MicrobesOnline Operon Predictions for Deferribacter desulfuricans SSM1

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 10404136 10404137 DEFDS_0001 DEFDS_0002 dnaN   TRUE 0.997 0.000 0.318 0.059 Y NA
 10404137 10404138 DEFDS_0002 DEFDS_0003   gyrB TRUE 0.995 -3.000 0.249 1.000 Y NA
 10404138 10404139 DEFDS_0003 DEFDS_0004 gyrB gyrA TRUE 0.999 10.000 0.306 0.002 Y NA
 10404139 10404140 DEFDS_0004 DEFDS_0005 gyrA folD TRUE 0.971 2.000 0.004 1.000 N NA
 10404140 10404141 DEFDS_0005 DEFDS_0006 folD trmE TRUE 0.990 7.000 0.014 1.000   NA
 10404141 10404142 DEFDS_0006 DEFDS_0007 trmE   TRUE 0.966 28.000 0.020 1.000   NA
 10404142 10404143 DEFDS_0007 DEFDS_0008   gidB TRUE 0.988 -25.000 0.466 1.000 N NA
 10404143 10404144 DEFDS_0008 DEFDS_0009 gidB   TRUE 0.839 -61.000 0.002 1.000   NA
 10404144 10404145 DEFDS_0009 DEFDS_0010     FALSE 0.047 128.000 0.000 1.000   NA
 10404145 10404146 DEFDS_0010 DEFDS_0011     TRUE 0.686 -10.000 0.000 1.000   NA
 10404146 10404147 DEFDS_0011 DEFDS_0012     TRUE 0.971 -13.000 0.017 1.000 N NA
 10404147 10404148 DEFDS_0012 DEFDS_0013     TRUE 0.994 -3.000 0.250 NA N NA
 10404148 10404149 DEFDS_0013 DEFDS_0014   uvrA TRUE 0.873 -16.000 0.002 NA Y NA
 10404149 10404150 DEFDS_0014 DEFDS_0015 uvrA   TRUE 0.934 -13.000 0.004 1.000 N NA
 10404150 10404151 DEFDS_0015 DEFDS_0016     TRUE 0.990 1.000 0.032 NA   NA
 10404151 10404152 DEFDS_0016 DEFDS_0017     TRUE 0.987 -31.000 0.667 NA   NA
 10404152 10404153 DEFDS_0017 DEFDS_0018     FALSE 0.058 98.000 0.000 1.000 N NA
 10404154 10404155 DEFDS_0019 DEFDS_0020     FALSE 0.215 44.000 0.000 NA   NA
 10404155 10404156 DEFDS_0020 DEFDS_0021     TRUE 0.673 -7.000 0.000 NA   NA
 10404156 10404157 DEFDS_0021 DEFDS_0022   ftsJ TRUE 0.970 -3.000 0.007 NA   NA
 10404157 10404158 DEFDS_0022 DEFDS_0023 ftsJ   TRUE 0.978 8.000 0.006 NA Y NA
 10404158 10404159 DEFDS_0023 DEFDS_0024     TRUE 0.961 23.000 0.008 1.000   NA
 10404159 10404160 DEFDS_0024 DEFDS_0025     TRUE 0.997 0.000 0.622 NA   NA
 10404161 10404162 DEFDS_0026 DEFDS_0027     TRUE 0.877 12.000 0.000 1.000   NA
 10404163 10404164 DEFDS_0028 DEFDS_0029 cbiO cbiQ TRUE 0.987 -3.000 0.034 NA   NA
 10404164 10404165 DEFDS_0029 DEFDS_0030 cbiQ cbiL TRUE 0.694 -3.000 0.000 NA   NA
 10404165 10404166 DEFDS_0030 DEFDS_0031 cbiL cbiM TRUE 0.993 2.000 0.050 NA   NA
 10404166 10404167 DEFDS_0031 DEFDS_0032 cbiM cbiN TRUE 0.997 7.000 0.388 NA Y NA
 10404167 10404168 DEFDS_0032 DEFDS_0033 cbiN lpxC FALSE 0.016 304.000 0.000 NA N NA
 10404168 10404169 DEFDS_0033 DEFDS_0034 lpxC dnaB FALSE 0.214 177.000 0.003 1.000 N NA
 10404169 10404170 DEFDS_0034 DEFDS_0035 dnaB rplI TRUE 0.971 -13.000 0.017 1.000 N NA
 10404170 10404171 DEFDS_0035 DEFDS_0036 rplI   TRUE 0.556 63.000 0.003 1.000   NA
 10404171 10404172 DEFDS_0036 DEFDS_0037     TRUE 0.975 -16.000 0.026 1.000   NA
 10404172 10404173 DEFDS_0037 DEFDS_0038   recA TRUE 0.990 -3.000 0.021 0.033 N NA
 10404173 10404174 DEFDS_0038 DEFDS_0039 recA   TRUE 0.985 -7.000 0.024 1.000 N NA
 10404174 10404175 DEFDS_0039 DEFDS_0040     TRUE 0.991 -7.000 0.051 1.000   NA
 10404175 10404176 DEFDS_0040 DEFDS_0041   pgpA TRUE 0.991 -3.000 0.050 1.000   NA
 10404176 10404177 DEFDS_0041 DEFDS_0042 pgpA hisA TRUE 0.980 10.000 0.003 1.000 N NA
 10404177 10404178 DEFDS_0042 DEFDS_0043 hisA hisH TRUE 0.992 -6.000 0.031 0.007 Y NA
 10404178 10404179 DEFDS_0043 DEFDS_0044 hisH   TRUE 0.988 1.000 0.010 0.007 Y NA
 10404180 10404181 DEFDS_0045 DEFDS_0046   secA TRUE 0.993 -3.000 0.082 1.000   NA
 10404181 10404182 DEFDS_0046 DEFDS_0047 secA recJ FALSE 0.048 291.000 0.000 0.011 N NA
 10404182 10404183 DEFDS_0047 DEFDS_0048 recJ   TRUE 0.975 2.000 0.005 1.000 N NA
 10404183 10404184 DEFDS_0048 DEFDS_0049     TRUE 0.761 2.000 0.000 NA   NA
 10404185 10404186 DEFDS_0050 DEFDS_0051 tsf rpsB TRUE 0.998 3.000 0.748 1.000   NA
 10404187 10404188 DEFDS_0052 DEFDS_0053     TRUE 0.994 3.000 0.049 1.000 N NA
 10404188 10404189 DEFDS_0053 DEFDS_0054     TRUE 0.995 20.000 0.422 1.000 Y NA
 10404189 10404190 DEFDS_0054 DEFDS_0055     TRUE 0.996 1.000 0.449 NA N NA
 10404190 10404191 DEFDS_0055 DEFDS_0056     TRUE 0.996 4.000 0.196 NA   NA
 10404193 10404194 DEFDS_0058 DEFDS_0059     TRUE 0.990 7.000 0.015 1.000   NA
 10404194 10404195 DEFDS_0059 DEFDS_0060     TRUE 0.850 -3.000 0.000 0.031   NA
 10404195 10404196 DEFDS_0060 DEFDS_0061     TRUE 0.985 9.000 0.006 1.000   NA
 10404196 10404197 DEFDS_0061 DEFDS_0062   fbaA TRUE 0.987 11.000 0.006 1.000 N NA
 10404198 10404199 DEFDS_0063 DEFDS_0064     FALSE 0.081 85.000 0.000 1.000   NA
 10404199 10404200 DEFDS_0064 DEFDS_0065     TRUE 0.620 -10.000 0.000 NA   NA
 10404200 10404201 DEFDS_0065 DEFDS_0066   metG TRUE 0.965 -3.000 0.006 NA N NA
 10404201 10404202 DEFDS_0066 DEFDS_0067 metG   TRUE 0.992 -3.000 0.059 1.000   NA
 10404202 10404203 DEFDS_0067 DEFDS_0068     TRUE 0.996 -7.000 0.372 1.000   NA
 10404203 10404204 DEFDS_0068 DEFDS_0069   tmk TRUE 0.994 -9.000 0.254 1.000 N NA
 10404204 10404205 DEFDS_0069 DEFDS_0070 tmk   TRUE 0.938 -13.000 0.005 1.000 N NA
 10404205 10404206 DEFDS_0070 DEFDS_0071     FALSE 0.253 46.000 0.000 1.000   NA
 10404206 10404207 DEFDS_0071 DEFDS_0072     TRUE 0.749 17.000 0.000 NA   NA
 10404209 10404210 DEFDS_0074 DEFDS_0075     TRUE 0.881 40.000 0.014 1.000 Y NA
 10404210 10404211 DEFDS_0075 DEFDS_0076     TRUE 0.995 10.000 0.021 0.068 Y NA
 10404211 10404212 DEFDS_0076 DEFDS_0077     TRUE 0.997 21.000 0.312 0.001 Y NA
 10404212 10404213 DEFDS_0077 DEFDS_0078     FALSE 0.038 136.000 0.000 1.000 N NA
 10404213 10404214 DEFDS_0078 DEFDS_0079     TRUE 0.992 -7.000 0.095 1.000 N NA
 10404214 10404215 DEFDS_0079 DEFDS_0080     FALSE 0.111 70.000 0.000 1.000   NA
 10404215 10404216 DEFDS_0080 DEFDS_0081     TRUE 0.877 10.000 0.000 1.000   NA
 10404216 10404217 DEFDS_0081 DEFDS_t01   trn_Met1 FALSE 0.021 251.000 0.000 NA   NA
 10404217 10404218 DEFDS_t01 DEFDS_t02 trn_Met1 trn_Met2 FALSE 0.333 37.000 0.000 NA   NA
 10404220 10404221 DEFDS_0083 DEFDS_0084     FALSE 0.055 93.000 0.000 NA   NA
 10404221 10404222 DEFDS_0084 DEFDS_0085     FALSE 0.017 383.000 0.000 NA   NA
 10404222 10404223 DEFDS_0085 DEFDS_0086     TRUE 0.697 -3.000 0.000 1.000 Y NA
 10404223 10404224 DEFDS_0086 DEFDS_0087     TRUE 0.935 42.000 0.057 NA   NA
 10404224 10404225 DEFDS_0087 DEFDS_0088     TRUE 0.997 16.000 0.343 NA   NA
 10404226 10404227 DEFDS_0089 DEFDS_0090 ndk thrC TRUE 0.734 46.000 0.004 1.000 N NA
 10404227 10404228 DEFDS_0090 DEFDS_0091 thrC queA TRUE 0.955 -7.000 0.004 1.000 N NA
 10404228 10404229 DEFDS_0091 DEFDS_0092 queA tgt TRUE 0.988 5.000 0.005 0.001 Y NA
 10404229 10404230 DEFDS_0092 DEFDS_0093 tgt   TRUE 0.960 -7.000 0.006 NA N NA
 10404230 10404231 DEFDS_0093 DEFDS_0094   secD TRUE 0.985 20.000 0.044 NA Y NA
 10404231 10404232 DEFDS_0094 DEFDS_0095 secD secF TRUE 0.998 11.000 0.087 0.001 Y NA
 10404232 10404233 DEFDS_0095 DEFDS_0096 secF rho FALSE 0.023 282.000 0.000 1.000 N NA
 10404233 10404234 DEFDS_0096 DEFDS_0097 rho rpmE TRUE 0.865 70.000 0.115 1.000 N NA
 10404234 10404235 DEFDS_0097 DEFDS_0098 rpmE   TRUE 0.994 8.000 0.035 1.000 N NA
 10404235 10404236 DEFDS_0098 DEFDS_0099     TRUE 0.902 47.000 0.042 NA   NA
 10404236 10404237 DEFDS_0099 DEFDS_0100   prfA TRUE 0.987 -10.000 0.060 NA   NA
 10404237 10404238 DEFDS_0100 DEFDS_0101 prfA   TRUE 0.995 5.000 0.081 1.000 Y NA
 10404238 10404239 DEFDS_0101 DEFDS_0102   murA TRUE 0.968 -15.000 0.017 1.000 N NA
 10404239 10404240 DEFDS_0102 DEFDS_0103 murA hisG TRUE 0.991 -10.000 0.123 1.000 N NA
 10404240 10404241 DEFDS_0103 DEFDS_0104 hisG   TRUE 0.958 -7.000 0.004 1.000 N NA
 10404241 10404242 DEFDS_0104 DEFDS_0105     TRUE 0.981 27.000 0.068 1.000 Y NA
 10404242 10404243 DEFDS_0105 DEFDS_0106   lpxD TRUE 0.991 -3.000 0.060 1.000 Y NA
 10404243 10404244 DEFDS_0106 DEFDS_0107 lpxD fabZ TRUE 0.998 13.000 0.212 1.000 N NA
 10404244 10404245 DEFDS_0107 DEFDS_0108 fabZ lpxA TRUE 0.978 -3.000 0.011 1.000 N NA
 10404245 10404246 DEFDS_0108 DEFDS_0109 lpxA   TRUE 0.990 3.000 0.019 1.000   NA
 10404246 10404247 DEFDS_0109 DEFDS_0110     TRUE 0.994 6.000 0.045 NA   NA
 10404247 10404248 DEFDS_0110 DEFDS_0111     TRUE 0.975 -10.000 0.017 NA   NA
 10404248 10404249 DEFDS_0111 DEFDS_0112   pilD TRUE 0.980 5.000 0.008 NA Y NA
 10404249 10404250 DEFDS_0112 DEFDS_0113 pilD tyrS TRUE 0.987 13.000 0.007 1.000 N NA
 10404250 10404251 DEFDS_0113 DEFDS_0114 tyrS   TRUE 0.987 11.000 0.007 NA   NA
 10404251 10404252 DEFDS_0114 DEFDS_0115     TRUE 0.441 30.000 0.000 NA   NA
 10404252 10404253 DEFDS_0115 DEFDS_0116   lepA TRUE 0.973 15.000 0.003 1.000 Y NA
 10404253 10404254 DEFDS_0116 DEFDS_0117 lepA lepB TRUE 0.990 1.000 0.028 1.000 N NA
 10404254 10404255 DEFDS_0117 DEFDS_0118 lepB   TRUE 0.952 36.000 0.037 NA   NA
 10404255 10404256 DEFDS_0118 DEFDS_0119   pyrH TRUE 0.922 -13.000 0.003 NA   NA
 10404256 10404257 DEFDS_0119 DEFDS_0120 pyrH frr TRUE 0.995 -10.000 0.626 1.000 N NA
 10404257 10404258 DEFDS_0120 DEFDS_0121 frr   TRUE 0.997 1.000 0.409 1.000 N NA
 10404258 10404259 DEFDS_0121 DEFDS_0122   cdsA TRUE 0.986 -3.000 0.027 1.000 Y NA
 10404259 10404260 DEFDS_0122 DEFDS_0123 cdsA   TRUE 0.986 2.000 0.016 1.000 Y NA
 10404260 10404261 DEFDS_0123 DEFDS_0124     TRUE 0.997 0.000 0.568 1.000 N NA
 10404261 10404262 DEFDS_0124 DEFDS_0125     TRUE 0.980 2.000 0.007 1.000 N NA
 10404262 10404263 DEFDS_0125 DEFDS_0126   parA FALSE 0.205 49.000 0.000 1.000 N NA
 10404263 10404264 DEFDS_0126 DEFDS_0127 parA parB TRUE 0.997 -3.000 0.827 1.000 N NA
 10404264 10404265 DEFDS_0127 DEFDS_0128 parB   TRUE 0.964 -3.000 0.006 NA N NA
 10404265 10404266 DEFDS_0128 DEFDS_0129   tpiA TRUE 0.978 -3.000 0.014 NA N NA
 10404266 10404267 DEFDS_0129 DEFDS_0130 tpiA secG TRUE 0.996 12.000 0.044 1.000 N NA
 10404267 10404268 DEFDS_0130 DEFDS_0131 secG   TRUE 0.970 -3.000 0.006 1.000 N NA
 10404268 10404269 DEFDS_0131 DEFDS_0132     TRUE 0.998 15.000 0.235 0.027 Y NA
 10404269 10404270 DEFDS_0132 DEFDS_0133     TRUE 0.994 -16.000 0.456 0.027 Y NA
 10404270 10404271 DEFDS_0133 DEFDS_0134     TRUE 0.810 16.000 0.000 1.000 N NA
 10404271 10404272 DEFDS_0134 DEFDS_0135     TRUE 0.971 -7.000 0.009 NA   NA
 10404272 10404273 DEFDS_0135 DEFDS_0136   kdtA TRUE 0.970 -13.000 0.018 NA   NA
 10404273 10404274 DEFDS_0136 DEFDS_0137 kdtA   TRUE 0.987 0.000 0.023 1.000 Y NA
 10404274 10404275 DEFDS_0137 DEFDS_0138     TRUE 0.480 -25.000 0.000 1.000 N NA
 10404276 10404277 DEFDS_0139 DEFDS_0140     FALSE 0.024 136.000 0.000 NA Y NA
 10404278 10404279 DEFDS_0141 DEFDS_0142     TRUE 0.961 46.000 0.411 NA   NA
 10404279 10404280 DEFDS_0142 DEFDS_0143   recR TRUE 0.998 12.000 0.604 NA   NA
 10404281 10404282 DEFDS_0144 DEFDS_0145     TRUE 0.858 9.000 0.000 1.000   NA
 10404282 10404283 DEFDS_0145 DEFDS_0146     TRUE 0.893 4.000 0.000 0.073   NA
 10404284 10404285 DEFDS_0147 DEFDS_0148   rpmF TRUE 0.997 16.000 0.599 NA   NA
 10404285 10404286 DEFDS_0148 DEFDS_0149 rpmF plsX TRUE 0.998 12.000 0.418 1.000 N NA
 10404286 10404287 DEFDS_0149 DEFDS_0150 plsX   TRUE 0.645 231.000 0.058 0.007 Y NA
 10404287 10404288 DEFDS_0150 DEFDS_0151   fabD TRUE 0.984 19.000 0.009 0.007 Y NA
 10404288 10404289 DEFDS_0151 DEFDS_0152 fabD   TRUE 0.996 -3.000 0.149 0.007 Y NA
 10404289 10404290 DEFDS_0152 DEFDS_0153   acpP TRUE 0.995 20.000 0.100 0.007 Y NA
 10404290 10404291 DEFDS_0153 DEFDS_0154 acpP fabF TRUE 0.706 106.000 0.066 1.000 Y NA
 10404291 10404292 DEFDS_0154 DEFDS_0155 fabF rnc TRUE 0.985 -7.000 0.023 1.000 N NA
 10404292 10404293 DEFDS_0155 DEFDS_0156 rnc   TRUE 0.994 1.000 0.064 1.000   NA
 10404293 10404294 DEFDS_0156 DEFDS_0157     TRUE 0.885 -76.000 0.005 1.000   NA
 10404294 10404295 DEFDS_0157 DEFDS_0158     TRUE 0.996 -3.000 0.367 1.000 N NA
 10404295 10404296 DEFDS_0158 DEFDS_0159   dgt TRUE 0.525 -19.000 0.000 1.000 N NA
 10404296 10404297 DEFDS_0159 DEFDS_0160 dgt   TRUE 0.632 -12.000 0.000 1.000 N NA
 10404297 10404298 DEFDS_0160 DEFDS_0161   pilH TRUE 0.998 14.000 0.114 0.033 Y NA
 10404298 10404299 DEFDS_0161 DEFDS_0162 pilH   TRUE 0.995 -3.000 0.400 1.000 Y NA
 10404299 10404300 DEFDS_0162 DEFDS_0163     TRUE 0.926 11.000 0.000 0.016 Y NA
 10404300 10404301 DEFDS_0163 DEFDS_0164     TRUE 0.998 6.000 0.300 0.022 Y NA
 10404301 10404302 DEFDS_0164 DEFDS_0165     TRUE 0.705 -19.000 0.000 0.022   NA
 10404302 10404303 DEFDS_0165 DEFDS_0166     TRUE 0.525 -22.000 0.000 1.000   NA
 10404303 10404304 DEFDS_0166 DEFDS_0167   purM TRUE 0.609 -13.000 0.000 1.000 N NA
 10404304 10404305 DEFDS_0167 DEFDS_0168 purM purN TRUE 0.997 -3.000 0.238 0.004 Y NA
 10404305 10404306 DEFDS_0168 DEFDS_0169 purN   TRUE 0.942 -16.000 0.006 1.000   NA
 10404306 10404307 DEFDS_0169 DEFDS_0170     TRUE 0.649 23.000 0.000 1.000   NA
 10404307 10404308 DEFDS_0170 DEFDS_0171     TRUE 0.998 13.000 0.302 NA   NA
 10404310 10404311 DEFDS_0173 DEFDS_0174 ccmE ccmF TRUE 0.747 66.000 0.008 0.003 Y NA
 10404311 10404312 DEFDS_0174 DEFDS_0175 ccmF   TRUE 0.863 10.000 0.000 1.000 N NA
 10404312 10404313 DEFDS_0175 DEFDS_0176   ccmB TRUE 0.729 -3.000 0.000 1.000 N NA
 10404313 10404314 DEFDS_0176 DEFDS_0177 ccmB ccmC TRUE 0.998 1.000 0.501 0.002 Y NA
 10404315 10404316 DEFDS_t03 DEFDS_t04 trn_Gly1 trn_Leu1 TRUE 0.797 6.000 0.000 NA   NA
 10404316 10404317 DEFDS_t04 DEFDS_t05 trn_Leu1 trn_His TRUE 0.811 15.000 0.000 NA   NA
 10404317 10404318 DEFDS_t05 DEFDS_t06 trn_His trn_Arg1 TRUE 0.688 19.000 0.000 NA   NA
 10404318 10404319 DEFDS_t06 DEFDS_0179 trn_Arg1   FALSE 0.113 61.000 0.000 NA   NA
 10404319 10404320 DEFDS_0179 DEFDS_0180     FALSE 0.021 351.000 0.000 1.000 N NA
 10404320 10404321 DEFDS_0180 DEFDS_0181   rnhB TRUE 0.992 -7.000 0.111 1.000 Y NA
 10404321 10404322 DEFDS_0181 DEFDS_0182 rnhB   TRUE 0.893 -28.000 0.004 1.000 N NA
 10404322 10404323 DEFDS_0182 DEFDS_0183     TRUE 0.994 0.000 0.027 0.002   NA
 10404325 10404326 DEFDS_0185 DEFDS_0186     TRUE 0.620 -10.000 0.000 NA   NA
 10404326 10404327 DEFDS_0186 DEFDS_0187     TRUE 0.568 -13.000 0.000 NA   NA
 10404328 10404329 DEFDS_0188 DEFDS_0189     TRUE 0.502 101.000 0.011 1.000 N NA
 10404329 10404330 DEFDS_0189 DEFDS_0190     TRUE 0.989 -3.000 0.042 NA   NA
 10404330 10404331 DEFDS_0190 DEFDS_0191     TRUE 0.965 -16.000 0.019 NA   NA
 10404331 10404332 DEFDS_0191 DEFDS_0192   tig FALSE 0.032 170.000 0.000 1.000 N NA
 10404332 10404333 DEFDS_0192 DEFDS_0193 tig clpP TRUE 0.997 5.000 0.351 1.000 Y NA
 10404333 10404334 DEFDS_0193 DEFDS_0194 clpP clpX TRUE 0.914 65.000 0.352 1.000 Y NA
 10404334 10404335 DEFDS_0194 DEFDS_0195 clpX   TRUE 0.707 149.000 0.201 1.000 Y NA
 10404335 10404336 DEFDS_0195 DEFDS_0196   rpsU TRUE 0.988 8.000 0.010 1.000   NA
 10404337 10404338 DEFDS_0197 DEFDS_0198   nadB FALSE 0.398 -34.000 0.000 NA   NA
 10404338 10404339 DEFDS_0198 DEFDS_0199 nadB   TRUE 0.979 1.000 0.009 NA   NA
 10404339 10404340 DEFDS_0199 DEFDS_0200     TRUE 0.694 -3.000 0.000 NA   NA
 10404341 10404342 DEFDS_0201 DEFDS_0202 eno   FALSE 0.067 91.000 0.000 1.000 N NA
 10404343 10404344 DEFDS_0203 DEFDS_0204   ppa TRUE 0.518 28.000 0.000 1.000 N NA
 10404345 10404346 DEFDS_0205 DEFDS_0206     FALSE 0.028 119.000 0.000 NA Y NA
 10404347 10404348 DEFDS_0207 DEFDS_0208 cysK   TRUE 0.996 11.000 0.019 0.016 Y NA
 10404348 10404349 DEFDS_0208 DEFDS_0209     TRUE 0.956 35.000 0.047 NA N NA
 10404349 10404350 DEFDS_0209 DEFDS_0210   argC FALSE 0.016 309.000 0.000 NA N NA
 10404351 10404352 DEFDS_0211 DEFDS_0212     TRUE 0.620 -10.000 0.000 NA   NA
 10404352 10404353 DEFDS_0212 DEFDS_0213     FALSE 0.023 218.000 0.000 NA   NA
 10404353 10404354 DEFDS_0213 DEFDS_0214   dapF TRUE 0.998 11.000 0.104 0.002 Y NA
 10404354 10404355 DEFDS_0214 DEFDS_0215 dapF dapA TRUE 0.980 14.000 0.004 1.000 Y NA
 10404355 10404356 DEFDS_0215 DEFDS_0216 dapA dapB TRUE 0.982 12.000 0.004 1.000 Y NA
 10404356 10404357 DEFDS_0216 DEFDS_0217 dapB   FALSE 0.084 83.000 0.000 1.000   NA
 10404357 10404358 DEFDS_0217 DEFDS_0218     TRUE 0.997 10.000 0.119 NA   NA
 10404358 10404359 DEFDS_0218 DEFDS_0219     FALSE 0.024 213.000 0.000 NA   NA
 10404359 10404360 DEFDS_0219 DEFDS_0220   thiG TRUE 0.842 19.000 0.000 0.046   NA
 10404360 10404361 DEFDS_0220 DEFDS_0221 thiG thiH TRUE 0.998 5.000 0.277 0.006 Y NA
 10404361 10404362 DEFDS_0221 DEFDS_0222 thiH trmA TRUE 0.976 7.000 0.004 1.000 N NA
 10404362 10404363 DEFDS_0222 DEFDS_0223 trmA   TRUE 0.774 1.000 0.000 1.000 N NA
 10404363 10404364 DEFDS_0223 DEFDS_0224     TRUE 0.694 -3.000 0.000 NA   NA
 10404364 10404365 DEFDS_0224 DEFDS_0225     FALSE 0.019 311.000 0.000 NA   NA
 10404365 10404366 DEFDS_0225 DEFDS_0226     FALSE 0.059 88.000 0.000 1.000 Y NA
 10404366 10404367 DEFDS_0226 DEFDS_0227     TRUE 0.991 10.000 0.012 1.000 N NA
 10404367 10404368 DEFDS_0227 DEFDS_0228     TRUE 0.992 0.000 0.019 0.008   NA
 10404368 10404369 DEFDS_0228 DEFDS_0229     TRUE 0.965 0.000 0.003 1.000   NA
 10404369 10404370 DEFDS_0229 DEFDS_0230     TRUE 0.983 -3.000 0.015 1.000   NA
 10404370 10404371 DEFDS_0230 DEFDS_0231     TRUE 0.623 -70.000 0.000 0.008   NA
 10404371 10404372 DEFDS_0231 DEFDS_0232     TRUE 0.971 2.000 0.003 1.000   NA
 10404373 10404374 DEFDS_t07 DEFDS_0233 trn_SeC   TRUE 0.800 7.000 0.000 NA   NA
 10404376 10404377 DEFDS_0235 DEFDS_0236 ppdK glyS TRUE 0.621 168.000 0.071 1.000 N NA
 10404377 10404378 DEFDS_0236 DEFDS_0237 glyS leuD FALSE 0.092 73.000 0.000 1.000 N NA
 10404378 10404379 DEFDS_0237 DEFDS_0238 leuD leuC TRUE 0.999 14.000 0.268 0.001 Y NA
 10404380 10404381 DEFDS_0239 DEFDS_0240 groES groEL TRUE 0.990 29.000 0.800 1.000 Y NA
 10404382 10404383 DEFDS_0241 DEFDS_0243     FALSE 0.021 257.000 0.000 NA   NA
 10404383 10404384 DEFDS_0243 DEFDS_0244     FALSE 0.354 -1422.000 0.000 NA   NA
 10404384 10404385 DEFDS_0244 DEFDS_0246     FALSE 0.028 213.000 0.000 1.000 N NA
 10404387 10404388 DEFDS_0248 DEFDS_0249 rpsI rplM TRUE 0.999 12.000 0.601 0.023 Y NA
 10404388 10404389 DEFDS_0249 DEFDS_0250 rplM rplS TRUE 0.987 13.000 0.004 0.023 Y NA
 10404389 10404390 DEFDS_0250 DEFDS_0251 rplS trmD TRUE 0.998 12.000 0.567 1.000 Y NA
 10404390 10404391 DEFDS_0251 DEFDS_0252 trmD   TRUE 0.993 -13.000 0.672 1.000 Y NA
 10404391 10404392 DEFDS_0252 DEFDS_0253     TRUE 0.998 15.000 0.324 1.000   NA
 10404392 10404393 DEFDS_0253 DEFDS_0254   rpsP TRUE 0.997 16.000 0.385 1.000   NA
 10404393 10404394 DEFDS_0254 DEFDS_0255 rpsP ffh TRUE 0.998 15.000 0.361 1.000 N NA
 10404394 10404395 DEFDS_0255 DEFDS_0256 ffh   FALSE 0.188 70.000 0.000 0.032   NA
 10404395 10404396 DEFDS_0256 DEFDS_0257     TRUE 0.882 11.000 0.000 1.000   NA
 10404396 10404397 DEFDS_0257 DEFDS_0258     TRUE 0.994 -3.000 0.108 1.000 N NA
 10404397 10404398 DEFDS_0258 DEFDS_0259     TRUE 0.972 0.000 0.007 NA   NA
 10404398 10404399 DEFDS_0259 DEFDS_0260     FALSE 0.178 49.000 0.000 NA   NA
 10404399 10404400 DEFDS_0260 DEFDS_0261   argB TRUE 0.967 -3.000 0.005 1.000 N NA
 10404400 10404401 DEFDS_0261 DEFDS_0262 argB   TRUE 0.831 8.000 0.000 1.000 N NA
 10404401 10404402 DEFDS_0262 DEFDS_0263     TRUE 0.609 -13.000 0.000 1.000 N NA
 10404403 10404404 DEFDS_0264 DEFDS_0265   rplU FALSE 0.048 101.000 0.000 NA   NA
 10404404 10404405 DEFDS_0265 DEFDS_0266 rplU rpmA TRUE 0.999 11.000 0.667 0.023 Y NA
 10404405 10404406 DEFDS_0266 DEFDS_0267 rpmA obg TRUE 0.853 96.000 0.335 1.000   NA
 10404406 10404407 DEFDS_0267 DEFDS_0268 obg   TRUE 0.914 -16.000 0.004 NA   NA
 10404407 10404408 DEFDS_0268 DEFDS_0269     TRUE 0.846 41.000 0.010 NA   NA
 10404411 10404412 DEFDS_0272 DEFDS_0273 selB selA TRUE 0.996 -18.000 0.569 0.001 N NA
 10404412 10404413 DEFDS_0273 DEFDS_0274 selA   TRUE 0.872 13.000 0.000 1.000   NA
 10404413 10404414 DEFDS_0274 DEFDS_0275     TRUE 0.733 -7.000 0.000 1.000   NA
 10404414 10404415 DEFDS_0275 DEFDS_0276     TRUE 0.993 -3.000 0.068 1.000   NA
 10404416 10404417 DEFDS_t08 DEFDS_0277 trn_Leu2   FALSE 0.020 270.000 0.000 NA   NA
 10404418 10404419 DEFDS_0278 DEFDS_0279     FALSE 0.045 107.000 0.000 NA   NA
 10404419 10404420 DEFDS_0279 DEFDS_0280     FALSE 0.037 123.000 0.000 NA   NA
 10404421 10404422 DEFDS_0281 DEFDS_0282     TRUE 0.993 -13.000 0.500 NA   NA
 10404422 10404423 DEFDS_0282 DEFDS_0283     FALSE 0.018 316.000 0.000 NA   NA
 10404425 10404426 DEFDS_0285 DEFDS_0287     TRUE 0.785 4.000 0.000 NA   NA
 10404426 10404427 DEFDS_0287 DEFDS_0288     FALSE 0.036 170.000 0.000 1.000   NA
 10404427 10404428 DEFDS_0288 DEFDS_0289     FALSE 0.139 55.000 0.000 NA   NA
 10404428 10404429 DEFDS_0289 DEFDS_0290     TRUE 0.673 -7.000 0.000 NA   NA
 10404429 10404430 DEFDS_0290 DEFDS_0291     TRUE 0.694 -3.000 0.000 NA   NA
 10404430 10404431 DEFDS_0291 DEFDS_0292     TRUE 0.775 3.000 0.000 NA   NA
 10404431 10404432 DEFDS_0292 DEFDS_0294     FALSE 0.049 99.000 0.000 NA   NA
 10404432 10404433 DEFDS_0294 DEFDS_0295     TRUE 0.995 -3.000 0.308 1.000 Y NA
 10404434 10404435 DEFDS_0296 DEFDS_0297     TRUE 0.842 10.000 0.000 NA   NA
 10404436 10404437 DEFDS_0298 DEFDS_0299     FALSE 0.099 66.000 0.000 NA   NA
 10404437 10404438 DEFDS_0299 DEFDS_0300     TRUE 0.718 26.000 0.000 0.046   NA
 10404438 10404439 DEFDS_0300 DEFDS_0301     FALSE 0.084 135.000 0.000 0.002 Y NA
 10404439 10404440 DEFDS_0301 DEFDS_0302     TRUE 0.691 19.000 0.000 1.000 Y NA
 10404440 10404441 DEFDS_0302 DEFDS_0303     FALSE 0.225 43.000 0.000 NA   NA
 10404441 10404442 DEFDS_0303 DEFDS_0304     FALSE 0.024 205.000 0.000 NA   NA
 10404442 10404443 DEFDS_0304 DEFDS_0305     TRUE 0.694 -3.000 0.000 NA   NA
 10404443 10404444 DEFDS_0305 DEFDS_0306     TRUE 0.521 24.000 0.000 NA N NA
 10404444 10404445 DEFDS_0306 DEFDS_0307     TRUE 0.782 16.000 0.000 NA   NA
 10404445 10404446 DEFDS_0307 DEFDS_0308     FALSE 0.026 187.000 0.000 NA   NA
 10404446 10404447 DEFDS_0308 DEFDS_0309     FALSE 0.209 45.000 0.000 NA   NA
 10404447 10404448 DEFDS_0309 DEFDS_0313     FALSE 0.016 1243.000 0.000 NA   NA
 10404448 10404449 DEFDS_0313 DEFDS_0314     TRUE 0.482 -19.000 0.000 NA   NA
 10404449 10404450 DEFDS_0314 DEFDS_0315     TRUE 0.694 -3.000 0.000 NA   NA
 10404451 10404452 DEFDS_0316 DEFDS_0317 rpmB   FALSE 0.034 157.000 0.000 1.000 N NA
 10404453 10404454 DEFDS_t09 DEFDS_0318 trn_Gly2 hemE FALSE 0.024 205.000 0.000 NA   NA
 10404454 10404455 DEFDS_0318 DEFDS_0319 hemE hemH TRUE 0.994 0.000 0.131 1.000 Y NA
 10404455 10404456 DEFDS_0319 DEFDS_0320 hemH ubiA TRUE 0.980 3.000 0.007 1.000 Y NA
 10404456 10404457 DEFDS_0320 DEFDS_0321 ubiA ubiX TRUE 0.983 -3.000 0.019 1.000 Y NA
 10404457 10404458 DEFDS_0321 DEFDS_0322 ubiX   TRUE 0.993 18.000 0.068 NA   NA
 10404458 10404459 DEFDS_0322 DEFDS_0323     TRUE 0.998 13.000 1.000 NA   NA
 10404459 10404460 DEFDS_0323 DEFDS_0324     TRUE 0.997 5.000 0.500 NA   NA
 10404460 10404461 DEFDS_0324 DEFDS_0325     TRUE 0.996 -3.000 0.500 NA   NA
 10404462 10404463 DEFDS_0326 DEFDS_0327     TRUE 0.793 -7.000 0.000 0.061 Y NA
 10404464 10404465 DEFDS_0328 DEFDS_0329     TRUE 0.978 4.000 0.005 1.000 N NA
 10404465 10404466 DEFDS_0329 DEFDS_0330     TRUE 0.875 2.000 0.000 0.018 Y NA
 10404466 10404467 DEFDS_0330 DEFDS_0331     FALSE 0.314 -39.000 0.000 NA Y NA
 10404467 10404468 DEFDS_0331 DEFDS_0332     TRUE 0.984 1.000 0.018 NA Y NA
 10404468 10404469 DEFDS_0332 DEFDS_0333     TRUE 0.988 -3.000 0.037 1.000 Y NA
 10404469 10404470 DEFDS_0333 DEFDS_0334     TRUE 0.709 -7.000 0.000 1.000 N NA
 10404470 10404471 DEFDS_0334 DEFDS_0335     TRUE 0.823 12.000 0.000 NA N NA
 10404471 10404472 DEFDS_0335 DEFDS_0336     FALSE 0.401 -19.000 0.000 NA Y NA
 10404472 10404473 DEFDS_0336 DEFDS_0337     TRUE 0.992 -10.000 0.059 0.018 Y NA
 10404473 10404474 DEFDS_0337 DEFDS_0338     TRUE 0.982 36.000 0.118 0.018 Y NA
 10404474 10404475 DEFDS_0338 DEFDS_0339     TRUE 0.787 4.000 0.000 1.000 Y NA
 10404475 10404476 DEFDS_0339 DEFDS_0340     TRUE 0.826 14.000 0.000 NA   NA
 10404476 10404477 DEFDS_0340 DEFDS_0341   lpxK TRUE 0.743 1.000 0.000 NA   NA
 10404479 10404480 DEFDS_0343 DEFDS_0344     TRUE 0.925 39.000 0.023 1.000 N NA
 10404480 10404481 DEFDS_0344 DEFDS_0345   selD TRUE 0.703 130.000 0.104 1.000 N NA
 10404481 10404482 DEFDS_0345 DEFDS_0346 selD rpmH FALSE 0.043 135.000 0.000 1.000   NA
 10404482 10404483 DEFDS_0346 DEFDS_0347 rpmH rnpA TRUE 0.998 4.000 0.787 1.000   NA
 10404483 10404484 DEFDS_0347 DEFDS_0348 rnpA   TRUE 0.984 -46.000 0.540 NA   NA
 10404484 10404485 DEFDS_0348 DEFDS_0349     TRUE 0.995 20.000 0.461 NA   NA
 10404485 10404486 DEFDS_0349 DEFDS_0350     TRUE 0.998 9.000 0.254 1.000   NA
 10404486 10404487 DEFDS_0350 DEFDS_0351     TRUE 0.778 0.000 0.000 1.000   NA
 10404487 10404488 DEFDS_0351 DEFDS_0352     TRUE 0.882 11.000 0.000 1.000   NA
 10404488 10404489 DEFDS_0352 DEFDS_0353     FALSE 0.016 495.000 0.000 NA   NA
 10404489 10404490 DEFDS_0353 DEFDS_0354     FALSE 0.043 111.000 0.000 NA   NA
 10404490 10404491 DEFDS_0354 DEFDS_0355     TRUE 0.995 -3.000 0.364 NA   NA
 10404491 10404492 DEFDS_0355 DEFDS_0356     FALSE 0.070 76.000 0.000 NA   NA
 10404492 10404493 DEFDS_0356 DEFDS_0358     FALSE 0.039 419.000 0.000 0.048   NA
 10404493 10404494 DEFDS_0358 DEFDS_0360     FALSE 0.016 656.000 0.000 NA   NA
 10404494 10404495 DEFDS_0360 DEFDS_0363     FALSE 0.017 442.000 0.000 NA   NA
 10404495 10404496 DEFDS_0363 DEFDS_0364     FALSE 0.398 -34.000 0.000 NA   NA
 10404496 10404497 DEFDS_0364 DEFDS_0365     FALSE 0.016 721.000 0.000 NA   NA
 10404497 10404498 DEFDS_0365 DEFDS_0367     FALSE 0.113 61.000 0.000 NA   NA
 10404498 10404499 DEFDS_0367 DEFDS_0368     TRUE 0.992 -13.000 0.383 1.000 Y NA
 10404499 10404500 DEFDS_0368 DEFDS_0369     TRUE 0.752 -3.000 0.000 1.000   NA
 10404500 10404501 DEFDS_0369 DEFDS_0370     TRUE 0.843 7.000 0.000 1.000   NA
 10404501 10404502 DEFDS_0370 DEFDS_0371     TRUE 0.723 0.000 0.000 NA   NA
 10404502 10404503 DEFDS_0371 DEFDS_0372     TRUE 0.620 -10.000 0.000 NA   NA
 10404503 10404504 DEFDS_0372 DEFDS_0373     TRUE 0.994 -7.000 0.222 1.000 Y NA
 10404504 10404505 DEFDS_0373 DEFDS_0374     TRUE 0.840 -3.000 0.000 0.061   NA
 10404505 10404506 DEFDS_0374 DEFDS_0375     TRUE 0.778 0.000 0.000 1.000   NA
 10404506 10404507 DEFDS_0375 DEFDS_0376     TRUE 0.988 -7.000 0.046 NA   NA
 10404507 10404508 DEFDS_0376 DEFDS_0377     TRUE 0.979 -3.000 0.014 NA   NA
 10404508 10404509 DEFDS_0377 DEFDS_0378     TRUE 0.994 -7.000 0.235 1.000 Y NA
 10404509 10404510 DEFDS_0378 DEFDS_0379     TRUE 0.991 17.000 0.026 1.000   NA
 10404510 10404511 DEFDS_0379 DEFDS_0380     FALSE 0.081 72.000 0.000 NA   NA
 10404511 10404512 DEFDS_0380 DEFDS_0381     TRUE 0.620 -10.000 0.000 NA   NA
 10404512 10404513 DEFDS_0381 DEFDS_0382     TRUE 0.482 -19.000 0.000 NA   NA
 10404513 10404514 DEFDS_0382 DEFDS_0383     TRUE 0.987 -10.000 0.057 NA   NA
 10404514 10404515 DEFDS_0383 DEFDS_0384     FALSE 0.245 41.000 0.000 NA   NA
 10404515 10404516 DEFDS_0384 DEFDS_0385     FALSE 0.017 375.000 0.000 NA   NA
 10404516 10404517 DEFDS_0385 DEFDS_0386     TRUE 0.761 2.000 0.000 NA   NA
 10404517 10404518 DEFDS_0386 DEFDS_0387     FALSE 0.019 289.000 0.000 NA   NA
 10404518 10404519 DEFDS_0387 DEFDS_0388     TRUE 0.694 -3.000 0.000 NA   NA
 10404519 10404520 DEFDS_0388 DEFDS_0389     FALSE 0.019 294.000 0.000 NA   NA
 10404520 10404521 DEFDS_0389 DEFDS_0390     FALSE 0.020 263.000 0.000 NA   NA
 10404521 10404522 DEFDS_0390 DEFDS_0391     FALSE 0.078 73.000 0.000 NA   NA
 10404522 10404523 DEFDS_0391 DEFDS_0392     FALSE 0.017 359.000 0.000 NA   NA
 10404523 10404524 DEFDS_0392 DEFDS_0393     FALSE 0.055 93.000 0.000 NA   NA
 10404524 10404525 DEFDS_0393 DEFDS_0394     FALSE 0.022 239.000 0.000 NA   NA
 10404525 10404526 DEFDS_0394 DEFDS_0395     FALSE 0.020 271.000 0.000 NA   NA
 10404526 10404527 DEFDS_0395 DEFDS_0396     TRUE 0.994 -3.000 0.176 NA   NA
 10404527 10404528 DEFDS_0396 DEFDS_0397     FALSE 0.030 148.000 0.000 NA   NA
 10404530 10404531 DEFDS_0399 DEFDS_0400 pstS pstC TRUE 0.631 610.000 0.086 0.002 Y NA
 10404531 10404532 DEFDS_0400 DEFDS_0401 pstC pstA TRUE 0.997 -10.000 0.537 0.002 Y NA
 10404532 10404533 DEFDS_0401 DEFDS_0402 pstA pstB TRUE 0.998 -3.000 0.526 0.002 Y NA
 10404533 10404534 DEFDS_0402 DEFDS_0403 pstB   FALSE 0.063 84.000 0.000 NA   NA
 10404534 10404535 DEFDS_0403 DEFDS_0404     TRUE 0.782 16.000 0.000 NA   NA
 10404535 10404536 DEFDS_0404 DEFDS_0405     TRUE 0.989 3.000 0.023 NA N NA
 10404536 10404537 DEFDS_0405 DEFDS_0406     TRUE 0.996 -3.000 0.538 1.000 Y NA
 10404537 10404538 DEFDS_0406 DEFDS_0407     FALSE 0.070 76.000 0.000 NA   NA
 10404538 10404539 DEFDS_0407 DEFDS_0408     TRUE 0.990 0.000 0.039 NA   NA
 10404539 10404540 DEFDS_0408 DEFDS_0409     TRUE 0.828 16.000 0.000 1.000   NA
 10404540 10404541 DEFDS_0409 DEFDS_0410   ftsK TRUE 0.971 -9.000 0.010 1.000 N NA
 10404541 10404542 DEFDS_0410 DEFDS_0411 ftsK   TRUE 0.987 -7.000 0.034 1.000 N NA
 10404542 10404543 DEFDS_0411 DEFDS_0412   fliR TRUE 0.859 47.000 0.017 1.000 N NA
 10404543 10404544 DEFDS_0412 DEFDS_0413 fliR flhB TRUE 0.996 0.000 0.353 1.000 Y NA
 10404544 10404545 DEFDS_0413 DEFDS_0414 flhB flhA TRUE 0.814 125.000 0.171 0.011 Y NA
 10404545 10404546 DEFDS_0414 DEFDS_0415 flhA flhF TRUE 0.994 -10.000 0.440 1.000 Y NA
 10404546 10404547 DEFDS_0415 DEFDS_0416 flhF flhG TRUE 0.996 0.000 0.382 1.000 N NA
 10404547 10404548 DEFDS_0416 DEFDS_0417 flhG   TRUE 0.983 2.000 0.012 NA   NA
 10404548 10404549 DEFDS_0417 DEFDS_0418   fliA TRUE 0.972 -3.000 0.008 NA   NA
 10404549 10404550 DEFDS_0418 DEFDS_0419 fliA   TRUE 0.986 -3.000 0.012 0.070 N NA
 10404550 10404551 DEFDS_0419 DEFDS_0420   fliM TRUE 0.992 16.000 0.016 0.022 Y NA
 10404551 10404552 DEFDS_0420 DEFDS_0421 fliM fliN TRUE 0.996 -3.000 0.142 0.002 Y NA
 10404552 10404553 DEFDS_0421 DEFDS_0422 fliN   TRUE 0.901 54.000 0.062 1.000 N NA
 10404553 10404554 DEFDS_0422 DEFDS_0423     TRUE 0.995 2.000 0.062 1.000   NA
 10404554 10404555 DEFDS_0423 DEFDS_0424     TRUE 0.992 10.000 0.014 1.000   NA
 10404555 10404556 DEFDS_0424 DEFDS_0425     TRUE 0.924 -28.000 0.009 NA   NA
 10404556 10404557 DEFDS_0425 DEFDS_0426     FALSE 0.358 -79.000 0.000 NA   NA
 10404557 10404558 DEFDS_0426 DEFDS_0427     TRUE 0.568 -13.000 0.000 NA   NA
 10404558 10404559 DEFDS_0427 DEFDS_0428     TRUE 0.993 -13.000 0.750 NA   NA
 10404559 10404560 DEFDS_0428 DEFDS_0429     TRUE 0.997 2.000 0.750 1.000 Y NA
 10404560 10404561 DEFDS_0429 DEFDS_0430     TRUE 0.998 4.000 0.500 1.000 N NA
 10404561 10404562 DEFDS_0430 DEFDS_0431     TRUE 0.996 -3.000 0.400 1.000 N NA
 10404562 10404563 DEFDS_0431 DEFDS_0432     TRUE 0.997 4.000 0.400 NA   NA
 10404563 10404564 DEFDS_0432 DEFDS_0433     TRUE 0.997 2.000 0.667 NA   NA
 10404564 10404565 DEFDS_0433 DEFDS_0434     TRUE 0.782 16.000 0.000 NA   NA
 10404565 10404566 DEFDS_0434 DEFDS_0435     TRUE 0.568 -13.000 0.000 NA   NA
 10404567 10404568 DEFDS_0436 DEFDS_0437     TRUE 0.994 1.000 0.071 1.000 Y NA
 10404569 10404570 DEFDS_0438 DEFDS_0439 trpE trpG TRUE 0.986 -19.000 0.041 0.001 Y NA
 10404570 10404571 DEFDS_0439 DEFDS_0440 trpG trpD TRUE 0.961 -7.000 0.005 1.000 Y NA
 10404571 10404572 DEFDS_0440 DEFDS_0441 trpD trpC TRUE 0.995 0.000 0.216 1.000 Y NA
 10404572 10404573 DEFDS_0441 DEFDS_0442 trpC trpF TRUE 0.998 2.000 0.264 0.002 Y NA
 10404573 10404574 DEFDS_0442 DEFDS_0443 trpF trpB TRUE 0.996 9.000 0.024 0.002 Y NA
 10404574 10404575 DEFDS_0443 DEFDS_0444 trpB trpA TRUE 0.994 -3.000 0.044 0.002 Y NA
 10404575 10404576 DEFDS_0444 DEFDS_0445 trpA   FALSE 0.403 32.000 0.000 NA   NA
 10404576 10404577 DEFDS_0445 DEFDS_0446   rph TRUE 0.620 -10.000 0.000 NA   NA
 10404577 10404578 DEFDS_0446 DEFDS_0447 rph   TRUE 0.995 -3.000 0.262 1.000 N NA
 10404578 10404579 DEFDS_0447 DEFDS_0448     TRUE 0.906 -19.000 0.004 1.000 N NA
 10404579 10404580 DEFDS_0448 DEFDS_0449     TRUE 0.990 3.000 0.019 1.000 N NA
 10404580 10404581 DEFDS_0449 DEFDS_0450   aroB TRUE 0.982 -7.000 0.020 1.000 Y NA
 10404581 10404582 DEFDS_0450 DEFDS_0451 aroB   TRUE 0.733 -7.000 0.000 1.000   NA
 10404582 10404583 DEFDS_0451 DEFDS_0452     TRUE 0.673 -7.000 0.000 NA   NA
 10404583 10404584 DEFDS_0452 DEFDS_0453   aroQ TRUE 0.963 -7.000 0.006 NA   NA
 10404584 10404585 DEFDS_0453 DEFDS_0454 aroQ   TRUE 0.996 6.000 0.168 1.000 Y NA
 10404585 10404586 DEFDS_0454 DEFDS_0455   efp TRUE 0.997 14.000 0.160 1.000 N NA
 10404586 10404587 DEFDS_0455 DEFDS_0456 efp accB TRUE 0.982 30.000 0.120 1.000 N NA
 10404587 10404588 DEFDS_0456 DEFDS_0457 accB accC TRUE 0.977 21.000 0.006 0.002 Y NA
 10404588 10404589 DEFDS_0457 DEFDS_0458 accC   TRUE 0.729 -3.000 0.000 1.000 N NA
 10404589 10404590 DEFDS_0458 DEFDS_0459     TRUE 0.673 -7.000 0.000 NA   NA
 10404590 10404591 DEFDS_0459 DEFDS_0460   ispE TRUE 0.981 15.000 0.005 NA   NA
 10404591 10404592 DEFDS_0460 DEFDS_0461 ispE prsA TRUE 0.986 12.000 0.005 1.000 N NA
 10404592 10404593 DEFDS_0461 DEFDS_0462 prsA pth TRUE 0.983 12.000 0.004 1.000 N NA
 10404593 10404594 DEFDS_0462 DEFDS_0463 pth   TRUE 0.964 -15.000 0.014 1.000 N NA
 10404594 10404595 DEFDS_0463 DEFDS_0464     TRUE 0.560 56.000 0.002 1.000 N NA
 10404595 10404596 DEFDS_0464 DEFDS_0465     TRUE 0.945 -7.000 0.003 NA   NA
 10404596 10404597 DEFDS_0465 DEFDS_0466   moaC TRUE 0.959 -3.000 0.004 NA   NA
 10404597 10404598 DEFDS_0466 DEFDS_0467 moaC   TRUE 0.953 23.000 0.006 1.000   NA
 10404598 10404599 DEFDS_0467 DEFDS_0468   nadE TRUE 0.978 1.000 0.006 1.000   NA
 10404599 10404600 DEFDS_0468 DEFDS_0469 nadE guaB TRUE 0.779 17.000 0.000 1.000 N NA
 10404600 10404601 DEFDS_0469 DEFDS_0470 guaB guaA TRUE 0.983 39.000 0.190 0.001 Y NA
 10404601 10404602 DEFDS_0470 DEFDS_0471 guaA   TRUE 0.973 3.000 0.004 1.000 N NA
 10404602 10404603 DEFDS_0471 DEFDS_0472     TRUE 0.997 0.000 0.620 1.000 N NA
 10404603 10404604 DEFDS_0472 DEFDS_0473     TRUE 0.972 0.000 0.007 NA   NA
 10404604 10404605 DEFDS_0473 DEFDS_0474     TRUE 0.941 23.000 0.005 NA   NA
 10404605 10404606 DEFDS_0474 DEFDS_0475   murB TRUE 0.976 -3.000 0.009 1.000 N NA
 10404608 10404609 DEFDS_0477 DEFDS_0478     FALSE 0.018 327.000 0.000 NA   NA
 10404609 10404610 DEFDS_0478 DEFDS_n01     TRUE 0.793 5.000 0.000 NA   NA
 10404610 10404611 DEFDS_n01 DEFDS_0479     TRUE 0.495 27.000 0.000 NA   NA
 10404611 10404612 DEFDS_0479 DEFDS_0480     TRUE 0.968 -7.000 0.007 1.000 N NA
 10404612 10404613 DEFDS_0480 DEFDS_0481     TRUE 0.993 0.000 0.059 1.000   NA
 10404613 10404614 DEFDS_0481 DEFDS_0482     TRUE 0.997 6.000 0.245 1.000   NA
 10404614 10404615 DEFDS_0482 DEFDS_0483   nadA TRUE 0.979 3.000 0.005 1.000   NA
 10404615 10404616 DEFDS_0483 DEFDS_0484 nadA   FALSE 0.103 69.000 0.000 1.000 N NA
 10404616 10404617 DEFDS_0484 DEFDS_0485   glyA TRUE 0.989 -3.000 0.037 1.000 N NA
 10404617 10404618 DEFDS_0485 DEFDS_0486 glyA   TRUE 0.991 -3.000 0.049 1.000 N NA
 10404618 10404619 DEFDS_0486 DEFDS_0487   rnfC TRUE 0.989 10.000 0.009 1.000 N NA
 10404619 10404620 DEFDS_0487 DEFDS_0488 rnfC rnfD TRUE 0.995 -13.000 0.538 0.064 Y NA
 10404620 10404621 DEFDS_0488 DEFDS_0489 rnfD rnfG TRUE 0.994 -7.000 0.082 0.064 Y NA
 10404621 10404622 DEFDS_0489 DEFDS_0490 rnfG rnfE TRUE 0.996 -3.000 0.286 0.064 Y NA
 10404622 10404623 DEFDS_0490 DEFDS_0491 rnfE rnfA TRUE 0.996 16.000 0.077 0.064 Y NA
 10404623 10404624 DEFDS_0491 DEFDS_0492 rnfA rnfB TRUE 0.996 15.000 0.055 0.064 Y NA
 10404624 10404625 DEFDS_0492 DEFDS_0493 rnfB acuC TRUE 0.990 12.000 0.012 NA N NA
 10404625 10404626 DEFDS_0493 DEFDS_0494 acuC acuB TRUE 0.826 14.000 0.000 NA   NA
 10404627 10404628 DEFDS_0495 DEFDS_0496     TRUE 0.723 0.000 0.000 NA   NA
 10404629 10404630 DEFDS_0497 DEFDS_t10   trn_Arg2 FALSE 0.092 68.000 0.000 NA   NA
 10404631 10404632 DEFDS_0498 DEFDS_0499     FALSE 0.310 38.000 0.000 NA   NA
 10404634 10404635 DEFDS_0501 DEFDS_0502     TRUE 0.952 -3.000 0.003 NA   NA
 10404635 10404636 DEFDS_0502 DEFDS_0503   trxB TRUE 0.991 1.000 0.040 NA   NA
 10404636 10404637 DEFDS_0503 DEFDS_0504 trxB   TRUE 0.994 10.000 0.027 NA   NA
 10404637 10404638 DEFDS_0504 DEFDS_0505     TRUE 0.723 0.000 0.000 NA   NA
 10404638 10404639 DEFDS_0505 DEFDS_0506   nadC TRUE 0.956 -3.000 0.004 NA   NA
 10404639 10404640 DEFDS_0506 DEFDS_0507 nadC valS TRUE 0.985 -6.000 0.020 1.000 N NA
 10404640 10404641 DEFDS_0507 DEFDS_0508 valS   FALSE 0.135 267.000 0.002 NA   NA
 10404641 10404642 DEFDS_0508 DEFDS_0509     FALSE 0.027 175.000 0.000 NA   NA
 10404642 10404643 DEFDS_0509 DEFDS_0510     TRUE 0.977 -34.000 0.118 NA   NA
 10404643 10404644 DEFDS_0510 DEFDS_0511     TRUE 0.966 2.000 0.004 NA N NA
 10404644 10404645 DEFDS_0511 DEFDS_0512     TRUE 0.957 -10.000 0.007 NA   NA
 10404646 10404647 DEFDS_0513 DEFDS_0514     TRUE 0.810 2.000 0.000 1.000   NA
 10404647 10404648 DEFDS_0514 DEFDS_0515     TRUE 0.977 -16.000 0.016 0.044   NA
 10404648 10404649 DEFDS_0515 DEFDS_0516     FALSE 0.172 56.000 0.000 1.000   NA
 10404649 10404650 DEFDS_0516 DEFDS_0517     TRUE 0.995 13.000 0.033 1.000   NA
 10404652 10404653 DEFDS_0519 DEFDS_0520   flgC TRUE 0.998 12.000 0.804 1.000 Y NA
 10404653 10404654 DEFDS_0520 DEFDS_0521 flgC fliE TRUE 0.959 55.000 0.271 0.006 Y NA
 10404654 10404655 DEFDS_0521 DEFDS_0522 fliE fliF TRUE 0.998 16.000 0.180 0.008 Y NA
 10404655 10404656 DEFDS_0522 DEFDS_0523 fliF fliG TRUE 0.998 0.000 0.477 0.008 Y NA
 10404656 10404657 DEFDS_0523 DEFDS_0524 fliG fliH TRUE 0.634 52.000 0.005 NA Y NA
 10404657 10404658 DEFDS_0524 DEFDS_0525 fliH fliI TRUE 0.952 -22.000 0.023 NA Y NA
 10404658 10404659 DEFDS_0525 DEFDS_0526 fliI   TRUE 0.997 6.000 0.129 1.000   NA
 10404659 10404660 DEFDS_0526 DEFDS_0527     TRUE 0.983 -16.000 0.075 NA   NA
 10404660 10404661 DEFDS_0527 DEFDS_0528     TRUE 0.977 -3.000 0.012 NA   NA
 10404661 10404662 DEFDS_0528 DEFDS_0529     TRUE 0.992 -10.000 0.146 1.000   NA
 10404662 10404663 DEFDS_0529 DEFDS_0530   ligA TRUE 0.973 2.000 0.004 1.000 N NA
 10404663 10404664 DEFDS_0530 DEFDS_0531 ligA   TRUE 0.931 -13.000 0.004 NA   NA
 10404664 10404665 DEFDS_0531 DEFDS_0532     FALSE 0.018 347.000 0.000 NA   NA
 10404665 10404666 DEFDS_0532 DEFDS_0533     TRUE 0.989 0.000 0.035 1.000 Y NA
 10404666 10404667 DEFDS_0533 DEFDS_0534   cobO TRUE 0.729 -3.000 0.000 1.000 N NA
 10404667 10404668 DEFDS_0534 DEFDS_0535 cobO   TRUE 0.991 3.000 0.024 1.000 N NA
 10404668 10404669 DEFDS_0535 DEFDS_0536     TRUE 0.990 -3.000 0.048 1.000 Y NA
 10404670 10404671 DEFDS_0547 DEFDS_0548     TRUE 0.568 -13.000 0.000 NA   NA
 10404671 10404672 DEFDS_0548 DEFDS_0549     TRUE 0.996 1.000 0.214 NA   NA
 10404672 10404673 DEFDS_0549 DEFDS_0550     FALSE 0.081 72.000 0.000 NA   NA
 10404673 10404674 DEFDS_0550 DEFDS_0551     TRUE 0.482 -19.000 0.000 NA   NA
 10404674 10404675 DEFDS_0551 DEFDS_0552     TRUE 0.811 15.000 0.000 NA   NA
 10404675 10404676 DEFDS_0552 DEFDS_0553     TRUE 0.905 43.000 0.029 NA   NA
 10404676 10404677 DEFDS_0553 DEFDS_0554     TRUE 0.520 -16.000 0.000 NA   NA
 10404677 10404678 DEFDS_0554 DEFDS_0555     FALSE 0.160 45.000 0.000 NA Y NA
 10404678 10404679 DEFDS_0555 DEFDS_0556     TRUE 0.994 4.000 0.087 NA Y NA
 10404679 10404680 DEFDS_0556 DEFDS_0557     TRUE 0.997 7.000 0.579 NA Y NA
 10404680 10404681 DEFDS_0557 DEFDS_0560     FALSE 0.013 1792.000 0.000 NA N NA
 11428838 10404674   DEFDS_0551     FALSE NA 5259.000 0.000 NA   NA
 11571201 10404674   DEFDS_0551     FALSE NA 5259.000 0.000 NA   NA
 11713593 10404674   DEFDS_0551     FALSE NA 5259.000 0.000 NA   NA
 11428839 10404674   DEFDS_0551     FALSE NA 5287.000 0.000 NA   NA
 11571202 10404674   DEFDS_0551     FALSE NA 5287.000 0.000 NA   NA
 11713594 10404674   DEFDS_0551     FALSE NA 5287.000 0.000 NA   NA
 11428840 10404674   DEFDS_0551     FALSE NA 5324.000 0.000 NA   NA
 11571203 10404674   DEFDS_0551     FALSE NA 5324.000 0.000 NA   NA
 11713595 10404674   DEFDS_0551     FALSE NA 5324.000 0.000 NA   NA
 11428841 10404674   DEFDS_0551     FALSE NA 5354.000 0.000 NA   NA
 11571204 10404674   DEFDS_0551     FALSE NA 5354.000 0.000 NA   NA
 11713596 10404674   DEFDS_0551     FALSE NA 5354.000 0.000 NA   NA
 11428842 10404674   DEFDS_0551     FALSE NA 5392.000 0.000 NA   NA
 11571205 10404674   DEFDS_0551     FALSE NA 5392.000 0.000 NA   NA
 11713597 10404674   DEFDS_0551     FALSE NA 5392.000 0.000 NA   NA
 11428843 10404674   DEFDS_0551     FALSE NA 5422.000 0.000 NA   NA
 11571206 10404674   DEFDS_0551     FALSE NA 5422.000 0.000 NA   NA
 11713598 10404674   DEFDS_0551     FALSE NA 5422.000 0.000 NA   NA
 11428844 10404674   DEFDS_0551     FALSE NA 5458.000 0.000 NA   NA
 11571207 10404674   DEFDS_0551     FALSE NA 5458.000 0.000 NA   NA
 11713599 10404674   DEFDS_0551     FALSE NA 5458.000 0.000 NA   NA
 11428845 10404674   DEFDS_0551     FALSE NA 5488.000 0.000 NA   NA
 11571208 10404674   DEFDS_0551     FALSE NA 5488.000 0.000 NA   NA
 11713600 10404674   DEFDS_0551     FALSE NA 5488.000 0.000 NA   NA
 11428846 10404674   DEFDS_0551     FALSE NA 5524.000 0.000 NA   NA
 11571209 10404674   DEFDS_0551     FALSE NA 5524.000 0.000 NA   NA
 11713601 10404674   DEFDS_0551     FALSE NA 5524.000 0.000 NA   NA
 11428847 10404674   DEFDS_0551     FALSE NA 5554.000 0.000 NA   NA
 11571210 10404674   DEFDS_0551     FALSE NA 5554.000 0.000 NA   NA
 11713602 10404674   DEFDS_0551     FALSE NA 5554.000 0.000 NA   NA
 11428848 10404674   DEFDS_0551     FALSE NA 5591.000 0.000 NA   NA
 11571211 10404674   DEFDS_0551     FALSE NA 5591.000 0.000 NA   NA
 11713603 10404674   DEFDS_0551     FALSE NA 5591.000 0.000 NA   NA
 11428849 10404674   DEFDS_0551     FALSE NA 5621.000 0.000 NA   NA
 11571212 10404674   DEFDS_0551     FALSE NA 5621.000 0.000 NA   NA
 11713604 10404674   DEFDS_0551     FALSE NA 5621.000 0.000 NA   NA
 11428850 10404674   DEFDS_0551     FALSE NA 5657.000 0.000 NA   NA
 11571213 10404674   DEFDS_0551     FALSE NA 5657.000 0.000 NA   NA
 11713605 10404674   DEFDS_0551     FALSE NA 5657.000 0.000 NA   NA
 11428851 10404674   DEFDS_0551     FALSE NA 5687.000 0.000 NA   NA
 11571214 10404674   DEFDS_0551     FALSE NA 5687.000 0.000 NA   NA
 11713606 10404674   DEFDS_0551     FALSE NA 5687.000 0.000 NA   NA
 11428852 10404674   DEFDS_0551     FALSE NA 5723.000 0.000 NA   NA
 11571215 10404674   DEFDS_0551     FALSE NA 5723.000 0.000 NA   NA
 11713607 10404674   DEFDS_0551     FALSE NA 5723.000 0.000 NA   NA
 11428853 10404674   DEFDS_0551     FALSE NA 5753.000 0.000 NA   NA
 11571216 10404674   DEFDS_0551     FALSE NA 5753.000 0.000 NA   NA
 11713608 10404674   DEFDS_0551     FALSE NA 5753.000 0.000 NA   NA
 11428854 10404674   DEFDS_0551     FALSE NA 5790.000 0.000 NA   NA
 11571217 10404674   DEFDS_0551     FALSE NA 5790.000 0.000 NA   NA
 11713609 10404674   DEFDS_0551     FALSE NA 5790.000 0.000 NA   NA
 11428855 10404674   DEFDS_0551     FALSE NA 5820.000 0.000 NA   NA
 11571218 10404674   DEFDS_0551     FALSE NA 5820.000 0.000 NA   NA
 11713610 10404674   DEFDS_0551     FALSE NA 5820.000 0.000 NA   NA
 11428856 10404674   DEFDS_0551     FALSE NA 5858.000 0.000 NA   NA
 11571219 10404674   DEFDS_0551     FALSE NA 5858.000 0.000 NA   NA
 11713611 10404674   DEFDS_0551     FALSE NA 5858.000 0.000 NA   NA
 11428857 10404674   DEFDS_0551     FALSE NA 5888.000 0.000 NA   NA
 11571220 10404674   DEFDS_0551     FALSE NA 5888.000 0.000 NA   NA
 11713612 10404674   DEFDS_0551     FALSE NA 5888.000 0.000 NA   NA
 11428858 10404674   DEFDS_0551     FALSE NA 5927.000 0.000 NA   NA
 11571221 10404674   DEFDS_0551     FALSE NA 5927.000 0.000 NA   NA
 11713613 10404674   DEFDS_0551     FALSE NA 5927.000 0.000 NA   NA
 11428859 10404674   DEFDS_0551     FALSE NA 5957.000 0.000 NA   NA
 11571222 10404674   DEFDS_0551     FALSE NA 5957.000 0.000 NA   NA
 11713614 10404674   DEFDS_0551     FALSE NA 5957.000 0.000 NA   NA
 11428860 10404674   DEFDS_0551     FALSE NA 5994.000 0.000 NA   NA
 11571223 10404674   DEFDS_0551     FALSE NA 5994.000 0.000 NA   NA
 11713615 10404674   DEFDS_0551     FALSE NA 5994.000 0.000 NA   NA
 11428861 10404674   DEFDS_0551     FALSE NA 6024.000 0.000 NA   NA
 11571224 10404674   DEFDS_0551     FALSE NA 6024.000 0.000 NA   NA
 11713616 10404674   DEFDS_0551     FALSE NA 6024.000 0.000 NA   NA
 11428862 10404674   DEFDS_0551     FALSE NA 6061.000 0.000 NA   NA
 11571225 10404674   DEFDS_0551     FALSE NA 6061.000 0.000 NA   NA
 11713617 10404674   DEFDS_0551     FALSE NA 6061.000 0.000 NA   NA
 11428863 10404674   DEFDS_0551     FALSE NA 6091.000 0.000 NA   NA
 11571226 10404674   DEFDS_0551     FALSE NA 6091.000 0.000 NA   NA
 11713618 10404674   DEFDS_0551     FALSE NA 6091.000 0.000 NA   NA
 11428864 10404674   DEFDS_0551     FALSE NA 6129.000 0.000 NA   NA
 11571227 10404674   DEFDS_0551     FALSE NA 6129.000 0.000 NA   NA
 11713619 10404674   DEFDS_0551     FALSE NA 6129.000 0.000 NA   NA
 11428865 10404674   DEFDS_0551     FALSE NA 6159.000 0.000 NA   NA
 11571228 10404674   DEFDS_0551     FALSE NA 6159.000 0.000 NA   NA
 11713620 10404674   DEFDS_0551     FALSE NA 6159.000 0.000 NA   NA
 11428866 10404674   DEFDS_0551     FALSE NA 6197.000 0.000 NA   NA
 11571229 10404674   DEFDS_0551     FALSE NA 6197.000 0.000 NA   NA
 11713621 10404674   DEFDS_0551     FALSE NA 6197.000 0.000 NA   NA
 11428867 10404674   DEFDS_0551     FALSE NA 6227.000 0.000 NA   NA
 11571230 10404674   DEFDS_0551     FALSE NA 6227.000 0.000 NA   NA
 11713622 10404674   DEFDS_0551     FALSE NA 6227.000 0.000 NA   NA
 11428868 10404674   DEFDS_0551     FALSE NA 6264.000 0.000 NA   NA
 11571231 10404674   DEFDS_0551     FALSE NA 6264.000 0.000 NA   NA
 11713623 10404674   DEFDS_0551     FALSE NA 6264.000 0.000 NA   NA
 11428869 10404674   DEFDS_0551     FALSE NA 6294.000 0.000 NA   NA
 11571232 10404674   DEFDS_0551     FALSE NA 6294.000 0.000 NA   NA
 11713624 10404674   DEFDS_0551     FALSE NA 6294.000 0.000 NA   NA
 11428870 10404674   DEFDS_0551     FALSE NA 6333.000 0.000 NA   NA
 11571233 10404674   DEFDS_0551     FALSE NA 6333.000 0.000 NA   NA
 11713625 10404674   DEFDS_0551     FALSE NA 6333.000 0.000 NA   NA
 11428871 10404674   DEFDS_0551     FALSE NA 6363.000 0.000 NA   NA
 11571234 10404674   DEFDS_0551     FALSE NA 6363.000 0.000 NA   NA
 11713626 10404674   DEFDS_0551     FALSE NA 6363.000 0.000 NA   NA
 11428872 10404674   DEFDS_0551     FALSE NA 6399.000 0.000 NA   NA
 11571235 10404674   DEFDS_0551     FALSE NA 6399.000 0.000 NA   NA
 11713627 10404674   DEFDS_0551     FALSE NA 6399.000 0.000 NA   NA
 11428873 10404674   DEFDS_0551     FALSE NA 6429.000 0.000 NA   NA
 11571236 10404674   DEFDS_0551     FALSE NA 6429.000 0.000 NA   NA
 11713628 10404674   DEFDS_0551     FALSE NA 6429.000 0.000 NA   NA
 11428874 10404674   DEFDS_0551     FALSE NA 6466.000 0.000 NA   NA
 11571237 10404674   DEFDS_0551     FALSE NA 6466.000 0.000 NA   NA
 11713629 10404674   DEFDS_0551     FALSE NA 6466.000 0.000 NA   NA
 11428875 10404674   DEFDS_0551     FALSE NA 6496.000 0.000 NA   NA
 11571238 10404674   DEFDS_0551     FALSE NA 6496.000 0.000 NA   NA
 11713630 10404674   DEFDS_0551     FALSE NA 6496.000 0.000 NA   NA
 11428876 10404674   DEFDS_0551     FALSE NA 6531.000 0.000 NA   NA
 11571239 10404674   DEFDS_0551     FALSE NA 6531.000 0.000 NA   NA
 11713631 10404674   DEFDS_0551     FALSE NA 6531.000 0.000 NA   NA
 11428877 10404674   DEFDS_0551     FALSE NA 6561.000 0.000 NA   NA
 11571240 10404674   DEFDS_0551     FALSE NA 6561.000 0.000 NA   NA
 11713632 10404674   DEFDS_0551     FALSE NA 6561.000 0.000 NA   NA
 11428878 10404674   DEFDS_0551     FALSE NA 6597.000 0.000 NA   NA
 11571241 10404674   DEFDS_0551     FALSE NA 6597.000 0.000 NA   NA
 11713633 10404674   DEFDS_0551     FALSE NA 6597.000 0.000 NA   NA
 11428879 10404674   DEFDS_0551     FALSE NA 6627.000 0.000 NA   NA
 11571242 10404674   DEFDS_0551     FALSE NA 6627.000 0.000 NA   NA
 11713634 10404674   DEFDS_0551     FALSE NA 6627.000 0.000 NA   NA
 11428880 10404674   DEFDS_0551     FALSE NA 6663.000 0.000 NA   NA
 11571243 10404674   DEFDS_0551     FALSE NA 6663.000 0.000 NA   NA
 11713635 10404674   DEFDS_0551     FALSE NA 6663.000 0.000 NA   NA
 10404681 10404682 DEFDS_0560 DEFDS_0561     FALSE 0.404 -69.000 0.000 1.000 N NA
 10404682 10404683 DEFDS_0561 DEFDS_0562     TRUE 0.991 -16.000 0.340 1.000   NA
 10404684 10404685 DEFDS_0563 DEFDS_0564 radC   TRUE 0.694 -3.000 0.000 NA   NA
 10404685 10404686 DEFDS_0564 DEFDS_0565     TRUE 0.806 8.000 0.000 NA   NA
 10404687 10404688 DEFDS_0566 DEFDS_0567   pyrF TRUE 0.989 -7.000 0.054 1.000 Y NA
 10404688 10404689 DEFDS_0567 DEFDS_0568 pyrF   FALSE 0.396 -121.000 0.000 1.000 N NA
 10404690 10404691 DEFDS_0569 DEFDS_0570     FALSE 0.021 358.000 0.000 1.000 N NA
 10404691 10404692 DEFDS_0570 DEFDS_0571     TRUE 0.994 4.000 0.017 0.004 Y NA
 10404693 10404694 DEFDS_0572 DEFDS_0573     TRUE 0.952 47.000 0.095 0.054 Y NA
 10404694 10404695 DEFDS_0573 DEFDS_0574     TRUE 0.916 49.000 0.050 1.000   NA
 10404695 10404696 DEFDS_0574 DEFDS_0575     TRUE 0.994 -3.000 0.100 1.000   NA
 10404696 10404697 DEFDS_0575 DEFDS_0576     TRUE 0.987 -40.000 0.500 1.000   NA
 10404697 10404698 DEFDS_0576 DEFDS_0577     TRUE 0.978 -3.000 0.017 NA Y NA
 10404698 10404699 DEFDS_0577 DEFDS_0578     TRUE 0.948 -16.000 0.011 NA N NA
 10404699 10404700 DEFDS_0578 DEFDS_0579   accD TRUE 0.996 0.000 0.383 1.000 N NA
 10404700 10404701 DEFDS_0579 DEFDS_0580 accD   FALSE 0.074 92.000 0.000 1.000   NA
 10404702 10404703 DEFDS_0581 DEFDS_0582 fliD fliS TRUE 0.996 11.000 0.019 0.002 Y NA
 10404703 10404704 DEFDS_0582 DEFDS_0583 fliS   TRUE 0.996 3.000 0.167 NA   NA
 10404704 10404705 DEFDS_0583 DEFDS_0584     FALSE 0.116 60.000 0.000 NA   NA
 10404705 10404706 DEFDS_0584 DEFDS_0585     TRUE 0.793 5.000 0.000 NA   NA
 10404708 10404709 DEFDS_0587 DEFDS_0588   mraW TRUE 0.997 2.000 0.635 NA   NA
 10404709 10404710 DEFDS_0588 DEFDS_0589 mraW   TRUE 0.951 -3.000 0.003 NA   NA
 10404710 10404711 DEFDS_0589 DEFDS_0590   ftsI TRUE 0.989 -10.000 0.077 NA   NA
 10404711 10404712 DEFDS_0590 DEFDS_0591 ftsI murE TRUE 0.958 -22.000 0.022 1.000 Y NA
 10404712 10404713 DEFDS_0591 DEFDS_0592 murE murF TRUE 0.994 -3.000 0.051 0.003 Y NA
 10404713 10404714 DEFDS_0592 DEFDS_0593 murF mraY TRUE 0.990 -10.000 0.037 0.005 Y NA
 10404714 10404715 DEFDS_0593 DEFDS_0594 mraY murD TRUE 0.999 4.000 0.647 0.005 Y NA
 10404715 10404716 DEFDS_0594 DEFDS_0595 murD ftsW TRUE 0.993 -13.000 0.085 0.003 N NA
 10404716 10404717 DEFDS_0595 DEFDS_0596 ftsW murG TRUE 0.983 -3.000 0.017 1.000 N NA
 10404717 10404718 DEFDS_0596 DEFDS_0597 murG murC TRUE 0.996 2.000 0.283 1.000 Y NA
 10404718 10404719 DEFDS_0597 DEFDS_0598 murC ddlA TRUE 0.996 -7.000 0.153 0.005 Y NA
 10404719 10404720 DEFDS_0598 DEFDS_0599 ddlA ftsQ TRUE 0.996 0.000 0.372 NA   NA
 10404720 10404721 DEFDS_0599 DEFDS_0600 ftsQ ftsA TRUE 0.994 -10.000 0.389 NA   NA
 10404721 10404722 DEFDS_0600 DEFDS_0601 ftsA ftsZ TRUE 0.994 22.000 0.460 1.000 Y NA
 10404722 10404723 DEFDS_0601 DEFDS_0602 ftsZ   TRUE 0.978 10.000 0.002 1.000 N NA
 10404723 10404724 DEFDS_0602 DEFDS_0603     FALSE 0.128 66.000 0.000 1.000   NA
 10404724 10404725 DEFDS_0603 DEFDS_0604     TRUE 0.996 1.000 0.286 NA   NA
 10404725 10404726 DEFDS_0604 DEFDS_0605     TRUE 0.969 -10.000 0.014 NA N NA
 10404726 10404727 DEFDS_0605 DEFDS_0606     FALSE 0.087 66.000 0.000 NA N NA
 10404727 10404728 DEFDS_0606 DEFDS_0607     TRUE 0.694 -3.000 0.000 NA   NA
 10404730 10404731 DEFDS_0609 DEFDS_0610     TRUE 0.992 9.000 0.023 NA   NA
 10404731 10404732 DEFDS_0610 DEFDS_0611     TRUE 0.997 4.000 0.250 NA   NA
 10404732 10404733 DEFDS_0611 DEFDS_0612   aroC TRUE 0.966 1.000 0.003 1.000   NA
 10404733 10404734 DEFDS_0612 DEFDS_r01 aroC   FALSE 0.034 132.000 0.000 NA   NA
 10404734 10404735 DEFDS_r01 DEFDS_t11   trn_Ile1 FALSE 0.039 119.000 0.000 NA   NA
 10404735 10404736 DEFDS_t11 DEFDS_t12 trn_Ile1 trn_Ala1 FALSE 0.085 70.000 0.000 NA   NA
 10404736 10404737 DEFDS_t12 DEFDS_r02 trn_Ala1   FALSE 0.151 53.000 0.000 NA   NA
 10404737 10404738 DEFDS_r02 DEFDS_r03     FALSE 0.047 102.000 0.000 NA   NA
 10404740 10404741 DEFDS_0614 DEFDS_0615     TRUE 0.995 -3.000 0.176 1.000 N NA
 10404741 10404742 DEFDS_0615 DEFDS_0616     TRUE 0.997 5.000 0.300 1.000 N NA
 10404742 10404743 DEFDS_0616 DEFDS_0617     TRUE 0.996 0.000 0.200 1.000   NA
 10404744 10404745 DEFDS_0618 DEFDS_0619   aspC TRUE 0.746 1.000 0.000 1.000 Y NA
 10404745 10404746 DEFDS_0619 DEFDS_0621 aspC   FALSE 0.310 38.000 0.000 NA   NA
 10404746 10404747 DEFDS_0621 DEFDS_0622     TRUE 0.743 1.000 0.000 NA   NA
 10404749 10404750 DEFDS_0624 DEFDS_0625     TRUE 0.979 3.000 0.008 NA N NA
 10404750 10404751 DEFDS_0625 DEFDS_0626     TRUE 0.991 -13.000 0.067 0.035   NA
 10404751 10404752 DEFDS_0626 DEFDS_0627     TRUE 0.733 -7.000 0.000 1.000   NA
 10404753 10404754 DEFDS_0628 DEFDS_0629     TRUE 0.982 -9.000 0.025 NA   NA
 10404754 10404755 DEFDS_0629 DEFDS_0630     TRUE 0.991 -3.000 0.058 NA   NA
 10404755 10404756 DEFDS_0630 DEFDS_0631     TRUE 0.969 -3.000 0.007 NA   NA
 10404756 10404757 DEFDS_0631 DEFDS_0632     TRUE 0.998 2.000 0.631 0.038   NA
 10404757 10404758 DEFDS_0632 DEFDS_0633     FALSE 0.063 101.000 0.000 1.000   NA
 10404758 10404759 DEFDS_0633 DEFDS_0634     TRUE 0.995 6.000 0.021 0.005   NA
 10404759 10404760 DEFDS_0634 DEFDS_0635     TRUE 0.998 2.000 0.822 0.005 Y NA
 10404760 10404761 DEFDS_0635 DEFDS_0636     TRUE 0.998 -3.000 0.797 0.005 Y NA
 10404761 10404762 DEFDS_0636 DEFDS_0637     TRUE 0.844 10.000 0.000 1.000 Y NA
 10404762 10404763 DEFDS_0637 DEFDS_0638     FALSE 0.033 164.000 0.000 1.000 N NA
 10404763 10404764 DEFDS_0638 DEFDS_0639   glyQ FALSE 0.027 223.000 0.000 1.000 N NA
 10404764 10404765 DEFDS_0639 DEFDS_0640 glyQ   FALSE 0.032 172.000 0.000 1.000 N NA
 10404766 10404767 DEFDS_0642 DEFDS_0643     TRUE 0.978 0.000 0.011 NA N NA
 10404767 10404768 DEFDS_0643 DEFDS_0644     TRUE 0.994 4.000 0.052 NA   NA
 10404768 10404769 DEFDS_0644 DEFDS_0645     TRUE 0.966 -19.000 0.026 NA   NA
 10404769 10404770 DEFDS_0645 DEFDS_0646     TRUE 0.987 -10.000 0.059 NA   NA
 10404770 10404771 DEFDS_0646 DEFDS_0647     TRUE 0.976 -39.000 0.092 1.000 N NA
 10404771 10404772 DEFDS_0647 DEFDS_0648   ispB TRUE 0.971 -3.000 0.007 1.000 N NA
 10404773 10404774 DEFDS_0649 DEFDS_0650     TRUE 0.995 16.000 0.080 NA   NA
 10404774 10404775 DEFDS_0650 DEFDS_0651     TRUE 0.715 1.000 0.000 NA N NA
 10404775 10404776 DEFDS_0651 DEFDS_t13   trn_Gly3 FALSE 0.333 37.000 0.000 NA   NA
 10404776 10404777 DEFDS_t13 DEFDS_0652 trn_Gly3   FALSE 0.016 752.000 0.000 NA   NA
 10404779 10404780 DEFDS_0654 DEFDS_0655     TRUE 0.998 15.000 0.581 1.000 Y NA
 10404780 10404781 DEFDS_0655 DEFDS_0656     TRUE 0.998 0.000 0.783 0.022 Y NA
 10404781 10404782 DEFDS_0656 DEFDS_0657     TRUE 0.997 4.000 0.333 1.000 Y NA
 10404782 10404783 DEFDS_0657 DEFDS_0658     TRUE 0.996 -7.000 0.280 0.021 Y NA
 10404784 10404785 DEFDS_t14 DEFDS_0659 trn_Thr1   FALSE 0.020 263.000 0.000 NA   NA
 10404785 10404786 DEFDS_0659 DEFDS_0660     TRUE 0.965 -7.000 0.005 1.000 N NA
 10404786 10404787 DEFDS_0660 DEFDS_0661     TRUE 0.996 -7.000 0.600 1.000 Y NA
 10404787 10404788 DEFDS_0661 DEFDS_0662     TRUE 0.997 5.000 0.364 1.000 N NA
 10404788 10404789 DEFDS_0662 DEFDS_0663   uvrB FALSE 0.177 231.000 0.003 1.000 N NA
 10404791 10404792 DEFDS_0665 DEFDS_0666     FALSE 0.362 -70.000 0.000 NA   NA
 10404793 10404794 DEFDS_0667 DEFDS_0668     TRUE 0.977 30.000 0.073 NA   NA
 10404794 10404795 DEFDS_0668 DEFDS_0669     TRUE 0.782 16.000 0.000 NA   NA
 10404795 10404796 DEFDS_0669 DEFDS_0670     FALSE 0.051 97.000 0.000 NA   NA
 10404796 10404797 DEFDS_0670 DEFDS_0671     TRUE 0.998 10.000 0.240 0.053 Y NA
 10404797 10404798 DEFDS_0671 DEFDS_0672     TRUE 0.997 10.000 0.182 NA N NA
 10404798 10404799 DEFDS_0672 DEFDS_0673     TRUE 0.785 4.000 0.000 NA   NA
 10404799 10404800 DEFDS_0673 DEFDS_0674     FALSE 0.096 75.000 0.000 1.000   NA
 10404800 10404801 DEFDS_0674 DEFDS_0675     TRUE 0.997 -3.000 0.250 0.053   NA
 10404801 10404802 DEFDS_0675 DEFDS_0676     TRUE 0.998 -3.000 0.583 0.024   NA
 10404802 10404803 DEFDS_0676 DEFDS_0677     TRUE 0.668 -21.000 0.000 0.053   NA
 10404804 10404805 DEFDS_t15 DEFDS_0678 trn_Leu3   FALSE 0.202 46.000 0.000 NA   NA
 10404805 10404806 DEFDS_0678 DEFDS_0679     TRUE 0.911 14.000 0.000 0.049 N NA
 10404809 10404810 DEFDS_0682 DEFDS_0683     TRUE 0.903 55.000 0.134 NA Y NA
 10404810 10404811 DEFDS_0683 DEFDS_0684     TRUE 0.996 0.000 0.882 NA Y NA
 10404812 10404813 DEFDS_0685 DEFDS_0686 sdhB sdhA TRUE 0.998 18.000 0.604 0.002 Y NA
 10404813 10404814 DEFDS_0686 DEFDS_0687 sdhA sdhD TRUE 0.996 25.000 0.705 0.002   NA
 10404814 10404815 DEFDS_0687 DEFDS_0688 sdhD sdhC TRUE 0.999 13.000 0.157 0.002   NA
 10404816 10404817 DEFDS_0689 DEFDS_0690     FALSE 0.034 131.000 0.000 NA   NA
 10404818 10404819 DEFDS_0691 DEFDS_0692     TRUE 0.996 -3.000 0.667 NA   NA
 10404819 10404820 DEFDS_0692 DEFDS_0693     FALSE 0.099 74.000 0.000 1.000   NA
 10404820 10404821 DEFDS_0693 DEFDS_0694     TRUE 0.864 14.000 0.000 1.000   NA
 10404821 10404822 DEFDS_0694 DEFDS_0695     FALSE 0.089 78.000 0.000 1.000   NA
 10404822 10404823 DEFDS_0695 DEFDS_0696     TRUE 0.995 -6.000 0.400 NA   NA
 10404823 10404824 DEFDS_0696 DEFDS_0697     FALSE 0.085 70.000 0.000 NA   NA
 10404825 10404826 DEFDS_0698 DEFDS_0699     TRUE 0.935 13.000 0.000 0.013   NA
 10404826 10404827 DEFDS_0699 DEFDS_0700     TRUE 0.818 -7.000 0.000 0.018 Y NA
 10404827 10404828 DEFDS_0700 DEFDS_0701     TRUE 0.996 -7.000 0.182 0.018 Y NA
 10404828 10404829 DEFDS_0701 DEFDS_0702     TRUE 0.623 -10.000 0.000 1.000 Y NA
 10404829 10404830 DEFDS_0702 DEFDS_0703     TRUE 0.784 16.000 0.000 1.000 Y NA
 10404831 10404832 DEFDS_0704 DEFDS_0705     FALSE 0.039 154.000 0.000 1.000   NA
 10404833 10404834 DEFDS_0706 DEFDS_0707     FALSE 0.050 113.000 0.000 1.000 N NA
 10404836 10404837 DEFDS_t17 DEFDS_t18 trn_Ser2 trn_Ser3 TRUE 0.842 12.000 0.000 NA   NA
 10404838 10404839 DEFDS_0708 DEFDS_0709     TRUE 0.723 0.000 0.000 NA   NA
 10404839 10404840 DEFDS_0709 DEFDS_0710     FALSE 0.025 188.000 0.000 NA   NA
 10404840 10404841 DEFDS_0710 DEFDS_0711     FALSE 0.038 120.000 0.000 NA   NA
 10404843 10404844 DEFDS_0713 DEFDS_0714     TRUE 0.885 2.000 0.000 0.046   NA
 10404844 10404845 DEFDS_0714 DEFDS_0715     TRUE 0.723 18.000 0.000 NA   NA
 10404846 10404847 DEFDS_0716 DEFDS_0717     TRUE 0.996 16.000 0.143 NA   NA
 10404847 10404848 DEFDS_0717 DEFDS_0719     FALSE 0.016 697.000 0.000 NA   NA
 10404849 10404850 DEFDS_0720 DEFDS_0721     FALSE 0.017 418.000 0.000 NA   NA
 10404850 10404851 DEFDS_0721 DEFDS_0722     TRUE 0.887 5.000 0.000 0.082 N NA
 10404851 10404852 DEFDS_0722 DEFDS_0723     TRUE 0.995 2.000 0.107 1.000 Y NA
 10404852 10404853 DEFDS_0723 DEFDS_0724     TRUE 0.858 9.000 0.000 1.000   NA
 10404855 10404856 DEFDS_0726 DEFDS_0727     TRUE 0.735 2.000 0.000 NA N NA
 10404856 10404857 DEFDS_0727 DEFDS_0728     FALSE 0.018 335.000 0.000 NA   NA
 10404857 10404858 DEFDS_0728 DEFDS_0729     TRUE 0.694 -3.000 0.000 NA   NA
 10404858 10404859 DEFDS_0729 DEFDS_0730     TRUE 0.637 -13.000 0.000 1.000   NA
 10404859 10404860 DEFDS_0730 DEFDS_0731     FALSE 0.016 746.000 0.000 NA   NA
 10404861 10404862 DEFDS_0732 DEFDS_0733     FALSE 0.030 148.000 0.000 NA   NA
 10404862 10404863 DEFDS_0733 DEFDS_0734     FALSE 0.034 130.000 0.000 NA   NA
 10404863 10404864 DEFDS_0734 DEFDS_0735     FALSE 0.022 241.000 0.000 NA   NA
 10404864 10404865 DEFDS_0735 DEFDS_0736   recC FALSE 0.413 34.000 0.000 1.000 N NA
 10404865 10404866 DEFDS_0736 DEFDS_0737 recC recB TRUE 0.791 -13.000 0.000 0.001 Y NA
 10404866 10404867 DEFDS_0737 DEFDS_0738 recB recD TRUE 0.991 0.000 0.015 0.001 Y NA
 10404867 10404868 DEFDS_0738 DEFDS_0739 recD   FALSE 0.071 86.000 0.000 1.000 N NA
 10404870 10404871 DEFDS_0741 DEFDS_0742     TRUE 0.996 19.000 0.500 NA   NA
 10404871 10404872 DEFDS_0742 DEFDS_0743     TRUE 0.694 -3.000 0.000 NA   NA
 10404872 10404873 DEFDS_0743 DEFDS_0744     TRUE 0.743 1.000 0.000 NA   NA
 10404873 10404874 DEFDS_0744 DEFDS_0745     TRUE 0.782 16.000 0.000 NA   NA
 10404874 10404875 DEFDS_0745 DEFDS_0746     TRUE 0.997 3.000 0.571 NA   NA
 10404875 10404876 DEFDS_0746 DEFDS_0747     FALSE 0.070 76.000 0.000 NA   NA
 10404876 10404877 DEFDS_0747 DEFDS_0748     TRUE 0.836 13.000 0.000 NA   NA
 10404877 10404878 DEFDS_0748 DEFDS_0749     FALSE 0.398 -34.000 0.000 NA   NA
 10404878 10404879 DEFDS_0749 DEFDS_0750     TRUE 0.826 14.000 0.000 NA   NA
 10404879 10404880 DEFDS_0750 DEFDS_0751     TRUE 0.761 2.000 0.000 NA   NA
 10404880 10404881 DEFDS_0751 DEFDS_0752     TRUE 0.676 -7.000 0.000 1.000 Y NA
 10404881 10404882 DEFDS_0752 DEFDS_0754     FALSE 0.016 745.000 0.000 NA   NA
 10404882 10404883 DEFDS_0754 DEFDS_0755     TRUE 0.557 24.000 0.000 NA   NA
 10404883 10404884 DEFDS_0755 DEFDS_0756     FALSE 0.284 39.000 0.000 NA   NA
 10404884 10404885 DEFDS_0756 DEFDS_0757     TRUE 0.775 3.000 0.000 NA   NA
 10404885 10404886 DEFDS_0757 DEFDS_0758     TRUE 0.983 -82.000 0.500 NA   NA
 10404886 10404887 DEFDS_0758 DEFDS_0759     FALSE 0.378 -43.000 0.000 NA   NA
 10404887 10404888 DEFDS_0759 DEFDS_0760     TRUE 0.441 30.000 0.000 NA   NA
 10404890 10404891 DEFDS_0762 DEFDS_0763     TRUE 0.998 5.000 0.600 NA   NA
 10404891 10404892 DEFDS_0763 DEFDS_0764     TRUE 0.994 0.000 0.100 1.000 Y NA
 10404893 10404894 DEFDS_0765 DEFDS_0766 argE   TRUE 0.993 -3.000 0.069 1.000   NA
 10404895 10404896 DEFDS_0767 DEFDS_0768   hyuA TRUE 0.994 0.000 0.111 NA   NA
 10404896 10404897 DEFDS_0768 DEFDS_0769 hyuA hyuB TRUE 0.999 10.000 0.148 0.001 Y NA
 10404897 10404898 DEFDS_0769 DEFDS_0770 hyuB   TRUE 0.948 50.000 0.364 NA N NA
 10404898 10404899 DEFDS_0770 DEFDS_0771     TRUE 0.996 -3.000 0.818 NA N NA
 10404899 10404900 DEFDS_0771 DEFDS_0772     TRUE 0.996 -3.000 0.818 NA Y NA
 10404901 10404902 DEFDS_0773 DEFDS_0774 ggt   TRUE 0.995 -3.000 0.182 1.000   NA
 10404902 10404903 DEFDS_0774 DEFDS_0775     TRUE 0.443 34.000 0.000 1.000   NA
 10404906 10404907 DEFDS_0778 DEFDS_0779     FALSE 0.024 332.000 0.000 1.000   NA
 10404907 10404908 DEFDS_0779 DEFDS_0780     TRUE 0.994 1.000 0.075 NA   NA
 10404908 10404909 DEFDS_0780 DEFDS_0781     TRUE 0.990 -3.000 0.052 NA   NA
 10404909 10404910 DEFDS_0781 DEFDS_0782     TRUE 0.995 -3.000 0.052 0.002 Y NA
 10404910 10404911 DEFDS_0782 DEFDS_0783     TRUE 0.993 -10.000 0.188 1.000   NA
 10404911 10404912 DEFDS_0783 DEFDS_0784     FALSE 0.075 90.000 0.000 1.000   NA
 10404913 10404914 DEFDS_0785 DEFDS_t19   trn_Phe FALSE 0.018 338.000 0.000 NA   NA
 10404914 10404915 DEFDS_t19 DEFDS_0786 trn_Phe   FALSE 0.095 67.000 0.000 NA   NA
 10404915 10404916 DEFDS_0786 DEFDS_0787     FALSE 0.031 177.000 0.000 1.000 N NA
 10404916 10404917 DEFDS_0787 DEFDS_0788     TRUE 0.709 -7.000 0.000 1.000 N NA
 10404918 10404919 DEFDS_0789 DEFDS_0790   leuS FALSE 0.111 62.000 0.000 NA   NA
 10404919 10404920 DEFDS_0790 DEFDS_0791 leuS   TRUE 0.956 -3.000 0.004 NA   NA
 10404920 10404921 DEFDS_0791 DEFDS_0792     TRUE 0.867 -37.000 0.004 NA   NA
 10404921 10404922 DEFDS_0792 DEFDS_0793     FALSE 0.030 227.000 0.000 1.000   NA
 10404922 10404923 DEFDS_0793 DEFDS_0794     TRUE 0.793 5.000 0.000 NA   NA
 10404923 10404924 DEFDS_0794 DEFDS_0795     TRUE 0.842 10.000 0.000 NA   NA
 10404925 10404926 DEFDS_0796 DEFDS_0797     FALSE 0.027 264.000 0.000 1.000   NA
 10404926 10404927 DEFDS_0797 DEFDS_0798     TRUE 0.983 15.000 0.007 NA   NA
 10404927 10404928 DEFDS_0798 DEFDS_0799     TRUE 0.849 11.000 0.000 NA   NA
 10404928 10404929 DEFDS_0799 DEFDS_0800     TRUE 0.988 -3.000 0.029 1.000 N NA
 10404929 10404930 DEFDS_0800 DEFDS_0801     TRUE 0.912 -49.000 0.008 1.000   NA
 10404930 10404931 DEFDS_0801 DEFDS_0802     TRUE 0.933 -15.000 0.004 1.000   NA
 10404931 10404932 DEFDS_0802 DEFDS_0803     TRUE 0.984 -13.000 0.059 NA   NA
 10404932 10404933 DEFDS_0803 DEFDS_0804     FALSE 0.025 191.000 0.000 NA   NA
 10404933 10404934 DEFDS_0804 DEFDS_0805     TRUE 0.998 4.000 0.214 0.005 Y NA
 10404934 10404935 DEFDS_0805 DEFDS_0806     TRUE 0.944 29.000 0.013 NA   NA
 10404935 10404936 DEFDS_0806 DEFDS_0807     TRUE 0.990 -10.000 0.105 NA   NA
 10404937 10404938 DEFDS_0808 DEFDS_0809   hemA TRUE 0.996 2.000 0.112 1.000   NA
 10404938 10404939 DEFDS_0809 DEFDS_0810 hemA hemC TRUE 0.998 3.000 0.178 0.002 Y NA
 10404939 10404940 DEFDS_0810 DEFDS_0811 hemC hemD TRUE 0.979 -7.000 0.005 0.002 Y NA
 10404940 10404941 DEFDS_0811 DEFDS_0812 hemD hemB TRUE 0.990 2.000 0.009 0.002 Y NA
 10404941 10404942 DEFDS_0812 DEFDS_0813 hemB   TRUE 0.980 0.000 0.009 1.000   NA
 10404944 10404945 DEFDS_0815 DEFDS_0818     FALSE 0.021 742.000 0.000 1.000   NA
 10404945 10404946 DEFDS_0818 DEFDS_n02     TRUE 0.749 17.000 0.000 NA   NA
 10404950 10404951 DEFDS_0822 DEFDS_0823     FALSE 0.031 214.000 0.000 1.000   NA
 10404951 10404952 DEFDS_0823 DEFDS_0824     TRUE 0.997 0.000 0.400 1.000   NA
 10404952 10404953 DEFDS_0824 DEFDS_0825     TRUE 0.709 -7.000 0.000 1.000 N NA
 10404953 10404954 DEFDS_0825 DEFDS_0826     TRUE 0.729 -3.000 0.000 1.000 N NA
 10404954 10404955 DEFDS_0826 DEFDS_0827     TRUE 0.987 -28.000 0.400 1.000 N NA
 10404955 10404956 DEFDS_0827 DEFDS_0828     TRUE 0.978 -3.000 0.010 1.000 N NA
 10404956 10404957 DEFDS_0828 DEFDS_0829     FALSE 0.174 53.000 0.000 1.000 N NA
 10404957 10404958 DEFDS_0829 DEFDS_0830     FALSE 0.025 251.000 0.000 1.000 N NA
 10404958 10404959 DEFDS_0830 DEFDS_0831     FALSE 0.084 83.000 0.000 1.000   NA
 10404959 10404960 DEFDS_0831 DEFDS_0832     FALSE 0.365 50.000 0.000 0.015   NA
 10404960 10404961 DEFDS_0832 DEFDS_0833     TRUE 0.483 -30.000 0.000 1.000   NA
 10404961 10404962 DEFDS_0833 DEFDS_0834     TRUE 0.764 2.000 0.000 1.000 Y NA
 10404962 10404963 DEFDS_0834 DEFDS_0835     FALSE 0.092 58.000 0.000 NA Y NA
 10404964 10404965 DEFDS_0836 DEFDS_0837     TRUE 0.749 17.000 0.000 NA   NA
 10404965 10404966 DEFDS_0837 DEFDS_0838   cysS TRUE 0.955 -3.000 0.003 1.000 N NA
 10404966 10404967 DEFDS_0838 DEFDS_0839 cysS   TRUE 0.512 64.000 0.002 1.000   NA
 10404967 10404968 DEFDS_0839 DEFDS_0840   pyrC TRUE 0.810 2.000 0.000 1.000   NA
 10404968 10404969 DEFDS_0840 DEFDS_0841 pyrC pyrB TRUE 0.997 2.000 0.452 1.000 Y NA
 10404969 10404970 DEFDS_0841 DEFDS_0842 pyrB pyrR TRUE 0.997 8.000 0.247 1.000 Y NA
 10404971 10404972 DEFDS_0843 DEFDS_0844 panB panC TRUE 0.998 3.000 0.395 0.001 Y NA
 10404972 10404973 DEFDS_0844 DEFDS_0845 panC panD TRUE 0.997 2.000 0.342 1.000 Y NA
 10404973 10404974 DEFDS_0845 DEFDS_0846 panD   FALSE 0.040 131.000 0.000 1.000 N NA
 10404974 10404975 DEFDS_0846 DEFDS_0847     FALSE 0.156 56.000 0.000 1.000 N NA
 10404976 10404977 DEFDS_0848 DEFDS_0849     TRUE 0.760 4.000 0.000 NA N NA
 10404977 10404978 DEFDS_0849 DEFDS_0850     FALSE 0.310 38.000 0.000 NA   NA
 10404978 10404979 DEFDS_0850 DEFDS_0851     FALSE 0.068 247.000 0.000 0.002   NA
 10404979 10404980 DEFDS_0851 DEFDS_0852     TRUE 0.826 14.000 0.000 NA   NA
 10404980 10404981 DEFDS_0852 DEFDS_0853     TRUE 0.995 19.000 0.286 NA   NA
 10404981 10404982 DEFDS_0853 DEFDS_0854   acs TRUE 0.991 31.000 0.375 0.048 N NA
 10404982 10404983 DEFDS_0854 DEFDS_0855 acs nfi FALSE 0.143 58.000 0.000 1.000 N NA
 10404983 10404984 DEFDS_0855 DEFDS_0856 nfi   TRUE 0.793 5.000 0.000 NA   NA
 10404984 10404985 DEFDS_0856 DEFDS_0857   serA TRUE 0.965 -3.000 0.005 NA   NA
 10404985 10404986 DEFDS_0857 DEFDS_0858 serA   FALSE 0.076 74.000 0.000 NA   NA
 10404986 10404987 DEFDS_0858 DEFDS_0859     TRUE 0.997 2.000 0.667 NA   NA
 10404987 10404988 DEFDS_0859 DEFDS_0860     TRUE 0.694 -3.000 0.000 NA   NA
 10404988 10404989 DEFDS_0860 DEFDS_0861     TRUE 0.962 -25.000 0.029 NA   NA
 10404989 10404990 DEFDS_0861 DEFDS_0862     TRUE 0.723 0.000 0.000 NA   NA
 10404990 10404991 DEFDS_0862 DEFDS_0863     TRUE 0.723 0.000 0.000 NA   NA
 10404991 10404992 DEFDS_0863 DEFDS_0864     FALSE 0.036 127.000 0.000 NA   NA
 10404992 10404993 DEFDS_0864 DEFDS_0865     TRUE 0.920 57.000 0.200 NA   NA
 10404993 10404994 DEFDS_0865 DEFDS_0866     FALSE 0.164 51.000 0.000 1.000 Y NA
 10404996 10404997 DEFDS_0867 DEFDS_0868     FALSE 0.055 94.000 0.000 NA   NA
 10404997 10404998 DEFDS_0868 DEFDS_0869     FALSE 0.066 79.000 0.000 NA   NA
 10405000 10405001 DEFDS_0871 DEFDS_0872     TRUE 0.998 2.000 0.250 0.044   NA
 10405003 10405004 DEFDS_0874 DEFDS_0875     FALSE 0.021 253.000 0.000 NA   NA
 10405004 10405005 DEFDS_0875 DEFDS_0876     FALSE 0.054 115.000 0.000 1.000   NA
 10405005 10405006 DEFDS_0876 DEFDS_0877     FALSE 0.049 99.000 0.000 NA   NA
 10405006 10405007 DEFDS_0877 DEFDS_0878     FALSE 0.044 110.000 0.000 NA   NA
 10405007 10405008 DEFDS_0878 DEFDS_0879     TRUE 0.836 13.000 0.000 NA   NA
 10405010 10405011 DEFDS_0881 DEFDS_0882     TRUE 0.620 -10.000 0.000 NA   NA
 10405011 10405012 DEFDS_0882 DEFDS_0883     FALSE 0.023 224.000 0.000 NA   NA
 10405012 10405013 DEFDS_0883 DEFDS_0884     TRUE 0.996 3.000 0.133 NA   NA
 10405013 10405014 DEFDS_0884 DEFDS_0885     FALSE 0.360 35.000 0.000 NA   NA
 10405014 10405015 DEFDS_0885 DEFDS_0886     TRUE 0.842 10.000 0.000 NA   NA
 10405016 10405017 DEFDS_0887 DEFDS_0888     TRUE 0.605 25.000 0.000 1.000   NA
 10405018 10405019 DEFDS_0889 DEFDS_0890     TRUE 0.688 19.000 0.000 NA   NA
 10405020 10405021 DEFDS_0891 DEFDS_0892     TRUE 0.694 -3.000 0.000 NA   NA
 10405022 10405023 DEFDS_0894 DEFDS_0895     FALSE 0.051 97.000 0.000 NA   NA
 10405023 10405024 DEFDS_0895 DEFDS_0896     TRUE 0.761 2.000 0.000 NA   NA
 10405024 10405025 DEFDS_0896 DEFDS_0897     FALSE 0.037 121.000 0.000 NA   NA
 10405025 10405026 DEFDS_0897 DEFDS_0898     FALSE 0.021 261.000 0.000 NA   NA
 10405026 10405027 DEFDS_0898 DEFDS_0899     TRUE 0.619 -6.000 0.000 NA Y NA
 10405027 10405028 DEFDS_0899 DEFDS_0900     FALSE 0.021 206.000 0.000 NA N NA
 10405029 10405030 DEFDS_0901 DEFDS_0902     FALSE 0.020 283.000 0.000 NA   NA
 10405031 10405032 DEFDS_0903 DEFDS_0904     TRUE 0.723 18.000 0.000 NA   NA
 10405033 10405034 DEFDS_0905 DEFDS_0906     TRUE 0.756 0.000 0.000 1.000 N NA
 10405034 10405035 DEFDS_0906 DEFDS_0907     FALSE 0.052 118.000 0.000 1.000   NA
 10405036 10405037 DEFDS_0908 DEFDS_0909     TRUE 0.605 25.000 0.000 1.000   NA
 10405037 10405038 DEFDS_0909 DEFDS_0910     FALSE 0.073 75.000 0.000 NA   NA
 10405038 10405039 DEFDS_0910 DEFDS_0912     TRUE 0.811 15.000 0.000 NA   NA
 10405040 10405041 DEFDS_0913 DEFDS_0914     FALSE 0.172 50.000 0.000 NA   NA
 10405042 10405043 DEFDS_0915 DEFDS_0916     TRUE 0.993 -10.000 0.049 0.001 Y NA
 10405044 10405045 DEFDS_0917 DEFDS_0918   icd FALSE 0.045 386.000 0.000 0.002 Y NA
 10405045 10405046 DEFDS_0918 DEFDS_0919 icd mdh TRUE 0.686 78.000 0.025 1.000 Y NA
 10405046 10405047 DEFDS_0919 DEFDS_0920 mdh sucC TRUE 0.502 129.000 0.022 1.000 Y NA
 10405047 10405048 DEFDS_0920 DEFDS_0921 sucC sucD TRUE 0.997 -3.000 0.169 0.001 Y NA
 10405048 10405049 DEFDS_0921 DEFDS_0922 sucD   TRUE 0.991 16.000 0.019 1.000   NA
 10405049 10405050 DEFDS_0922 DEFDS_0923     TRUE 0.998 18.000 0.469 0.004   NA
 10405050 10405051 DEFDS_0923 DEFDS_0924     TRUE 0.998 1.000 0.771 0.004 Y NA
 10405051 10405052 DEFDS_0924 DEFDS_0925     TRUE 0.998 3.000 0.505 0.004 Y NA
 10405052 10405053 DEFDS_0925 DEFDS_0926     TRUE 0.669 54.000 0.005 NA   NA
 10405055 10405056 DEFDS_0928 DEFDS_0929     TRUE 0.936 40.000 0.047 1.000 Y NA
 10405056 10405057 DEFDS_0929 DEFDS_0930     TRUE 0.996 0.000 0.163 0.021 Y NA
 10405057 10405058 DEFDS_0930 DEFDS_0931     TRUE 0.992 -3.000 0.069 1.000 Y NA
 10405058 10405059 DEFDS_0931 DEFDS_0932     TRUE 0.699 -16.000 0.000 0.020 Y NA
 10405059 10405060 DEFDS_0932 DEFDS_0933   hutC TRUE 0.729 -3.000 0.000 1.000 N NA
 10405060 10405061 DEFDS_0933 DEFDS_0934 hutC hutH TRUE 0.649 22.000 0.000 1.000 N NA
 10405061 10405062 DEFDS_0934 DEFDS_0935 hutH hutU TRUE 0.993 -22.000 0.315 0.001 Y NA
 10405062 10405063 DEFDS_0935 DEFDS_0936 hutU hutG TRUE 0.998 7.000 0.114 0.001 Y NA
 10405063 10405064 DEFDS_0936 DEFDS_0937 hutG hutI TRUE 0.989 -15.000 0.171 1.000 N NA
 10405064 10405065 DEFDS_0937 DEFDS_0938 hutI   FALSE 0.401 37.000 0.000 1.000   NA
 10405065 10405066 DEFDS_0938 DEFDS_0939     FALSE 0.063 84.000 0.000 NA   NA
 10405066 10405067 DEFDS_0939 DEFDS_0940     TRUE 0.964 -3.000 0.005 NA   NA
 10405067 10405068 DEFDS_0940 DEFDS_0941     TRUE 0.849 11.000 0.000 NA   NA
 10405069 10405070 DEFDS_0942 DEFDS_0943     TRUE 0.993 -7.000 0.120 1.000 N NA
 10405070 10405071 DEFDS_0943 DEFDS_0944   dxs TRUE 0.988 -18.000 0.189 1.000 N NA
 10405071 10405072 DEFDS_0944 DEFDS_0945 dxs   TRUE 0.974 0.000 0.007 1.000 Y NA
 10405072 10405073 DEFDS_0945 DEFDS_0946   xseB TRUE 0.960 -7.000 0.005 1.000 N NA
 10405073 10405074 DEFDS_0946 DEFDS_0947 xseB   TRUE 0.947 -7.000 0.002 1.000 N NA
 10405074 10405075 DEFDS_0947 DEFDS_0948     TRUE 0.855 -39.000 0.002 1.000   NA
 10405075 10405076 DEFDS_0948 DEFDS_0949     TRUE 0.955 -3.000 0.002 1.000   NA
 10405076 10405077 DEFDS_0949 DEFDS_0950     TRUE 0.676 -7.000 0.000 1.000 Y NA
 10405077 10405078 DEFDS_0950 DEFDS_0951     FALSE 0.396 -37.000 0.000 1.000 Y NA
 10405078 10405079 DEFDS_0951 DEFDS_0952   pilZ TRUE 0.980 21.000 0.026 NA N NA
 10405079 10405080 DEFDS_0952 DEFDS_0953 pilZ   TRUE 0.990 3.000 0.026 NA N NA
 10405080 10405081 DEFDS_0953 DEFDS_0954     TRUE 0.867 2.000 0.000 0.025 Y NA
 10405081 10405082 DEFDS_0954 DEFDS_0955     FALSE 0.279 43.000 0.000 1.000   NA
 10405082 10405083 DEFDS_0955 DEFDS_0956     FALSE 0.024 344.000 0.000 1.000   NA
 10405083 10405084 DEFDS_0956 DEFDS_0957     TRUE 0.984 -16.000 0.061 1.000   NA
 10405084 10405085 DEFDS_0957 DEFDS_0958     TRUE 0.996 4.000 0.091 1.000 N NA
 10405085 10405086 DEFDS_0958 DEFDS_0959     TRUE 0.996 -7.000 0.200 0.020 Y NA
 10405086 10405087 DEFDS_0959 DEFDS_0960     TRUE 0.991 -13.000 0.227 1.000 Y NA
 10405087 10405088 DEFDS_0960 DEFDS_0961     TRUE 0.996 -3.000 0.182 0.021 Y NA
 10405088 10405089 DEFDS_0961 DEFDS_0962     TRUE 0.989 27.000 0.333 1.000 Y NA
 10405089 10405090 DEFDS_0962 DEFDS_0963     TRUE 0.979 -22.000 0.061 1.000   NA
 10405090 10405091 DEFDS_0963 DEFDS_0964     TRUE 0.999 10.000 0.233 0.047   NA
 10405091 10405092 DEFDS_0964 DEFDS_0965     FALSE 0.074 84.000 0.000 1.000 N NA
 10405092 10405093 DEFDS_0965 DEFDS_0966   hup TRUE 0.988 32.000 0.750 1.000 N NA
 10405093 10405094 DEFDS_0966 DEFDS_0967 hup speB FALSE 0.111 67.000 0.000 1.000 N NA
 10405094 10405095 DEFDS_0967 DEFDS_0968 speB speE TRUE 0.992 -3.000 0.077 1.000 Y NA
 10405095 10405096 DEFDS_0968 DEFDS_0969 speE speD TRUE 0.997 11.000 0.161 1.000 Y NA
 10405096 10405097 DEFDS_0969 DEFDS_0970 speD   FALSE 0.277 176.000 0.006 1.000 N NA
 10405097 10405098 DEFDS_0970 DEFDS_0971     FALSE 0.065 93.000 0.000 1.000 N NA
 10405099 10405100 DEFDS_0972 DEFDS_0973     TRUE 0.990 -3.000 0.057 NA N NA
 10405100 10405101 DEFDS_0973 DEFDS_0974     TRUE 0.984 -3.000 0.021 NA   NA
 10405101 10405102 DEFDS_0974 DEFDS_0975     TRUE 0.984 -3.000 0.021 NA   NA
 10405102 10405103 DEFDS_0975 DEFDS_0976     TRUE 0.675 119.000 0.069 NA   NA
 10405103 10405104 DEFDS_0976 DEFDS_0977     TRUE 0.760 147.000 0.300 1.000   NA
 10405104 10405105 DEFDS_0977 DEFDS_0978     TRUE 0.993 -10.000 0.200 1.000   NA
 10405105 10405106 DEFDS_0978 DEFDS_0979     TRUE 0.998 3.000 0.163 0.021   NA
 10405106 10405107 DEFDS_0979 DEFDS_0980     TRUE 0.991 2.000 0.023 1.000   NA
 10405107 10405108 DEFDS_0980 DEFDS_0981     TRUE 0.673 -7.000 0.000 NA   NA
 10405108 10405109 DEFDS_0981 DEFDS_0982     TRUE 0.995 -7.000 0.500 NA   NA
 10405109 10405110 DEFDS_0982 DEFDS_0983     TRUE 0.990 -10.000 0.083 1.000 N NA
 10405110 10405111 DEFDS_0983 DEFDS_0984     TRUE 0.995 -7.000 0.320 1.000   NA
 10405111 10405112 DEFDS_0984 DEFDS_0985     TRUE 0.993 -7.000 0.093 1.000   NA
 10405112 10405113 DEFDS_0985 DEFDS_0986     TRUE 0.466 -21.000 0.000 1.000 Y NA
 10405113 10405114 DEFDS_0986 DEFDS_0987     TRUE 0.995 17.000 0.041 0.036 N NA
 10405114 10405115 DEFDS_0987 DEFDS_0988     TRUE 0.995 9.000 0.045 NA   NA
 10405115 10405116 DEFDS_0988 DEFDS_0989     TRUE 0.989 -3.000 0.045 NA   NA
 10405116 10405117 DEFDS_0989 DEFDS_0990   truA TRUE 0.978 -7.000 0.013 1.000 N NA
 10405117 10405118 DEFDS_0990 DEFDS_0993 truA   FALSE 0.019 577.000 0.000 1.000 N NA
 10405118 10405119 DEFDS_0993 DEFDS_0994     TRUE 0.726 0.000 0.000 1.000 Y NA
 10405119 10405120 DEFDS_0994 DEFDS_0995     FALSE 0.245 44.000 0.000 1.000 N NA
 10405120 10405121 DEFDS_0995 DEFDS_0996     TRUE 0.910 -30.000 0.008 NA   NA
 10405121 10405122 DEFDS_0996 DEFDS_0997     TRUE 0.991 -3.000 0.061 NA   NA
 10405122 10405123 DEFDS_0997 DEFDS_0998     TRUE 0.980 3.000 0.008 NA   NA
 10405123 10405124 DEFDS_0998 DEFDS_0999     TRUE 0.990 1.000 0.026 1.000   NA
 10405124 10405125 DEFDS_0999 DEFDS_1000     TRUE 0.983 5.000 0.008 NA   NA
 10405125 10405126 DEFDS_1000 DEFDS_1001   ispD TRUE 0.993 -3.000 0.108 NA   NA
 10405126 10405127 DEFDS_1001 DEFDS_1002 ispD   TRUE 0.713 46.000 0.003 1.000   NA
 10405127 10405128 DEFDS_1002 DEFDS_1003   trpS TRUE 0.995 10.000 0.035 1.000   NA
 10405128 10405129 DEFDS_1003 DEFDS_1004 trpS   TRUE 0.993 10.000 0.022 NA   NA
 10405129 10405130 DEFDS_1004 DEFDS_1005     TRUE 0.995 -7.000 0.570 NA   NA
 10405130 10405131 DEFDS_1005 DEFDS_1006     TRUE 0.959 -24.000 0.028 NA N NA
 10405131 10405132 DEFDS_1006 DEFDS_1007     TRUE 0.989 -12.000 0.080 1.000 N NA
 10405132 10405133 DEFDS_1007 DEFDS_1008     TRUE 0.994 -7.000 0.207 1.000 N NA
 10405133 10405134 DEFDS_1008 DEFDS_1009     TRUE 0.993 0.000 0.052 1.000   NA
 10405134 10405135 DEFDS_1009 DEFDS_1010     TRUE 0.998 9.000 0.444 1.000   NA
 10405135 10405136 DEFDS_1010 DEFDS_1011     TRUE 0.978 -3.000 0.011 1.000 N NA
 10405136 10405137 DEFDS_1011 DEFDS_1012     TRUE 0.996 -3.000 0.533 1.000 Y NA
 10405137 10405138 DEFDS_1012 DEFDS_1013     TRUE 0.785 -10.000 0.000 0.037 N NA
 10405138 10405139 DEFDS_1013 DEFDS_1014     FALSE 0.023 287.000 0.000 1.000 N NA
 10405139 10405140 DEFDS_1014 DEFDS_1015     TRUE 0.979 -13.000 0.037 1.000 Y NA
 10405140 10405141 DEFDS_1015 DEFDS_1016     TRUE 0.987 -7.000 0.037 1.000 Y NA
 10405141 10405142 DEFDS_1016 DEFDS_1017     TRUE 0.803 3.000 0.000 1.000 N NA
 10405142 10405143 DEFDS_1017 DEFDS_1018     TRUE 0.838 -46.000 0.002 1.000 N NA
 10405144 10405145 DEFDS_1019 DEFDS_1020     FALSE 0.085 81.000 0.000 1.000   NA
 10405145 10405146 DEFDS_1020 DEFDS_1021   carA TRUE 0.982 8.000 0.005 1.000   NA
 10405146 10405147 DEFDS_1021 DEFDS_1022 carA   FALSE 0.161 55.000 0.000 1.000 N NA
 10405147 10405148 DEFDS_1022 DEFDS_1023     TRUE 0.452 -30.000 0.000 1.000 N NA
 10405148 10405149 DEFDS_1023 DEFDS_1024     TRUE 0.836 -7.000 0.000 0.005 Y NA
 10405150 10405151 DEFDS_1025 DEFDS_1026   pgi TRUE 0.831 8.000 0.000 1.000 N NA
 10405151 10405152 DEFDS_1026 DEFDS_1027 pgi   TRUE 0.908 -19.000 0.004 1.000 N NA
 10405152 10405153 DEFDS_1027 DEFDS_1028     TRUE 0.995 -7.000 0.137 0.043 N NA
 10405153 10405154 DEFDS_1028 DEFDS_1029   ftsH TRUE 0.761 65.000 0.019 1.000 N NA
 10405154 10405155 DEFDS_1029 DEFDS_1030 ftsH folP TRUE 0.995 -7.000 0.325 1.000 N NA
 10405155 10405156 DEFDS_1030 DEFDS_1031 folP   TRUE 0.993 -7.000 0.133 NA   NA
 10405156 10405157 DEFDS_1031 DEFDS_1032     TRUE 0.991 -16.000 0.502 NA   NA
 10405157 10405158 DEFDS_1032 DEFDS_1033   glmM TRUE 0.994 0.000 0.150 NA   NA
 10405158 10405159 DEFDS_1033 DEFDS_1034 glmM pdxJ TRUE 0.991 16.000 0.023 1.000 N NA
 10405159 10405160 DEFDS_1034 DEFDS_1035 pdxJ   TRUE 0.997 4.000 0.326 1.000 N NA
 10405160 10405161 DEFDS_1035 DEFDS_1036   kdsB TRUE 0.987 10.000 0.007 1.000 N NA
 10405161 10405162 DEFDS_1036 DEFDS_1037 kdsB pyrG TRUE 0.983 -7.000 0.019 1.000 N NA
 10405162 10405163 DEFDS_1037 DEFDS_1038 pyrG kdsA TRUE 0.995 0.000 0.138 1.000 N NA
 10405163 10405164 DEFDS_1038 DEFDS_1039 kdsA   TRUE 0.987 -9.000 0.046 1.000 Y NA
 10405164 10405165 DEFDS_1039 DEFDS_1040   kdsC TRUE 0.988 -3.000 0.025 1.000   NA
 10405165 10405166 DEFDS_1040 DEFDS_1041 kdsC   TRUE 0.973 -27.000 0.060 NA   NA
 10405166 10405167 DEFDS_1041 DEFDS_1042     TRUE 0.944 -16.000 0.009 NA   NA
 10405167 10405168 DEFDS_1042 DEFDS_1043     TRUE 0.998 10.000 0.543 NA   NA
 10405168 10405169 DEFDS_1043 DEFDS_1044   sigL TRUE 0.994 1.000 0.059 1.000   NA
 10405169 10405170 DEFDS_1044 DEFDS_1045 sigL   TRUE 0.998 9.000 0.632 NA N NA
 10405170 10405171 DEFDS_1045 DEFDS_1046     TRUE 0.998 14.000 0.561 NA N NA
 10405171 10405172 DEFDS_1046 DEFDS_1047     TRUE 0.988 0.000 0.028 1.000 Y NA
 10405172 10405173 DEFDS_1047 DEFDS_1048     TRUE 0.984 -3.000 0.022 NA   NA
 10405173 10405174 DEFDS_1048 DEFDS_1049     TRUE 0.996 5.000 0.171 NA   NA
 10405174 10405175 DEFDS_1049 DEFDS_1050     TRUE 0.990 -7.000 0.018 0.001 Y NA
 10405175 10405176 DEFDS_1050 DEFDS_1051     TRUE 0.998 -3.000 0.400 0.003   NA
 10405176 10405177 DEFDS_1051 DEFDS_1052     TRUE 0.994 -15.000 0.154 0.003   NA
 10405177 10405178 DEFDS_1052 DEFDS_1053   ptsH TRUE 0.995 2.000 0.036 0.003 Y NA
 10405178 10405179 DEFDS_1053 DEFDS_1054 ptsH ptsI TRUE 0.997 0.000 0.163 0.001 Y NA
 10405180 10405181 DEFDS_1055 DEFDS_1056     TRUE 0.761 2.000 0.000 NA   NA
 10405181 10405182 DEFDS_1056 DEFDS_t21   trn_Ser4 FALSE 0.031 145.000 0.000 NA   NA
 10405183 10405184 DEFDS_1057 DEFDS_1058     TRUE 0.986 -22.000 0.250 NA   NA
 10405184 10405185 DEFDS_1058 DEFDS_1059     TRUE 0.995 -10.000 0.750 NA   NA
 10405185 10405186 DEFDS_1059 DEFDS_1060     TRUE 0.994 -3.000 0.174 NA   NA
 10405188 10405189 DEFDS_1062 DEFDS_1063     TRUE 0.857 68.000 0.098 1.000 Y NA
 10405189 10405190 DEFDS_1063 DEFDS_1064     TRUE 0.998 12.000 0.143 0.020 Y NA
 10405190 10405191 DEFDS_1064 DEFDS_1065     TRUE 0.994 9.000 0.041 1.000 Y NA
 10405191 10405192 DEFDS_1065 DEFDS_1066     TRUE 0.995 -13.000 0.400 0.019 Y NA
 10405192 10405193 DEFDS_1066 DEFDS_1067     FALSE 0.052 107.000 0.000 1.000 N NA
 10405193 10405194 DEFDS_1067 DEFDS_1068     TRUE 0.995 4.000 0.055 1.000 N NA
 10405196 10405197 DEFDS_1071 DEFDS_1072 glnS   TRUE 0.979 9.000 0.003 1.000   NA
 10405198 10405199 DEFDS_1073 DEFDS_1074     FALSE 0.023 231.000 0.000 1.000 Y NA
 10405200 10405201 DEFDS_1075 DEFDS_1076   xerD TRUE 0.609 -13.000 0.000 1.000 N NA
 10405201 10405202 DEFDS_1076 DEFDS_1077 xerD   TRUE 0.992 4.000 0.028 1.000 N NA
 10405202 10405203 DEFDS_1077 DEFDS_1078     TRUE 0.909 -22.000 0.005 1.000 N NA
 10405203 10405204 DEFDS_1078 DEFDS_1079     TRUE 0.996 -3.000 0.457 NA   NA
 10405204 10405205 DEFDS_1079 DEFDS_1080     TRUE 0.982 2.000 0.010 NA   NA
 10405205 10405206 DEFDS_1080 DEFDS_1081     TRUE 0.993 4.000 0.028 1.000   NA
 10405206 10405207 DEFDS_1081 DEFDS_1082   era TRUE 0.975 -7.000 0.009 1.000   NA
 10405207 10405208 DEFDS_1082 DEFDS_1083 era   TRUE 0.987 1.000 0.016 1.000   NA
 10405208 10405209 DEFDS_1083 DEFDS_1084     TRUE 0.723 0.000 0.000 NA   NA
 10405209 10405210 DEFDS_1084 DEFDS_1085     FALSE 0.045 106.000 0.000 NA   NA
 10405210 10405211 DEFDS_1085 DEFDS_1086     TRUE 0.991 1.000 0.037 NA   NA
 10405211 10405212 DEFDS_1086 DEFDS_1087     TRUE 0.987 -7.000 0.038 NA   NA
 10405212 10405213 DEFDS_1087 DEFDS_1088     TRUE 0.992 -7.000 0.087 NA   NA
 10405213 10405214 DEFDS_1088 DEFDS_1089   ftsB TRUE 0.694 -3.000 0.000 NA   NA
 10405214 10405215 DEFDS_1089 DEFDS_1090 ftsB   TRUE 0.729 -3.000 0.000 1.000 N NA
 10405215 10405216 DEFDS_1090 DEFDS_1091   greA TRUE 0.973 1.000 0.005 1.000 N NA
 10405216 10405217 DEFDS_1091 DEFDS_1092 greA   TRUE 0.987 7.000 0.005 0.055 N NA
 10405217 10405218 DEFDS_1092 DEFDS_1093   pgsA TRUE 0.931 -13.000 0.003 1.000 N NA
 10405218 10405219 DEFDS_1093 DEFDS_1094 pgsA   TRUE 0.955 -3.000 0.003 NA   NA
 10405219 10405220 DEFDS_1094 DEFDS_1095     TRUE 0.977 -3.000 0.012 NA   NA
 10405220 10405221 DEFDS_1095 DEFDS_1096   ribD TRUE 0.967 -3.000 0.005 1.000   NA
 10405221 10405222 DEFDS_1096 DEFDS_1097 ribD ribC TRUE 0.990 -18.000 0.456 1.000 Y NA
 10405222 10405223 DEFDS_1097 DEFDS_1098 ribC   TRUE 0.990 0.000 0.037 1.000 Y NA
 10405223 10405224 DEFDS_1098 DEFDS_1099   ribE TRUE 0.997 14.000 0.051 0.002 Y NA
 10405224 10405225 DEFDS_1099 DEFDS_1100 ribE nusB TRUE 0.994 7.000 0.045 1.000 N NA
 10405225 10405226 DEFDS_1100 DEFDS_1101 nusB   TRUE 0.992 0.000 0.055 NA   NA
 10405226 10405227 DEFDS_1101 DEFDS_1102     TRUE 0.994 -3.000 0.222 NA   NA
 10405227 10405228 DEFDS_1102 DEFDS_1103     TRUE 0.945 -10.000 0.005 NA   NA
 10405228 10405229 DEFDS_1103 DEFDS_1104     TRUE 0.965 0.000 0.005 NA   NA
 10405229 10405230 DEFDS_1104 DEFDS_1105   pyrP TRUE 0.934 30.000 0.008 1.000   NA
 10405230 10405231 DEFDS_1105 DEFDS_1106 pyrP upp TRUE 0.994 0.000 0.101 1.000 Y NA
 10405231 10405232 DEFDS_1106 DEFDS_1107 upp   TRUE 0.965 3.000 0.002 NA   NA
 10405232 10405233 DEFDS_1107 DEFDS_1108   aroE TRUE 0.970 -7.000 0.009 NA   NA
 10405233 10405234 DEFDS_1108 DEFDS_1109 aroE   TRUE 0.981 1.000 0.009 1.000 N NA
 10405234 10405235 DEFDS_1109 DEFDS_1110     TRUE 0.998 11.000 0.136 0.024 Y NA
 10405235 10405236 DEFDS_1110 DEFDS_1111     TRUE 0.995 18.000 0.218 1.000 Y NA
 10405236 10405237 DEFDS_1111 DEFDS_1112     TRUE 0.979 -3.000 0.007 0.078 N NA
 10405239 10405240 DEFDS_1114 DEFDS_1115     TRUE 0.980 -7.000 0.018 NA   NA
 10405240 10405241 DEFDS_1115 DEFDS_1116     TRUE 0.986 1.000 0.018 NA   NA
 10405241 10405242 DEFDS_1116 DEFDS_1117   prfB TRUE 0.966 4.000 0.002 NA   NA
 10405242 10405243 DEFDS_1117 DEFDS_1118 prfB alr TRUE 0.924 -16.000 0.004 1.000 N NA
 10405243 10405244 DEFDS_1118 DEFDS_1119 alr   TRUE 0.973 -7.000 0.012 NA N NA
 10405244 10405245 DEFDS_1119 DEFDS_1120     TRUE 0.995 8.000 0.095 NA Y NA
 10405245 10405246 DEFDS_1120 DEFDS_1121     TRUE 0.994 14.000 0.051 NA Y NA
 10405246 10405247 DEFDS_1121 DEFDS_1122   moaD TRUE 0.836 13.000 0.000 NA   NA
 10405247 10405248 DEFDS_1122 DEFDS_1123 moaD   TRUE 0.694 -3.000 0.000 NA   NA
 10405248 10405249 DEFDS_1123 DEFDS_1124     TRUE 0.988 4.000 0.016 NA   NA
 10405249 10405250 DEFDS_1124 DEFDS_1125     TRUE 0.663 -3.000 0.000 NA N NA
 10405250 10405251 DEFDS_1125 DEFDS_1126     FALSE 0.027 219.000 0.000 1.000 N NA
 10405252 10405253 DEFDS_1127 DEFDS_1128     TRUE 0.750 3.000 0.000 NA N NA
 10405253 10405254 DEFDS_1128 DEFDS_1129     FALSE 0.021 248.000 0.000 NA   NA
 10405254 10405255 DEFDS_1129 DEFDS_1130     TRUE 0.950 -3.000 0.003 NA   NA
 10405255 10405256 DEFDS_1130 DEFDS_1131     TRUE 0.995 13.000 0.043 NA   NA
 10405257 10405258 DEFDS_1132 DEFDS_1133     TRUE 0.795 1.000 0.000 1.000   NA
 10405258 10405259 DEFDS_1133 DEFDS_1134     TRUE 0.980 -31.000 0.103 1.000   NA
 10405260 10405261 DEFDS_1135 DEFDS_1136 moaE   TRUE 0.729 -3.000 0.000 1.000 N NA
 10405261 10405262 DEFDS_1136 DEFDS_1137     TRUE 0.659 -10.000 0.000 1.000 N NA
 10405262 10405263 DEFDS_1137 DEFDS_1138     TRUE 0.995 -9.000 0.176 0.014 Y NA
 10405263 10405264 DEFDS_1138 DEFDS_1139     TRUE 0.697 -3.000 0.000 1.000 Y NA
 10405265 10405266 DEFDS_1140 DEFDS_1141     TRUE 0.992 14.000 0.017 1.000 N NA
 10405268 10405269 DEFDS_1143 DEFDS_1144 metF   TRUE 0.555 -19.000 0.000 1.000   NA
 10405270 10405271 DEFDS_1145 DEFDS_1146     TRUE 0.684 28.000 0.000 0.047   NA
 10405271 10405272 DEFDS_1146 DEFDS_1147     TRUE 0.995 0.000 0.048 0.004 Y NA
 10405272 10405273 DEFDS_1147 DEFDS_1148     TRUE 0.819 9.000 0.000 NA   NA
 10405273 10405274 DEFDS_1148 DEFDS_1149     TRUE 0.534 25.000 0.000 NA   NA
 10405274 10405275 DEFDS_1149 DEFDS_1150     TRUE 0.837 5.000 0.000 1.000   NA
 10405275 10405276 DEFDS_1150 DEFDS_1151     TRUE 0.752 -3.000 0.000 1.000   NA
 10405276 10405277 DEFDS_1151 DEFDS_1152     FALSE 0.021 250.000 0.000 NA   NA
 10405277 10405278 DEFDS_1152 DEFDS_1153     FALSE 0.022 246.000 0.000 NA   NA
 10405278 10405279 DEFDS_1153 DEFDS_1154     TRUE 0.694 0.000 0.000 NA N NA
 10405279 10405280 DEFDS_1154 DEFDS_1155   lysS TRUE 0.962 -3.000 0.004 1.000 N NA
 10405281 10405282 DEFDS_1156 DEFDS_1157 trmU   TRUE 0.811 15.000 0.000 NA   NA
 10405282 10405283 DEFDS_1157 DEFDS_1158   mreB FALSE 0.360 35.000 0.000 NA   NA
 10405283 10405284 DEFDS_1158 DEFDS_1159 mreB mreC TRUE 0.997 0.000 0.689 1.000 N NA
 10405284 10405285 DEFDS_1159 DEFDS_1160 mreC   TRUE 0.694 -3.000 0.000 NA   NA
 10405285 10405286 DEFDS_1160 DEFDS_1161     TRUE 0.482 -19.000 0.000 NA   NA
 10405286 10405287 DEFDS_1161 DEFDS_1162     TRUE 0.984 -16.000 0.075 1.000 N NA
 10405287 10405288 DEFDS_1162 DEFDS_1163     TRUE 0.977 -16.000 0.035 1.000 N NA
 10405288 10405289 DEFDS_1163 DEFDS_1164     TRUE 0.985 17.000 0.013 1.000 N NA
 10405289 10405290 DEFDS_1164 DEFDS_1165     TRUE 0.993 12.000 0.016 1.000   NA
 10405290 10405291 DEFDS_1165 DEFDS_1166     FALSE 0.262 40.000 0.000 NA   NA
 10405291 10405292 DEFDS_1166 DEFDS_1167     TRUE 0.696 56.000 0.008 NA   NA
 10405292 10405293 DEFDS_1167 DEFDS_1168     TRUE 0.826 14.000 0.000 NA   NA
 10405294 10405295 DEFDS_1169 DEFDS_1170 nrdA   FALSE 0.039 152.000 0.000 1.000   NA
 10405295 10405296 DEFDS_1170 DEFDS_1171     TRUE 0.998 10.000 0.158 0.050   NA
 10405297 10405298 DEFDS_1172 DEFDS_1173 ald accA FALSE 0.072 85.000 0.000 1.000 N NA
 10405298 10405299 DEFDS_1173 DEFDS_1174 accA mutL TRUE 0.965 -3.000 0.005 1.000 N NA
 10405299 10405300 DEFDS_1174 DEFDS_1175 mutL miaA TRUE 0.985 -3.000 0.021 1.000 N NA
 10405300 10405301 DEFDS_1175 DEFDS_1176 miaA hom FALSE 0.060 97.000 0.000 1.000 N NA
 10405301 10405302 DEFDS_1176 DEFDS_1177 hom   TRUE 0.991 0.000 0.041 1.000 N NA
 10405302 10405303 DEFDS_1177 DEFDS_1178   thrA TRUE 0.984 -3.000 0.018 1.000 N NA
 10405303 10405304 DEFDS_1178 DEFDS_1179 thrA   TRUE 0.985 -10.000 0.042 1.000 Y NA
 10405306 10405307 DEFDS_1181 DEFDS_1182     TRUE 0.557 24.000 0.000 NA   NA
 10405308 10405309 DEFDS_t22 DEFDS_1183 trn_Leu4   FALSE 0.245 41.000 0.000 NA   NA
 10405309 10405310 DEFDS_1183 DEFDS_t23   trn_Pro1 FALSE 0.031 146.000 0.000 NA   NA
 10405310 10405311 DEFDS_t23 DEFDS_1184 trn_Pro1   FALSE 0.245 41.000 0.000 NA   NA
 10405312 10405313 DEFDS_1185 DEFDS_1186 ileS   TRUE 0.891 53.000 0.049 1.000 N NA
 10405313 10405314 DEFDS_1186 DEFDS_1187   purH TRUE 0.925 -16.000 0.004 1.000 N NA
 10405314 10405315 DEFDS_1187 DEFDS_1188 purH purD TRUE 0.998 13.000 0.238 1.000 Y NA
 10405315 10405316 DEFDS_1188 DEFDS_1189 purD purE TRUE 0.989 -3.000 0.044 1.000 Y NA
 10405316 10405317 DEFDS_1189 DEFDS_1190 purE   TRUE 0.953 1.000 0.002 NA N NA
 10405317 10405318 DEFDS_1190 DEFDS_1191     FALSE 0.098 62.000 0.000 NA N NA
 10405318 10405319 DEFDS_1191 DEFDS_1192     TRUE 0.996 -7.000 0.535 1.000 N NA
 10405319 10405320 DEFDS_1192 DEFDS_t24   trn_Pro2 TRUE 0.842 12.000 0.000 NA   NA
 10405322 10405323 DEFDS_1194 DEFDS_1195     TRUE 0.994 3.000 0.050 1.000 N NA
 10405323 10405324 DEFDS_1195 DEFDS_1196     TRUE 0.931 43.000 0.050 1.000 N NA
 10405324 10405325 DEFDS_1196 DEFDS_1197     TRUE 0.973 33.000 0.035 0.012 Y NA
 10405325 10405326 DEFDS_1197 DEFDS_1198     TRUE 0.980 40.000 0.316 0.017 Y NA
 10405326 10405327 DEFDS_1198 DEFDS_1199     TRUE 0.987 22.000 0.065 NA   NA
 10405327 10405328 DEFDS_1199 DEFDS_1200     TRUE 0.996 -7.000 1.000 NA   NA
 10405328 10405329 DEFDS_1200 DEFDS_1201     TRUE 0.674 21.000 0.000 1.000 N NA
 10405329 10405330 DEFDS_1201 DEFDS_1202     TRUE 0.803 3.000 0.000 1.000 N NA
 10405330 10405331 DEFDS_1202 DEFDS_1203     TRUE 0.996 4.000 0.111 1.000 Y NA
 10405331 10405332 DEFDS_1203 DEFDS_1204     TRUE 0.946 54.000 0.500 1.000 Y NA
 10405333 10405334 DEFDS_1205 DEFDS_1206     TRUE 0.437 -25.000 0.000 NA   NA
 10405336 10405337 DEFDS_1208 DEFDS_1209     TRUE 0.821 9.000 0.000 1.000 Y NA
 10405337 10405338 DEFDS_1209 DEFDS_1210     TRUE 0.676 -7.000 0.000 1.000 Y NA
 10405339 10405340 DEFDS_1211 DEFDS_1212     FALSE 0.177 67.000 0.000 0.024 Y NA
 10405342 10405343 DEFDS_1214 DEFDS_1215   recG TRUE 0.899 79.000 0.750 1.000 N NA
 10405343 10405344 DEFDS_1215 DEFDS_1216 recG   TRUE 0.884 87.000 0.500 1.000   NA
 10405344 10405345 DEFDS_1216 DEFDS_1217   carB FALSE 0.294 116.000 0.003 1.000   NA
 10405345 10405346 DEFDS_1217 DEFDS_1218 carB pyrK TRUE 0.992 9.000 0.019 1.000 N NA
 10405346 10405347 DEFDS_1218 DEFDS_1219 pyrK pyrD TRUE 0.997 1.000 0.592 1.000 N NA
 10405347 10405348 DEFDS_1219 DEFDS_1220 pyrD   FALSE 0.031 143.000 0.000 NA   NA
 10405348 10405349 DEFDS_1220 DEFDS_1221     FALSE 0.032 137.000 0.000 NA   NA
 10405349 10405350 DEFDS_1221 DEFDS_1222   gph TRUE 0.482 -19.000 0.000 NA   NA
 10405350 10405351 DEFDS_1222 DEFDS_1223 gph   TRUE 0.993 -7.000 0.088 1.000   NA
 10405351 10405352 DEFDS_1223 DEFDS_1224   purB TRUE 0.972 14.000 0.002 1.000 Y NA
 10405353 10405354 DEFDS_1225 DEFDS_1226     TRUE 0.886 49.000 0.026 1.000   NA
 10405354 10405355 DEFDS_1226 DEFDS_1227     TRUE 0.999 10.000 0.269 0.002   NA
 10405355 10405356 DEFDS_1227 DEFDS_1228     TRUE 0.996 18.000 0.067 0.001 Y NA
 10405356 10405357 DEFDS_1228 DEFDS_1229     TRUE 0.619 167.000 0.069 1.000 N NA
 10405357 10405358 DEFDS_1229 DEFDS_1230     TRUE 0.803 3.000 0.000 1.000 N NA
 10405360 10405361 DEFDS_1232 DEFDS_1233     TRUE 0.542 -15.000 0.000 NA   NA
 10405361 10405362 DEFDS_1233 DEFDS_1234     TRUE 0.996 -3.000 0.722 NA N NA
 10405362 10405363 DEFDS_1234 DEFDS_1235     TRUE 0.992 -3.000 0.083 NA   NA
 10405363 10405364 DEFDS_1235 DEFDS_1236     TRUE 0.984 4.000 0.010 NA   NA
 10405365 10405366 DEFDS_1237 DEFDS_1238     TRUE 0.998 1.000 0.771 0.032 Y NA
 10405366 10405367 DEFDS_1238 DEFDS_1239     FALSE 0.036 314.000 0.000 0.032 Y NA
 10405368 10405369 DEFDS_1240 DEFDS_1241     TRUE 0.990 -19.000 0.500 1.000 Y NA
 10405370 10405371 DEFDS_1242 DEFDS_1243     FALSE 0.020 282.000 0.000 NA   NA
 10405371 10405372 DEFDS_1243 DEFDS_1244     TRUE 0.994 13.000 0.039 NA Y NA
 10405372 10405373 DEFDS_1244 DEFDS_1245     TRUE 0.994 6.000 0.039 1.000   NA
 10405373 10405374 DEFDS_1245 DEFDS_1246     TRUE 0.977 -43.000 0.167 NA   NA
 10405374 10405375 DEFDS_1246 DEFDS_1247     TRUE 0.620 -10.000 0.000 NA   NA
 10405375 10405376 DEFDS_1247 DEFDS_1248     TRUE 0.482 -19.000 0.000 NA   NA
 10405376 10405377 DEFDS_1248 DEFDS_1249     FALSE 0.013 346.000 0.000 NA Y NA
 10405377 10405378 DEFDS_1249 DEFDS_1250     TRUE 0.778 0.000 0.000 1.000   NA
 10405378 10405379 DEFDS_1250 DEFDS_1251     TRUE 0.620 -10.000 0.000 NA   NA
 10405379 10405380 DEFDS_1251 DEFDS_1252     TRUE 0.996 -3.000 0.667 NA   NA
 10405380 10405381 DEFDS_1252 DEFDS_1253     TRUE 0.993 -13.000 0.667 NA   NA
 10405381 10405382 DEFDS_1253 DEFDS_1254     TRUE 0.996 -3.000 1.000 NA   NA
 10405382 10405383 DEFDS_1254 DEFDS_1255     TRUE 0.944 -16.000 0.009 NA   NA
 10405383 10405384 DEFDS_1255 DEFDS_1256     TRUE 0.795 5.000 0.000 1.000 Y NA
 10405385 10405386 DEFDS_1258 DEFDS_1259     TRUE 0.951 -13.000 0.008 NA   NA
 10405386 10405387 DEFDS_1259 DEFDS_1260     TRUE 0.837 5.000 0.000 1.000   NA
 10405387 10405388 DEFDS_1260 DEFDS_1261   nuoF TRUE 0.843 -3.000 0.000 0.049   NA
 10405388 10405389 DEFDS_1261 DEFDS_1262 nuoF   TRUE 0.761 2.000 0.000 NA   NA
 10405389 10405390 DEFDS_1262 DEFDS_1263     TRUE 0.983 3.000 0.009 NA   NA
 10405390 10405391 DEFDS_1263 DEFDS_1264     TRUE 0.996 -3.000 0.500 NA   NA
 10405391 10405392 DEFDS_1264 DEFDS_1265     TRUE 0.996 2.000 0.068 0.032 Y NA
 10405392 10405393 DEFDS_1265 DEFDS_1266     TRUE 0.795 1.000 0.000 1.000   NA
 10405393 10405394 DEFDS_1266 DEFDS_1267     FALSE 0.279 43.000 0.000 1.000   NA
 10405397 10405398 DEFDS_1270 DEFDS_1271     TRUE 0.996 15.000 0.091 NA   NA
 10405399 10405400 DEFDS_1272 DEFDS_1273     TRUE 0.985 -22.000 0.133 1.000   NA
 10405400 10405401 DEFDS_1273 DEFDS_1274     TRUE 0.995 -3.000 0.242 NA   NA
 10405404 10405405 DEFDS_1277 DEFDS_1278     TRUE 0.723 0.000 0.000 NA   NA
 10405406 10405407 DEFDS_1279 DEFDS_1280     TRUE 0.984 2.000 0.013 NA   NA
 10405407 10405408 DEFDS_1280 DEFDS_1281     TRUE 0.972 -3.000 0.008 NA   NA
 10405408 10405409 DEFDS_1281 DEFDS_1282     TRUE 0.993 5.000 0.031 1.000   NA
 10405409 10405410 DEFDS_1282 DEFDS_1283   proC TRUE 0.983 -10.000 0.029 1.000 N NA
 10405410 10405411 DEFDS_1283 DEFDS_1284 proC   TRUE 0.994 1.000 0.057 1.000   NA
 10405411 10405412 DEFDS_1284 DEFDS_1285     TRUE 0.996 1.000 0.182 1.000   NA
 10405412 10405413 DEFDS_1285 DEFDS_1286     FALSE 0.028 215.000 0.000 1.000 N NA
 10405413 10405414 DEFDS_1286 DEFDS_1287     TRUE 0.996 0.000 0.444 1.000 Y NA
 10405414 10405415 DEFDS_1287 DEFDS_1288     TRUE 0.995 15.000 0.052 1.000 Y NA
 10405415 10405416 DEFDS_1288 DEFDS_1289     FALSE 0.038 120.000 0.000 NA   NA
 10405416 10405417 DEFDS_1289 DEFDS_1290     TRUE 0.979 -3.000 0.014 NA   NA
 10405417 10405418 DEFDS_1290 DEFDS_1291     TRUE 0.793 5.000 0.000 NA   NA
 10405418 10405419 DEFDS_1291 DEFDS_1292     TRUE 0.986 -10.000 0.046 1.000 N NA
 10405419 10405420 DEFDS_1292 DEFDS_1293     TRUE 0.995 -13.000 0.246 0.002 Y NA
 10405420 10405421 DEFDS_1293 DEFDS_1294     FALSE 0.020 369.000 0.000 1.000 N NA
 10405422 10405423 DEFDS_1295 DEFDS_1296     TRUE 0.709 -7.000 0.000 1.000 N NA
 10405423 10405424 DEFDS_1296 DEFDS_1297     TRUE 0.620 -10.000 0.000 NA   NA
 10405425 10405426 DEFDS_1298 DEFDS_1299 bioD bioA TRUE 0.994 -7.000 0.051 0.002 Y NA
 10405427 10405428 DEFDS_1300 DEFDS_1301 bioB bioF TRUE 0.988 -3.000 0.013 0.002 Y NA
 10405428 10405429 DEFDS_1301 DEFDS_1302 bioF   TRUE 0.694 -3.000 0.000 NA   NA
 10405429 10405430 DEFDS_1302 DEFDS_1303   bioC FALSE 0.420 -28.000 0.000 NA   NA
 10405430 10405431 DEFDS_1303 DEFDS_1304 bioC   TRUE 0.752 -3.000 0.000 1.000   NA
 10405431 10405432 DEFDS_1304 DEFDS_1305     TRUE 0.966 -31.000 0.036 1.000   NA
 10405433 10405434 DEFDS_1306 DEFDS_1307     TRUE 0.994 4.000 0.055 1.000 Y NA
 10405434 10405435 DEFDS_1307 DEFDS_1308     TRUE 0.989 -19.000 0.400 1.000 Y NA
 10405435 10405436 DEFDS_1308 DEFDS_1309     TRUE 0.995 11.000 0.029 1.000 Y NA
 10405436 10405437 DEFDS_1309 DEFDS_1310     TRUE 0.988 5.000 0.014 NA   NA
 10405438 10405439 DEFDS_1311 DEFDS_1312     TRUE 0.806 8.000 0.000 NA   NA
 10405439 10405440 DEFDS_1312 DEFDS_1313     TRUE 0.482 -19.000 0.000 NA   NA
 10405440 10405441 DEFDS_1313 DEFDS_1314     TRUE 0.694 -3.000 0.000 NA   NA
 10405441 10405442 DEFDS_1314 DEFDS_1315     TRUE 0.673 -7.000 0.000 NA   NA
 10405442 10405443 DEFDS_1315 DEFDS_1316     TRUE 0.988 -16.000 0.200 NA   NA
 10405443 10405444 DEFDS_1316 DEFDS_1317     TRUE 0.743 1.000 0.000 NA   NA
 10405444 10405445 DEFDS_1317 DEFDS_1318     TRUE 0.694 -3.000 0.000 NA   NA
 10405451 10405452 DEFDS_1325 DEFDS_1326     TRUE 0.673 -7.000 0.000 NA   NA
 10405452 10405453 DEFDS_1326 DEFDS_1327     FALSE 0.353 -1693.000 0.000 NA   NA
 10405454 10405455 DEFDS_1329 DEFDS_1330     TRUE 0.990 37.000 0.750 0.003 Y NA
 10405455 10405456 DEFDS_1330 DEFDS_1331     TRUE 0.999 13.000 0.750 0.003   NA
 10405456 10405457 DEFDS_1331 DEFDS_1332     TRUE 0.842 12.000 0.000 NA   NA
 10405457 10405458 DEFDS_1332 DEFDS_1333     TRUE 0.620 -10.000 0.000 NA   NA
 10405458 10405459 DEFDS_1333 DEFDS_1334     TRUE 0.794 -10.000 0.000 0.049   NA
 10405459 10405460 DEFDS_1334 DEFDS_1335     FALSE 0.187 51.000 0.000 1.000 N NA
 10405460 10405461 DEFDS_1335 DEFDS_1336     TRUE 0.822 3.000 0.000 1.000   NA
 10405461 10405462 DEFDS_1336 DEFDS_1337   glcK TRUE 0.555 -19.000 0.000 1.000   NA
 10405462 10405463 DEFDS_1337 DEFDS_1338 glcK   TRUE 0.987 -3.000 0.035 NA N NA
 10405463 10405464 DEFDS_1338 DEFDS_1339     TRUE 0.986 -13.000 0.070 NA   NA
 10405464 10405465 DEFDS_1339 DEFDS_1340   ftsY TRUE 0.968 2.000 0.003 1.000   NA
 10405465 10405466 DEFDS_1340 DEFDS_1341 ftsY smc TRUE 0.693 295.000 0.165 0.024 N NA
 10405466 10405467 DEFDS_1341 DEFDS_t25 smc trn_Arg4 FALSE 0.018 346.000 0.000 NA   NA
 10405467 10405468 DEFDS_t25 DEFDS_1344 trn_Arg4   FALSE 0.020 283.000 0.000 NA   NA
 10405468 10405469 DEFDS_1344 DEFDS_1345     FALSE 0.027 173.000 0.000 NA   NA
 10405469 10405470 DEFDS_1345 DEFDS_1346   glcF TRUE 0.990 -10.000 0.091 1.000 N NA
 10405470 10405471 DEFDS_1346 DEFDS_1347 glcF glcD TRUE 0.998 0.000 0.260 0.001 Y NA
 10405472 10405473 DEFDS_1348 DEFDS_1349     TRUE 0.999 10.000 0.537 0.002   NA
 10405474 10405475 DEFDS_1350 DEFDS_1351     FALSE 0.092 73.000 0.000 1.000 N NA
 10405475 10405476 DEFDS_1351 DEFDS_1352     TRUE 0.819 9.000 0.000 NA   NA
 10405476 10405477 DEFDS_1352 DEFDS_1353     TRUE 0.994 -3.000 0.160 NA   NA
 10405477 10405478 DEFDS_1353 DEFDS_1354     TRUE 0.930 45.000 0.067 NA   NA
 10405478 10405479 DEFDS_1354 DEFDS_1355     FALSE 0.284 39.000 0.000 NA   NA
 10405479 10405480 DEFDS_1355 DEFDS_1356   hemG TRUE 0.803 3.000 0.000 1.000 N NA
 10405480 10405481 DEFDS_1356 DEFDS_1357 hemG   TRUE 0.984 27.000 0.125 NA   NA
 10405481 10405482 DEFDS_1357 DEFDS_1358     TRUE 0.996 -3.000 0.500 NA   NA
 10405482 10405483 DEFDS_1358 DEFDS_1359   argS TRUE 0.957 0.000 0.003 NA   NA
 10405484 10405485 DEFDS_1360 DEFDS_1361     TRUE 0.694 -3.000 0.000 NA   NA
 10405485 10405486 DEFDS_1361 DEFDS_1362   ftsE FALSE 0.024 210.000 0.000 NA   NA
 10405486 10405487 DEFDS_1362 DEFDS_1363 ftsE ftsX TRUE 0.996 -3.000 0.431 1.000 Y NA
 10405487 10405488 DEFDS_1363 DEFDS_1364 ftsX   TRUE 0.989 -10.000 0.075 1.000 Y NA
 10405488 10405489 DEFDS_1364 DEFDS_1365     TRUE 0.998 5.000 0.408 0.015 N NA
 10405489 10405490 DEFDS_1365 DEFDS_1366     TRUE 0.925 59.000 0.210 1.000   NA
 10405490 10405491 DEFDS_1366 DEFDS_1367     TRUE 0.984 0.000 0.013 1.000   NA
 10405491 10405492 DEFDS_1367 DEFDS_1368     TRUE 0.951 -7.000 0.003 1.000 N NA
 10405492 10405493 DEFDS_1368 DEFDS_1369     TRUE 0.592 -16.000 0.000 1.000   NA
 10405494 10405495 DEFDS_1370 DEFDS_1371     TRUE 0.967 -7.000 0.007 NA   NA
 10405495 10405496 DEFDS_1371 DEFDS_1372     TRUE 0.591 -12.000 0.000 NA   NA
 10405496 10405497 DEFDS_1372 DEFDS_1373     TRUE 0.659 -12.000 0.000 1.000   NA
 10405497 10405498 DEFDS_1373 DEFDS_1374     TRUE 0.989 9.000 0.014 NA   NA
 10405498 10405499 DEFDS_1374 DEFDS_1375     FALSE 0.019 298.000 0.000 NA   NA
 10405499 10405500 DEFDS_1375 DEFDS_1376     TRUE 0.996 -3.000 0.600 1.000 N NA
 10405500 10405501 DEFDS_1376 DEFDS_1377     TRUE 0.999 10.000 0.400 0.026 Y NA
 10405501 10405502 DEFDS_1377 DEFDS_1378     TRUE 0.609 -13.000 0.000 1.000 N NA
 10405502 10405503 DEFDS_1378 DEFDS_1379     TRUE 0.966 1.000 0.005 NA N NA
 10405503 10405504 DEFDS_1379 DEFDS_1380     TRUE 0.965 16.000 0.002 NA   NA
 10405504 10405505 DEFDS_1380 DEFDS_1381   nadD TRUE 0.995 0.000 0.221 NA   NA
 10405505 10405506 DEFDS_1381 DEFDS_1382 nadD proA TRUE 0.998 11.000 0.170 1.000 N NA
 10405506 10405507 DEFDS_1382 DEFDS_1383 proA proB TRUE 0.998 3.000 0.281 0.002 Y NA
 10405507 10405508 DEFDS_1383 DEFDS_t26 proB trn_Gln TRUE 0.836 13.000 0.000 NA   NA
 10405508 10405509 DEFDS_t26 DEFDS_1384 trn_Gln   FALSE 0.033 133.000 0.000 NA   NA
 10405509 10405510 DEFDS_1384 DEFDS_1385     FALSE 0.037 123.000 0.000 NA   NA
 10405510 10405511 DEFDS_1385 DEFDS_1386     TRUE 0.697 -3.000 0.000 1.000 Y NA
 10405513 10405514 DEFDS_1388 DEFDS_1389     TRUE 0.965 -13.000 0.014 NA   NA
 10405514 10405515 DEFDS_1389 DEFDS_1390     TRUE 0.946 -12.000 0.005 NA   NA
 10405515 10405516 DEFDS_1390 DEFDS_1391   miaB TRUE 0.993 4.000 0.037 NA   NA
 10405516 10405517 DEFDS_1391 DEFDS_1392 miaB   TRUE 0.752 -3.000 0.000 1.000   NA
 10405517 10405518 DEFDS_1392 DEFDS_1393     TRUE 0.694 -3.000 0.000 NA   NA
 10405518 10405519 DEFDS_1393 DEFDS_1394     TRUE 0.992 -15.000 0.667 NA   NA
 10405521 10405522 DEFDS_1396 DEFDS_1397     FALSE 0.017 453.000 0.000 NA   NA
 10405522 10405523 DEFDS_1397 DEFDS_1398     TRUE 0.620 -10.000 0.000 NA   NA
 10405523 10405524 DEFDS_1398 DEFDS_1399     TRUE 0.761 2.000 0.000 NA   NA
 10405524 10405525 DEFDS_1399 DEFDS_1400     TRUE 0.898 64.000 0.182 NA   NA
 10405525 10405526 DEFDS_1400 DEFDS_1401     FALSE 0.031 139.000 0.000 NA   NA
 10405526 10405527 DEFDS_1401 DEFDS_1402     TRUE 0.987 -19.000 0.214 NA   NA
 10405527 10405528 DEFDS_1402 DEFDS_1403     TRUE 0.985 -22.000 0.200 1.000 Y NA
 10405528 10405529 DEFDS_1403 DEFDS_1404     FALSE 0.053 116.000 0.000 1.000   NA
 10405529 10405530 DEFDS_1404 DEFDS_1405     TRUE 0.977 0.000 0.007 1.000   NA
 10405530 10405531 DEFDS_1405 DEFDS_1406     TRUE 0.985 0.000 0.016 1.000   NA
 10405531 10405532 DEFDS_1406 DEFDS_1407   nfo TRUE 0.960 -3.000 0.004 1.000 N NA
 10405532 10405533 DEFDS_1407 DEFDS_1408 nfo   TRUE 0.982 3.000 0.008 1.000 N NA
 10405533 10405534 DEFDS_1408 DEFDS_1409     TRUE 0.843 9.000 0.000 1.000 N NA
 10405534 10405535 DEFDS_1409 DEFDS_1410     TRUE 0.482 -19.000 0.000 NA   NA
 10405535 10405536 DEFDS_1410 DEFDS_1411     TRUE 0.946 51.000 0.333 NA   NA
 10405536 10405537 DEFDS_1411 DEFDS_1412     TRUE 0.849 11.000 0.000 NA   NA
 10405537 10405538 DEFDS_1412 DEFDS_1413     TRUE 0.842 12.000 0.000 NA   NA
 10405540 10405541 DEFDS_1415 DEFDS_1416     FALSE 0.028 254.000 0.000 1.000   NA
 10405541 10405542 DEFDS_1416 DEFDS_1417     TRUE 0.810 2.000 0.000 1.000   NA
 10405543 10405544 DEFDS_1418 DEFDS_1419     FALSE 0.151 53.000 0.000 NA   NA
 10405545 10405546 DEFDS_1420 DEFDS_1421   dtd TRUE 0.995 9.000 0.048 1.000   NA
 10405546 10405547 DEFDS_1421 DEFDS_1422 dtd mviN TRUE 0.969 -3.000 0.005 1.000   NA
 10405549 10405550 DEFDS_1425 DEFDS_1426     TRUE 0.986 -7.000 0.027 1.000 N NA
 10405550 10405551 DEFDS_1426 DEFDS_1427     TRUE 0.995 -7.000 0.192 1.000   NA
 10405551 10405552 DEFDS_1427 DEFDS_1428   gmk TRUE 0.997 2.000 0.471 1.000   NA
 10405552 10405553 DEFDS_1428 DEFDS_1429 gmk   TRUE 0.994 -7.000 0.276 NA   NA
 10405554 10405555 DEFDS_1430 DEFDS_1431     TRUE 0.743 1.000 0.000 NA   NA
 10405555 10405556 DEFDS_1431 DEFDS_1432     TRUE 0.983 -16.000 0.069 NA   NA
 10405557 10405558 DEFDS_1433 DEFDS_1434 cspC   FALSE 0.149 70.000 0.000 0.052 Y NA
 10405561 10405562 DEFDS_1437 DEFDS_1438     FALSE 0.268 42.000 0.000 1.000 N NA
 10405564 10405565 DEFDS_1440 DEFDS_1441     TRUE 0.437 -25.000 0.000 NA   NA
 10405566 10405567 DEFDS_1442 DEFDS_1443     TRUE 0.723 0.000 0.000 NA   NA
 10405567 10405568 DEFDS_1443 DEFDS_1444     FALSE 0.025 298.000 0.000 1.000   NA
 10405568 10405569 DEFDS_1444 DEFDS_1445     TRUE 0.688 19.000 0.000 NA   NA
 10405569 10405570 DEFDS_1445 DEFDS_1446     TRUE 0.959 40.000 0.133 NA   NA
 10405570 10405571 DEFDS_1446 DEFDS_1447     TRUE 0.976 33.000 0.200 NA Y NA
 10405571 10405572 DEFDS_1447 DEFDS_1448     FALSE 0.015 346.000 0.000 NA N NA
 10405572 10405573 DEFDS_1448 DEFDS_1449     TRUE 0.998 12.000 0.349 NA N NA
 10405573 10405574 DEFDS_1449 DEFDS_1450     TRUE 0.989 -3.000 0.047 1.000 Y NA
 10405575 10405576 DEFDS_1451 DEFDS_1452     TRUE 0.729 -3.000 0.000 1.000 N NA
 10405576 10405577 DEFDS_1452 DEFDS_1453     TRUE 0.869 11.000 0.000 1.000 N NA
 10405578 10405579 DEFDS_1454 DEFDS_1455     TRUE 0.524 -16.000 0.000 1.000 Y NA
 10405579 10405580 DEFDS_1455 DEFDS_1456     TRUE 0.995 -10.000 0.667 1.000 N NA
 10405580 10405581 DEFDS_1456 DEFDS_1457     TRUE 0.733 -7.000 0.000 1.000   NA
 10405581 10405582 DEFDS_1457 DEFDS_1458     TRUE 0.673 -7.000 0.000 NA   NA
 10405582 10405583 DEFDS_1458 DEFDS_1459     TRUE 0.620 -10.000 0.000 NA   NA
 10405583 10405584 DEFDS_1459 DEFDS_1460     TRUE 0.987 8.000 0.012 NA   NA
 10405584 10405585 DEFDS_1460 DEFDS_1461   pckA FALSE 0.089 74.000 0.000 1.000 N NA
 10405586 10405587 DEFDS_1462 DEFDS_1463   alaS TRUE 0.967 -10.000 0.003 0.008   NA
 10405588 10405589 DEFDS_1464 DEFDS_1465     FALSE 0.242 47.000 0.000 1.000   NA
 10405589 10405590 DEFDS_1465 DEFDS_1466     TRUE 0.986 22.000 0.055 1.000 Y NA
 10405590 10405591 DEFDS_1466 DEFDS_1467     TRUE 0.993 24.000 0.588 1.000 Y NA
 10405591 10405592 DEFDS_1467 DEFDS_1468     TRUE 0.774 60.000 0.019 1.000 Y NA
 10405593 10405594 DEFDS_1469 DEFDS_1470     TRUE 0.995 14.000 0.049 NA   NA
 10405594 10405595 DEFDS_1470 DEFDS_1471     FALSE 0.092 68.000 0.000 NA   NA
 10405595 10405596 DEFDS_1471 DEFDS_1472     FALSE 0.022 561.000 0.000 1.000   NA
 10405597 10405598 DEFDS_1473 DEFDS_1474   glnA FALSE 0.279 43.000 0.000 1.000   NA
 10405598 10405599 DEFDS_1474 DEFDS_1475 glnA glnB TRUE 0.965 22.000 0.010 1.000 Y NA
 10405599 10405600 DEFDS_1475 DEFDS_1476 glnB   TRUE 0.780 118.000 0.300 NA   NA
 10405600 10405601 DEFDS_1476 DEFDS_1477     TRUE 0.993 -3.000 0.105 NA   NA
 10405601 10405602 DEFDS_1477 DEFDS_1478     TRUE 0.430 -27.000 0.000 NA   NA
 10405602 10405603 DEFDS_1478 DEFDS_1479     TRUE 0.694 -3.000 0.000 NA   NA
 10405603 10405604 DEFDS_1479 DEFDS_1480     FALSE 0.018 314.000 0.000 NA   NA
 10405604 10405605 DEFDS_1480 DEFDS_1481     TRUE 0.620 -10.000 0.000 NA   NA
 10405605 10405606 DEFDS_1481 DEFDS_1482     FALSE 0.403 32.000 0.000 NA   NA
 10405606 10405607 DEFDS_1482 DEFDS_1483   rnhA FALSE 0.420 -28.000 0.000 NA   NA
 10405607 10405608 DEFDS_1483 DEFDS_1484 rnhA   TRUE 0.973 -19.000 0.043 NA   NA
 10405608 10405609 DEFDS_1484 DEFDS_1485     TRUE 0.995 -7.000 0.342 NA   NA
 10405609 10405610 DEFDS_1485 DEFDS_t27   trn_Met3 TRUE 0.657 20.000 0.000 NA   NA
 10405610 10405611 DEFDS_t27 DEFDS_1486 trn_Met3   FALSE 0.172 50.000 0.000 NA   NA
 10405611 10405612 DEFDS_1486 DEFDS_1487     TRUE 0.978 -3.000 0.011 1.000 N NA
 10405612 10405613 DEFDS_1487 DEFDS_1488     TRUE 0.568 -13.000 0.000 NA   NA
 10405615 10405616 DEFDS_1490 DEFDS_1491     TRUE 0.997 6.000 0.083 0.044   NA
 10405616 10405617 DEFDS_1491 DEFDS_1492     TRUE 0.986 -12.000 0.054 1.000 N NA
 10405617 10405618 DEFDS_1492 DEFDS_1493     TRUE 0.997 1.000 0.732 1.000 Y NA
 10405618 10405619 DEFDS_1493 DEFDS_1494     TRUE 0.993 24.000 0.615 1.000 Y NA
 10405619 10405620 DEFDS_1494 DEFDS_1495     TRUE 0.997 -3.000 0.589 0.019 Y NA
 10405620 10405621 DEFDS_1495 DEFDS_1496     TRUE 0.998 9.000 0.621 1.000 N NA
 10405621 10405622 DEFDS_1496 DEFDS_1497     TRUE 0.995 -9.000 0.421 1.000 N NA
 10405622 10405623 DEFDS_1497 DEFDS_1498     FALSE 0.022 414.000 0.000 1.000   NA
 10405623 10405624 DEFDS_1498 DEFDS_1499     TRUE 0.987 -10.000 0.043 1.000   NA
 10405624 10405625 DEFDS_1499 DEFDS_1500     TRUE 0.996 10.000 0.067 NA   NA
 10405625 10405626 DEFDS_1500 DEFDS_1501   rplT FALSE 0.017 361.000 0.000 NA   NA
 10405626 10405627 DEFDS_1501 DEFDS_1502 rplT rpmI TRUE 0.998 19.000 0.928 0.016 Y NA
 10405627 10405628 DEFDS_1502 DEFDS_1503 rpmI infC TRUE 0.997 17.000 0.652 1.000 Y NA
 10405628 10405629 DEFDS_1503 DEFDS_1504 infC thrS TRUE 0.761 64.000 0.021 1.000 Y NA
 10405629 10405630 DEFDS_1504 DEFDS_1505 thrS   FALSE 0.043 112.000 0.000 NA   NA
 10405630 10405631 DEFDS_1505 DEFDS_1506     FALSE 0.225 43.000 0.000 NA   NA
 10405631 10405632 DEFDS_1506 DEFDS_1507     TRUE 0.997 -3.000 0.771 1.000   NA
 10405632 10405633 DEFDS_1507 DEFDS_1508     TRUE 0.997 4.000 0.562 NA   NA
 10405633 10405634 DEFDS_1508 DEFDS_1509     FALSE 0.028 163.000 0.000 NA   NA
 10405634 10405635 DEFDS_1509 DEFDS_1510     FALSE 0.092 68.000 0.000 NA   NA
 10405635 10405636 DEFDS_1510 DEFDS_1511     TRUE 0.951 -9.000 0.005 NA N NA
 10405636 10405637 DEFDS_1511 DEFDS_1512   plsC TRUE 0.948 -7.000 0.003 1.000 N NA
 10405637 10405638 DEFDS_1512 DEFDS_1513 plsC   TRUE 0.981 -10.000 0.024 1.000 N NA
 10405638 10405639 DEFDS_1513 DEFDS_1514   ahcY TRUE 0.963 1.000 0.003 1.000 N NA
 10405639 10405640 DEFDS_1514 DEFDS_1515 ahcY metK TRUE 0.992 26.000 0.114 0.001 Y NA
 10405640 10405641 DEFDS_1515 DEFDS_1516 metK   TRUE 0.963 2.000 0.003 NA   NA
 10405641 10405642 DEFDS_1516 DEFDS_1517     TRUE 0.972 4.000 0.004 NA   NA
 10405642 10405643 DEFDS_1517 DEFDS_1518     TRUE 0.987 -22.000 0.209 1.000   NA
 10405643 10405644 DEFDS_1518 DEFDS_1519     TRUE 0.916 28.000 0.004 1.000   NA
 10405644 10405645 DEFDS_1519 DEFDS_1520     TRUE 0.966 30.000 0.031 1.000 N NA
 10405645 10405646 DEFDS_1520 DEFDS_1521   rpsO TRUE 0.997 4.000 0.335 1.000 Y NA
 10405646 10405647 DEFDS_1521 DEFDS_1522 rpsO truB TRUE 0.565 85.000 0.013 1.000 Y NA
 10405647 10405648 DEFDS_1522 DEFDS_1523 truB   TRUE 0.990 -10.000 0.111 1.000 Y NA
 10405648 10405649 DEFDS_1523 DEFDS_1524     TRUE 0.995 1.000 0.113 NA   NA
 10405649 10405650 DEFDS_1524 DEFDS_1525   infB TRUE 0.990 -10.000 0.102 NA   NA
 10405650 10405651 DEFDS_1525 DEFDS_1526 infB   TRUE 0.996 16.000 0.223 NA N NA
 10405651 10405652 DEFDS_1526 DEFDS_1527   nusA TRUE 0.992 0.000 0.075 NA Y NA
 10405652 10405653 DEFDS_1527 DEFDS_1528 nusA   TRUE 0.998 9.000 0.759 NA   NA
 10405653 10405654 DEFDS_1528 DEFDS_1529     FALSE 0.020 268.000 0.000 NA   NA
 10405654 10405655 DEFDS_1529 DEFDS_1530     TRUE 0.795 1.000 0.000 1.000   NA
 10405656 10405657 DEFDS_1531 DEFDS_1532   rpsT FALSE 0.067 90.000 0.000 1.000 N NA
 10405658 10405659 DEFDS_1533 DEFDS_1534     TRUE 0.993 9.000 0.032 NA   NA
 10405660 10405661 DEFDS_1535 DEFDS_1536 hflK hflC TRUE 0.998 -3.000 0.947 0.007 Y NA
 10405661 10405662 DEFDS_1536 DEFDS_1537 hflC   FALSE 0.296 40.000 0.000 1.000 N NA
 10405662 10405663 DEFDS_1537 DEFDS_1538     TRUE 0.897 3.000 0.000 0.004 Y NA
 10405663 10405664 DEFDS_1538 DEFDS_1539     TRUE 0.966 -3.000 0.005 1.000 N NA
 10405664 10405665 DEFDS_1539 DEFDS_1540     FALSE 0.029 200.000 0.000 1.000 N NA
 10405665 10405666 DEFDS_1540 DEFDS_1541     TRUE 0.997 2.000 0.426 NA   NA
 10405666 10405667 DEFDS_1541 DEFDS_1542     TRUE 0.996 9.000 0.098 NA   NA
 10405667 10405668 DEFDS_1542 DEFDS_1543     TRUE 0.694 -3.000 0.000 NA   NA
 10405669 10405670 DEFDS_1544 DEFDS_1545     TRUE 0.781 22.000 0.000 0.011 Y NA
 10405672 10405673 DEFDS_1547 DEFDS_1548     TRUE 0.806 8.000 0.000 NA   NA
 10405674 10405675 DEFDS_1549 DEFDS_1550     TRUE 0.828 16.000 0.000 1.000   NA
 10405676 10405677 DEFDS_1551 DEFDS_1552 priA aspS FALSE 0.054 104.000 0.000 1.000 N NA
 10405677 10405678 DEFDS_1552 DEFDS_1553 aspS hisS TRUE 0.998 10.000 0.161 0.040 Y NA
 10405680 10405681 DEFDS_1555 DEFDS_1556     FALSE 0.151 53.000 0.000 NA   NA
 10405681 10405682 DEFDS_1556 DEFDS_1557     TRUE 0.994 14.000 0.010 0.001 N NA
 10405682 10405683 DEFDS_1557 DEFDS_1558   iscS TRUE 0.988 16.000 0.015 1.000 N NA
 10405683 10405684 DEFDS_1558 DEFDS_1559 iscS   TRUE 0.997 14.000 0.200 NA   NA
 10405684 10405685 DEFDS_1559 DEFDS_1560     TRUE 0.734 93.000 0.058 NA   NA
 10405685 10405686 DEFDS_1560 DEFDS_1561     TRUE 0.990 -3.000 0.038 1.000   NA
 10405686 10405687 DEFDS_1561 DEFDS_1562     TRUE 0.907 -16.000 0.003 1.000 N NA
 10405687 10405688 DEFDS_1562 DEFDS_1563     TRUE 0.952 -16.000 0.010 1.000 N NA
 10405688 10405689 DEFDS_1563 DEFDS_1564     TRUE 0.609 -13.000 0.000 1.000 N NA
 10405689 10405690 DEFDS_1564 DEFDS_1565     FALSE 0.363 35.000 0.000 1.000 Y NA
 10405690 10405691 DEFDS_1565 DEFDS_1566     TRUE 0.620 -10.000 0.000 NA   NA
 10405691 10405692 DEFDS_1566 DEFDS_1567     FALSE 0.310 38.000 0.000 NA   NA
 10405693 10405694 DEFDS_1568 DEFDS_1569     FALSE 0.028 258.000 0.000 1.000   NA
 10405694 10405695 DEFDS_1569 DEFDS_1570     TRUE 0.752 -3.000 0.000 1.000   NA
 10405695 10405696 DEFDS_1570 DEFDS_1571     TRUE 0.778 0.000 0.000 1.000   NA
 10405697 10405698 DEFDS_1572 DEFDS_1573     TRUE 0.998 13.000 0.400 NA   NA
 10405698 10405699 DEFDS_1573 DEFDS_1574     TRUE 0.540 102.000 0.018 NA   NA
 10405699 10405700 DEFDS_1574 DEFDS_1575     TRUE 0.998 6.000 0.916 NA   NA
 10405701 10405702 DEFDS_1576 DEFDS_1577   glpD FALSE 0.030 130.000 0.000 NA N NA
 10405702 10405703 DEFDS_1577 DEFDS_1578 glpD   TRUE 0.623 -10.000 0.000 1.000 Y NA
 10405704 10405705 DEFDS_1579 DEFDS_1580     TRUE 0.998 -3.000 0.909 0.019 Y NA
 10405705 10405706 DEFDS_1580 DEFDS_1581     TRUE 0.998 1.000 0.905 0.019 Y NA
 10405706 10405707 DEFDS_1581 DEFDS_1582     TRUE 0.949 68.000 0.783 0.019 Y NA
 10405708 10405709 DEFDS_1583 DEFDS_1584     TRUE 0.984 -13.000 0.043 1.000   NA
 10405709 10405710 DEFDS_1584 DEFDS_1585     TRUE 0.975 0.000 0.006 1.000   NA
 10405710 10405711 DEFDS_1585 DEFDS_1587     TRUE 0.858 13.000 0.000 1.000 N NA
 10405711 10405712 DEFDS_1587 DEFDS_1588     TRUE 0.995 0.000 0.115 1.000   NA
 10405712 10405713 DEFDS_1588 DEFDS_1589     TRUE 0.987 -43.000 0.600 1.000   NA
 10405713 10405714 DEFDS_1589 DEFDS_1590     TRUE 0.861 -3.000 0.000 0.002 Y NA
 10405714 10405715 DEFDS_1590 DEFDS_1591     FALSE 0.073 75.000 0.000 NA   NA
 10405716 10405717 DEFDS_1592 DEFDS_1593     TRUE 0.913 -13.000 0.002 NA   NA
 10405718 10405719 DEFDS_1594 DEFDS_1595     TRUE 0.985 -16.000 0.075 1.000 N NA
 10405720 10405721 DEFDS_1596 DEFDS_1597     FALSE 0.021 201.000 0.000 NA N NA
 10405721 10405722 DEFDS_1597 DEFDS_1598     TRUE 0.982 -3.000 0.018 NA   NA
 10405722 10405723 DEFDS_1598 DEFDS_1599   recN TRUE 0.958 -7.000 0.005 NA   NA
 10405723 10405724 DEFDS_1599 DEFDS_1600 recN   FALSE 0.018 351.000 0.000 NA   NA
 10405724 10405725 DEFDS_1600 DEFDS_1601     TRUE 0.620 -10.000 0.000 NA   NA
 10405727 10405728 DEFDS_1603 DEFDS_1604 purF purL TRUE 0.995 -3.000 0.223 1.000 Y NA
 10405728 10405729 DEFDS_1604 DEFDS_1605 purL purQ TRUE 0.998 2.000 0.346 0.001 Y NA
 10405729 10405730 DEFDS_1605 DEFDS_1606 purQ purS TRUE 0.998 1.000 0.656 0.001 Y NA
 10405730 10405731 DEFDS_1606 DEFDS_1607 purS   FALSE 0.020 373.000 0.000 1.000 N NA
 10405731 10405732 DEFDS_1607 DEFDS_1608     TRUE 0.997 -10.000 1.000 0.002 Y NA
 10405733 10405734 DEFDS_1609 DEFDS_1610     TRUE 0.492 -28.000 0.000 1.000   NA
 10405735 10405736 DEFDS_1611 DEFDS_1612     FALSE 0.051 97.000 0.000 NA   NA
 10405736 10405737 DEFDS_1612 DEFDS_1613     TRUE 0.997 2.000 0.148 0.022 N NA
 10405738 10405739 DEFDS_1614 DEFDS_1615   thiC FALSE 0.025 189.000 0.000 NA   NA
 10405739 10405740 DEFDS_1615 DEFDS_1616 thiC thiE TRUE 0.941 -39.000 0.007 0.004 Y NA
 10405740 10405741 DEFDS_1616 DEFDS_1617 thiE thiL TRUE 0.979 -7.000 0.006 0.004 Y NA
 10405741 10405742 DEFDS_1617 DEFDS_1618 thiL   FALSE 0.058 79.000 0.000 NA N NA
 10405742 10405743 DEFDS_1618 DEFDS_1619   cydA TRUE 0.995 10.000 0.043 NA N NA
 10405743 10405744 DEFDS_1619 DEFDS_1620 cydA cydB TRUE 0.999 13.000 0.939 0.047 Y NA
 10405745 10405746 DEFDS_1621 DEFDS_1622 pheT pheS TRUE 0.999 13.000 0.574 0.001 Y NA
 10405746 10405747 DEFDS_1622 DEFDS_1623 pheS   FALSE 0.022 230.000 0.000 NA   NA
 10405747 10405748 DEFDS_1623 DEFDS_1624     TRUE 0.821 96.000 0.256 NA   NA
 10405748 10405749 DEFDS_1624 DEFDS_1625     TRUE 0.952 51.000 0.105 0.047   NA
 10405749 10405750 DEFDS_1625 DEFDS_1626     FALSE 0.059 87.000 0.000 NA   NA
 10405750 10405751 DEFDS_1626 DEFDS_1627   argG FALSE 0.018 261.000 0.000 NA N NA
 10405751 10405752 DEFDS_1627 DEFDS_1628 argG argF TRUE 0.990 21.000 0.088 1.000 Y NA
 10405752 10405753 DEFDS_1628 DEFDS_1629 argF argD TRUE 0.988 3.000 0.017 1.000 Y NA
 10405753 10405754 DEFDS_1629 DEFDS_1630 argD   FALSE 0.016 582.000 0.000 1.000 Y NA
 10405754 10405755 DEFDS_1630 DEFDS_1631     TRUE 0.993 4.000 0.047 1.000 Y NA
 10405756 10405757 DEFDS_1632 DEFDS_1633   cspB FALSE 0.035 179.000 0.000 1.000   NA
 10405758 10405759 DEFDS_1634 DEFDS_1635     TRUE 0.482 -19.000 0.000 NA   NA
 10405759 10405760 DEFDS_1635 DEFDS_1637     FALSE 0.019 287.000 0.000 NA   NA
 10405760 10405761 DEFDS_1637 DEFDS_1638     TRUE 0.688 19.000 0.000 NA   NA
 10405761 10405762 DEFDS_1638 DEFDS_1639     TRUE 0.761 2.000 0.000 NA   NA
 10405762 10405763 DEFDS_1639 DEFDS_1640     FALSE 0.021 253.000 0.000 NA   NA
 10405763 10405764 DEFDS_1640 DEFDS_1641   nth TRUE 0.743 1.000 0.000 NA   NA
 10405764 10405765 DEFDS_1641 DEFDS_1642 nth ubiD TRUE 0.586 -10.000 0.000 NA N NA
 10405765 10405766 DEFDS_1642 DEFDS_1643 ubiD ubiE TRUE 0.979 18.000 0.015 NA Y NA
 10405766 10405767 DEFDS_1643 DEFDS_1644 ubiE   TRUE 0.800 39.000 0.003 1.000 N NA
 10405767 10405768 DEFDS_1644 DEFDS_1645     TRUE 0.991 -16.000 0.500 1.000 Y NA
 10405768 10405769 DEFDS_1645 DEFDS_1646     TRUE 0.842 10.000 0.000 NA   NA
 10405769 10405770 DEFDS_1646 DEFDS_1647     TRUE 0.694 -3.000 0.000 NA   NA
 10405770 10405771 DEFDS_1647 DEFDS_1648     TRUE 0.694 -3.000 0.000 NA   NA
 10405771 10405772 DEFDS_1648 DEFDS_1649     TRUE 0.673 -7.000 0.000 NA   NA
 10405772 10405773 DEFDS_1649 DEFDS_1650     FALSE 0.099 74.000 0.000 1.000   NA
 10405773 10405774 DEFDS_1650 DEFDS_1651     TRUE 0.673 -7.000 0.000 NA   NA
 10405774 10405775 DEFDS_1651 DEFDS_1652   ispF FALSE 0.162 51.000 0.000 NA   NA
 10405775 10405776 DEFDS_1652 DEFDS_1653 ispF   FALSE 0.029 156.000 0.000 NA   NA
 10405777 10405778 DEFDS_1654 DEFDS_1655     TRUE 0.568 -13.000 0.000 NA   NA
 10405779 10405780 DEFDS_1656 DEFDS_1657     FALSE 0.081 72.000 0.000 NA   NA
 10405780 10405781 DEFDS_1657 DEFDS_1658     TRUE 0.778 0.000 0.000 1.000   NA
 10405781 10405782 DEFDS_1658 DEFDS_1659   ruvA FALSE 0.020 368.000 0.000 1.000 N NA
 10405782 10405783 DEFDS_1659 DEFDS_1660 ruvA ruvC TRUE 0.995 -16.000 0.451 0.008 Y NA
 10405783 10405784 DEFDS_1660 DEFDS_1661 ruvC   TRUE 0.997 4.000 0.277 NA   NA
 10405784 10405785 DEFDS_1661 DEFDS_1662   leuA FALSE 0.045 106.000 0.000 NA   NA
 10405785 10405786 DEFDS_1662 DEFDS_1663 leuA   TRUE 0.844 70.000 0.073 1.000 N NA
 10405786 10405787 DEFDS_1663 DEFDS_1664     TRUE 0.995 -7.000 0.466 1.000 Y NA
 10405787 10405788 DEFDS_1664 DEFDS_1665   ilvC TRUE 0.681 105.000 0.046 1.000 N NA
 10405788 10405789 DEFDS_1665 DEFDS_1666 ilvC ilvH TRUE 0.986 23.000 0.023 0.002 Y NA
 10405789 10405790 DEFDS_1666 DEFDS_1667 ilvH ilvI TRUE 0.998 11.000 0.057 0.001 Y NA
 10405790 10405791 DEFDS_1667 DEFDS_1668 ilvI ilvD TRUE 0.998 10.000 0.089 0.002 Y NA
 10405791 10405792 DEFDS_1668 DEFDS_1669 ilvD   FALSE 0.021 264.000 0.000 1.000 Y NA
 10405792 10405793 DEFDS_1669 DEFDS_1670     TRUE 0.995 2.000 0.125 NA   NA
 10405793 10405794 DEFDS_1670 DEFDS_1671     FALSE 0.019 297.000 0.000 NA   NA
 10405794 10405795 DEFDS_1671 DEFDS_1672     TRUE 0.975 23.000 0.023 NA   NA
 10405796 10405797 DEFDS_1673 DEFDS_1674     TRUE 0.688 19.000 0.000 NA   NA
 10405798 10405799 DEFDS_1675 DEFDS_1676     TRUE 0.842 10.000 0.000 NA   NA
 10405800 10405801 DEFDS_1677 DEFDS_1678     TRUE 0.694 0.000 0.000 NA N NA
 10405801 10405802 DEFDS_1678 DEFDS_1679     TRUE 0.812 4.000 0.000 1.000 N NA
 10405802 10405803 DEFDS_1679 DEFDS_1680     TRUE 0.826 14.000 0.000 NA   NA
 10405803 10405804 DEFDS_1680 DEFDS_1681     TRUE 0.791 66.000 0.033 NA