MicrobesOnline Operon Predictions for Chlamydophila pneumoniae J138

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 51548 51549 CPj0002 CPj0003 gatC gatA TRUE 0.997 17.000 0.643 0.005 Y NA
 51549 51550 CPj0003 CPj0004 gatA gatB TRUE 0.992 -3.000 0.492 0.005 Y NA
 51550 51551 CPj0004 CPj0005 gatB pmp_1 FALSE 0.049 291.000 0.000 1.000   NA
 51553 51554 CPj0007 CPj0008     FALSE 0.025 476.000 0.000 NA   NA
 51554 51555 CPj0008 CPj0009     FALSE 0.128 127.000 0.000 NA   NA
 51555 51556 CPj0009 CPj0010     FALSE 0.030 312.000 0.000 NA   NA
 51556 51557 CPj0010 CPj0011     FALSE 0.108 143.000 0.000 NA   NA
 51557 51558 CPj0011 CPj0012     TRUE 0.711 27.000 0.000 NA   NA
 51558 51559 CPj0012 CPj0013A   pmp_2_1 FALSE 0.027 369.000 0.000 NA   NA
 51559 51560 CPj0013A CPj0013B pmp_2_1 pmp_2_2 FALSE 0.389 -69.000 0.000 NA   NA
 51560 51561 CPj0013B CPj0014 pmp_2_2 pmp_3_1 FALSE 0.039 256.000 0.000 NA   NA
 51561 51562 CPj0014 CPj0015 pmp_3_1 pmp_3_2 FALSE 0.396 -66.000 0.000 NA   NA
 51562 51563 CPj0015 CPj0016A pmp_3_2 pmp_4_1 FALSE 0.042 239.000 0.000 NA   NA
 51563 51564 CPj0016A CPj0016B pmp_4_1 pmp_4_1_2 TRUE 0.676 -3.000 0.000 NA   NA
 51564 51565 CPj0016B CPj0017 pmp_4_1_2 pmp_4_2 TRUE 0.488 -97.000 0.000 1.000   NA
 51565 51566 CPj0017 CPj0018 pmp_4_2 pmp_5_1 FALSE 0.043 349.000 0.000 1.000   NA
 51566 51567 CPj0018 CPj0019 pmp_5_1 pmp_5_2 TRUE 0.946 16.000 0.000 0.039   NA
 51568 51569 CPj0020 CPj0021     TRUE 0.970 17.000 0.500 NA   NA
 51569 51570 CPj0021 CPj0022   maf TRUE 0.739 -18.000 0.017 NA N NA
 51570 51571 CPj0022 CPj0023 maf yjjK TRUE 0.844 29.000 0.017 NA   NA
 51571 51572 CPj0023 CPj0024 yjjK xerC TRUE 0.577 55.000 0.010 1.000   NA
 51572 51573 CPj0024 CPj0025 xerC atsA FALSE 0.387 85.000 0.009 1.000   NA
 51573 51574 CPj0025 CPj0026 atsA   FALSE 0.093 155.000 0.000 NA   NA
 51574 51575 CPj0026 CPj0027   lon FALSE 0.099 150.000 0.000 NA   NA
 51575 51576 CPj0027 CPj0028 lon   FALSE 0.030 306.000 0.000 NA   NA
 51576 51577 CPj0028 CPj0029     FALSE 0.262 62.000 0.000 NA   NA
 51578 51579 CPj0030 CPj0031 gcp_1 rs21 FALSE 0.133 179.000 0.006 1.000   NA
 51579 51580 CPj0031 CPj0032 rs21 dnaJ TRUE 0.894 36.000 0.412 1.000   NA
 51580 51581 CPj0032 CPj0033 dnaJ pdhA_pdhB TRUE 0.650 37.000 0.000 1.000 N NA
 51582 51583 CPj0034 CPj0035     FALSE 0.186 109.000 0.002 NA   NA
 51584 51585 CPj0036 CPj0037   ptsH TRUE 0.606 -7.000 0.000 NA   NA
 51585 51586 CPj0037 CPj0038 ptsH ptsI TRUE 0.991 1.000 0.026 0.007 Y NA
 51587 51588 CPj0039 CPj0040 ybaB dnaX_1 TRUE 0.649 65.000 0.411 NA   NA
 51589 51590 CPj0041 CPj0042     FALSE 0.284 58.000 0.000 NA   NA
 51590 51591 CPj0042 CPj0043     FALSE 0.036 262.000 0.000 NA   NA
 51591 51592 CPj0043 CPj0044     TRUE 0.454 44.000 0.000 NA   NA
 51592 51593 CPj0044 CPj0045     FALSE 0.032 288.000 0.000 NA   NA
 51593 51594 CPj0045 CPj0047     FALSE 0.059 189.000 0.000 NA   NA
 51594 51595 CPj0047 CPj0048   yqfF TRUE 0.614 32.000 0.000 NA   NA
 51596 51597 CPj0049 CPj0050     FALSE 0.041 243.000 0.000 NA   NA
 51599 51600 CPj0052 CPj0053 hemC sms TRUE 0.699 -22.000 0.007 1.000 N NA
 51600 51601 CPj0053 CPj0054 sms rnc TRUE 0.675 -34.000 0.007 1.000 N NA
 51602 51603 CPj0055 CPj0056   mrsA FALSE 0.086 360.000 0.034 NA   NA
 51603 51604 CPj0056 CPj0057 mrsA sodM FALSE 0.255 185.000 0.067 1.000 N NA
 51604 51605 CPj0057 CPj0058 sodM accD FALSE 0.405 82.000 0.009 1.000 N NA
 51605 51606 CPj0058 CPj0059 accD dut TRUE 0.606 51.000 0.008 1.000 N NA
 51606 51607 CPj0059 CPj0060 dut ptsN_1 TRUE 0.902 2.000 0.008 1.000 N NA
 51607 51608 CPj0060 CPj0061 ptsN_1 ptsN_2 TRUE 0.995 3.000 0.231 0.003 Y NA
 51608 51609 CPj0061 CPj0062 ptsN_2   TRUE 0.485 97.000 0.231 NA   NA
 51609 51610 CPj0062 CPj0063     FALSE 0.025 419.000 0.000 NA   NA
 51610 51611 CPj0063 CPj0064     FALSE 0.199 76.000 0.000 NA   NA
 51611 51612 CPj0064 CPj0065     FALSE 0.028 345.000 0.000 NA   NA
 51612 51613 CPj0065 CPj0066     FALSE 0.035 271.000 0.000 NA   NA
 51613 51614 CPj0066 CPj0067     FALSE 0.031 295.000 0.000 NA   NA
 397645 51617 CPjt01 CPj0071 tRNA-Met   FALSE 0.209 74.000 0.000 NA   NA
 51617 51618 CPj0071 CPj0072     TRUE 0.953 9.000 0.054 NA   NA
 51621 51622 CPj0075 CPj0076 secE nusG TRUE 0.979 5.000 0.843 1.000 N NA
 51622 51623 CPj0076 CPj0077 nusG rl11 TRUE 0.640 107.000 0.681 1.000 N NA
 51623 51624 CPj0077 CPj0078 rl11 rl1 TRUE 0.994 27.000 0.838 0.074 Y NA
 51624 51625 CPj0078 CPj0079 rl1 rl10 TRUE 0.994 16.000 0.302 1.000 Y NA
 51625 51626 CPj0079 CPj0080 rl10 rl7 TRUE 0.976 44.000 0.884 1.000 Y NA
 51626 51627 CPj0080 CPj0081 rl7 rpoB TRUE 0.456 137.000 0.223 1.000 N NA
 51627 51628 CPj0081 CPj0082 rpoB rpoC TRUE 0.996 24.000 0.851 0.003 Y NA
 51628 51629 CPj0082 CPj0083 rpoC tal FALSE 0.297 109.000 0.006 1.000 N NA
 51629 51630 CPj0083 CPj0084 tal   TRUE 0.829 47.000 0.667 NA   NA
 51632 51633 CPj0086 CPj0087 atpE   FALSE 0.369 49.000 0.000 NA   NA
 51633 51634 CPj0087 CPj0088   atpA TRUE 0.918 -6.000 0.633 NA   NA
 51634 51635 CPj0088 CPj0089 atpA atpB TRUE 0.997 5.000 0.806 0.011 Y NA
 51635 51636 CPj0089 CPj0090 atpB atpD TRUE 0.988 -15.000 0.903 0.011 Y NA
 51636 51637 CPj0090 CPj0091 atpD atpI TRUE 0.986 -9.000 0.270 0.011 Y NA
 51637 51638 CPj0091 CPj0092 atpI atpK TRUE 0.777 95.000 0.848 0.011   NA
 51638 51639 CPj0092 CPj0093 atpK   TRUE 0.671 -67.000 0.030 NA   NA
 51639 51640 CPj0093 CPj0094   valS FALSE 0.174 134.000 0.006 NA   NA
 51640 51641 CPj0094 CPj0095 valS pknD TRUE 0.910 21.000 0.006 1.000 N NA
 51644 51645 CPj0098 CPj0098.1 htrB_2 htrB_1 TRUE 0.703 -118.000 0.000 0.003   NA
 51647 51648 CPj0100 CPj0101   ybbP TRUE 0.851 -3.000 0.018 NA   NA
 51649 51650 CPj0102 CPj0103 cydA cydB TRUE 0.997 11.000 0.622 0.023 Y NA
 51651 51652 CPj0104 CPj0105     TRUE 0.447 151.000 0.750 NA   NA
 51654 51655 CPj0107 CPj0108     FALSE 0.117 138.000 0.000 NA   NA
 51657 51658 CPj0110 CPj0111 lepB   FALSE 0.238 197.000 0.333 NA   NA
 51659 51660 CPj0112 CPj0113 rl31 pfrA FALSE 0.375 239.000 0.005 1.000 Y NA
 51660 51661 CPj0113 CPj0114 pfrA hemK TRUE 0.958 -10.000 0.009 1.000 Y NA
 51661 51662 CPj0114 CPj0115 hemK ffh TRUE 0.926 15.000 0.005 1.000 N NA
 51662 51663 CPj0115 CPj0116 ffh rs16 TRUE 0.909 -9.000 0.361 1.000 N NA
 51663 51664 CPj0116 CPj0117 rs16 trmD TRUE 0.993 14.000 0.033 1.000 Y NA
 51664 51665 CPj0117 CPj0118 trmD rl19 TRUE 0.988 28.000 0.567 1.000 Y NA
 51665 51666 CPj0118 CPj0119 rl19 rnhB_1 TRUE 0.695 56.000 0.066 1.000 N NA
 51666 51667 CPj0119 CPj0120 rnhB_1 gmk TRUE 0.808 -3.000 0.003 1.000 N NA
 51667 51668 CPj0120 CPj0121 gmk   TRUE 0.725 -3.000 0.003 NA   NA
 51668 51669 CPj0121 CPj0122   metG TRUE 0.840 0.000 0.008 NA   NA
 51671 51672 CPj0124 CPj0125     TRUE 0.755 25.000 0.000 NA   NA
 51672 51673 CPj0125 CPj0126     FALSE 0.054 201.000 0.000 NA   NA
 397644 51677 CPjt04 CPj0131 tRNA-Asn   FALSE 0.085 160.000 0.000 NA   NA
 51677 51678 CPj0131 CPj0132     TRUE 0.800 4.000 0.000 NA   NA
 51679 51680 CPj0133 CPj0134   groEL_1 TRUE 0.437 130.000 0.400 NA   NA
 51680 51681 CPj0134 CPj0135 groEL_1 groES TRUE 0.981 42.000 0.412 0.015 Y NA
 51681 51682 CPj0135 CPj0136 groES pepF TRUE 0.496 118.000 0.188 1.000 N NA
 51682 51683 CPj0136 CPj0137 pepF ybgI FALSE 0.331 98.000 0.013 NA   NA
 51683 51684 CPj0137 CPj0138 ybgI hemL FALSE 0.025 443.000 0.000 NA   NA
 51684 51685 CPj0138 CPj0139 hemL yqgE FALSE 0.322 71.000 0.006 NA N NA
 51685 51686 CPj0139 CPj0140 yqgE yqdE TRUE 0.936 14.000 0.012 NA   NA
 51686 51687 CPj0140 CPj0141 yqdE rpiA TRUE 0.822 -3.000 0.011 NA   NA
 51687 51688 CPj0141 CPj0142 rpiA   TRUE 0.853 11.000 0.000 NA   NA
 51688 51689 CPj0142 CPj0143   yxjG_1 FALSE 0.137 120.000 0.000 NA   NA
 51690 51691 CPj0144 CPj0145 clpB   FALSE 0.128 214.000 0.009 1.000   NA
 51691 51692 CPj0145 CPj0146     FALSE 0.041 241.000 0.000 NA   NA
 51692 51693 CPj0146 CPj0147     FALSE 0.128 127.000 0.000 NA   NA
 51693 51694 CPj0147 CPj0148     FALSE 0.071 172.000 0.000 NA   NA
 51694 51695 CPj0148 CPj0149   dnlJ TRUE 0.927 10.000 0.006 1.000   NA
 51695 51696 CPj0149 CPj0150 dnlJ   FALSE 0.183 131.000 0.006 NA   NA
 51697 51698 CPj0151 CPj0152 mhpA   FALSE 0.381 173.000 0.857 NA   NA
 51699 51700 CPj0153 CPj0154 leuS gseA TRUE 0.820 -3.000 0.006 1.000 N NA
 397610 397611 CPjt05 CPjt06 tRNA-Met tRNA-Met TRUE 0.850 16.000 0.000 NA   NA
 397611 51701 CPjt06 CPj0155 tRNA-Met   FALSE 0.169 95.000 0.000 NA   NA
 51701 51702 CPj0155 CPj0156     FALSE 0.199 76.000 0.000 NA   NA
 51702 51703 CPj0156 CPj0157     FALSE 0.065 179.000 0.000 NA   NA
 51703 51704 CPj0157 CPj0158     FALSE 0.075 168.000 0.000 NA   NA
 51704 51705 CPj0158 CPj0159     TRUE 0.580 34.000 0.000 NA   NA
 51705 51706 CPj0159 CPj0160   pfkA_1 FALSE 0.031 296.000 0.000 NA   NA
 51706 51707 CPj0160 CPj0161 pfkA_1   TRUE 0.976 4.000 0.857 1.000   NA
 51707 51708 CPj0161 CPj0162     FALSE 0.066 178.000 0.000 NA   NA
 51709 51710 CPj0163 CPj0164     FALSE 0.162 101.000 0.000 NA   NA
 51710 51711 CPj0164 CPj0165     TRUE 0.676 -3.000 0.000 NA   NA
 51711 51712 CPj0165 CPj0166     TRUE 0.434 45.000 0.000 NA   NA
 51713 51714 CPj0167 CPj0168     FALSE 0.157 108.000 0.000 NA   NA
 51714 51715 CPj0168 CPj0169     FALSE 0.242 66.000 0.000 NA   NA
 51715 51716 CPj0169 CPj0170     FALSE 0.024 521.000 0.000 NA   NA
 51716 51717 CPj0170 CPj0171   guaA FALSE 0.199 120.000 0.000 1.000   NA
 51717 51718 CPj0171 CPj0172 guaA guaB TRUE 0.989 2.000 0.190 1.000 Y NA
 51718 51719 CPj0172 CPj0173 guaB   FALSE 0.024 535.000 0.000 NA   NA
 51720 51721 CPj0174 CPj0175     FALSE 0.072 171.000 0.000 NA   NA
 51721 51722 CPj0175 CPj0176     TRUE 0.838 8.000 0.000 NA   NA
 51723 51724 CPj0177 CPj0178     FALSE 0.029 327.000 0.000 NA   NA
 51724 51725 CPj0178 CPj0179     TRUE 0.748 1.000 0.000 NA   NA
 51725 51726 CPj0179 CPj0180     FALSE 0.413 -51.000 0.000 NA   NA
 51726 51727 CPj0180 CPj0181     FALSE 0.370 -132.000 0.000 NA   NA
 51727 51728 CPj0181 CPj0182   accC FALSE 0.091 156.000 0.000 NA   NA
 51728 51729 CPj0182 CPj0183 accC accB TRUE 0.985 -3.000 0.011 0.003 Y NA
 51729 51730 CPj0183 CPj0184 accB efp_1 TRUE 0.954 23.000 0.120 1.000 N NA
 51730 51731 CPj0184 CPj0185 efp_1 rpe TRUE 0.739 -13.000 0.007 1.000 N NA
 51732 51733 CPj0186 CPj0187     FALSE 0.073 177.000 0.000 NA N NA
 51733 51734 CPj0187 CPj0188     TRUE 0.550 63.000 0.017 1.000   NA
 51734 51735 CPj0188 CPj0189     FALSE 0.061 670.000 0.017 NA   NA
 51735 51736 CPj0189 CPj0190     TRUE 0.566 91.000 0.500 NA   NA
 51737 51738 CPj0191 CPj0192 glnQ glnP TRUE 0.985 -10.000 1.000 1.000 Y NA
 51738 51739 CPj0192 CPj0193 glnP argR TRUE 0.824 49.000 0.500 1.000 N NA
 51740 51741 CPj0194 CPj0195 gcp_2 oppA_1 TRUE 0.604 -54.000 0.006 1.000 N NA
 51741 51742 CPj0195 CPj0196 oppA_1 oppA_2 TRUE 0.676 151.000 0.000 0.027 Y NA
 51742 51743 CPj0196 CPj0197 oppA_2 oppA_3 TRUE 0.894 56.000 0.000 0.027 Y NA
 51743 51744 CPj0197 CPj0198 oppA_3 oppA_4 TRUE 0.663 284.000 0.500 0.027 Y NA
 51744 51745 CPj0198 CPj0199 oppA_4 oppB_1 FALSE 0.389 293.000 0.000 0.027 Y NA
 51745 51746 CPj0199 CPj0200 oppB_1 oppC_1 TRUE 0.988 31.000 0.273 0.027 Y NA
 51746 51747 CPj0200 CPj0201 oppC_1 oppD TRUE 0.975 -7.000 0.044 1.000 Y NA
 51747 51748 CPj0201 CPj0202 oppD oppF TRUE 0.988 -3.000 0.044 0.021 Y NA
 51748 51749 CPj0202 CPj0203 oppF   FALSE 0.025 505.000 0.000 NA   NA
 51749 51750 CPj0203 CPj0204     TRUE 0.856 12.000 0.000 NA   NA
 51750 51751 CPj0204 CPj0205     FALSE 0.127 128.000 0.000 NA   NA
 51751 51752 CPj0205 CPj0206     FALSE 0.193 79.000 0.000 NA   NA
 51752 51753 CPj0206 CPj0207   ybhI TRUE 0.794 44.000 0.217 NA   NA
 51753 51754 CPj0207 CPj0208 ybhI pfkA_2 FALSE 0.140 333.000 0.088 1.000 N NA
 51754 51755 CPj0208 CPj0209 pfkA_2   FALSE 0.025 431.000 0.000 NA   NA
 51756 51757 CPj0210 CPj0211     FALSE 0.199 76.000 0.000 NA   NA
 51757 51758 CPj0211 CPj0212     FALSE 0.125 129.000 0.000 NA   NA
 51758 51759 CPj0212 CPj0213     FALSE 0.386 48.000 0.000 NA   NA
 51759 51760 CPj0213 CPj0214     FALSE 0.088 157.000 0.000 NA   NA
 51760 51761 CPj0214 CPj0215     FALSE 0.164 99.000 0.000 NA   NA
 51761 51762 CPj0215 CPj0216     FALSE 0.091 156.000 0.000 NA   NA
 51765 51766 CPj0219 CPj0220 tgt   FALSE 0.048 221.000 0.000 NA   NA
 51766 51767 CPj0220 CPj0221     FALSE 0.025 416.000 0.000 NA   NA
 51767 51768 CPj0221 CPj0222     FALSE 0.025 437.000 0.000 NA   NA
 51768 51769 CPj0222 CPj0223     FALSE 0.152 111.000 0.000 NA   NA
 51769 51770 CPj0223 CPj0224     FALSE 0.164 99.000 0.000 NA   NA
 51770 51771 CPj0224 CPj0225     FALSE 0.057 196.000 0.000 NA   NA
 51771 51772 CPj0225 CPj0226     TRUE 0.798 22.000 0.000 NA   NA
 51773 51774 CPj0227 CPj0228 dsbB dsbG TRUE 0.976 -7.000 0.308 NA Y NA
 51776 51777 CPj0230 CPj0231   tauB TRUE 0.897 -3.000 0.111 NA   NA
 397643 397642 CPjt07 CPjt08 tRNA-Ile tRNA-Ala TRUE 0.817 5.000 0.000 NA   NA
 51778 51779 CPj0232 CPj0233     FALSE 0.132 123.000 0.000 NA   NA
 51779 51780 CPj0233 CPj0234     FALSE 0.134 121.000 0.000 NA   NA
 51781 51782 CPj0235 CPj0236 kdsB pyrG TRUE 0.762 -24.000 0.018 1.000 N NA
 51782 51783 CPj0236 CPj0237 pyrG yggF TRUE 0.783 -7.000 0.006 1.000 N NA
 51783 51784 CPj0237 CPj0238 yggF zwf FALSE 0.309 86.000 0.004 1.000 N NA
 51784 51785 CPj0238 CPj0239 zwf devB TRUE 0.510 226.000 0.021 1.000 Y NA
 51786 51787 CPj0240 CPj0241     FALSE 0.029 339.000 0.000 NA   NA
 51787 51788 CPj0241 CPj0242     FALSE 0.123 130.000 0.000 NA   NA
 51788 51789 CPj0242 CPj0243     FALSE 0.051 212.000 0.000 NA   NA
 51790 51791 CPj0244 CPj0245 adk ydhO FALSE 0.375 86.000 0.014 NA N NA
 51792 51793 CPj0246 CPj0247 rs9 rl13 TRUE 0.997 14.000 0.601 0.048 Y NA
 51793 51794 CPj0247 CPj0248 rl13 ycfV FALSE 0.072 232.000 0.000 1.000 N NA
 51794 51795 CPj0248 CPj0249 ycfV   TRUE 0.993 3.000 0.545 1.000 Y NA
 51795 51796 CPj0249 CPj0250   rl33 TRUE 0.443 58.000 0.006 1.000   NA
 51798 51799 CPj0252 CPj0253     FALSE 0.367 -138.000 0.000 NA   NA
 51799 51800 CPj0253 CPj0254     TRUE 0.961 0.000 1.000 NA   NA
 51800 51801 CPj0254 CPj0255     TRUE 0.750 64.000 1.000 NA   NA
 51801 51802 CPj0255 CPj0256     FALSE 0.045 230.000 0.000 NA   NA
 51802 51803 CPj0256 CPj0257     TRUE 0.961 0.000 1.000 NA   NA
 51803 51804 CPj0257 CPj0258     TRUE 0.969 3.000 1.000 NA   NA
 51804 51805 CPj0258 CPj0259     FALSE 0.387 -78.000 0.000 NA   NA
 51805 397641 CPj0259 CPjt09   tRNA-Tyr FALSE 0.033 286.000 0.000 NA   NA
 397641 397640 CPjt09 CPjt10 tRNA-Tyr tRNA-Thr TRUE 0.827 6.000 0.000 NA   NA
 397640 51806 CPjt10 CPj0260 tRNA-Thr secA_1 FALSE 0.238 68.000 0.000 NA   NA
 51807 51808 CPj0261 CPj0262 ydaO surE TRUE 0.616 55.000 0.015 1.000   NA
 397612 397613 CPjt11 CPjt12 tRNA-Val tRNA-Asp TRUE 0.800 4.000 0.000 NA   NA
 51810 51811 CPj0264 CPj0265 ubiD ubiA TRUE 0.979 -3.000 0.029 1.000 Y NA
 51812 51813 CPj0266 CPj0267     FALSE 0.041 243.000 0.000 NA   NA
 51813 51814 CPj0267 CPj0268     TRUE 0.798 22.000 0.000 NA   NA
 51815 51816 CPj0269 CPj0270   ywlC TRUE 0.939 15.000 0.012 NA N NA
 51818 51819 CPj0272 CPj0273 dnaX_2 tdk TRUE 0.899 -9.000 0.254 1.000 N NA
 51819 51820 CPj0273 CPj0274 tdk gyrA_1 TRUE 0.918 5.000 0.007 1.000 N NA
 51820 51821 CPj0274 CPj0275 gyrA_1 gyrB_1 TRUE 0.997 16.000 0.306 0.005 Y NA
 51821 51822 CPj0275 CPj0276 gyrB_1   TRUE 0.925 4.000 0.028 NA   NA
 51822 51823 CPj0276 CPj0277     FALSE 0.036 264.000 0.000 NA   NA
 51823 51824 CPj0277 CPj0278     FALSE 0.103 147.000 0.000 NA   NA
 51824 51825 CPj0278 CPj0279     TRUE 0.986 -3.000 0.667 NA Y NA
 51825 51826 CPj0279 CPj0280   dppF_1 TRUE 0.993 10.000 0.089 1.000 Y NA
 51827 51828 CPj0281 CPj0282 dhnA xasA TRUE 0.981 20.000 1.000 1.000 N NA
 51829 51830 CPj0283 CPj0284     FALSE 0.059 189.000 0.000 NA   NA
 51830 51831 CPj0284 CPj0285     TRUE 0.779 3.000 0.000 NA   NA
 51831 51832 CPj0285 CPj0286   mgtE TRUE 0.629 52.000 0.033 NA   NA
 51832 51833 CPj0286 CPj0287 mgtE   TRUE 0.921 27.000 0.044 1.000   NA
 51833 51834 CPj0287 CPj0288     FALSE 0.028 347.000 0.000 NA   NA
 51835 51836 CPj0289 CPj0290 aaaT   TRUE 0.848 43.000 0.273 1.000   NA
 51836 51837 CPj0290 CPj0291   incB FALSE 0.380 141.000 0.273 NA   NA
 51837 51838 CPj0291 CPj0292 incB incC TRUE 0.938 31.000 1.000 NA   NA
 51838 51839 CPj0292 CPj0293 incC   TRUE 0.563 110.000 0.667 NA   NA
 51839 51840 CPj0293 CPj0294     FALSE 0.109 366.000 0.182 NA   NA
 51841 51842 CPj0295 CPj0296 acpP fabG TRUE 0.715 156.000 0.007 0.012 Y NA
 51842 51843 CPj0296 CPj0297 fabG fabD TRUE 0.994 6.000 0.019 0.012 Y NA
 51843 51844 CPj0297 CPj0298 fabD fabH TRUE 0.993 17.000 0.009 0.012 Y NA
 51845 51846 CPj0299 CPj0300 recR yaeT FALSE 0.053 365.000 0.003 1.000 N NA
 51846 51847 CPj0300 CPj0301 yaeT   TRUE 0.854 95.000 0.175 1.000 Y NA
 51847 51848 CPj0301 CPj0302   lpxD TRUE 0.988 22.000 0.018 1.000 Y NA
 51850 51851 CPj0304 CPj0305 pdhA pdhB TRUE 0.990 -7.000 0.456 0.002 Y NA
 51851 51852 CPj0305 CPj0306 pdhB pdhC TRUE 0.993 5.000 0.254 1.000 Y NA
 51855 51856 CPj0309 CPj0310 dnaA_1 60IM TRUE 0.722 72.000 0.714 1.000 N NA
 51856 51857 CPj0310 CPj0311 60IM lgt FALSE 0.238 139.000 0.006 1.000 N NA
 51858 51859 CPj0312 CPj0313   acpS TRUE 0.952 11.000 0.036 NA   NA
 51861 51862 CPj0315 CPj0316 rs1 nusA FALSE 0.423 101.000 0.006 0.043 N NA
 51862 51863 CPj0316 CPj0317 nusA infB TRUE 0.840 -43.000 0.342 1.000 N NA
 51863 51864 CPj0317 CPj0318 infB rbfA TRUE 0.996 14.000 0.530 1.000 Y NA
 51864 51865 CPj0318 CPj0319 rbfA truB TRUE 0.953 46.000 0.111 1.000 Y NA
 51865 51866 CPj0319 CPj0320 truB ribF TRUE 0.855 -22.000 0.308 1.000 N NA
 51868 51869 CPj0322 CPj0323 yscU lcrD TRUE 0.992 0.000 0.219 0.013 Y NA
 51869 51870 CPj0323 CPj0324 lcrD lcrE TRUE 0.920 29.000 0.188 1.000   NA
 51870 51871 CPj0324 CPj0325 lcrE sycE TRUE 0.983 17.000 0.240 0.009   NA
 51871 51872 CPj0325 CPj0326 sycE malQ TRUE 0.945 -3.000 0.600 1.000   NA
 51872 51873 CPj0326 CPj0327 malQ rl28 FALSE 0.099 217.000 0.005 1.000 N NA
 51873 51874 CPj0327 CPj0328 rl28   TRUE 0.781 27.000 0.005 NA N NA
 51874 51875 CPj0328 CPj0329     TRUE 0.432 93.000 0.038 NA N NA
 51876 51877 CPj0330 CPj0331     TRUE 0.970 23.000 1.000 NA   NA
 51877 51878 CPj0331 CPj0332     FALSE 0.167 96.000 0.000 NA   NA
 51878 51879 CPj0332 CPj0333     FALSE 0.110 142.000 0.000 NA   NA
 51880 51881 CPj0334 CPj0335   folD TRUE 0.709 -9.000 0.007 NA   NA
 51881 51882 CPj0335 CPj0336 folD yojL TRUE 0.947 -27.000 0.025 1.000 Y NA
 51884 51885 CPj0338 CPj0339 dnaN   TRUE 0.886 36.000 0.318 1.000   NA
 51885 51886 CPj0339 CPj0340     TRUE 0.689 -183.000 0.000 0.004   NA
 51886 51887 CPj0340 CPj0342     FALSE 0.191 124.000 0.006 NA   NA
 51888 51889 CPj0343 CPj0344 yaeL yaeM TRUE 0.980 13.000 0.568 1.000   NA
 51889 51890 CPj0344 CPj0345 yaeM ytgD FALSE 0.293 129.000 0.008 1.000 N NA
 51890 51891 CPj0345 CPj0346 ytgD ytgC TRUE 0.994 0.000 0.443 0.006 Y NA
 51891 51892 CPj0346 CPj0347 ytgC ytgB_1 TRUE 0.992 3.000 0.432 1.000 Y NA
 51892 51893 CPj0347 CPj0348 ytgB_1 ytgA TRUE 0.980 -16.000 0.898 1.000 Y NA
 51894 51895 CPj0350 CPj0351   adt_1 FALSE 0.054 201.000 0.000 NA   NA
 51895 51896 CPj0351 CPj0352 adt_1   FALSE 0.114 139.000 0.000 NA   NA
 51896 51897 CPj0352 CPj0353     FALSE 0.277 60.000 0.000 NA   NA
 51897 51898 CPj0353 CPj0354     TRUE 0.668 29.000 0.000 NA   NA
 51899 51900 CPj0355 CPj0356     FALSE 0.049 218.000 0.000 NA   NA
 51900 51901 CPj0356 CPj0357     TRUE 0.834 7.000 0.000 NA   NA
 51901 51902 CPj0357 CPj0358     FALSE 0.038 258.000 0.000 NA   NA
 51904 51905 CPj0360 CPj0361 gnd tyrS TRUE 0.939 21.000 0.014 1.000 N NA
 51905 51906 CPj0361 CPj0362 tyrS rpsD FALSE 0.070 405.000 0.008 1.000 N NA
 51906 51907 CPj0362 CPj0363 rpsD flhA FALSE 0.418 115.000 0.025 1.000 N NA
 51907 397614 CPj0363 CPjt13 flhA tRNA-Pro FALSE 0.085 160.000 0.000 NA   NA
 51908 51909 CPj0364 CPj0365 fer4   FALSE 0.033 287.000 0.000 NA   NA
 51909 51910 CPj0365 CPj0366     FALSE 0.025 429.000 0.000 NA   NA
 51910 51911 CPj0366 CPj0367     FALSE 0.024 659.000 0.000 NA   NA
 51911 51912 CPj0367 CPj0368     FALSE 0.417 -49.000 0.000 NA   NA
 51912 51913 CPj0368 CPj0369     FALSE 0.041 241.000 0.000 NA   NA
 51913 51914 CPj0369 CPj0370     FALSE 0.043 235.000 0.000 NA   NA
 51914 51915 CPj0370 CPj0371     FALSE 0.044 232.000 0.000 NA   NA
 51915 51916 CPj0371 CPj0372     FALSE 0.063 181.000 0.000 NA   NA
 51916 51917 CPj0372 CPj0373   gcpE FALSE 0.026 376.000 0.000 NA   NA
 51917 51918 CPj0373 CPj0374 gcpE   TRUE 0.813 -3.000 0.009 NA   NA
 51918 51919 CPj0374 CPj0375     FALSE 0.088 157.000 0.000 NA   NA
 51919 51920 CPj0375 CPj0376     FALSE 0.043 236.000 0.000 NA   NA
 51921 51922 CPj0377 CPj0378 sucB_1 sucA TRUE 0.994 4.000 0.667 1.000 Y NA
 51923 51924 CPj0379 CPj0380   hemN_1 TRUE 0.718 -10.000 0.008 NA   NA
 51925 51926 CPj0381 CPj0382   yabC_1 FALSE 0.071 224.000 0.000 1.000   NA
 51926 51927 CPj0382 CPj0383 yabC_1   TRUE 0.838 -3.000 0.007 1.000   NA
 51927 51928 CPj0383 CPj0384   hctB FALSE 0.240 166.000 0.006 0.047   NA
 51928 51929 CPj0384 CPj0385 hctB pepA FALSE 0.304 142.000 0.017 1.000   NA
 51929 51930 CPj0385 CPj0386 pepA ssb TRUE 0.916 25.000 0.013 1.000 N NA
 51930 51931 CPj0386 CPj0387 ssb   FALSE 0.109 171.000 0.000 1.000   NA
 51933 51934 CPj0389 CPj0390   ruvB TRUE 0.837 -3.000 0.007 1.000   NA
 51934 51935 CPj0390 CPj0391 ruvB   FALSE 0.027 363.000 0.000 NA   NA
 51936 51937 CPj0392 CPj0393 dcd   TRUE 0.816 -7.000 0.021 NA   NA
 51937 51938 CPj0393 CPj0394   tlyC_1 TRUE 0.968 10.000 0.364 NA   NA
 51938 51939 CPj0394 CPj0395 tlyC_1   TRUE 0.907 -7.000 0.545 NA   NA
 51940 51941 CPj0396 CPj0397 yhfO   TRUE 0.937 25.000 0.041 1.000 N NA
 51942 51943 CPj0398 CPj0399     FALSE 0.067 176.000 0.000 NA   NA
 51943 51944 CPj0399 CPj0400     TRUE 0.971 10.000 0.500 NA   NA
 51945 51946 CPj0401 CPj0402   mutY TRUE 0.794 1.000 0.005 NA   NA
 51948 51949 CPj0404 CPj0405     FALSE 0.199 76.000 0.000 NA   NA
 51952 51953 CPj0408 CPj0409     TRUE 0.466 61.000 0.012 NA   NA
 51953 51954 CPj0409 CPj0410   dnaQ_1 TRUE 0.852 -7.000 0.050 NA   NA
 51954 51955 CPj0410 CPj0411 dnaQ_1   TRUE 0.870 -3.000 0.031 NA   NA
 51955 51956 CPj0411 CPj0412     TRUE 0.466 -22.000 0.000 NA   NA
 51957 51958 CPj0413 CPj0414 msbA accA TRUE 0.706 -34.000 0.010 1.000 N NA
 51958 51959 CPj0414 CPj0415 accA   FALSE 0.337 75.000 0.008 NA   NA
 51959 51960 CPj0415 CPj0416   himD TRUE 0.655 56.000 0.182 NA   NA
 51961 51962 CPj0417 CPj0418 amiA murE TRUE 0.925 -85.000 0.014 1.000 Y NA
 51962 51963 CPj0418 CPj0419 murE pbp3 FALSE 0.353 473.000 0.022 1.000 Y NA
 51963 51964 CPj0419 CPj0420 pbp3   TRUE 0.829 -13.000 0.135 NA   NA
 51964 51965 CPj0420 CPj0421   yabC_2 TRUE 0.783 -3.000 0.007 NA   NA
 51966 51967 CPj0422 CPj0423     TRUE 0.952 4.000 0.286 NA   NA
 51967 51968 CPj0423 CPj0424   dnaA_2 FALSE 0.040 393.000 0.000 1.000   NA
 51968 51969 CPj0424 CPj0425 dnaA_2   TRUE 0.903 16.000 0.006 NA N NA
 51971 51972 CPj0427 CPj0428 nqr2 nqr3 TRUE 0.995 4.000 0.093 0.002 Y NA
 51972 51973 CPj0428 CPj0429 nqr3 nqr4 TRUE 0.988 -3.000 0.034 0.007 Y NA
 51973 51974 CPj0429 CPj0430 nqr4 nqr5 TRUE 0.994 4.000 0.034 0.007 Y NA
 51975 51976 CPj0431 CPj0432     TRUE 0.688 28.000 0.000 NA   NA
 51976 51977 CPj0432 CPj0433   gcsH TRUE 0.543 110.000 0.571 NA   NA
 51977 51978 CPj0433 CPj0434 gcsH   TRUE 0.958 0.000 0.857 NA   NA
 51978 51979 CPj0434 CPj0435     TRUE 0.947 10.000 0.032 NA   NA
 51979 51980 CPj0435 CPj0436   lplA_1 TRUE 0.942 -3.000 0.032 0.024 N NA
 51983 51984 CPj0439 CPj0440     TRUE 0.956 25.000 0.667 NA   NA
 51984 51985 CPj0440 CPj0441     FALSE 0.102 148.000 0.000 NA   NA
 51985 51986 CPj0441 CPj0442     FALSE 0.331 172.000 0.571 NA   NA
 51986 51987 CPj0442 CPj0443     FALSE 0.293 198.000 0.667 NA   NA
 51987 51988 CPj0443 CPj0444   pmp_6 FALSE 0.031 305.000 0.000 NA   NA
 51988 51989 CPj0444 CPj0445 pmp_6 pmp_7 FALSE 0.109 262.000 0.000 0.030   NA
 51989 51990 CPj0445 CPj0446 pmp_7 pmp_8 TRUE 0.729 44.000 0.000 0.030   NA
 51990 51991 CPj0446 CPj0447 pmp_8 pmp_9 FALSE 0.262 150.000 0.000 0.030   NA
 51992 51993 CPj0448 CPj0449 yxjG_2 pmp_10 FALSE 0.038 517.000 0.000 1.000   NA
 51994 51995 CPj0450 CPj0451 pmp_11 pmp_12 FALSE 0.113 258.000 0.000 0.030   NA
 51995 51996 CPj0451 CPj0452 pmp_12 pmp_13 FALSE 0.081 371.000 0.000 0.030   NA
 51996 51997 CPj0452 CPj0453 pmp_13 pmp_14 TRUE 0.977 27.000 1.000 0.030   NA
 51998 51999 CPj0456 CPj0457     FALSE 0.025 444.000 0.000 NA   NA
 51999 52000 CPj0457 CPj0458     FALSE 0.027 368.000 0.000 NA   NA
 52000 52001 CPj0458 CPj0459     FALSE 0.031 296.000 0.000 NA   NA
 52001 52002 CPj0459 CPj0460     TRUE 0.505 -16.000 0.000 NA   NA
 52002 52003 CPj0460 CPj0461     TRUE 0.748 1.000 0.000 NA   NA
 52003 52004 CPj0461 CPj0462     FALSE 0.026 396.000 0.000 NA   NA
 52004 52005 CPj0462 CPj0463     FALSE 0.119 136.000 0.000 NA   NA
 52005 52006 CPj0463 CPj0464     TRUE 0.827 6.000 0.000 NA   NA
 52006 52007 CPj0464 CPj0465     TRUE 0.736 26.000 0.000 NA   NA
 52008 52009 CPj0466 CPj0467 pmp_15 pmp_16 FALSE 0.401 93.000 0.000 0.030   NA
 52009 52010 CPj0467 CPj0468 pmp_16 pmp_17.1 FALSE 0.057 195.000 0.000 NA   NA
 52010 52011 CPj0468 CPj0469 pmp_17.1 pmp_17.2 TRUE 0.514 -15.000 0.000 NA   NA
 52011 52012 CPj0469 CPj0470 pmp_17.2 pmp_17.3 TRUE 0.665 -106.000 0.000 0.029   NA
 52012 52013 CPj0470 CPj0471 pmp_17.3 pmp_18 TRUE 0.870 29.000 0.000 0.029   NA
 52014 52015 CPj0472 CPj0473     FALSE 0.082 162.000 0.000 NA   NA
 52015 52016 CPj0473 CPj0474     FALSE 0.052 211.000 0.000 NA   NA
 52016 52017 CPj0474 CPj0475   glgB TRUE 0.500 109.000 0.364 NA   NA
 52017 52018 CPj0475 CPj0476 glgB   TRUE 0.975 11.000 0.636 NA   NA
 52018 52019 CPj0476 CPj0477   yqeV TRUE 0.818 -3.000 0.010 NA   NA
 52019 52020 CPj0477 CPj0478 yqeV hflX FALSE 0.272 101.000 0.005 1.000   NA
 52020 52021 CPj0478 CPj0479 hflX phnP TRUE 0.761 -12.000 0.008 1.000   NA
 52021 52022 CPj0479 CPj0480 phnP   FALSE 0.085 222.000 0.008 NA   NA
 52022 52023 CPj0480 CPj0481     TRUE 0.599 33.000 0.000 NA   NA
 52023 52024 CPj0481 CPj0482   artJ TRUE 0.856 12.000 0.000 NA   NA
 52025 52026 CPj0483 CPj0484   aroG TRUE 0.959 3.000 0.333 1.000   NA
 52026 52027 CPj0484 CPj0485 aroG   FALSE 0.052 211.000 0.000 NA   NA
 52028 52029 CPj0486 CPj0487     FALSE 0.049 325.000 0.000 1.000 N NA
 52029 52030 CPj0487 CPj0488   ycfF TRUE 0.877 24.000 0.005 1.000 N NA
 52030 52031 CPj0488 CPj0489 ycfF   TRUE 0.829 -3.000 0.011 NA   NA
 52035 52036 CPj0493 CPj0494     FALSE 0.114 139.000 0.000 NA   NA
 52037 52038 CPj0495 CPj0496 aspC   TRUE 0.877 -3.000 0.037 NA   NA
 52039 52040 CPj0497 CPj0498     TRUE 0.765 -7.000 0.010 NA   NA
 52040 52041 CPj0498 CPj0499     FALSE 0.363 168.000 0.667 NA   NA
 52042 52043 CPj0500 CPj0501 proS hrcA FALSE 0.357 92.000 0.007 1.000 N NA
 52043 52044 CPj0501 CPj0502 hrcA grpE TRUE 0.932 -3.000 0.286 1.000 N NA
 52044 52045 CPj0502 CPj0503 grpE dnaK TRUE 0.989 30.000 0.224 0.012 Y NA
 52045 52046 CPj0503 CPj0504 dnaK vacB FALSE 0.067 271.000 0.003 1.000 N NA
 52046 52047 CPj0504 CPj0505 vacB   TRUE 0.873 2.000 0.005 1.000 N NA
 52047 52048 CPj0505 CPj0506     TRUE 0.436 63.000 0.011 NA   NA
 52048 52049 CPj0506 CPj0507     FALSE 0.329 118.000 0.024 NA   NA
 52049 52050 CPj0507 CPj0508     TRUE 0.974 17.000 0.667 NA   NA
 52050 52051 CPj0508 CPj0509     TRUE 0.705 32.000 0.006 NA   NA
 52051 52052 CPj0509 CPj0510   tlyC_2 TRUE 0.937 2.000 0.222 NA   NA
 52052 52053 CPj0510 CPj0511 tlyC_2 rsbV_1 FALSE 0.166 165.000 0.011 NA   NA
 52053 52054 CPj0511 CPj0512 rsbV_1   TRUE 0.699 62.000 0.571 NA   NA
 52054 52055 CPj0512 CPj0513     FALSE 0.093 232.000 0.011 NA   NA
 52055 52056 CPj0513 CPj0514     TRUE 0.788 -27.000 0.205 NA   NA
 52056 52057 CPj0514 CPj0515   ubiE TRUE 0.563 -52.000 0.008 NA   NA
 52058 52059 CPj0516 CPj0517     TRUE 0.466 -22.000 0.000 NA   NA
 52059 52060 CPj0517 CPj0518     FALSE 0.055 198.000 0.000 NA   NA
 52060 52061 CPj0518 CPj0519   dapF FALSE 0.267 98.000 0.008 NA   NA
 52061 52062 CPj0519 CPj0520 dapF clpP_1 TRUE 0.630 -31.000 0.006 1.000 N NA
 52062 52063 CPj0520 CPj0521 clpP_1 glyA TRUE 0.959 20.000 0.051 1.000 N NA
 52064 52065 CPj0522 CPj0523     TRUE 0.616 65.000 0.273 NA   NA
 52065 52066 CPj0523 CPj0524     TRUE 0.827 48.000 0.750 NA   NA
 52066 52067 CPj0524 CPj0525     FALSE 0.028 340.000 0.000 NA   NA
 52068 52069 CPj0526 CPj0527 kpsF sucB_2 TRUE 0.964 27.000 0.857 1.000 N NA
 52069 52070 CPj0527 CPj0528 sucB_2 gltT TRUE 0.996 14.000 0.714 1.000 Y NA
 52070 52071 CPj0528 CPj0529 gltT ycaH TRUE 0.906 0.000 0.013 1.000 N NA
 52071 52072 CPj0529 CPj0530 ycaH spoU_1 FALSE 0.112 198.000 0.006 1.000 N NA
 52072 52073 CPj0530 CPj0531 spoU_1   TRUE 0.876 -12.000 0.213 1.000   NA
 52073 52074 CPj0531 CPj0532   ribC TRUE 0.890 3.000 0.006 1.000   NA
 52075 52076 CPj0533 CPj0534   dksA TRUE 0.872 25.000 0.009 NA N NA
 52076 52077 CPj0534 CPj0535 dksA lspA TRUE 0.958 6.000 0.038 1.000 N NA
 52077 52078 CPj0535 CPj0536 lspA dagA_1 TRUE 0.840 46.000 0.038 0.055 N NA
 52078 52079 CPj0536 CPj0537 dagA_1   FALSE 0.404 139.000 0.333 NA   NA
 52079 52080 CPj0537 CPj0538     TRUE 0.976 20.000 1.000 NA   NA
 52080 52081 CPj0538 CPj0539   pmp_19 FALSE 0.058 191.000 0.000 NA   NA
 52081 52082 CPj0539 CPj0540 pmp_19 pmp_20 TRUE 0.574 146.000 0.400 0.028   NA
 52082 2132977 CPj0540 CPjt15 pmp_20 tRNA-Ser TRUE 0.507 39.000 0.000 NA   NA
 2132977 52083 CPjt15 CPj0541 tRNA-Ser   FALSE 0.061 183.000 0.000 NA   NA
 52083 52084 CPj0541 CPj0542     TRUE 0.987 -3.000 0.509 1.000 Y NA
 52084 52085 CPj0542 CPj0543     TRUE 0.977 -15.000 0.616 1.000 Y NA
 52086 52087 CPj0544 CPj0545 yhbZ rl27 TRUE 0.565 101.000 0.335 1.000   NA
 52087 52088 CPj0545 CPj0546 rl27 rl21 TRUE 0.995 25.000 0.667 0.041 Y NA
 397638 52089 CPjt16 CPj0547 tRNA-Phe ygbB FALSE 0.050 216.000 0.000 NA   NA
 52090 52091 CPj0548 CPj0549 cysJ rs10 TRUE 0.905 21.000 0.006 1.000 N NA
 52091 52092 CPj0549 CPj0550 rs10 fusA TRUE 0.988 8.000 0.007 1.000 Y NA
 52092 52093 CPj0550 CPj0551 fusA rs7 TRUE 0.989 8.000 0.008 1.000 Y NA
 52093 52094 CPj0551 CPj0552 rs7 rs12 TRUE 0.959 48.000 0.029 0.009 Y NA
 52094 52095 CPj0552 CPj0553 rs12   FALSE 0.047 222.000 0.000 NA   NA
 52096 52097 CPj0554 CPj0555   tsp FALSE 0.239 154.000 0.025 NA   NA
 52098 52099 CPj0556 CPj0557 crpA omcB FALSE 0.168 279.000 0.200 1.000   NA
 52099 52100 CPj0557 CPj0558 omcB omcA TRUE 0.566 167.000 0.600 0.002   NA
 52102 52103 CPj0560 CPj0561 gltX euo FALSE 0.060 256.000 0.000 1.000   NA
 52103 52104 CPj0561 CPj0562 euo   FALSE 0.024 511.000 0.000 NA   NA
 52104 52105 CPj0562 CPj0563   recJ FALSE 0.039 254.000 0.000 NA   NA
 52105 52106 CPj0563 CPj0564 recJ secD_secF FALSE 0.356 86.000 0.007 1.000   NA
 52106 52107 CPj0564 CPj0565 secD_secF   FALSE 0.063 180.000 0.000 NA   NA
 52108 52109 CPj0566 CPj0567 yaeS cdsA TRUE 0.990 1.000 0.400 1.000 Y NA
 52109 52110 CPj0567 CPj0568 cdsA cmk TRUE 0.855 -3.000 0.008 1.000 N NA
 52110 52111 CPj0568 CPj0569 cmk plsC TRUE 0.855 -3.000 0.008 1.000 N NA
 52111 52112 CPj0569 CPj0570 plsC argS TRUE 0.909 5.000 0.006 1.000 N NA
 52115 52116 CPj0573 CPj0574 yebC   TRUE 0.590 -13.000 0.003 NA   NA
 52116 52117 CPj0574 CPj0575   yhhY TRUE 0.889 34.000 0.200 1.000   NA
 52117 52118 CPj0575 CPj0576A yhhY   TRUE 0.969 -3.000 0.006 1.000 Y NA
 52119 52120 CPj0576B CPj0577     FALSE 0.037 260.000 0.000 NA   NA
 52120 52121 CPj0577 CPj0578   yaeI FALSE 0.212 248.000 0.316 1.000   NA
 52121 52122 CPj0578 CPj0579 yaeI yacM TRUE 0.820 -7.000 0.010 1.000   NA
 52122 52123 CPj0579 CPj0580 yacM truA TRUE 0.845 -3.000 0.007 1.000 N NA
 52125 397616 CPj0582 CPjt17   tRNA-Leu FALSE 0.300 56.000 0.000 NA   NA
 397616 52126 CPjt17 CPj0583 tRNA-Leu   FALSE 0.188 82.000 0.000 NA   NA
 52126 52127 CPj0583 CPj0584   atoS TRUE 0.813 -13.000 0.057 NA   NA
 52130 52131 CPj0587 CPj0588 yvyD   FALSE 0.426 -43.000 0.000 NA   NA
 52131 52132 CPj0588 CPj0589     TRUE 0.905 11.000 0.007 NA   NA
 2132978 52134 CPjt19 CPj0591 tRNA-Leu yagE FALSE 0.145 116.000 0.000 NA   NA
 52134 52135 CPj0591 CPj0592 yagE yidD FALSE 0.198 130.000 0.007 NA   NA
 52137 52138 CPj0594 CPj0595 pheT   TRUE 0.765 -3.000 0.006 NA   NA
 52138 52139 CPj0595 CPj0596   ada TRUE 0.950 10.000 0.038 NA   NA
 52140 52141 CPj0597 CPj0598 oppC_2 oppB_2 TRUE 0.994 1.000 0.400 0.021 Y NA
 52141 52142 CPj0598 CPj0599 oppB_2 oppA_5 TRUE 0.981 -18.000 0.318 0.021 Y NA
 52142 52143 CPj0599 CPj0600 oppA_5   TRUE 0.798 22.000 0.000 NA   NA
 52143 52144 CPj0600 CPj0601     FALSE 0.024 586.000 0.000 NA   NA
 52144 52145 CPj0601 CPj0602     FALSE 0.386 48.000 0.000 NA   NA
 52147 52148 CPj0604 CPj0605 fliY yhhF FALSE 0.106 202.000 0.005 1.000 N NA
 52148 52149 CPj0605 CPj0606 yhhF   TRUE 0.843 -3.000 0.008 1.000   NA
 52149 52150 CPj0606 CPj0607   glgC TRUE 0.432 126.000 0.070 1.000   NA
 52150 52151 CPj0607 CPj0608 glgC   FALSE 0.363 118.000 0.012 1.000 N NA
 52153 52154 CPj0610 CPj0611 rho yacE TRUE 0.879 -3.000 0.013 1.000 N NA
 52154 52155 CPj0611 CPj0612 yacE polA TRUE 0.898 -6.000 0.068 1.000 N NA
 52155 52156 CPj0612 CPj0613 polA sohB TRUE 0.885 24.000 0.006 1.000 N NA
 52156 52157 CPj0613 CPj0614 sohB adt_2 FALSE 0.329 124.000 0.011 1.000 N NA
 52157 52158 CPj0614 CPj0615 adt_2 pgsA_1 FALSE 0.128 229.000 0.000 0.047 N NA
 2132979 52159 CPjt20 CPj0616 tRNA-Ser dnaB FALSE 0.028 351.000 0.000 NA   NA
 52159 52160 CPj0616 CPj0617 dnaB gidA FALSE 0.047 344.000 0.000 1.000 N NA
 52160 52161 CPj0617 CPj0618 gidA lplA_2 TRUE 0.754 -13.000 0.008 1.000 N NA
 52162 52163 CPj0619 CPj0620 ndk ruvA FALSE 0.383 72.000 0.006 1.000 N NA
 52163 52164 CPj0620 CPj0621 ruvA ruvC TRUE 0.995 2.000 0.451 0.013 Y NA
 52164 52165 CPj0621 CPj0622 ruvC   FALSE 0.108 143.000 0.000 NA   NA
 52166 52167 CPj0623 CPj0624   gapA TRUE 0.961 15.000 0.128 NA   NA
 52167 52168 CPj0624 CPj0625 gapA rl17 TRUE 0.673 42.000 0.006 1.000 N NA
 52168 52169 CPj0625 CPj0626 rl17 rpoA TRUE 0.982 7.000 0.873 1.000 N NA
 52169 52170 CPj0626 CPj0627 rpoA rs11 TRUE 0.967 21.000 0.308 1.000 N NA
 52170 52171 CPj0627 CPj0628 rs11 rs13 TRUE 0.996 22.000 0.810 0.040 Y NA
 52171 52172 CPj0628 CPj0629 rs13 secY TRUE 0.590 56.000 0.011 1.000 N NA
 52172 52173 CPj0629 CPj0630 secY rl15 TRUE 0.967 25.000 0.730 1.000 N NA
 52173 52174 CPj0630 CPj0631 rl15 rs5 TRUE 0.984 -7.000 0.148 0.055 Y NA
 52174 52175 CPj0631 CPj0632 rs5 rl18 TRUE 0.997 18.000 0.814 0.055 Y NA
 52175 52176 CPj0632 CPj0633 rl18 rl6 TRUE 0.997 11.000 0.815 0.040 Y NA
 52176 52177 CPj0633 CPj0634 rl6 rs8 TRUE 0.994 27.000 0.808 0.040 Y NA
 52177 52178 CPj0634 CPj0635 rs8 rl5 TRUE 0.995 18.000 0.059 0.040 Y NA
 52178 52179 CPj0635 CPj0636 rl5 rl24 TRUE 0.995 2.000 0.758 0.040 Y NA
 52179 52180 CPj0636 CPj0637 rl24 rl14 TRUE 0.997 14.000 0.810 0.055 Y NA
 52180 52181 CPj0637 CPj0638 rl14 rs17 TRUE 0.996 23.000 0.791 0.055 Y NA
 52181 52182 CPj0638 CPj0639 rs17 rl29 TRUE 0.990 -7.000 0.828 0.040 Y NA
 52182 52183 CPj0639 CPj0640 rl29 rl16 TRUE 0.996 3.000 0.802 0.040 Y NA
 52183 52184 CPj0640 CPj0641 rl16 rs3 TRUE 0.992 29.000 0.828 0.055 Y NA
 52184 52185 CPj0641 CPj0642 rs3 rl22 TRUE 0.997 16.000 0.719 0.055 Y NA
 52185 52186 CPj0642 CPj0643 rl22 rs19 TRUE 0.997 19.000 0.769 0.055 Y NA
 52186 52187 CPj0643 CPj0644 rs19 rl2 TRUE 0.997 6.000 0.820 0.055 Y NA
 52187 52188 CPj0644 CPj0645 rl2 rl23 TRUE 0.996 22.000 0.849 0.037 Y NA
 52188 52189 CPj0645 CPj0646 rl23 rl4 TRUE 0.993 17.000 0.013 0.040 Y NA
 52189 52190 CPj0646 CPj0647 rl4 rplC TRUE 0.979 33.000 0.020 0.040 Y NA
 52190 52191 CPj0647 CPj0648 rplC   FALSE 0.032 289.000 0.000 NA   NA
 52191 52192 CPj0648 CPj0649   fmt FALSE 0.212 104.000 0.006 NA   NA
 52192 52193 CPj0649 CPj0650 fmt lpxA TRUE 0.764 -10.000 0.007 1.000 N NA
 52193 52194 CPj0650 CPj0651 lpxA fabZ TRUE 0.968 13.000 0.048 1.000 N NA
 52194 52195 CPj0651 CPj0652 fabZ lpxC TRUE 0.953 12.000 0.012 1.000 N NA
 52195 52196 CPj0652 CPj0653 lpxC cutE TRUE 0.972 30.000 0.012 1.000 Y NA
 52196 52197 CPj0653 CPj0654 cutE yciA TRUE 0.959 10.000 0.072 NA N NA
 52197 52198 CPj0654 CPj0655 yciA dnaQ_2 FALSE 0.367 131.000 0.072 NA N NA
 52200 52201 CPj0657 CPj0658 yjeE   TRUE 0.663 -21.000 0.010 NA   NA
 397618 52202 CPjt22 CPj0659 tRNA-Leu trxA FALSE 0.408 47.000 0.000 NA   NA
 52203 52204 CPj0660 CPj0661 spoU_2 mip TRUE 0.875 -3.000 0.011 1.000 N NA
 52204 52205 CPj0661 CPj0662 mip aspS FALSE 0.403 69.000 0.006 1.000 N NA
 52205 52206 CPj0662 CPj0663 aspS hisS TRUE 0.954 -25.000 0.009 0.053 Y NA
 52206 52207 CPj0663 CPj0664 hisS   FALSE 0.027 364.000 0.000 NA   NA
 52208 52209 CPj0665 CPj0666 uhpC dnaE TRUE 0.920 20.000 0.007 1.000 N NA
 52211 52212 CPj0668 CPj0669     TRUE 0.979 14.000 0.750 NA   NA
 52212 52213 CPj0669 CPj0670   rsbW TRUE 0.906 -13.000 0.875 NA   NA
 52215 52216 CPj0672 CPj0673 dacF   FALSE 0.206 236.000 0.455 NA   NA
 52217 52218 CPj0674 CPj0675 fmu   FALSE 0.324 97.000 0.012 NA   NA
 52218 52219 CPj0675 CPj0676     TRUE 0.561 129.000 1.000 NA   NA
 52219 52220 CPj0676 CPj0677     TRUE 0.879 36.000 0.500 NA   NA
 52220 52221 CPj0677 CPj0678     FALSE 0.034 278.000 0.000 NA   NA
 52221 52222 CPj0678 CPj0679   pgk FALSE 0.026 402.000 0.000 NA   NA
 52222 52223 CPj0679 CPj0680 pgk ygo4 TRUE 0.676 38.000 0.005 1.000   NA
 52223 52224 CPj0680 CPj0681 ygo4   TRUE 0.978 7.000 0.937 NA   NA
 52225 52226 CPj0682 CPj0683 dppD dppF_2 TRUE 0.986 -10.000 0.250 0.002 Y NA
 52230 52231 CPj0687 CPj0688     FALSE 0.387 165.000 0.714 NA   NA
 52232 52233 CPj0689 CPj0690 yfhO_1   TRUE 0.924 29.000 0.193 1.000 N NA
 52233 52234 CPj0690 CPj0691   abcX TRUE 0.991 2.000 0.482 1.000 Y NA
 52234 52235 CPj0691 CPj0692 abcX   TRUE 0.994 6.000 0.466 1.000 Y NA
 52235 52236 CPj0692 CPj0693     FALSE 0.046 325.000 0.000 1.000   NA
 52236 52237 CPj0693 CPj0694   pbp2 TRUE 0.669 71.000 0.400 1.000   NA
 52239 52240 CPj0696 CPj0697 rs2 tsf TRUE 0.992 0.000 0.748 1.000 Y NA
 52240 52241 CPj0697 CPj0698 tsf pyrH TRUE 0.975 8.000 0.416 1.000 N NA
 52241 52242 CPj0698 CPj0699 pyrH rrf TRUE 0.885 -22.000 0.626 1.000 N NA
 397620 397621 CPjt24 CPjt25 tRNA-Glu tRNA-Lys TRUE 0.736 26.000 0.000 NA   NA
 52243 52244 CPj0700 CPj0701   karG TRUE 0.919 -13.000 0.848 1.000   NA
 397634 52245 CPjt26 CPj0702 tRNA-Thr yscC FALSE 0.105 146.000 0.000 NA   NA
 52245 52246 CPj0702 CPj0703 yscC   TRUE 0.928 -3.000 0.208 1.000 N NA
 52246 52247 CPj0703 CPj0704   fliN TRUE 0.980 16.000 0.583 1.000 N NA
 52247 52248 CPj0704 CPj0705 fliN   TRUE 0.973 10.000 0.600 NA   NA
 52248 52249 CPj0705 CPj0706     TRUE 0.968 4.000 0.750 NA   NA
 52249 52250 CPj0706 CPj0707   yscN TRUE 0.977 18.000 0.875 NA   NA
 52250 52251 CPj0707 CPj0708 yscN   TRUE 0.964 2.000 0.857 NA   NA
 52251 52252 CPj0708 CPj0709     TRUE 0.580 34.000 0.000 NA   NA
 52252 52253 CPj0709 CPj0710     TRUE 0.826 19.000 0.000 NA   NA
 52253 52254 CPj0710 CPj0711     TRUE 0.970 22.000 0.857 NA   NA
 52254 52255 CPj0711 CPj0712     TRUE 0.751 47.000 0.171 NA   NA
 52255 52256 CPj0712 CPj0713     TRUE 0.963 14.000 0.146 NA   NA
 52256 52257 CPj0713 CPj0714   hemA FALSE 0.041 367.000 0.000 1.000   NA
 52258 52259 CPj0715 CPj0716 gyrB_2 gyrA_2 TRUE 0.995 4.000 0.110 0.004 Y NA
 52259 52260 CPj0716 CPj0717 gyrA_2   FALSE 0.245 105.000 0.007 NA   NA
 52260 52261 CPj0717 CPj0718     TRUE 0.961 0.000 1.000 NA   NA
 52261 52262 CPj0718 CPj0719   sfhB FALSE 0.040 287.000 0.002 NA   NA
 52262 52263 CPj0719 CPj0720 sfhB   FALSE 0.396 110.000 0.004 0.036   NA
 52264 52265 CPj0721 CPj0722 kdsA   TRUE 0.824 -3.000 0.011 NA   NA
 52265 52266 CPj0722 CPj0723   yhbG TRUE 0.912 7.000 0.009 NA   NA
 52267 52268 CPj0724 CPj0725     FALSE 0.289 57.000 0.000 NA   NA
 52268 52269 CPj0725 CPj0726     TRUE 0.662 66.000 0.500 NA   NA
 52271 52272 CPj0728 CPj0729     TRUE 0.587 112.000 0.833 NA   NA
 52272 52273 CPj0729 CPj0730   mviN FALSE 0.265 103.000 0.008 NA   NA
 52274 52275 CPj0731 CPj0732   nfo FALSE 0.029 335.000 0.000 NA   NA
 52278 52279 CPj0735 CPj0736   ygeD FALSE 0.050 321.000 0.000 1.000 N NA
 52280 52281 CPj0737 CPj0738 recC recB TRUE 0.986 -13.000 0.542 0.004 Y NA
 52282 52283 CPj0739 CPj0740   tyrB TRUE 0.730 -10.000 0.005 1.000 N NA
 52283 397622 CPj0740 CPjt28 tyrB tRNA-Ala FALSE 0.224 71.000 0.000 NA   NA
 397622 52284 CPjt28 CPj0741 tRNA-Ala greA TRUE 0.584 -9.000 0.000 NA   NA
 52285 52286 CPj0742 CPj0743   nqrA TRUE 0.539 71.000 0.086 NA   NA
 52287 52288 CPj0744 CPj0745 hemB   FALSE 0.028 355.000 0.000 NA   NA
 52289 52290 CPj0746 CPj0747A     FALSE 0.150 112.000 0.000 NA   NA
 52292 52293 CPj0748 CPj0749 ispA glmU TRUE 0.899 16.000 0.000 1.000   NA
 52293 52294 CPj0749 CPj0750 glmU tctD FALSE 0.289 75.000 0.000 1.000   NA
 52295 52296 CPj0751 CPj0752   recD_2 FALSE 0.243 167.000 0.023 1.000   NA
 52297 52298 CPj0753 CPj0754   rs20 TRUE 0.684 31.000 0.004 NA   NA
 52299 52300 CPj0755 CPj0756   rpoD TRUE 0.439 159.000 0.857 NA   NA
 52300 52301 CPj0756 CPj0757 rpoD folX TRUE 0.684 54.000 0.030 1.000 N NA
 52301 52302 CPj0757 CPj0758 folX folP TRUE 0.949 -27.000 0.030 1.000 Y NA
 52302 52303 CPj0758 CPj0759 folP folA TRUE 0.982 26.000 0.015 1.000 Y NA
 52303 52304 CPj0759 CPj0760 folA   TRUE 0.667 -43.000 0.017 NA   NA
 52304 52305 CPj0760 CPj0761     TRUE 0.950 7.000 0.055 NA   NA
 52306 52307 CPj0762 CPj0763 recA ygfA FALSE 0.044 372.000 0.000 1.000 N NA
 52307 52308 CPj0763 CPj0764 ygfA   TRUE 0.890 10.000 0.006 NA   NA
 52308 52309 CPj0764 CPj0765     TRUE 0.889 -9.000 0.429 NA   NA
 52309 52310 CPj0765 CPj0766     TRUE 0.979 9.000 1.000 NA   NA
 52311 52312 CPj0767 CPj0768   yohI TRUE 0.647 -21.000 0.005 1.000   NA
 52315 52316 CPj0771 CPj0772 rpoN uvrD TRUE 0.928 3.000 0.015 1.000 N NA
 52317 52318 CPj0773 CPj0774 ung   TRUE 0.900 -3.000 0.140 NA   NA
 52320 52321 CPj0776 CPj0777   groEL_2 TRUE 0.431 111.000 0.128 NA   NA
 52323 52324 CPj0779 CPj0780   amiB TRUE 0.588 107.000 0.750 NA   NA
 52324 52325 CPj0780 CPj0781 amiB pal TRUE 0.924 -10.000 0.750 1.000   NA
 52325 52326 CPj0781 CPj0782 pal tolB TRUE 0.954 -3.000 0.750 1.000 N NA
 52326 52327 CPj0782 CPj0783 tolB   TRUE 0.923 32.000 0.750 NA   NA
 52327 52328 CPj0783 CPj0784   exbD TRUE 0.961 4.000 0.500 NA   NA
 52328 52329 CPj0784 CPj0785 exbD exbB TRUE 0.992 -3.000 0.583 0.031 Y NA
 52330 52331 CPj0786 CPj0787 dsbD yabD FALSE 0.058 323.000 0.008 NA N NA
 52331 52332 CPj0787 CPj0788 yabD sdhC FALSE 0.190 138.000 0.007 NA N NA
 52332 52333 CPj0788 CPj0789 sdhC sdhA TRUE 0.995 4.000 0.179 0.003 Y NA
 52333 52334 CPj0789 CPj0790 sdhA sdhB TRUE 0.997 11.000 0.231 0.003 Y NA
 52335 52336 CPj0791 CPj0792     TRUE 0.726 55.000 0.429 NA   NA
 52336 52337 CPj0792 CPj0793   rbsU TRUE 0.952 -3.000 0.750 1.000   NA
 52338 52339 CPj0794 CPj0795     FALSE 0.134 121.000 0.000 NA   NA
 52339 52340 CPj0795 CPj0796     FALSE 0.161 103.000 0.000 NA   NA
 52340 52341 CPj0796 CPj0797     FALSE 0.038 257.000 0.000 NA   NA
 52341 52342 CPj0797 CPj0798     FALSE 0.101 149.000 0.000 NA   NA
 52343 52344 CPj0799 CPj0800   eno FALSE 0.037 260.000 0.000 NA   NA
 52344 52345 CPj0800 CPj0801 eno uvrB FALSE 0.121 192.000 0.006 1.000 N NA
 52345 52346 CPj0801 CPj0802 uvrB trpS TRUE 0.953 9.000 0.006 0.049 N NA
 52346 52347 CPj0802 CPj0803 trpS   TRUE 0.949 9.000 0.039 NA   NA
 52347 52348 CPj0803 CPj0804   gp6D TRUE 0.968 4.000 0.750 NA   NA
 52348 52349 CPj0804 CPj0805 gp6D minD TRUE 0.974 5.000 0.875 NA   NA
 52349 52350 CPj0805 CPj0806 minD thrS TRUE 0.873 33.000 0.035 1.000 N NA
 52352 52353 CPj0808 CPj0809     TRUE 0.961 33.000 0.750 0.007   NA
 52353 52354 CPj0809 CPj0810     TRUE 0.901 37.000 0.857 NA   NA
 52354 52355 CPj0810 CPj0811   lcrH_1 TRUE 0.811 21.000 0.000 NA   NA
 52356 52357 CPj0812 CPj0813 mutL pepP TRUE 0.923 5.000 0.007 1.000 N NA
 52357 52358 CPj0813 CPj0814 pepP   FALSE 0.167 170.000 0.014 NA   NA
 52358 52359 CPj0814 CPj0815   gspD TRUE 0.946 1.000 0.467 NA   NA
 52359 52360 CPj0815 CPj0816 gspD gspE TRUE 0.979 -10.000 0.467 1.000 Y NA
 52360 52361 CPj0816 CPj0817 gspE gspF TRUE 0.992 10.000 0.035 1.000 Y NA
 52361 52362 CPj0817 CPj0818 gspF   TRUE 0.915 24.000 0.030 NA   NA
 52362 52363 CPj0818 CPj0819     TRUE 0.966 4.000 0.667 NA   NA
 52363 52364 CPj0819 CPj0820     TRUE 0.882 -15.000 0.667 NA   NA
 52364 52365 CPj0820 CPj0821     TRUE 0.477 139.000 0.667 NA   NA
 52365 52366 CPj0821 CPj0822     TRUE 0.669 85.000 1.000 NA   NA
 52367 52368 CPj0823 CPj0824 yscT yscS TRUE 0.996 8.000 0.875 1.000 Y NA
 52368 52369 CPj0824 CPj0825 yscS yscR TRUE 0.998 12.000 0.700 0.011 Y NA
 52369 52370 CPj0825 CPj0826 yscR yscL TRUE 0.996 15.000 0.700 1.000 Y NA
 52370 52371 CPj0826 CPj0827 yscL   TRUE 0.498 121.000 0.556 NA   NA
 52371 52372 CPj0827 CPj0828   yscJ TRUE 0.959 0.000 0.875 NA   NA
 52373 52374 CPj0829 CPj0830     FALSE 0.108 143.000 0.000 NA   NA
 52374 52375 CPj0830 CPj0831     FALSE 0.031 305.000 0.000 NA   NA
 52376 52377 CPj0832 CPj0833 lipA lpdA TRUE 0.861 -3.000 0.009 1.000 N NA
 52379 52380 CPj0835 CPj0836   brnQ TRUE 0.938 30.000 0.545 1.000 N NA
 52380 52381 CPj0836 CPj0837 brnQ nth FALSE 0.071 263.000 0.004 1.000 N NA
 52381 52382 CPj0837 CPj0838 nth thdF TRUE 0.927 7.000 0.007 1.000   NA
 52383 52384 CPj0839 CPj0840 psdD   FALSE 0.376 60.000 0.000 1.000   NA
 52384 52385 CPj0840 CPj0841   secA_2 FALSE 0.092 184.000 0.000 1.000   NA
 52386 52387 CPj0842 CPj0843     FALSE 0.157 108.000 0.000 NA   NA
 52387 52388 CPj0843 CPj0844   yphC FALSE 0.246 76.000 0.005 NA   NA
 52388 52389 CPj0844 CPj0845 yphC pcnB_1 FALSE 0.266 117.000 0.006 1.000   NA
 52389 52390 CPj0845 CPj0846 pcnB_1 clpX TRUE 0.804 30.000 0.006 1.000 N NA
 52390 52391 CPj0846 CPj0847 clpX clpP_2 TRUE 0.995 10.000 0.352 1.000 Y NA
 52391 52392 CPj0847 CPj0848 clpP_2 tigA TRUE 0.698 179.000 0.351 1.000 Y NA
 397632 52393 CPjt31 CPj0849 tRNA-Gly   FALSE 0.063 181.000 0.000 NA   NA
 52393 52394 CPj0849 CPj0850   mreB TRUE 0.932 5.000 0.009 1.000 N NA
 52394 52395 CPj0850 CPj0851 mreB pckA TRUE 0.921 3.000 0.011 1.000 N NA
 52395 52396 CPj0851 CPj0852 pckA   FALSE 0.332 118.000 0.026 NA   NA
 52396 52397 CPj0852 CPj0853     TRUE 0.974 21.000 1.000 NA   NA
 52398 52399 CPj0854 CPj0855 ompB gpdA FALSE 0.362 154.000 0.375 NA   NA
 52399 52400 CPj0855 CPj0856 gpdA   TRUE 0.912 -3.000 0.044 1.000 N NA
 52400 52401 CPj0856 CPj0857     TRUE 0.956 12.000 0.044 NA   NA
 52401 52402 CPj0857 CPj0858   fliI TRUE 0.927 -3.000 0.500 NA   NA
 52402 52403 CPj0858 CPj0859 fliI   TRUE 0.676 -3.000 0.000 NA   NA
 52403 52404 CPj0859 CPj0860   fliF TRUE 0.970 17.000 0.500 NA   NA
 52404 52405 CPj0860 CPj0861 fliF   FALSE 0.129 292.000 0.136 NA N NA
 52405 52406 CPj0861 CPj0862   yfhO_2 TRUE 0.924 -3.000 0.138 1.000 N NA
 52406 52407 CPj0862 CPj0863 yfhO_2 pgmA TRUE 0.743 -45.000 0.021 1.000 N NA
 52408 52409 CPj0864 CPj0865 yjbC   TRUE 0.800 41.000 0.080 NA   NA
 52412 52413 CPj0868 CPj0869 zntA   TRUE 0.967 12.000 0.052 1.000   NA
 52413 52414 CPj0869 CPj0870   serS TRUE 0.839 44.000 0.286 1.000   NA
 52415 52416 CPj0871 CPj0872 ribD ribA_ribB TRUE 0.910 61.000 0.007 0.004 Y NA
 52416 52417 CPj0872 CPj0873 ribA_ribB ribE TRUE 0.994 14.000 0.006 0.004 Y NA
 52419 52420 CPj0875 CPj0876   dagA_2 TRUE 0.452 119.000 0.316 NA   NA
 52420 52421 CPj0876 CPj0877 dagA_2 ybcL TRUE 0.969 13.000 0.316 NA   NA
 52422 52423 CPj0878 CPj0879   yycJ TRUE 0.809 -12.000 0.016 1.000   NA
 52423 52424 CPj0879 CPj0880 yycJ ftsK TRUE 0.918 2.000 0.016 1.000   NA
 2132980 3669458 CPjt32 CPjr01 tRNA-His   FALSE 0.024 539.000 0.000 NA   NA
 3669458 3669459 CPjr01 CPjr02     FALSE 0.049 220.000 0.000 NA   NA
 3669459 3669460 CPjr02 CPjr03     FALSE 0.150 112.000 0.000 NA   NA
 3669460 52425 CPjr03 CPj0881     FALSE 0.088 157.000 0.000 NA   NA
 52425 52426 CPj0881 CPj0882     FALSE 0.300 56.000 0.000 NA   NA
 52427 52428 CPj0883 CPj0884 nqr6   FALSE 0.187 141.000 0.007 NA N NA
 52428 52429 CPj0884 CPj0885   ygcA FALSE 0.346 71.000 0.007 NA N NA
 52429 52430 CPj0885 CPj0886 ygcA hctA FALSE 0.149 270.000 0.048 1.000   NA
 52432 52433 CPj0888 CPj0889 hemG hemN_2 TRUE 0.981 36.000 0.056 0.004 Y NA
 52433 52434 CPj0889 CPj0890 hemN_2 hemE TRUE 0.969 -19.000 0.012 0.004 Y NA
 52434 52435 CPj0890 CPj0891 hemE mfd TRUE 0.933 11.000 0.006 1.000 N NA
 52435 52436 CPj0891 CPj0892 mfd alaS TRUE 0.649 -30.000 0.006 1.000 N NA
 52439 52440 CPj0895 CPj0896 efp_2   TRUE 0.643 35.000 0.006 NA   NA
 52441 52442 CPj0897 CPj0898   groEL_3 FALSE 0.262 164.000 0.027 1.000   NA
 397630 52443 CPjt33 CPj0899 tRNA-Cys murF FALSE 0.034 272.000 0.000 NA   NA
 52443 52444 CPj0899 CPj0900 murF mraY TRUE 0.995 17.000 0.018 0.007 Y NA
 52444 52445 CPj0900 CPj0901 mraY murD TRUE 0.996 3.000 0.647 0.007 Y NA
 52445 52446 CPj0901 CPj0902 murD nlpD TRUE 0.982 3.000 0.006 1.000 Y NA
 52446 52447 CPj0902 CPj0903 nlpD ftsW TRUE 0.963 19.000 0.088 1.000 N NA
 52447 52448 CPj0903 CPj0904 ftsW murG TRUE 0.743 -94.000 0.037 1.000 N NA
 52448 52449 CPj0904 CPj0905 murG murC_ddlA TRUE 0.994 10.000 0.270 1.000 Y NA
 52450 52451 CPj0906 CPj0907   cutA FALSE 0.350 102.000 0.009 1.000   NA
 52451 52452 CPj0907 CPj0908 cutA   TRUE 0.817 -3.000 0.010 NA   NA
 52453 52454 CPj0909 CPj0910 rsbV_2 miaA TRUE 0.964 10.000 0.040 1.000 N NA
 52456 52457 CPj0912 CPj0913     TRUE 0.676 -3.000 0.000 NA   NA
 52457 52458 CPj0913 CPj0914     FALSE 0.350 51.000 0.000 NA   NA
 52458 52459 CPj0914 CPj0915   ybeB FALSE 0.270 61.000 0.000 NA   NA
 52459 52460 CPj0915 CPj0916 ybeB fabF TRUE 0.906 17.000 0.008 NA   NA
 52460 52461 CPj0916 CPj0917 fabF   TRUE 0.961 3.000 0.333 1.000 N NA
 52465 52466 CPj0921 CPj0922   aas TRUE 0.994 18.000 0.032 0.033 Y NA
 52466 52467 CPj0922 CPj0923 aas bioF_1 TRUE 0.687 54.000 0.032 1.000 N NA
 52468 52469 CPj0924 CPj0925 priA   TRUE 0.541 -51.000 0.007 NA   NA
 52471 52472 CPj0927 CPj0928     FALSE 0.214 72.000 0.000 NA   NA
 52472 52473 CPj0928 CPj0929     FALSE 0.068 175.000 0.000 NA   NA
 52474 52475 CPj0930 CPj0931   lysS FALSE 0.024 805.000 0.000 NA   NA
 52478 52479 CPj0934 CPj0935 rnpA rl34 TRUE 0.983 12.000 0.787 1.000   NA
 52480 52481 CPj0936 CPj0937 rl36 rs14 TRUE 0.955 23.000 0.013 0.036   NA
 52484 52485 CPj0940 CPj0941 uvrC mutS TRUE 0.981 3.000 0.006 1.000 Y NA
 52486 52487 CPj0942 CPj0943 dnaG   FALSE 0.255 221.000 0.625 NA   NA
 52487 52488 CPj0943 CPj0944     FALSE 0.181 271.000 0.500 NA   NA
 52488 52489 CPj0944 CPj0945     TRUE 0.614 70.000 0.333 NA   NA
 397625 52493 CPjt34 CPj0949 tRNA-Gln ctc FALSE 0.040 253.000 0.000 NA   NA
 52493 52494 CPj0949 CPj0950 ctc pth TRUE 0.994 2.000 0.496 0.056 Y NA
 52494 52495 CPj0950 CPj0951 pth rs6 TRUE 0.866 92.000 0.029 0.056 Y NA
 52495 52496 CPj0951 CPj0952 rs6 rs18 TRUE 0.996 18.000 0.319 0.036 Y NA
 52496 52497 CPj0952 CPj0953 rs18 rl9 TRUE 0.997 16.000 0.499 0.036 Y NA
 52497 52498 CPj0953 CPj0954 rl9   TRUE 0.760 35.000 0.007 1.000   NA
 52498 52499 CPj0954 CPj0955     TRUE 0.806 -66.000 0.009 0.002   NA
 52499 52500 CPj0955 CPj0956     FALSE 0.026 382.000 0.000 NA   NA
 52501 52502 CPj0957 CPj0958 ide plsB TRUE 0.834 2.000 0.000 1.000   NA
 52502 52503 CPj0958 CPj0959 plsB cafE TRUE 0.955 11.000 0.019 1.000   NA
 52504 52505 CPj0960 CPj0961   rl32 TRUE 0.889 13.000 0.005 NA   NA
 52505 52506 CPj0961 CPj0962 rl32 plsX TRUE 0.977 16.000 0.418 1.000 N NA
 52506 52507 CPj0962 CPj0963 plsX pmp_21 FALSE 0.238 120.000 0.005 1.000   NA
 52508 52509 CPj0964 CPj0965   lpxB FALSE 0.121 164.000 0.000 1.000   NA
 52509 52510 CPj0965 CPj0966 lpxB pcnB_2 TRUE 0.944 9.000 0.010 1.000 N NA
 52511 52512 CPj0967 CPj0968 pgm glmS TRUE 0.956 7.000 0.030 1.000 N NA
 52512 52513 CPj0968 CPj0969 glmS tyrP_1 FALSE 0.336 88.000 0.006 1.000 N NA
 52513 52514 CPj0969 CPj0970 tyrP_1 yccA_2 TRUE 0.767 51.000 0.500 NA   NA
 52516 52517 CPj0972 CPj0973 sucC sucD TRUE 0.997 14.000 0.467 0.002 Y NA
 52517 52518 CPj0973 CPj0975 sucD   FALSE 0.024 679.000 0.000 NA   NA
 52518 52519 CPj0975 CPj0976     FALSE 0.025 444.000 0.000 NA   NA
 52519 52520 CPj0976 CPj0977     FALSE 0.061 183.000 0.000 NA   NA
 52520 52521 CPj0977 CPj0978   htrA FALSE 0.034 278.000 0.000 NA   NA
 52524 52525 CPj0982 CPj0983 yigN pssA TRUE 0.924 9.000 0.011 NA   NA
 52526 52527 CPj0984 CPj0985 nrdA nrdB TRUE 0.997 21.000 0.564 0.002 Y NA
 52527 52528 CPj0985 CPj0986 nrdB yggH FALSE 0.222 150.000 0.008 1.000   NA
 52528 397629 CPj0986 CPjt35 yggH tRNA-Va TRUE 0.584 -9.000 0.000 NA   NA
 397629 52529 CPjt35 CPj0987 tRNA-Va ytgB_2 FALSE 0.329 54.000 0.000 NA   NA
 52530 52531 CPj0988 CPj0989 murB   TRUE 0.875 27.000 0.008 1.000 N NA
 52532 52533 CPj0990 CPj0991 infC rl35 TRUE 0.973 -22.000 0.652 1.000 Y NA
 52533 52534 CPj0991 CPj0992 rl35 rl20 TRUE 0.997 19.000 0.928 0.035 Y NA
 52534 52535 CPj0992 CPj0993 rl20 pheS TRUE 0.994 15.000 0.202 1.000 Y NA
 52535 2132981 CPj0993 CPjt36 pheS tRNA-Ser TRUE 0.748 1.000 0.000 NA   NA
 2132981 52536 CPjt36 CPj0994 tRNA-Ser   FALSE 0.033 281.000 0.000 NA   NA
 52537 52538 CPj0995 CPj0996     TRUE 0.981 4.000 0.631 0.041   NA
 52539 52540 CPj0997 CPj0998 mesJ ftsH FALSE 0.270 188.000 0.145 1.000 N NA
 52541 52542 CPj0999 CPj1000 pnp rs15 TRUE 0.970 41.000 0.335 1.000 Y NA
 52543 52544 CPj1001 CPj1002 yfhC   TRUE 0.760 -10.000 0.013 NA   NA
 52545 52546 CPj1003 CPj1004     TRUE 0.678 80.000 1.000 NA   NA
 52546 52547 CPj1004 CPj1005     TRUE 0.981 15.000 1.000 NA   NA
 52547 52548 CPj1005 CPj1006     TRUE 0.814 54.000 1.000 NA   NA
 52549 52550 CPj1007 CPj1008     TRUE 0.970 18.000 0.571 NA   NA
 52551 52552 CPj1009 CPj1010 map   TRUE 0.966 6.000 0.429 NA N NA
 52552 52553 CPj1010 CPj1011     TRUE 0.496 227.000 0.042 NA Y NA
 52553 52554 CPj1011 CPj1012   yzeB FALSE 0.346 112.000 0.020 NA N NA
 52557 52558 CPj1015 CPj1016     FALSE 0.393 146.000 0.400 NA   NA
 52558 52559 CPj1016 CPj1017   lytB TRUE 0.570 105.000 0.400 1.000   NA
 52559 52560 CPj1017 CPj1018 lytB   TRUE 0.431 -40.000 0.000 NA   NA
 52561 52562 CPj1019 CPj1020     TRUE 0.977 19.000 1.000 NA   NA
 52562 52563 CPj1020 CPj1021   lcrH_2 TRUE 0.850 16.000 0.000 NA   NA
 52563 52564 CPj1021 CPj1022 lcrH_2   TRUE 0.732 0.000 0.000 NA   NA
 397627 52565 CPjt37 CPj1023 tRNA-Leu   FALSE 0.176 91.000 0.000 NA   NA
 52567 52568 CPj1025 CPj1026 pgi   FALSE 0.422 115.000 0.133 NA   NA
 52568 52569 CPj1026 CPj1027     TRUE 0.562 35.000 0.000 NA   NA
 52569 52570 CPj1027 CPj1028   mdhC FALSE 0.038 258.000 0.000 NA   NA
 52570 52571 CPj1028 CPj1029 mdhC   TRUE 0.929 6.000 0.018 NA   NA
 52572 52573 CPj1030 CPj1031   arcD TRUE 0.483 221.000 0.011 1.000 Y NA
 52573 52574 CPj1031 CPj1032 arcD   TRUE 0.977 11.000 0.429 1.000   NA
 52574 52575 CPj1032 CPj1033     TRUE 0.909 34.000 0.429 1.000   NA
 52575 52576 CPj1033 CPj1034     FALSE 0.191 229.000 0.300 NA   NA
 52576 52577 CPj1034 CPj1035   aroE TRUE 0.722 50.000 0.214 NA   NA
 52577 52578 CPj1035 CPj1036 aroE aroB TRUE 0.963 -19.000 0.007 0.004 Y NA
 52578 52579 CPj1036 CPj1037 aroB aroC TRUE 0.980 -15.000 0.110 0.004 Y NA
 52579 52580 CPj1037 CPj1038 aroC aroL TRUE 0.967 -3.000 0.006 1.000 Y NA
 52580 52581 CPj1038 CPj1039 aroL aroA TRUE 0.905 -64.000 0.006 1.000 Y NA
 52581 52582 CPj1039 CPj1040 aroA   FALSE 0.312 71.000 0.000 1.000   NA
 52582 52583 CPj1040 CPj1041   bioA TRUE 0.649 -18.000 0.003 1.000   NA
 52583 52584 CPj1041 CPj1042 bioA bioD TRUE 0.970 -63.000 0.124 0.003 Y NA
 52584 52585 CPj1042 CPj1043 bioD bioF_2 TRUE 0.962 -21.000 0.097 1.000 Y NA
 52585 52586 CPj1043 CPj1044 bioF_2 bioB TRUE 0.938 -21.000 0.008 1.000 Y NA
 52586 52587 CPj1044 CPj1045 bioB   FALSE 0.053 207.000 0.000 NA   NA
 52587 52588 CPj1045 CPj1046     TRUE 0.854 -3.000 0.020 NA   NA
 52589 52590 CPj1047 CPj1048 dapB asd TRUE 0.437 260.000 0.005 0.046 Y NA
 52590 52591 CPj1048 CPj1049 asd lysC TRUE 0.963 -12.000 0.022 1.000 Y NA
 52591 52592 CPj1049 CPj1050 lysC dapA TRUE 0.991 9.000 0.021 1.000 Y NA
 52592 52593 CPj1050 CPj1051 dapA   FALSE 0.083 161.000 0.000 NA   NA
 52593 52594 CPj1051 CPj1052     FALSE 0.107 144.000 0.000 NA   NA
 52594 52595 CPj1052 CPj1053     TRUE 0.490 -19.000 0.000 NA   NA
 52595 52596 CPj1053 CPj1054     FALSE 0.029 330.000 0.000 NA   NA
 52596 52597 CPj1054 CPj1055     FALSE 0.024 2298.000 0.000 NA   NA
 52597 52598 CPj1055 CPj1056     TRUE 0.779 3.000 0.000 NA   NA
 52598 52599 CPj1056 CPj1057     FALSE 0.036 266.000 0.000 NA   NA
 52599 52600 CPj1057 CPj1058     TRUE 0.497 149.000 0.667 1.000   NA
 52600 52601 CPj1058 CPj1059   kgsA TRUE 0.913 9.000 0.005 1.000   NA
 52602 52603 CPj1060 CPj1061 tktB_2   TRUE 0.911 5.000 0.011 NA   NA
 52603 52604 CPj1061 CPj1062   xseA FALSE 0.043 236.000 0.000 NA   NA
 52605 52606 CPj1063 CPj1064 tpiS   TRUE 0.800 4.000 0.000 NA   NA
 52608 52609 CPj1066 CPj1067   def FALSE 0.076 244.000 0.002 1.000 N NA
 52612 52613 CPj1070 CPj1071     FALSE 0.026 372.000 0.000 NA   NA
 52614 52615 CPj1072 CPj1073     FALSE 0.399 173.000 1.000 NA   NA
 2132982 51547 CPjt38 CPj0001 tRNA-Ser   FALSE 0.053 203.000 0.000 NA   NA