MicrobesOnline Operon Predictions for Chlamydophila pneumoniae CWL029

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 28351 28352 CPn0002 CPn0003 gatC gatA TRUE 0.997 17.000 0.643 0.005 Y NA
 28352 28353 CPn0003 CPn0004 gatA gatB TRUE 0.993 -3.000 0.492 0.005 Y NA
 28353 28354 CPn0004 CPn0005 gatB pmp_1 FALSE 0.043 291.000 0.000 1.000   NA
 28356 28357 CPn0007 CPn0008     FALSE 0.018 476.000 0.000 NA   NA
 28357 28358 CPn0008 CPn0009     FALSE 0.155 127.000 0.000 NA   NA
 28358 28359 CPn0009 CPn0010     FALSE 0.029 313.000 0.000 NA   NA
 28359 28360 CPn0010 CPn0010.1     TRUE 0.425 51.000 0.000 NA   NA
 28360 28361 CPn0010.1 CPn0011     FALSE 0.140 143.000 0.000 NA   NA
 28361 28362 CPn0011 CPn0012     TRUE 0.770 27.000 0.000 NA   NA
 28362 28363 CPn0012 CPn0013   pmp_2 FALSE 0.022 369.000 0.000 NA   NA
 28363 10729978 CPn0013 CPn0014 pmp_2   FALSE 0.036 283.000 0.000 NA   NA
 10729978 10729979 CPn0014 CPn0016     FALSE 0.015 2491.000 0.000 NA   NA
 10729979 10729980 CPn0016 CPn0017     TRUE 0.581 -97.000 0.000 NA   NA
 10729980 10729981 CPn0017 CPn0018     FALSE 0.025 349.000 0.000 NA   NA
 10729981 10729982 CPn0018 CPn0019     TRUE 0.800 1.000 0.000 NA   NA
 28364 28365 CPn0020 CPn0021     TRUE 0.966 17.000 0.500 NA   NA
 28365 28366 CPn0021 CPn0022   maf TRUE 0.763 -18.000 0.017 NA N NA
 28366 28367 CPn0022 CPn0023 maf yjjK TRUE 0.848 29.000 0.017 NA   NA
 28367 28368 CPn0023 CPn0024 yjjK xerC TRUE 0.558 55.000 0.010 1.000   NA
 28368 28369 CPn0024 CPn0025 xerC atsA FALSE 0.345 85.000 0.009 1.000   NA
 28369 28370 CPn0025 CPn0026 atsA   FALSE 0.119 155.000 0.000 NA   NA
 28370 28371 CPn0026 CPn0027   lon FALSE 0.126 150.000 0.000 NA   NA
 28371 28372 CPn0027 CPn0028 lon   FALSE 0.030 306.000 0.000 NA   NA
 28372 28373 CPn0028 CPn0029     FALSE 0.313 62.000 0.000 NA   NA
 28374 28375 CPn0030 CPn0031 gcp_1 rs21 FALSE 0.129 179.000 0.006 1.000   NA
 28375 28376 CPn0031 CPn0032 rs21 dnaJ TRUE 0.883 36.000 0.412 1.000   NA
 28376 28377 CPn0032 CPn0033 dnaJ pdhA/pdhB TRUE 0.610 37.000 0.000 1.000 N NA
 28378 28379 CPn0034 CPn0035     FALSE 0.182 109.000 0.002 NA   NA
 28380 28381 CPn0036 CPn0037   ptsH TRUE 0.721 -7.000 0.000 NA   NA
 28381 28382 CPn0037 CPn0038 ptsH ptsI TRUE 0.991 1.000 0.026 0.007 Y NA
 28383 28384 CPn0039 CPn0040 ybaB dnaX_1 TRUE 0.634 65.000 0.411 NA   NA
 28385 28386 CPn0041 CPn0042     FALSE 0.342 58.000 0.000 NA   NA
 28386 28387 CPn0042 CPn0043     FALSE 0.041 262.000 0.000 NA   NA
 28387 28388 CPn0043 CPn0044     TRUE 0.535 44.000 0.000 NA   NA
 28388 28389 CPn0044 CPn0045     FALSE 0.034 288.000 0.000 NA   NA
 28389 28390 CPn0045 CPn0046     TRUE 0.762 -3.000 0.000 NA   NA
 28390 28391 CPn0046 CPn0047     FALSE 0.078 189.000 0.000 NA   NA
 28391 28392 CPn0047 CPn0048   yqfF TRUE 0.679 32.000 0.000 NA   NA
 28393 28394 CPn0049 CPn0050     FALSE 0.071 200.000 0.000 NA   NA
 28396 28397 CPn0052 CPn0053 hemC sms TRUE 0.718 -22.000 0.007 1.000 N NA
 28397 28398 CPn0053 CPn0054 sms rnc TRUE 0.700 -34.000 0.007 1.000 N NA
 28399 28400 CPn0055 CPn0056   mrsA FALSE 0.056 360.000 0.034 NA   NA
 28400 28401 CPn0056 CPn0057 mrsA sodM FALSE 0.205 185.000 0.067 1.000 N NA
 28401 28402 CPn0057 CPn0058 sodM accD FALSE 0.306 82.000 0.009 1.000 N NA
 28402 28403 CPn0058 CPn0059 accD dut TRUE 0.533 51.000 0.008 1.000 N NA
 28403 28404 CPn0059 CPn0060 dut ptsN_1 TRUE 0.867 2.000 0.008 1.000 N NA
 28404 28405 CPn0060 CPn0061 ptsN_1 ptsN_2 TRUE 0.994 3.000 0.231 0.003 Y NA
 28405 28406 CPn0061 CPn0062 ptsN_2   TRUE 0.451 97.000 0.231 NA   NA
 28406 28407 CPn0062 CPn0063     FALSE 0.019 419.000 0.000 NA   NA
 28407 28408 CPn0063 CPn0064     FALSE 0.232 76.000 0.000 NA   NA
 28408 28409 CPn0064 CPn0065     FALSE 0.025 345.000 0.000 NA   NA
 28409 28410 CPn0065 CPn0066     FALSE 0.038 271.000 0.000 NA   NA
 28410 28411 CPn0066 CPn0067     FALSE 0.032 295.000 0.000 NA   NA
 28414 397282 CPn0070 CPnt01   tRNA-Met FALSE 0.255 72.000 0.000 NA   NA
 397282 28415 CPnt01 CPn0071 tRNA-Met   FALSE 0.243 74.000 0.000 NA   NA
 28415 28416 CPn0071 CPn0072     TRUE 0.944 9.000 0.054 NA   NA
 28417 397245 CPn0073 CPnt02 infA tRNA-Thr FALSE 0.222 80.000 0.000 NA   NA
 397245 28418 CPnt02 CPn0074 tRNA-Thr tufA TRUE 0.503 46.000 0.000 NA   NA
 28418 2132653 CPn0074 CPnt03 tufA   TRUE 0.587 40.000 0.000 NA   NA
 2132653 28419 CPnt03 CPn0075   secE TRUE 0.679 32.000 0.000 NA   NA
 28419 28420 CPn0075 CPn0076 secE nusG TRUE 0.970 5.000 0.843 1.000 N NA
 28420 28421 CPn0076 CPn0077 nusG rl11 TRUE 0.544 107.000 0.681 1.000 N NA
 28421 28422 CPn0077 CPn0078 rl11 rl1 TRUE 0.993 27.000 0.838 0.075 Y NA
 28422 28423 CPn0078 CPn0079 rl1 rl10 TRUE 0.994 16.000 0.302 1.000 Y NA
 28423 28424 CPn0079 CPn0080 rl10 rl7 TRUE 0.976 44.000 0.884 1.000 Y NA
 28424 28425 CPn0080 CPn0081 rl7 rpoB FALSE 0.383 137.000 0.223 1.000 N NA
 28425 28426 CPn0081 CPn0082 rpoB rpoC TRUE 0.996 24.000 0.851 0.003 Y NA
 28426 28427 CPn0082 CPn0083 rpoC tal FALSE 0.212 108.000 0.006 1.000 N NA
 28427 28428 CPn0083 CPn0084 tal   TRUE 0.830 47.000 0.667 NA   NA
 28430 28431 CPn0086 CPn0087 atpE   TRUE 0.452 49.000 0.000 NA   NA
 28431 28432 CPn0087 CPn0088   atpA TRUE 0.931 -6.000 0.633 NA   NA
 28432 28433 CPn0088 CPn0089 atpA atpB TRUE 0.996 5.000 0.806 0.011 Y NA
 28433 28434 CPn0089 CPn0090 atpB atpD TRUE 0.991 -15.000 0.903 0.011 Y NA
 28434 28435 CPn0090 CPn0091 atpD atpI TRUE 0.988 -9.000 0.270 0.011 Y NA
 28435 28436 CPn0091 CPn0092 atpI atpK TRUE 0.734 95.000 0.848 0.011   NA
 28436 28437 CPn0092 CPn0093 atpK   TRUE 0.768 -67.000 0.030 NA   NA
 28437 28438 CPn0093 CPn0094   valS FALSE 0.180 134.000 0.006 NA   NA
 28438 28439 CPn0094 CPn0095 valS pknD TRUE 0.871 21.000 0.006 1.000 N NA
 28444 28445 CPn0100 CPn0101   ybbP TRUE 0.866 -3.000 0.018 NA   NA
 28446 28447 CPn0102 CPn0103 cydA cydB TRUE 0.996 11.000 0.622 0.023 Y NA
 28448 28449 CPn0104 CPn0105     TRUE 0.439 151.000 0.750 NA   NA
 28451 28452 CPn0107 CPn0108     FALSE 0.149 138.000 0.000 NA   NA
 28452 2132654 CPn0108 CPns01     FALSE 0.062 217.000 0.000 NA   NA
 28454 28455 CPn0110 CPn0111 lepB   FALSE 0.235 197.000 0.333 NA   NA
 28456 28457 CPn0112 CPn0113 rl31 pfrA FALSE 0.355 239.000 0.005 1.000 Y NA
 28457 28458 CPn0113 CPn0114 pfrA hemK TRUE 0.968 -10.000 0.009 1.000 Y NA
 28458 28459 CPn0114 CPn0115 hemK ffh TRUE 0.888 15.000 0.005 1.000 N NA
 28459 28460 CPn0115 CPn0116 ffh rs16 TRUE 0.908 -9.000 0.361 1.000 N NA
 28460 28461 CPn0116 CPn0117 rs16 trmD TRUE 0.991 14.000 0.033 1.000 Y NA
 28461 28462 CPn0117 CPn0118 trmD rl19 TRUE 0.988 28.000 0.567 1.000 Y NA
 28462 28463 CPn0118 CPn0119 rl19 rnhB_1 TRUE 0.627 56.000 0.066 1.000 N NA
 28463 28464 CPn0119 CPn0120 rnhB_1 gmk TRUE 0.779 -3.000 0.003 1.000 N NA
 28464 28465 CPn0120 CPn0121 gmk   TRUE 0.771 -3.000 0.003 NA   NA
 28465 28466 CPn0121 CPn0122   metG TRUE 0.848 0.000 0.008 NA   NA
 28468 28469 CPn0124 CPn0125     TRUE 0.802 25.000 0.000 NA   NA
 28469 28470 CPn0125 CPn0126     FALSE 0.070 201.000 0.000 NA   NA
 28473 28474 CPn0129 CPn0130     TRUE 0.699 31.000 0.000 NA   NA
 28474 397281 CPn0130 CPnt04   tRNA-Asn FALSE 0.247 73.000 0.000 NA   NA
 28475 28476 CPn0131 CPn0132     TRUE 0.829 4.000 0.000 NA   NA
 28477 28478 CPn0133 CPn0134   groEL_1 FALSE 0.422 130.000 0.400 NA   NA
 28478 28479 CPn0134 CPn0135 groEL_1 groES TRUE 0.981 42.000 0.412 0.015 Y NA
 28479 28480 CPn0135 CPn0136 groES pepF FALSE 0.395 118.000 0.188 1.000 N NA
 28480 28481 CPn0136 CPn0137 pepF ybgI FALSE 0.305 98.000 0.013 NA   NA
 28481 28482 CPn0137 CPn0138 ybgI hemL FALSE 0.018 443.000 0.000 NA   NA
 28482 28483 CPn0138 CPn0139 hemL yqgE FALSE 0.259 71.000 0.006 NA N NA
 28483 28484 CPn0139 CPn0140 yqgE yqdE TRUE 0.925 14.000 0.012 NA   NA
 28484 28485 CPn0140 CPn0141 yqdE rpiA TRUE 0.842 -3.000 0.011 NA   NA
 28485 28486 CPn0141 CPn0142 rpiA   TRUE 0.865 11.000 0.000 NA   NA
 28486 28487 CPn0142 CPn0143   yxjG_1 FALSE 0.160 120.000 0.000 NA   NA
 28488 28489 CPn0144 CPn0145 clpB   FALSE 0.114 214.000 0.009 1.000   NA
 28489 28490 CPn0145 CPn0146     FALSE 0.048 241.000 0.000 NA   NA
 28490 28491 CPn0146 CPn0147     FALSE 0.155 127.000 0.000 NA   NA
 28491 28492 CPn0147 CPn0148     FALSE 0.094 172.000 0.000 NA   NA
 28492 28493 CPn0148 CPn0149   dnlJ TRUE 0.911 10.000 0.006 1.000   NA
 28493 28494 CPn0149 CPn0150 dnlJ   FALSE 0.187 131.000 0.006 NA   NA
 28495 28496 CPn0151 CPn0152 mhpA   FALSE 0.384 173.000 0.857 NA   NA
 28497 28498 CPn0153 CPn0154 leuS gseA TRUE 0.792 -3.000 0.006 1.000 N NA
 28498 397247 CPn0154 CPnt05 gseA tRNA-Met TRUE 0.815 24.000 0.000 NA   NA
 397247 397248 CPnt05 CPnt06 tRNA-Met tRNA-Met TRUE 0.870 16.000 0.000 NA   NA
 28499 28500 CPn0155 CPn0156     FALSE 0.232 76.000 0.000 NA   NA
 28500 28501 CPn0156 CPn0157     FALSE 0.087 178.000 0.000 NA   NA
 28501 28502 CPn0157 CPn0158     FALSE 0.099 168.000 0.000 NA   NA
 28502 28503 CPn0158 CPn0159     TRUE 0.643 34.000 0.000 NA   NA
 28503 28504 CPn0159 CPn0160   pfkA_1 FALSE 0.024 352.000 0.000 NA   NA
 28504 28505 CPn0160 CPn0161 pfkA_1   TRUE 0.972 4.000 0.857 1.000   NA
 28505 28506 CPn0161 CPn0162     FALSE 0.087 178.000 0.000 NA   NA
 28507 28508 CPn0163 CPn0164     FALSE 0.187 101.000 0.000 NA   NA
 28508 28509 CPn0164 CPn0165     TRUE 0.762 -3.000 0.000 NA   NA
 28509 28510 CPn0165 CPn0166     TRUE 0.514 45.000 0.000 NA   NA
 28511 28512 CPn0167 CPn0168     FALSE 0.178 108.000 0.000 NA   NA
 28512 28513 CPn0168 CPn0169     FALSE 0.289 66.000 0.000 NA   NA
 28513 28514 CPn0169 CPn0170     FALSE 0.017 521.000 0.000 NA   NA
 28514 28515 CPn0170 CPn0171   guaA FALSE 0.201 120.000 0.000 1.000   NA
 28515 28516 CPn0171 CPn0172 guaA guaB_1 TRUE 0.989 2.000 0.190 1.000 Y NA
 28516 28517 CPn0172 CPn0172a guaB_1 guaB_2 TRUE 0.562 61.000 0.006 0.049   NA
 28517 28518 CPn0172a CPn0173 guaB_2   FALSE 0.066 211.000 0.000 NA   NA
 28519 28520 CPn0174 CPn0175     FALSE 0.096 171.000 0.000 NA   NA
 28520 28521 CPn0175 CPn0176     TRUE 0.856 8.000 0.000 NA   NA
 28522 28523 CPn0177 CPn0178     FALSE 0.028 327.000 0.000 NA   NA
 28523 28524 CPn0178 CPn0179     TRUE 0.800 1.000 0.000 NA   NA
 28524 28525 CPn0179 CPn0180     TRUE 0.601 -51.000 0.000 NA   NA
 28525 28526 CPn0180 CPn0181     TRUE 0.579 -132.000 0.000 NA   NA
 28526 28527 CPn0181 CPn0182   accC FALSE 0.116 156.000 0.000 NA   NA
 28527 28528 CPn0182 CPn0183 accC accB TRUE 0.986 -3.000 0.011 0.003 Y NA
 28528 28529 CPn0183 CPn0184 accB efp_1 TRUE 0.936 23.000 0.120 1.000 N NA
 28529 28530 CPn0184 CPn0185 efp_1 rpe TRUE 0.741 -13.000 0.007 1.000 N NA
 28531 28532 CPn0186 CPn0187     FALSE 0.069 177.000 0.000 NA N NA
 28532 28533 CPn0187 CPn0188     TRUE 0.517 63.000 0.017 1.000   NA
 28533 28534 CPn0188 CPn0189     TRUE 0.863 -3.000 0.017 NA   NA
 28534 28535 CPn0189 CPn0190     TRUE 0.527 91.000 0.500 NA   NA
 28536 28537 CPn0191 CPn0192 glnQ glnP TRUE 0.989 -10.000 1.000 1.000 Y NA
 28537 28538 CPn0192 CPn0193 glnP argR TRUE 0.791 49.000 0.500 1.000 N NA
 28539 28540 CPn0194 CPn0195 gcp_2 oppA_1 TRUE 0.641 -54.000 0.006 1.000 N NA
 28540 28541 CPn0195 CPn0196 oppA_1 oppA_2 TRUE 0.683 151.000 0.000 0.027 Y NA
 28541 28542 CPn0196 CPn0197 oppA_2 oppA_3 TRUE 0.898 56.000 0.000 0.027 Y NA
 28542 28543 CPn0197 CPn0198 oppA_3 oppA_4 TRUE 0.588 284.000 0.500 0.027 Y NA
 28543 28544 CPn0198 CPn0199 oppA_4 oppB_1 FALSE 0.337 293.000 0.000 0.027 Y NA
 28544 28545 CPn0199 CPn0200 oppB_1 oppC_1 TRUE 0.987 31.000 0.273 0.027 Y NA
 28545 28546 CPn0200 CPn0201 oppC_1 oppD TRUE 0.979 -7.000 0.044 1.000 Y NA
 28546 28547 CPn0201 CPn0202 oppD oppF TRUE 0.989 -3.000 0.044 0.021 Y NA
 28547 28548 CPn0202 CPn0203 oppF   FALSE 0.017 505.000 0.000 NA   NA
 28548 28549 CPn0203 CPn0204     TRUE 0.868 12.000 0.000 NA   NA
 28549 28550 CPn0204 CPn0205     FALSE 0.155 128.000 0.000 NA   NA
 28550 28551 CPn0205 CPn0206     FALSE 0.225 79.000 0.000 NA   NA
 28551 28552 CPn0206 CPn0207   ybhI TRUE 0.796 44.000 0.217 NA   NA
 28552 28553 CPn0207 CPn0208 ybhI pfkA_2 FALSE 0.078 333.000 0.088 1.000 N NA
 28553 28554 CPn0208 CPn0209 pfkA_2   FALSE 0.019 431.000 0.000 NA   NA
 28555 28556 CPn0210 CPn0211     FALSE 0.232 76.000 0.000 NA   NA
 28556 28557 CPn0211 CPn0212     FALSE 0.154 129.000 0.000 NA   NA
 28557 28558 CPn0212 CPn0213     FALSE 0.159 121.000 0.000 NA   NA
 28558 28559 CPn0213 CPn0214     FALSE 0.187 101.000 0.000 NA   NA
 28559 28560 CPn0214 CPn0215     FALSE 0.189 99.000 0.000 NA   NA
 28560 28561 CPn0215 CPn0216     FALSE 0.116 156.000 0.000 NA   NA
 28564 28565 CPn0219 CPn0220 tgt   FALSE 0.059 221.000 0.000 NA   NA
 28565 28566 CPn0220 CPn0221     FALSE 0.019 416.000 0.000 NA   NA
 28566 28567 CPn0221 CPn0222     FALSE 0.018 437.000 0.000 NA   NA
 28567 28568 CPn0222 CPn0223     FALSE 0.172 111.000 0.000 NA   NA
 28568 28569 CPn0223 CPn0224     FALSE 0.189 99.000 0.000 NA   NA
 28569 28570 CPn0224 CPn0225     FALSE 0.075 196.000 0.000 NA   NA
 28570 28571 CPn0225 CPn0226     TRUE 0.831 22.000 0.000 NA   NA
 28572 28573 CPn0227 CPn0228 dsbB dsbG TRUE 0.981 -7.000 0.308 NA Y NA
 28575 28576 CPn0230 CPn0231   tauB TRUE 0.907 -3.000 0.111 NA   NA
 28576 397280 CPn0231 CPnt07 tauB tRNA-Ile TRUE 0.624 35.000 0.000 NA   NA
 397280 397279 CPnt07 CPnt08 tRNA-Ile tRNA-Ala TRUE 0.839 5.000 0.000 NA   NA
 397279 28577 CPnt08 CPn0232 tRNA-Ala   FALSE 0.207 87.000 0.000 NA   NA
 28577 28578 CPn0232 CPn0233     FALSE 0.157 123.000 0.000 NA   NA
 28578 28579 CPn0233 CPn0234     FALSE 0.159 121.000 0.000 NA   NA
 28580 28581 CPn0235 CPn0236 kdsB pyrG TRUE 0.781 -24.000 0.018 1.000 N NA
 28581 28582 CPn0236 CPn0237 pyrG yggF TRUE 0.767 -7.000 0.006 1.000 N NA
 28582 28583 CPn0237 CPn0238 yggF zwf FALSE 0.228 86.000 0.004 1.000 N NA
 28583 28584 CPn0238 CPn0239 zwf devB TRUE 0.891 58.000 0.021 1.000 Y NA
 28585 28586 CPn0240 CPn0241     FALSE 0.026 339.000 0.000 NA   NA
 28586 28587 CPn0241 CPn0242     FALSE 0.153 130.000 0.000 NA   NA
 28587 28588 CPn0242 CPn0243     FALSE 0.064 212.000 0.000 NA   NA
 28589 28590 CPn0244 CPn0245 adk ydhO FALSE 0.296 86.000 0.014 NA N NA
 28591 28592 CPn0246 CPn0247 rs9 rl13 TRUE 0.996 14.000 0.601 0.049 Y NA
 28592 28593 CPn0247 CPn0248 rl13 ycfV FALSE 0.055 232.000 0.000 1.000 N NA
 28593 28594 CPn0248 CPn0249 ycfV   TRUE 0.992 3.000 0.545 1.000 Y NA
 28594 28595 CPn0249 CPn0250   rl33 TRUE 0.431 58.000 0.006 1.000   NA
 10729983 28597 CPn0252 CPn0254     FALSE 0.026 344.000 0.000 NA   NA
 28597 28598 CPn0254 CPn0255     TRUE 0.740 64.000 1.000 NA   NA
 28598 28599 CPn0255 CPn0256     FALSE 0.053 230.000 0.000 NA   NA
 28599 28600 CPn0256 CPn0257     TRUE 0.962 0.000 1.000 NA   NA
 28600 10729984 CPn0257 CPn0258     TRUE 0.819 3.000 0.000 NA   NA
 10729984 397278 CPn0258 CPnt09   tRNA-Tyr FALSE 0.016 783.000 0.000 NA   NA
 397278 397277 CPnt09 CPnt10 tRNA-Tyr tRNA-Thr TRUE 0.847 6.000 0.000 NA   NA
 397277 28601 CPnt10 CPn0260 tRNA-Thr secA_1 FALSE 0.282 68.000 0.000 NA   NA
 28602 28603 CPn0261 CPn0262 ydaO surE TRUE 0.595 55.000 0.015 1.000   NA
 28603 397249 CPn0262 CPnt11 surE tRNA-Val FALSE 0.147 139.000 0.000 NA   NA
 397249 397250 CPnt11 CPnt12 tRNA-Val tRNA-Asp TRUE 0.829 4.000 0.000 NA   NA
 397250 28604 CPnt12 CPn0263 tRNA-Asp yqfU TRUE 0.802 25.000 0.000 NA   NA
 28605 28606 CPn0264 CPn0265 ubiD ubiA TRUE 0.981 -3.000 0.029 1.000 Y NA
 28607 28608 CPn0266 CPn0267     FALSE 0.047 243.000 0.000 NA   NA
 28608 28609 CPn0267 CPn0268     TRUE 0.831 22.000 0.000 NA   NA
 28610 28611 CPn0269 CPn0270   ywlC TRUE 0.911 15.000 0.012 NA N NA
 28613 28614 CPn0272 CPn0273 dnaX_2 tdk TRUE 0.897 -9.000 0.254 1.000 N NA
 28614 28615 CPn0273 CPn0274 tdk gyrA_1 TRUE 0.877 5.000 0.007 1.000 N NA
 28615 28616 CPn0274 CPn0275 gyrA_1 gyrB_1 TRUE 0.996 16.000 0.306 0.005 Y NA
 28616 28617 CPn0275 CPn0276 gyrB_1   TRUE 0.917 4.000 0.028 NA   NA
 28617 28618 CPn0276 CPn0277     FALSE 0.040 264.000 0.000 NA   NA
 28618 28619 CPn0277 CPn0278     FALSE 0.132 147.000 0.000 NA   NA
 28619 28620 CPn0278 CPn0279     TRUE 0.988 -3.000 0.667 NA Y NA
 28620 28621 CPn0279 CPn0280   dppF_1 TRUE 0.992 10.000 0.089 1.000 Y NA
 28622 28623 CPn0281 CPn0282 dhnA xasA TRUE 0.974 20.000 1.000 1.000 N NA
 28624 28625 CPn0283 CPn0284     TRUE 0.425 51.000 0.000 NA   NA
 28625 28626 CPn0284 CPn0285     TRUE 0.819 3.000 0.000 NA   NA
 28626 28627 CPn0285 CPn0286   mgtE TRUE 0.622 52.000 0.033 NA   NA
 28627 28628 CPn0286 CPn0287 mgtE   TRUE 0.915 27.000 0.044 1.000   NA
 28628 28629 CPn0287 CPn0288     FALSE 0.025 347.000 0.000 NA   NA
 28630 28631 CPn0289 CPn0290 aaaT   TRUE 0.840 43.000 0.273 1.000   NA
 28631 28632 CPn0290 CPn0291   incB FALSE 0.375 141.000 0.273 NA   NA
 28632 28633 CPn0291 CPn0292 incB incC TRUE 0.939 31.000 1.000 NA   NA
 28633 28634 CPn0292 CPn0293 incC   TRUE 0.522 110.000 0.667 NA   NA
 28634 28635 CPn0293 CPn0294     FALSE 0.070 366.000 0.182 NA   NA
 28636 28637 CPn0295 CPn0296 acpP fabG TRUE 0.707 156.000 0.007 0.012 Y NA
 28637 28638 CPn0296 CPn0297 fabG fabD TRUE 0.993 6.000 0.019 0.012 Y NA
 28638 28639 CPn0297 CPn0298 fabD fabH TRUE 0.992 17.000 0.009 0.012 Y NA
 28640 28641 CPn0299 CPn0300 recR yaeT FALSE 0.025 365.000 0.003 1.000 N NA
 28641 28642 CPn0300 CPn0301 yaeT   TRUE 0.835 95.000 0.175 1.000 Y NA
 28642 28643 CPn0301 CPn0302   lpxD TRUE 0.987 22.000 0.018 1.000 Y NA
 28645 28646 CPn0304 CPn0305 pdhA pdhB TRUE 0.991 -7.000 0.456 0.002 Y NA
 28646 28647 CPn0305 CPn0306 pdhB pdhC TRUE 0.991 5.000 0.254 1.000 Y NA
 28650 28651 CPn0309 CPn0310 dnaA_1 60IM TRUE 0.654 72.000 0.714 1.000 N NA
 28651 28652 CPn0310 CPn0311 60IM lgt FALSE 0.183 139.000 0.006 1.000 N NA
 28653 28654 CPn0312 CPn0313   acpS TRUE 0.941 11.000 0.036 NA   NA
 28656 28657 CPn0315 CPn0316 rs1 nusA FALSE 0.328 101.000 0.006 0.043 N NA
 28657 28658 CPn0316 CPn0317 nusA infB TRUE 0.862 -43.000 0.342 1.000 N NA
 28658 28659 CPn0317 CPn0318 infB rbfA TRUE 0.995 14.000 0.530 1.000 Y NA
 28659 28660 CPn0318 CPn0319 rbfA truB TRUE 0.953 46.000 0.111 1.000 Y NA
 28660 28661 CPn0319 CPn0320 truB ribF TRUE 0.872 -22.000 0.308 1.000 N NA
 28663 28664 CPn0322 CPn0323 yscU lcrD TRUE 0.992 0.000 0.219 0.014 Y NA
 28664 28665 CPn0323 CPn0324 lcrD lcrE TRUE 0.916 29.000 0.188 1.000   NA
 28665 28666 CPn0324 CPn0325 lcrE sycE TRUE 0.978 17.000 0.240 0.009   NA
 28666 28667 CPn0325 CPn0326 sycE malQ TRUE 0.948 -3.000 0.600 1.000   NA
 28667 28668 CPn0326 CPn0327 malQ rl28 FALSE 0.070 217.000 0.005 1.000 N NA
 28668 28669 CPn0327 CPn0328 rl28   TRUE 0.739 27.000 0.005 NA N NA
 28669 28670 CPn0328 CPn0329     FALSE 0.345 93.000 0.038 NA N NA
 28671 28672 CPn0330 CPn0331     TRUE 0.968 23.000 1.000 NA   NA
 28672 28673 CPn0331 CPn0332     FALSE 0.193 96.000 0.000 NA   NA
 28673 28674 CPn0332 CPn0333     FALSE 0.142 142.000 0.000 NA   NA
 28675 28676 CPn0334 CPn0335   folD TRUE 0.767 -9.000 0.007 NA   NA
 28676 28677 CPn0335 CPn0336 folD yojL TRUE 0.964 -27.000 0.025 1.000 Y NA
 28679 10729985 CPn0338 CPn0339 dnaN   TRUE 0.566 42.000 0.000 NA   NA
 10729985 10729986 CPn0339 CPn0341     FALSE 0.157 123.000 0.000 NA   NA
 10729986 10729987 CPn0341 CPn0342     FALSE 0.156 124.000 0.000 NA   NA
 10729987 10729988 CPn0342 CPn0343     TRUE 0.590 -66.000 0.000 NA   NA
 28680 28681 CPn0344 CPn0345 yaeL yaeM TRUE 0.974 13.000 0.568 1.000   NA
 28681 28682 CPn0345 CPn0346 yaeM ytgD FALSE 0.222 129.000 0.008 1.000 N NA
 28682 28683 CPn0346 CPn0347 ytgD ytgC TRUE 0.994 0.000 0.443 0.006 Y NA
 28683 28684 CPn0347 CPn0348 ytgC ytgB_1 TRUE 0.991 3.000 0.432 1.000 Y NA
 28684 28685 CPn0348 CPn0349 ytgB_1 ytgA TRUE 0.986 -16.000 0.898 1.000 Y NA
 28686 28687 CPn0350 CPn0351   adt_1 FALSE 0.070 201.000 0.000 NA   NA
 28687 28688 CPn0351 CPn0352 adt_1   FALSE 0.147 139.000 0.000 NA   NA
 28688 28689 CPn0352 CPn0353     FALSE 0.334 60.000 0.000 NA   NA
 28689 28690 CPn0353 CPn0354     TRUE 0.737 29.000 0.000 NA   NA
 28691 28692 CPn0355 CPn0356     FALSE 0.062 217.000 0.000 NA   NA
 28692 28693 CPn0356 CPn0357     TRUE 0.853 7.000 0.000 NA   NA
 28693 28694 CPn0357 CPn0358     FALSE 0.043 258.000 0.000 NA   NA
 28696 28697 CPn0360 CPn0361 gnd tyrS TRUE 0.912 21.000 0.014 1.000 N NA
 28697 28698 CPn0361 CPn0362 tyrS rpsD FALSE 0.030 405.000 0.008 1.000 N NA
 28698 28699 CPn0362 CPn0363 rpsD flhA FALSE 0.314 115.000 0.025 1.000 N NA
 397251 28700 CPnt13 CPn0364 tRNA-Pro fer4 TRUE 0.535 44.000 0.000 NA   NA
 28700 28701 CPn0364 CPn0365 fer4   FALSE 0.034 287.000 0.000 NA   NA
 28701 28702 CPn0365 CPn0366     FALSE 0.019 429.000 0.000 NA   NA
 28702 28703 CPn0366 CPn0367     FALSE 0.016 659.000 0.000 NA   NA
 28703 28704 CPn0367 CPn0368     TRUE 0.604 -49.000 0.000 NA   NA
 28704 28705 CPn0368 CPn0369     FALSE 0.048 241.000 0.000 NA   NA
 28705 28706 CPn0369 CPn0370     FALSE 0.051 235.000 0.000 NA   NA
 28706 28707 CPn0370 CPn0371     FALSE 0.052 232.000 0.000 NA   NA
 28707 28708 CPn0371 CPn0372     FALSE 0.084 181.000 0.000 NA   NA
 28708 28709 CPn0372 CPn0373   gcpE FALSE 0.021 376.000 0.000 NA   NA
 28709 28710 CPn0373 CPn0374 gcpE   TRUE 0.835 -3.000 0.009 NA   NA
 28710 28711 CPn0374 CPn0375     FALSE 0.114 157.000 0.000 NA   NA
 28711 28712 CPn0375 CPn0376     FALSE 0.050 236.000 0.000 NA   NA
 28713 28714 CPn0377 CPn0378 sucB_1 sucA TRUE 0.993 4.000 0.667 1.000 Y NA
 28715 28716 CPn0379 CPn0380   hemN_1 TRUE 0.777 -10.000 0.008 NA   NA
 28717 28718 CPn0381 CPn0382   yabC_1 FALSE 0.074 224.000 0.000 1.000   NA
 28718 28719 CPn0382 CPn0383 yabC_1   TRUE 0.847 -3.000 0.007 1.000   NA
 28719 28720 CPn0383 CPn0384   hctB FALSE 0.231 166.000 0.006 0.046   NA
 28720 28721 CPn0384 CPn0385 hctB pepA FALSE 0.285 142.000 0.017 1.000   NA
 28721 28722 CPn0385 CPn0386 pepA ssb TRUE 0.886 25.000 0.013 1.000 N NA
 28722 28723 CPn0386 CPn0387 ssb   FALSE 0.123 171.000 0.000 1.000   NA
 28725 28726 CPn0389 CPn0390   ruvB TRUE 0.846 -3.000 0.007 1.000   NA
 28726 28727 CPn0390 CPn0391 ruvB   FALSE 0.023 363.000 0.000 NA   NA
 28728 28729 CPn0392 CPn0393 dcd   TRUE 0.846 -7.000 0.021 NA   NA
 28729 28730 CPn0393 CPn0394   tlyC_1 TRUE 0.961 10.000 0.364 NA   NA
 28730 28731 CPn0394 CPn0395 tlyC_1   TRUE 0.923 -7.000 0.545 NA   NA
 28732 28733 CPn0396 CPn0397 yhfO   TRUE 0.915 25.000 0.041 1.000 N NA
 28734 28735 CPn0398 CPn0399     FALSE 0.090 176.000 0.000 NA   NA
 28735 28736 CPn0399 CPn0400     TRUE 0.966 10.000 0.500 NA   NA
 28737 28738 CPn0401 CPn0402   mutY TRUE 0.812 1.000 0.005 NA   NA
 28740 28741 CPn0404 CPn0405     FALSE 0.232 76.000 0.000 NA   NA
 28744 28745 CPn0408 CPn0409     TRUE 0.457 61.000 0.012 NA   NA
 28745 28746 CPn0409 CPn0410   dnaQ_1 TRUE 0.875 -7.000 0.050 NA   NA
 28746 28747 CPn0410 CPn0411 dnaQ_1   TRUE 0.883 -3.000 0.031 NA   NA
 28747 28748 CPn0411 CPn0412     TRUE 0.639 -22.000 0.000 NA   NA
 28749 28750 CPn0413 CPn0414 msbA accA TRUE 0.730 -34.000 0.010 1.000 N NA
 28750 28751 CPn0414 CPn0415 accA   FALSE 0.321 75.000 0.008 NA   NA
 28751 28752 CPn0415 CPn0416   himD TRUE 0.649 56.000 0.182 NA   NA
 28753 28754 CPn0417 CPn0418 amiA murE TRUE 0.953 -85.000 0.014 1.000 Y NA
 28754 28755 CPn0418 CPn0419 murE pbp3 FALSE 0.222 472.000 0.022 1.000 Y NA
 28755 28756 CPn0419 CPn0420 pbp3   TRUE 0.868 -13.000 0.135 NA   NA
 28756 28757 CPn0420 CPn0421   yabC_2 TRUE 0.812 -3.000 0.007 NA   NA
 28758 28759 CPn0422 CPn0423     TRUE 0.946 4.000 0.286 NA   NA
 28759 28760 CPn0423 CPn0424   dnaA_2 FALSE 0.027 393.000 0.000 1.000   NA
 28760 28761 CPn0424 CPn0425 dnaA_2   TRUE 0.865 16.000 0.006 NA N NA
 28763 28764 CPn0427 CPn0428 nqr2 nqr3 TRUE 0.994 4.000 0.093 0.002 Y NA
 28764 28765 CPn0428 CPn0429 nqr3 nqr4 TRUE 0.989 -3.000 0.034 0.007 Y NA
 28765 28766 CPn0429 CPn0430 nqr4 nqr5 TRUE 0.993 4.000 0.034 0.007 Y NA
 28767 28768 CPn0431 CPn0432     TRUE 0.752 28.000 0.000 NA   NA
 28768 28769 CPn0432 CPn0433   gcsH TRUE 0.501 110.000 0.571 NA   NA
 28769 28770 CPn0433 CPn0434 gcsH   TRUE 0.959 0.000 0.857 NA   NA
 28770 28771 CPn0434 CPn0435     TRUE 0.937 10.000 0.032 NA   NA
 28771 28772 CPn0435 CPn0436   lplA_1 TRUE 0.930 -3.000 0.032 0.025 N NA
 28775 28776 CPn0439 CPn0440     TRUE 0.954 25.000 0.667 NA   NA
 28776 28777 CPn0440 CPn0441     FALSE 0.131 148.000 0.000 NA   NA
 28777 28778 CPn0441 CPn0442     FALSE 0.331 172.000 0.571 NA   NA
 28778 28779 CPn0442 CPn0443     FALSE 0.289 198.000 0.667 NA   NA
 28779 28780 CPn0443 CPn0444   pmp_6 FALSE 0.030 305.000 0.000 NA   NA
 28780 28781 CPn0444 CPn0445 pmp_6 pmp_7 FALSE 0.099 262.000 0.000 0.023   NA
 28781 28782 CPn0445 CPn0446 pmp_7 pmp_8 TRUE 0.749 44.000 0.000 0.023   NA
 28782 28783 CPn0446 CPn0447 pmp_8 pmp_9 FALSE 0.272 150.000 0.000 0.023   NA
 28784 10729989 CPn0448 CPn0449 yxjG_2   FALSE 0.017 517.000 0.000 NA   NA
 28785 28786 CPn0451 CPn0452 pmp_11 pmp_12 FALSE 0.105 258.000 0.000 0.023   NA
 28786 28787 CPn0452 CPn0453 pmp_12 pmp_13 FALSE 0.054 371.000 0.000 0.023   NA
 28787 28788 CPn0453 CPn0454 pmp_13 pmp_14 TRUE 0.976 27.000 1.000 0.023   NA
 28789 28790 CPn0455 CPn0456     TRUE 0.632 -24.000 0.000 NA   NA
 28790 28791 CPn0456 CPn0457     FALSE 0.016 585.000 0.000 NA   NA
 28791 28792 CPn0457 CPn0458     FALSE 0.022 368.000 0.000 NA   NA
 28792 28793 CPn0458 CPn0459     FALSE 0.031 296.000 0.000 NA   NA
 28793 28794 CPn0459 CPn0460     TRUE 0.664 -16.000 0.000 NA   NA
 28794 28795 CPn0460 CPn0461     TRUE 0.800 1.000 0.000 NA   NA
 28795 28796 CPn0461 CPn0462     FALSE 0.020 396.000 0.000 NA   NA
 28796 28797 CPn0462 CPn0463     FALSE 0.151 136.000 0.000 NA   NA
 28797 28798 CPn0463 CPn0464     TRUE 0.847 6.000 0.000 NA   NA
 28798 28799 CPn0464 CPn0465     TRUE 0.787 26.000 0.000 NA   NA
 28800 28801 CPn0466 CPn0467 pmp_15 pmp_16 FALSE 0.388 93.000 0.000 0.023   NA
 28801 10729990 CPn0467 CPn0468 pmp_16   FALSE 0.076 195.000 0.000 NA   NA
 10729990 28802 CPn0468 CPn0470   pmp_17.3 FALSE 0.015 922.000 0.000 NA   NA
 28802 28803 CPn0470 CPn0471 pmp_17.3 pmp_18 TRUE 0.879 29.000 0.000 0.023   NA
 28804 28805 CPn0472 CPn0473     FALSE 0.109 162.000 0.000 NA   NA
 28805 28806 CPn0473 CPn0474     FALSE 0.066 211.000 0.000 NA   NA
 28806 28807 CPn0474 CPn0475   glgB TRUE 0.458 109.000 0.364 NA   NA
 28807 28808 CPn0475 CPn0476 glgB   TRUE 0.970 11.000 0.636 NA   NA
 28808 28809 CPn0476 CPn0477   yqeV TRUE 0.838 -3.000 0.010 NA   NA
 28809 28810 CPn0477 CPn0478 yqeV hflX FALSE 0.245 101.000 0.005 1.000   NA
 28810 28811 CPn0478 CPn0479 hflX phnP TRUE 0.802 -12.000 0.008 1.000   NA
 28811 28812 CPn0479 CPn0480 phnP   FALSE 0.082 222.000 0.008 NA   NA
 28812 28813 CPn0480 CPn0481     TRUE 0.662 33.000 0.000 NA   NA
 28813 28814 CPn0481 CPn0482   artJ TRUE 0.868 12.000 0.000 NA   NA
 28815 28816 CPn0483 CPn0484   aroG TRUE 0.953 3.000 0.333 1.000   NA
 28816 28817 CPn0484 CPn0485 aroG   FALSE 0.066 211.000 0.000 NA   NA
 28818 28819 CPn0486 CPn0487     FALSE 0.030 325.000 0.000 1.000 N NA
 28819 28820 CPn0487 CPn0488   ycfF TRUE 0.834 24.000 0.005 1.000 N NA
 28820 28821 CPn0488 CPn0489 ycfF   TRUE 0.847 -3.000 0.011 NA   NA
 28825 28826 CPn0493 CPn0494     FALSE 0.147 139.000 0.000 NA   NA
 28827 28828 CPn0495 CPn0496 aspC   TRUE 0.889 -3.000 0.037 NA   NA
 28829 28830 CPn0497 CPn0498     TRUE 0.805 -7.000 0.010 NA   NA
 28830 28831 CPn0498 CPn0499     FALSE 0.368 167.000 0.667 NA   NA
 28832 28833 CPn0500 CPn0501 proS hrcA FALSE 0.261 92.000 0.007 1.000 N NA
 28833 28834 CPn0501 CPn0502 hrcA grpE TRUE 0.922 -3.000 0.286 1.000 N NA
 28834 28835 CPn0502 CPn0503 grpE dnaK TRUE 0.988 30.000 0.224 0.012 Y NA
 28835 28836 CPn0503 CPn0504 dnaK vacB FALSE 0.041 271.000 0.003 1.000 N NA
 28836 28837 CPn0504 CPn0505 vacB   TRUE 0.831 2.000 0.005 1.000 N NA
 28837 28838 CPn0505 CPn0506     TRUE 0.427 63.000 0.011 NA   NA
 28838 28839 CPn0506 CPn0507     FALSE 0.300 118.000 0.024 NA   NA
 28839 28840 CPn0507 CPn0508     TRUE 0.970 17.000 0.667 NA   NA
 28840 28841 CPn0508 CPn0509     TRUE 0.719 32.000 0.006 NA   NA
 28841 28842 CPn0509 CPn0510   tlyC_2 TRUE 0.935 2.000 0.222 NA   NA
 28842 28843 CPn0510 CPn0511 tlyC_2 rsbV_1 FALSE 0.169 165.000 0.011 NA   NA
 28843 28844 CPn0511 CPn0512 rsbV_1   TRUE 0.685 62.000 0.571 NA   NA
 28844 28845 CPn0512 CPn0513     FALSE 0.085 232.000 0.011 NA   NA
 28845 28846 CPn0513 CPn0514     TRUE 0.848 -27.000 0.205 NA   NA
 28846 28847 CPn0514 CPn0515   ubiE TRUE 0.680 -52.000 0.008 NA   NA
 28848 28849 CPn0516 CPn0517     TRUE 0.639 -22.000 0.000 NA   NA
 28849 28850 CPn0517 CPn0518     FALSE 0.073 198.000 0.000 NA   NA
 28850 28851 CPn0518 CPn0519   dapF FALSE 0.250 98.000 0.008 NA   NA
 28851 28852 CPn0519 CPn0520 dapF clpP_1 TRUE 0.658 -31.000 0.006 1.000 N NA
 28852 28853 CPn0520 CPn0521 clpP_1 glyA TRUE 0.940 20.000 0.051 1.000 N NA
 28854 28855 CPn0522 CPn0523     TRUE 0.600 65.000 0.273 NA   NA
 28855 28856 CPn0523 CPn0524     TRUE 0.830 48.000 0.750 NA   NA
 28856 28857 CPn0524 CPn0525     FALSE 0.026 340.000 0.000 NA   NA
 28857 2132655 CPn0525 CPns02     FALSE 0.363 56.000 0.000 NA   NA
 28858 28859 CPn0526 CPn0527 kpsF sucB_2 TRUE 0.955 27.000 0.857 1.000 N NA
 28859 28860 CPn0527 CPn0528 sucB_2 gltT TRUE 0.995 14.000 0.714 1.000 Y NA
 28860 28861 CPn0528 CPn0529 gltT ycaH TRUE 0.879 0.000 0.013 1.000 N NA
 28861 28862 CPn0529 CPn0530 ycaH spoU_1 FALSE 0.084 198.000 0.006 1.000 N NA
 28862 28863 CPn0530 CPn0531 spoU_1   TRUE 0.898 -12.000 0.213 1.000   NA
 28863 28864 CPn0531 CPn0532   ribC TRUE 0.880 3.000 0.006 1.000   NA
 28865 28866 CPn0533 CPn0534   dksA TRUE 0.838 25.000 0.009 NA N NA
 28866 28867 CPn0534 CPn0535 dksA lspA TRUE 0.935 6.000 0.038 1.000 N NA
 28867 28868 CPn0535 CPn0536 lspA dagA_1 TRUE 0.797 46.000 0.038 0.056 N NA
 28868 28869 CPn0536 CPn0537 dagA_1   FALSE 0.397 139.000 0.333 NA   NA
 28869 28870 CPn0537 CPn0538     TRUE 0.973 20.000 1.000 NA   NA
 28870 28871 CPn0538 CPn0539   pmp_19 FALSE 0.077 191.000 0.000 NA   NA
 28871 28872 CPn0539 CPn0540 pmp_19 pmp_20 TRUE 0.546 146.000 0.400 0.022   NA
 28873 28874 CPn0541 CPn0542     TRUE 0.989 -3.000 0.509 1.000 Y NA
 28874 28875 CPn0542 CPn0543     TRUE 0.983 -15.000 0.616 1.000 Y NA
 28876 28877 CPn0544 CPn0545 yhbZ rl27 TRUE 0.511 101.000 0.335 1.000   NA
 28877 28878 CPn0545 CPn0546 rl27 rl21 TRUE 0.994 25.000 0.667 0.041 Y NA
 28878 397275 CPn0546 CPnt16 rl21 tRNA-Phe FALSE 0.137 144.000 0.000 NA   NA
 28880 28881 CPn0548 CPn0549 cysJ rs10 TRUE 0.864 21.000 0.006 1.000 N NA
 28881 28882 CPn0549 CPn0550 rs10 fusA TRUE 0.986 8.000 0.007 1.000 Y NA
 28882 28883 CPn0550 CPn0551 fusA rs7 TRUE 0.957 34.000 0.008 1.000 Y NA
 28883 28884 CPn0551 CPn0552 rs7 rs12 TRUE 0.958 48.000 0.029 0.009 Y NA
 28884 28885 CPn0552 CPn0553 rs12   FALSE 0.058 222.000 0.000 NA   NA
 28886 28887 CPn0554 CPn0555   tsp FALSE 0.233 154.000 0.025 NA   NA
 28888 28889 CPn0556 CPn0557 crpA omcB FALSE 0.130 279.000 0.200 1.000   NA
 28889 28890 CPn0557 CPn0558 omcB omcA TRUE 0.537 167.000 0.600 0.002   NA
 28892 28893 CPn0560 CPn0561 gltX euo FALSE 0.058 256.000 0.000 1.000   NA
 28893 28894 CPn0561 CPn0562 euo   FALSE 0.017 511.000 0.000 NA   NA
 28894 28895 CPn0562 CPn0563   recJ FALSE 0.045 254.000 0.000 NA   NA
 28895 28896 CPn0563 CPn0564 recJ secD/secF FALSE 0.318 86.000 0.007 1.000   NA
 28896 28897 CPn0564 CPn0565 secD/secF   FALSE 0.084 180.000 0.000 NA   NA
 28898 28899 CPn0566 CPn0567 yaeS cdsA TRUE 0.990 1.000 0.400 1.000 Y NA
 28899 28900 CPn0567 CPn0568 cdsA cmk TRUE 0.830 -3.000 0.008 1.000 N NA
 28900 28901 CPn0568 CPn0569 cmk plsC TRUE 0.830 -3.000 0.008 1.000 N NA
 28901 28902 CPn0569 CPn0570 plsC argS TRUE 0.864 5.000 0.006 1.000 N NA
 28905 28906 CPn0573 CPn0574 yebC   TRUE 0.691 -13.000 0.003 NA   NA
 28906 28907 CPn0574 CPn0575   yhhY TRUE 0.876 34.000 0.200 1.000   NA
 28907 10729991 CPn0575 CPn0576.1 yhhY   TRUE 0.762 -3.000 0.000 NA   NA
 10729991 28908 CPn0576.1 CPn0575a   prfB TRUE 0.577 -1052.000 0.000 NA   NA
 28909 28910 CPn0577 CPn0578   yaeI FALSE 0.177 248.000 0.316 1.000   NA
 28910 28911 CPn0578 CPn0579 yaeI yacM TRUE 0.839 -7.000 0.010 1.000   NA
 28911 28912 CPn0579 CPn0580 yacM truA TRUE 0.819 -3.000 0.007 1.000 N NA
 28914 397253 CPn0582 CPnt17   tRNA-Leu FALSE 0.363 56.000 0.000 NA   NA
 397253 28915 CPnt17 CPn0583 tRNA-Leu   FALSE 0.218 82.000 0.000 NA   NA
 28915 28916 CPn0583 CPn0584   atoS TRUE 0.856 -13.000 0.057 NA   NA
 28918 397254 CPn0586 CPnt18 atoC tRNA-Arg FALSE 0.227 78.000 0.000 NA   NA
 397254 28919 CPnt18 CPn0587 tRNA-Arg yvyD FALSE 0.183 104.000 0.000 NA   NA
 28919 28920 CPn0587 CPn0588 yvyD   TRUE 0.610 -43.000 0.000 NA   NA
 28920 28921 CPn0588 CPn0589     TRUE 0.892 11.000 0.007 NA   NA
 28922 2132657 CPn0590 CPnt19     FALSE 0.289 66.000 0.000 NA   NA
 28923 28924 CPn0591 CPn0592 yagE yidD FALSE 0.198 130.000 0.007 NA   NA
 28926 28927 CPn0594 CPn0595 pheT   TRUE 0.798 -3.000 0.006 NA   NA
 28927 28928 CPn0595 CPn0596   ada TRUE 0.941 10.000 0.038 NA   NA
 28929 28930 CPn0597 CPn0598 oppC_2 oppB_2 TRUE 0.993 1.000 0.400 0.021 Y NA
 28930 28931 CPn0598 CPn0599 oppB_2 oppA_5 TRUE 0.986 -18.000 0.318 0.021 Y NA
 28931 28932 CPn0599 CPn0600 oppA_5   TRUE 0.831 22.000 0.000 NA   NA
 28932 28933 CPn0600 CPn0601     FALSE 0.016 586.000 0.000 NA   NA
 28933 28934 CPn0601 CPn0602     TRUE 0.467 48.000 0.000 NA   NA
 28936 28937 CPn0604 CPn0605 fliY yhhF FALSE 0.079 202.000 0.005 1.000 N NA
 28937 28938 CPn0605 CPn0606 yhhF   TRUE 0.851 -3.000 0.008 1.000   NA
 28938 28939 CPn0606 CPn0607   glgC FALSE 0.390 126.000 0.070 1.000   NA
 28939 28940 CPn0607 CPn0608 glgC   FALSE 0.268 118.000 0.012 1.000 N NA
 28942 28943 CPn0610 CPn0611 rho yacE TRUE 0.858 -3.000 0.013 1.000 N NA
 28943 28944 CPn0611 CPn0612 yacE polA TRUE 0.889 -6.000 0.068 1.000 N NA
 28944 28945 CPn0612 CPn0613 polA sohB TRUE 0.844 24.000 0.006 1.000 N NA
 28945 28946 CPn0613 CPn0614 sohB adt_2 FALSE 0.246 124.000 0.011 1.000 N NA
 28946 28947 CPn0614 CPn0615 adt_2 pgsA_1 FALSE 0.100 229.000 0.000 0.046 N NA
 28947 2132658 CPn0615 CPnt20 pgsA_1   FALSE 0.062 217.000 0.000 NA   NA
 28948 28949 CPn0616 CPn0617 dnaB gidA FALSE 0.027 344.000 0.000 1.000 N NA
 28949 28950 CPn0617 CPn0618 gidA lplA_2 TRUE 0.755 -13.000 0.008 1.000 N NA
 28951 28952 CPn0619 CPn0620 ndk ruvA FALSE 0.298 72.000 0.006 1.000 N NA
 28952 28953 CPn0620 CPn0621 ruvA ruvC TRUE 0.994 2.000 0.451 0.013 Y NA
 28953 28954 CPn0621 CPn0622 ruvC   FALSE 0.140 143.000 0.000 NA   NA
 28954 397272 CPn0622 CPnt21   tRNA-Leu FALSE 0.150 137.000 0.000 NA   NA
 397272 28955 CPnt21 CPn0623 tRNA-Leu   FALSE 0.078 189.000 0.000 NA   NA
 28955 28956 CPn0623 CPn0624   gapA TRUE 0.955 15.000 0.128 NA   NA
 28956 28957 CPn0624 CPn0625 gapA rl17 TRUE 0.609 42.000 0.006 1.000 N NA
 28957 28958 CPn0625 CPn0626 rl17 rpoA TRUE 0.974 7.000 0.873 1.000 N NA
 28958 28959 CPn0626 CPn0627 rpoA rs11 TRUE 0.953 21.000 0.308 1.000 N NA
 28959 28960 CPn0627 CPn0628 rs11 rs13 TRUE 0.996 22.000 0.810 0.040 Y NA
 28960 28961 CPn0628 CPn0629 rs13 secY TRUE 0.510 56.000 0.011 1.000 N NA
 28961 28962 CPn0629 CPn0630 secY rl15 TRUE 0.957 25.000 0.730 1.000 N NA
 28962 28963 CPn0630 CPn0631 rl15 rs5 TRUE 0.986 -7.000 0.148 0.055 Y NA
 28963 28964 CPn0631 CPn0632 rs5 rl18 TRUE 0.996 18.000 0.814 0.055 Y NA
 28964 28965 CPn0632 CPn0633 rl18 rl6 TRUE 0.997 11.000 0.815 0.040 Y NA
 28965 28966 CPn0633 CPn0634 rl6 rs8 TRUE 0.994 27.000 0.808 0.040 Y NA
 28966 28967 CPn0634 CPn0635 rs8 rl5 TRUE 0.994 18.000 0.059 0.040 Y NA
 28967 28968 CPn0635 CPn0636 rl5 rl24 TRUE 0.995 2.000 0.758 0.040 Y NA
 28968 28969 CPn0636 CPn0637 rl24 rl14 TRUE 0.997 14.000 0.810 0.055 Y NA
 28969 28970 CPn0637 CPn0638 rl14 rs17 TRUE 0.995 23.000 0.791 0.055 Y NA
 28970 28971 CPn0638 CPn0639 rs17 rl29 TRUE 0.992 -7.000 0.828 0.040 Y NA
 28971 28972 CPn0639 CPn0640 rl29 rl16 TRUE 0.995 3.000 0.802 0.040 Y NA
 28972 28973 CPn0640 CPn0641 rl16 rs3 TRUE 0.992 29.000 0.828 0.055 Y NA
 28973 28974 CPn0641 CPn0642 rs3 rl22 TRUE 0.996 16.000 0.719 0.055 Y NA
 28974 28975 CPn0642 CPn0643 rl22 rs19 TRUE 0.996 19.000 0.769 0.055 Y NA
 28975 28976 CPn0643 CPn0644 rs19 rl2 TRUE 0.996 6.000 0.820 0.055 Y NA
 28976 28977 CPn0644 CPn0645 rl2 rl23 TRUE 0.996 22.000 0.849 0.037 Y NA
 28977 28978 CPn0645 CPn0646 rl23 rl4 TRUE 0.992 17.000 0.013 0.040 Y NA
 28978 28979 CPn0646 CPn0647 rl4 rplC TRUE 0.977 33.000 0.020 0.040 Y NA
 28979 28980 CPn0647 CPn0648 rplC   FALSE 0.033 289.000 0.000 NA   NA
 28980 28981 CPn0648 CPn0649   fmt FALSE 0.204 104.000 0.006 NA   NA
 28981 28982 CPn0649 CPn0650 fmt lpxA TRUE 0.758 -10.000 0.007 1.000 N NA
 28982 28983 CPn0650 CPn0651 lpxA fabZ TRUE 0.949 13.000 0.048 1.000 N NA
 28983 28984 CPn0651 CPn0652 fabZ lpxC TRUE 0.924 12.000 0.012 1.000 N NA
 28984 28985 CPn0652 CPn0653 lpxC cutE TRUE 0.972 30.000 0.012 1.000 Y NA
 28985 28986 CPn0653 CPn0654 cutE yciA TRUE 0.940 10.000 0.072 NA N NA
 28986 28987 CPn0654 CPn0655 yciA dnaQ_2 FALSE 0.308 131.000 0.072 NA N NA
 28989 28990 CPn0657 CPn0658 yjeE   TRUE 0.748 -21.000 0.010 NA   NA
 397255 28991 CPnt22 CPn0659 tRNA-Leu trxA TRUE 0.485 47.000 0.000 NA   NA
 28992 28993 CPn0660 CPn0661 spoU_2 mip TRUE 0.853 -3.000 0.011 1.000 N NA
 28993 28994 CPn0661 CPn0662 mip aspS FALSE 0.316 69.000 0.006 1.000 N NA
 28994 28995 CPn0662 CPn0663 aspS hisS TRUE 0.968 -25.000 0.009 0.053 Y NA
 28995 28996 CPn0663 CPn0664 hisS   FALSE 0.023 364.000 0.000 NA   NA
 28997 28998 CPn0665 CPn0666 uhpC dnaE TRUE 0.884 20.000 0.007 1.000 N NA
 29000 29001 CPn0668 CPn0669     TRUE 0.974 14.000 0.750 NA   NA
 29001 29002 CPn0669 CPn0670   rsbW TRUE 0.930 -13.000 0.875 NA   NA
 29004 29005 CPn0672 CPn0673 dacF   FALSE 0.184 236.000 0.455 NA   NA
 29006 29007 CPn0674 CPn0675 fmu   FALSE 0.299 97.000 0.012 NA   NA
 29007 29008 CPn0675 CPn0676     TRUE 0.546 129.000 1.000 NA   NA
 29008 29009 CPn0676 CPn0677     TRUE 0.875 36.000 0.500 NA   NA
 29009 29010 CPn0677 CPn0678     FALSE 0.037 278.000 0.000 NA   NA
 29010 29011 CPn0678 CPn0679   pgk FALSE 0.020 402.000 0.000 NA   NA
 29011 29012 CPn0679 CPn0680 pgk ygo4 TRUE 0.675 38.000 0.005 1.000   NA
 29012 29013 CPn0680 CPn0681 ygo4   TRUE 0.974 7.000 0.937 NA   NA
 29014 29015 CPn0682 CPn0683 dppD dppF_2 TRUE 0.989 -10.000 0.250 0.002 Y NA
 29019 29020 CPn0687 CPn0688     FALSE 0.387 165.000 0.714 NA   NA
 29021 29022 CPn0689 CPn0690 yfhO_1   TRUE 0.905 29.000 0.193 1.000 N NA
 29022 29023 CPn0690 CPn0691   abcX TRUE 0.991 2.000 0.482 1.000 Y NA
 29023 29024 CPn0691 CPn0692 abcX   TRUE 0.993 6.000 0.466 1.000 Y NA
 29024 29025 CPn0692 CPn0693     FALSE 0.037 325.000 0.000 1.000   NA
 29025 29026 CPn0693 CPn0694   pbp2 TRUE 0.634 71.000 0.400 1.000   NA
 29027 397256 CPn0695 CPnt23 ompA tRNA-Gly FALSE 0.056 225.000 0.000 NA   NA
 397256 29028 CPnt23 CPn0696 tRNA-Gly rs2 FALSE 0.201 89.000 0.000 NA   NA
 29028 29029 CPn0696 CPn0697 rs2 tsf TRUE 0.992 0.000 0.748 1.000 Y NA
 29029 29030 CPn0697 CPn0698 tsf pyrH TRUE 0.962 8.000 0.416 1.000 N NA
 29030 29031 CPn0698 CPn0699 pyrH rrf TRUE 0.900 -22.000 0.626 1.000 N NA
 29031 397257 CPn0699 CPnt24 rrf tRNA-Glu FALSE 0.190 98.000 0.000 NA   NA
 397257 397258 CPnt24 CPnt25 tRNA-Glu tRNA-Lys TRUE 0.787 26.000 0.000 NA   NA
 397258 29032 CPnt25 CPn0700 tRNA-Lys   FALSE 0.184 103.000 0.000 NA   NA
 29032 29033 CPn0700 CPn0701   karG TRUE 0.936 -13.000 0.848 1.000   NA
 397271 29034 CPnt26 CPn0702 tRNA-Thr yscC FALSE 0.134 146.000 0.000 NA   NA
 29034 29035 CPn0702 CPn0703 yscC   TRUE 0.917 -3.000 0.208 1.000 N NA
 29035 29036 CPn0703 CPn0704   fliN TRUE 0.971 16.000 0.583 1.000 N NA
 29036 29037 CPn0704 CPn0705 fliN   TRUE 0.968 10.000 0.600 NA   NA
 29037 29038 CPn0705 CPn0706     TRUE 0.964 4.000 0.750 NA   NA
 29038 29039 CPn0706 CPn0707   yscN TRUE 0.974 18.000 0.875 NA   NA
 29039 29040 CPn0707 CPn0708 yscN   TRUE 0.963 2.000 0.857 NA   NA
 29040 29041 CPn0708 CPn0709     TRUE 0.643 34.000 0.000 NA   NA
 29041 29042 CPn0709 CPn0710     TRUE 0.852 19.000 0.000 NA   NA
 29042 29043 CPn0710 CPn0711     TRUE 0.968 22.000 0.857 NA   NA
 29043 29044 CPn0711 CPn0712     TRUE 0.751 47.000 0.171 NA   NA
 29044 29045 CPn0712 CPn0713     TRUE 0.956 14.000 0.146 NA   NA
 29045 29046 CPn0713 CPn0714   hemA FALSE 0.029 367.000 0.000 1.000   NA
 29047 29048 CPn0715 CPn0716 gyrB_2 gyrA_2 TRUE 0.994 4.000 0.110 0.004 Y NA
 29048 29049 CPn0716 CPn0717 gyrA_2   FALSE 0.229 105.000 0.007 NA   NA
 29049 29050 CPn0717 CPn0718     TRUE 0.962 0.000 1.000 NA   NA
 29050 29051 CPn0718 CPn0719   sfhB FALSE 0.035 287.000 0.002 NA   NA
 29051 29052 CPn0719 CPn0720 sfhB   FALSE 0.349 110.000 0.004 0.036   NA
 29053 29054 CPn0721 CPn0722 kdsA   TRUE 0.843 -3.000 0.011 NA   NA
 29054 29055 CPn0722 CPn0723   yhbG TRUE 0.900 7.000 0.009 NA   NA
 29056 29057 CPn0724 CPn0725     FALSE 0.349 57.000 0.000 NA   NA
 29057 29058 CPn0725 CPn0726     TRUE 0.644 66.000 0.500 NA   NA
 29060 29061 CPn0728 CPn0729     TRUE 0.548 112.000 0.833 NA   NA
 29061 29062 CPn0729 CPn0730   mviN FALSE 0.246 103.000 0.008 NA   NA
 29063 29064 CPn0731 CPn0732   nfo FALSE 0.027 335.000 0.000 NA   NA
 29067 29068 CPn0735 CPn0736   ygeD FALSE 0.031 321.000 0.000 1.000 N NA
 29069 29070 CPn0737 CPn0738 recC recB TRUE 0.990 -13.000 0.542 0.004 Y NA
 29071 29072 CPn0739 CPn0740   tyrB TRUE 0.726 -10.000 0.005 1.000 N NA
 29074 29075 CPn0742 CPn0743   nqrA TRUE 0.519 71.000 0.086 NA   NA
 29076 29077 CPn0744 CPn0745 hemB   FALSE 0.024 355.000 0.000 NA   NA
 29078 10729992 CPn0746 CPn0747     FALSE 0.181 105.000 0.000 NA   NA
 10729992 397260 CPn0747 CPnt29   tRNA-Pro FALSE 0.082 183.000 0.000 NA   NA
 29079 29080 CPn0748 CPn0749 ispA glmU TRUE 0.898 16.000 0.000 1.000   NA
 29080 29081 CPn0749 CPn0750 glmU tctD FALSE 0.293 75.000 0.000 1.000   NA
 29082 29083 CPn0751 CPn0752   recD_2 FALSE 0.229 167.000 0.023 1.000   NA
 29084 29085 CPn0753 CPn0754   rs20 TRUE 0.713 31.000 0.004 NA   NA
 29086 29087 CPn0755 CPn0756   rpoD TRUE 0.435 159.000 0.857 NA   NA
 29087 29088 CPn0756 CPn0757 rpoD folX TRUE 0.614 54.000 0.030 1.000 N NA
 29088 29089 CPn0757 CPn0758 folX folP TRUE 0.965 -27.000 0.030 1.000 Y NA
 29089 29090 CPn0758 CPn0759 folP folA TRUE 0.982 26.000 0.015 1.000 Y NA
 29090 29091 CPn0759 CPn0760 folA   TRUE 0.758 -43.000 0.017 NA   NA
 29091 29092 CPn0760 CPn0761     TRUE 0.942 7.000 0.055 NA   NA
 29093 29094 CPn0762 CPn0763 recA ygfA FALSE 0.022 372.000 0.000 1.000 N NA
 29094 29095 CPn0763 CPn0764 ygfA   TRUE 0.881 10.000 0.006 NA   NA
 29095 29096 CPn0764 CPn0765     TRUE 0.911 -9.000 0.429 NA   NA
 29096 29097 CPn0765 CPn0766     TRUE 0.976 9.000 1.000 NA   NA
 29098 29099 CPn0767 CPn0768   yohI TRUE 0.726 -21.000 0.005 1.000   NA
 29102 29103 CPn0771 CPn0772 rpoN uvrD TRUE 0.900 3.000 0.015 1.000 N NA
 29104 29105 CPn0773 CPn0774 ung   TRUE 0.910 -3.000 0.140 NA   NA
 29107 29108 CPn0776 CPn0777   groEL_2 FALSE 0.390 111.000 0.128 NA   NA
 29108 397261 CPn0777 CPnt30 groEL_2 tRNA-Arg FALSE 0.060 219.000 0.000 NA   NA
 397261 29109 CPnt30 CPn0778 tRNA-Arg ahpC TRUE 0.679 32.000 0.000 NA   NA
 29110 29111 CPn0779 CPn0780   amiB TRUE 0.549 107.000 0.750 NA   NA
 29111 29112 CPn0780 CPn0781 amiB pal TRUE 0.938 -10.000 0.750 1.000   NA
 29112 29113 CPn0781 CPn0782 pal tolB TRUE 0.948 -3.000 0.750 1.000 N NA
 29113 29114 CPn0782 CPn0783 tolB   TRUE 0.922 32.000 0.750 NA   NA
 29114 29115 CPn0783 CPn0784   exbD TRUE 0.956 4.000 0.500 NA   NA
 29115 29116 CPn0784 CPn0785 exbD exbB TRUE 0.992 -3.000 0.583 0.031 Y NA
 29117 29118 CPn0786 CPn0787 dsbD yabD FALSE 0.033 323.000 0.008 NA N NA
 29118 29119 CPn0787 CPn0788 yabD sdhC FALSE 0.152 138.000 0.007 NA N NA
 29119 29120 CPn0788 CPn0789 sdhC sdhA TRUE 0.994 4.000 0.179 0.003 Y NA
 29120 29121 CPn0789 CPn0790 sdhA sdhB TRUE 0.996 11.000 0.231 0.003 Y NA
 29122 29123 CPn0791 CPn0792     TRUE 0.722 55.000 0.429 NA   NA
 29123 29124 CPn0792 CPn0793   rbsU TRUE 0.954 -3.000 0.750 1.000   NA
 29125 29126 CPn0794 CPn0795     FALSE 0.159 121.000 0.000 NA   NA
 29126 29127 CPn0795 CPn0796     FALSE 0.184 103.000 0.000 NA   NA
 29127 29128 CPn0796 CPn0797     FALSE 0.044 257.000 0.000 NA   NA
 29128 29129 CPn0797 CPn0798     FALSE 0.129 149.000 0.000 NA   NA
 29130 29131 CPn0799 CPn0800   eno FALSE 0.042 260.000 0.000 NA   NA
 29131 29132 CPn0800 CPn0801 eno uvrB FALSE 0.092 192.000 0.006 1.000 N NA
 29132 29133 CPn0801 CPn0802 uvrB trpS TRUE 0.929 9.000 0.006 0.049 N NA
 29133 29134 CPn0802 CPn0803 trpS   TRUE 0.940 9.000 0.039 NA   NA
 29134 29135 CPn0803 CPn0804   gp6D TRUE 0.964 4.000 0.750 NA   NA
 29135 29136 CPn0804 CPn0805 gp6D minD TRUE 0.970 5.000 0.875 NA   NA
 29136 29137 CPn0805 CPn0806 minD thrS TRUE 0.833 33.000 0.035 1.000 N NA
 29139 29140 CPn0808 CPn0809     TRUE 0.986 17.000 0.750 0.007   NA
 29140 29141 CPn0809 CPn0810     TRUE 0.901 37.000 0.857 NA   NA
 29141 29142 CPn0810 CPn0811   lcrH_1 TRUE 0.840 21.000 0.000 NA   NA
 29143 29144 CPn0812 CPn0813 mutL pepP TRUE 0.883 5.000 0.007 1.000 N NA
 29144 29145 CPn0813 CPn0814 pepP   FALSE 0.169 170.000 0.014 NA   NA
 29145 29146 CPn0814 CPn0815   gspD TRUE 0.945 1.000 0.467 NA   NA
 29146 29147 CPn0815 CPn0816 gspD gspE TRUE 0.984 -10.000 0.467 1.000 Y NA
 29147 29148 CPn0816 CPn0817 gspE gspF TRUE 0.991 10.000 0.035 1.000 Y NA
 29148 29149 CPn0817 CPn0818 gspF   TRUE 0.911 24.000 0.030 NA   NA
 29149 29150 CPn0818 CPn0819     TRUE 0.962 4.000 0.667 NA   NA
 29150 29151 CPn0819 CPn0820     TRUE 0.913 -15.000 0.667 NA   NA
 29151 29152 CPn0820 CPn0821     TRUE 0.964 5.000 0.667 NA   NA
 29152 29153 CPn0821 CPn0822     TRUE 0.643 85.000 1.000 NA   NA
 29154 29155 CPn0823 CPn0824 yscT yscS TRUE 0.995 8.000 0.875 1.000 Y NA
 29155 29156 CPn0824 CPn0825 yscS yscR TRUE 0.997 12.000 0.700 0.011 Y NA
 29156 29157 CPn0825 CPn0826 yscR yscL TRUE 0.995 15.000 0.700 1.000 Y NA
 29157 29158 CPn0826 CPn0827 yscL   TRUE 0.468 121.000 0.556 NA   NA
 29158 29159 CPn0827 CPn0828   yscJ TRUE 0.960 0.000 0.875 NA   NA
 29160 29161 CPn0829 CPn0830     FALSE 0.140 143.000 0.000 NA   NA
 29161 29162 CPn0830 CPn0831     FALSE 0.030 305.000 0.000 NA   NA
 29163 29164 CPn0832 CPn0833 lipA lpdA TRUE 0.836 -3.000 0.009 1.000 N NA
 29166 29167 CPn0835 CPn0836   brnQ TRUE 0.923 30.000 0.545 1.000 N NA
 29167 29168 CPn0836 CPn0837 brnQ nth FALSE 0.045 263.000 0.004 1.000 N NA
 29168 29169 CPn0837 CPn0838 nth thdF TRUE 0.911 7.000 0.007 1.000   NA
 29170 29171 CPn0839 CPn0840 psdD   FALSE 0.398 60.000 0.000 1.000   NA
 29171 29172 CPn0840 CPn0841   secA_2 FALSE 0.104 184.000 0.000 1.000   NA
 10729993 29175 CPn0842 CPn0844   yphC FALSE 0.021 384.000 0.000 NA   NA
 29175 29176 CPn0844 CPn0845 yphC pcnB_1 FALSE 0.233 117.000 0.006 1.000   NA
 29176 29177 CPn0845 CPn0846 pcnB_1 clpX TRUE 0.756 30.000 0.006 1.000 N NA
 29177 29178 CPn0846 CPn0847 clpX clpP_2 TRUE 0.993 10.000 0.352 1.000 Y NA
 29178 29179 CPn0847 CPn0848 clpP_2 tigA TRUE 0.694 179.000 0.351 1.000 Y NA
 29179 397269 CPn0848 CPnt31 tigA tRNA-Gly TRUE 0.643 34.000 0.000 NA   NA
 29180 29181 CPn0849 CPn0850   mreB TRUE 0.896 5.000 0.009 1.000 N NA
 29181 29182 CPn0850 CPn0851 mreB pckA TRUE 0.890 3.000 0.011 1.000 N NA
 29182 29183 CPn0851 CPn0852 pckA   FALSE 0.303 118.000 0.026 NA   NA
 29183 29184 CPn0852 CPn0853     TRUE 0.972 21.000 1.000 NA   NA
 29185 29186 CPn0854 CPn0855 porB gpdA FALSE 0.353 154.000 0.375 NA   NA
 29186 29187 CPn0855 CPn0856 gpdA   TRUE 0.897 -3.000 0.044 1.000 N NA
 29187 29188 CPn0856 CPn0857     TRUE 0.946 12.000 0.044 NA   NA
 29188 29189 CPn0857 CPn0858   fliI TRUE 0.906 -3.000 0.108 NA   NA
 29189 29190 CPn0858 CPn0859 fliI   TRUE 0.904 -3.000 0.081 NA   NA
 29190 29191 CPn0859 CPn0860   fliF TRUE 0.966 17.000 0.500 NA   NA
 29191 29192 CPn0860 CPn0861 fliF   FALSE 0.083 292.000 0.136 NA N NA
 29192 29193 CPn0861 CPn0862   yfhO_2 TRUE 0.912 -3.000 0.138 1.000 N NA
 29193 29194 CPn0862 CPn0863 yfhO_2 pgmA TRUE 0.770 -45.000 0.021 1.000 N NA
 29195 29196 CPn0864 CPn0865 yjbC   TRUE 0.801 41.000 0.080 NA   NA
 29199 29200 CPn0868 CPn0869 zntA   TRUE 0.956 12.000 0.052 1.000   NA
 29200 29201 CPn0869 CPn0870   serS TRUE 0.831 44.000 0.286 1.000   NA
 29202 29203 CPn0871 CPn0872 ribD ribA/ribB TRUE 0.905 61.000 0.007 0.004 Y NA
 29203 29204 CPn0872 CPn0873 ribA/ribB ribE TRUE 0.992 14.000 0.006 0.004 Y NA
 29206 29207 CPn0875 CPn0876   dagA_2 FALSE 0.419 119.000 0.316 NA   NA
 29207 29208 CPn0876 CPn0877 dagA_2 ybcL TRUE 0.962 13.000 0.316 NA   NA
 29209 29210 CPn0878 CPn0879   yycJ TRUE 0.841 -12.000 0.016 1.000   NA
 29210 29211 CPn0879 CPn0880 yycJ ftsK TRUE 0.910 2.000 0.016 1.000   NA
 29211 2132659 CPn0880 CPnt32 ftsK   FALSE 0.204 88.000 0.000 NA   NA
 2132660 407052 CPnr01 CPnr02   rrl FALSE 0.031 300.000 0.000 NA   NA
 407052 2132661 CPnr02 CPnr03 rrl   FALSE 0.167 115.000 0.000 NA   NA
 2132661 29212 CPnr03 CPn0881     FALSE 0.113 158.000 0.000 NA   NA
 29212 29213 CPn0881 CPn0882     FALSE 0.363 56.000 0.000 NA   NA
 29214 29215 CPn0883 CPn0884 nqr6   FALSE 0.151 141.000 0.007 NA N NA
 29215 29216 CPn0884 CPn0885   ygcA FALSE 0.279 71.000 0.007 NA N NA
 29216 29217 CPn0885 CPn0886 ygcA hctA FALSE 0.115 270.000 0.048 1.000   NA
 29219 29220 CPn0888 CPn0889 hemG hemN_2 TRUE 0.980 36.000 0.056 0.004 Y NA
 29220 29221 CPn0889 CPn0890 hemN_2 hemE TRUE 0.978 -19.000 0.012 0.004 Y NA
 29221 29222 CPn0890 CPn0891 hemE mfd TRUE 0.894 11.000 0.006 1.000 N NA
 29222 29223 CPn0891 CPn0892 mfd alaS TRUE 0.675 -30.000 0.006 1.000 N NA
 29226 29227 CPn0895 CPn0896 efp_2   TRUE 0.654 35.000 0.006 NA   NA
 29228 29229 CPn0897 CPn0898   groEL_3 FALSE 0.248 164.000 0.027 1.000   NA
 29229 397267 CPn0898 CPnt33 groEL_3 tRNA-Cys FALSE 0.247 73.000 0.000 NA   NA
 29230 29231 CPn0899 CPn0900 murF mraY TRUE 0.994 17.000 0.018 0.007 Y NA
 29231 29232 CPn0900 CPn0901 mraY murD TRUE 0.995 3.000 0.647 0.007 Y NA
 29232 29233 CPn0901 CPn0902 murD nlpD TRUE 0.981 3.000 0.006 1.000 Y NA
 29233 29234 CPn0902 CPn0903 nlpD ftsW TRUE 0.946 19.000 0.088 1.000 N NA
 29234 29235 CPn0903 CPn0904 ftsW murG TRUE 0.784 -94.000 0.037 1.000 N NA
 29235 29236 CPn0904 CPn0905 murG murC/ddlA TRUE 0.993 10.000 0.270 1.000 Y NA
 29237 29238 CPn0906 CPn0907   cutA FALSE 0.306 102.000 0.009 1.000   NA
 29238 29239 CPn0907 CPn0908 cutA   TRUE 0.837 -3.000 0.010 NA   NA
 29240 29241 CPn0909 CPn0910 rsbV_2 miaA TRUE 0.943 10.000 0.040 1.000 N NA
 29243 29244 CPn0912 CPn0913     TRUE 0.762 -3.000 0.000 NA   NA
 29244 29245 CPn0913 CPn0914     TRUE 0.425 51.000 0.000 NA   NA
 29245 29246 CPn0914 CPn0915   ybeB FALSE 0.323 61.000 0.000 NA   NA
 29246 29247 CPn0915 CPn0916 ybeB fabF TRUE 0.900 17.000 0.008 NA   NA
 29247 29248 CPn0916 CPn0917 fabF   TRUE 0.947 3.000 0.333 1.000 N NA
 29252 29253 CPn0921 CPn0922   aas TRUE 0.993 18.000 0.032 0.034 Y NA
 29253 29254 CPn0922 CPn0923 aas bioF_1 TRUE 0.618 54.000 0.032 1.000 N NA
 29255 29256 CPn0924 CPn0925 priA   TRUE 0.664 -51.000 0.007 NA   NA
 29258 29259 CPn0927 CPn0928     FALSE 0.255 72.000 0.000 NA   NA
 29259 29260 CPn0928 CPn0929     FALSE 0.091 175.000 0.000 NA   NA
 29261 29262 CPn0930 CPn0931   lysS FALSE 0.015 805.000 0.000 NA   NA
 29265 29266 CPn0934 CPn0935 rnpA rl34 TRUE 0.978 12.000 0.787 1.000   NA
 29267 29268 CPn0936 CPn0937 rl36 rs14 TRUE 0.947 23.000 0.013 0.036   NA
 29271 29272 CPn0940 CPn0941 uvrC mutS TRUE 0.980 3.000 0.006 1.000 Y NA
 29273 29274 CPn0942 CPn0943 dnaG   FALSE 0.237 221.000 0.625 NA   NA
 29274 29275 CPn0943 CPn0944     FALSE 0.149 271.000 0.500 NA   NA
 29275 29276 CPn0944 CPn0945     TRUE 0.593 70.000 0.333 NA   NA
 397262 29280 CPnt34 CPn0949 tRNA-Gln ctc FALSE 0.046 253.000 0.000 NA   NA
 29280 29281 CPn0949 CPn0950 ctc pth TRUE 0.993 2.000 0.496 0.056 Y NA
 29281 29282 CPn0950 CPn0951 pth rs6 TRUE 0.844 92.000 0.029 0.056 Y NA
 29282 29283 CPn0951 CPn0952 rs6 rs18 TRUE 0.995 18.000 0.319 0.036 Y NA
 29283 29284 CPn0952 CPn0953 rs18 rl9 TRUE 0.996 16.000 0.499 0.036 Y NA
 29284 10729994 CPn0953 CPn0954 rl9   TRUE 0.624 35.000 0.000 NA   NA
 10729994 29285 CPn0954 CPn0956     FALSE 0.015 849.000 0.000 NA   NA
 29286 29287 CPn0957 CPn0958 ide plsB TRUE 0.848 2.000 0.000 1.000   NA
 29287 29288 CPn0958 CPn0959 plsB cafE TRUE 0.942 11.000 0.019 1.000   NA
 29289 29290 CPn0960 CPn0961   rl32 TRUE 0.880 13.000 0.005 NA   NA
 29290 29291 CPn0961 CPn0962 rl32 plsX TRUE 0.966 16.000 0.418 1.000 N NA
 29291 29292 CPn0962 CPn0963 plsX pmp_21 FALSE 0.215 120.000 0.005 1.000   NA
 29293 29294 CPn0964 CPn0965   lpxB FALSE 0.137 164.000 0.000 1.000   NA
 29294 29295 CPn0965 CPn0966 lpxB pcnB_2 TRUE 0.912 9.000 0.010 1.000 N NA
 29296 29297 CPn0967 CPn0968 pgm glmS TRUE 0.933 7.000 0.030 1.000 N NA
 29297 29298 CPn0968 CPn0969 glmS tyrP_1 FALSE 0.246 88.000 0.006 1.000 N NA
 29298 29299 CPn0969 CPn0969.1 tyrP_1 yccA_1 TRUE 0.425 51.000 0.000 NA   NA
 29299 29300 CPn0969.1 CPn0970 yccA_1 tyrP_2 FALSE 0.204 88.000 0.000 NA   NA
 29300 29301 CPn0970 CPn0971 tyrP_2 yccA_2 TRUE 0.767 51.000 0.500 NA   NA
 29303 29304 CPn0973 CPn0974 sucC sucD TRUE 0.997 14.000 0.467 0.002 Y NA
 29304 29305 CPn0974 CPn0975 sucD   FALSE 0.016 679.000 0.000 NA   NA
 29305 29306 CPn0975 CPn0976     FALSE 0.018 442.000 0.000 NA   NA
 29306 29307 CPn0976 CPn0977     FALSE 0.082 183.000 0.000 NA   NA
 29307 29308 CPn0977 CPn0978     FALSE 0.042 260.000 0.000 NA   NA
 29308 29309 CPn0978 CPn0979   htrA FALSE 0.035 284.000 0.000 NA   NA
 29312 29313 CPn0982 CPn0983 yigN pssA TRUE 0.913 9.000 0.011 NA   NA
 29314 29315 CPn0984 CPn0985 nrdA nrdB TRUE 0.996 21.000 0.564 0.002 Y NA
 29315 29316 CPn0985 CPn0986 nrdB yggH FALSE 0.207 150.000 0.008 1.000   NA
 29318 29319 CPn0988 CPn0989 murB   TRUE 0.837 27.000 0.008 1.000 N NA
 29320 29321 CPn0990 CPn0991 infC rl35 TRUE 0.981 -22.000 0.652 1.000 Y NA
 29321 29322 CPn0991 CPn0992 rl35 rl20 TRUE 0.997 19.000 0.928 0.035 Y NA
 29322 29323 CPn0992 CPn0993 rl20 pheS TRUE 0.993 15.000 0.202 1.000 Y NA
 29323 2132662 CPn0993 CPnt36 pheS   TRUE 0.800 1.000 0.000 NA   NA
 2132662 29324 CPnt36 CPn0994     FALSE 0.036 281.000 0.000 NA   NA
 29325 29326 CPn0995 CPn0996     TRUE 0.977 4.000 0.631 0.040   NA
 29327 29328 CPn0997 CPn0998 mesJ ftsH FALSE 0.220 188.000 0.145 1.000 N NA
 29329 29330 CPn0999 CPn1000 pnp rs15 TRUE 0.971 41.000 0.335 1.000 Y NA
 29331 29332 CPn1001 CPn1002 yfhC   TRUE 0.809 -10.000 0.013 NA   NA
 29333 29334 CPn1003 CPn1004     TRUE 0.653 80.000 1.000 NA   NA
 29334 29335 CPn1004 CPn1005     TRUE 0.978 15.000 1.000 NA   NA
 29335 29336 CPn1005 CPn1006     TRUE 0.813 54.000 1.000 NA   NA
 29337 29338 CPn1007 CPn1008     TRUE 0.966 18.000 0.571 NA   NA
 29339 29340 CPn1009 CPn1010 map   TRUE 0.953 6.000 0.429 NA N NA
 29340 29341 CPn1010 CPn1011     TRUE 0.480 227.000 0.042 NA Y NA
 29341 29342 CPn1011 CPn1012   yzeB FALSE 0.263 112.000 0.020 NA N NA
 29345 29346 CPn1015 CPn1016     FALSE 0.385 146.000 0.400 NA   NA
 29346 29347 CPn1016 CPn1017   lytB TRUE 0.513 105.000 0.400 1.000   NA
 29347 29348 CPn1017 CPn1018 lytB   TRUE 0.614 -40.000 0.000 NA   NA
 29349 29350 CPn1019 CPn1020     TRUE 0.974 19.000 1.000 NA   NA
 29350 29351 CPn1020 CPn1021   lcrH_2 TRUE 0.870 16.000 0.000 NA   NA
 29351 29352 CPn1021 CPn1022 lcrH_2   TRUE 0.792 0.000 0.000 NA   NA
 397264 29353 CPnt37 CPn1023 tRNA-Leu   FALSE 0.200 91.000 0.000 NA   NA
 29355 29356 CPn1025 CPn1026 pgi   FALSE 0.383 115.000 0.133 NA   NA
 29356 29357 CPn1026 CPn1027     TRUE 0.624 35.000 0.000 NA   NA
 29357 29358 CPn1027 CPn1028   mdhC FALSE 0.043 258.000 0.000 NA   NA
 29358 29359 CPn1028 CPn1029 mdhC   TRUE 0.918 6.000 0.018 NA   NA
 29360 29361 CPn1030 CPn1031   arcD TRUE 0.495 209.000 0.011 1.000 Y NA
 29361 29362 CPn1031 CPn1032 arcD   TRUE 0.969 11.000 0.429 1.000   NA
 29362 29363 CPn1032 CPn1033     TRUE 0.899 34.000 0.429 1.000   NA
 29363 29364 CPn1033 CPn1034     FALSE 0.173 229.000 0.300 NA   NA
 29364 29365 CPn1034 CPn1035   aroE TRUE 0.729 50.000 0.214 NA   NA
 29365 29366 CPn1035 CPn1036 aroE aroB TRUE 0.974 -19.000 0.007 0.004 Y NA
 29366 29367 CPn1036 CPn1037 aroB aroC TRUE 0.985 -15.000 0.110 0.004 Y NA
 29367 29368 CPn1037 CPn1038 aroC aroL TRUE 0.972 -3.000 0.006 1.000 Y NA
 29368 29369 CPn1038 CPn1039 aroL aroA TRUE 0.941 -64.000 0.006 1.000 Y NA
 29369 29370 CPn1039 CPn1040 aroA   FALSE 0.325 71.000 0.000 1.000   NA
 29370 29371 CPn1040 CPn1041   bioA TRUE 0.727 -18.000 0.003 1.000   NA
 29371 29372 CPn1041 CPn1042 bioA bioD TRUE 0.980 -63.000 0.124 0.003 Y NA
 29372 29373 CPn1042 CPn1043 bioD bioF_2 TRUE 0.973 -21.000 0.097 1.000 Y NA
 29373 29374 CPn1043 CPn1044 bioF_2 bioB TRUE 0.958 -21.000 0.008 1.000 Y NA
 29374 29375 CPn1044 CPn1045 bioB   FALSE 0.068 207.000 0.000 NA   NA
 29375 29376 CPn1045 CPn1046     TRUE 0.869 -3.000 0.020 NA   NA
 29377 29378 CPn1047 CPn1048 dapB asd FALSE 0.398 260.000 0.005 0.046 Y NA
 29378 29379 CPn1048 CPn1049 asd lysC TRUE 0.972 -12.000 0.022 1.000 Y NA
 29379 29380 CPn1049 CPn1050 lysC dapA TRUE 0.990 9.000 0.021 1.000 Y NA
 29380 29381 CPn1050 CPn1051 dapA   FALSE 0.110 161.000 0.000 NA   NA
 29381 29382 CPn1051 CPn1052     FALSE 0.137 144.000 0.000 NA   NA
 29382 29383 CPn1052 CPn1053     TRUE 0.654 -19.000 0.000 NA   NA
 29383 29384 CPn1053 CPn1054     FALSE 0.027 330.000 0.000 NA   NA
 29384 29385 CPn1054 CPn1055     FALSE 0.056 225.000 0.000 NA   NA
 29385 29386 CPn1055 CPn1056     TRUE 0.819 3.000 0.000 NA   NA
 29386 29387 CPn1056 CPn1057     FALSE 0.039 266.000 0.000 NA   NA
 29387 29388 CPn1057 CPn1058     TRUE 0.472 149.000 0.667 1.000   NA
 29388 29389 CPn1058 CPn1059   kgsA TRUE 0.898 9.000 0.005 1.000   NA
 29390 29391 CPn1060 CPn1061 tktB_2   TRUE 0.900 5.000 0.011 NA   NA
 29391 29392 CPn1061 CPn1062   xseA FALSE 0.050 236.000 0.000 NA   NA
 29393 29394 CPn1063 CPn1064 tpiS   TRUE 0.829 4.000 0.000 NA   NA
 29396 29397 CPn1066 CPn1067   def FALSE 0.051 244.000 0.002 1.000 N NA
 29400 29401 CPn1070 CPn1071     FALSE 0.021 371.000 0.000 NA   NA
 29402 29403 CPn1072 CPn1073     FALSE 0.402 173.000 1.000 NA   NA
 2132663 28350 CPnt38 CPn0001     FALSE 0.068 203.000 0.000 NA   NA