.065 306.000 0.000 NA   NA
 839881 839882 CPS_2074 CPS_2075     FALSE 0.105 220.000 0.000 0.007   NA
 839883 839884 CPS_2076 CPS_2077     FALSE 0.101 250.000 0.000 NA   NA
 839884 839885 CPS_2077 CPS_2078     FALSE 0.155 119.000 0.000 NA   NA
 839886 839887 CPS_2079 CPS_2080     FALSE 0.377 74.000 0.000 1.000 N NA
 839887 839888 CPS_2080 CPS_2081     FALSE 0.331 281.000 0.000 1.000 Y NA
 839888 839889 CPS_2081 CPS_2082     TRUE 0.523 45.000 0.000 1.000 N NA
 839890 839891 CPS_2083 CPS_2084     FALSE 0.256 100.000 0.000 1.000 N NA
 839892 839893 CPS_2085 CPS_2086     FALSE 0.186 197.000 0.000 1.000 N NA
 839894 839895 CPS_2087 CPS_2088     TRUE 0.650 21.000 0.000 NA   NA
 839895 839896 CPS_2088 CPS_2089     FALSE 0.010 758.000 0.000 NA   NA
 839896 839897 CPS_2089 CPS_2090     FALSE 0.013 592.000 0.000 NA   NA
 839897 839898 CPS_2090 CPS_2091     TRUE 0.478 279.000 0.057 0.003 Y NA
 839898 839899 CPS_2091 CPS_2092     FALSE 0.128 206.000 0.000 1.000   NA
 839899 839900 CPS_2092 CPS_2093     TRUE 0.993 24.000 0.678 1.000   NA
 839900 839901 CPS_2093 CPS_2094     TRUE 0.997 -3.000 0.296 1.000 Y NA
 839901 839902 CPS_2094 CPS_2095     TRUE 0.997 -7.000 0.355 NA Y NA
 839902 839903 CPS_2095 CPS_2096     TRUE 0.924 2.000 0.016 NA N NA
 839903 839904 CPS_2096 CPS_2097     TRUE 0.875 -10.000 0.012 1.000 N NA
 839904 839905 CPS_2097 CPS_2098     FALSE 0.325 65.000 0.000 NA   NA
 839905 839906 CPS_2098 CPS_2099     FALSE 0.135 198.000 0.000 NA   NA
 839906 839907 CPS_2099 CPS_2100     TRUE 0.578 24.000 0.000 0.002   NA
 839907 839908 CPS_2100 CPS_2101     TRUE 0.800 -10.000 0.000 NA   NA
 839908 839909 CPS_2101 CPS_2102     FALSE 0.344 61.000 0.000 NA   NA
 839909 839910 CPS_2102 CPS_2103     TRUE 0.852 -16.000 0.025 NA   NA
 839910 839911 CPS_2103 CPS_2104     TRUE 0.986 -3.000 0.200 NA   NA
 839911 839912 CPS_2104 CPS_2105     TRUE 0.453 41.000 0.000 NA   NA
 839912 839913 CPS_2105 CPS_2106     FALSE 0.373 55.000 0.000 NA   NA
 839913 839914 CPS_2106 CPS_2107   galU2 TRUE 0.518 33.000 0.000 NA   NA
 839914 839915 CPS_2107 CPS_2108 galU2 pgi2 FALSE 0.069 348.000 0.000 1.000 N NA
 839916 839917 CPS_2109 CPS_2110     TRUE 0.424 46.000 0.000 NA   NA
 839917 839918 CPS_2110 CPS_2111     FALSE 0.207 129.000 0.000 NA N NA
 839918 839919 CPS_2111 CPS_2112     TRUE 0.669 281.000 0.315 NA   NA
 839920 839921 CPS_2113 CPS_2114   aspS FALSE 0.224 150.000 0.011 1.000 N NA
 839921 839922 CPS_2114 CPS_2115 aspS ruvC FALSE 0.220 166.000 0.015 0.013 N NA
 839922 839923 CPS_2115 CPS_2116 ruvC ruvA TRUE 0.919 241.000 0.451 0.009 Y NA
 839923 839924 CPS_2116 CPS_2117 ruvA ruvB TRUE 0.992 37.000 0.549 0.002 Y NA
 839924 839925 CPS_2117 CPS_2118 ruvB   FALSE 0.094 303.000 0.000 1.000 N NA
 839925 839926 CPS_2118 CPS_2119     FALSE 0.080 330.000 0.000 1.000 N NA
 839926 839927 CPS_2119 CPS_2120     TRUE 0.956 12.000 0.000 NA Y NA
 839927 839928 CPS_2120 CPS_2121     FALSE 0.219 117.000 0.000 NA N NA
 839928 839929 CPS_2121 CPS_2122     TRUE 0.991 57.000 1.000 0.087   NA
 839931 839932 CPS_2124 CPS_2125   msbA FALSE 0.042 615.000 0.075 0.055   NA
 839932 839933 CPS_2125 CPS_2126 msbA lpxK TRUE 0.980 13.000 0.205 1.000 N NA
 839933 839934 CPS_2126 CPS_2127 lpxK   TRUE 0.844 88.000 0.263 NA   NA
 839934 839935 CPS_2127 CPS_2128   kdsB TRUE 0.991 3.000 0.265 NA   NA
 839936 839937 CPS_2129 CPS_2130     FALSE 0.147 142.000 0.000 NA   NA
 839938 839939 CPS_2131 CPS_2132     TRUE 0.995 66.000 0.948 0.004 Y NA
 839939 839940 CPS_2132 CPS_2133     FALSE 0.373 55.000 0.000 NA   NA
 839940 839941 CPS_2133 CPS_2134     FALSE 0.009 773.000 0.000 NA   NA
 839944 839945 CPS_2137 CPS_2138     FALSE 0.310 69.000 0.000 NA   NA
 839945 839946 CPS_2138 CPS_2139   mfd FALSE 0.149 358.000 0.071 NA   NA
 839947 839948 CPS_2140 CPS_2141     FALSE 0.040 366.000 0.000 1.000   NA
 839948 839949 CPS_2141 CPS_2142   cysD FALSE 0.157 236.000 0.000 1.000 N NA
 839949 839950 CPS_2142 CPS_2143 cysD cysN TRUE 0.633 56.000 0.043 0.001 N NA
 839950 839951 CPS_2143 CPS_2144 cysN   FALSE 0.338 278.000 0.000 1.000 Y NA
 839951 839952 CPS_2144 CPS_2145   cysC TRUE 0.927 98.000 0.291 1.000 Y NA
 839952 839953 CPS_2145 CPS_2146 cysC   FALSE 0.187 321.000 0.070 NA   NA
 839953 839954 CPS_2146 CPS_2147   galE FALSE 0.143 164.000 0.000 NA   NA
 839956 839957 CPS_2149 CPS_2150   ggt1 TRUE 0.867 0.000 0.000 NA   NA
 839957 839958 CPS_2150 CPS_2151 ggt1   FALSE 0.031 403.000 0.000 1.000   NA
 839958 839959 CPS_2151 CPS_2152     FALSE 0.133 185.000 0.000 1.000   NA
 839959 839960 CPS_2152 CPS_2153     FALSE 0.013 586.000 0.000 NA   NA
 839960 839961 CPS_2153 CPS_2154     TRUE 0.995 3.000 0.377 NA   NA
 839961 839962 CPS_2154 CPS_2155     TRUE 0.950 35.000 0.286 0.028   NA
 839962 839963 CPS_2155 CPS_2156     TRUE 0.985 25.000 0.418 1.000 N NA
 839963 839964 CPS_2156 CPS_2157     FALSE 0.384 52.000 0.000 1.000   NA
 839967 839968 CPS_2160 CPS_2161     FALSE 0.142 174.000 0.000 NA   NA
 839970 839971 CPS_2163 CPS_2164     FALSE 0.132 209.000 0.000 NA   NA
 839971 839972 CPS_2164 CPS_2165     FALSE 0.021 469.000 0.000 NA   NA
 839972 839973 CPS_2165 CPS_2166     FALSE 0.146 147.000 0.000 NA   NA
 839973 839974 CPS_2166 CPS_2167     FALSE 0.143 170.000 0.000 NA   NA
 839974 839975 CPS_2167 CPS_2168     FALSE 0.209 95.000 0.000 NA   NA
 839975 839976 CPS_2168 CPS_2169     FALSE 0.159 115.000 0.000 NA   NA
 839976 839977 CPS_2169 CPS_2170     FALSE 0.146 146.000 0.000 NA   NA
 839977 839978 CPS_2170 CPS_2171     FALSE 0.158 116.000 0.000 NA   NA
 839980 839981 CPS_2173 CPS_2174 blc   FALSE 0.199 98.000 0.000 NA   NA
 839981 839982 CPS_2174 CPS_2175     FALSE 0.097 255.000 0.000 NA   NA
 839982 839983 CPS_2175 CPS_2176     TRUE 0.424 46.000 0.000 NA   NA
 839983 839984 CPS_2176 CPS_2177     FALSE 0.134 204.000 0.000 NA   NA
 839984 839985 CPS_2177 CPS_2178     FALSE 0.181 103.000 0.000 NA   NA
 839985 839986 CPS_2178 CPS_2179     FALSE 0.162 111.000 0.000 NA   NA
 839990 839991 CPS_2183 CPS_2184     FALSE 0.290 75.000 0.000 NA   NA
 839991 839992 CPS_2184 CPS_2185     FALSE 0.130 214.000 0.000 NA   NA
 839992 839993 CPS_2185 CPS_2186     TRUE 0.482 37.000 0.000 NA   NA
 839995 839996 CPS_2188 CPS_2189     TRUE 0.739 14.000 0.000 1.000   NA
 840000 840001 CPS_2193 CPS_2194 nth   TRUE 0.541 139.000 0.109 1.000 N NA
 840001 840002 CPS_2194 CPS_2195     TRUE 0.999 -10.000 0.908 0.050 Y NA
 840002 840003 CPS_2195 CPS_2196     TRUE 1.000 0.000 0.924 0.050 Y NA
 840003 840004 CPS_2196 CPS_2197     TRUE 0.992 72.000 0.814 0.050 Y NA
 840004 840005 CPS_2197 CPS_2198     TRUE 0.998 7.000 0.537 0.020 Y NA
 840005 840006 CPS_2198 CPS_2199     TRUE 0.999 2.000 0.564 0.050 Y NA
 840006 840007 CPS_2199 CPS_2200     TRUE 0.502 202.000 0.102 1.000 N NA
 840008 840009 CPS_2201 CPS_2202   nusA TRUE 0.987 49.000 0.759 NA   NA
 840009 840010 CPS_2202 CPS_2203 nusA infB TRUE 0.982 22.000 0.342 1.000 N NA
 840010 840011 CPS_2203 CPS_2204 infB rbfA TRUE 0.952 203.000 0.530 1.000 Y NA
 840011 840012 CPS_2204 CPS_2205 rbfA truB TRUE 0.997 4.000 0.318 1.000 Y NA
 840012 840013 CPS_2205 CPS_2206 truB rpsO TRUE 0.806 244.000 0.211 1.000 Y NA
 840013 840014 CPS_2206 CPS_2207 rpsO pnp TRUE 0.713 382.000 0.335 1.000 Y NA
 840014 840015 CPS_2207 CPS_2208 pnp   FALSE 0.379 181.000 0.071 1.000   NA
 840015 840016 CPS_2208 CPS_2209     FALSE 0.411 93.000 0.047 0.015   NA
 840019 840020 CPS_2212 CPS_2213     FALSE 0.150 127.000 0.000 NA   NA
 840020 840021 CPS_2213 CPS_2214   gltA TRUE 0.544 31.000 0.000 NA   NA
 840022 840023 CPS_2215 CPS_2216 sdhC sdhD TRUE 0.998 -6.000 0.453 0.001 Y NA
 840023 840024 CPS_2216 CPS_2217 sdhD sdhA TRUE 0.999 1.000 0.705 0.001 Y NA
 840024 840025 CPS_2217 CPS_2218 sdhA sdhB TRUE 0.998 12.000 0.604 0.001 Y NA
 840025 840026 CPS_2218 CPS_2219 sdhB sucA TRUE 0.421 321.000 0.067 1.000 Y NA
 840026 840027 CPS_2219 CPS_2220 sucA sucB TRUE 0.991 59.000 0.667 1.000 Y NA
 840027 840028 CPS_2220 CPS_2221 sucB sucC TRUE 0.768 189.000 0.136 1.000 Y NA
 840028 840029 CPS_2221 CPS_2222 sucC sucD TRUE 0.999 0.000 0.806 0.001 Y NA
 840030 840031 CPS_2223 CPS_2224     FALSE 0.008 1322.000 0.000 NA   NA
 840031 840032 CPS_2224 CPS_2225     TRUE 0.607 26.000 0.000 NA   NA
 840033 840034 CPS_2226 CPS_2227     FALSE 0.325 65.000 0.000 NA   NA
 840034 840035 CPS_2227 CPS_2228     FALSE 0.147 134.000 0.000 NA   NA
 840035 840036 CPS_2228 CPS_2229     TRUE 0.845 5.000 0.000 NA   NA
 840039 840040 CPS_2232 CPS_2233     FALSE 0.143 165.000 0.000 NA   NA
 840041 840042 CPS_2234 CPS_2235     TRUE 0.716 -67.000 0.000 NA   NA
 840044 840045 CPS_2237 CPS_2238     FALSE 0.036 384.000 0.000 NA   NA
 840045 840046 CPS_2238 CPS_2239     FALSE 0.125 221.000 0.000 NA   NA
 840046 840047 CPS_2239 CPS_2240     FALSE 0.147 139.000 0.000 NA   NA
 840049 840050 CPS_2242 CPS_2243     FALSE 0.140 164.000 0.006 1.000   NA
 840050 840051 CPS_2243 CPS_2244     FALSE 0.154 181.000 0.009 NA   NA
 840051 840052 CPS_2244 CPS_2245     FALSE 0.142 175.000 0.000 NA   NA
 840052 840053 CPS_2245 CPS_2246     TRUE 0.726 -52.000 0.000 NA   NA
 840056 840057 CPS_2249 CPS_2250     FALSE 0.286 76.000 0.000 NA   NA
 840057 840058 CPS_2250 CPS_2251   cysK FALSE 0.256 152.000 0.032 NA   NA
 840058 840059 CPS_2251 CPS_2252 cysK   FALSE 0.203 151.000 0.000 NA N NA
 840060 840061 CPS_2253 CPS_2254     TRUE 0.829 -7.000 0.000 NA   NA
 840061 840062 CPS_2254 CPS_2255   dnaQ FALSE 0.329 64.000 0.000 NA   NA
 840062 840063 CPS_2255 CPS_2256 dnaQ   TRUE 0.958 -9.000 0.098 NA   NA
 840063 840064 CPS_2256 CPS_2257     TRUE 0.769 13.000 0.000 NA   NA
 840064 840065 CPS_2257 CPS_2258     FALSE 0.195 99.000 0.000 NA   NA
 840065 840066 CPS_2258 CPS_2259     FALSE 0.315 68.000 0.000 NA   NA
 840066 840067 CPS_2259 CPS_2260     FALSE 0.315 68.000 0.000 NA   NA
 840067 840068 CPS_2260 CPS_2261     FALSE 0.315 68.000 0.000 NA   NA
 840068 840069 CPS_2261 CPS_2262     FALSE 0.155 119.000 0.000 NA   NA
 840069 840070 CPS_2262 CPS_2263     FALSE 0.017 522.000 0.000 NA   NA
 840071 840072 CPS_2264 CPS_2265   fadE FALSE 0.138 166.000 0.000 1.000   NA
 840074 840075 CPS_2267 CPS_2268     FALSE 0.256 82.000 0.000 NA   NA
 840075 840076 CPS_2268 CPS_2269     TRUE 0.430 45.000 0.000 NA   NA
 840076 840077 CPS_2269 CPS_2270     FALSE 0.147 134.000 0.000 NA   NA
 840080 840081 CPS_2273 CPS_2274 polB metC FALSE 0.185 200.000 0.000 1.000 N NA
 840083 840084 CPS_2276 CPS_2277     FALSE 0.132 259.000 0.000 1.000 N NA
 840084 840085 CPS_2277 CPS_2278     TRUE 0.955 66.000 0.273 0.028 Y NA
 840086 840087 CPS_2279 CPS_2280 pyk   TRUE 0.541 96.000 0.071 1.000 N NA
 840088 840089 CPS_2281 CPS_2282 zwf pgl TRUE 0.993 3.000 0.163 1.000 Y NA
 840089 840090 CPS_2282 CPS_2283 pgl edd TRUE 0.941 64.000 0.202 1.000 Y NA
 840090 840091 CPS_2283 CPS_2284 edd eda TRUE 0.958 123.000 0.523 1.000 Y NA
 840092 840093 CPS_2285 CPS_2286     TRUE 0.985 84.000 1.000 NA   NA
 840094 840095 CPS_2287 CPS_2288     FALSE 0.209 95.000 0.000 NA   NA
 840097 840098 CPS_2290 CPS_2291 rluC   TRUE 0.992 12.000 0.389 1.000   NA
 840100 840101 CPS_2293 CPS_2294   rpmF TRUE 0.979 49.000 0.599 NA   NA
 840101 840102 CPS_2294 CPS_2295 rpmF plsX TRUE 0.971 41.000 0.418 1.000 N NA
 840102 840103 CPS_2295 CPS_2296 plsX fabD TRUE 0.524 305.000 0.106 0.003 Y NA
 840103 840104 CPS_2296 CPS_2297 fabD fabG TRUE 0.945 112.000 0.432 0.003 Y NA
 840104 840105 CPS_2297 CPS_2298 fabG acpP TRUE 0.905 161.000 0.321 0.003 Y NA
 840105 840106 CPS_2298 CPS_2299 acpP fabF TRUE 0.656 424.000 0.346 1.000 Y NA
 840106 840107 CPS_2299 CPS_2300 fabF pabC TRUE 0.689 141.000 0.187 1.000 N NA
 840107 840108 CPS_2300 CPS_2301 pabC   TRUE 0.903 46.000 0.204 NA   NA
 840108 840109 CPS_2301 CPS_2302   tmk TRUE 0.837 77.000 0.209 NA   NA
 840109 840110 CPS_2302 CPS_2303 tmk holB TRUE 0.986 10.000 0.211 1.000 N NA
 840110 840111 CPS_2303 CPS_2304 holB   TRUE 0.989 16.000 0.382 NA N NA
 840111 840112 CPS_2304 CPS_2305     TRUE 0.678 79.000 0.089 NA N NA
 840116 840117 CPS_2309 CPS_2310     TRUE 0.998 -10.000 0.535 NA Y NA
 840117 840118 CPS_2310 CPS_2311     FALSE 0.146 147.000 0.000 NA   NA
 840118 840119 CPS_2311 CPS_2312     FALSE 0.188 101.000 0.000 NA   NA
 840119 840120 CPS_2312 CPS_2313     FALSE 0.325 65.000 0.000 NA   NA
 840120 840121 CPS_2313 CPS_2314     FALSE 0.133 207.000 0.000 NA   NA
 840122 840123 CPS_2315 CPS_2316     FALSE 0.160 113.000 0.000 NA   NA
 840123 840124 CPS_2316 CPS_2317   ispZ TRUE 0.902 53.000 0.224 NA   NA
 840124 840125 CPS_2317 CPS_2318 ispZ   FALSE 0.147 141.000 0.000 NA   NA
 840126 840127 CPS_2319 CPS_2320     FALSE 0.277 76.000 0.000 1.000   NA
 840127 840128 CPS_2320 CPS_2321     FALSE 0.411 49.000 0.000 NA   NA
 840128 840129 CPS_2321 CPS_2322     FALSE 0.367 56.000 0.000 NA   NA
 840129 840130 CPS_2322 CPS_2323     TRUE 0.739 -31.000 0.000 NA   NA
 840130 840131 CPS_2323 CPS_2324     FALSE 0.175 105.000 0.000 NA   NA
 840131 840132 CPS_2324 CPS_2325     TRUE 0.507 34.000 0.000 NA   NA
 840133 840134 CPS_2326 CPS_2327   nrdB TRUE 0.898 33.000 0.126 1.000 N NA
 840134 840135 CPS_2327 CPS_2328 nrdB nrdA TRUE 0.918 103.000 0.300 0.001 Y NA
 840135 840136 CPS_2328 CPS_2329 nrdA   FALSE 0.015 555.000 0.000 NA   NA
 840136 840137 CPS_2329 CPS_2330   ubiG FALSE 0.009 817.000 0.000 NA   NA
 840138 840139 CPS_2331 CPS_2332 gyrA serC FALSE 0.240 104.000 0.000 1.000 N NA
 840139 840140 CPS_2332 CPS_2333 serC aroA TRUE 0.973 2.000 0.000 1.000 Y NA
 840140 840141 CPS_2333 CPS_2334 aroA cmk FALSE 0.403 364.000 0.209 1.000 N NA
 840141 840142 CPS_2334 CPS_2335 cmk rpsA TRUE 0.788 153.000 0.281 1.000 N NA
 840142 840143 CPS_2335 CPS_2336 rpsA ihfB TRUE 0.788 194.000 0.292 1.000 N NA
 840143 840144 CPS_2336 CPS_2337 ihfB   TRUE 0.819 82.000 0.208 NA   NA
 840144 840145 CPS_2337 CPS_2338     TRUE 0.977 50.000 0.576 NA   NA
 840145 840146 CPS_2338 CPS_2339   pyrF TRUE 0.569 181.000 0.125 1.000 N NA
 840148 840149 CPS_2341 CPS_2342 gnd msrB1 TRUE 0.845 12.000 0.000 1.000 N NA
 840151 840152 CPS_2344 CPS_2345 gap2   FALSE 0.132 209.000 0.000 NA   NA
 840153 840154 CPS_2346 CPS_2347     TRUE 0.962 -9.000 0.000 NA Y NA
 840154 840155 CPS_2347 CPS_2348     TRUE 0.980 12.000 0.077 NA Y NA
 840155 840156 CPS_2348 CPS_2349     TRUE 0.997 33.000 0.790 NA Y NA
 840156 840157 CPS_2349 CPS_2350     TRUE 0.618 132.000 0.167 NA   NA
 840157 840158 CPS_2350 CPS_2351   tag FALSE 0.035 382.000 0.000 1.000   NA
 840159 840160 CPS_2352 CPS_2353     FALSE 0.172 106.000 0.000 NA   NA
 840161 840162 CPS_2354 CPS_2355     TRUE 0.850 4.000 0.000 NA   NA
 840162 840163 CPS_2355 CPS_2356     FALSE 0.136 192.000 0.000 NA   NA
 840164 840165 CPS_2357 CPS_2358     FALSE 0.042 364.000 0.000 NA   NA
 840165 840166 CPS_2358 CPS_2359     FALSE 0.088 530.000 0.000 1.000 Y NA
 840166 840167 CPS_2359 CPS_2360     FALSE 0.216 91.000 0.000 1.000   NA
 840168 840169 CPS_2361 CPS_2362     FALSE 0.302 72.000 0.000 NA   NA
 840169 840170 CPS_2362 CPS_2363     FALSE 0.016 521.000 0.000 1.000   NA
 840170 840171 CPS_2363 CPS_2364     FALSE 0.240 84.000 0.000 1.000   NA
 840171 840172 CPS_2364 CPS_2365   xarB FALSE 0.188 189.000 0.000 1.000 N NA
 840172 840173 CPS_2365 CPS_2366 xarB   FALSE 0.141 136.000 0.000 1.000   NA
 840173 840174 CPS_2366 CPS_2367     TRUE 0.762 13.000 0.000 1.000   NA
 840174 840175 CPS_2367 CPS_2368     TRUE 0.662 79.000 0.000 0.002 Y NA
 840177 840178 CPS_2370 CPS_2371     FALSE 0.196 154.000 0.000 1.000 N NA
 840179 840180 CPS_2372 CPS_2373     FALSE 0.152 124.000 0.000 NA   NA
 840180 840181 CPS_2373 CPS_2374     FALSE 0.143 159.000 0.000 NA   NA
 840181 840182 CPS_2374 CPS_2375     TRUE 0.849 -3.000 0.000 1.000   NA
 840182 840183 CPS_2375 CPS_2376     TRUE 0.713 24.000 0.000 1.000 N NA
 840183 840184 CPS_2376 CPS_2377     FALSE 0.195 161.000 0.000 1.000 N NA
 840185 840186 CPS_2378 CPS_2379     FALSE 0.226 88.000 0.000 1.000   NA
 840186 840187 CPS_2379 CPS_2380     FALSE 0.321 66.000 0.000 NA   NA
 840189 840190 CPS_2382 CPS_2383     FALSE 0.143 107.000 0.000 0.005   NA
 840190 840191 CPS_2383 CPS_2384     FALSE 0.118 230.000 0.000 NA   NA
 840191 840192 CPS_2384 CPS_2385     TRUE 0.999 -7.000 0.909 NA N NA
 840192 840193 CPS_2385 CPS_2386     TRUE 0.990 -7.000 0.136 1.000 Y NA
 840194 840195 CPS_2387 CPS_2388     TRUE 0.993 2.000 0.143 1.000 Y NA
 840195 840196 CPS_2388 CPS_2389     FALSE 0.182 207.000 0.000 1.000 N NA
 840196 840197 CPS_2389 CPS_2390   glk4 TRUE 0.495 139.000 0.000 1.000 Y NA
 840197 840198 CPS_2390 CPS_2391 glk4   FALSE 0.199 98.000 0.000 NA   NA
 840198 840199 CPS_2391 CPS_2392     TRUE 0.963 3.000 0.081 NA   NA
 840206 840207 CPS_2399 CPS_2400     FALSE 0.367 56.000 0.000 NA   NA
 840207 840208 CPS_2400 CPS_2401     TRUE 0.768 -16.000 0.000 NA   NA
 840209 840210 CPS_2402 CPS_2403     FALSE 0.049 345.000 0.000 NA   NA
 840210 840211 CPS_2403 CPS_2404     FALSE 0.329 64.000 0.000 NA   NA
 840211 840212 CPS_2404 CPS_2405     TRUE 0.835 8.000 0.000 NA   NA
 840212 840213 CPS_2405 CPS_2406     TRUE 0.630 24.000 0.000 NA   NA
 840213 840214 CPS_2406 CPS_2407     FALSE 0.394 52.000 0.000 NA   NA
 840214 840215 CPS_2407 CPS_2408     TRUE 0.534 31.000 0.000 1.000   NA
 840216 840217 CPS_2409 CPS_2410     TRUE 0.430 45.000 0.000 NA   NA
 840218 840219 CPS_2411 CPS_2412     FALSE 0.157 111.000 0.000 1.000   NA
 840219 840220 CPS_2412 CPS_2413     FALSE 0.025 443.000 0.000 NA   NA
 840220 840221 CPS_2413 CPS_2414     FALSE 0.184 102.000 0.000 NA   NA
 840221 840222 CPS_2414 CPS_2415     FALSE 0.155 119.000 0.000 NA   NA
 840222 840223 CPS_2415 CPS_2416     TRUE 0.865 1.000 0.000 NA   NA
 840223 840224 CPS_2416 CPS_2417     TRUE 0.448 40.000 0.000 1.000   NA
 840224 840225 CPS_2417 CPS_2418     TRUE 0.999 2.000 0.649 0.045 Y NA
 840225 840226 CPS_2418 CPS_2419     FALSE 0.058 318.000 0.000 1.000   NA
 840226 840227 CPS_2419 CPS_2420     FALSE 0.227 90.000 0.000 NA   NA
 840228 840229 CPS_2421 CPS_2422     TRUE 0.951 15.000 0.130 NA   NA
 840230 840231 CPS_2423 CPS_2424     FALSE 0.124 222.000 0.000 NA   NA
 840232 840233 CPS_2425 CPS_2426     FALSE 0.055 332.000 0.000 NA   NA
 840234 840235 CPS_2427 CPS_2428     TRUE 0.999 -7.000 0.583 0.004 Y NA
 840235 840236 CPS_2428 CPS_2429     TRUE 0.998 -7.000 0.500 0.054 Y NA
 840236 840237 CPS_2429 CPS_2430     TRUE 0.782 12.000 0.000 1.000   NA
 840237 840238 CPS_2430 CPS_2431     TRUE 0.729 15.000 0.000 NA   NA
 840238 840239 CPS_2431 CPS_2432     FALSE 0.379 54.000 0.000 NA   NA
 840239 840240 CPS_2432 CPS_2433     FALSE 0.038 377.000 0.000 NA   NA
 840240 840241 CPS_2433 CPS_2434     FALSE 0.117 232.000 0.000 NA   NA
 840242 840243 CPS_2435 CPS_2436     FALSE 0.152 124.000 0.000 NA   NA
 840244 840245 CPS_2437 CPS_2438     TRUE 0.998 18.000 1.000 NA   NA
 840245 840246 CPS_2438 CPS_2439     TRUE 0.999 3.000 1.000 NA   NA
 840247 840248 CPS_2440 CPS_2441 rarD2   FALSE 0.127 218.000 0.000 NA   NA
 840248 840249 CPS_2441 CPS_2442     FALSE 0.143 165.000 0.000 NA   NA
 840249 840250 CPS_2442 CPS_2443     FALSE 0.147 131.000 0.000 NA   NA
 840250 840251 CPS_2443 CPS_2444     FALSE 0.152 124.000 0.000 NA   NA
 840251 840252 CPS_2444 CPS_2445     FALSE 0.133 206.000 0.000 NA   NA
 840254 840255 CPS_2447 CPS_2448     TRUE 0.706 -85.000 0.000 NA   NA
 840256 840257 CPS_2449 CPS_2450 fadH2   TRUE 0.416 48.000 0.000 NA   NA
 840257 840258 CPS_2450 CPS_2451     TRUE 0.709 16.000 0.000 NA   NA
 840260 840261 CPS_2453 CPS_2454   helD TRUE 0.721 -40.000 0.000 1.000   NA
 840261 840262 CPS_2454 CPS_2455 helD   FALSE 0.286 76.000 0.000 NA   NA
 840262 840263 CPS_2455 CPS_2456     FALSE 0.143 165.000 0.000 NA   NA
 840263 840264 CPS_2456 CPS_2457     TRUE 0.630 24.000 0.000 NA   NA
 840264 840265 CPS_2457 CPS_2458     FALSE 0.170 107.000 0.000 NA   NA
 840269 840270 CPS_2462 CPS_2463     FALSE 0.353 59.000 0.000 NA   NA
 840270 840271 CPS_2463 CPS_2464     FALSE 0.146 145.000 0.000 NA   NA
 840271 840272 CPS_2464 CPS_2465     FALSE 0.221 105.000 0.000 0.059 N NA
 840272 840273 CPS_2465 CPS_2466     FALSE 0.321 66.000 0.000 NA   NA
 840273 840274 CPS_2466 CPS_2467     FALSE 0.024 448.000 0.000 NA   NA
 840274 840275 CPS_2467 CPS_2468     TRUE 0.448 42.000 0.000 NA   NA
 840276 840277 CPS_2469 CPS_2470 folE1   FALSE 0.200 141.000 0.000 1.000 N NA
 840277 840278 CPS_2470 CPS_2471     FALSE 0.195 99.000 0.000 NA   NA
 840278 840279 CPS_2471 CPS_2472     FALSE 0.144 152.000 0.000 NA   NA
 840280 840281 CPS_2473 CPS_2474     TRUE 0.999 -3.000 0.625 1.000 Y NA
 840281 840282 CPS_2474 CPS_2475     TRUE 0.999 -3.000 0.625 1.000 Y NA
 840282 840283 CPS_2475 CPS_2476   nhaC1 FALSE 0.061 362.000 0.000 1.000 N NA
 840283 840284 CPS_2476 CPS_2477 nhaC1 glyA2 FALSE 0.198 149.000 0.000 1.000 N NA
 840284 840285 CPS_2477 CPS_2478 glyA2 soxB1 TRUE 0.639 87.000 0.000 1.000 Y NA
 840285 840286 CPS_2478 CPS_2479 soxB1 soxD1 TRUE 0.999 13.000 0.824 0.002 Y NA
 840286 840287 CPS_2479 CPS_2480 soxD1 soxA1 TRUE 0.999 -3.000 0.824 0.002   NA
 840287 840288 CPS_2480 CPS_2481 soxA1 soxG1 TRUE 0.998 -7.000 0.778 0.002   NA
 840288 840289 CPS_2481 CPS_2482 soxG1 purU1 TRUE 0.805 173.000 0.303 1.000 N NA
 840289 840290 CPS_2482 CPS_2483 purU1   FALSE 0.138 164.000 0.000 1.000   NA
 840292 840293 CPS_2485 CPS_2486     FALSE 0.164 110.000 0.000 NA   NA
 840293 840294 CPS_2486 CPS_2487     FALSE 0.146 148.000 0.000 NA   NA
 840294 840295 CPS_2487 CPS_2488     FALSE 0.094 261.000 0.000 NA   NA
 840295 840296 CPS_2488 CPS_2489     FALSE 0.109 241.000 0.000 NA   NA
 840296 840297 CPS_2489 CPS_2490     FALSE 0.252 83.000 0.000 NA   NA
 840297 840298 CPS_2490 CPS_2491     FALSE 0.157 117.000 0.000 NA   NA
 840298 840299 CPS_2491 CPS_2492     FALSE 0.192 100.000 0.000 NA   NA
 840301 840302 CPS_2494 CPS_2495     FALSE 0.144 152.000 0.000 NA   NA
 840302 840303 CPS_2495 CPS_2496     FALSE 0.236 87.000 0.000 NA   NA
 840303 840304 CPS_2496 CPS_2497     TRUE 0.498 35.000 0.000 NA   NA
 840304 840305 CPS_2497 CPS_2498     FALSE 0.146 138.000 0.000 NA   NA
 840305 840306 CPS_2498 CPS_2499     FALSE 0.127 218.000 0.000 NA   NA
 840306 840307 CPS_2499 CPS_2500     FALSE 0.133 206.000 0.000 NA   NA
 840307 840308 CPS_2500 CPS_2501     FALSE 0.012 600.000 0.000 NA   NA
 840308 840309 CPS_2501 CPS_2502     FALSE 0.157 117.000 0.000 NA   NA
 840309 840310 CPS_2502 CPS_2503     FALSE 0.143 165.000 0.000 NA   NA
 840310 840311 CPS_2503 CPS_2504     FALSE 0.132 208.000 0.000 NA   NA
 840311 840312 CPS_2504 CPS_2505     FALSE 0.373 55.000 0.000 NA   NA
 840312 840313 CPS_2505 CPS_2506     FALSE 0.153 122.000 0.000 NA   NA
 840313 840314 CPS_2506 CPS_2507     FALSE 0.146 135.000 0.000 NA   NA
 840314 840315 CPS_2507 CPS_2508     FALSE 0.158 116.000 0.000 NA   NA
 840315 840316 CPS_2508 CPS_2509     FALSE 0.159 109.000 0.000 1.000   NA
 840318 840319 CPS_2511 CPS_2512     FALSE 0.142 178.000 0.000 NA   NA
 840319 840320 CPS_2512 CPS_2513     FALSE 0.041 367.000 0.000 NA   NA
 840320 840321 CPS_2513 CPS_2514     FALSE 0.192 100.000 0.000 NA   NA
 840321 840322 CPS_2514 CPS_2515     FALSE 0.367 56.000 0.000 NA   NA
 840324 840325 CPS_2517 CPS_2518     FALSE 0.146 135.000 0.000 NA   NA
 840325 840326 CPS_2518 CPS_2519     FALSE 0.020 474.000 0.000 NA   NA
 840328 840329 CPS_2521 CPS_2522   pbuX FALSE 0.148 244.000 0.000 1.000 N NA
 840330 840331 CPS_2523 CPS_2524     TRUE 0.999 -10.000 0.875 1.000 Y NA
 840331 840332 CPS_2524 CPS_2525     TRUE 0.924 77.000 0.375 NA   NA
 840332 840333 CPS_2525 CPS_2526     TRUE 0.866 111.000 0.400 NA   NA
 840333 840334 CPS_2526 CPS_2527     TRUE 0.916 -6.000 0.019 NA N NA
 840335 840336 CPS_2528 CPS_2529     TRUE 0.854 -3.000 0.000 NA   NA
 840336 840337 CPS_2529 CPS_2530     TRUE 0.556 30.000 0.000 NA   NA
 840338 840339 CPS_2531 CPS_2532     FALSE 0.043 360.000 0.000 NA   NA
 840339 840340 CPS_2532 CPS_2533     TRUE 0.997 -3.000 0.575 NA   NA
 840340 840341 CPS_2533 CPS_2534     FALSE 0.027 426.000 0.000 NA   NA
 840341 840342 CPS_2534 CPS_2535     TRUE 0.831 9.000 0.000 NA   NA
 840343 840344 CPS_2536 CPS_2537     FALSE 0.135 200.000 0.000 NA   NA
 840344 840345 CPS_2537 CPS_2538     FALSE 0.165 109.000 0.000 NA   NA
 840345 840346 CPS_2538 CPS_2539     FALSE 0.403 69.000 0.000 NA N NA
 840346 840347 CPS_2539 CPS_2540     FALSE 0.339 60.000 0.000 1.000   NA
 840347 840348 CPS_2540 CPS_2541     FALSE 0.080 281.000 0.000 NA   NA
 840348 840349 CPS_2541 CPS_2542     FALSE 0.026 434.000 0.000 NA   NA
 840349 840350 CPS_2542 CPS_2543     TRUE 0.424 46.000 0.000 NA   NA
 840351 840352 CPS_2544 CPS_2545     FALSE 0.017 519.000 0.000 NA   NA
 840353 840354 CPS_2546 CPS_2547     FALSE 0.243 85.000 0.000 NA   NA
 840354 840355 CPS_2547 CPS_2548     FALSE 0.069 300.000 0.000 NA   NA
 840355 840356 CPS_2548 CPS_2549     FALSE 0.017 524.000 0.000 NA   NA
 840356 840357 CPS_2549 CPS_2550     TRUE 0.498 35.000 0.000 NA   NA
 840357 840358 CPS_2550 CPS_2551     FALSE 0.325 65.000 0.000 NA   NA
 840358 840359 CPS_2551 CPS_2552     FALSE 0.140 182.000 0.000 NA   NA
 840359 840360 CPS_2552 CPS_2553     FALSE 0.142 178.000 0.000 NA   NA
 840360 840361 CPS_2553 CPS_2554     FALSE 0.306 70.000 0.000 NA   NA
 840361 840362 CPS_2554 CPS_2555     FALSE 0.019 477.000 0.000 1.000   NA
 840362 840363 CPS_2555 CPS_2556     FALSE 0.143 172.000 0.000 NA   NA
 840363 840364 CPS_2556 CPS_2557     FALSE 0.012 600.000 0.000 NA   NA
 840364 840365 CPS_2557 CPS_2558     FALSE 0.225 106.000 0.017 1.000   NA
 840365 840366 CPS_2558 CPS_2559     TRUE 0.488 166.000 0.000 1.000 Y NA
 840368 840369 CPS_2561 CPS_2562     FALSE 0.325 65.000 0.000 NA   NA
 840369 840370 CPS_2562 CPS_2563     TRUE 0.972 -3.000 0.091 NA N NA
 840370 840371 CPS_2563 CPS_2564     FALSE 0.070 298.000 0.000 NA   NA
 840371 840372 CPS_2564 CPS_2565     TRUE 0.508 80.000 0.049 NA   NA
 840372 840373 CPS_2565 CPS_2566     FALSE 0.304 209.000 0.049 NA   NA
 840373 840374 CPS_2566 CPS_2567     FALSE 0.143 157.000 0.000 NA   NA
 840374 840375 CPS_2567 CPS_2568     FALSE 0.114 235.000 0.000 NA   NA
 840375 840376 CPS_2568 CPS_2569     TRUE 0.811 -9.000 0.000 NA   NA
 840376 840377 CPS_2569 CPS_2570     FALSE 0.112 238.000 0.000 NA   NA
 840377 840378 CPS_2570 CPS_2571   bar TRUE 0.744 -28.000 0.000 NA   NA
 840380 840381 CPS_2573 CPS_2574     FALSE 0.146 145.000 0.000 NA   NA
 840381 840382 CPS_2574 CPS_2575     FALSE 0.134 204.000 0.000 NA   NA
 840384 840385 CPS_2577 CPS_2578     FALSE 0.125 220.000 0.000 NA   NA
 840385 840386 CPS_2578 CPS_2579     FALSE 0.092 263.000 0.000 NA   NA
 840386 840387 CPS_2579 CPS_2580     TRUE 0.901 0.000 0.017 NA   NA
 840387 840388 CPS_2580 CPS_2581   minC FALSE 0.143 166.000 0.000 NA   NA
 840388 840389 CPS_2581 CPS_2582 minC minD TRUE 0.993 29.000 0.466 1.000 Y NA
 840389 840390 CPS_2582 CPS_2583 minD minE TRUE 0.999 2.000 0.618 NA Y NA
 840391 840392 CPS_2584 CPS_2585 ansA sppA FALSE 0.121 485.000 0.113 1.000 N NA
 840401 840402 CPS_2594 CPS_2595 bioB   TRUE 0.786 218.000 0.168 1.000 Y NA
 840402 840403 CPS_2595 CPS_2596     TRUE 0.982 0.000 0.133 1.000 N NA
 840403 840404 CPS_2596 CPS_2597   bioD FALSE 0.170 184.000 0.000 0.001 N NA
 840406 840407 CPS_2599 CPS_2600     FALSE 0.276 97.000 0.000 NA N NA
 840407 840408 CPS_2600 CPS_2601     FALSE 0.362 78.000 0.000 NA N NA
 840408 840409 CPS_2601 CPS_2602     TRUE 0.835 8.000 0.000 NA   NA
 840409 840410 CPS_2602 CPS_2603     FALSE 0.146 138.000 0.000 NA   NA
 840410 840411 CPS_2603 CPS_2604     FALSE 0.119 227.000 0.000 NA   NA
 840411 840412 CPS_2604 CPS_2605     FALSE 0.147 142.000 0.000 NA   NA
 840415 840416 CPS_2608 CPS_2609     FALSE 0.028 422.000 0.000 NA   NA
 840416 840417 CPS_2609 CPS_2610     FALSE 0.147 143.000 0.000 NA   NA
 840417 840418 CPS_2610 CPS_2611     TRUE 0.932 45.000 0.267 NA   NA
 840419 840420 CPS_2612 CPS_2613   pyrC FALSE 0.142 177.000 0.000 NA   NA
 840420 840421 CPS_2613 CPS_2614 pyrC   FALSE 0.147 132.000 0.000 NA   NA
 840421 840422 CPS_2614 CPS_2615     TRUE 0.961 -7.000 0.094 NA   NA
 840422 840423 CPS_2615 CPS_2616     TRUE 0.576 38.000 0.000 NA N NA
 840423 840424 CPS_2616 CPS_2617     TRUE 0.997 -7.000 0.630 NA   NA
 840424 840425 CPS_2617 CPS_2618     TRUE 0.999 0.000 0.933 NA   NA
 840425 840426 CPS_2618 CPS_2619   tehB FALSE 0.106 245.000 0.000 NA   NA
 840426 840427 CPS_2619 CPS_2620 tehB   FALSE 0.124 222.000 0.000 NA   NA
 840427 840428 CPS_2620 CPS_2621     FALSE 0.048 349.000 0.000 NA   NA
 840428 840429 CPS_2621 CPS_2622     TRUE 0.488 35.000 0.000 1.000   NA
 840429 840430 CPS_2622 CPS_2623     FALSE 0.404 67.000 0.000 1.000 N NA
 840430 840431 CPS_2623 CPS_2624     FALSE 0.209 95.000 0.000 NA   NA
 840431 840432 CPS_2624 CPS_2625   phbB1 FALSE 0.010 732.000 0.000 NA   NA
 840432 840433 CPS_2625 CPS_2626 phbB1   TRUE 0.811 45.000 0.000 1.000 Y NA
 840435 840436 CPS_2628 CPS_2629     FALSE 0.028 421.000 0.000 NA   NA
 840437 840438 CPS_2630 CPS_2631     TRUE 0.779 -13.000 0.000 NA   NA
 840440 840441 CPS_2633 CPS_2634     TRUE 0.983 31.000 0.500 1.000   NA
 840441 840442 CPS_2634 CPS_2635     TRUE 0.594 27.000 0.000 NA   NA
 840442 840443 CPS_2635 CPS_2636     FALSE 0.095 259.000 0.000 NA   NA
 840443 840444 CPS_2636 CPS_2637     FALSE 0.119 228.000 0.000 NA   NA
 840447 840448 CPS_2640 CPS_2641     TRUE 0.768 -16.000 0.000 NA   NA
 840448 840449 CPS_2641 CPS_2642     TRUE 0.835 8.000 0.000 NA   NA
 840450 840451 CPS_2643 CPS_2644     FALSE 0.133 207.000 0.000 NA   NA
 840451 840452 CPS_2644 CPS_2645     FALSE 0.134 202.000 0.000 NA   NA
 840452 840453 CPS_2645 CPS_2646     FALSE 0.116 226.000 0.000 1.000   NA
 840453 840454 CPS_2646 CPS_2647     FALSE 0.130 199.000 0.000 1.000   NA
 840454 840455 CPS_2647 CPS_2648     TRUE 0.978 0.000 0.017 1.000 Y NA
 840455 840456 CPS_2648 CPS_2649     TRUE 0.999 -3.000 0.667 1.000 Y NA
 840456 840457 CPS_2649 CPS_2650     TRUE 0.974 0.000 0.000 1.000 Y NA
 840457 840458 CPS_2650 CPS_2651     TRUE 0.948 64.000 0.231 0.027 Y NA
 840459 840460 CPS_2652 CPS_2653     FALSE 0.041 364.000 0.000 1.000   NA
 840460 840461 CPS_2653 CPS_2654     FALSE 0.213 85.000 0.000 0.042   NA
 840461 840462 CPS_2654 CPS_2655     FALSE 0.027 424.000 0.000 NA   NA
 840462 840463 CPS_2655 CPS_2656     FALSE 0.017 518.000 0.000 NA   NA
 840463 840464 CPS_2656 CPS_2657     TRUE 0.531 32.000 0.000 NA   NA
 840464 840465 CPS_2657 CPS_2658     FALSE 0.008 1330.000 0.000 NA   NA
 840467 840468 CPS_2660 CPS_2661     TRUE 0.448 42.000 0.000 NA   NA
 840468 840469 CPS_2661 CPS_2662     FALSE 0.236 87.000 0.000 NA   NA
 840469 840470 CPS_2662 CPS_2663     FALSE 0.030 412.000 0.000 NA   NA
 840471 840472 CPS_2664 CPS_2665     TRUE 0.974 -6.000 0.128 NA   NA
 840472 840473 CPS_2665 CPS_2666     FALSE 0.048 343.000 0.000 1.000   NA
 840473 840474 CPS_2666 CPS_2667     TRUE 0.999 10.000 0.875 NA N NA
 840476 840477 CPS_2669 CPS_2670 recX   TRUE 0.443 43.000 0.000 NA   NA
 840477 840478 CPS_2670 CPS_2671   dmpI FALSE 0.101 250.000 0.000 NA   NA
 840478 840479 CPS_2671 CPS_2672 dmpI   TRUE 0.599 51.000 0.036 NA   NA
 840479 840480 CPS_2672 CPS_2673     TRUE 0.947 79.000 0.500 NA   NA
 840482 840483 CPS_2675 CPS_2676 folK1 folX TRUE 0.978 0.000 0.018 1.000 Y NA
 840483 840484 CPS_2676 CPS_2677 folX   TRUE 0.836 -27.000 0.012 1.000 N NA
 840484 840485 CPS_2677 CPS_2678   folE2 TRUE 0.904 0.000 0.000 1.000 N NA
 840485 840486 CPS_2678 CPS_2679 folE2   FALSE 0.335 63.000 0.000 NA   NA
 840486 840487 CPS_2679 CPS_2680     FALSE 0.357 58.000 0.000 NA   NA
 840487 840488 CPS_2680 CPS_2681     FALSE 0.274 78.000 0.000 NA   NA
 840488 840489 CPS_2681 CPS_2682   umuC2 FALSE 0.143 171.000 0.000 NA   NA
 840489 840490 CPS_2682 CPS_2683 umuC2 umuD2 TRUE 0.788 -12.000 0.000 NA   NA
 840491 840492 CPS_2684 CPS_2685     TRUE 0.995 -16.000 0.330 NA Y NA
 840493 840494 CPS_2686 CPS_2687     FALSE 0.143 156.000 0.000 NA   NA
 840494 840495 CPS_2687 CPS_2688     FALSE 0.136 179.000 0.000 1.000   NA
 840495 840496 CPS_2688 CPS_2689     TRUE 0.636 23.000 0.000 NA   NA
 840498 840499 CPS_2691 CPS_2692     TRUE 0.913 9.000 0.034 1.000   NA
 840499 840500 CPS_2692 CPS_2693     TRUE 0.417 91.000 0.043 1.000   NA
 840500 840501 CPS_2693 CPS_2694     FALSE 0.050 398.000 0.000 NA N NA
 840501 840502 CPS_2694 CPS_2695     FALSE 0.279 77.000 0.000 NA   NA
 840503 840504 CPS_2696 CPS_2697   gltS TRUE 0.514 118.000 0.000 1.000 Y NA
 840504 840505 CPS_2697 CPS_2698 gltS   FALSE 0.076 287.000 0.000 NA   NA
 840505 840506 CPS_2698 CPS_2699     FALSE 0.268 79.000 0.000 NA   NA
 840507 840508 CPS_2700 CPS_2701     FALSE 0.262 312.000 0.000 0.007 Y NA
 840508 840509 CPS_2701 CPS_2702     FALSE 0.143 129.000 0.000 1.000   NA
 840509 840510 CPS_2702 CPS_2703     TRUE 0.867 18.000 0.053 1.000   NA
 840510 840511 CPS_2703 CPS_2704     FALSE 0.141 137.000 0.000 1.000   NA
 840511 840512 CPS_2704 CPS_2705     FALSE 0.147 134.000 0.000 NA   NA
 840513 840514 CPS_2706 CPS_2707     FALSE 0.021 468.000 0.000 NA   NA
 840514 840515 CPS_2707 CPS_2708     FALSE 0.121 224.000 0.000 NA   NA
 840516 840517 CPS_2709 CPS_2710     TRUE 0.831 9.000 0.000 NA   NA
 840517 840518 CPS_2710 CPS_2711     TRUE 0.709 16.000 0.000 NA   NA
 840520 840521 CPS_2713 CPS_2714     TRUE 0.997 -12.000 0.391 1.000 Y NA
 840522 840523 CPS_2715 CPS_2716 dgkA   TRUE 0.966 -27.000 0.047 1.000 Y NA
 840523 840524 CPS_2716 CPS_2717     FALSE 0.281 190.000 0.047 0.002   NA
 840526 840527 CPS_2719 CPS_2720     TRUE 0.939 15.000 0.000 1.000 Y NA
 840527 840528 CPS_2720 CPS_2721     TRUE 0.437 44.000 0.000 NA   NA
 840528 840529 CPS_2721 CPS_2722     FALSE 0.135 198.000 0.000 NA   NA
 840530 840531 CPS_2723 CPS_2724   fhuE TRUE 0.823 55.000 0.143 NA   NA
 840532 840533 CPS_2725 CPS_2727     TRUE 0.829 -7.000 0.000 NA   NA
 840533 840534 CPS_2727 CPS_2726     TRUE 0.694 -213.000 0.000 NA   NA
 840536 840537 CPS_2729 CPS_2730     TRUE 0.954 10.000 0.085 NA   NA
 840537 840538 CPS_2730 CPS_2731     TRUE 0.871 50.000 0.174 NA   NA
 840539 840540 CPS_2732 CPS_2733     FALSE 0.146 146.000 0.000 NA   NA
 840540 840541 CPS_2733 CPS_2734     FALSE 0.143 168.000 0.000 NA   NA
 840541 840542 CPS_2734 CPS_2735     FALSE 0.065 307.000 0.000 NA   NA
 840542 840543 CPS_2735 CPS_2736     FALSE 0.156 118.000 0.000 NA   NA
 840543 840544 CPS_2736 CPS_2737     FALSE 0.223 91.000 0.000 NA   NA
 840544 840545 CPS_2737 CPS_2738     FALSE 0.149 128.000 0.000 NA   NA
 840545 840546 CPS_2738 CPS_2739     FALSE 0.175 105.000 0.000 NA   NA
 840546 840547 CPS_2739 CPS_2740     FALSE 0.141 143.000 0.000 1.000   NA
 840547 840548 CPS_2740 CPS_2741     FALSE 0.143 160.000 0.000 NA   NA
 840550 840551 CPS_2743 CPS_2744     FALSE 0.264 80.000 0.000 NA   NA
 840553 840554 CPS_2746 CPS_2747     TRUE 0.651 116.000 0.048 1.000 Y NA
 840556 840557 CPS_2749 CPS_2750     FALSE 0.205 96.000 0.000 NA   NA
 840557 840558 CPS_2750 CPS_2751     FALSE 0.168 108.000 0.000 NA   NA
 840558 840559 CPS_2751 CPS_2752     FALSE 0.232 108.000 0.000 NA N NA
 840559 840560 CPS_2752 CPS_2753     FALSE 0.195 99.000 0.000 NA   NA
 840560 840561 CPS_2753 CPS_2754     FALSE 0.057 327.000 0.000 NA   NA
 840561 840562 CPS_2754 CPS_2755   serS FALSE 0.160 113.000 0.000 NA   NA
 840562 840563 CPS_2755 CPS_2756 serS crcB TRUE 0.515 78.000 0.033 NA N NA
 840563 840564 CPS_2756 CPS_2757 crcB   TRUE 0.901 -16.000 0.033 NA N NA
 840564 840565 CPS_2757 CPS_2758   lolA TRUE 0.973 -16.000 0.167 1.000 N NA
 840565 840566 CPS_2758 CPS_2759 lolA   TRUE 0.812 140.000 0.305 1.000 N NA
 840566 840567 CPS_2759 CPS_2760   lrp TRUE 0.765 262.000 0.345 1.000 N NA
 840568 840569 CPS_2761 CPS_2762 ald trxB FALSE 0.040 461.000 0.018 0.047 N NA
 840569 840570 CPS_2762 CPS_2763 trxB aat TRUE 0.773 81.000 0.046 1.000 Y NA
 840570 840571 CPS_2763 CPS_2764 aat   TRUE 0.956 70.000 0.285 1.000 Y NA
 840571 840572 CPS_2764 CPS_2765   infA TRUE 0.465 131.000 0.078 1.000 N NA
 840573 840574 CPS_2766 CPS_2767   recD FALSE 0.178 104.000 0.000 NA   NA
 840574 840575 CPS_2767 CPS_2768 recD recB TRUE 0.999 2.000 0.688 0.001 Y NA
 840575 840576 CPS_2768 CPS_2769 recB recC TRUE 0.999 0.000 0.542 0.001 Y NA
 840577 840578 CPS_2770 CPS_2771     FALSE 0.141 180.000 0.000 NA   NA
 840578 840579 CPS_2771 CPS_2772     TRUE 0.841 -6.000 0.000 NA   NA
 840579 840580 CPS_2772 CPS_2773     TRUE 0.754 -22.000 0.000 NA   NA
 840580 840581 CPS_2773 CPS_2774     TRUE 0.832 -12.000 0.000 0.052 N NA
 840582 840583 CPS_2775 CPS_2776     FALSE 0.131 210.000 0.000 NA   NA
 840583 840584 CPS_2776 CPS_2777     TRUE 0.997 -30.000 0.727 NA   NA
 840584 840585 CPS_2777 CPS_2778     TRUE 0.995 19.000 0.739 NA   NA
 840585 840586 CPS_2778 CPS_2779   aroG FALSE 0.156 112.000 0.000 1.000   NA
 840586 840587 CPS_2779 CPS_2780 aroG   FALSE 0.015 556.000 0.000 NA   NA
 840589 840590 CPS_2782 CPS_2783     TRUE 0.978 0.000 0.125 NA   NA
 840590 840591 CPS_2783 CPS_2784     TRUE 0.923 -10.000 0.050 NA   NA
 840591 840592 CPS_2784 CPS_2785     TRUE 0.992 2.000 0.286 NA   NA
 840592 840593 CPS_2785 CPS_2786     TRUE 0.994 67.000 0.875 1.000 Y NA
 840593 840594 CPS_2786 CPS_2787     TRUE 0.951 9.000 0.057 1.000 N NA
 840594 840595 CPS_2787 CPS_2788     TRUE 0.980 40.000 0.543 NA   NA
 840595 840596 CPS_2788 CPS_2789     TRUE 0.997 0.000 0.568 NA   NA
 840596 840597 CPS_2789 CPS_2790     TRUE 0.976 47.000 0.541 NA   NA
 840598 840599 CPS_2791 CPS_2792     FALSE 0.038 380.000 0.000 NA   NA
 840604 840605 CPS_2797 CPS_2798     TRUE 0.916 107.000 0.519 NA   NA
 840605 840606 CPS_2798 CPS_2799     FALSE 0.099 252.000 0.000 NA   NA
 840606 840607 CPS_2799 CPS_2800   pyrD FALSE 0.200 140.000 0.000 1.000 N NA
 840609 840610 CPS_2802 CPS_2803     FALSE 0.018 498.000 0.000 1.000   NA
 840610 840611 CPS_2803 CPS_2804     TRUE 0.956 61.000 0.455 NA   NA
 840611 840612 CPS_2804 CPS_2805     TRUE 0.894 130.000 0.500 NA   NA
 840612 840613 CPS_2805 CPS_2806     TRUE 0.992 28.000 0.710 NA   NA
 840613 840614 CPS_2806 CPS_2807     FALSE 0.038 378.000 0.000 NA   NA
 840614 840615 CPS_2807 CPS_2808   pepN TRUE 0.613 90.000 0.099 NA   NA
 840615 840616 CPS_2808 CPS_2809 pepN nhaC2 TRUE 0.783 28.000 0.031 1.000 N NA
 840616 840617 CPS_2809 CPS_2810 nhaC2 prc FALSE 0.331 96.000 0.017 1.000 N NA
 840617 840618 CPS_2810 CPS_2811 prc proQ TRUE 0.884 88.000 0.304 1.000 N NA
 840618 840619 CPS_2811 CPS_2812 proQ   FALSE 0.236 112.000 0.023 NA   NA
 840619 840620 CPS_2812 CPS_2813     TRUE 0.453 44.000 0.007 NA   NA
 840620 840621 CPS_2813 CPS_2814     FALSE 0.154 117.000 0.005 NA   NA
 840621 840622 CPS_2814 CPS_2815     FALSE 0.138 185.000 0.000 NA   NA
 840623 840624 CPS_2816 CPS_2817     TRUE 0.999 11.000 0.833 NA N NA
 840624 840625 CPS_2817 CPS_2818     TRUE 0.478 509.000 0.286 NA Y NA
 840626 840627 CPS_2819 CPS_2820 prpF   TRUE 0.971 84.000 0.733 NA   NA
 840627 840628 CPS_2820 CPS_2821     TRUE 0.515 471.000 0.289 1.000 Y NA
 840628 840629 CPS_2821 CPS_2822     TRUE 0.981 38.000 0.502 1.000 N NA
 840629 840630 CPS_2822 CPS_2823     TRUE 0.962 14.000 0.130 1.000 N NA
 840630 840631 CPS_2823 CPS_2824     FALSE 0.018 486.000 0.000 1.000   NA
 840631 840632 CPS_2824 CPS_2825     FALSE 0.240 86.000 0.000 NA   NA
 840632 840633 CPS_2825 CPS_2826     FALSE 0.248 84.000 0.000 NA   NA
 840633 840634 CPS_2826 CPS_2827     FALSE 0.344 59.000 0.000 1.000   NA
 840634 840635 CPS_2827 CPS_2828     FALSE 0.019 496.000 0.000 NA   NA
 840635 840636 CPS_2828 CPS_2829     FALSE 0.130 213.000 0.000 NA   NA
 840636 840637 CPS_2829 CPS_2830     FALSE 0.219 92.000 0.000 NA   NA
 840637 840638 CPS_2830 CPS_2831     FALSE 0.223 91.000 0.000 NA   NA
 840638 840639 CPS_2831 CPS_2832     FALSE 0.223 91.000 0.000 NA   NA
 840639 840640 CPS_2832 CPS_2833     FALSE 0.130 213.000 0.000 NA   NA
 840640 840641 CPS_2833 CPS_2834     FALSE 0.178 104.000 0.000 NA   NA
 840642 840643 CPS_2835 CPS_2836     TRUE 0.684 18.000 0.000 NA   NA
 840644 840645 CPS_2837 CPS_2838 dcd   TRUE 0.758 28.000 0.025 1.000 N NA
 840646 840647 CPS_2839 CPS_2840 metG   FALSE 0.143 164.000 0.000 NA   NA
 840647 840648 CPS_2840 CPS_2841     TRUE 0.862 2.000 0.000 NA   NA
 840648 840649 CPS_2841 CPS_2842     FALSE 0.349 60.000 0.000 NA   NA
 840650 840651 CPS_2843 CPS_2844     TRUE 0.968 7.000 0.114 NA   NA
 840651 840652 CPS_2844 CPS_2845     FALSE 0.087 269.000 0.000 NA   NA
 840652 840653 CPS_2845 CPS_2846   slyD1 FALSE 0.141 180.000 0.000 NA   NA
 840653 840654 CPS_2846 CPS_2847 slyD1   FALSE 0.143 157.000 0.000 NA   NA
 840654 840655 CPS_2847 CPS_2848   sbcC FALSE 0.411 49.000 0.000 NA   NA
 840655 840656 CPS_2848 CPS_2849 sbcC sbcD TRUE 0.998 -3.000 0.669 0.001 N NA
 840656 840657 CPS_2849 CPS_2850 sbcD   FALSE 0.199 146.000 0.000 1.000 N NA
 840659 840660 CPS_2852 CPS_2853     FALSE 0.147 132.000 0.000 NA   NA
 840660 840661 CPS_2853 CPS_2854     TRUE 0.997 -7.000 0.651 NA   NA
 840661 840662 CPS_2854 CPS_2855     TRUE 0.981 48.000 0.581 NA N NA
 840662 840663 CPS_2855 CPS_2856     FALSE 0.138 186.000 0.000 NA   NA
 840663 840664 CPS_2856 CPS_2857     TRUE 0.430 45.000 0.000 NA   NA
 840664 840665 CPS_2857 CPS_2858     TRUE 0.989 -69.000 0.429 0.043   NA
 840667 840668 CPS_2860 CPS_2861     FALSE 0.147 131.000 0.000 NA   NA
 840668 840669 CPS_2861 CPS_2862     TRUE 0.811 -9.000 0.000 NA   NA
 840671 840672 CPS_2864 CPS_2865     FALSE 0.153 122.000 0.000 NA   NA
 840672 840673 CPS_2865 CPS_2866     FALSE 0.144 154.000 0.000 NA   NA
 840673 840674 CPS_2866 CPS_2867     FALSE 0.052 394.000 0.000 NA N NA
 840674 840675 CPS_2867 CPS_2868     TRUE 0.976 15.000 0.208 1.000 N NA
 840675 840676 CPS_2868 CPS_2869     TRUE 0.737 64.000 0.000 1.000 Y NA
 840676 840677 CPS_2869 CPS_2870     FALSE 0.076 287.000 0.000 NA   NA
 840677 840678 CPS_2870 CPS_2871     FALSE 0.111 239.000 0.000 NA   NA
 840680 840681 CPS_2873 CPS_2874     TRUE 0.844 -12.000 0.000 1.000 N NA
 840681 840682 CPS_2874 CPS_2875     FALSE 0.290 92.000 0.000 1.000 N NA
 840682 840683 CPS_2875 CPS_2876     TRUE 0.990 5.000 0.262 1.000   NA
 840683 840684 CPS_2876 CPS_2877     TRUE 0.779 -13.000 0.000 NA   NA
 840684 840685 CPS_2877 CPS_2878     FALSE 0.013 582.000 0.000 NA   NA
 840687 840688 CPS_2880 CPS_2881     TRUE 0.910 11.000 0.040 NA   NA
 840691 840692 CPS_2884 CPS_2885     TRUE 0.829 -7.000 0.000 NA   NA
 840692 840693 CPS_2885 CPS_2886     FALSE 0.029 419.000 0.000 NA   NA
 840694 840695 CPS_2887 CPS_2888 uvrB   TRUE 0.906 -3.000 0.010 1.000 N NA
 840696 840697 CPS_2889 CPS_2890     TRUE 0.453 41.000 0.000 NA   NA
 840697 840698 CPS_2890 CPS_2891     TRUE 0.453 41.000 0.000 NA   NA
 840698 840699 CPS_2891 CPS_2892     TRUE 0.453 41.000 0.000 NA   NA
 840700 840701 CPS_2893 CPS_2894 clpA   TRUE 0.992 21.000 0.596 NA   NA
 840703 840704 CPS_2896 CPS_2897 icd   FALSE 0.409 242.000 0.010 0.001 Y NA
 840705 840706 CPS_2898 CPS_2899 rluE   TRUE 0.980 -10.000 0.182 1.000 N NA
 840706 840707 CPS_2899 CPS_2900   trmU TRUE 0.760 87.000 0.158 1.000 N NA
 840707 840708 CPS_2900 CPS_2901 trmU   TRUE 0.836 64.000 0.180 NA   NA
 840708 840709 CPS_2901 CPS_2902   purB TRUE 0.679 74.000 0.093 NA   NA
 840712 840713 CPS_2905 CPS_2906 purC rplT FALSE 0.152 240.000 0.000 1.000 N NA
 840713 840714 CPS_2906 CPS_2907 rplT rpmI TRUE 0.999 17.000 0.928 0.010 Y NA
 840714 840715 CPS_2907 CPS_2908 rpmI infC TRUE 0.978 100.000 0.652 1.000 Y NA
 840715 840716 CPS_2908 CPS_2909 infC thrS TRUE 0.839 122.000 0.186 1.000 Y NA
 840719 840720 CPS_2912 CPS_2913     FALSE 0.300 90.000 0.000 1.000 N NA
 840720 840721 CPS_2913 CPS_2914     FALSE 0.266 142.000 0.033 NA   NA
 840721 840722 CPS_2914 CPS_2915   norM FALSE 0.143 166.000 0.000 NA   NA
 840722 840723 CPS_2915 CPS_2916 norM   FALSE 0.150 127.000 0.000 NA   NA
 840723 840724 CPS_2916 CPS_2917     FALSE 0.143 166.000 0.000 NA   NA
 840725 840726 CPS_2918 CPS_2919     TRUE 0.841 6.000 0.000 NA   NA
 840726 840727 CPS_2919 CPS_2920     TRUE 0.749 -25.000 0.000 NA   NA
 840727 840728 CPS_2920 CPS_2921     FALSE 0.151 118.000 0.000 1.000   NA
 840728 840729 CPS_2921 CPS_2922     TRUE 0.904 0.000 0.000 1.000 N NA
 840729 840730 CPS_2922 CPS_2923     TRUE 0.823 -7.000 0.000 1.000   NA
 840730 840731 CPS_2923 CPS_2924     TRUE 0.761 -19.000 0.000 NA   NA
 840731 840732 CPS_2924 CPS_2925     TRUE 0.854 -3.000 0.000 NA   NA
 840733 840734 CPS_2926 CPS_2927     TRUE 0.850 4.000 0.000 NA   NA
 840735 840736 CPS_2928 CPS_2929     FALSE 0.043 357.000 0.000 1.000   NA
 840736 840737 CPS_2929 CPS_2930   folE3 FALSE 0.410 47.000 0.000 1.000   NA
 840737 840738 CPS_2930 CPS_2931 folE3   TRUE 0.650 21.000 0.000 NA   NA
 840738 840739 CPS_2931 CPS_2932     TRUE 0.729 15.000 0.000 NA   NA
 840740 840741 CPS_2933 CPS_2934     TRUE 0.857 3.000 0.000 NA   NA
 840741 840742 CPS_2934 CPS_2935     TRUE 0.958 35.000 0.312 NA   NA
 840742 840743 CPS_2935 CPS_2936     TRUE 0.996 0.000 0.438 NA   NA
 840743 840744 CPS_2936 CPS_2937     TRUE 0.650 21.000 0.000 NA   NA
 840745 840746 CPS_2938 CPS_2939     TRUE 0.498 35.000 0.000 NA   NA
 840746 840747 CPS_2939 CPS_2940     TRUE 0.997 -22.000 0.750 NA   NA
 840747 840748 CPS_2940 CPS_2941     TRUE 0.998 -3.000 0.750 NA   NA
 840748 840749 CPS_2941 CPS_2942     TRUE 0.986 27.000 0.500 NA   NA
 840749 840750 CPS_2942 CPS_2943     TRUE 0.998 -3.000 0.667 NA   NA
 840750 840751 CPS_2943 CPS_2944     TRUE 0.999 0.000 0.833 NA   NA
 840751 840752 CPS_2944 CPS_2945     TRUE 0.811 -9.000 0.000 NA   NA
 840752 840753 CPS_2945 CPS_2946     TRUE 0.848 0.000 0.000 0.081   NA
 840753 840754 CPS_2946 CPS_2947     FALSE 0.119 222.000 0.000 1.000   NA
 840754 840755 CPS_2947 CPS_2948     FALSE 0.083 277.000 0.000 NA   NA
 840758 840759 CPS_2951 CPS_2952     FALSE 0.140 183.000 0.000 NA   NA
 840759 840760 CPS_2952 CPS_2953     TRUE 0.945 51.000 0.333 NA   NA
 840761 840762 CPS_2954 CPS_2955     FALSE 0.097 255.000 0.000 NA   NA
 840762 840763 CPS_2955 CPS_2956     FALSE 0.248 84.000 0.000 NA   NA
 840765 840766 CPS_2958 CPS_2959     TRUE 0.983 -69.000 0.167 0.043 Y NA
 840766 840767 CPS_2959 CPS_2960     FALSE 0.236 87.000 0.000 NA   NA
 840767 840768 CPS_2960 CPS_2961     FALSE 0.148 130.000 0.000 NA   NA
 840768 840769 CPS_2961 CPS_2962     FALSE 0.156 118.000 0.000 NA   NA
 840769 840770 CPS_2962 CPS_2963     TRUE 0.989 -69.000 0.429 0.043   NA
 840770 840771 CPS_2963 CPS_2964     FALSE 0.299 73.000 0.000 NA   NA
 840777 840778 CPS_2970 CPS_2971     FALSE 0.132 434.000 0.000 1.000 Y NA
 840782 840783 CPS_2975 CPS_2976     TRUE 0.974 25.000 0.313 NA   NA
 840783 840784 CPS_2976 CPS_2977     TRUE 0.455 133.000 0.091 NA   NA
 840784 840785 CPS_2977 CPS_2978     FALSE 0.192 100.000 0.000 NA   NA
 840785 840786 CPS_2978 CPS_2979     FALSE 0.143 159.000 0.000 NA   NA
 840786 840787 CPS_2979 CPS_2980     FALSE 0.357 58.000 0.000 NA   NA
 840787 840788 CPS_2980 CPS_2981     FALSE 0.096 251.000 0.000 1.000   NA
 840788 840789 CPS_2981 CPS_2982     FALSE 0.072 290.000 0.000 1.000   NA
 840790 840791 CPS_2983 CPS_2984     FALSE 0.283 300.000 0.000 0.001 Y NA
 840791 840792 CPS_2984 CPS_2985     FALSE 0.386 245.000 0.000 0.001 Y NA
 840792 840793 CPS_2985 CPS_2986     FALSE 0.134 203.000 0.000 NA   NA
 840793 840794 CPS_2986 CPS_2987     TRUE 0.865 1.000 0.000 NA   NA
 840794 840795 CPS_2987 CPS_2988     FALSE 0.226 88.000 0.000 1.000   NA
 840795 840796 CPS_2988 CPS_2989     TRUE 0.999 10.000 1.000 NA   NA
 840796 840797 CPS_2989 CPS_2990     TRUE 0.854 -3.000 0.000 NA   NA
 840797 840798 CPS_2990 CPS_2991     TRUE 0.854 -3.000 0.000 NA   NA
 840798 840799 CPS_2991 CPS_2992     TRUE 0.854 -3.000 0.000 NA   NA
 840799 840800 CPS_2992 CPS_2993     TRUE 0.829 -7.000 0.000 NA   NA
 840801 840802 CPS_2994 CPS_2995 ihfA pheT TRUE 0.989 4.000 0.208 1.000 N NA
 840802 840803 CPS_2995 CPS_2996 pheT pheS TRUE 0.998 12.000 0.574 0.000 Y NA
 840803 840804 CPS_2996 CPS_2997 pheS   FALSE 0.045 356.000 0.000 NA   NA
 840804 840805 CPS_2997 CPS_2998     FALSE 0.159 115.000 0.000 NA   NA
 840805 840806 CPS_2998 CPS_2999     TRUE 0.768 -16.000 0.000 NA   NA
 840806 840807 CPS_2999 CPS_3000     TRUE 0.507 34.000 0.000 NA   NA
 840807 840808 CPS_3000 CPS_3001     TRUE 0.831 9.000 0.000 NA   NA
 840808 840809 CPS_3001 CPS_3002     FALSE 0.274 78.000 0.000 NA   NA
 840809 840810 CPS_3002 CPS_3003     TRUE 0.498 35.000 0.000 NA   NA
 840811 840812 CPS_3004 CPS_3005     TRUE 0.884 27.000 0.095 NA   NA
 840812 840813 CPS_3005 CPS_3006     TRUE 0.987 26.000 0.500 NA   NA
 840813 840814 CPS_3006 CPS_3007     TRUE 0.747 -13.000 0.000 0.026   NA
 840814 840815 CPS_3007 CPS_3008     TRUE 0.867 0.000 0.000 NA   NA
 840815 840816 CPS_3008 CPS_3009     TRUE 0.829 -7.000 0.000 NA   NA
 840816 840817 CPS_3009 CPS_3010     TRUE 0.994 -12.000 0.488 NA   NA
 840819 840820 CPS_3012 CPS_3013     FALSE 0.033 399.000 0.000 NA   NA
 840820 840821 CPS_3013 CPS_3014   aroH TRUE 0.572 214.000 0.165 1.000   NA
 840824 840825 CPS_3017 CPS_3018     TRUE 0.829 -7.000 0.000 NA   NA
 840825 840826 CPS_3018 CPS_3019     FALSE 0.150 126.000 0.000 NA   NA
 840826 840827 CPS_3019 CPS_3020     FALSE 0.213 94.000 0.000 NA   NA
 840827 840828 CPS_3020 CPS_3021     FALSE 0.118 231.000 0.000 NA   NA
 840828 840829 CPS_3021 CPS_3022     FALSE 0.188 101.000 0.000 NA   NA
 840829 840830 CPS_3022 CPS_3023     FALSE 0.318 67.000 0.000 NA   NA
 840833 840834 CPS_3026 CPS_3027 ptrB1   FALSE 0.148 129.000 0.000 NA   NA
 840834 840835 CPS_3027 CPS_3028     FALSE 0.078 284.000 0.000 NA   NA
 840836 840837 CPS_3029 CPS_3030     TRUE 0.998 3.000 0.667 NA   NA
 840837 840838 CPS_3030 CPS_3031     FALSE 0.181 103.000 0.000 NA   NA
 840838 840839 CPS_3031 CPS_3032     FALSE 0.088 268.000 0.000 NA   NA
 840840 840841 CPS_3033 CPS_3034     FALSE 0.013 594.000 0.000 NA   NA
 840841 840842 CPS_3034 CPS_3035     TRUE 0.739 -31.000 0.000 NA   NA
 840844 840845 CPS_3037 CPS_3038     TRUE 0.458 40.000 0.000 NA   NA
 840845 840846 CPS_3038 CPS_3039     FALSE 0.036 389.000 0.000 NA   NA
 840846 840847 CPS_3039 CPS_3040     FALSE 0.068 301.000 0.000 NA   NA
 840847 840848 CPS_3040 CPS_3041     TRUE 0.671 19.000 0.000 NA   NA
 840849 840850 CPS_3042 CPS_3043   tatC2 TRUE 0.879 -7.000 0.000 NA N NA
 840850 840851 CPS_3043 CPS_3044 tatC2 tatB2 TRUE 0.998 0.000 0.333 NA Y NA
 840851 840852 CPS_3044 CPS_3045 tatB2 tatA2 TRUE 0.970 4.000 0.000 1.000 Y NA
 840853 840854 CPS_3046 CPS_3047     FALSE 0.140 183.000 0.000 NA   NA
 840855 840856 CPS_3048 CPS_3049 acoR   TRUE 0.433 73.000 0.012 NA N NA
 840856 840857 CPS_3049 CPS_3050     TRUE 0.747 14.000 0.000 NA   NA
 840857 840858 CPS_3050 CPS_3051   acoB TRUE 0.865 1.000 0.000 NA   NA
 840858 840859 CPS_3051 CPS_3052 acoB acoA TRUE 0.997 27.000 0.698 0.001 Y NA
 840859 840860 CPS_3052 CPS_3053 acoA   TRUE 0.547 102.000 0.083 1.000 N NA
 840860 840861 CPS_3053 CPS_3054     TRUE 0.990 57.000 0.972 NA   NA
 840863 840864 CPS_3056 CPS_3057     FALSE 0.344 113.000 0.047 NA   NA
 840865 840866 CPS_3058 CPS_3059     FALSE 0.010 678.000 0.000 NA   NA
 840869 840870 CPS_3062 CPS_3063     FALSE 0.290 75.000 0.000 NA   NA
 840870 840871 CPS_3063 CPS_3064     FALSE 0.260 81.000 0.000 NA   NA
 840872 840873 CPS_3065 CPS_3066     TRUE 0.997 -7.000 0.364 1.000 Y NA
 840874 840875 CPS_3067 CPS_3068     FALSE 0.052 337.000 0.000 NA   NA
 840875 840876 CPS_3068 CPS_3069     TRUE 0.879 36.000 0.030 0.002 Y NA
 840876 840877 CPS_3069 CPS_3070   msrB2 TRUE 0.998 -3.000 0.404 0.002 Y NA
 840877 840878 CPS_3070 CPS_3071 msrB2   TRUE 0.471 54.000 0.000 1.000 N NA
 840878 840879 CPS_3071 CPS_3072     FALSE 0.339 62.000 0.000 NA   NA
 840882 840883 CPS_3075 CPS_3076     FALSE 0.306 70.000 0.000 NA   NA
 840883 840884 CPS_3076 CPS_3077     TRUE 0.998 -10.000 0.819 NA   NA
 840884 840885 CPS_3077 CPS_3078     TRUE 0.729 63.000 0.099 NA   NA
 840885 840886 CPS_3078 CPS_3079     FALSE 0.141 180.000 0.000 NA   NA
 840887 840888 CPS_3080 CPS_3081     FALSE 0.012 605.000 0.000 NA   NA
 840890 840891 CPS_3083 CPS_3084     TRUE 0.996 -3.000 0.411 0.079 N NA
 840891 840892 CPS_3084 CPS_3085     FALSE 0.035 448.000 0.000 1.000 N NA
 840892 840893 CPS_3085 CPS_3086     FALSE 0.046 404.000 0.000 1.000 N NA
 840894 840895 CPS_3087 CPS_3088     FALSE 0.038 380.000 0.000 NA   NA
 840899 840900 CPS_3092 CPS_3093     FALSE 0.252 83.000 0.000 NA   NA
 840900 840901 CPS_3093 CPS_3094     FALSE 0.168 108.000 0.000 NA   NA
 840901 840902 CPS_3094 CPS_3095     FALSE 0.061 315.000 0.000 NA   NA
 840902 840903 CPS_3095 CPS_3096     FALSE 0.024 450.000 0.000 NA   NA
 840903 840904 CPS_3096 CPS_3097     FALSE 0.325 65.000 0.000 NA   NA
 840905 840906 CPS_3098 CPS_3099   pfaD TRUE 0.607 26.000 0.000 NA   NA
 840906 840907 CPS_3099 CPS_3100 pfaD   FALSE 0.100 251.000 0.000 NA   NA
 840907 840908 CPS_3100 CPS_3101     FALSE 0.227 90.000 0.000 NA   NA
 840908 840909 CPS_3101 CPS_3102   pfaC FALSE 0.173 191.000 0.000 0.036 N NA
 840909 840910 CPS_3102 CPS_3103 pfaC pfaB FALSE 0.217 292.000 0.071 0.011   NA
 840910 840911 CPS_3103 CPS_3104 pfaB pfaA TRUE 0.986 0.000 0.190 0.003   NA
 840911 840912 CPS_3104 CPS_3105 pfaA   TRUE 0.979 64.000 0.714 NA   NA
 840915 840916 CPS_3108 CPS_3109     TRUE 0.531 32.000 0.000 NA   NA
 840916 840917 CPS_3109 CPS_3110     TRUE 0.437 44.000 0.000 NA   NA
 840917 840918 CPS_3110 CPS_3111     TRUE 0.609 91.000 0.000 0.028 Y NA
 840918 840919 CPS_3111 CPS_3112     FALSE 0.146 145.000 0.000 NA   NA
 840919 840920 CPS_3112 CPS_3113     FALSE 0.142 174.000 0.000 NA   NA
 840920 840921 CPS_3113 CPS_3114     FALSE 0.153 122.000 0.000 NA   NA
 840921 840922 CPS_3114 CPS_3115     FALSE 0.146 124.000 0.000 1.000   NA
 840922 840923 CPS_3115 CPS_3116     FALSE 0.144 128.000 0.000 1.000   NA
 840923 840924 CPS_3116 CPS_3117     FALSE 0.137 191.000 0.000 NA   NA
 840924 840925 CPS_3117 CPS_3118     FALSE 0.252 83.000 0.000 NA   NA
 840925 840926 CPS_3118 CPS_3119     FALSE 0.148 130.000 0.000 NA   NA
 840926 840927 CPS_3119 CPS_3120     TRUE 0.800 -10.000 0.000 NA   NA
 840927 840928 CPS_3120 CPS_3121     FALSE 0.268 79.000 0.000 NA   NA
 840928 840929 CPS_3121 CPS_3122     TRUE 0.989 -69.000 0.429 0.042   NA
 840931 840932 CPS_3124 CPS_3125     FALSE 0.147 131.000 0.000 NA   NA
 840932 840933 CPS_3125 CPS_3126     FALSE 0.161 112.000 0.000 NA   NA
 840933 840934 CPS_3126 CPS_3127     FALSE 0.379 54.000 0.000 NA   NA
 840934 840935 CPS_3127 CPS_3128     FALSE 0.155 119.000 0.000 NA   NA
 840935 840936 CPS_3128 CPS_3129     FALSE 0.294 74.000 0.000 NA   NA
 840936 840937 CPS_3129 CPS_3130   dehII FALSE 0.149 107.000 0.000 0.054   NA
 840937 840938 CPS_3130 CPS_3131 dehII   FALSE 0.147 134.000 0.000 NA   NA
 840938 840939 CPS_3131 CPS_3132     FALSE 0.151 125.000 0.000 NA   NA
 840939 840940 CPS_3132 CPS_3133   folD1 FALSE 0.147 141.000 0.000 NA   NA
 840940 840941 CPS_3133 CPS_3134 folD1   FALSE 0.153 122.000 0.000 NA   NA
 840941 840942 CPS_3134 CPS_3135     FALSE 0.155 120.000 0.000 NA   NA
 840942 840943 CPS_3135 CPS_3136     FALSE 0.019 485.000 0.000 NA   NA
 840943 840944 CPS_3136 CPS_3137     FALSE 0.302 72.000 0.000 NA   NA
 840944 840945 CPS_3137 CPS_3138     TRUE 0.718 23.000 0.000 1.000 N NA
 840945 840946 CPS_3138 CPS_3139     TRUE 0.771 85.000 0.183 1.000   NA
 840946 840947 CPS_3139 CPS_3140     FALSE 0.151 125.000 0.000 NA   NA
 840947 840948 CPS_3140 CPS_3141     TRUE 0.758 -21.000 0.000 NA   NA
 840948 840949 CPS_3141 CPS_3142     TRUE 0.800 -10.000 0.000 NA   NA
 840949 840950 CPS_3142 CPS_3143     FALSE 0.152 117.000 0.000 1.000   NA
 840950 840951 CPS_3143 CPS_3144     FALSE 0.335 63.000 0.000 NA   NA
 840951 840952 CPS_3144 CPS_3145     FALSE 0.104 247.000 0.000 NA   NA
 840952 840953 CPS_3145 CPS_3146     FALSE 0.137 191.000 0.000 NA   NA
 840953 840954 CPS_3146 CPS_3147     FALSE 0.195 99.000 0.000 NA   NA
 840955 840956 CPS_3148 CPS_3149     FALSE 0.268 79.000 0.000 NA   NA
 840956 840957 CPS_3149 CPS_3150   aroC TRUE 0.453 94.000 0.055 1.000   NA
 840957 840958 CPS_3150 CPS_3151 aroC   TRUE 0.471 141.000 0.081 1.000 N NA
 840959 840960 CPS_3152 CPS_3153     FALSE 0.233 88.000 0.000 NA   NA
 840963 840964 CPS_3156 CPS_3157 fadJ fadI TRUE 0.976 69.000 0.430 1.000 Y NA
 840964 840965 CPS_3157 CPS_3158 fadI   FALSE 0.114 235.000 0.000 NA   NA
 840966 840967 CPS_3159 CPS_3160     TRUE 0.974 45.000 0.500 NA   NA
 840967 840968 CPS_3160 CPS_3161     TRUE 0.998 0.000 0.738 NA   NA
 840968 840969 CPS_3161 CPS_3162     TRUE 0.854 -3.000 0.000 NA   NA
 840969 840970 CPS_3162 CPS_3163     TRUE 0.862 2.000 0.000 NA   NA
 840970 840971 CPS_3163 CPS_3164     TRUE 0.691 68.000 0.091 NA   NA
 840971 840972 CPS_3164 CPS_3165     TRUE 0.869 139.000 0.432 NA   NA
 840972 840973 CPS_3165 CPS_3166     TRUE 0.829 -7.000 0.000 NA   NA
 840976 840977 CPS_3169 CPS_3170     FALSE 0.135 200.000 0.000 NA   NA
 840980 840981 CPS_3173 CPS_3174 xth rrmA TRUE 0.762 13.000 0.000 1.000   NA
 840983 840984 CPS_3176 CPS_3177 ackA pta TRUE 0.957 83.000 0.600 1.000   NA
 840984 840985 CPS_3177 CPS_3178 pta   FALSE 0.013 572.000 0.000 1.000   NA
 840985 840986 CPS_3178 CPS_3179   dapE TRUE 0.931 57.000 0.292 1.000 N NA
 840986 840987 CPS_3179 CPS_3180 dapE   TRUE 0.949 21.000 0.163 0.031 N NA
 840987 840988 CPS_3180 CPS_3181     FALSE 0.349 60.000 0.000 NA   NA
 840989 840990 CPS_3182 CPS_3183     TRUE 0.650 21.000 0.000 NA   NA
 840990 840991 CPS_3183 CPS_3184     TRUE 0.719 -63.000 0.000 NA   NA
 840992 840993 CPS_3185 CPS_3186 gcvR bcp TRUE 0.506 193.000 0.102 1.000 N NA
 840994 840995 CPS_3187 CPS_3188     TRUE 0.972 14.000 0.190 NA   NA
 840996 840997 CPS_3189 CPS_3190     FALSE 0.410 69.000 0.021 NA   NA
 840997 840998 CPS_3190 CPS_3191   arsC TRUE 0.860 80.000 0.259 1.000   NA
 840998 840999 CPS_3191 CPS_3192 arsC   TRUE 0.841 45.000 0.127 NA   NA
 840999 841000 CPS_3192 CPS_3193     FALSE 0.065 306.000 0.000 NA   NA
 841001 841002 CPS_3194 CPS_3195     TRUE 0.983 -3.000 0.174 NA   NA
 841003 841004 CPS_3196 CPS_3197 purM purN TRUE 0.871 119.000 0.230 0.002 Y NA
 841004 841005 CPS_3197 CPS_3198 purN   FALSE 0.215 213.000 0.027 NA   NA
 841006 841007 CPS_3199 CPS_3200     TRUE 0.800 -10.000 0.000 NA   NA
 841010 841011 CPS_3203 CPS_3204     FALSE 0.134 183.000 0.000 1.000   NA
 841011 841012 CPS_3204 CPS_3205     FALSE 0.216 91.000 0.000 1.000   NA
 841014 841015 CPS_3207 CPS_3208     FALSE 0.015 555.000 0.000 NA   NA
 841016 841017 CPS_3209 CPS_3210     TRUE 0.834 22.000 0.048 NA   NA
 841017 841018 CPS_3210 CPS_3211     TRUE 0.990 20.000 0.500 NA   NA
 841019 841020 CPS_3212 CPS_3213     FALSE 0.011 654.000 0.000 NA   NA
 841020 841021 CPS_3213 CPS_3214     FALSE 0.012 613.000 0.000 NA   NA
 841022 841023 CPS_3215 CPS_3216   gltX TRUE 0.765 55.000 0.000 0.078 Y NA
 841025 841026 CPS_3218 CPS_3219     TRUE 0.531 32.000 0.000 NA   NA
 841026 841027 CPS_3219 CPS_3220     FALSE 0.168 108.000 0.000 NA   NA
 841027 841028 CPS_3220 CPS_3221     FALSE 0.168 108.000 0.000 NA   NA
 841028 841029 CPS_3221 CPS_3222     FALSE 0.165 109.000 0.000 NA   NA
 841029 841030 CPS_3222 CPS_3223     FALSE 0.175 105.000 0.000 NA   NA
 841030 841031 CPS_3223 CPS_3224     FALSE 0.143 165.000 0.000 NA   NA
 841031 841032 CPS_3224 CPS_3225     TRUE 0.650 21.000 0.000 NA   NA
 841032 841033 CPS_3225 CPS_3226     FALSE 0.159 114.000 0.000 NA   NA
 841034 841035 CPS_3227 CPS_3228     TRUE 0.596 26.000 0.000 1.000   NA
 841037 841038 CPS_3230 CPS_3231 proS   FALSE 0.132 209.000 0.000 NA   NA
 841038 841039 CPS_3231 CPS_3232     FALSE 0.161 112.000 0.000 NA   NA
 841039 841040 CPS_3232 CPS_3233     TRUE 0.906 23.000 0.104 1.000   NA
 841042 841043 CPS_3235 CPS_3236   ilvI FALSE 0.147 141.000 0.000 NA   NA
 841043 841044 CPS_3236 CPS_3237 ilvI ilvH TRUE 0.998 0.000 0.371 0.001 Y NA
 841045 841046 CPS_3238 CPS_3239     FALSE 0.264 80.000 0.000 NA   NA
 841046 841047 CPS_3239 CPS_3240   glnS FALSE 0.195 166.000 0.000 1.000 N NA
 841047 841048 CPS_3240 CPS_3241 glnS   FALSE 0.126 265.000 0.000 1.000 N NA
 841048 841049 CPS_3241 CPS_3242     FALSE 0.136 196.000 0.000 NA   NA
 841049 841050 CPS_3242 CPS_3243     FALSE 0.216 93.000 0.000 NA   NA
 841050 841051 CPS_3243 CPS_3244     TRUE 0.912 14.000 0.067 NA   NA
 841051 841052 CPS_3244 CPS_3245     FALSE 0.364 174.000 0.067 1.000   NA
 841053 841054 CPS_3246 CPS_3247     FALSE 0.133 186.000 0.000 1.000   NA
 841054 841055 CPS_3247 CPS_3248     TRUE 0.984 0.000 0.043 NA Y NA
 841055 841056 CPS_3248 CPS_3249     FALSE 0.294 302.000 0.000 NA Y NA
 841056 841057 CPS_3249 CPS_3250     TRUE 0.999 8.000 0.688 NA Y NA
 841059 841060 CPS_3252 CPS_3253     TRUE 0.973 -7.000 0.133 NA   NA
 841060 841061 CPS_3253 CPS_3254     TRUE 0.729 -40.000 0.000 NA   NA
 841061 841062 CPS_3254 CPS_3255     FALSE 0.394 52.000 0.000 NA   NA
 841062 841063 CPS_3255 CPS_3256     FALSE 0.248 84.000 0.000 NA   NA
 841063 841064 CPS_3256 CPS_3257     FALSE 0.388 53.000 0.000 NA   NA
 841064 841065 CPS_3257 CPS_3258     FALSE 0.047 402.000 0.000 1.000 N NA
 841066 841067 CPS_3259 CPS_3260     TRUE 0.888 6.000 0.000 NA N NA
 841067 841068 CPS_3260 CPS_3261     FALSE 0.044 359.000 0.000 NA   NA
 841068 841069 CPS_3261 CPS_3262     FALSE 0.147 134.000 0.000 NA   NA
 841069 841070 CPS_3262 CPS_3263     TRUE 0.458 40.000 0.000 NA   NA
 841070 841071 CPS_3263 CPS_3264     FALSE 0.294 74.000 0.000 NA   NA
 841071 841072 CPS_3264 CPS_3265     FALSE 0.306 70.000 0.000 NA   NA
 841072 841073 CPS_3265 CPS_3266     TRUE 0.437 44.000 0.000 NA   NA
 841073 841074 CPS_3266 CPS_3267     TRUE 0.838 7.000 0.000 NA   NA
 841074 841075 CPS_3267 CPS_3268     FALSE 0.325 65.000 0.000 NA   NA
 841075 841076 CPS_3268 CPS_3269   pgsA FALSE 0.099 252.000 0.000 NA   NA
 841076 841077 CPS_3269 CPS_3270 pgsA uvrC TRUE 0.740 160.000 0.227 1.000 N NA
 841077 841078 CPS_3270 CPS_3271 uvrC   TRUE 0.889 26.000 0.086 0.016 N NA
 841082 841083 CPS_3275 CPS_3276 rmf1   TRUE 0.690 246.000 0.278 NA   NA
 841083 841084 CPS_3276 CPS_3277   uup TRUE 0.468 133.000 0.094 NA   NA
 841084 841085 CPS_3277 CPS_3278 uup   TRUE 0.961 9.000 0.092 NA   NA
 841085 841086 CPS_3278 CPS_3279     TRUE 0.630 38.000 0.029 NA   NA
 841087 841088 CPS_3280 CPS_3281     FALSE 0.353 59.000 0.000 NA   NA
 841088 841089 CPS_3281 CPS_3282     FALSE 0.062 311.000 0.000 NA   NA
 841089 841090 CPS_3282 CPS_3283     FALSE 0.161 112.000 0.000 NA   NA
 841090 841091 CPS_3283 CPS_3284     FALSE 0.164 110.000 0.000 NA   NA
 841091 841092 CPS_3284 CPS_3285     FALSE 0.146 135.000 0.000 NA   NA
 841094 841095 CPS_3287 CPS_3288     FALSE 0.120 226.000 0.000 NA   NA
 841096 841097 CPS_3289 CPS_3290     FALSE 0.146 146.000 0.000 NA   NA
 841097 841098 CPS_3290 CPS_3291     TRUE 0.867 0.000 0.000 NA   NA
 841098 841099 CPS_3291 CPS_3292     FALSE 0.031 406.000 0.000 NA   NA
 841100 841101 CPS_3293 CPS_3294     FALSE 0.161 112.000 0.000 NA   NA
 841102 841103 CPS_3295 CPS_3296     FALSE 0.035 392.000 0.000 NA   NA
 841103 841104 CPS_3296 CPS_3297     FALSE 0.021 469.000 0.000 NA   NA
 841104 841105 CPS_3297 CPS_3298     TRUE 0.981 28.000 0.431 NA   NA
 841105 841106 CPS_3298 CPS_3299     FALSE 0.102 249.000 0.000 NA   NA
 841109 841110 CPS_3302 CPS_3303     FALSE 0.279 77.000 0.000 NA   NA
 841110 841111 CPS_3303 CPS_3304   baeS FALSE 0.184 102.000 0.000 NA   NA
 841111 841112 CPS_3304 CPS_3305 baeS baeR TRUE 0.994 34.000 0.591 1.000 Y NA
 841114 841115 CPS_3307 CPS_3308     TRUE 0.448 42.000 0.000 NA   NA
 841115 841116 CPS_3308 CPS_3309     FALSE 0.147 131.000 0.000 NA   NA
 841116 841117 CPS_3309 CPS_3310     TRUE 0.986 0.000 0.060 1.000 Y NA
 841117 841118 CPS_3310 CPS_3311     TRUE 0.983 9.000 0.069 1.000 Y NA
 841118 841119 CPS_3311 CPS_3312     FALSE 0.067 350.000 0.000 1.000 N NA
 841120 841121 CPS_3313 CPS_3314     TRUE 0.686 39.000 0.042 NA   NA
 841121 841122 CPS_3314 CPS_3315     TRUE 0.994 10.000 0.219 0.095 Y NA
 841122 841123 CPS_3315 CPS_3316     TRUE 0.979 159.000 0.767 NA Y NA
 841123 841124 CPS_3316 CPS_3317     FALSE 0.044 658.000 0.060 NA N NA
 841127 841128 CPS_3320 CPS_3321     FALSE 0.034 389.000 0.000 1.000   NA
 841128 841129 CPS_3321 CPS_3322     FALSE 0.148 129.000 0.000 NA   NA
 841130 841131 CPS_3323 CPS_3324     TRUE 0.696 -151.000 0.000 NA   NA
 841131 841132 CPS_3324 CPS_3325     FALSE 0.012 604.000 0.000 NA   NA
 841134 841135 CPS_3327 CPS_3328     TRUE 0.489 36.000 0.000 NA   NA
 841135 841136 CPS_3328 CPS_3329     FALSE 0.264 80.000 0.000 NA   NA
 841136 841137 CPS_3329 CPS_3330   ohr TRUE 0.752 51.000 0.086 NA   NA
 841138 841139 CPS_3331 CPS_3332     FALSE 0.010 686.000 0.000 NA   NA
 841139 841140 CPS_3332 CPS_3333     TRUE 0.709 16.000 0.000 NA   NA
 841140 841141 CPS_3333 CPS_3335     FALSE 0.012 609.000 0.000 NA   NA
 841142 841143 CPS_3334 CPS_3336     FALSE 0.008 1817.000 0.000 NA   NA
 841144 841145 CPS_3337 CPS_3338     FALSE 0.161 112.000 0.000 NA   NA
 841148 841149 CPS_3341 CPS_3342     FALSE 0.334 61.000 0.000 1.000   NA
 841149 841150 CPS_3342 CPS_3343     TRUE 0.815 10.000 0.000 1.000   NA
 841150 841151 CPS_3343 CPS_3344     FALSE 0.144 128.000 0.000 1.000   NA
 841151 841152 CPS_3344 CPS_3345     TRUE 0.422 63.000 0.000 1.000 N NA
 841152 841153 CPS_3345 CPS_3346     TRUE 0.972 0.000 0.000 0.025 Y NA
 841153 841154 CPS_3346 CPS_3347     TRUE 0.794 -52.000 0.000 1.000 N NA
 841156 841157 CPS_3349 CPS_3350     FALSE 0.405 50.000 0.000 NA   NA
 841157 841158 CPS_3350 CPS_3351     FALSE 0.286 76.000 0.000 NA   NA
 841158 841159 CPS_3351 CPS_3352     FALSE 0.060 316.000 0.000 NA   NA
 841161 841162 CPS_3354 CPS_3355   gap3 TRUE 0.975 70.000 0.689 1.000   NA
 841162 841163 CPS_3355 CPS_3356 gap3   FALSE 0.178 104.000 0.000 NA   NA
 841163 841164 CPS_3356 CPS_3357     TRUE 0.735 20.000 0.017 NA   NA
 841164 841165 CPS_3357 CPS_3358     FALSE 0.146 135.000 0.000 NA   NA
 841165 841166 CPS_3358 CPS_3359     FALSE 0.074 338.000 0.000 1.000 N NA
 841166 841167 CPS_3359 CPS_3360     TRUE 0.834 56.000 0.134 1.000 N NA
 841167 841168 CPS_3360 CPS_3361     FALSE 0.052 337.000 0.000 NA   NA
 841168 841169 CPS_3361 CPS_3362     FALSE 0.143 156.000 0.000 NA   NA
 841169 841170 CPS_3362 CPS_3363     TRUE 0.807 11.000 0.000 NA   NA
 841172 841173 CPS_3365 CPS_3366     FALSE 0.344 61.000 0.000 NA   NA
 841175 841176 CPS_3368 CPS_3369     FALSE 0.130 214.000 0.000 NA   NA
 841179 841180 CPS_3372 CPS_3373     FALSE 0.029 415.000 0.000 NA   NA
 841180 841181 CPS_3373 CPS_3374     FALSE 0.034 458.000 0.000 NA N NA
 841182 841183 CPS_3375 CPS_3376     FALSE 0.015 550.000 0.000 NA   NA
 841183 841184 CPS_3376 CPS_3377     FALSE 0.152 123.000 0.000 NA   NA
 841184 841185 CPS_3377 CPS_3378     FALSE 0.016 534.000 0.000 NA   NA
 841186 841187 CPS_3379 CPS_3380     TRUE 0.998 5.000 0.741 NA   NA
 841187 841188 CPS_3380 CPS_3381     FALSE 0.027 425.000 0.000 NA   NA
 841189 841190 CPS_3382 CPS_3383     TRUE 0.739 -31.000 0.000 NA   NA
 841193 841194 CPS_3386 CPS_3387     FALSE 0.227 90.000 0.000 NA   NA
 841194 841195 CPS_3387 CPS_3388     FALSE 0.164 110.000 0.000 NA   NA
 841196 841197 CPS_3389 CPS_3390     TRUE 0.695 17.000 0.000 NA   NA
 841197 841198 CPS_3390 CPS_3391     FALSE 0.141 135.000 0.000 1.000   NA
 841199 841200 CPS_3392 CPS_3393     FALSE 0.248 84.000 0.000 NA   NA
 841201 841202 CPS_3394 CPS_3395     FALSE 0.315 68.000 0.000 NA   NA
 841202 841203 CPS_3395 CPS_3396     FALSE 0.213 94.000 0.000 NA   NA
 841203 841204 CPS_3396 CPS_3397     TRUE 0.620 25.000 0.000 NA   NA
 841205 841206 CPS_3398 CPS_3399     FALSE 0.025 440.000 0.000 NA   NA
 841206 841207 CPS_3399 CPS_3400     FALSE 0.126 219.000 0.000 NA   NA
 841208 841209 CPS_3401 CPS_3402     FALSE 0.143 165.000 0.000 NA   NA
 841210 841211 CPS_3403 CPS_3404     FALSE 0.379 54.000 0.000 NA   NA
 841212 841213 CPS_3405 CPS_3406     TRUE 0.992 1.000 0.271 NA   NA
 841213 841214 CPS_3406 CPS_3407     TRUE 0.996 -10.000 0.542 NA   NA
 841214 841215 CPS_3407 CPS_3408   nhaP FALSE 0.012 595.000 0.000 NA   NA
 841215 841216 CPS_3408 CPS_3409 nhaP   FALSE 0.175 218.000 0.000 1.000 N NA
 841216 841217 CPS_3409 CPS_3410     FALSE 0.143 161.000 0.000 NA   NA
 841217 841218 CPS_3410 CPS_3411     FALSE 0.240 137.000 0.027 NA   NA
 841218 841219 CPS_3411 CPS_3412     TRUE 0.795 218.000 0.315 1.000 N NA
 841219 841220 CPS_3412 CPS_3413     TRUE 0.956 277.000 0.732 NA Y NA
 841220 841221 CPS_3413 CPS_3414     TRUE 0.897 344.000 0.615 NA Y NA
 841221 841222 CPS_3414 CPS_3415     TRUE 0.980 84.000 0.589 0.038 Y NA
 841222 841223 CPS_3415 CPS_3416     TRUE 0.998 -3.000 0.621 1.000 N NA
 841223 841224 CPS_3416 CPS_3417     TRUE 0.996 0.000 0.421 1.000 N NA
 841224 841225 CPS_3417 CPS_3418     FALSE 0.318 204.000 0.053 1.000   NA
 841227 841228 CPS_3420 CPS_3421     TRUE 0.429 225.000 0.000 0.052 Y NA
 841229 841230 CPS_3422 CPS_3423   mmsA3 TRUE 0.831 9.000 0.000 NA   NA
 841230 841231 CPS_3423 CPS_3424 mmsA3 mmsB FALSE 0.175 173.000 0.000 0.002 N NA
 841231 841232 CPS_3424 CPS_3425 mmsB   FALSE 0.019 580.000 0.000 1.000 N NA
 841232 841233 CPS_3425 CPS_3426     FALSE 0.145 125.000 0.000 1.000   NA
 841234 841235 CPS_3427 CPS_3428 fadD2   FALSE 0.122 269.000 0.000 1.000 N NA
 841235 841236 CPS_3428 CPS_3429     TRUE 0.862 0.000 0.000 1.000   NA
 841236 841237 CPS_3429 CPS_3430     TRUE 0.985 5.000 0.200 NA   NA
 841237 841238 CPS_3430 CPS_3431     FALSE 0.147 141.000 0.000 NA   NA
 841239 841240 CPS_3432 CPS_3433     TRUE 0.983 31.000 0.500 NA   NA
 841240 841241 CPS_3433 CPS_3434     FALSE 0.165 109.000 0.000 NA   NA
 841241 841242 CPS_3434 CPS_3435     TRUE 0.709 16.000 0.000 NA   NA
 841242 841243 CPS_3435 CPS_3436     FALSE 0.131 211.000 0.000 NA   NA
 841244 841245 CPS_3437 CPS_3438     FALSE 0.087 269.000 0.000 NA   NA
 841246 841247 CPS_3439 CPS_3440     FALSE 0.114 235.000 0.000 NA   NA
 841247 841248 CPS_3440 CPS_3441     TRUE 0.718 -64.000 0.000 NA   NA
 841249 841250 CPS_3442 CPS_3443     TRUE 0.897 3.000 0.000 1.000 N NA
 841250 841251 CPS_3443 CPS_3444     TRUE 0.610 25.000 0.000 1.000   NA
 841251 841252 CPS_3444 CPS_3445     TRUE 0.489 36.000 0.000 NA   NA
 841252 841253 CPS_3445 CPS_3446     FALSE 0.152 123.000 0.000 NA   NA
 841253 841254 CPS_3446 CPS_3447   secG FALSE 0.379 54.000 0.000 NA   NA
 841254 841255 CPS_3447 CPS_3448 secG tpiA TRUE 0.987 3.000 0.184 1.000 N NA
 841255 841256 CPS_3448 CPS_3449 tpiA glmM TRUE 0.680 197.000 0.082 1.000 Y NA
 841256 841257 CPS_3449 CPS_3450 glmM   TRUE 0.831 9.000 0.000 NA   NA
 841257 841258 CPS_3450 CPS_3451   folP TRUE 0.854 -3.000 0.000 NA   NA
 841258 841259 CPS_3451 CPS_3452 folP ftsH TRUE 0.824 156.000 0.325 1.000 N NA
 841259 841260 CPS_3452 CPS_3453 ftsH rrmJ TRUE 0.621 158.000 0.152 NA N NA
 841262 841263 CPS_3455 CPS_3456     TRUE 0.965 64.000 0.549 1.000   NA
 841263 841264 CPS_3456 CPS_3457   greA FALSE 0.168 223.000 0.000 1.000 N NA
 841264 841265 CPS_3457 CPS_3458 greA carB TRUE 0.767 122.000 0.241 1.000 N NA
 841265 841266 CPS_3458 CPS_3459 carB carA TRUE 0.988 29.000 0.345 0.000 Y NA
 841266 841267 CPS_3459 CPS_3460 carA dapB FALSE 0.402 291.000 0.034 1.000 Y NA
 841267 841268 CPS_3460 CPS_3461 dapB   FALSE 0.184 102.000 0.000 NA   NA
 841268 841269 CPS_3461 CPS_3462   fklB FALSE 0.165 109.000 0.000 NA   NA
 841269 841270 CPS_3462 CPS_3463 fklB putP FALSE 0.142 249.000 0.000 1.000 N NA
 841271 841272 CPS_3464 CPS_3465     FALSE 0.188 205.000 0.000 NA N NA
 841273 841274 CPS_3466 CPS_3467 ligA   TRUE 0.531 153.000 0.106 1.000 N NA
 841275 841276 CPS_3468 CPS_3469     FALSE 0.133 207.000 0.000 NA   NA
 841277 841278 CPS_3470 CPS_3471     FALSE 0.132 191.000 0.000 1.000   NA
 841278 841279 CPS_3471 CPS_3472     FALSE 0.156 118.000 0.000 NA   NA
 841281 841282 CPS_3474 CPS_3475     TRUE 0.521 153.000 0.014 1.000 Y NA
 841284 841285 CPS_3477 CPS_3478 lolE lolD TRUE 0.997 -7.000 0.620 0.046 N NA
 841285 841286 CPS_3478 CPS_3479 lolD lolC TRUE 0.974 13.000 0.175 0.046 N NA
 841287 841288 CPS_3480 CPS_3481     FALSE 0.279 77.000 0.000 NA   NA
 841292 841293 CPS_3485 CPS_3486     TRUE 0.933 195.000 0.683 NA   NA
 841293 841294 CPS_3486 CPS_3487     TRUE 0.996 20.000 0.761 NA   NA
 841295 841296 CPS_3488 CPS_3489 fadR   FALSE 0.013 592.000 0.000 NA   NA
 841296 841297 CPS_3489 CPS_3490     FALSE 0.013 581.000 0.000 NA   NA
 841298 841299 CPS_3491 CPS_3492     FALSE 0.143 165.000 0.000 NA   NA
 841299 841300 CPS_3492 CPS_3493     TRUE 0.739 -31.000 0.000 NA   NA
 841301 841302 CPS_3494 CPS_3495     FALSE 0.143 160.000 0.000 NA   NA
 841302 841303 CPS_3495 CPS_3496     TRUE 0.453 41.000 0.000 NA   NA
 841304 841305 CPS_3497 CPS_3498     FALSE 0.219 117.000 0.000 NA N NA
 841305 841306 CPS_3498 CPS_3499     FALSE 0.147 134.000 0.000 NA   NA
 841306 841307 CPS_3499 CPS_3500     TRUE 0.727 -49.000 0.000 NA   NA
 841307 841308 CPS_3500 CPS_3501     FALSE 0.315 68.000 0.000 NA   NA
 841308 841309 CPS_3501 CPS_3502     FALSE 0.286 76.000 0.000 NA   NA
 841309 841310 CPS_3502 CPS_3503     TRUE 0.416 48.000 0.000 NA   NA
 841311 841312 CPS_3504 CPS_3505     FALSE 0.334 61.000 0.000 1.000   NA
 841312 841313 CPS_3505 CPS_3506     TRUE 0.964 -7.000 0.000 0.076 Y NA
 841313 841314 CPS_3506 CPS_3507     FALSE 0.278 95.000 0.000 1.000 N NA
 841314 841315 CPS_3507 CPS_3508     FALSE 0.186 198.000 0.000 1.000 N NA
 841317 841318 CPS_3510 CPS_3511     FALSE 0.131 194.000 0.000 1.000   NA
 841319 841320 CPS_3512 CPS_3513 nhaD dsbB FALSE 0.200 138.000 0.000 1.000 N NA
 841321 841322 CPS_3514 CPS_3515     TRUE 0.607 26.000 0.000 NA   NA
 841322 841323 CPS_3515 CPS_3516     TRUE 0.650 62.000 0.069 NA   NA
 841323 841324 CPS_3516 CPS_3517     TRUE 0.995 0.000 0.363 NA   NA
 841324 841325 CPS_3517 CPS_3518   rnd FALSE 0.282 263.000 0.073 NA   NA
 841325 841326 CPS_3518 CPS_3519 rnd rluB TRUE 0.914 21.000 0.000 1.000 Y NA
 841326 841327 CPS_3519 CPS_3520 rluB   FALSE 0.343 375.000 0.075 NA Y NA
 841327 841328 CPS_3520 CPS_3521     TRUE 0.852 89.000 0.281 NA   NA
 841329 841330 CPS_3522 CPS_3523 trpE trpG TRUE 0.999 -7.000 0.703 0.001 Y NA
 841330 841331 CPS_3523 CPS_3524 trpG trpD TRUE 0.902 50.000 0.083 1.000 Y NA
 841331 841332 CPS_3524 CPS_3525 trpD trpC/F TRUE 0.997 2.000 0.293 1.000 Y NA
 841332 841333 CPS_3525 CPS_3526 trpC/F trpB2 TRUE 0.995 2.000 0.221 0.001 Y NA
 841333 841334 CPS_3526 CPS_3527 trpB2 trpA TRUE 1.000 0.000 0.947 0.001 Y NA
 841335 841336 CPS_3528 CPS_3529     FALSE 0.008 1864.000 0.000 NA   NA
 841336 841337 CPS_3529 CPS_3530     FALSE 0.348 169.000 0.057 NA   NA
 841341 841342 CPS_3534 CPS_3535     TRUE 0.867 0.000 0.000 NA   NA
 841343 841344 CPS_3536 CPS_3537     TRUE 0.549 92.000 0.082 NA   NA
 841344 841345 CPS_3537 CPS_3538   xni TRUE 0.984 3.000 0.178 NA   NA
 841345 841346 CPS_3538 CPS_3539 xni   TRUE 0.945 21.000 0.167 NA   NA
 841346 841347 CPS_3539 CPS_3540     FALSE 0.087 269.000 0.000 NA   NA
 841348 841349 CPS_3541 CPS_3542     TRUE 0.735 81.000 0.144 NA   NA
 841349 841350 CPS_3542 CPS_3543     TRUE 0.490 76.000 0.039 NA   NA
 841350 841351 CPS_3543 CPS_3544     TRUE 0.983 0.000 0.157 NA   NA
 841353 841354 CPS_3546 CPS_3547   kdsA FALSE 0.135 198.000 0.000 NA   NA
 841354 841355 CPS_3547 CPS_3548 kdsA   FALSE 0.218 209.000 0.029 1.000   NA
 841355 841356 CPS_3548 CPS_3549     TRUE 0.546 77.000 0.056 1.000   NA
 841356 841357 CPS_3549 CPS_3550     TRUE 0.757 95.000 0.195 NA   NA
 841357 841358 CPS_3550 CPS_3551     FALSE 0.156 409.000 0.109 NA   NA
 841358 841359 CPS_3551 CPS_3552   prfA TRUE 0.973 36.000 0.229 1.000 Y NA
 841362 841363 CPS_3555 CPS_3556   ispE TRUE 0.879 47.000 0.157 1.000 N NA
 841363 841364 CPS_3556 CPS_3557 ispE prsA FALSE 0.388 161.000 0.053 1.000 N NA
 841364 841365 CPS_3557 CPS_3558 prsA   FALSE 0.370 297.000 0.122 1.000 N NA
 841365 841366 CPS_3558 CPS_3559   pth TRUE 0.992 31.000 0.496 0.015 Y NA
 841366 841367 CPS_3559 CPS_3560 pth   TRUE 0.952 49.000 0.184 1.000 Y NA
 841367 841368 CPS_3560 CPS_3561     TRUE 0.482 37.000 0.000 NA   NA
 841368 841369 CPS_3561 CPS_3562     FALSE 0.022 464.000 0.000 NA   NA
 841369 841370 CPS_3562 CPS_3563     FALSE 0.142 176.000 0.000 NA   NA
 841370 841371 CPS_3563 CPS_3564     TRUE 0.443 43.000 0.000 NA   NA
 841371 841372 CPS_3564 CPS_3565     FALSE 0.329 64.000 0.000 NA   NA
 841372 841373 CPS_3565 CPS_3566     FALSE 0.388 53.000 0.000 NA   NA
 841373 841374 CPS_3566 CPS_3567     FALSE 0.240 86.000 0.000 NA   NA
 841375 841376 CPS_3568 CPS_3569 ubiF   FALSE 0.311 87.000 0.000 1.000 N NA
 841377 841378 CPS_3570 CPS_3571     TRUE 0.695 -169.000 0.000 NA   NA
 841378 841379 CPS_3571 CPS_3572   miaB FALSE 0.202 152.000 0.000 NA N NA
 841379 841380 CPS_3572 CPS_3573 miaB   TRUE 0.912 53.000 0.220 1.000 N NA
 841380 841381 CPS_3573 CPS_3574     TRUE 0.996 0.000 0.457 NA   NA
 841381 841382 CPS_3574 CPS_3575   corC TRUE 0.643 103.000 0.150 NA   NA
 841382 841383 CPS_3575 CPS_3576 corC cutE TRUE 0.997 -7.000 0.557 1.000 N NA
 841384 841385 CPS_3577 CPS_3578     TRUE 0.992 84.000 0.902 1.000 Y NA
 841386 841387 CPS_3579 CPS_3580   ibpA FALSE 0.301 300.000 0.000 NA Y NA
 841392 841393 CPS_3585 CPS_3586     TRUE 0.862 0.000 0.000 1.000   NA
 841395 841396 CPS_3588 CPS_3589     FALSE 0.143 163.000 0.000 NA   NA
 841396 841397 CPS_3589 CPS_3590     FALSE 0.154 121.000 0.000 NA   NA
 841398 841399 CPS_3591 CPS_3592 pcaI pcaJ TRUE 0.992 -3.000 0.143 0.000 Y NA
 841399 841400 CPS_3592 CPS_3593 pcaJ   TRUE 0.990 0.000 0.214 1.000 N NA
 841400 841401 CPS_3593 CPS_3594   pcaF TRUE 0.447 279.000 0.143 1.000 N NA
 841402 841403 CPS_3595 CPS_3596     TRUE 0.912 0.000 0.008 NA N NA
 841403 841404 CPS_3596 CPS_3597     TRUE 0.499 144.000 0.000 NA Y NA
 841404 841405 CPS_3597 CPS_3598     FALSE 0.034 398.000 0.000 NA   NA
 841405 841406 CPS_3598 CPS_3599     TRUE 0.936 161.000 0.676 NA   NA
 841411 841412 CPS_3604 CPS_3605     FALSE 0.122 223.000 0.000 NA   NA
 841412 841413 CPS_3605 CPS_3606     FALSE 0.306 70.000 0.000 NA   NA
 841414 841415 CPS_3607 CPS_3608     FALSE 0.146 138.000 0.000 NA   NA
 841415 841416 CPS_3608 CPS_3609     TRUE 0.951 -7.000 0.077 1.000   NA
 841416 841417 CPS_3609 CPS_3610     FALSE 0.152 116.000 0.000 1.000   NA
 841418 841419 CPS_3611 CPS_3612     FALSE 0.195 99.000 0.000 NA   NA
 841421 841422 CPS_3614 CPS_3615 pabB   TRUE 0.428 291.000 0.169 1.000   NA
 841422 841423 CPS_3615 CPS_3616     FALSE 0.209 95.000 0.000 NA   NA
 841423 841424 CPS_3616 CPS_3617   sdaA FALSE 0.045 357.000 0.000 NA   NA
 841425 841426 CPS_3618 CPS_3619     TRUE 0.951 -3.000 0.059 NA   NA
 841428 841429 CPS_3621 CPS_3622 thyA lgt TRUE 0.986 0.000 0.164 1.000 N NA
 841429 841430 CPS_3622 CPS_3623 lgt   FALSE 0.115 223.000 0.005 1.000   NA
 841430 841431 CPS_3623 CPS_3624   ptsP FALSE 0.235 85.000 0.000 1.000   NA
 841431 841432 CPS_3624 CPS_3625 ptsP nudH FALSE 0.256 152.000 0.019 1.000 N NA
 841434 841435 CPS_3627 CPS_3628     FALSE 0.199 148.000 0.000 1.000 N NA
 841435 841436 CPS_3628 CPS_3629     FALSE 0.147 245.000 0.000 1.000 N NA
 841436 841437 CPS_3629 CPS_3630     TRUE 0.999 9.000 0.874 0.006 Y NA
 841437 841438 CPS_3630 CPS_3631     FALSE 0.211 119.000 0.000 1.000 N NA
 841438 841439 CPS_3631 CPS_3632     FALSE 0.140 149.000 0.000 1.000   NA
 841439 841440 CPS_3632 CPS_3633     TRUE 0.910 281.000 0.790 0.043   NA
 841440 841441 CPS_3633 CPS_3634     FALSE 0.139 153.000 0.000 1.000   NA
 841441 841442 CPS_3634 CPS_3635     FALSE 0.136 197.000 0.000 NA   NA
 841444 841445 CPS_3637 CPS_3638     TRUE 0.999 11.000 0.937 NA   NA
 841445 841446 CPS_3638 CPS_3639   phoU TRUE 0.484 218.000 0.014 NA Y NA
 841446 841447 CPS_3639 CPS_3640 phoU pstB TRUE 0.977 49.000 0.330 0.092 Y NA
 841447 841448 CPS_3640 CPS_3641 pstB pstA TRUE 0.952 152.000 0.511 0.001 Y NA
 841448 841449 CPS_3641 CPS_3642 pstA pstC TRUE 0.876 186.000 0.489 0.092   NA
 841449 841450 CPS_3642 CPS_3643 pstC   FALSE 0.047 347.000 0.000 1.000   NA
 841450 841451 CPS_3643 CPS_3644     TRUE 0.900 96.000 0.212 1.000 Y NA
 841451 841452 CPS_3644 CPS_3645     TRUE 0.601 95.000 0.000 1.000 Y NA
 841452 841453 CPS_3645 CPS_3646     FALSE 0.103 248.000 0.000 NA   NA
 841454 841455 CPS_3647 CPS_3648     FALSE 0.196 155.000 0.000 1.000 N NA
 841456 841457 CPS_3649 CPS_3650 truC   TRUE 0.997 2.000 0.518 NA   NA
 841458 841459 CPS_3651 CPS_3652     TRUE 0.978 29.000 0.402 NA   NA
 841459 841460 CPS_3652 CPS_3653     TRUE 0.620 25.000 0.000 NA   NA
 841461 841462 CPS_3654 CPS_3655   cobQ FALSE 0.146 137.000 0.000 NA   NA
 841462 841463 CPS_3655 CPS_3656 cobQ   TRUE 0.851 -10.000 0.003 NA N NA
 841463 841464 CPS_3656 CPS_3657   cobP TRUE 0.956 18.000 0.155 NA N NA
 841464 841465 CPS_3657 CPS_3658 cobP cobS TRUE 0.982 -3.000 0.043 1.000 Y NA
 841465 841466 CPS_3658 CPS_3659 cobS   TRUE 0.982 -3.000 0.049 0.004 Y NA
 841468 841469 CPS_3661 CPS_3662 pilU pilT TRUE 0.985 47.000 0.436 0.012 Y NA
 841470 841471 CPS_3663 CPS_3664   proC TRUE 0.879 27.000 0.092 NA   NA
 841471 841472 CPS_3664 CPS_3665 proC   TRUE 0.812 61.000 0.152 1.000   NA
 841472 841473 CPS_3665 CPS_3666     FALSE 0.352 87.000 0.026 NA   NA
 841473 841474 CPS_3666 CPS_3667   rdgB FALSE 0.327 184.000 0.050 NA   NA
 841474 841475 CPS_3667 CPS_3668 rdgB   TRUE 0.972 18.000 0.218 1.000 N NA
 841475 841476 CPS_3668 CPS_3669     TRUE 0.895 -3.000 0.000 1.000 N NA
 841476 841477 CPS_3669 CPS_3670     FALSE 0.198 151.000 0.000 1.000 N NA
 841477 841478 CPS_3670 CPS_3671     TRUE 0.758 66.000 0.016 1.000 Y NA
 841478 841479 CPS_3671 CPS_3672     FALSE 0.299 73.000 0.000 NA   NA
 841480 841481 CPS_3673 CPS_3674     FALSE 0.227 90.000 0.000 NA   NA
 841482 841483 CPS_3675 CPS_3676 purL   FALSE 0.098 299.000 0.000 1.000 N NA
 841484 841485 CPS_3677 CPS_3678     FALSE 0.170 107.000 0.000 NA   NA
 841487 841488 CPS_3680 CPS_3681 dapA   FALSE 0.055 332.000 0.000 NA   NA
 841489 841490 CPS_3682 CPS_3683 cinA   FALSE 0.143 157.000 0.000 NA   NA
 841490 841491 CPS_3683 CPS_3684     FALSE 0.178 104.000 0.000 NA   NA
 841491 841492 CPS_3684 CPS_3685     TRUE 0.867 0.000 0.000 NA   NA
 841494 841495 CPS_3687 CPS_3688 etfB etfA TRUE 1.000 -3.000 0.875 0.017 Y NA
 841495 841496 CPS_3688 CPS_3689 etfA   FALSE 0.142 249.000 0.000 1.000 N NA
 841499 841500 CPS_3692 CPS_3693     FALSE 0.264 80.000 0.000 NA   NA
 841500 841501 CPS_3693 CPS_3694     FALSE 0.303 71.000 0.000 NA   NA
 841501 841502 CPS_3694 CPS_3695     TRUE 0.699 -76.000 0.000 1.000   NA
 841502 841503 CPS_3695 CPS_3696     TRUE 0.825 39.000 0.000 0.013 Y NA
 841503 841504 CPS_3696 CPS_3697     TRUE 0.997 -7.000 0.344 1.000 Y NA
 841505 841506 CPS_3698 CPS_3699     TRUE 0.962 101.000 0.750 NA   NA
 841506 841507 CPS_3699 CPS_3700     TRUE 0.931 31.000 0.188 NA   NA
 841507 841508 CPS_3700 CPS_3701     FALSE 0.233 88.000 0.000 NA   NA
 841509 841510 CPS_3702 CPS_3703     TRUE 0.430 45.000 0.000 NA   NA
 841513 841514 CPS_3706 CPS_3707 abG   TRUE 0.930 46.000 0.120 1.000 Y NA
 841514 841515 CPS_3707 CPS_3708     TRUE 0.715 67.000 0.000 0.005 Y NA
 841515 841516 CPS_3708 CPS_3709   galR TRUE 0.954 78.000 0.500 1.000 N NA
 841516 841517 CPS_3709 CPS_3710 galR glk5 TRUE 0.446 58.000 0.000 1.000 N NA
 841520 841521 CPS_3713 CPS_3714     TRUE 0.438 60.000 0.000 1.000 N NA
 841521 841522 CPS_3714 CPS_3715     FALSE 0.369 54.000 0.000 1.000   NA
 841522 841523 CPS_3715 CPS_3716     FALSE 0.101 225.000 0.000 0.004   NA
 841523 841524 CPS_3716 CPS_3717     TRUE 0.567 29.000 0.000 NA   NA
 841524 841525 CPS_3717 CPS_3718     FALSE 0.025 443.000 0.000 NA   NA
 841525 841526 CPS_3718 CPS_3719     TRUE 0.993 5.000 0.182 0.024 Y NA
 841526 841527 CPS_3719 CPS_3720     FALSE 0.182 208.000 0.000 1.000 N NA
 841527 841528 CPS_3720 CPS_3721     TRUE 0.963 -7.000 0.000 0.004 Y NA
 841528 841529 CPS_3721 CPS_3722     TRUE 0.686 69.000 0.091 NA   NA
 841529 841530 CPS_3722 CPS_3723   bglA TRUE 0.468 122.000 0.091 NA   NA
 841530 841531 CPS_3723 CPS_3724 bglA   FALSE 0.023 451.000 0.000 NA   NA
 841532 841533 CPS_3725 CPS_3726     TRUE 0.968 77.000 0.400 0.004 Y NA
 841533 841534 CPS_3726 CPS_3727     FALSE 0.149 243.000 0.000 1.000 N NA
 841534 841535 CPS_3727 CPS_3728     FALSE 0.221 115.000 0.000 NA N NA
 841535 841536 CPS_3728 CPS_3729     FALSE 0.156 118.000 0.000 NA   NA
 841536 841537 CPS_3729 CPS_3730     FALSE 0.113 237.000 0.000 NA   NA
 841538 841539 CPS_3731 CPS_3732     FALSE 0.143 170.000 0.000 NA   NA
 841541 841542 CPS_3734 CPS_3735     TRUE 0.747 14.000 0.000 NA   NA
 841542 841543 CPS_3735 CPS_3736     TRUE 0.822 10.000 0.000 NA   NA
 841543 841544 CPS_3736 CPS_3737     FALSE 0.148 129.000 0.000 NA   NA
 841544 841545 CPS_3737 CPS_3738     FALSE 0.015 733.000 0.000 NA N NA
 841546 841547 CPS_3739 CPS_3740 bglX   TRUE 0.992 25.000 0.400 0.001 Y NA
 841547 841548 CPS_3740 CPS_3741     FALSE 0.143 167.000 0.000 NA   NA
 841548 841549 CPS_3741 CPS_3742     TRUE 0.544 31.000 0.000 NA   NA
 841550 841551 CPS_3743 CPS_3744   dnaX TRUE 0.856 154.000 0.411 NA   NA
 841551 841552 CPS_3744 CPS_3745 dnaX apt TRUE 0.875 30.000 0.088 1.000 N NA
 841554 841555 CPS_3747 CPS_3748     FALSE 0.146 136.000 0.000 NA   NA
 841555 841556 CPS_3748 CPS_3749     TRUE 0.704 -91.000 0.000 NA   NA
 841558 841559 CPS_3751 CPS_3752     TRUE 0.997 6.000 0.625 1.000   NA
 841559 841560 CPS_3752 CPS_3753   exbD2 TRUE 0.999 4.000 0.955 0.091 N NA
 841560 841561 CPS_3753 CPS_3754 exbD2 exbB2 TRUE 0.998 13.000 0.917 0.045   NA
 841561 841562 CPS_3754 CPS_3755 exbB2   TRUE 0.999 0.000 0.821 0.014   NA
 841562 841563 CPS_3755 CPS_3756     TRUE 0.999 0.000 0.750 NA   NA
 841563 841564 CPS_3756 CPS_3757     FALSE 0.015 547.000 0.000 NA   NA
 841565 841566 CPS_3758 CPS_3759     FALSE 0.264 109.000 0.026 NA   NA
 841567 841568 CPS_3760 CPS_3761     FALSE 0.008 1216.000 0.000 NA   NA
 841568 841569 CPS_3761 CPS_3762   maiA FALSE 0.147 141.000 0.000 NA   NA
 841569 841570 CPS_3762 CPS_3763 maiA   TRUE 0.898 161.000 0.495 1.000 N NA
 841570 841571 CPS_3763 CPS_3764   tyrR FALSE 0.186 196.000 0.000 1.000 N NA
 841571 841572 CPS_3764 CPS_3765 tyrR phhB FALSE 0.224 178.000 0.012 1.000 N NA
 841572 841573 CPS_3765 CPS_3766 phhB phhA FALSE 0.400 358.000 0.203 1.000 N NA
 841573 841574 CPS_3766 CPS_3767 phhA   TRUE 0.862 2.000 0.000 NA   NA
 841574 841575 CPS_3767 CPS_3768     FALSE 0.157 117.000 0.000 NA   NA
 841575 841576 CPS_3768 CPS_3769     TRUE 0.999 -3.000 0.791 NA   NA
 841576 841577 CPS_3769 CPS_3770   pspC FALSE 0.225 445.000 0.190 NA   NA
 841577 841578 CPS_3770 CPS_3771 pspC pspB TRUE 0.999 -3.000 0.913 NA   NA
 841578 841579 CPS_3771 CPS_3772 pspB pspA1 TRUE 0.981 63.000 0.739 NA   NA
 841580 841581 CPS_3773 CPS_3774   pspF TRUE 0.581 28.000 0.000 NA   NA
 841581 841582 CPS_3774 CPS_3775 pspF sapA TRUE 0.994 -10.000 0.402 1.000 N NA
 841582 841583 CPS_3775 CPS_3776 sapA sapB TRUE 0.991 2.000 0.118 0.037 Y NA
 841583 841584 CPS_3776 CPS_3777 sapB sapC TRUE 0.864 38.000 0.118 0.037 N NA
 841584 841585 CPS_3777 CPS_3778 sapC sapD TRUE 0.925 95.000 0.272 1.000 Y NA
 841585 841586 CPS_3778 CPS_3779 sapD sapF TRUE 0.996 2.000 0.239 0.011 Y NA
 841587 841588 CPS_3780 CPS_3781 ppiD hupB3 FALSE 0.357 216.000 0.051 1.000 N NA
 841590 841591 CPS_3783 CPS_3784 lon clpX TRUE 0.788 244.000 0.201 0.074 Y NA
 841591 841592 CPS_3784 CPS_3785 clpX clpP TRUE 0.966 76.000 0.352 1.000 Y NA
 841592 841593 CPS_3785 CPS_3786 clpP tig TRUE 0.931 112.000 0.351 1.000 Y NA
 841593 841594 CPS_3786 CPS_3787 tig   FALSE 0.026 438.000 0.000 NA   NA
 841594 841595 CPS_3787 CPS_3788     FALSE 0.405 50.000 0.000 NA   NA
 841595 841596 CPS_3788 CPS_3789     TRUE 0.531 32.000 0.000 NA   NA
 841596 841597 CPS_3789 CPS_3790     TRUE 0.430 45.000 0.000 NA   NA
 841600 841601 CPS_3793 CPS_3794 ppiB lpxH TRUE 0.974 16.000 0.237 1.000   NA
 841603 841604 CPS_3796 CPS_3797     FALSE 0.128 217.000 0.000 NA   NA
 841605 841606 CPS_3798 CPS_3799 purF cvpA TRUE 0.743 171.000 0.262 1.000   NA
 841606 841607 CPS_3799 CPS_3800 cvpA dedD TRUE 0.635 91.000 0.116 NA   NA
 841607 841608 CPS_3800 CPS_3801 dedD folC TRUE 0.951 28.000 0.216 NA   NA
 841608 841609 CPS_3801 CPS_3802 folC accD TRUE 0.951 60.000 0.383 1.000 N NA
 841609 841610 CPS_3802 CPS_3803 accD truA FALSE 0.353 164.000 0.044 1.000 N NA
 841610 841611 CPS_3803 CPS_3804 truA   FALSE 0.082 358.000 0.016 NA N NA
 841611 841612 CPS_3804 CPS_3805   asd FALSE 0.055 384.000 0.006 NA N NA
 841612 841613 CPS_3805 CPS_3806 asd pdxB TRUE 0.891 59.000 0.097 0.006 Y NA
 841613 841614 CPS_3806 CPS_3807 pdxB fabB FALSE 0.411 196.000 0.069 1.000 N NA
 841615 841616 CPS_3808 CPS_3809     FALSE 0.143 160.000 0.000 NA   NA
 841617 841618 CPS_3810 CPS_3811     TRUE 0.695 200.000 0.224 NA   NA
 841618 841619 CPS_3811 CPS_3812     TRUE 0.946 -13.000 0.092 NA   NA
 841619 841620 CPS_3812 CPS_3813     FALSE 0.105 246.000 0.000 NA   NA
 841620 841621 CPS_3813 CPS_3814     TRUE 0.999 11.000 0.937 1.000 Y NA
 841621 841622 CPS_3814 CPS_3815     TRUE 1.000 -6.000 0.937 0.045 Y NA
 841622 841623 CPS_3815 CPS_3816     TRUE 1.000 0.000 0.944 1.000 Y NA
 841623 841624 CPS_3816 CPS_3817     TRUE 1.000 -3.000 0.976 0.001 Y NA
 841624 841625 CPS_3817 CPS_3818     TRUE 1.000 0.000 0.881 0.001 Y NA
 841627 841628 CPS_3820 CPS_3821 dnaJ dnaK2 TRUE 0.841 222.000 0.236 0.002 Y NA
 841628 841629 CPS_3821 CPS_3822 dnaK2   TRUE 0.453 218.000 0.000 1.000 Y NA
 841629 841630 CPS_3822 CPS_3823   grpE TRUE 0.488 169.000 0.000 1.000 Y NA
 841631 841632 CPS_3824 CPS_3825 ppnK recN TRUE 0.655 149.000 0.170 1.000 N NA
 841632 841633 CPS_3825 CPS_3826 recN   FALSE 0.359 194.000 0.049 1.000 N NA
 841634 841635 CPS_3827 CPS_3828     TRUE 0.976 3.000 0.124 NA   NA
 841636 841637 CPS_3829 CPS_3830 smpB   FALSE 0.147 139.000 0.000 NA   NA
 841638 841639 CPS_3831 CPS_3832     FALSE 0.098 254.000 0.000 NA   NA
 841639 841640 CPS_3832 CPS_3833     FALSE 0.157 117.000 0.000 NA   NA
 841643 841644 CPS_3836 CPS_3837     TRUE 0.896 97.000 0.364 1.000 N NA
 841644 841645 CPS_3837 CPS_3838     TRUE 0.999 -7.000 0.886 0.041 Y NA
 841646 841647 CPS_3839 CPS_3840     TRUE 0.737 64.000 0.000 1.000 Y NA
 841647 841648 CPS_3840 CPS_3841   gcvT2 FALSE 0.135 429.000 0.000 1.000 Y NA
 841648 841649 CPS_3841 CPS_3842 gcvT2   TRUE 0.766 61.000 0.012 1.000 Y NA
 841649 841650 CPS_3842 CPS_3843     FALSE 0.053 332.000 0.000 1.000   NA
 841651 841652 CPS_3844 CPS_3845 glyA3 gcvH2 TRUE 0.873 52.000 0.054 1.000 Y NA
 841652 841653 CPS_3845 CPS_3846 gcvH2 gcvP2 TRUE 0.965 52.000 0.249 1.000 Y NA
 841653 841654 CPS_3846 CPS_3847 gcvP2   FALSE 0.290 92.000 0.000 1.000 N NA
 841657 841658 CPS_3850 CPS_3851     FALSE 0.172 106.000 0.000 NA   NA
 841658 841659 CPS_3851 CPS_3852     TRUE 0.829 -7.000 0.000 NA   NA
 841659 841660 CPS_3852 CPS_3853     FALSE 0.068 296.000 0.000 1.000   NA
 841660 841661 CPS_3853 CPS_3854     FALSE 0.026 430.000 0.000 NA   NA
 841661 841662 CPS_3854 CPS_3855     FALSE 0.063 310.000 0.000 NA   NA
 841663 841664 CPS_3856 CPS_3857     FALSE 0.138 187.000 0.000 NA   NA
 841665 841666 CPS_3858 CPS_3859     TRUE 0.845 5.000 0.000 NA   NA
 841666 841667 CPS_3859 CPS_3860     FALSE 0.411 49.000 0.000 NA   NA
 841667 841668 CPS_3860 CPS_3861     TRUE 0.436 143.000 0.070 1.000 N NA
 841668 841669 CPS_3861 CPS_3862     TRUE 0.997 15.000 0.744 1.000 N NA
 841670 841671 CPS_3863 CPS_3864     FALSE 0.087 313.000 0.000 1.000 N NA
 841672 841673 CPS_3865 CPS_3866     FALSE 0.152 124.000 0.000 NA   NA
 841674 841675 CPS_3867 CPS_3868     TRUE 0.878 22.000 0.075 NA   NA
 841675 841676 CPS_3868 CPS_3869     FALSE 0.049 339.000 0.000 1.000   NA
 841676 841677 CPS_3869 CPS_3870     TRUE 0.941 14.000 0.000 0.003 Y NA
 841679 841680 CPS_3872 CPS_3873 tkt epd TRUE 0.904 112.000 0.285 1.000 Y NA
 841680 841681 CPS_3873 CPS_3874 epd pgk TRUE 0.837 69.000 0.070 0.004 Y NA
 841681 841682 CPS_3874 CPS_3875 pgk   TRUE 0.443 43.000 0.000 NA   NA
 841682 841683 CPS_3875 CPS_3876   fba FALSE 0.076 287.000 0.000 NA   NA
 841683 841684 CPS_3876 CPS_3877 fba   TRUE 0.454 140.000 0.074 NA N NA
 841685 841686 CPS_3878 CPS_3879     FALSE 0.139 184.000 0.000 NA   NA
 841686 841687 CPS_3879 CPS_3880     TRUE 0.661 20.000 0.000 NA   NA
 841687 841688 CPS_3880 CPS_3881     FALSE 0.142 177.000 0.000 NA   NA
 841689 841690 CPS_3882 CPS_3883     FALSE 0.137 176.000 0.000 1.000   NA
 841690 841691 CPS_3883 CPS_3884     FALSE 0.253 197.000 0.033 NA   NA
 841691 841692 CPS_3884 CPS_3885     FALSE 0.223 91.000 0.000 NA   NA
 841693 841694 CPS_3886 CPS_3887     FALSE 0.367 56.000 0.000 NA   NA
 841695 841696 CPS_3888 CPS_3889 hisL hisG FALSE 0.130 213.000 0.000 NA   NA
 841696 841697 CPS_3889 CPS_3890 hisG hisD2 TRUE 0.796 190.000 0.171 0.002 Y NA
 841697 841698 CPS_3890 CPS_3891 hisD2 hisC TRUE 0.965 57.000 0.294 0.002 Y NA
 841698 841699 CPS_3891 CPS_3892 hisC hisB TRUE 0.973 56.000 0.341 0.002 Y NA
 841699 841700 CPS_3892 CPS_3893 hisB hisH TRUE 0.986 12.000 0.128 0.002 Y NA
 841700 841701 CPS_3893 CPS_3894 hisH hisA TRUE 0.971 -3.000 0.010 0.002 Y NA
 841701 841702 CPS_3894 CPS_3895 hisA hisF TRUE 0.972 0.000 0.006 0.002 Y NA
 841702 841703 CPS_3895 CPS_3896 hisF hisI TRUE 0.998 -6.000 0.430 0.002 Y NA
 841703 841704 CPS_3896 CPS_3897 hisI   FALSE 0.149 128.000 0.000 NA   NA
 841704 841705 CPS_3897 CPS_3898     FALSE 0.146 136.000 0.000 NA   NA
 841705 841706 CPS_3898 CPS_3899     TRUE 0.641 22.000 0.000 NA   NA
 841707 841708 CPS_3900 CPS_3901   htpG FALSE 0.225 255.000 0.035 0.072 N NA
 841708 841709 CPS_3901 CPS_3902 htpG rrfI FALSE 0.009 982.000 0.000 NA   NA
 841709 841710 CPS_3902 CPS_3903 rrfI   TRUE 0.567 29.000 0.000 NA   NA
 841710 841711 CPS_3903 CPS_3904   rrlI TRUE 0.684 18.000 0.000 NA   NA
 841711 841712 CPS_3904 CPS_3905 rrlI   FALSE 0.146 138.000 0.000 NA   NA
 841712 841713 CPS_3905 CPS_3906     FALSE 0.367 56.000 0.000 NA   NA
 841713 841714 CPS_3906 CPS_3907   rrsI FALSE 0.188 101.000 0.000 NA   NA
 841714 841715 CPS_3907 CPS_3908 rrsI   FALSE 0.009 892.000 0.000 NA   NA
 841717 841718 CPS_3910 CPS_3911     TRUE 0.831 9.000 0.000 NA   NA
 841720 841721 CPS_3913 CPS_3914 clpB   TRUE 0.490 136.000 0.108 1.000   NA
 841721 841722 CPS_3914 CPS_3915   rluD TRUE 0.967 -19.000 0.168 1.000   NA
 841725 841726 CPS_3918 CPS_3919 nadE   FALSE 0.293 93.000 0.000 NA N NA
 841729 841730 CPS_3922 CPS_3923     TRUE 0.461 190.000 0.000 0.013 Y NA
 841730 841731 CPS_3923 CPS_3924     TRUE 0.525 107.000 0.000 0.013 Y NA
 841733 841734 CPS_3926 CPS_3927     TRUE 0.998 0.000 0.680 0.014 N NA
 841735 841736 CPS_3928 CPS_3929     FALSE 0.047 350.000 0.000 NA   NA
 841736 841737 CPS_3929 CPS_3930     TRUE 0.748 19.000 0.000 1.000 N NA
 841739 841740 CPS_3932 CPS_3933     TRUE 0.999 25.000 1.000 0.001 Y NA
 841740 841741 CPS_3933 CPS_3934     TRUE 0.774 148.000 0.286 NA   NA
 841743 841744 CPS_3936 CPS_3937     TRUE 0.877 -13.000 0.019 1.000 N NA
 841745 841746 CPS_3938 CPS_3939     FALSE 0.040 367.000 0.000 1.000   NA
 841746 841747 CPS_3939 CPS_3940     FALSE 0.143 171.000 0.000 NA   NA
 841748 841749 CPS_3941 CPS_3942     FALSE 0.032 405.000 0.000 NA   NA
 841749 841750 CPS_3942 CPS_3943     FALSE 0.009 797.000 0.000 NA   NA
 841753 841754 CPS_3946 CPS_3947     FALSE 0.147 131.000 0.000 NA   NA
 841754 841755 CPS_3947 CPS_3948     FALSE 0.030 412.000 0.000 NA   NA
 841757 841758 CPS_3950 CPS_3951     TRUE 0.959 77.000 0.333 0.018 Y NA
 841758 841759 CPS_3951 CPS_3952     TRUE 0.816 44.000 0.000 1.000 Y NA
 841759 841760 CPS_3952 CPS_3953   tyrA FALSE 0.102 293.000 0.000 1.000 N NA
 841760 841761 CPS_3953 CPS_3954 tyrA aroF TRUE 0.605 187.000 0.045 1.000 Y NA
 841761 841762 CPS_3954 CPS_3955 aroF acs FALSE 0.018 599.000 0.000 1.000 N NA
 841764 841765 CPS_3957 CPS_3958     TRUE 0.463 214.000 0.000 NA Y NA
 841765 841766 CPS_3958 CPS_3959     TRUE 0.968 43.000 0.400 NA N NA
 841766 841767 CPS_3959 CPS_3960   nagZ1 FALSE 0.117 277.000 0.000 1.000 N NA
 841767 841768 CPS_3960 CPS_3961 nagZ1   TRUE 0.898 192.000 0.500 1.000 N NA
 841768 841769 CPS_3961 CPS_3962     FALSE 0.132 208.000 0.000 NA   NA
 841769 841770 CPS_3962 CPS_3963     TRUE 0.531 32.000 0.000 NA   NA
 841770 841771 CPS_3963 CPS_3964   pip2 FALSE 0.142 174.000 0.000 NA   NA
 841771 841772 CPS_3964 CPS_3965 pip2   FALSE 0.240 86.000 0.000 NA   NA
 841772 841773 CPS_3965 CPS_3966     FALSE 0.135 198.000 0.000 NA   NA
 841773 841774 CPS_3966 CPS_3967     FALSE 0.124 222.000 0.000 NA   NA
 841774 841775 CPS_3967 CPS_3968     FALSE 0.058 369.000 0.000 1.000 N NA
 841775 841776 CPS_3968 CPS_3969     TRUE 0.984 50.000 0.711 1.000   NA
 841776 841777 CPS_3969 CPS_3970     FALSE 0.205 96.000 0.000 NA   NA
 841777 841778 CPS_3970 CPS_3971     FALSE 0.137 189.000 0.000 NA   NA
 841778 841779 CPS_3971 CPS_3972     TRUE 0.779 74.000 0.156 1.000   NA
 841779 841780 CPS_3972 CPS_3973   exbD3 TRUE 0.995 21.000 0.786 0.088   NA
 841780 841781 CPS_3973 CPS_3974 exbD3 exbB3 TRUE 0.905 77.000 0.333 0.044   NA
 841781 841782 CPS_3974 CPS_3975 exbB3   TRUE 0.996 4.000 0.455 0.014   NA
 841782 841783 CPS_3975 CPS_3976     TRUE 0.970 117.000 0.933 NA   NA
 841783 841784 CPS_3976 CPS_3977     FALSE 0.015 550.000 0.000 NA   NA
 841785 841786 CPS_3978 CPS_3979     FALSE 0.140 181.000 0.000 NA   NA
 841787 841788 CPS_3980 CPS_3981     TRUE 0.829 13.000 0.000 1.000 N NA
 841788 841789 CPS_3981 CPS_3982     TRUE 0.999 2.000 0.778 1.000 Y NA
 841789 841790 CPS_3982 CPS_3983     TRUE 0.607 26.000 0.000 NA   NA
 841792 841793 CPS_3985 CPS_3986     FALSE 0.248 84.000 0.000 NA   NA
 841793 841794 CPS_3986 CPS_3987     FALSE 0.118 230.000 0.000 NA   NA
 841794 841795 CPS_3987 CPS_3988     TRUE 0.434 99.000 0.057 1.000   NA
 841796 841797 CPS_3989 CPS_3990     FALSE 0.098 254.000 0.000 NA   NA
 841797 841798 CPS_3990 CPS_3991     TRUE 0.904 0.000 0.000 1.000 N NA
 841799 841800 CPS_3992 CPS_3993     FALSE 0.096 258.000 0.000 NA   NA
 841800 841801 CPS_3993 CPS_3994     TRUE 0.835 179.000 0.373 NA   NA
 841801 841802 CPS_3994 CPS_3995   amt FALSE 0.094 260.000 0.000 NA   NA
 841804 841805 CPS_3997 CPS_3998     FALSE 0.133 207.000 0.000 NA   NA
 841805 841806 CPS_3998 CPS_3999     TRUE 0.854 -3.000 0.000 NA   NA
 841806 841807 CPS_3999 CPS_4000     FALSE 0.399 51.000 0.000 NA   NA
 841808 841809 CPS_4001 CPS_4002     FALSE 0.240 86.000 0.000 NA   NA
 841811 841812 CPS_4004 CPS_4005     FALSE 0.334 82.000 0.000 1.000 N NA
 841812 841813 CPS_4005 CPS_4006     FALSE 0.020 480.000 0.000 NA   NA
 841814 841815 CPS_4007 CPS_4008     FALSE 0.248 84.000 0.000 NA   NA
 841815 841816 CPS_4008 CPS_4009     FALSE 0.411 49.000 0.000 NA   NA
 841816 841817 CPS_4009 CPS_4010   betA2 FALSE 0.211 119.000 0.000 1.000 N NA
 841817 841818 CPS_4010 CPS_4011 betA2 betB2 TRUE 0.983 51.000 0.634 1.000 N NA
 841818 841819 CPS_4011 CPS_4012 betB2 betI2 TRUE 0.994 -13.000 0.459 1.000 N NA
 841819 841820 CPS_4012 CPS_4013 betI2   FALSE 0.014 698.000 0.000 1.000 N NA
 841820 841821 CPS_4013 CPS_4014     FALSE 0.195 164.000 0.000 1.000 N NA
 841821 841822 CPS_4014 CPS_4015     TRUE 0.999 -13.000 0.776 NA Y NA
 841822 841823 CPS_4015 CPS_4016     TRUE 0.963 234.000 0.667 NA Y NA
 841823 841824 CPS_4016 CPS_4017     TRUE 0.963 120.000 0.574 0.025 Y NA
 841824 841825 CPS_4017 CPS_4018     TRUE 0.992 49.000 0.912 1.000   NA
 841825 841826 CPS_4018 CPS_4019     TRUE 0.999 4.000 0.868 1.000   NA
 841826 841827 CPS_4019 CPS_4020     FALSE 0.119 229.000 0.000 NA   NA
 841827 841828 CPS_4020 CPS_4021     FALSE 0.143 170.000 0.000 NA   NA
 841829 841830 CPS_4022 CPS_4023 fdhG2 fdhB2 TRUE 1.000 -3.000 0.870 0.003 Y NA
 841830 841831 CPS_4023 CPS_4024 fdhB2 fdhA2 TRUE 0.996 2.000 0.466 0.003   NA
 841831 841832 CPS_4024 CPS_4025 fdhA2 fdhD2 TRUE 0.770 -13.000 0.010 0.003   NA
 841832 841833 CPS_4025 CPS_4026 fdhD2   TRUE 0.539 39.000 0.021 0.003   NA
 841834 841835 CPS_4027 CPS_4028     FALSE 0.013 584.000 0.000 NA   NA
 841835 841836 CPS_4028 CPS_4029     FALSE 0.310 69.000 0.000 NA   NA
 841837 841838 CPS_4030 CPS_4031   glyA4 FALSE 0.173 220.000 0.000 1.000 N NA
 841838 841839 CPS_4031 CPS_4032 glyA4 soxB2 TRUE 0.683 78.000 0.000 1.000 Y NA
 841839 841840 CPS_4032 CPS_4033 soxB2 soxD2 TRUE 0.999 13.000 0.824 0.001 Y NA
 841840 841841 CPS_4033 CPS_4034 soxD2 soxA2 TRUE 0.999 -3.000 0.824 0.001   NA
 841841 841842 CPS_4034 CPS_4035 soxA2 soxG2 TRUE 0.998 -7.000 0.778 0.001   NA
 841842 841843 CPS_4035 CPS_4036 soxG2 purU3 TRUE 0.805 173.000 0.303 1.000 N NA
 841843 841844 CPS_4036 CPS_4037 purU3   FALSE 0.177 215.000 0.000 1.000 N NA
 841847 841848 CPS_4040 CPS_4041 pntB2   TRUE 0.857 3.000 0.000 NA   NA
 841848 841849 CPS_4041 CPS_4042     FALSE 0.135 201.000 0.000 NA   NA
 841849 841850 CPS_4042 CPS_4043   mer FALSE 0.124 270.000 0.000 NA N NA
 841850 841851 CPS_4043 CPS_4044 mer   FALSE 0.394 52.000 0.000 NA   NA
 841851 841852 CPS_4044 CPS_4045     TRUE 0.854 -3.000 0.000 NA   NA
 841852 841853 CPS_4045 CPS_4046     TRUE 0.929 -15.000 0.073 NA   NA
 841853 841854 CPS_4046 CPS_4047   cofD TRUE 0.983 1.000 0.161 NA   NA
 841854 841855 CPS_4047 CPS_4048 cofD   TRUE 0.894 12.000 0.035 NA   NA
 841855 841856 CPS_4048 CPS_4049     TRUE 0.976 12.000 0.063 0.009 Y NA
 841856 841857 CPS_4049 CPS_4050     FALSE 0.015 536.000 0.000 1.000   NA
 841859 841860 CPS_4052 CPS_4053     FALSE 0.130 199.000 0.000 1.000   NA
 841860 841861 CPS_4053 CPS_4054     FALSE 0.185 211.000 0.000 NA N NA
 841861 841862 CPS_4054 CPS_4055   dht FALSE 0.194 187.000 0.000 NA N NA
 841862 841863 CPS_4055 CPS_4056 dht   TRUE 0.797 106.000 0.124 1.000 Y NA
 841863 841864 CPS_4056 CPS_4057     FALSE 0.039 375.000 0.000 NA   NA
 841864 841865 CPS_4057 CPS_4058     FALSE 0.152 123.000 0.000 NA   NA
 841866 841867 CPS_4059 CPS_4060   mmsA4 FALSE 0.243 103.000 0.000 1.000 N NA
 841867 841868 CPS_4060 CPS_4061 mmsA4 ribA FALSE 0.113 280.000 0.000 1.000 N NA
 841869 841870 CPS_4062 CPS_4063     FALSE 0.031 410.000 0.000 NA   NA
 841871 841872 CPS_4064 CPS_4065     FALSE 0.302 72.000 0.000 NA   NA
 841873 841874 CPS_4066 CPS_4067 rplS trmD TRUE 0.993 36.000 0.567 1.000 Y NA
 841874 841875 CPS_4067 CPS_4068 trmD rimM TRUE 0.994 40.000 0.672 1.000 Y NA
 841875 841876 CPS_4068 CPS_4069 rimM rpsP TRUE 0.988 29.000 0.342 0.009 Y NA
 841881 841882 CPS_4074 CPS_4075     FALSE 0.159 115.000 0.000 NA   NA
 841882 841883 CPS_4075 CPS_4076     TRUE 0.842 114.000 0.349 1.000   NA
 841884 841885 CPS_4077 CPS_4078   gshA FALSE 0.043 1822.000 0.103 NA   NA
 841885 841886 CPS_4078 CPS_4079 gshA   TRUE 0.537 168.000 0.127 1.000   NA
 841888 841889 CPS_4081 CPS_4082   lysS FALSE 0.022 452.000 0.000 1.000   NA
 841889 841890 CPS_4082 CPS_4083 lysS prfB TRUE 0.893 80.000 0.162 0.028 Y NA
 841890 841891 CPS_4083 CPS_4084 prfB   FALSE 0.011 661.000 0.000 NA   NA
 841891 841892 CPS_4084 CPS_4085     FALSE 0.115 234.000 0.000 NA   NA
 841892 841893 CPS_4085 CPS_4086     FALSE 0.139 184.000 0.000 NA   NA
 841893 841894 CPS_4086 CPS_4087     FALSE 0.175 105.000 0.000 NA   NA
 841894 841895 CPS_4087 CPS_4088   phbC FALSE 0.187 155.000 0.016 NA   NA
 841895 841896 CPS_4088 CPS_4089 phbC   FALSE 0.037 381.000 0.000 NA   NA
 841900 841901 CPS_4093 CPS_4094   recJ TRUE 0.630 24.000 0.000 NA   NA
 841901 841902 CPS_4094 CPS_4095 recJ dsbC TRUE 0.475 131.000 0.082 1.000 N NA
 841903 841904 CPS_4096 CPS_4097   srmB FALSE 0.091 308.000 0.000 1.000 N NA
 841904 841905 CPS_4097 CPS_4098 srmB   FALSE 0.062 312.000 0.000 NA   NA
 841906 841907 CPS_4099 CPS_4100 aqpZ   FALSE 0.165 109.000 0.000 NA   NA
 841907 841908 CPS_4100 CPS_4101     TRUE 0.998 0.000 0.724 NA   NA
 841908 841909 CPS_4101 CPS_4102     FALSE 0.268 79.000 0.000 NA   NA
 841909 841910 CPS_4102 CPS_4103     FALSE 0.335 63.000 0.000 NA   NA
 841911 841912 CPS_4104 CPS_4105 tal   FALSE 0.068 295.000 0.000 1.000   NA
 841915 841916 CPS_4108 CPS_4109 pyrG   FALSE 0.118 231.000 0.000 NA   NA
 841920 841921 CPS_4113 CPS_4114     TRUE 0.800 11.000 0.000 1.000   NA
 841921 841922 CPS_4114 CPS_4115   relA FALSE 0.234 85.000 0.006 1.000   NA
 841922 841923 CPS_4115 CPS_4116 relA rumA TRUE 0.419 67.000 0.007 1.000 N NA
 841925 841926 CPS_4118 CPS_4119   pdxJ FALSE 0.133 206.000 0.000 NA   NA
 841926 841927 CPS_4119 CPS_4120 pdxJ recO TRUE 0.892 44.000 0.166 1.000 N NA
 841927 841928 CPS_4120 CPS_4121 recO era TRUE 0.938 15.000 0.109 1.000   NA
 841928 841929 CPS_4121 CPS_4122 era rnc TRUE 0.974 4.000 0.127 0.032   NA
 841929 841930 CPS_4122 CPS_4123 rnc lepB3 TRUE 0.840 39.000 0.117 1.000   NA
 841930 841931 CPS_4123 CPS_4124 lepB3 lepA TRUE 0.693 107.000 0.187 1.000   NA
 841933 841934 CPS_4126 CPS_4127 rseC rseB TRUE 0.999 -7.000 0.609 NA Y NA
 841934 841935 CPS_4127 CPS_4128 rseB rseA TRUE 0.993 73.000 0.856 NA Y NA
 841935 841936 CPS_4128 CPS_4129 rseA rpoE TRUE 0.987 47.000 0.705 NA N NA
 841939 841940 CPS_4132 CPS_4133   slyD2 FALSE 0.405 48.000 0.000 1.000   NA
 841941 841942 CPS_4134 CPS_4135 recA iciA FALSE 0.119 274.000 0.000 1.000 N NA
 841943 841944 CPS_4136 CPS_4137   mutS FALSE 0.141 134.000 0.000 1.000   NA
 841945 841946 CPS_4138 CPS_4139     FALSE 0.170 107.000 0.000 NA   NA
 841946 841947 CPS_4139 CPS_4140     FALSE 0.143 169.000 0.000 NA   NA
 841947 841948 CPS_4140 CPS_4141     FALSE 0.076 287.000 0.000 NA   NA
 841948 841949 CPS_4141 CPS_4142     FALSE 0.159 234.000 0.000 1.000 N NA
 841949 841950 CPS_4142 CPS_4143     FALSE 0.195 162.000 0.000 1.000 N NA
 841950 841951 CPS_4143 CPS_4144     FALSE 0.060 319.000 0.000 NA   NA
 841953 841954 CPS_4146 CPS_4147 trmB   TRUE 0.453 157.000 0.092 NA   NA
 841955 841956 CPS_4148 CPS_4149 mutY   TRUE 0.702 99.000 0.150 NA N NA
 841956 841957 CPS_4149 CPS_4150     FALSE 0.129 215.000 0.000 NA   NA
 841957 841958 CPS_4150 CPS_4151     FALSE 0.184 102.000 0.000 NA   NA
 841958 841959 CPS_4151 CPS_4152     FALSE 0.078 283.000 0.000 NA   NA
 841959 841960 CPS_4152 CPS_4153     FALSE 0.078 284.000 0.000 NA   NA
 841960 841961 CPS_4153 CPS_4154     TRUE 0.999 -7.000 1.000 1.000 N NA
 841961 841962 CPS_4154 CPS_4155     FALSE 0.204 127.000 0.000 1.000 N NA
 841962 841963 CPS_4155 CPS_4156     FALSE 0.303 89.000 0.000 1.000 N NA
 841963 841964 CPS_4156 CPS_4157     TRUE 0.822 10.000 0.000 NA   NA
 841964 841965 CPS_4157 CPS_4158     FALSE 0.188 101.000 0.000 NA   NA
 841965 841966 CPS_4158 CPS_4159     TRUE 0.758 -21.000 0.000 NA   NA
 841966 841967 CPS_4159 CPS_4160     FALSE 0.039 376.000 0.000 NA   NA
 841967 841968 CPS_4160 CPS_4161     FALSE 0.145 125.000 0.000 1.000   NA
 841969 841970 CPS_4162 CPS_4163     TRUE 0.729 68.000 0.111 NA   NA
 841970 841971 CPS_4163 CPS_4164     FALSE 0.196 155.000 0.000 1.000 N NA
 841971 841972 CPS_4164 CPS_4165     TRUE 0.545 103.000 0.000 0.017 Y NA
 841973 841974 CPS_4166 CPS_4167     FALSE 0.202 129.000 0.000 1.000 N NA
 841977 841978 CPS_4170 CPS_4171   parC FALSE 0.150 126.000 0.000 NA   NA
 841978 841979 CPS_4171 CPS_4172 parC   FALSE 0.026 500.000 0.000 1.000 N NA
 841979 841980 CPS_4172 CPS_4173     TRUE 0.969 -3.000 0.000 0.013 Y NA
 841980 841981 CPS_4173 CPS_4174     FALSE 0.182 208.000 0.000 1.000 N NA
 841981 841982 CPS_4174 CPS_4175     TRUE 0.994 1.000 0.333 NA   NA
 841982 841983 CPS_4175 CPS_4176   parE FALSE 0.315 68.000 0.000 NA   NA
 841983 841984 CPS_4176 CPS_4177 parE   FALSE 0.199 98.000 0.000 NA   NA
 841984 841985 CPS_4177 CPS_4178   icc FALSE 0.152 124.000 0.000 NA   NA
 841985 841986 CPS_4178 CPS_4179 icc   TRUE 0.951 63.000 0.433 NA   NA
 841986 841987 CPS_4179 CPS_4180   nudF TRUE 0.934 80.000 0.443 NA   NA
 841990 841991 CPS_4183 CPS_4184 lpxL   TRUE 0.932 177.000 0.667 NA   NA
 841993 841994 CPS_4186 CPS_4187     TRUE 0.992 32.000 0.760 NA   NA
 841994 841995 CPS_4187 CPS_4188     TRUE 0.507 34.000 0.000 NA   NA
 841995 841996 CPS_4188 CPS_4189     FALSE 0.344 61.000 0.000 NA   NA
 841996 841997 CPS_4189 CPS_4190     TRUE 0.481 170.000 0.104 NA   NA
 841997 841998 CPS_4190 CPS_4191     TRUE 0.991 52.000 0.911 NA   NA
 841998 841999 CPS_4191 CPS_4192     TRUE 0.775 136.000 0.286 NA   NA
 841999 842000 CPS_4192 CPS_4193     TRUE 0.998 13.000 0.864 NA   NA
 842000 842001 CPS_4193 CPS_4194     FALSE 0.155 119.000 0.000 NA   NA
 842002 842003 CPS_4195 CPS_4196     TRUE 0.835 6.000 0.000 1.000   NA
 842006 842007 CPS_4199 CPS_4200 gmd   TRUE 0.941 14.000 0.000 0.003 Y NA
 842007 842008 CPS_4200 CPS_4201     TRUE 0.986 -7.000 0.088 1.000 Y NA
 842008 842009 CPS_4201 CPS_4202     TRUE 0.495 134.000 0.000 1.000 Y NA
 842011 842012 CPS_4204 CPS_4205   tagD TRUE 0.531 32.000 0.000 NA   NA
 842012 842013 CPS_4205 CPS_4206 tagD   TRUE 0.973 19.000 0.115 1.000 Y NA
 842013 842014 CPS_4206 CPS_4207   leuL FALSE 0.143 168.000 0.000 NA   NA
 842014 842015 CPS_4207 CPS_4208 leuL leuA FALSE 0.143 155.000 0.000 NA   NA
 842015 842016 CPS_4208 CPS_4209 leuA leuB TRUE 0.885 74.000 0.126 0.001 Y NA
 842016 842017 CPS_4209 CPS_4210 leuB leuC TRUE 0.996 2.000 0.275 0.001 Y NA
 842017 842018 CPS_4210 CPS_4211 leuC leuD TRUE 0.985 30.000 0.309 0.000 Y NA
 842020 842021 CPS_4213 CPS_4214     TRUE 0.838 7.000 0.000 NA   NA
 842021 842022 CPS_4214 CPS_4215   cca TRUE 0.761 -19.000 0.000 NA   NA
 842022 842023 CPS_4215 CPS_4216 cca   FALSE 0.107 243.000 0.000 NA   NA
 842024 842025 CPS_4217 CPS_4218     FALSE 0.219 92.000 0.000 NA   NA
 842025 842026 CPS_4218 CPS_4219   nirTB FALSE 0.020 472.000 0.000 NA   NA
 842026 842027 CPS_4219 CPS_4220 nirTB nirS FALSE 0.297 292.000 0.000 0.008 Y NA
 842028 842029 CPS_4221 CPS_4222   nirC FALSE 0.044 352.000 0.000 1.000   NA
 842029 842030 CPS_4222 CPS_4223 nirC   TRUE 0.652 122.000 0.186 0.008   NA
 842030 842031 CPS_4223 CPS_4224     TRUE 0.990 3.000 0.256 NA   NA
 842031 842032 CPS_4224 CPS_4225     TRUE 0.996 -7.000 0.310 NA Y NA
 842032 842033 CPS_4225 CPS_4226     TRUE 0.944 90.000 0.310 NA Y NA
 842033 842034 CPS_4226 CPS_4227     TRUE 0.543 369.000 0.348 NA   NA
 842034 842035 CPS_4227 CPS_4228   cobA2 TRUE 0.703 138.000 0.217 1.000   NA
 842035 842036 CPS_4228 CPS_4229 cobA2 nirN FALSE 0.384 293.000 0.125 1.000 N NA
 842036 842037 CPS_4229 CPS_4230 nirN   FALSE 0.084 269.000 0.000 1.000   NA
 842039 842040 CPS_4232 CPS_4233     TRUE 0.466 39.000 0.000 NA   NA
 842041 842042 CPS_4234 CPS_4235     FALSE 0.143 156.000 0.000 NA   NA
 842044 842045 CPS_4237 CPS_4238     TRUE 0.850 4.000 0.000 NA   NA
 842045 842046 CPS_4238 CPS_4239     TRUE 0.865 1.000 0.000 NA   NA
 842046 842047 CPS_4239 CPS_4240     FALSE 0.189 204.000 0.000 NA N NA
 842047 842048 CPS_4240 CPS_4241   guaA FALSE 0.076 338.000 0.000 NA N NA
 842048 842049 CPS_4241 CPS_4242 guaA guaB TRUE 0.583 352.000 0.190 0.000 Y NA
 842050 842051 CPS_4243 CPS_4244   xseA TRUE 0.420 47.000 0.000 NA   NA
 842051 842052 CPS_4244 CPS_4245 xseA   FALSE 0.216 114.000 0.000 1.000 N NA
 842053 842054 CPS_4246 CPS_4247   engA FALSE 0.193 98.000 0.000 1.000   NA
 842056 842057 CPS_4249 CPS_4250     TRUE 0.967 52.000 0.492 1.000   NA
 842057 842058 CPS_4250 CPS_4251   hisS TRUE 0.967 24.000 0.259 1.000   NA
 842058 842059 CPS_4251 CPS_4252 hisS ispG TRUE 0.709 183.000 0.207 1.000 N NA
 842059 842060 CPS_4252 CPS_4253 ispG   TRUE 0.874 68.000 0.233 1.000   NA
 842060 842061 CPS_4253 CPS_4254     TRUE 0.976 -7.000 0.153 1.000   NA
 842061 842062 CPS_4254 CPS_4255     TRUE 0.582 76.000 0.067 1.000   NA
 842062 842063 CPS_4255 CPS_4256   ndk TRUE 0.450 268.000 0.156 1.000   NA
 842063 842064 CPS_4256 CPS_4257 ndk   TRUE 0.482 37.000 0.000 NA   NA
 842065 842066 CPS_4258 CPS_4259     TRUE 0.675 18.000 0.000 1.000   NA
 842066 842067 CPS_4259 CPS_4260     FALSE 0.031 467.000 0.000 1.000 N NA
 842067 842068 CPS_4260 CPS_4261     TRUE 0.898 25.000 0.000 0.017 Y NA
 842069 842070 CPS_4262 CPS_4263 sfcA   FALSE 0.089 263.000 0.000 1.000   NA
 842074 842075 CPS_4267 CPS_4268 dcp   FALSE 0.013 565.000 0.000 1.000   NA
 842075 842076 CPS_4268 CPS_4269     FALSE 0.147 134.000 0.000 NA   NA
 842077 842078 CPS_4270 CPS_4271     TRUE 0.854 -3.000 0.000 NA   NA
 842078 842079 CPS_4271 CPS_4272     TRUE 0.709 16.000 0.000 NA   NA
 842079 842080 CPS_4272 CPS_4273     FALSE 0.394 52.000 0.000 NA   NA
 842081 842082 CPS_4274 CPS_4275     TRUE 0.769 13.000 0.000 NA   NA
 842082 842083 CPS_4275 CPS_4276     TRUE 0.524 404.000 0.357 1.000 N NA
 842083 842084 CPS_4276 CPS_4277     FALSE 0.013 569.000 0.000 1.000   NA
 842084 842085 CPS_4277 CPS_4278     FALSE 0.294 74.000 0.000 NA   NA
 842085 842086 CPS_4278 CPS_4279     FALSE 0.205 96.000 0.000 NA   NA
 842086 842087 CPS_4279 CPS_4280     TRUE 0.754 -22.000 0.000 NA   NA
 842090 842091 CPS_4283 CPS_4284     FALSE 0.205 144.000 0.000 NA N NA
 842091 842092 CPS_4284 CPS_4285     FALSE 0.153 105.000 0.000 0.048   NA
 842093 842094 CPS_4286 CPS_4287     FALSE 0.349 60.000 0.000 NA   NA
 842094 842095 CPS_4287 CPS_4288   ung TRUE 0.750 -24.000 0.000 NA   NA
 842095 842096 CPS_4288 CPS_4289 ung thrC FALSE 0.197 192.000 0.008 1.000 N NA
 842096 842097 CPS_4289 CPS_4290 thrC thrB TRUE 0.943 73.000 0.233 1.000 Y NA
 842097 842098 CPS_4290 CPS_4291 thrB thrA TRUE 0.992 0.000 0.133 1.000 Y NA
 842098 842099 CPS_4291 CPS_4292 thrA   FALSE 0.298 153.000 0.043 1.000   NA
 842099 842100 CPS_4292 CPS_4293     FALSE 0.140 148.000 0.000 1.000   NA
 842100 842101 CPS_4293 CPS_4294     TRUE 0.974 0.000 0.000 NA Y NA
 842101 842102 CPS_4294 CPS_4295     TRUE 0.971 -3.000 0.000 NA Y NA
 842102 842103 CPS_4295 CPS_4296     FALSE 0.042 366.000 0.000 NA   NA
 842103 842104 CPS_4296 CPS_4297     FALSE 0.145 149.000 0.000 NA   NA
 842104 842105 CPS_4297 CPS_4298     TRUE 0.544 31.000 0.000 NA   NA
 842107 842108 CPS_4300 CPS_4301     TRUE 0.754 -22.000 0.000 NA   NA
 842108 842109 CPS_4301 CPS_4302   hrpB TRUE 0.761 86.000 0.158 1.000 N NA
 842110 842111 CPS_4303 CPS_4304     FALSE 0.082 279.000 0.000 NA   NA
 842111 842112 CPS_4304 CPS_4305   sfsA FALSE 0.286 76.000 0.000 NA   NA
 842112 842113 CPS_4305 CPS_4306 sfsA dksA TRUE 0.433 274.000 0.151 NA   NA
 842113 842114 CPS_4306 CPS_4307 dksA   TRUE 0.934 42.000 0.231 1.000 N NA
 842114 842115 CPS_4307 CPS_4308     FALSE 0.316 65.000 0.000 1.000   NA
 842115 842116 CPS_4308 CPS_4309     FALSE 0.256 82.000 0.000 NA   NA
 842116 842117 CPS_4309 CPS_4310   pcnB FALSE 0.136 197.000 0.000 NA   NA
 842117 842118 CPS_4310 CPS_4311 pcnB folK2 TRUE 0.987 11.000 0.234 1.000 N NA
 842118 842119 CPS_4311 CPS_4312 folK2 panB TRUE 0.855 83.000 0.117 1.000 Y NA
 842119 842120 CPS_4312 CPS_4313 panB panC TRUE 0.936 111.000 0.395 0.000 Y NA
 842120 842121 CPS_4313 CPS_4314 panC   FALSE 0.226 88.000 0.000 1.000   NA
 842122 842123 CPS_4315 CPS_4316     FALSE 0.145 150.000 0.000 NA   NA
 842125 842126 CPS_4318 CPS_4319 uraA upp TRUE 0.900 57.000 0.101 1.000 Y NA
 842126 842127 CPS_4319 CPS_4320 upp   FALSE 0.189 186.000 0.000 1.000 N NA
 842127 842128 CPS_4320 CPS_4321     TRUE 0.823 -7.000 0.000 1.000   NA
 842128 842129 CPS_4321 CPS_4322     FALSE 0.052 333.000 0.000 1.000   NA
 842131 842132 CPS_4324 CPS_4325     TRUE 0.993 -10.000 0.385 0.044 N NA
 842132 842133 CPS_4325 CPS_4326     TRUE 0.985 -10.000 0.229 0.043 N NA
 842133 842134 CPS_4326 CPS_4327     TRUE 0.600 83.000 0.086 1.000   NA
 842134 842135 CPS_4327 CPS_4328     FALSE 0.060 311.000 0.000 1.000   NA
 842135 842136 CPS_4328 CPS_4329     TRUE 0.867 0.000 0.000 NA   NA
 842136 842137 CPS_4329 CPS_4330     TRUE 0.692 -435.000 0.000 NA   NA
 842139 842140 CPS_4332 CPS_4333     FALSE 0.142 178.000 0.000 NA   NA
 842140 842141 CPS_4333 CPS_4334   rpoD FALSE 0.159 109.000 0.000 1.000   NA
 842141 842142 CPS_4334 CPS_4335 rpoD dnaG TRUE 0.780 218.000 0.299 1.000 N NA
 842142 842143 CPS_4335 CPS_4336 dnaG   TRUE 0.542 189.000 0.137 1.000   NA
 842143 842144 CPS_4336 CPS_4337   rpsU TRUE 0.858 52.000 0.173 0.014   NA
 842147 842148 CPS_4340 CPS_4341 folB folK3 TRUE 0.999 0.000 0.500 1.000 Y NA
 842148 842149 CPS_4341 CPS_4342 folK3   TRUE 0.806 62.000 0.125 1.000 N NA
 842149 842150 CPS_4342 CPS_4343     FALSE 0.273 96.000 0.000 1.000 N NA
 842152 842153 CPS_4345 CPS_4346   degP FALSE 0.293 128.000 0.038 NA   NA
 842153 842154 CPS_4346 CPS_4347 degP degS TRUE 0.655 138.000 0.068 0.002 Y NA
 842155 842156 CPS_4348 CPS_4349 dsbA   FALSE 0.248 84.000 0.000 NA   NA
 842156 842157 CPS_4349 CPS_4350     TRUE 0.978 0.000 0.125 NA   NA
 842159 842160 CPS_4352 CPS_4353     TRUE 0.717 90.000 0.133 1.000 N NA
 842161 842162 CPS_4354 CPS_4355     FALSE 0.145 151.000 0.000 NA   NA
 842162 842163 CPS_4355 CPS_4356     FALSE 0.145 149.000 0.000 NA   NA
 842163 842164 CPS_4356 CPS_4357   purU4 FALSE 0.148 129.000 0.000 NA   NA
 842164 842165 CPS_4357 CPS_4358 purU4   FALSE 0.189 186.000 0.000 1.000 N NA
 842165 842166 CPS_4358 CPS_4359     FALSE 0.049 397.000 0.000 1.000 N NA
 842166 842167 CPS_4359 CPS_4360     TRUE 0.507 34.000 0.000 NA   NA
 842168 842169 CPS_4361 CPS_4362 dnaB   FALSE 0.249 169.000 0.030 NA   NA
 842169 842170 CPS_4362 CPS_4363     TRUE 0.617 87.000 0.095 NA   NA
 842170 842171 CPS_4363 CPS_4364     TRUE 0.898 20.000 0.087 1.000   NA
 842171 842172 CPS_4364 CPS_4365   rpmE FALSE 0.127 264.000 0.000 1.000 N NA
 842173 842174 CPS_4366 CPS_4367 priA   FALSE 0.318 86.000 0.018 NA   NA
 842176 842177 CPS_4369 CPS_4370 hslV hslU TRUE 0.991 76.000 0.752 1.000 Y NA
 842177 842178 CPS_4370 CPS_4371 hslU   FALSE 0.385 162.000 0.070 NA   NA
 842179 842180 CPS_4372 CPS_4373     FALSE 0.235 339.000 0.000 1.000 Y NA
 842182 842183 CPS_4375 CPS_4376     FALSE 0.192 100.000 0.000 NA   NA
 842183 842184 CPS_4376 CPS_4377     TRUE 0.867 0.000 0.000 NA   NA
 842184 842185 CPS_4377 CPS_4378     FALSE 0.018 504.000 0.000 NA   NA
 842185 842186 CPS_4378 CPS_4379   orn FALSE 0.252 83.000 0.000 NA   NA
 842187 842188 CPS_4380 CPS_4381 rsgA psd TRUE 0.955 11.000 0.095 1.000   NA
 842188 842189 CPS_4381 CPS_4382 psd   FALSE 0.199 147.000 0.000 1.000 N NA
 842189 842190 CPS_4382 CPS_4383     TRUE 0.985 19.000 0.200 1.000 Y NA
 842190 842191 CPS_4383 CPS_4384   pldB FALSE 0.269 97.000 0.000 1.000 N NA
 842194 842195 CPS_4387 CPS_4388 gpsA secB TRUE 0.912 49.000 0.206 1.000 N NA
 842195 842196 CPS_4388 CPS_4389 secB   TRUE 0.559 39.000 0.000 1.000 N NA
 842196 842197 CPS_4389 CPS_4390     TRUE 0.465 56.000 0.000 NA N NA
 842198 842199 CPS_4391 CPS_4392 gpmA   TRUE 0.827 73.000 0.170 1.000 N NA
 842199 842200 CPS_4392 CPS_4393     TRUE 0.457 120.000 0.088 1.000   NA
 842202 842203 CPS_4395 CPS_4396     FALSE 0.223 89.000 0.000 1.000   NA
 842203 842204 CPS_4396 CPS_4397     TRUE 0.488 35.000 0.000 1.000   NA
 842205 842206 CPS_4398 CPS_4399     FALSE 0.157 117.000 0.000 NA   NA
 842206 842207 CPS_4399 CPS_4400     FALSE 0.294 74.000 0.000 NA   NA
 842208 842209 CPS_4401 CPS_4402     FALSE 0.161 112.000 0.000 NA   NA
 842212 842213 CPS_4405 CPS_4406     FALSE 0.209 95.000 0.000 NA   NA
 842213 842214 CPS_4406 CPS_4407     FALSE 0.050 341.000 0.000 NA   NA
 842214 842215 CPS_4407 CPS_4408     FALSE 0.297 92.000 0.000 NA N NA
 842217 842218 CPS_4410 CPS_4411 putA   FALSE 0.145 246.000 0.000 1.000 N NA
 842218 842219 CPS_4411 CPS_4412     FALSE 0.135 198.000 0.000 NA   NA
 842219 842220 CPS_4412 CPS_4413     FALSE 0.145 151.000 0.000 NA   NA
 842220 842221 CPS_4413 CPS_4414     TRUE 0.641 22.000 0.000 NA   NA
 842222 842223 CPS_4415 CPS_4416     FALSE 0.209 121.000 0.000 1.000 N NA
 842223 842224 CPS_4416 CPS_4417     TRUE 0.998 -3.000 0.667 1.000   NA
 842224 842225 CPS_4417 CPS_4418     TRUE 0.927 200.000 0.667 1.000   NA
 842225 842226 CPS_4418 CPS_4419     TRUE 0.998 29.000 1.000 0.069 Y NA
 842226 842227 CPS_4419 CPS_4420     FALSE 0.172 206.000 0.000 0.085 N NA
 842227 842228 CPS_4420 CPS_4421     TRUE 0.831 85.000 0.235 1.000   NA
 842228 842229 CPS_4421 CPS_4422     TRUE 0.980 0.000 0.135 NA   NA
 842230 842231 CPS_4423 CPS_4424     TRUE 0.978 9.000 0.167 NA   NA
 842231 842232 CPS_4424 CPS_4425     FALSE 0.227 90.000 0.000 NA   NA
 842232 842233 CPS_4425 CPS_4426     FALSE 0.159 114.000 0.000 NA   NA
 842235 842236 CPS_4428 CPS_4429     FALSE 0.130 214.000 0.000 NA   NA
 842239 842240 CPS_4432 CPS_4433     TRUE 0.972 -13.000 0.172 NA   NA
 842240 842241 CPS_4433 CPS_4434   gmhA TRUE 0.888 54.000 0.187 1.000 N NA
 842241 842242 CPS_4434 CPS_4435 gmhA   TRUE 0.998 1.000 0.613 NA   NA
 842243 842244 CPS_4436 CPS_4437 sspB sspA TRUE 0.999 0.000 0.831 NA   NA
 842244 842245 CPS_4437 CPS_4438 sspA petC TRUE 0.906 93.000 0.370 NA N NA
 842245 842246 CPS_4438 CPS_4439 petC petB TRUE 0.999 0.000 0.630 0.001 Y NA
 842246 842247 CPS_4439 CPS_4440 petB petA TRUE 0.995 6.000 0.233 0.001 Y NA
 842247 842248 CPS_4440 CPS_4441 petA   FALSE 0.405 50.000 0.000 NA   NA
 842248 842249 CPS_4441 CPS_4442   rpsI FALSE 0.063 310.000 0.000 NA   NA
 842249 842250 CPS_4442 CPS_4443 rpsI rplM TRUE 0.999 4.000 0.601 0.009 Y NA
 842251 842252 CPS_4444 CPS_4445     FALSE 0.339 62.000 0.000 NA   NA
 842254 842255 CPS_4447 CPS_4448 pilB pilC TRUE 0.927 119.000 0.362 0.013 Y NA
 842255 842256 CPS_4448 CPS_4449 pilC pilD TRUE 0.952 108.000 0.454 1.000 Y NA
 842256 842257 CPS_4449 CPS_4450 pilD coaE FALSE 0.331 318.000 0.122 1.000 N NA
 842257 842258 CPS_4450 CPS_4451 coaE   TRUE 0.753 61.000 0.110 NA   NA
 842258 842259 CPS_4451 CPS_4452     TRUE 0.852 109.000 0.356 NA   NA
 842260 842261 CPS_4453 CPS_4454 mutT secA FALSE 0.381 335.000 0.168 1.000 N NA
 842261 842262 CPS_4454 CPS_4455 secA   TRUE 0.623 91.000 0.111 1.000   NA
 842268 842269 CPS_4461 CPS_4462 ftsA ftsQ TRUE 0.985 22.000 0.389 NA N NA
 842269 842270 CPS_4462 CPS_4463 ftsQ   TRUE 0.997 10.000 0.372 NA Y NA
 842270 842271 CPS_4463 CPS_4464   murC TRUE 0.993 0.000 0.153 0.003 Y NA
 842271 842272 CPS_4464 CPS_4465 murC murG TRUE 0.997 -3.000 0.283 1.000 Y NA
 842272 842273 CPS_4465 CPS_4466 murG ftsW TRUE 0.998 0.000 0.647 1.000 N NA
 842273 842274 CPS_4466 CPS_4467 ftsW murD TRUE 0.990 -9.000 0.297 0.002 N NA
 842274 842275 CPS_4467 CPS_4468 murD mraY TRUE 0.991 53.000 0.647 0.003 Y NA
 842275 842276 CPS_4468 CPS_4469 mraY murF TRUE 0.997 0.000 0.309 0.003 Y NA
 842276 842277 CPS_4469 CPS_4470 murF murE TRUE 0.999 -3.000 0.569 0.001 Y NA
 842277 842278 CPS_4470 CPS_4471 murE ftsI TRUE 0.985 -7.000 0.083 1.000 Y NA
 842278 842279 CPS_4471 CPS_4472 ftsI ftsL TRUE 0.662 139.000 0.173 1.000 N NA
 842279 842280 CPS_4472 CPS_4473 ftsL mraW TRUE 0.990 3.000 0.227 1.000 N NA
 842280 842281 CPS_4473 CPS_4474 mraW mraZ TRUE 0.976 60.000 0.635 NA   NA
 842284 842285 CPS_4477 CPS_4478     FALSE 0.157 117.000 0.000 NA   NA
 842286 842287 CPS_4479 CPS_4480     FALSE 0.130 213.000 0.000 NA   NA
 842287 842288 CPS_4480 CPS_4481     TRUE 0.835 8.000 0.000 NA   NA
 842290 842291 CPS_4483 CPS_4484     TRUE 0.999 3.000 1.000 0.085 N NA
 842291 842292 CPS_4484 CPS_4485     FALSE 0.294 74.000 0.000 NA   NA
 842292 842293 CPS_4485 CPS_4486     FALSE 0.143 168.000 0.000 NA   NA
 842295 842296 CPS_4488 CPS_4489     FALSE 0.077 285.000 0.000 NA   NA
 842298 842299 CPS_4491 CPS_4492     TRUE 0.955 14.000 0.133 1.000   NA
 842299 842300 CPS_4492 CPS_4493     TRUE 0.512 182.000 0.014 1.000 Y NA
 842301 842302 CPS_4494 CPS_4495 rsmC   FALSE 0.212 134.000 0.008 1.000 N NA
 842302 842303 CPS_4495 CPS_4496   arcA TRUE 0.601 137.000 0.037 1.000 Y NA
 842307 842308 CPS_4500 CPS_4501   gltB TRUE 0.822 10.000 0.000 NA   NA
 842308 842309 CPS_4501 CPS_4502 gltB gltD TRUE 0.905 26.000 0.016 0.001 Y NA
 842310 842311 CPS_4503 CPS_4504     FALSE 0.030 411.000 0.000 NA   NA
 842311 842312 CPS_4504 CPS_4505   folA FALSE 0.009 831.000 0.000 NA   NA
 842312 842313 CPS_4505 CPS_4506 folA   FALSE 0.247 102.000 0.000 1.000 N NA
 842313 842314 CPS_4506 CPS_4507     TRUE 0.790 12.000 0.000 NA   NA
 842314 842315 CPS_4507 CPS_4508     FALSE 0.052 338.000 0.000 NA   NA
 842315 842316 CPS_4508 CPS_4509     FALSE 0.134 205.000 0.000 NA   NA
 842316 842317 CPS_4509 CPS_4510     FALSE 0.076 282.000 0.000 1.000   NA
 842317 842318 CPS_4510 CPS_4511   rpmA TRUE 0.814 153.000 0.335 1.000   NA
 842318 842319 CPS_4511 CPS_4512 rpmA rplU TRUE 0.998 16.000 0.667 0.009 Y NA
 842326 842327 CPS_4519 CPS_4520 hepA rluA TRUE 0.609 82.000 0.070 1.000 N NA
 842327 842328 CPS_4520 CPS_4521 rluA   TRUE 0.813 64.000 0.160 NA   NA
 842330 842331 CPS_4523 CPS_4524 imp surA TRUE 0.903 44.000 0.182 1.000 N NA
 842331 842332 CPS_4524 CPS_4525 surA pdxA TRUE 0.998 0.000 0.561 1.000 N NA
 842332 842333 CPS_4525 CPS_4526 pdxA ksgA TRUE 0.966 19.000 0.197 1.000 N NA
 842333 842334 CPS_4526 CPS_4527 ksgA   FALSE 0.092 327.000 0.025 1.000   NA
 842334 842335 CPS_4527 CPS_4528     FALSE 0.335 144.000 0.050 1.000   NA
 842335 842336 CPS_4528 CPS_4529     FALSE 0.036 442.000 0.000 1.000 N NA
 842337 842338 CPS_4530 CPS_4531 murA   TRUE 0.787 119.000 0.258 NA N NA
 842338 842339 CPS_4531 CPS_4532     TRUE 0.978 33.000 0.453 NA   NA
 842339 842340 CPS_4532 CPS_4533     TRUE 0.992 4.000 0.308 NA   NA
 842340 842341 CPS_4533 CPS_4534     TRUE 0.984 5.000 0.188 NA   NA
 842341 842342 CPS_4534 CPS_4535     TRUE 0.948 88.000 0.562 NA   NA
 842342 842343 CPS_4535 CPS_4536     TRUE 0.995 27.000 0.530 NA Y NA
 842344 842345 CPS_4537 CPS_4538     TRUE 0.963 26.000 0.226 1.000 N NA
 842345 842346 CPS_4538 CPS_4539     TRUE 0.998 0.000 0.598 1.000   NA
 842346 842347 CPS_4539 CPS_4540     TRUE 0.998 -3.000 0.617 NA   NA
 842347 842348 CPS_4540 CPS_4541     TRUE 0.994 -10.000 0.459 NA   NA
 842348 842349 CPS_4541 CPS_4542     TRUE 0.997 5.000 0.543 NA   NA
 842349 842350 CPS_4542 CPS_4543   rpoN TRUE 0.642 108.000 0.163 1.000   NA
 842350 842351 CPS_4543 CPS_4544 rpoN yfiA3 TRUE 0.996 27.000 0.820 NA N NA
 842351 842352 CPS_4544 CPS_4545 yfiA3 ptsN TRUE 0.958 109.000 0.728 NA N NA
 842352 842353 CPS_4545 CPS_4546 ptsN   TRUE 0.446 301.000 0.186 NA   NA
 842353 842354 CPS_4546 CPS_4547   ptsO TRUE 0.963 16.000 0.182 NA   NA
 842354 842355 CPS_4547 CPS_4548 ptsO   FALSE 0.147 132.000 0.000 NA   NA
 842355 842356 CPS_4548 CPS_4549   mgtE FALSE 0.135 201.000 0.000 NA   NA
 842356 842357 CPS_4549 CPS_4550 mgtE   TRUE 0.747 14.000 0.000 NA   NA
 842360 842361 CPS_4553 CPS_4554 tldD   TRUE 0.920 51.000 0.259 NA   NA
 842361 842362 CPS_4554 CPS_4555     TRUE 0.993 -7.000 0.358 NA   NA
 842362 842363 CPS_4555 CPS_4556   cafA TRUE 0.469 371.000 0.296 NA   NA
 842363 842364 CPS_4556 CPS_4557 cafA maf2 TRUE 0.969 45.000 0.417 NA N NA
 842364 842365 CPS_4557 CPS_4558 maf2 mreD TRUE 0.929 39.000 0.206 NA N NA
 842365 842366 CPS_4558 CPS_4559 mreD mreC TRUE 0.999 0.000 0.550 0.001 Y NA
 842366 842367 CPS_4559 CPS_4560 mreC   TRUE 0.841 6.000 0.000 NA   NA
 842367 842368 CPS_4560 CPS_4561   mreB FALSE 0.159 114.000 0.000 NA   NA
 842368 842369 CPS_4561 CPS_4562 mreB   FALSE 0.064 308.000 0.000 NA   NA
 842369 842370 CPS_4562 CPS_4563     FALSE 0.138 186.000 0.000 NA   NA
 842372 842373 CPS_4565 CPS_4566     FALSE 0.147 143.000 0.000 NA   NA
 842373 842374 CPS_4566 CPS_4567   mshD TRUE 0.999 0.000 0.871 NA   NA
 842374 842375 CPS_4567 CPS_4568 mshD   TRUE 0.994 -10.000 0.433 NA   NA
 842375 842376 CPS_4568 CPS_4569   mshA FALSE 0.329 64.000 0.000 NA   NA
 842376 842377 CPS_4569 CPS_4570 mshA mshB TRUE 0.674 100.000 0.158 NA   NA
 842377 842378 CPS_4570 CPS_4571 mshB   FALSE 0.117 232.000 0.000 NA   NA
 842378 842379 CPS_4571 CPS_4572   mshG TRUE 0.869 12.000 0.026 NA   NA
 842379 842380 CPS_4572 CPS_4573 mshG mshE TRUE 0.993 54.000 0.740 1.000 Y NA
 842380 842381 CPS_4573 CPS_4574 mshE   TRUE 0.992 9.000 0.328 1.000   NA
 842381 842382 CPS_4574 CPS_4575   mshM TRUE 0.994 -3.000 0.338 1.000   NA
 842382 842383 CPS_4575 CPS_4576 mshM mshL TRUE 0.995 55.000 0.846 1.000 Y NA
 842383 842384 CPS_4576 CPS_4577 mshL   TRUE 0.951 0.000 0.051 NA   NA
 842384 842385 CPS_4577 CPS_4578     TRUE 0.933 -7.000 0.049 NA   NA
 842385 842386 CPS_4578 CPS_4579     TRUE 0.867 0.000 0.000 NA   NA
 842388 842389 CPS_4581 CPS_4582 gspN gspM TRUE 0.976 61.000 0.649 1.000   NA
 842389 842390 CPS_4582 CPS_4583 gspM gspL TRUE 1.000 0.000 0.811 1.000 Y NA
 842390 842391 CPS_4583 CPS_4584 gspL gspK TRUE 0.999 0.000 0.537 0.043 Y NA
 842391 842392 CPS_4584 CPS_4585 gspK gspJ TRUE 0.998 4.000 0.461 1.000 Y NA
 842392 842393 CPS_4585 CPS_4586 gspJ gspI TRUE 0.997 0.000 0.569 0.003   NA
 842393 842394 CPS_4586 CPS_4587 gspI gspH TRUE 0.996 -10.000 0.605 0.003   NA
 842394 842395 CPS_4587 CPS_4588 gspH gspG TRUE 0.936 131.000 0.425 0.003 Y NA
 842395 842396 CPS_4588 CPS_4589 gspG gspF TRUE 0.988 59.000 0.599 0.003 Y NA
 842396 842397 CPS_4589 CPS_4590 gspF gspE TRUE 0.990 59.000 0.653 0.003 Y NA
 842397 842398 CPS_4590 CPS_4591 gspE gspD TRUE 0.999 0.000 0.776 0.003 Y NA
 842398 842399 CPS_4591 CPS_4592 gspD gspC TRUE 0.965 111.000 0.575 0.003 Y NA
 842400 842401 CPS_4593 CPS_4594 hslR hslO TRUE 0.979 6.000 0.140 1.000 N NA
 842401 842402 CPS_4594 CPS_4595 hslO pckA FALSE 0.165 335.000 0.048 1.000 N NA
 842403 842404 CPS_4596 CPS_4597 envZ ompR TRUE 0.995 28.000 0.584 1.000 Y NA
 842404 842405 CPS_4597 CPS_4598 ompR   FALSE 0.145 149.000 0.000 NA   NA
 842407 842408 CPS_4600 CPS_4601     TRUE 0.914 104.000 0.500 NA   NA
 842408 842409 CPS_4601 CPS_4602     TRUE 0.897 91.000 0.381 0.084   NA
 842409 842410 CPS_4602 CPS_4603     FALSE 0.093 244.000 0.000 0.084   NA
 842411 842412 CPS_4604 CPS_4605     FALSE 0.315 68.000 0.000 NA   NA
 842412 842413 CPS_4605 CPS_4606     TRUE 0.867 0.000 0.000 NA   NA
 842413 842414 CPS_4606 CPS_4607     FALSE 0.344 61.000 0.000 NA   NA
 842414 842415 CPS_4607 CPS_4608     FALSE 0.379 54.000 0.000 NA   NA
 842416 842417 CPS_4609 CPS_4610 nagZ2 elbB FALSE 0.249 103.000 0.000 NA N NA
 842417 842418 CPS_4610 CPS_4611 elbB   TRUE 0.736 21.000 0.000 NA N NA
 842418 842419 CPS_4611 CPS_4612     TRUE 0.895 -3.000 0.000 1.000 N NA
 842420 842421 CPS_4613 CPS_4614   fbp FALSE 0.143 129.000 0.000 1.000   NA
 842422 842423 CPS_4615 CPS_4616     TRUE 0.416 48.000 0.000 NA   NA
 842423 842424 CPS_4616 CPS_4617   rnr TRUE 0.868 46.000 0.147 0.012 N NA
 842424 842425 CPS_4617 CPS_4618 rnr motX FALSE 0.355 78.000 0.019 1.000   NA
 842427 842428 CPS_4620 CPS_4621     TRUE 0.992 9.000 0.300 NA N NA
 842428 842429 CPS_4621 CPS_4622     FALSE 0.079 331.000 0.017 NA   NA
 842429 842430 CPS_4622 CPS_4623     FALSE 0.140 180.000 0.005 NA   NA
 842431 842432 CPS_4624 CPS_4625     TRUE 0.967 0.000 0.085 NA   NA
 842432 842433 CPS_4625 CPS_4626     TRUE 0.466 39.000 0.000 NA   NA
 842433 842434 CPS_4626 CPS_4627     FALSE 0.149 128.000 0.000 NA   NA
 842434 842435 CPS_4627 CPS_4628   pyrB FALSE 0.117 277.000 0.000 1.000 N NA
 842435 842436 CPS_4628 CPS_4629 pyrB hemL TRUE 0.622 43.000 0.021 1.000 N NA
 842437 842438 CPS_4630 CPS_4631     FALSE 0.299 73.000 0.000 NA   NA
 842438 842439 CPS_4631 CPS_4632   moeA FALSE 0.172 106.000 0.000 NA   NA
 842440 842441 CPS_4633 CPS_4634 moaA   TRUE 0.973 3.000 0.009 NA Y NA
 842441 842442 CPS_4634 CPS_4635   moaB TRUE 0.688 108.000 0.056 NA Y NA
 842442 842443 CPS_4635 CPS_4636 moaB moaC TRUE 0.990 0.000 0.109 0.001 Y NA
 842443 842444 CPS_4636 CPS_4637 moaC moaD TRUE 0.984 16.000 0.175 0.001 Y NA
 842444 842445 CPS_4637 CPS_4638 moaD moaE TRUE 0.998 4.000 0.501 0.001 Y NA
 842445 842446 CPS_4638 CPS_4639 moaE modA TRUE 0.702 35.000 0.026 1.000 N NA
 842446 842447 CPS_4639 CPS_4640 modA modB TRUE 0.999 -3.000 0.660 0.001 Y NA
 842447 842448 CPS_4640 CPS_4641 modB modC TRUE 0.997 0.000 0.308 0.001 Y NA
 842448 842449 CPS_4641 CPS_4642 modC thiF TRUE 0.656 29.000 0.000 1.000 N NA
 842451 842452 CPS_4644 CPS_4645 ptrB2   TRUE 0.488 166.000 0.000 1.000 Y NA
 842452 842453 CPS_4645 CPS_4646     FALSE 0.185 142.000 0.000 0.034 N NA
 842453 842454 CPS_4646 CPS_4647     TRUE 0.917 51.000 0.114 0.084 Y NA
 842454 842455 CPS_4647 CPS_4648     TRUE 0.999 0.000 0.909 NA N NA
 842455 842456 CPS_4648 CPS_4649     FALSE 0.113 236.000 0.000 NA   NA
 842456 842457 CPS_4649 CPS_4650     TRUE 0.416 48.000 0.000 NA   NA
 842457 842458 CPS_4650 CPS_4651     FALSE 0.049 344.000 0.000 NA   NA
 842458 842459 CPS_4651 CPS_4652     FALSE 0.017 520.000 0.000 NA   NA
 842459 842460 CPS_4652 CPS_4653     FALSE 0.099 252.000 0.000 NA   NA
 842462 842463 CPS_4655 CPS_4656     FALSE 0.230 89.000 0.000 NA   NA
 842463 842464 CPS_4656 CPS_4657     FALSE 0.010 755.000 0.000 NA   NA
 842467 842468 CPS_4660 CPS_4661     TRUE 0.972 16.000 0.222 NA   NA
 842470 842471 CPS_4663 CPS_4664   gabT FALSE 0.314 81.000 0.000 0.011 N NA
 842471 842472 CPS_4664 CPS_4665 gabT gabD2 FALSE 0.266 98.000 0.000 1.000 N NA
 842474 842475 CPS_4667 CPS_4668 gcdH   TRUE 0.659 61.000 0.050 1.000 N NA
 842478 842479 CPS_4671 CPS_4672 potF2 potG TRUE 0.906 105.000 0.267 1.000 Y NA
 842479 842480 CPS_4672 CPS_4673 potG potH TRUE 0.999 -3.000 0.833 1.000 Y NA
 842480 842481 CPS_4673 CPS_4674 potH potL TRUE 1.000 0.000 0.833 0.034 Y NA
 842481 842482 CPS_4674 CPS_4675 potL   FALSE 0.336 78.000 0.000 0.084 N NA
 842483 842484 CPS_4676 CPS_4677     TRUE 0.833 39.000 0.000 1.000 Y NA
 842485 842486 CPS_4678 CPS_4679     FALSE 0.265 78.000 0.000 1.000   NA
 842486 842487 CPS_4679 CPS_4680     FALSE 0.147 143.000 0.000 NA   NA
 842487 842488 CPS_4680 CPS_4681     FALSE 0.061 315.000 0.000 NA   NA
 842490 842491 CPS_4683 CPS_4684     FALSE 0.146 148.000 0.000 NA   NA
 842492 842493 CPS_4685 CPS_4686     FALSE 0.136 197.000 0.000 NA   NA
 842493 842494 CPS_4686 CPS_4687     TRUE 0.942 29.000 0.203 1.000   NA
 842494 842495 CPS_4687 CPS_4688     TRUE 0.997 5.000 0.639 0.001   NA
 842495 842496 CPS_4688 CPS_4689     TRUE 0.999 -3.000 0.657 1.000 Y NA
 842496 842497 CPS_4689 CPS_4690   lldP TRUE 0.564 182.000 0.030 1.000 Y NA
 842500 842501 CPS_4693 CPS_4694     TRUE 0.973 54.000 0.556 NA   NA
 842502 842503 CPS_4695 CPS_4696     TRUE 0.838 36.000 0.000 0.022 Y NA
 842503 842504 CPS_4696 CPS_4697     FALSE 0.088 268.000 0.000 NA   NA
 842504 842505 CPS_4697 CPS_4698     FALSE 0.143 159.000 0.000 NA   NA
 842507 842508 CPS_4700 CPS_4701     TRUE 0.914 21.000 0.000 1.000 Y NA
 842508 842509 CPS_4701 CPS_4702     TRUE 0.909 122.000 0.500 1.000 N NA
 842510 842511 CPS_4703 CPS_4704     FALSE 0.139 184.000 0.000 NA   NA
 842511 842512 CPS_4704 CPS_4705     TRUE 0.999 -40.000 0.750 0.067 Y NA
 842513 842514 CPS_4706 CPS_4707     FALSE 0.146 147.000 0.000 NA   NA
 842515 842516 CPS_4708 CPS_4709     FALSE 0.147 139.000 0.000 NA   NA
 842519 842520 CPS_4712 CPS_4713     TRUE 0.998 9.000 0.726 NA   NA
 842520 842521 CPS_4713 CPS_4714     FALSE 0.282 289.000 0.091 NA   NA
 842521 842522 CPS_4714 CPS_4715     TRUE 0.420 47.000 0.000 NA   NA
 842522 842523 CPS_4715 CPS_4716   ahpF FALSE 0.109 241.000 0.000 NA   NA
 842523 842524 CPS_4716 CPS_4717 ahpF ahpC TRUE 0.944 240.000 0.551 1.000 Y NA
 842524 842525 CPS_4717 CPS_4718 ahpC oxyR FALSE 0.259 204.000 0.025 1.000 N NA
 842525 842526 CPS_4718 CPS_4719 oxyR   FALSE 0.187 191.000 0.000 1.000 N NA
 842528 842529 CPS_4721 CPS_4722     FALSE 0.132 209.000 0.000 NA   NA
 842529 842530 CPS_4722 CPS_4723     FALSE 0.195 160.000 0.000 1.000 N NA
 842530 842531 CPS_4723 CPS_4724     FALSE 0.022 460.000 0.000 NA   NA
 842531 842532 CPS_4724 CPS_4725     FALSE 0.138 187.000 0.000 NA   NA
 842532 842533 CPS_4725 CPS_4726     TRUE 0.984 -7.000 0.184 NA N NA
 842534 842535 CPS_4727 CPS_4728 tyrS   FALSE 0.074 291.000 0.000 NA   NA
 842535 842536 CPS_4728 CPS_4729   glsA FALSE 0.256 82.000 0.000 NA   NA
 842538 842539 CPS_4731 CPS_4732   nosZ TRUE 0.514 109.000 0.088 0.083 N NA
 842539 842540 CPS_4732 CPS_4733 nosZ nosD FALSE 0.020 978.000 0.029 0.002 N NA
 842540 842541 CPS_4733 CPS_4734 nosD nosF TRUE 0.999 5.000 0.857 1.000 N NA
 842541 842542 CPS_4734 CPS_4735 nosF nosY TRUE 0.999 0.000 1.000 NA   NA
 842542 842543 CPS_4735 CPS_4736 nosY nosL TRUE 0.995 0.000 0.385 NA   NA
 842545 842546 CPS_4738 CPS_4739     FALSE 0.199 98.000 0.000 NA   NA
 842546 842547 CPS_4739 CPS_4740     TRUE 0.636 23.000 0.000 NA   NA
 842548 842549 CPS_4741 CPS_4742     TRUE 0.738 28.000 0.032 NA   NA
 842549 842550 CPS_4742 CPS_4743     TRUE 0.842 46.000 0.117 1.000 N NA
 842550 842551 CPS_4743 CPS_4744     FALSE 0.307 88.000 0.000 1.000 N NA
 842551 842552 CPS_4744 CPS_4745   birA TRUE 0.982 -3.000 0.147 1.000 N NA
 842552 842553 CPS_4745 CPS_4746 birA murB TRUE 0.987 -7.000 0.211 1.000 N NA
 842553 842554 CPS_4746 CPS_4747 murB   FALSE 0.188 189.000 0.000 1.000 N NA
 842554 842555 CPS_4747 CPS_4748     TRUE 0.494 123.000 0.000 0.024 Y NA
 842555 842556 CPS_4748 CPS_4749     TRUE 0.972 45.000 0.444 1.000 N NA
 842557 842558 CPS_4750 CPS_4751   pspA2 FALSE 0.162 111.000 0.000 NA   NA
 842558 842559 CPS_4751 CPS_4752 pspA2   TRUE 0.718 94.000 0.042 NA Y NA
 842559 842560 CPS_4752 CPS_4753     FALSE 0.411 49.000 0.000 NA   NA
 842562 842563 CPS_4755 CPS_4756     TRUE 0.934 34.000 0.213 NA   NA
 842563 842564 CPS_4756 CPS_4757     TRUE 0.924 44.000 0.236 NA   NA
 842566 842567 CPS_4759 CPS_4760 cysJ cysI TRUE 0.999 0.000 0.791 0.000 Y NA
 842567 842568 CPS_4760 CPS_4761 cysI cysH TRUE 0.972 -7.000 0.116 1.000 N NA
 842569 842570 CPS_4762 CPS_4763     FALSE 0.138 155.000 0.000 1.000   NA
 842570 842571 CPS_4763 CPS_4764   tuf1 FALSE 0.264 320.000 0.000 1.000 Y NA
 842571 842572 CPS_4764 CPS_4765 tuf1 fusA2 TRUE 0.955 94.000 0.400 0.001 Y NA
 842572 842573 CPS_4765 CPS_4766 fusA2 rpsG TRUE 0.942 255.000 0.579 1.000 Y NA
 842573 842574 CPS_4766 CPS_4767 rpsG rpsL TRUE 0.967 119.000 0.620 0.002 Y NA
 842574 842575 CPS_4767 CPS_4768 rpsL rpoC FALSE 0.129 487.000 0.122 1.000 N NA
 842575 842576 CPS_4768 CPS_4769 rpoC rpoB TRUE 0.965 109.000 0.851 0.000   NA
 842576 842577 CPS_4769 CPS_4770 rpoB rplL TRUE 0.605 256.000 0.223 1.000   NA
 842577 842578 CPS_4770 CPS_4771 rplL rplJ TRUE 0.986 122.000 0.884 1.000 Y NA
 842578 842579 CPS_4771 CPS_4772 rplJ rplA TRUE 0.699 366.000 0.302 1.000 Y NA
 842579 842580 CPS_4772 CPS_4773 rplA rplK TRUE 0.999 4.000 0.838 0.012 Y NA
 842580 842581 CPS_4773 CPS_4774 rplK   FALSE 0.082 272.000 0.000 1.000   NA
 842582 842583 CPS_4775 CPS_4776     FALSE 0.193 98.000 0.000 1.000   NA
 842584 842585 CPS_4777 CPS_4778 nusG secE TRUE 0.864 18.000 0.037 1.000 N NA
 842585 842586 CPS_4778 CPS_4779 secE   FALSE 0.213 94.000 0.000 NA   NA
 842586 842587 CPS_4779 CPS_4780   tuf2 FALSE 0.021 466.000 0.000 NA   NA
 842587 842588 CPS_4780 CPS_4781 tuf2   FALSE 0.252 83.000 0.000 NA   NA
 842588 842589 CPS_4781 CPS_4782     TRUE 0.695 17.000 0.000 NA   NA
 842589 842590 CPS_4782 CPS_4783     FALSE 0.339 62.000 0.000 NA   NA
 842590 842591 CPS_4783 CPS_4784     FALSE 0.344 61.000 0.000 NA   NA
 842591 842592 CPS_4784 CPS_4785     FALSE 0.084 276.000 0.000 NA   NA
 842592 842593 CPS_4785 CPS_4786     FALSE 0.136 193.000 0.000 NA   NA
 842596 842597 CPS_4789 CPS_4790     FALSE 0.072 290.000 0.000 1.000   NA
 842597 842598 CPS_4790 CPS_4791     FALSE 0.013 552.000 0.000 0.083   NA
 842598 842599 CPS_4791 CPS_4792   topB FALSE 0.185 201.000 0.000 1.000 N NA
 842601 842602 CPS_4794 CPS_4795     FALSE 0.111 239.000 0.000 NA   NA
 842608 842609 CPS_4801 CPS_4802     FALSE 0.010 674.000 0.000 NA   NA
 842610 842611 CPS_4803 CPS_4804     FALSE 0.230 89.000 0.000 NA   NA
 842611 842612 CPS_4804 CPS_4805   lpdA FALSE 0.138 156.000 0.000 1.000   NA
 842612 842613 CPS_4805 CPS_4806 lpdA aceF TRUE 0.945 163.000 0.463 1.000 Y NA
 842613 842614 CPS_4806 CPS_4807 aceF   FALSE 0.165 109.000 0.000 NA   NA
 842614 842615 CPS_4807 CPS_4808   aceE TRUE 0.448 42.000 0.000 NA   NA
 842615 842616 CPS_4808 CPS_4809 aceE pdhR FALSE 0.107 511.000 0.105 1.000 N NA
 842616 842617 CPS_4809 CPS_4810 pdhR   FALSE 0.199 264.000 0.029 1.000 N NA
 842617 842618 CPS_4810 CPS_4811   ampD TRUE 0.996 2.000 0.249 1.000 Y NA
 842619 842620 CPS_4812 CPS_4813   nadC TRUE 0.776 14.000 0.011 1.000   NA
 842623 842624 CPS_4816 CPS_4817   msrA2 FALSE 0.213 94.000 0.000 NA   NA
 842625 842626 CPS_4818 CPS_4819     TRUE 0.993 -7.000 0.197 1.000 Y NA
 842628 842629 CPS_4821 CPS_4822   rmf2 FALSE 0.011 639.000 0.000 NA   NA
 842630 842631 CPS_4823 CPS_4824 hemN   TRUE 0.742 125.000 0.244 NA   NA
 842631 842632 CPS_4824 CPS_4825     TRUE 0.998 6.000 0.679 NA   NA
 842632 842633 CPS_4825 CPS_4826     FALSE 0.151 125.000 0.000 NA   NA
 842635 842636 CPS_4828 CPS_4829     TRUE 0.796 15.000 0.017 NA   NA
 842636 842637 CPS_4829 CPS_4830     TRUE 0.433 61.000 0.000 1.000 N NA
 842637 842638 CPS_4830 CPS_4831     FALSE 0.149 128.000 0.000 NA   NA
 842639 842640 CPS_4832 CPS_4833 proB proA TRUE 0.771 58.000 0.015 0.001 Y NA
 842643 842644 CPS_4836 CPS_4837     TRUE 0.725 79.000 0.022 NA Y NA
 842644 842645 CPS_4837 CPS_4838     FALSE 0.031 408.000 0.000 NA   NA
 842645 842646 CPS_4838 CPS_4839   ilvC FALSE 0.143 159.000 0.000 NA   NA
 842649 842650 CPS_4842 CPS_4843 ilvL ilvG FALSE 0.106 245.000 0.000 NA   NA
 842650 842651 CPS_4843 CPS_4844 ilvG ilvM TRUE 0.999 11.000 0.943 0.001   NA
 842651 842652 CPS_4844 CPS_4845 ilvM ilvE TRUE 0.692 123.000 0.205 1.000   NA
 842652 842653 CPS_4845 CPS_4846 ilvE ilvD TRUE 0.650 216.000 0.075 1.000 Y NA
 842653 842654 CPS_4846 CPS_4847 ilvD ilvA TRUE 0.725 189.000 0.106 1.000 Y NA
 842655 842656 CPS_4848 CPS_4849     TRUE 0.453 41.000 0.000 NA   NA
 842656 842657 CPS_4849 CPS_4850     FALSE 0.046 353.000 0.000 NA   NA
 842657 842658 CPS_4850 CPS_4851     FALSE 0.336 104.000 0.039 1.000   NA
 842659 842660 CPS_4852 CPS_4853     FALSE 0.095 259.000 0.000 NA   NA
 842660 842661 CPS_4853 CPS_4854     FALSE 0.135 198.000 0.000 NA   NA
 842661 842662 CPS_4854 CPS_4855     FALSE 0.299 73.000 0.000 NA   NA
 842662 842663 CPS_4855 CPS_4856     TRUE 0.723 122.000 0.222 NA   NA
 842663 842664 CPS_4856 CPS_4857   cusB TRUE 0.999 0.000 0.750 1.000 Y NA
 842664 842665 CPS_4857 CPS_4858 cusB cusA TRUE 0.999 -3.000 0.750 1.000 N NA
 842665 842666 CPS_4858 CPS_4859 cusA   TRUE 0.859 11.000 0.000 1.000 N NA
 842666 842667 CPS_4859 CPS_4860     FALSE 0.339 62.000 0.000 NA   NA
 842668 842669 CPS_4861 CPS_4862     TRUE 0.855 267.000 0.562 NA   NA
 842669 842670 CPS_4862 CPS_4863     FALSE 0.143 168.000 0.000 NA   NA
 842671 842672 CPS_4864 CPS_4865     TRUE 0.995 -7.000 0.269 0.000 Y NA
 842672 842673 CPS_4865 CPS_4866     TRUE 0.973 47.000 0.463 NA N NA
 842673 842674 CPS_4866 CPS_4867     TRUE 0.922 13.000 0.047 NA N NA
 842674 842675 CPS_4867 CPS_4868     TRUE 0.664 134.000 0.066 1.000 Y NA
 842675 842676 CPS_4868 CPS_4869     TRUE 0.754 121.000 0.250 NA   NA
 842676 842677 CPS_4869 CPS_4870     TRUE 0.979 25.000 0.350 NA   NA
 842677 842678 CPS_4870 CPS_4871   allA TRUE 0.786 79.000 0.176 1.000   NA
 842678 842679 CPS_4871 CPS_4872 allA guaD TRUE 0.739 108.000 0.087 1.000 Y NA
 842679 842680 CPS_4872 CPS_4873 guaD   FALSE 0.161 354.000 0.077 1.000   NA
 842680 842681 CPS_4873 CPS_4874     TRUE 0.845 4.000 0.000 1.000   NA
 842683 842684 CPS_4876 CPS_4877     FALSE 0.138 154.000 0.000 1.000   NA
 842688 842689 CPS_4881 CPS_4882     FALSE 0.019 498.000 0.000 NA   NA
 842689 842690 CPS_4882 CPS_4883     FALSE 0.051 340.000 0.000 NA   NA
 842691 842692 CPS_4884 CPS_4885     FALSE 0.147 143.000 0.000 NA   NA
 842692 842693 CPS_4885 CPS_4886     FALSE 0.078 280.000 0.000 1.000   NA
 842693 842694 CPS_4886 CPS_4887     TRUE 0.868 74.000 0.097 NA Y NA
 842694 842695 CPS_4887 CPS_4888     TRUE 0.946 110.000 0.426 NA Y NA
 842696 842697 CPS_4889 CPS_4890     FALSE 0.066 303.000 0.000 NA   NA
 842697 842698 CPS_4890 CPS_4891     FALSE 0.142 174.000 0.000 NA   NA
 842698 842699 CPS_4891 CPS_4892     FALSE 0.122 223.000 0.000 NA   NA
 842699 842700 CPS_4892 CPS_4893     TRUE 0.556 30.000 0.000 NA   NA
 842700 842701 CPS_4893 CPS_4894     FALSE 0.129 215.000 0.000 NA   NA
 842701 842702 CPS_4894 CPS_4895     FALSE 0.060 311.000 0.000 1.000   NA
 842703 842704 CPS_4896 CPS_4897     FALSE 0.143 165.000 0.000 NA   NA
 842705 842706 CPS_4898 CPS_4899     FALSE 0.379 54.000 0.000 NA   NA
 842709 842710 CPS_4902 CPS_4903     FALSE 0.146 146.000 0.000 NA   NA
 842710 842711 CPS_4903 CPS_4904     TRUE 0.924 20.000 0.118 NA   NA
 842713 842714 CPS_4906 CPS_4907     TRUE 0.661 20.000 0.000 NA   NA
 842714 842715 CPS_4907 CPS_4908     FALSE 0.360 57.000 0.000 NA   NA
 842717 842718 CPS_4910 CPS_4911   dpaL FALSE 0.151 125.000 0.000 NA   NA
 842718 842719 CPS_4911 CPS_4912 dpaL   FALSE 0.019 477.000 0.000 1.000   NA
 842719 842720 CPS_4912 CPS_4913     FALSE 0.166 106.000 0.000 1.000   NA
 842720 842721 CPS_4913 CPS_4914     TRUE 0.960 47.000 0.357 1.000 N NA
 842721 842722 CPS_4914 CPS_4915     TRUE 0.985 48.000 0.429 NA Y NA
 842722 842723 CPS_4915 CPS_4916     TRUE 0.979 169.000 0.778 NA Y NA
 842723 842724 CPS_4916 CPS_4917     TRUE 0.910 62.000 0.286 1.000   NA
 842724 842725 CPS_4917 CPS_4918     TRUE 0.932 50.000 0.286 NA   NA
 842729 842730 CPS_4922 CPS_4923     TRUE 0.498 35.000 0.000 NA   NA
 842730 842731 CPS_4923 CPS_4924     FALSE 0.134 184.000 0.000 1.000   NA
 842731 842732 CPS_4924 CPS_4925     TRUE 0.839 2.000 0.000 0.021   NA
 842732 842733 CPS_4925 CPS_4926     TRUE 0.705 70.000 0.000 0.021 Y NA
 842734 842735 CPS_4927 CPS_4928     TRUE 0.967 6.000 0.000 0.066 Y NA
 842735 842736 CPS_4928 CPS_4929     FALSE 0.265 78.000 0.000 1.000   NA
 842736 842737 CPS_4929 CPS_4930     TRUE 0.779 11.000 0.000 0.038   NA
 842738 842739 CPS_4931 CPS_4932 ggt2   FALSE 0.117 232.000 0.000 NA   NA
 842740 842741 CPS_4933 CPS_4934     TRUE 0.474 173.000 0.000 0.034 Y NA
 842741 842742 CPS_4934 CPS_4935     TRUE 0.989 12.000 0.167 0.082 Y NA
 842744 842745 CPS_4937 CPS_4938     FALSE 0.011 622.000 0.000 1.000   NA
 842747 842748 CPS_4940 CPS_4941     FALSE 0.041 368.000 0.000 NA   NA
 842749 842750 CPS_4942 CPS_4943 glmS   TRUE 0.934 81.000 0.412 1.000 N NA
 842750 842751 CPS_4943 CPS_4944   glmU FALSE 0.205 202.000 0.010 1.000 N NA
 842751 842752 CPS_4944 CPS_4945 glmU nasA FALSE 0.217 113.000 0.000 1.000 N NA
 842752 842753 CPS_4945 CPS_4946 nasA nirD TRUE 0.457 76.000 0.022 1.000 N NA
 842753 842754 CPS_4946 CPS_4947 nirD nirB TRUE 0.995 16.000 0.656 0.000 N NA
 842754 842755 CPS_4947 CPS_4948 nirB   FALSE 0.043 412.000 0.000 1.000 N NA
 842755 842756 CPS_4948 CPS_4949     FALSE 0.338 278.000 0.000 1.000 Y NA
 842756 842757 CPS_4949 CPS_4950   narK TRUE 0.929 107.000 0.583 1.000   NA
 842757 842758 CPS_4950 CPS_4951 narK   FALSE 0.077 285.000 0.000 NA   NA
 842758 842759 CPS_4951 CPS_4952     FALSE 0.289 168.000 0.040 NA   NA
 842759 842760 CPS_4952 CPS_4953     TRUE 0.999 0.000 0.916 NA   NA
 842761 842762 CPS_4954 CPS_4955     TRUE 0.927 30.000 0.158 1.000 N NA
 842762 842763 CPS_4955 CPS_4956     FALSE 0.050 395.000 0.000 1.000 N NA
 842763 842764 CPS_4956 CPS_4957     TRUE 0.425 226.000 0.000 0.026 Y NA
 842768 842769 CPS_4961 CPS_4962     FALSE 0.121 225.000 0.000 NA   NA
 842769 842770 CPS_4962 CPS_4963     FALSE 0.095 259.000 0.000 NA   NA
 842770 842771 CPS_4963 CPS_4964     FALSE 0.146 146.000 0.000 NA   NA
 842774 842775 CPS_4967 CPS_4968     FALSE 0.143 163.000 0.000 NA   NA
 842776 842777 CPS_4969 CPS_4970   aspC FALSE 0.112 238.000 0.000 NA   NA
 842777 842778 CPS_4970 CPS_4971 aspC gmk FALSE 0.195 170.000 0.000 1.000 N NA
 842778 842779 CPS_4971 CPS_4972 gmk rpoZ TRUE 0.914 105.000 0.471 1.000 N NA
 842779 842780 CPS_4972 CPS_4973 rpoZ spoT TRUE 0.796 296.000 0.291 1.000 Y NA
 842780 842781 CPS_4973 CPS_4974 spoT   TRUE 0.915 51.000 0.215 NA N NA
 842781 842782 CPS_4974 CPS_4975   spoU TRUE 0.632 201.000 0.057 NA Y NA
 842782 842783 CPS_4975 CPS_4976 spoU recG TRUE 0.805 40.000 0.076 1.000 N NA
 842784 842785 CPS_4977 CPS_4978   polA FALSE 0.367 56.000 0.000 NA   NA
 842786 842787 CPS_4979 CPS_4980     FALSE 0.113 237.000 0.000 NA   NA
 842789 842790 CPS_4982 CPS_4983     FALSE 0.114 229.000 0.000 1.000   NA
 842791 842792 CPS_4984 CPS_4985 gor   FALSE 0.057 373.000 0.000 1.000 N NA
 842793 842794 CPS_4986 CPS_4987 prlC   FALSE 0.268 172.000 0.024 1.000 N NA
 842795 842796 CPS_4988 CPS_4989     FALSE 0.142 175.000 0.000 NA   NA
 842798 842799 CPS_4991 CPS_4992     FALSE 0.142 177.000 0.000 NA   NA
 842799 842800 CPS_4992 CPS_4993     TRUE 0.841 6.000 0.000 NA   NA
 842800 842801 CPS_4993 CPS_4994     FALSE 0.088 268.000 0.000 NA   NA
 842801 842802 CPS_4994 CPS_4995     FALSE 0.161 112.000 0.000 NA   NA
 842802 842803 CPS_4995 CPS_4996     FALSE 0.209 95.000 0.000 NA   NA
 842803 842804 CPS_4996 CPS_4997     FALSE 0.030 411.000 0.000 NA   NA
 842804 842805 CPS_4997 CPS_4998     FALSE 0.137 190.000 0.000 NA   NA
 842806 842807 CPS_4999 CPS_5000     TRUE 0.497 50.000 0.000 1.000 N NA
 842807 842808 CPS_5000 CPS_5001     TRUE 0.892 4.000 0.000 1.000 N NA
 842808 842809 CPS_5001 CPS_5002     TRUE 0.680 27.000 0.000 1.000 N NA
 842809 842810 CPS_5002 CPS_5003     TRUE 0.724 -55.000 0.000 NA   NA
 842810 842811 CPS_5003 CPS_5004     FALSE 0.147 142.000 0.000 NA   NA
 842811 842812 CPS_5004 CPS_5005     FALSE 0.199 98.000 0.000 NA   NA
 842812 842813 CPS_5005 CPS_5006     FALSE 0.357 56.000 0.000 1.000   NA
 842813 842814 CPS_5006 CPS_5007     TRUE 0.747 14.000 0.000 NA   NA
 842814 842815 CPS_5007 CPS_5008     TRUE 0.424 46.000 0.000 NA   NA
 842816 842817 CPS_5009 CPS_5010     TRUE 0.675 18.000 0.000 1.000   NA
 842817 842818 CPS_5010 CPS_5011     TRUE 0.488 35.000 0.000 1.000   NA
 842818 842819 CPS_5011 CPS_5012     TRUE 0.823 -7.000 0.000 1.000   NA
 842819 842820 CPS_5012 CPS_5013     TRUE 0.867 0.000 0.000 NA   NA
 842820 842821 CPS_5013 CPS_5014     TRUE 0.475 38.000 0.000 NA   NA
 842822 842823 CPS_5015 CPS_5016     TRUE 0.858 -10.000 0.000 NA N NA
 842823 842824 CPS_5016 CPS_5017     FALSE 0.307 88.000 0.000 1.000 N NA
 842824 842825 CPS_5017 CPS_5018     FALSE 0.408 66.000 0.000 1.000 N NA
 842825 842826 CPS_5018 CPS_5019     TRUE 0.904 0.000 0.000 1.000 N NA
 842826 842827 CPS_5019 CPS_5020     TRUE 0.937 0.000 0.024 NA N NA
 842827 842828 CPS_5020 CPS_5021     TRUE 0.935 -3.000 0.040 NA   NA
 842828 842829 CPS_5021 CPS_5022     TRUE 0.854 -3.000 0.000 NA   NA
 842831 842832 CPS_5024 CPS_5025     FALSE 0.353 59.000 0.000 NA   NA
 842832 842833 CPS_5025 CPS_5026     TRUE 0.991 53.000 0.633 0.082 Y NA
 842833 842834 CPS_5026 CPS_5027     TRUE 0.909 123.000 0.500 1.000 N NA
 842834 842835 CPS_5027 CPS_5028     TRUE 0.729 -40.000 0.000 NA   NA
 842835 842836 CPS_5028 CPS_5029     TRUE 0.862 2.000 0.000 NA   NA
 842837 842838 CPS_5030 CPS_5031     TRUE 0.996 33.000 0.693 0.066 Y NA
 842838 842839 CPS_5031 CPS_5032     FALSE 0.215 121.000 0.000 NA N NA
 842839 842840 CPS_5032 CPS_5033     TRUE 0.990 28.000 0.579 NA N NA
 842840 842841 CPS_5033 CPS_5034     FALSE 0.126 219.000 0.000 NA   NA
 842841 842842 CPS_5034 CPS_5035     FALSE 0.081 280.000 0.000 NA   NA
 842842 842843 CPS_5035 CPS_5036     TRUE 0.729 15.000 0.000 NA   NA
 842843 842844 CPS_5036 CPS_5037     FALSE 0.072 294.000 0.000 NA   NA
 842844 842845 CPS_5037 CPS_5038     FALSE 0.143 164.000 0.000 NA   NA
 842845 842846 CPS_5038 CPS_5039     FALSE 0.243 85.000 0.000 NA   NA
 842846 842847 CPS_5039 CPS_5040     TRUE 0.997 0.000 0.512 NA   NA
 842847 842848 CPS_5040 CPS_5041     TRUE 0.943 69.000 0.390 1.000 N NA
 842848 842849 CPS_5041 CPS_5042     TRUE 0.999 9.000 0.760 0.082 Y NA
 842849 842850 CPS_5042 CPS_5043     TRUE 0.981 50.000 0.649 NA   NA
 842850 842851 CPS_5043 CPS_5044     FALSE 0.143 159.000 0.000 NA   NA
 842851 842852 CPS_5044 CPS_5045     TRUE 0.998 15.000 0.827 1.000 N NA
 842852 842853 CPS_5045 CPS_5046   gidB TRUE 0.705 292.000 0.339 1.000 N NA
 842853 842854 CPS_5046 CPS_5047 gidB gidA TRUE 0.954 74.000 0.466 1.000 N NA
 842854 842855 CPS_5047 CPS_5048 gidA mioC FALSE 0.032 459.000 0.000 1.000 N NA
 842855 842856 CPS_5048 CPS_5049 mioC trmE FALSE 0.073 349.000 0.023 1.000   NA
 842856 842857 CPS_5049 CPS_5050 trmE   TRUE 0.706 142.000 0.221 1.000   NA
 842857 842858 CPS_5050 CPS_5051     TRUE 0.885 124.000 0.461 NA   NA
 842858 842859 CPS_5051 CPS_5052   rnpA TRUE 0.994 -33.000 0.540 NA   NA
 842859 842860 CPS_5052 CPS_5053 rnpA rpmH TRUE 0.989 44.000 0.787 1.000   NA
 842860 842861 CPS_5053 CPS_5054 rpmH   FALSE 0.146 146.000 0.000 NA   NA