MicrobesOnline Operon Predictions for Candidatus Hodgkinia cicadicola Dsem

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 7640683 7640684 HCDSEM_001 HCDSEM_002 cobQ cobP TRUE 0.995 0.000 0.031 1.000 Y NA
 7640684 7640685 HCDSEM_002 HCDSEM_003 cobP cobN FALSE 0.267 1.000 0.000 1.000   NA
 7640685 7640686 HCDSEM_003 HCDSEM_004 cobN cobO TRUE 0.945 -15.000 0.005 1.000   NA
 7640686 7640687 HCDSEM_004 HCDSEM_005 cobO cbiX FALSE 0.176 10.000 0.000 0.048   NA
 7640687 7640688 HCDSEM_005 HCDSEM_006 cbiX cobH TRUE 0.945 30.000 0.075 0.048   NA
 7640688 7640689 HCDSEM_006 HCDSEM_007 cobH   FALSE 0.177 89.000 0.000 NA   NA
 7640689 7640690 HCDSEM_007 HCDSEM_008     FALSE 0.246 2.000 0.000 NA   NA
 7640690 7640691 HCDSEM_008 HCDSEM_009   cobJ FALSE 0.207 3.000 0.000 NA   NA
 7640691 7640692 HCDSEM_009 HCDSEM_010 cobJ cobM FALSE 0.207 3.000 0.000 0.047   NA
 7640693 7640694 HCDSEM_011 HCDSEM_012     FALSE 0.180 690.000 0.000 NA   NA
 7640695 10793955 HCDSEM_013 HCDSEM_014 cobA   FALSE 0.207 3.000 0.000 NA   NA
 10793955 7640696 HCDSEM_014 HCDSEM_015   cobD FALSE 0.246 2.000 0.000 NA   NA
 7640699 7640700 HCDSEM_018 HCDSEM_019 dnaQ gidA FALSE 0.018 -13.000 0.000 1.000 N NA
 7640700 7640701 HCDSEM_019 HCDSEM_020 gidA trmE FALSE 0.207 3.000 0.000 1.000   NA
 7640702 7640703 HCDSEM_021 HCDSEM_022 rplM rpsI TRUE 0.967 -7.000 0.022 NA   NA
 7640703 7640704 HCDSEM_022 HCDSEM_023 rpsI   FALSE 0.246 2.000 0.000 NA   NA
 7640704 7640705 HCDSEM_023 HCDSEM_024   hisB FALSE 0.192 -13.000 0.000 NA   NA
 7640705 7640706 HCDSEM_024 HCDSEM_025 hisB hisH TRUE 0.994 -9.000 0.049 0.061 Y NA
 7640706 7640707 HCDSEM_025 HCDSEM_026 hisH hisA TRUE 0.872 4.000 0.000 0.061 Y NA
 7640707 7640708 HCDSEM_026 HCDSEM_027 hisA hisF TRUE 0.886 3.000 0.000 0.061 Y NA
 7640708 7640709 HCDSEM_027 HCDSEM_028 hisF hisI TRUE 0.991 20.000 0.105 0.061 Y NA
 7640709 7640710 HCDSEM_028 HCDSEM_029 hisI   FALSE 0.182 -31.000 0.000 NA   NA
 7640710 7640711 HCDSEM_029 HCDSEM_030   metF FALSE 0.174 23.000 0.000 NA   NA
 7640711 7640712 HCDSEM_030 HCDSEM_031 metF   FALSE 0.178 109.000 0.000 NA   NA
 7640714 7640715 HCDSEM_033 HCDSEM_034     FALSE 0.186 4.000 0.000 NA   NA
 7640717 7640718 HCDSEM_036 HCDSEM_037 sufB sufC TRUE 0.995 0.000 0.466 1.000 Y NA
 7640718 7640719 HCDSEM_037 HCDSEM_038 sufC   FALSE 0.178 120.000 0.000 NA   NA
 7640719 7640720 HCDSEM_038 HCDSEM_039   sufS FALSE 0.203 -12.000 0.000 NA   NA
 7640720 7640721 HCDSEM_039 HCDSEM_040 sufS   FALSE 0.180 -27.000 0.000 1.000   NA
 7640721 7640722 HCDSEM_040 HCDSEM_041   trnC FALSE 0.175 15.000 0.000 NA   NA
 7640722 7640723 HCDSEM_041 HCDSEM_042 trnC valS FALSE 0.207 3.000 0.000 NA   NA
 7640723 7640724 HCDSEM_042 HCDSEM_043 valS   FALSE 0.228 -10.000 0.000 1.000   NA
 7640724 7640725 HCDSEM_043 HCDSEM_044     FALSE 0.016 20.000 0.000 1.000 N NA
 7640726 7640727 HCDSEM_045 HCDSEM_046 cobT   TRUE 0.944 17.000 0.045 NA   NA
 7640727 7640728 HCDSEM_046 HCDSEM_047     FALSE 0.180 -25.000 0.000 1.000   NA
 7640729 7640730 HCDSEM_048 HCDSEM_049 folE   FALSE 0.017 -16.000 0.000 1.000 N NA
 7640730 7640731 HCDSEM_049 HCDSEM_050   gltX FALSE 0.030 -6.000 0.000 1.000 N NA
 7640733 7640734 HCDSEM_052 HCDSEM_053     FALSE 0.184 -45.000 0.000 NA   NA
 7640734 7640735 HCDSEM_053 HCDSEM_054     FALSE 0.174 28.000 0.000 NA   NA
 7640735 7640736 HCDSEM_054 HCDSEM_055     FALSE 0.174 17.000 0.000 NA   NA
 7640738 7640739 HCDSEM_057 HCDSEM_058     FALSE 0.181 -30.000 0.000 NA   NA
 7640739 7640740 HCDSEM_058 HCDSEM_059   gatA TRUE 0.291 -6.000 0.000 NA   NA
 7640740 7640741 HCDSEM_059 HCDSEM_060 gatA gatB TRUE 0.948 -24.000 0.492 0.014   NA
 7640741 7640742 HCDSEM_060 HCDSEM_061 gatB trnG FALSE 0.252 -9.000 0.000 NA   NA
 7640742 7640743 HCDSEM_061 HCDSEM_062 trnG trnW FALSE 0.267 1.000 0.000 NA   NA
 7640743 7640744 HCDSEM_062 HCDSEM_063 trnW rplK FALSE 0.176 79.000 0.000 NA   NA
 7640744 7640745 HCDSEM_063 HCDSEM_064 rplK rplJ TRUE 0.939 20.000 0.002 NA   NA
 7640745 7640746 HCDSEM_064 HCDSEM_065 rplJ rplL TRUE 0.946 18.000 0.884 NA   NA
 7640746 7640747 HCDSEM_065 HCDSEM_066 rplL rpoB TRUE 0.946 25.000 0.223 NA   NA
 7640747 7640748 HCDSEM_066 HCDSEM_067 rpoB rpoC TRUE 0.947 8.000 0.851 0.020   NA
 7640748 7640749 HCDSEM_067 HCDSEM_068 rpoC rpsL TRUE 0.900 -12.000 0.122 1.000 N NA
 7640749 7640750 HCDSEM_068 HCDSEM_069 rpsL rpsG TRUE 0.995 -7.000 0.620 NA Y NA
 7640750 7640751 HCDSEM_069 HCDSEM_070 rpsG fusA TRUE 0.995 0.000 0.114 NA Y NA
 7640751 7640752 HCDSEM_070 HCDSEM_071 fusA tufA TRUE 0.995 -7.000 0.102 0.013 Y NA
 7640752 7640753 HCDSEM_071 HCDSEM_072 tufA rpsJ TRUE 0.992 4.000 0.318 NA Y NA
 7640753 7640754 HCDSEM_072 HCDSEM_073 rpsJ rplC TRUE 0.991 30.000 0.307 NA Y NA
 7640754 7640755 HCDSEM_073 HCDSEM_074 rplC rplD TRUE 0.969 -6.000 0.020 NA   NA
 7640755 7640756 HCDSEM_074 HCDSEM_075 rplD rplB FALSE 0.180 -24.000 0.000 NA   NA
 7640756 7640757 HCDSEM_075 HCDSEM_076 rplB rpsS TRUE 0.994 2.000 0.820 1.000 Y NA
 7640757 7640758 HCDSEM_076 HCDSEM_077 rpsS rplV TRUE 0.994 -10.000 0.119 1.000 Y NA
 7640758 7640759 HCDSEM_077 HCDSEM_078 rplV rpsC TRUE 0.995 0.000 0.109 1.000 Y NA
 7640759 7640760 HCDSEM_078 HCDSEM_079 rpsC rplP TRUE 0.947 89.000 0.828 NA   NA
 7640760 7640761 HCDSEM_079 HCDSEM_080 rplP rpsQ TRUE 0.969 -6.000 0.009 NA   NA
 7640761 7640762 HCDSEM_080 HCDSEM_081 rpsQ rplN TRUE 0.992 69.000 0.791 NA Y NA
 7640762 7640763 HCDSEM_081 HCDSEM_082 rplN   FALSE 0.192 -13.000 0.000 NA   NA
 7640763 7640764 HCDSEM_082 HCDSEM_083   rplE FALSE 0.192 -13.000 0.000 NA   NA
 7640764 7640765 HCDSEM_083 HCDSEM_084 rplE rpsN TRUE 0.995 -7.000 0.309 NA Y NA
 7640765 7640766 HCDSEM_084 HCDSEM_085 rpsN rpsH TRUE 0.996 -6.000 0.295 NA Y NA
 7640766 7640767 HCDSEM_085 HCDSEM_086 rpsH rplF TRUE 0.992 -15.000 0.808 NA Y NA
 7640767 7640768 HCDSEM_086 HCDSEM_087 rplF rplR TRUE 0.949 -16.000 0.815 NA   NA
 7640768 7640769 HCDSEM_087 HCDSEM_088 rplR rpsE TRUE 0.971 0.000 0.814 NA   NA
 7640769 7640770 HCDSEM_088 HCDSEM_089 rpsE rplO TRUE 0.995 -9.000 0.148 1.000 Y NA
 7640770 7640771 HCDSEM_089 HCDSEM_090 rplO rpsM TRUE 0.863 19.000 0.000 1.000 Y NA
 7640771 7640772 HCDSEM_090 HCDSEM_091 rpsM rpsK TRUE 0.992 -22.000 0.810 NA Y NA
 7640772 7640773 HCDSEM_091 HCDSEM_092 rpsK rpoA TRUE 0.956 3.000 0.308 NA   NA
 7640773 7640774 HCDSEM_092 HCDSEM_093 rpoA rplQ TRUE 0.969 -7.000 0.873 NA   NA
 7640775 7640776 HCDSEM_094 HCDSEM_095 rplY prs FALSE 0.181 -28.000 0.000 NA   NA
 7640776 7640777 HCDSEM_095 HCDSEM_096 prs trnM FALSE 0.175 15.000 0.000 NA   NA
 7640778 10793956 HCDSEM_097 HCDSEM_189 mnmA   FALSE 0.175 12.000 0.000 NA   NA
 10793956 7640779 HCDSEM_189 HCDSEM_098   prfA FALSE 0.176 9.000 0.000 NA   NA
 7640779 7640780 HCDSEM_098 HCDSEM_099 prfA trnG FALSE 0.179 6.000 0.000 NA   NA
 7640780 7640781 HCDSEM_099 HCDSEM_100 trnG   FALSE 0.176 86.000 0.000 NA   NA
 7640781 7640782 HCDSEM_100 HCDSEM_101   hisD FALSE 0.252 -9.000 0.000 NA   NA
 7640782 7640783 HCDSEM_101 HCDSEM_102 hisD infA FALSE 0.017 -15.000 0.000 1.000 N NA
 7640783 7640784 HCDSEM_102 HCDSEM_103 infA trnF FALSE 0.177 8.000 0.000 NA   NA
 7640785 7640786 HCDSEM_104 HCDSEM_105 dnaE proS FALSE 0.228 -10.000 0.000 0.083   NA
 7640787 7640788 HCDSEM_106 HCDSEM_107 rpsP rplS FALSE 0.246 2.000 0.000 NA   NA
 7640788 7640789 HCDSEM_107 HCDSEM_108 rplS trnG FALSE 0.174 35.000 0.000 NA   NA
 7640789 7640790 HCDSEM_108 HCDSEM_109 trnG def FALSE 0.181 -22.000 0.000 NA   NA
 7640792 7640793 HCDSEM_111 HCDSEM_112   trpS FALSE 0.174 21.000 0.000 NA   NA
 7640796 7640797 HCDSEM_115 HCDSEM_116     FALSE 0.203 -12.000 0.000 NA   NA
 7640797 7640798 HCDSEM_116 HCDSEM_117   cysI FALSE 0.207 3.000 0.000 NA   NA
 7640800 7640801 HCDSEM_119 HCDSEM_120 dnaJ dnaK TRUE 0.872 4.000 0.000 0.012 Y NA
 7640804 7640805 HCDSEM_123 HCDSEM_124     TRUE 0.864 79.000 0.000 0.024 Y NA
 7640805 7640806 HCDSEM_124 HCDSEM_125     TRUE 0.925 -6.000 0.000 NA Y NA
 7640806 7640807 HCDSEM_125 HCDSEM_126     FALSE 0.177 107.000 0.000 NA   NA
 7640809 7640810 HCDSEM_128 HCDSEM_129 rrsA trnA FALSE 0.179 220.000 0.000 NA   NA
 7640810 7640811 HCDSEM_129 HCDSEM_130 trnA rrlA FALSE 0.175 15.000 0.000 NA   NA
 7640811 7640812 HCDSEM_130 HCDSEM_131 rrlA rrfA FALSE 0.174 17.000 0.000 NA   NA
 7640812 7640813 HCDSEM_131 HCDSEM_132 rrfA trnM FALSE 0.211 -11.000 0.000 NA   NA
 7640815 7640816 HCDSEM_134 HCDSEM_135   glyA FALSE 0.192 -13.000 0.000 NA   NA
 7640816 7640817 HCDSEM_135 HCDSEM_136 glyA ribD FALSE 0.267 1.000 0.000 1.000   NA
 7640817 7640818 HCDSEM_136 HCDSEM_137 ribD ribC TRUE 0.969 -7.000 0.456 1.000   NA
 7640818 7640819 HCDSEM_137 HCDSEM_138 ribC hisS FALSE 0.174 29.000 0.000 1.000   NA
 7640819 7640820 HCDSEM_138 HCDSEM_139 hisS   FALSE 0.181 5.000 0.000 NA   NA
 7640820 7640821 HCDSEM_139 HCDSEM_140   hisG FALSE 0.228 -10.000 0.000 NA   NA
 7640821 7640822 HCDSEM_140 HCDSEM_141 hisG ribE TRUE 0.951 -12.000 0.005 1.000   NA
 7640824 7640825 HCDSEM_143 HCDSEM_144 trnP metC FALSE 0.174 39.000 0.000 NA   NA
 7640825 7640826 HCDSEM_144 HCDSEM_145 metC cysE TRUE 0.907 2.000 0.000 0.074 Y NA
 7640826 7640827 HCDSEM_145 HCDSEM_146 cysE   TRUE 0.291 -6.000 0.000 NA   NA
 7640827 7640828 HCDSEM_146 HCDSEM_147   glyQ FALSE 0.183 -40.000 0.000 NA   NA
 7640828 7640829 HCDSEM_147 HCDSEM_148 glyQ   FALSE 0.228 -10.000 0.000 NA   NA
 7640831 7640832 HCDSEM_150 HCDSEM_151 groS groL TRUE 0.918 -7.000 0.000 0.096 Y NA
 7640834 7640835 HCDSEM_153 HCDSEM_154   rpsB FALSE 0.179 589.000 0.000 NA   NA
 7640835 7640836 HCDSEM_154 HCDSEM_155 rpsB tsf TRUE 0.969 -7.000 0.748 NA   NA
 7640836 7640837 HCDSEM_155 HCDSEM_156 tsf frr TRUE 0.969 0.000 0.021 NA   NA
 7640838 7640839 HCDSEM_157 HCDSEM_158 metG hisC FALSE 0.017 -21.000 0.000 1.000 N NA
 7640840 7640841 HCDSEM_159 HCDSEM_160 rpmB rpsF FALSE 0.228 -10.000 0.000 NA   NA
 7640841 7640842 HCDSEM_160 HCDSEM_161 rpsF rpsR TRUE 0.949 -19.000 0.319 NA   NA
 7640842 7640843 HCDSEM_161 HCDSEM_162 rpsR cysH FALSE 0.022 -10.000 0.000 NA N NA
 7640844 7640845 HCDSEM_163 HCDSEM_164 trnQ trnI FALSE 0.175 53.000 0.000 NA   NA
 7640848 7640849 HCDSEM_167 HCDSEM_168 infC rpmI FALSE 0.228 -10.000 0.000 NA   NA
 7640849 7640850 HCDSEM_168 HCDSEM_169 rpmI rplT FALSE 0.207 3.000 0.000 NA   NA
 7640850 7640851 HCDSEM_169 HCDSEM_170 rplT pheS TRUE 0.992 78.000 0.202 1.000 Y NA
 7640851 7640852 HCDSEM_170 HCDSEM_171 pheS   FALSE 0.180 -25.000 0.000 NA   NA
 7640852 7640853 HCDSEM_171 HCDSEM_172     FALSE 0.203 -12.000 0.000 NA   NA
 7640853 7640854 HCDSEM_172 HCDSEM_173     TRUE 0.886 3.000 0.000 0.011 Y NA
 7640854 7640855 HCDSEM_173 HCDSEM_174     TRUE 0.995 0.000 0.630 0.016 Y NA
 7640856 7640857 HCDSEM_175 HCDSEM_176 clpP cobS FALSE 0.024 2.000 0.000 1.000 N NA
 7640858 7640859 HCDSEM_177 HCDSEM_178 alaS rpsD TRUE 0.274 -7.000 0.000 1.000   NA
 7640860 7640861 HCDSEM_179 HCDSEM_180     TRUE 0.286 0.000 0.000 NA   NA
 7640861 7640862 HCDSEM_180 HCDSEM_181     TRUE 0.890 -15.000 0.268 1.000 N NA
 7640862 7640863 HCDSEM_181 HCDSEM_182     TRUE 0.991 44.000 0.741 0.011 Y NA
 7640863 7640864 HCDSEM_182 HCDSEM_183     FALSE 0.016 51.000 0.000 0.059 N NA
 7640864 7640865 HCDSEM_183 HCDSEM_184   greA FALSE 0.030 -6.000 0.000 1.000 N NA
 7640866 7640867 HCDSEM_185 HCDSEM_186   rpmJ FALSE 0.207 3.000 0.000 NA   NA
 7640868 7640869 HCDSEM_187 HCDSEM_188 trnH   FALSE 0.178 138.000 0.000 NA   NA