MicrobesOnline Operon Predictions for Vibrio cholerae 2740-80

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 3059988 3059989 VC274080_0149 VC274080_0150     FALSE 0.025 218.000 0.000 NA   NA
 3059989 3059990 VC274080_0150 VC274080_0151     FALSE 0.496 24.000 0.000 NA   NA
 3059991 3059992 VC274080_0152 VC274080_0153     FALSE 0.145 127.000 0.120 1.000 N NA
 3059992 3059993 VC274080_0153 VC274080_0154     FALSE 0.020 189.000 0.047 1.000   NA
 3059995 3059996 VC274080_0156 VC274080_0157     TRUE 0.993 -3.000 0.547 0.002 N NA
 3059996 3059997 VC274080_0157 VC274080_0158     TRUE 0.994 -3.000 0.650 0.002 N NA
 3059998 3059999 VC274080_0159 VC274080_0160     FALSE 0.006 338.000 0.000 NA   NA
 3059999 3060000 VC274080_0160 VC274080_0161   glpK FALSE 0.012 112.000 0.032 1.000 N NA
 3060001 3060002 VC274080_0162 VC274080_0163     FALSE 0.011 276.000 0.000 NA   NA
 3060002 3060003 VC274080_0163 VC274080_0164     TRUE 0.769 0.000 0.066 NA   NA
 3060004 3060005 VC274080_0165 VC274080_0166     TRUE 0.949 -7.000 0.308 NA   NA
 3060005 3060006 VC274080_0166 VC274080_0167     FALSE 0.319 42.000 0.089 NA   NA
 3060006 3060007 VC274080_0167 VC274080_0168     TRUE 0.586 17.000 0.082 NA   NA
 3060007 3060008 VC274080_0168 VC274080_0169     FALSE 0.095 102.000 0.036 NA   NA
 3060008 3060009 VC274080_0169 VC274080_0170     FALSE 0.028 212.000 0.000 NA   NA
 3060009 3060010 VC274080_0170 VC274080_0172     TRUE 0.831 18.000 0.278 NA N NA
 3060011 3060012 VC274080_0171 VC274080_0173     FALSE 0.016 244.000 0.000 NA   NA
 3060012 3060013 VC274080_0173 VC274080_0174     FALSE 0.247 59.000 0.000 NA   NA
 3060013 3060014 VC274080_0174 VC274080_0175     TRUE 0.734 41.000 0.333 NA   NA
 3060017 3060018 VC274080_0177 VC274080_0178     TRUE 0.964 3.000 0.333 NA   NA
 3060018 3060019 VC274080_0178 VC274080_0179     TRUE 0.975 -7.000 0.667 NA   NA
 3060019 3060020 VC274080_0179 VC274080_0180   cobQ FALSE 0.002 603.000 0.000 1.000   NA
 3060020 3060021 VC274080_0180 VC274080_0181 cobQ modA FALSE 0.118 12.000 0.010 1.000 N NA
 3060021 3060022 VC274080_0181 VC274080_0182 modA modB TRUE 0.990 4.000 0.035 0.001 Y NA
 3060022 3060023 VC274080_0182 VC274080_0183 modB modC TRUE 0.995 14.000 0.537 0.001 Y NA
 3060024 3060025 VC274080_0184 VC274080_0185     FALSE 0.395 87.000 0.167 NA   NA
 3060025 3060026 VC274080_0185 VC274080_0186     TRUE 0.659 57.000 0.333 NA   NA
 3060027 3060028 VC274080_0187 VC274080_0188     TRUE 0.767 -3.000 0.077 1.000   NA
 3060031 3060032 VC274080_0191 VC274080_0192     TRUE 0.970 -7.000 0.562 NA   NA
 3060032 3060033 VC274080_0192 VC274080_0193     FALSE 0.063 173.000 0.089 NA   NA
 3060034 3060035 VC274080_0194 VC274080_0195     FALSE 0.087 122.000 0.007 NA   NA
 3060036 3060037 VC274080_0196 VC274080_0197 mgsA torT FALSE 0.561 55.000 0.049 NA Y NA
 3060039 3060040 VC274080_0199 VC274080_0200 pyk   TRUE 0.712 122.000 0.267 1.000 Y NA
 3060041 3060042 VC274080_A0746 VC274080_0201     FALSE 0.410 31.000 0.000 NA   NA
 3060042 3060043 VC274080_0201 VC274080_0202     TRUE 0.712 -3.000 0.105 1.000 N NA
 3060043 3060044 VC274080_0202 VC274080_0204     TRUE 0.951 -25.000 0.158 1.000 Y NA
 3060045 3060046 VC274080_0203 VC274080_0205     FALSE 0.200 79.000 0.000 1.000   NA
 3060046 3060047 VC274080_0205 VC274080_0206     FALSE 0.004 386.000 0.000 NA   NA
 3060049 3060050 VC274080_0208 VC274080_0209 glgC   FALSE 0.003 303.000 0.000 1.000 N NA
 3060051 3060052 VC274080_0210 VC274080_0211     FALSE 0.212 77.000 0.000 NA   NA
 3060052 3060053 VC274080_0211 VC274080_0212   secD FALSE 0.384 72.000 0.155 NA   NA
 3060053 3060054 VC274080_0212 VC274080_0213 secD secF TRUE 0.997 4.000 0.366 0.002 Y NA
 3060054 3060055 VC274080_0213 VC274080_0214 secF   FALSE 0.001 671.000 0.000 1.000 N NA
 3060055 3060056 VC274080_0214 VC274080_0215     TRUE 0.985 13.000 0.812 1.000 Y NA
 3060056 3060057 VC274080_0215 VC274080_0216     TRUE 0.881 30.000 0.652 NA   NA
 3060057 3060058 VC274080_0216 VC274080_0217     FALSE 0.491 58.000 0.187 NA   NA
 3060059 3060060 VC274080_0218 VC274080_0219     TRUE 0.961 12.000 0.238 0.060 N NA
 3060060 3060061 VC274080_0219 VC274080_0220     TRUE 0.935 110.000 0.667 0.060 Y NA
 3060061 3060062 VC274080_0220 VC274080_0221     TRUE 0.711 113.000 0.259 0.060 N NA
 3060062 3060063 VC274080_0221 VC274080_0222     TRUE 0.795 68.000 0.389 0.080 N NA
 3060063 3060064 VC274080_0222 VC274080_0223     TRUE 0.998 3.000 0.900 0.031 Y NA
 3060066 3060067 VC274080_0225 VC274080_0226     TRUE 0.966 12.000 0.667 NA   NA
 3060067 3060068 VC274080_0226 VC274080_0227   napB TRUE 0.940 18.000 0.245 NA Y NA
 3060068 3060069 VC274080_0227 VC274080_0228 napB napA TRUE 0.869 67.000 0.643 NA Y NA
 3060069 3060070 VC274080_0228 VC274080_0229 napA napD TRUE 0.951 -3.000 0.348 NA N NA
 3060070 3060071 VC274080_0229 VC274080_0230 napD napF TRUE 0.732 27.000 0.209 NA   NA
 3060072 3060073 VC274080_0231 VC274080_0232     TRUE 0.978 -10.000 0.051 0.031 Y NA
 3060074 3060075 VC274080_0233 VC274080_0234     FALSE 0.013 261.000 0.000 NA   NA
 3060078 3060079 VC274080_0237 VC274080_0238   sdaA TRUE 0.931 11.000 0.000 1.000 Y NA
 3060080 3060081 VC274080_0239 VC274080_0240     FALSE 0.001 406.000 0.000 1.000 N NA
 3060084 3060085 VC274080_0243 VC274080_0244     TRUE 0.928 10.000 0.222 NA   NA
 3060085 3060086 VC274080_0244 VC274080_0245     FALSE 0.020 234.000 0.130 1.000 N NA
 3060089 3060090 VC274080_0248 VC274080_0249     FALSE 0.037 76.000 0.070 1.000 N NA
 3060093 3060094 VC274080_0252 VC274080_0253     TRUE 0.968 -3.000 0.421 NA   NA
 3060094 3060095 VC274080_0253 VC274080_0254     TRUE 0.603 89.000 0.341 NA   NA
 3060095 3060096 VC274080_0254 VC274080_0255     TRUE 0.974 0.000 0.488 NA   NA
 3060096 3060097 VC274080_0255 VC274080_0256     TRUE 0.942 11.000 0.312 NA   NA
 3060097 3060098 VC274080_0256 VC274080_0257     TRUE 0.927 -3.000 0.190 1.000   NA
 3060098 3060099 VC274080_0257 VC274080_0258     FALSE 0.164 116.000 0.077 NA   NA
 3060100 3060101 VC274080_0259 VC274080_0260     FALSE 0.091 66.000 0.031 1.000   NA
 3060102 3060103 VC274080_0261 VC274080_0262     TRUE 0.700 17.000 0.115 NA   NA
 3060103 3060104 VC274080_0262 VC274080_0263     TRUE 0.901 11.000 0.188 NA   NA
 3060104 3060105 VC274080_0263 VC274080_0264     FALSE 0.374 110.000 0.159 NA   NA
 3060105 3060106 VC274080_0264 VC274080_0265     TRUE 0.938 2.000 0.259 NA N NA
 3060106 3060107 VC274080_0265 VC274080_0266     FALSE 0.010 216.000 0.000 NA N NA
 3060107 3060108 VC274080_0266 VC274080_0268     TRUE 0.959 4.000 0.312 1.000   NA
 3060109 3060110 VC274080_0267 VC274080_0269     FALSE 0.573 10.000 0.024 NA   NA
 3060111 3060112 VC274080_0270 VC274080_0271     FALSE 0.472 40.000 0.128 NA   NA
 3060112 3060113 VC274080_0271 VC274080_0272     TRUE 0.715 33.000 0.240 1.000   NA
 3060113 3060114 VC274080_0272 VC274080_0273     TRUE 0.895 16.000 0.087 0.065   NA
 3060114 3060115 VC274080_0273 VC274080_0274     TRUE 0.690 13.000 0.087 NA   NA
 3060115 3060116 VC274080_0274 VC274080_0275     FALSE 0.024 222.000 0.000 NA   NA
 3060119 3060120 VC274080_0278 VC274080_0279 tkt tal FALSE 0.553 97.000 0.105 1.000 Y NA
 3060122 3060123 VC274080_0281 VC274080_0282     TRUE 0.594 22.000 0.106 NA   NA
 3060123 3060124 VC274080_0282 VC274080_0283     FALSE 0.019 184.000 0.025 NA   NA
 3060125 3060126 VC274080_0843 VC274080_0844     FALSE 0.121 193.000 0.203 NA   NA
 3060126 3060127 VC274080_0844 VC274080_0845     FALSE 0.311 21.000 0.016 NA   NA
 3060127 3060128 VC274080_0845 VC274080_0847     FALSE 0.008 305.000 0.000 NA   NA
 3060130 3060131 VC274080_0848 VC274080_0849 guaB guaA TRUE 0.918 107.000 0.190 0.001 Y NA
 3060131 3060132 VC274080_0849 VC274080_0850 guaA   FALSE 0.018 236.000 0.000 1.000   NA
 3060132 3060133 VC274080_0850 VC274080_0851     FALSE 0.083 191.000 0.143 NA   NA
 3060133 3060134 VC274080_0851 VC274080_0852   vibB FALSE 0.008 312.000 0.000 NA   NA
 3060135 3060136 VC274080_0853 VC274080_0854 vibE vibC TRUE 0.971 11.000 0.255 1.000 Y NA
 3060139 3060140 VC274080_0857 VC274080_0858 viuP viuD TRUE 0.991 -3.000 0.739 1.000 Y NA
 3060140 3060141 VC274080_0858 VC274080_0859 viuD viuG TRUE 0.991 -21.000 0.447 0.060 Y NA
 3060141 3060142 VC274080_0859 VC274080_0860 viuG viuC TRUE 0.641 117.000 0.173 1.000 Y NA
 3060142 3060143 VC274080_0860 VC274080_0861 viuC vibD TRUE 0.621 -69.000 0.115 1.000 N NA
 3060143 3060144 VC274080_0861 VC274080_0862 vibD   TRUE 0.917 10.000 0.269 1.000 N NA
 3060144 3060145 VC274080_0862 VC274080_0863     FALSE 0.009 218.000 0.000 1.000 N NA
 3060146 3060147 VC274080_0864 VC274080_0865   dadA FALSE 0.020 378.000 0.000 1.000 Y NA
 3060148 3060149 VC274080_0866 VC274080_0867     FALSE 0.055 125.000 0.079 NA N NA
 3060149 3060150 VC274080_0867 VC274080_0868     FALSE 0.052 166.000 0.063 NA   NA
 3060151 3060152 VC274080_0869 VC274080_0870 citB citA TRUE 0.985 14.000 1.000 1.000 Y NA
 3060152 3060153 VC274080_0870 VC274080_0871 citA oadB-2 FALSE 0.283 71.000 0.159 1.000 N NA
 3060153 3060154 VC274080_0871 VC274080_0872 oadB-2 oadA-2 TRUE 0.995 16.000 0.886 0.002 Y NA
 3060154 3060155 VC274080_0872 VC274080_0873 oadA-2   TRUE 0.998 1.000 0.720 0.002 Y NA
 3060155 3060156 VC274080_0873 VC274080_0874   citS TRUE 0.614 95.000 0.140 1.000 Y NA
 3060157 3060158 VC274080_0875 VC274080_0876 citC citD TRUE 0.692 52.000 0.128 1.000 Y NA
 3060158 3060159 VC274080_0876 VC274080_0877 citD citE TRUE 0.994 -3.000 0.537 0.001 N NA
 3060159 3060160 VC274080_0877 VC274080_0878 citE citF TRUE 0.959 -64.000 0.104 0.001 N NA
 3060160 3060161 VC274080_0878 VC274080_0879 citF citX TRUE 0.724 -3.000 0.108 1.000 N NA
 3060161 3060162 VC274080_0879 VC274080_0880 citX citG TRUE 0.837 59.000 0.400 1.000 Y NA
 3060162 3060163 VC274080_0880 VC274080_0881 citG   FALSE 0.006 347.000 0.000 NA   NA
 3060163 3060164 VC274080_0881 VC274080_0882     FALSE 0.095 75.000 0.013 NA   NA
 3060168 3060169 VC274080_0886 VC274080_0887     FALSE 0.281 192.000 0.571 NA   NA
 3060170 3060171 VC274080_0888 VC274080_0889     FALSE 0.235 70.000 0.097 NA   NA
 3060171 3060172 VC274080_0889 VC274080_0890     TRUE 0.828 1.000 0.093 1.000   NA
 3060172 3060173 VC274080_0890 VC274080_0891     FALSE 0.003 428.000 0.000 1.000   NA
 3060173 3060174 VC274080_0891 VC274080_0892     TRUE 0.917 -15.000 0.219 NA   NA
 3060176 3060177 VC274080_0894 VC274080_0895     FALSE 0.007 322.000 0.000 NA   NA
 3060177 3060178 VC274080_0895 VC274080_0896   aldA-1 FALSE 0.006 342.000 0.000 NA   NA
 3060179 3060180 VC274080_0897 VC274080_0898 tagA   FALSE 0.554 113.000 0.300 NA   NA
 3060180 3060181 VC274080_0898 VC274080_0899     TRUE 0.623 -3.000 0.015 NA   NA
 3060181 3060182 VC274080_0899 VC274080_0900   tagD FALSE 0.087 110.000 0.007 1.000   NA
 3060184 3060185 VC274080_0902 VC274080_0903 tcpP tcpH TRUE 0.967 -15.000 0.600 NA   NA
 3060185 3060186 VC274080_0903 VC274080_0904 tcpH tcpA FALSE 0.003 540.000 0.000 NA   NA
 3060186 3060187 VC274080_0904 VC274080_0905 tcpA tcpB TRUE 0.644 80.000 0.400 NA   NA
 3060187 3060188 VC274080_0905 VC274080_0906 tcpB tcpQ TRUE 0.975 0.000 0.500 NA   NA
 3060188 3060189 VC274080_0906 VC274080_0907 tcpQ tcpC TRUE 0.978 3.000 0.583 NA   NA
 3060189 3060190 VC274080_0907 VC274080_0908 tcpC tcpR TRUE 0.953 -7.000 0.333 NA   NA
 3060190 3060191 VC274080_0908 VC274080_0909 tcpR tcpD TRUE 0.969 -12.000 0.600 NA   NA
 3060191 3060192 VC274080_0909 VC274080_0910 tcpD tcpS TRUE 0.956 16.000 0.800 NA   NA
 3060192 3060193 VC274080_0910 VC274080_0911 tcpS tcpT TRUE 0.954 -10.000 0.364 NA   NA
 3060193 3060194 VC274080_0911 VC274080_0912 tcpT tcpE TRUE 0.984 -25.000 0.636 1.000 Y NA
 3060194 3060195 VC274080_0912 VC274080_0913 tcpE tcpF TRUE 0.958 10.000 0.375 NA   NA
 3060195 3060196 VC274080_0913 VC274080_0914 tcpF tcpN/toxT FALSE 0.031 207.000 0.000 NA   NA
 3060196 3060197 VC274080_0914 VC274080_0915 tcpN/toxT tcpJ TRUE 0.951 0.000 0.333 1.000 N NA
 3060197 3060198 VC274080_0915 VC274080_0916 tcpJ acfB TRUE 0.983 7.000 0.333 1.000 Y NA
 3060198 3060199 VC274080_0916 VC274080_0917 acfB acfC TRUE 0.985 6.000 1.000 NA   NA
 3060199 3060200 VC274080_0917 VC274080_0918 acfC   FALSE 0.386 16.000 0.019 NA   NA
 3060200 3060201 VC274080_0918 VC274080_0919   tagE-1 TRUE 0.595 9.000 0.019 NA   NA
 3060201 3060202 VC274080_0919 VC274080_0920 tagE-1   FALSE 0.014 823.000 0.000 0.033   NA
 3060203 3060204 VC274080_0921 VC274080_0922     FALSE 0.002 720.000 0.000 NA   NA
 3060204 3060205 VC274080_0922 VC274080_0923   ssrA FALSE 0.077 167.000 0.000 NA   NA
 3060205 3060206 VC274080_0923 VC274080_0924 ssrA smpB FALSE 0.219 69.000 0.000 NA   NA
 3060207 3060208 VC274080_0925 VC274080_0926     TRUE 0.880 -3.000 0.124 NA   NA
 3060209 3060210 VC274080_0927 VC274080_0928 smpA recN FALSE 0.013 108.000 0.049 1.000 N NA
 3060210 3060211 VC274080_0928 VC274080_0929 recN   FALSE 0.239 130.000 0.170 1.000 N NA
 3060214 3060215 VC274080_0932 VC274080_0933 dnaK dnaJ FALSE 0.581 201.000 0.236 0.004 Y NA
 3060217 3060218 VC274080_0935 VC274080_0936     TRUE 0.984 -31.000 0.652 NA Y NA
 3060218 3060219 VC274080_0936 VC274080_0937     TRUE 0.979 -9.000 0.824 NA   NA
 3060219 3060220 VC274080_0937 VC274080_0938     TRUE 0.958 -10.000 0.410 NA   NA
 3060220 3060221 VC274080_0938 VC274080_0939     FALSE 0.002 398.000 0.000 NA N NA
 3060221 3060222 VC274080_0939 VC274080_0940   yfhC FALSE 0.014 69.000 0.025 NA N NA
 3060223 3060224 VC274080_0941 VC274080_0942     FALSE 0.022 179.000 0.026 NA   NA
 3060224 3060225 VC274080_0942 VC274080_0943     TRUE 0.648 0.000 0.026 NA   NA
 3060226 3060227 VC274080_0944 VC274080_0945   purL TRUE 0.620 -3.000 0.021 NA   NA
 3060227 3060228 VC274080_0945 VC274080_0946 purL tnpA FALSE 0.021 175.000 0.000 1.000 N NA
 3060229 3060230 VC274080_0947 VC274080_0948     TRUE 0.968 6.000 0.421 NA   NA
 3060230 3060231 VC274080_0948 VC274080_0949     FALSE 0.232 103.000 0.101 NA   NA
 3060231 3060232 VC274080_0949 VC274080_0950   proS FALSE 0.007 242.000 0.008 NA   NA
 3060232 3060233 VC274080_0950 VC274080_0951 proS   FALSE 0.012 226.000 0.048 NA   NA
 3060234 3060235 VC274080_0952 VC274080_0953     TRUE 0.968 -3.000 0.083 0.014   NA
 3060235 3060236 VC274080_0953 VC274080_0954     FALSE 0.020 183.000 0.014 NA   NA
 3060237 3060238 VC274080_0955 VC274080_0956     TRUE 0.626 -3.000 0.027 NA   NA
 3060240 3060241 VC274080_0957 VC274080_0959     TRUE 0.823 4.000 0.000 NA   NA
 3060242 3060243 VC274080_1775 VC274080_1776   smtA TRUE 0.935 12.000 0.325 NA   NA
 3060246 3060247 VC274080_1779 VC274080_1780 torD   FALSE 0.004 407.000 0.000 1.000   NA
 3060247 3060248 VC274080_1780 VC274080_1781     FALSE 0.024 359.000 0.000 NA Y NA
 3060248 3060249 VC274080_1781 VC274080_1782     FALSE 0.017 355.000 0.190 NA   NA
 3060249 3060250 VC274080_1782 VC274080_1783     TRUE 0.738 34.000 0.270 NA   NA
 3060251 3060252 VC274080_1784 VC274080_1785   glgA FALSE 0.028 188.000 0.064 1.000   NA
 3060252 3060253 VC274080_1785 VC274080_1786 glgA glgC-1 TRUE 0.947 2.000 0.063 1.000 Y NA
 3060258 3060259 VC274080_1791 VC274080_1792 aat   TRUE 0.982 4.000 0.285 1.000 Y NA
 3060259 3060260 VC274080_1792 VC274080_1793   infA FALSE 0.052 84.000 0.078 1.000 N NA
 3060261 3060262 VC274080_1794 VC274080_1795     FALSE 0.003 505.000 0.085 NA   NA
 3060262 3060263 VC274080_1795 VC274080_1796     FALSE 0.454 56.000 0.164 1.000   NA
 3060264 3060265 VC274080_1797 VC274080_1798     TRUE 0.708 -21.000 0.080 NA   NA
 3060265 3060266 VC274080_1798 VC274080_1800     FALSE 0.406 45.000 0.120 NA   NA
 3060267 3060268 VC274080_1799 VC274080_1801 gabD   TRUE 0.885 18.000 0.429 1.000 N NA
 3060269 3060270 VC274080_1802 VC274080_1803     TRUE 0.930 -100.000 0.364 NA   NA
 3060270 3060271 VC274080_1803 VC274080_1804     TRUE 0.971 11.000 0.679 NA   NA
 3060273 3060274 VC274080_1806 VC274080_1807 pqiA pqiB TRUE 0.983 -3.000 0.819 NA   NA
 3060274 3060275 VC274080_1807 VC274080_1808 pqiB   TRUE 0.974 -3.000 0.531 NA   NA
 3060275 3060276 VC274080_1808 VC274080_1809     FALSE 0.026 216.000 0.000 NA   NA
 3060276 3060277 VC274080_1809 VC274080_1810     TRUE 0.940 0.000 0.273 NA N NA
 3060277 3060278 VC274080_1810 VC274080_1811     FALSE 0.028 212.000 0.000 NA   NA
 3060278 3060279 VC274080_1811 VC274080_1812     FALSE 0.008 313.000 0.000 NA   NA
 3060279 3060280 VC274080_1812 VC274080_1813     TRUE 0.911 75.000 0.667 0.006   NA
 3060281 3060282 VC274080_1814 VC274080_1815     TRUE 0.944 -9.000 0.293 NA   NA
 3060282 3060283 VC274080_1815 VC274080_1816     TRUE 0.902 -3.000 0.147 NA   NA
 3060283 3060284 VC274080_1816 VC274080_1817     TRUE 0.957 -7.000 0.360 NA   NA
 3060284 3060285 VC274080_1817 VC274080_1818     FALSE 0.142 45.000 0.027 NA   NA
 3060285 3060286 VC274080_1818 VC274080_1819     FALSE 0.281 28.000 0.048 NA   NA
 3060286 3060287 VC274080_1819 VC274080_1820     TRUE 0.976 -7.000 0.700 NA   NA
 3060287 3060288 VC274080_1820 VC274080_1821     TRUE 0.921 1.000 0.160 NA   NA
 3060288 3060289 VC274080_1821 VC274080_1822     TRUE 0.977 -43.000 0.138 0.053 Y NA
 3060289 3060290 VC274080_1822 VC274080_1823     FALSE 0.237 141.000 0.138 NA   NA
 3060290 3060291 VC274080_1823 VC274080_1824     TRUE 0.951 -18.000 0.389 NA   NA
 3060293 3060294 VC274080_1826 VC274080_1827     TRUE 0.954 15.000 0.700 NA   NA
 3060294 3060295 VC274080_1827 VC274080_1828     FALSE 0.212 182.000 0.300 NA   NA
 3060295 3060296 VC274080_1828 VC274080_1829     FALSE 0.170 129.000 0.130 1.000 N NA
 3060296 3060297 VC274080_1829 VC274080_1830     TRUE 0.700 38.000 0.348 1.000 N NA
 3060297 3060298 VC274080_1830 VC274080_1831     TRUE 0.988 8.000 0.524 NA Y NA
 3060298 3060299 VC274080_1831 VC274080_1832   dctP-1 TRUE 0.924 51.000 0.909 NA Y NA
 3060300 3060301 VC274080_1833 VC274080_1834     TRUE 0.955 -12.000 0.143 1.000 Y NA
 3060301 3060302 VC274080_1834 VC274080_1835   nagA-2 TRUE 0.990 4.000 0.600 1.000 Y NA
 3060302 3060303 VC274080_1835 VC274080_1836 nagA-2 nanH FALSE 0.025 345.000 0.000 1.000 Y NA
 3060305 3060306 VC274080_1838 VC274080_1839     TRUE 0.983 3.000 0.750 NA   NA
 3060307 3060308 VC274080_1840 VC274080_1841   orfB TRUE 0.814 -3.000 0.000 NA   NA
 3060308 3060309 VC274080_1841 VC274080_1842 orfB orfA TRUE 0.983 -3.000 0.000 0.053 Y NA
 3060309 3060310 VC274080_1842 VC274080_1843 orfA   TRUE 0.811 7.000 0.000 NA   NA
 3060310 3060311 VC274080_1843 VC274080_1844     FALSE 0.155 135.000 0.000 NA   NA
 3060311 3060312 VC274080_1844 VC274080_1845     FALSE 0.283 49.000 0.000 NA   NA
 3060312 3060313 VC274080_1845 VC274080_1846     FALSE 0.266 55.000 0.000 NA   NA
 3060313 3060314 VC274080_1846 VC274080_1847     FALSE 0.580 19.000 0.000 NA   NA
 3060314 3060315 VC274080_1847 VC274080_1848     TRUE 0.761 -13.000 0.000 NA   NA
 3060315 3060316 VC274080_1848 VC274080_1849     FALSE 0.002 810.000 0.000 NA   NA
 3060316 3060317 VC274080_1849 VC274080_1850     TRUE 0.828 3.000 0.000 NA   NA
 3060317 3060318 VC274080_1850 VC274080_1851     TRUE 0.951 -70.000 0.571 1.000   NA
 3060318 3060319 VC274080_1851 VC274080_1852     TRUE 0.811 7.000 0.000 NA   NA
 3060319 3060320 VC274080_1852 VC274080_1853     TRUE 0.830 2.000 0.000 NA   NA
 3060321 3060322 VC274080_1854 VC274080_1855     FALSE 0.022 227.000 0.000 NA   NA
 3060322 3060323 VC274080_1855 VC274080_1856     TRUE 0.755 51.000 0.500 NA   NA
 3060323 3060324 VC274080_1856 VC274080_1857     TRUE 0.753 107.000 0.750 NA   NA
 3060329 3060330 VC274080_1861 VC274080_1863     FALSE 0.107 124.000 0.052 NA   NA
 3060331 3060332 VC274080_1864 VC274080_1865 cry1   FALSE 0.179 -3.000 0.036 1.000 N NA
 3060333 3060334 VC274080_1866 VC274080_1867     FALSE 0.086 97.000 0.020 NA   NA
 3060335 3060336 VC274080_1868 VC274080_1869 aldA-2 frvA FALSE 0.002 333.000 0.000 1.000 N NA
 3060336 3060337 VC274080_1869 VC274080_1870 frvA frwBC TRUE 0.996 12.000 1.000 0.009 Y NA
 3060339 3060340 VC274080_1872 VC274080_1874 frwB   TRUE 0.997 9.000 0.679 0.009 Y NA
 3060342 3060343 VC274080_1875 VC274080_1876 fruA-1 manA-2 FALSE 0.567 116.000 0.333 1.000   NA
 3060344 3060345 VC274080_1877 VC274080_1878     FALSE 0.006 336.000 0.000 1.000   NA
 3060347 3060348 VC274080_1880 VC274080_1881 nadA   FALSE 0.021 174.000 0.013 1.000   NA
 3060348 3060349 VC274080_1881 VC274080_1882   pal TRUE 0.881 16.000 0.278 1.000   NA
 3060351 3060352 VC274080_A0091 VC274080_A0090   phrB-2 FALSE 0.557 9.000 0.023 1.000   NA
 3060352 3060353 VC274080_A0090 VC274080_A0089 phrB-2   FALSE 0.151 10.000 0.025 1.000 N NA
 3060353 3060354 VC274080_A0089 VC274080_A0088     TRUE 0.840 -10.000 0.119 NA   NA
 3060355 3060356 VC274080_A0087 VC274080_A0086 deoD-2   TRUE 0.964 -28.000 0.636 1.000   NA
 3060356 3060357 VC274080_A0086 VC274080_A0085     FALSE 0.382 119.000 0.182 1.000   NA
 3060357 3060358 VC274080_A0085 VC274080_A0084     TRUE 0.985 -19.000 0.385 0.013   NA
 3060358 3060359 VC274080_A0084 VC274080_A0083     FALSE 0.407 135.000 0.231 NA   NA
 3060359 3060360 VC274080_A0083 VC274080_A0082     TRUE 0.950 0.000 0.238 NA   NA
 3060361 3060362 VC274080_A0081 VC274080_A0080     TRUE 0.797 9.000 0.000 NA   NA
 3060362 3060363 VC274080_A0080 VC274080_A0079     FALSE 0.020 233.000 0.000 NA   NA
 3060365 3060366 VC274080_A0077 VC274080_A0076 glts   FALSE 0.256 198.000 0.571 NA   NA
 3060367 3060368 VC274080_A0075 VC274080_A0074     FALSE 0.042 199.000 0.101 NA   NA
 3060368 3060369 VC274080_A0074 VC274080_A0073     TRUE 0.977 -3.000 0.615 NA   NA
 3060369 3060370 VC274080_A0073 VC274080_A0072     TRUE 0.863 14.000 0.194 NA   NA
 3060370 3060371 VC274080_A0072 VC274080_A0071     FALSE 0.006 341.000 0.000 NA   NA
 3060375 3060376 VC274080_A0067 VC274080_A0066     FALSE 0.398 98.000 0.174 NA   NA
 3060377 3060378 VC274080_A0065 VC274080_A0064     TRUE 0.963 1.000 0.324 1.000   NA
 3060378 3060379 VC274080_A0064 VC274080_A0063   chiA-2 FALSE 0.002 366.000 0.000 1.000 N NA
 3060382 3060383 VC274080_A0060 VC274080_A0059     FALSE 0.133 116.000 0.066 1.000   NA
 3060384 3060385 VC274080_A0058 VC274080_A0057     FALSE 0.087 103.000 0.024 NA   NA
 3060385 3060386 VC274080_A0057 VC274080_A0056     TRUE 0.968 1.000 0.357 NA   NA
 3060386 3060387 VC274080_A0056 VC274080_A0055     TRUE 0.971 -3.000 0.467 NA   NA
 3060387 3060388 VC274080_A0055 VC274080_A0054   vgrG-2 TRUE 0.902 0.000 0.133 NA   NA
 3060388 3060389 VC274080_A0054 VC274080_A0053 vgrG-2 hcp-2 FALSE 0.170 128.000 0.000 NA   NA
 3060389 3060390 VC274080_A0053 VC274080_A0052 hcp-2 glgB FALSE 0.004 395.000 0.000 NA   NA
 3060390 3060391 VC274080_A0052 VC274080_A0051 glgB malQ FALSE 0.545 206.000 0.235 0.006 Y NA
 3060391 3060392 VC274080_A0051 VC274080_A0050 malQ malP TRUE 0.912 86.000 0.314 0.020 Y NA
 3060396 3060397 VC274080_A0046 VC274080_A0045 garR   FALSE 0.143 43.000 0.037 1.000   NA
 3060397 3060398 VC274080_A0045 VC274080_A0044     FALSE 0.427 88.000 0.184 NA   NA
 3060398 3060399 VC274080_A0044 VC274080_A0043     FALSE 0.559 94.000 0.304 NA   NA
 3060402 3060403 VC274080_A0040 VC274080_A0039     FALSE 0.031 207.000 0.000 NA   NA
 3060403 3060404 VC274080_A0039 VC274080_A0038     TRUE 0.976 8.000 0.800 1.000 N NA
 3060406 3060407 VC274080_A0036 VC274080_A0035     FALSE 0.037 174.000 0.057 NA   NA
 3060407 3060408 VC274080_A0035 VC274080_A0034     TRUE 0.978 11.000 0.923 NA   NA
 3060408 3060409 VC274080_A0034 VC274080_A0033     TRUE 0.943 16.000 0.610 NA   NA
 3060409 3060410 VC274080_A0033 VC274080_A0032     TRUE 0.966 10.000 0.500 NA   NA
 3060410 3060411 VC274080_A0032 VC274080_A0031     FALSE 0.004 379.000 0.000 1.000   NA
 3060411 3060412 VC274080_A0031 VC274080_A0030     TRUE 0.961 5.000 0.333 1.000   NA
 3060412 3060413 VC274080_A0030 VC274080_A0029     TRUE 0.990 -10.000 0.917 1.000 Y NA
 3060414 3060415 VC274080_A0028 VC274080_A0027     FALSE 0.013 255.000 0.000 1.000   NA
 3060415 3060416 VC274080_A0027 VC274080_A0026     TRUE 0.942 -81.000 0.472 1.000   NA
 3060416 3060417 VC274080_A0026 VC274080_A0025     TRUE 0.993 -19.000 0.558 0.057 Y NA
 3060417 3060418 VC274080_A0025 VC274080_A0024     TRUE 0.993 -7.000 0.431 0.057 Y NA
 3060419 3060420 VC274080_A0023 VC274080_A0022   cheY-4 TRUE 0.972 -7.000 0.216 NA Y NA
 3060420 3060421 VC274080_A0022 VC274080_A0021 cheY-4 cheA-3 TRUE 0.892 49.000 0.595 1.000 Y NA
 3060421 3060422 VC274080_A0021 VC274080_A0020 cheA-3 cheW-3 TRUE 0.993 9.000 0.280 0.025 Y NA
 3060422 3060423 VC274080_A0020 VC274080_A0019 cheW-3 cheW-2 TRUE 0.994 -3.000 0.304 0.025 Y NA
 3060423 3060424 VC274080_A0019 VC274080_A0018 cheW-2   TRUE 0.987 14.000 0.304 0.025 Y NA
 3060424 3060425 VC274080_A0018 VC274080_A0017   cheR-3 TRUE 0.971 15.000 0.500 1.000 Y NA
 3060425 3060426 VC274080_A0017 VC274080_A0016 cheR-3   TRUE 0.901 -61.000 0.078 1.000 Y NA
 3060426 3060427 VC274080_A0016 VC274080_A0015   cheB-3 TRUE 0.980 -3.000 0.267 1.000 Y NA
 3060427 3060428 VC274080_A0015 VC274080_A0014 cheB-3   TRUE 0.931 43.000 0.227 0.025 Y NA
 3060428 3060429 VC274080_A0014 VC274080_A0013     TRUE 0.967 10.000 0.184 NA Y NA
 3060429 3060430 VC274080_A0013 VC274080_A0012     TRUE 0.922 24.000 0.286 NA Y NA
 3060430 3060431 VC274080_A0012 VC274080_A0011     FALSE 0.005 259.000 0.000 1.000 N NA
 3060432 3060433 VC274080_A0010 VC274080_A0009     TRUE 0.827 15.000 0.234 1.000 N NA
 3060433 3060434 VC274080_A0009 VC274080_A0008     TRUE 0.973 6.000 0.514 NA   NA
 3060434 3060435 VC274080_A0008 VC274080_A0007     TRUE 0.926 9.000 0.200 NA   NA
 3060437 3060438 VC274080_A0005 VC274080_A0004     FALSE 0.193 100.000 0.091 1.000   NA
 3060438 3060439 VC274080_A0004 VC274080_A0003     TRUE 0.695 68.000 0.500 NA   NA
 3060439 3060440 VC274080_A0003 VC274080_A0002     TRUE 0.965 -33.000 0.667 NA   NA
 3060440 3060441 VC274080_A0002 VC274080_A0001     TRUE 0.785 -7.000 0.000 NA   NA
 3060443 3060444 VC274080_A0319 VC274080_A0320     FALSE 0.005 359.000 0.000 NA   NA
 3060444 3060445 VC274080_A0320 VC274080_A0321     FALSE 0.222 68.000 0.000 NA   NA
 3060445 3060446 VC274080_A0321 VC274080_A0322     TRUE 0.811 7.000 0.000 NA   NA
 3060446 3060447 VC274080_A0322 VC274080_A0323     FALSE 0.184 121.000 0.000 NA   NA
 3060447 3060448 VC274080_A0323 VC274080_A0324     FALSE 0.428 29.000 0.000 NA   NA
 3060448 3060449 VC274080_A0324 VC274080_A0325   higA TRUE 0.756 11.000 0.000 NA   NA
 3060452 3060453 VC274080_A0328 VC274080_A0329     FALSE 0.004 424.000 0.000 NA   NA
 3060454 3060455 VC274080_A0330 VC274080_A0331     FALSE 0.125 147.000 0.000 NA   NA
 3060455 3060456 VC274080_A0331 VC274080_A0332     FALSE 0.004 421.000 0.000 NA   NA
 3060456 3060457 VC274080_A0332 VC274080_A0333     FALSE 0.256 57.000 0.000 NA   NA
 3060457 3060458 VC274080_A0333 VC274080_A0334     FALSE 0.241 61.000 0.000 NA   NA
 3060458 3060459 VC274080_A0334 VC274080_A0335   mccF-1 FALSE 0.026 216.000 0.000 NA   NA
 3060459 3060460 VC274080_A0335 VC274080_A0337 mccF-1   FALSE 0.256 57.000 0.000 NA   NA
 3060462 3060463 VC274080_A0338 VC274080_A0339     FALSE 0.091 159.000 0.000 NA   NA
 3060463 3060464 VC274080_A0339 VC274080_A0340     FALSE 0.224 67.000 0.000 NA   NA
 3060464 3060465 VC274080_A0340 VC274080_A0341     FALSE 0.160 133.000 0.000 NA   NA
 3060465 3060466 VC274080_A0341 VC274080_A0342     FALSE 0.137 141.000 0.000 NA   NA
 3060466 3060467 VC274080_A0342 VC274080_A0343     FALSE 0.003 534.000 0.000 NA   NA
 3060467 3060468 VC274080_A0343 VC274080_A0344   blc-2 TRUE 0.683 -88.000 0.000 NA   NA
 3060468 3060469 VC274080_A0344 VC274080_A0345 blc-2   FALSE 0.219 69.000 0.000 NA   NA
 3060469 3060470 VC274080_A0345 VC274080_A0346     FALSE 0.003 543.000 0.000 NA   NA
 3060470 3060471 VC274080_A0346 VC274080_A0347     TRUE 0.814 -3.000 0.000 NA   NA
 3060472 3060473 VC274080_A0348 VC274080_A0349   dinJ TRUE 0.929 -34.000 0.308 NA   NA
 3060473 3060474 VC274080_A0349 VC274080_A0350 dinJ   FALSE 0.019 236.000 0.000 NA   NA
 3060477 3060478 VC274080_A0353 VC274080_A0354     FALSE 0.173 127.000 0.000 NA   NA
 3060478 3060479 VC274080_A0354 VC274080_A0355     TRUE 0.625 -40.000 0.065 NA   NA
 3060479 3060480 VC274080_A0355 VC274080_A0356     FALSE 0.214 73.000 0.000 NA   NA
 3060480 3060481 VC274080_A0356 VC274080_A0357     FALSE 0.038 193.000 0.000 1.000   NA
 3060481 3060482 VC274080_A0357 VC274080_A0358     FALSE 0.007 321.000 0.000 NA   NA
 3060482 3060483 VC274080_A0358 VC274080_A0359     FALSE 0.129 145.000 0.000 NA   NA
 3060483 3060484 VC274080_A0359 VC274080_A0360     FALSE 0.148 137.000 0.000 NA   NA
 3060484 3060485 VC274080_A0360 VC274080_A0361     FALSE 0.014 258.000 0.000 NA   NA
 3060485 3060486 VC274080_A0361 VC274080_A0362     FALSE 0.002 789.000 0.000 NA   NA
 3060486 3060487 VC274080_A0362 VC274080_A0363     FALSE 0.129 145.000 0.000 NA   NA
 3060487 3060488 VC274080_A0363 VC274080_A0364     FALSE 0.256 57.000 0.000 NA   NA
 3060490 3060491 VC274080_A0366 VC274080_A0367     FALSE 0.006 335.000 0.000 NA   NA
 3060491 3060492 VC274080_A0367 VC274080_A0368     FALSE 0.188 119.000 0.000 NA   NA
 3060492 3060493 VC274080_A0368 VC274080_A0369     FALSE 0.114 150.000 0.000 NA   NA
 3060493 3060494 VC274080_A0369 VC274080_A0370     FALSE 0.148 137.000 0.000 NA   NA
 3060494 3060495 VC274080_A0370 VC274080_A0371     FALSE 0.003 565.000 0.000 NA   NA
 3060495 3060496 VC274080_A0371 VC274080_A0372     FALSE 0.004 439.000 0.000 NA   NA
 3060498 3060499 VC274080_A0374 VC274080_A0375     FALSE 0.002 840.000 0.000 NA   NA
 3060499 3060500 VC274080_A0375 VC274080_A0376     FALSE 0.016 244.000 0.000 NA   NA
 3060500 3060501 VC274080_A0376 VC274080_A0377     TRUE 0.841 56.000 1.000 NA   NA
 3060501 3060502 VC274080_A0377 VC274080_A0378     FALSE 0.365 36.000 0.000 NA   NA
 3060502 3060503 VC274080_A0378 VC274080_A0379     FALSE 0.044 189.000 0.000 NA   NA
 3060503 3060504 VC274080_A0379 VC274080_A0380     FALSE 0.365 36.000 0.000 NA   NA
 3060504 3060505 VC274080_A0380 VC274080_A0381     TRUE 0.805 8.000 0.000 NA   NA
 3060505 3060506 VC274080_A0381 VC274080_A0382     FALSE 0.580 19.000 0.000 NA   NA
 3060506 3060507 VC274080_A0382 VC274080_A0383     FALSE 0.132 144.000 0.000 NA   NA
 3060507 3060508 VC274080_A0383 VC274080_A0384     FALSE 0.002 704.000 0.000 NA   NA
 3060508 3060509 VC274080_A0384 VC274080_A0385     FALSE 0.114 150.000 0.000 NA   NA
 3060509 3060510 VC274080_A0385 VC274080_A0386     FALSE 0.256 57.000 0.000 NA   NA
 3060510 3060511 VC274080_A0386 VC274080_A0387     TRUE 0.985 7.000 1.000 NA   NA
 3060511 3060512 VC274080_A0387 VC274080_A0388     FALSE 0.053 180.000 0.000 NA   NA
 3060512 3060513 VC274080_A0388 VC274080_A0389     FALSE 0.200 97.000 0.000 NA   NA
 3060513 3060514 VC274080_A0389 VC274080_A0390     FALSE 0.002 808.000 0.000 NA   NA
 3060514 3060515 VC274080_A0390 VC274080_A0391     FALSE 0.018 240.000 0.000 NA   NA
 3060515 3060516 VC274080_A0391 VC274080_A0392     FALSE 0.011 279.000 0.000 NA   NA
 3060516 3060517 VC274080_A0392 VC274080_A0393     FALSE 0.009 298.000 0.000 NA   NA
 3060517 3060518 VC274080_A0393 VC274080_A0394     FALSE 0.026 216.000 0.000 NA   NA
 3060518 3060519 VC274080_A0394 VC274080_A0395     FALSE 0.003 574.000 0.000 NA   NA
 3060519 3060520 VC274080_A0395 VC274080_A0396     FALSE 0.019 588.000 0.000 0.013   NA
 3060520 3060521 VC274080_A0396 VC274080_A0397     FALSE 0.002 808.000 0.000 NA   NA
 3060521 3060522 VC274080_A0397 VC274080_A0398     TRUE 0.793 -6.000 0.000 NA   NA
 3060522 3060523 VC274080_A0398 VC274080_A0399     FALSE 0.256 57.000 0.000 NA   NA
 3060523 3060524 VC274080_A0399 VC274080_A0400     TRUE 0.975 -31.000 1.000 NA   NA
 3060524 3060525 VC274080_A0400 VC274080_A0401     FALSE 0.092 75.000 0.025 NA   NA
 3060525 3060526 VC274080_A0401 VC274080_A0402     FALSE 0.115 57.000 0.025 NA   NA
 3060528 3060529 VC274080_A0404 VC274080_A0405     TRUE 0.756 11.000 0.000 NA   NA
 3060529 3060530 VC274080_A0405 VC274080_A0406     TRUE 0.803 -3.000 0.000 1.000   NA
 3060530 3060531 VC274080_A0406 VC274080_A0407     FALSE 0.018 238.000 0.000 NA   NA
 3060531 3060532 VC274080_A0407 VC274080_A0408     FALSE 0.002 801.000 0.000 NA   NA
 3060532 3060533 VC274080_A0408 VC274080_A0409     FALSE 0.087 128.000 0.043 NA   NA
 3060533 3060534 VC274080_A0409 VC274080_A0410     FALSE 0.043 185.000 0.083 NA   NA
 3060534 3060535 VC274080_A0410 VC274080_A0411     FALSE 0.007 316.000 0.000 NA   NA
 3060535 3060536 VC274080_A0411 VC274080_A0412     FALSE 0.093 158.000 0.000 NA   NA
 3060536 3060537 VC274080_A0412 VC274080_A0413     FALSE 0.120 57.000 0.031 NA   NA
 3060537 3060538 VC274080_A0413 VC274080_A0414     TRUE 0.763 64.000 0.667 NA   NA
 3060538 3060539 VC274080_A0414 VC274080_A0415     FALSE 0.272 197.000 0.600 NA   NA
 3060539 3060540 VC274080_A0415 VC274080_A0416     TRUE 0.734 67.000 0.600 NA   NA
 3060540 3060541 VC274080_A0416 VC274080_A0417     TRUE 0.967 -40.000 0.750 NA   NA
 3060541 3060542 VC274080_A0417 VC274080_A0418     FALSE 0.579 154.000 0.750 NA   NA
 3060542 3060543 VC274080_A0418 VC274080_A0419     FALSE 0.125 147.000 0.000 NA   NA
 3060543 3060544 VC274080_A0419 VC274080_A0420     FALSE 0.019 237.000 0.000 NA   NA
 3060544 3060545 VC274080_A0420 VC274080_A0421     FALSE 0.011 279.000 0.000 NA   NA
 3060545 3060546 VC274080_A0421 VC274080_A0422     FALSE 0.029 211.000 0.000 NA   NA
 3060546 3060547 VC274080_A0422 VC274080_A0423     TRUE 0.805 157.000 0.750 0.012   NA
 3060547 3060548 VC274080_A0423 VC274080_A0424     TRUE 0.623 148.000 0.750 NA   NA
 3060548 3060549 VC274080_A0424 VC274080_A0425     TRUE 0.831 47.000 0.750 NA   NA
 3060549 3060550 VC274080_A0425 VC274080_A0426     FALSE 0.002 991.000 0.000 NA   NA
 3060551 3060552 VC274080_A0427 VC274080_A0428 orfB orfA TRUE 0.983 -3.000 0.000 0.050 Y NA
 3060554 3060555 VC274080_A0430 VC274080_A0431     TRUE 0.830 1.000 0.000 NA   NA
 3060556 3060557 VC274080_A0432 VC274080_A0433     FALSE 0.114 57.000 0.021 NA   NA
 3060557 3060558 VC274080_A0433 VC274080_A0434     TRUE 0.791 107.000 1.000 NA   NA
 3060558 3060559 VC274080_A0434 VC274080_A0435     TRUE 0.981 -3.000 0.750 NA   NA
 3060559 3060560 VC274080_A0435 VC274080_A0436     FALSE 0.002 1354.000 0.000 NA   NA
 3060560 3060561 VC274080_A0436 VC274080_A0437     TRUE 0.732 -25.000 0.000 NA   NA
 3060561 3060562 VC274080_A0437 VC274080_A0438     TRUE 0.756 11.000 0.000 NA   NA
 3060562 3060563 VC274080_A0438 VC274080_A0439     FALSE 0.005 372.000 0.000 NA   NA
 3060563 3060564 VC274080_A0439 VC274080_A0440     FALSE 0.201 100.000 0.000 NA   NA
 3060564 3060565 VC274080_A0440 VC274080_A0441     FALSE 0.032 205.000 0.000 NA   NA
 3060565 3060566 VC274080_A0441 VC274080_A0442     TRUE 0.588 57.000 0.250 NA   NA
 3060566 3060567 VC274080_A0442 VC274080_A0443     TRUE 0.771 61.000 0.667 NA   NA
 3060567 3060568 VC274080_A0443 VC274080_A0444     TRUE 0.705 -46.000 0.000 NA   NA
 3060568 3060569 VC274080_A0444 VC274080_A0445     FALSE 0.193 116.000 0.000 NA   NA
 3060569 3060570 VC274080_A0445 VC274080_A0446     FALSE 0.080 130.000 0.039 NA   NA
 3060570 3060571 VC274080_A0446 VC274080_A0447     FALSE 0.017 184.000 0.033 1.000   NA
 3060571 3060572 VC274080_A0447 VC274080_A0448     FALSE 0.091 67.000 0.033 1.000   NA
 3060572 3060573 VC274080_A0448 VC274080_A0449     FALSE 0.214 193.000 0.375 NA   NA
 3060573 3060574 VC274080_A0449 VC274080_A0450     FALSE 0.006 336.000 0.000 NA   NA
 3060574 3060575 VC274080_A0450 VC274080_A0451     FALSE 0.022 228.000 0.000 NA   NA
 3060575 3060576 VC274080_A0451 VC274080_A0452     FALSE 0.202 102.000 0.000 NA   NA
 3060576 3060577 VC274080_A0452 VC274080_A0453   blc-3 TRUE 0.683 -88.000 0.000 NA   NA
 3060577 3060578 VC274080_A0453 VC274080_A0454 blc-3   FALSE 0.009 303.000 0.000 NA   NA
 3060578 3060579 VC274080_A0454 VC274080_A0455     FALSE 0.379 179.000 0.667 NA   NA
 3060579 3060580 VC274080_A0455 VC274080_A0456     FALSE 0.425 162.000 0.500 NA   NA
 3060580 3060581 VC274080_A0456 VC274080_A0457     TRUE 0.598 151.000 0.750 NA   NA
 3060581 3060582 VC274080_A0457 VC274080_A0458     FALSE 0.499 151.000 0.500 NA   NA
 3060584 3060585 VC274080_A0460 VC274080_A0461     FALSE 0.019 236.000 0.000 NA   NA
 3060586 3060587 VC274080_A0462 VC274080_A0463     FALSE 0.004 423.000 0.000 NA   NA
 3060587 3060588 VC274080_A0463 VC274080_A0464     FALSE 0.030 208.000 0.000 NA   NA
 3060588 3060589 VC274080_A0464 VC274080_A0465     FALSE 0.015 250.000 0.000 NA   NA
 3060590 3060591 VC274080_A0466 VC274080_A0467     TRUE 0.673 125.000 0.600 NA   NA
 3060591 3060592 VC274080_A0467 VC274080_A0468     FALSE 0.519 163.000 0.750 NA   NA
 3060592 3060593 VC274080_A0468 VC274080_A0469     FALSE 0.385 183.000 0.750 NA   NA
 3060593 3060594 VC274080_A0469 VC274080_A0470     FALSE 0.011 281.000 0.000 NA   NA
 3060594 3060595 VC274080_A0470 VC274080_A0471     FALSE 0.002 761.000 0.000 NA   NA
 3060595 3060596 VC274080_A0471 VC274080_A0472     TRUE 0.688 119.000 0.600 NA   NA
 3060596 3060597 VC274080_A0472 VC274080_A0473     TRUE 0.771 69.000 0.750 NA   NA
 3060597 3060598 VC274080_A0473 VC274080_A0474     TRUE 0.682 82.000 0.500 NA   NA
 3060598 3060599 VC274080_A0474 VC274080_A0475     TRUE 0.859 36.000 0.667 NA   NA
 3060599 3060600 VC274080_A0475 VC274080_A0476     TRUE 0.805 8.000 0.000 NA   NA
 3060600 3060601 VC274080_A0476 VC274080_A0477     FALSE 0.227 66.000 0.000 NA   NA
 3060601 3060602 VC274080_A0477 VC274080_A0478     TRUE 0.972 -3.000 0.500 NA   NA
 3060602 3060603 VC274080_A0478 VC274080_A0479     TRUE 0.835 -18.000 0.125 NA   NA
 3060605 3060606 VC274080_A0481 VC274080_A0482     FALSE 0.061 178.000 0.095 NA   NA
 3060606 3060607 VC274080_A0482 VC274080_A0483     FALSE 0.005 364.000 0.000 NA   NA
 3060607 3060608 VC274080_A0483 VC274080_A0484     FALSE 0.198 114.000 0.000 NA   NA
 3060608 3060609 VC274080_A0484 VC274080_A0485     TRUE 0.743 132.000 1.000 NA   NA
 3060609 3060610 VC274080_A0485 VC274080_A0486     FALSE 0.356 189.000 0.750 NA   NA
 3060610 3060611 VC274080_A0486 VC274080_A0487     FALSE 0.436 174.000 0.750 NA   NA
 3060611 3060612 VC274080_A0487 VC274080_A0488     FALSE 0.523 154.000 0.600 NA   NA
 3060614 3060615 VC274080_A0490 VC274080_A0491     FALSE 0.332 194.000 0.750 NA   NA
 3060615 3060616 VC274080_A0491 VC274080_A0492     FALSE 0.005 385.000 0.000 NA   NA
 3060616 3060617 VC274080_A0492 VC274080_A0493   mccF-2 FALSE 0.045 188.000 0.000 NA   NA
 3060618 3060619 VC274080_2278 VC274080_2279 map glnD FALSE 0.416 90.000 0.243 1.000 N NA
 3060619 3060620 VC274080_2279 VC274080_2280 glnD   FALSE 0.006 246.000 0.031 NA   NA
 3060621 3060622 VC274080_2281 VC274080_2282 pgpA thiL TRUE 0.905 -3.000 0.206 1.000 N NA
 3060622 3060623 VC274080_2282 VC274080_2283 thiL nusB FALSE 0.440 61.000 0.225 1.000 N NA
 3060623 3060624 VC274080_2283 VC274080_2284 nusB ribE TRUE 0.954 0.000 0.347 1.000 N NA
 3060624 3060625 VC274080_2284 VC274080_2285 ribE ribB/A FALSE 0.345 216.000 0.049 0.002 Y NA
 3060625 3060626 VC274080_2285 VC274080_2286 ribB/A ribE TRUE 0.648 41.000 0.065 1.000 Y NA
 3060626 3060627 VC274080_2286 VC274080_2287 ribE ribD TRUE 0.987 5.000 0.456 1.000 Y NA
 3060627 3060628 VC274080_2287 VC274080_2288 ribD nrdR TRUE 0.739 26.000 0.277 NA N NA
 3060628 3060629 VC274080_2288 VC274080_2289 nrdR proA FALSE 0.012 100.000 0.011 NA N NA
 3060629 3060630 VC274080_2289 VC274080_2290 proA proB TRUE 0.996 9.000 0.281 0.001 Y NA
 3060630 3060631 VC274080_2290 VC274080_2291 proB crl FALSE 0.105 64.000 0.012 NA   NA
 3060631 3060632 VC274080_2291 VC274080_2292 crl   FALSE 0.548 134.000 0.381 NA   NA
 3060632 3060633 VC274080_2292 VC274080_2293   gpt FALSE 0.333 97.000 0.140 NA   NA
 3060633 3060634 VC274080_2293 VC274080_2294 gpt   FALSE 0.261 38.000 0.067 1.000   NA
 3060635 3060636 VC274080_2295 VC274080_2296 pepD   FALSE 0.091 234.000 0.000 0.030 N NA
 3060636 3060637 VC274080_2296 VC274080_2297   rimK TRUE 0.737 -3.000 0.109 1.000 N NA
 3060637 3060638 VC274080_2297 VC274080_2298 rimK   TRUE 0.737 -40.000 0.102 1.000   NA
 3060639 3060640 VC274080_2299 VC274080_2300     FALSE 0.451 157.000 0.500 1.000   NA
 3060640 3060641 VC274080_2300 VC274080_2301     FALSE 0.416 64.000 0.158 NA   NA
 3060641 3060642 VC274080_2301 VC274080_2302   dinP FALSE 0.016 246.000 0.000 NA   NA
 3060642 3060643 VC274080_2302 VC274080_2303 dinP   FALSE 0.141 109.000 0.063 NA   NA
 3060643 3060644 VC274080_2303 VC274080_2304   apbE TRUE 0.924 17.000 0.481 NA   NA
 3060644 3060645 VC274080_2304 VC274080_2305 apbE nqrF TRUE 0.721 47.000 0.519 1.000 N NA
 3060645 3060646 VC274080_2305 VC274080_2306 nqrF nqrE TRUE 0.981 34.000 0.551 0.002 Y NA
 3060646 3060647 VC274080_2306 VC274080_2307 nqrE nqrD TRUE 0.994 8.000 0.188 0.002 Y NA
 3060647 3060648 VC274080_2307 VC274080_2308 nqrD nqrC TRUE 0.996 0.000 0.312 0.002 Y NA
 3060648 3060649 VC274080_2308 VC274080_2309 nqrC nqrB TRUE 0.996 -13.000 0.603 0.002 Y NA
 3060649 3060650 VC274080_2309 VC274080_2310 nqrB nqrA TRUE 0.998 6.000 0.854 0.002 Y NA
 3060650 3060651 VC274080_2310 VC274080_2311 nqrA bolA FALSE 0.001 437.000 0.000 NA N NA
 3060652 3060653 VC274080_2312 VC274080_2313     TRUE 0.924 -3.000 0.248 1.000 N NA
 3060653 3060654 VC274080_2313 VC274080_2314   ppiA TRUE 0.832 -43.000 0.198 1.000 N NA
 3060654 3060655 VC274080_2314 VC274080_2315 ppiA   TRUE 0.674 69.000 0.467 1.000   NA
 3060656 3060657 VC274080_2316 VC274080_2317     TRUE 0.980 -3.000 0.898 NA N NA
 3060657 3060658 VC274080_2317 VC274080_2318     FALSE 0.161 91.000 0.077 1.000   NA
 3060659 3060660 VC274080_2319 VC274080_2320   ompK TRUE 0.970 -28.000 0.000 0.001   NA
 3060660 3060661 VC274080_2320 VC274080_2321 ompK panE FALSE 0.008 139.000 0.011 1.000 N NA
 3060661 3060662 VC274080_2321 VC274080_2322 panE thiJ TRUE 0.909 -3.000 0.155 NA   NA
 3060662 3060663 VC274080_2322 VC274080_2323 thiJ   TRUE 0.608 -16.000 0.048 NA   NA
 3060664 3060665 VC274080_2324 VC274080_2325     TRUE 0.876 5.000 0.122 1.000   NA
 3060665 3060666 VC274080_2325 VC274080_2326   mltA FALSE 0.013 92.000 0.018 1.000 N NA
 3060666 3060667 VC274080_2326 VC274080_2327 mltA   FALSE 0.215 71.000 0.000 NA   NA
 3060668 3060669 VC274080_2328 VC274080_2329 argA   FALSE 0.022 227.000 0.000 NA   NA
 3060670 3060671 VC274080_2330 VC274080_2331 recD recB TRUE 0.998 -3.000 0.688 0.001 Y NA
 3060671 3060672 VC274080_2331 VC274080_2332 recB recC FALSE 0.549 265.000 0.542 0.001 Y NA
 3060672 3060673 VC274080_2332 VC274080_2333 recC   FALSE 0.006 239.000 0.000 1.000 N NA
 3060674 3060675 VC274080_2334 VC274080_2335     FALSE 0.386 116.000 0.173 NA   NA
 3060675 3060676 VC274080_2335 VC274080_2336   dapD FALSE 0.004 407.000 0.000 NA   NA
 3060677 3060678 VC274080_2337 VC274080_2338     FALSE 0.095 103.000 0.044 1.000   NA
 3060679 3060680 VC274080_2339 VC274080_2340     FALSE 0.002 190.000 0.047 1.000 N NA
 3060680 3060681 VC274080_2340 VC274080_2342     TRUE 0.641 -16.000 0.056 NA   NA
 3060685 3060686 VC274080_2345 VC274080_2346     FALSE 0.009 136.000 0.052 NA N NA
 3060686 3060687 VC274080_2346 VC274080_2347     FALSE 0.034 200.000 0.125 NA N NA
 3060688 3060689 VC274080_2348 VC274080_2349 fusA-2 radA FALSE 0.001 271.000 0.002 1.000 N NA
 3060693 3060694 VC274080_2353 VC274080_2354 deoD-1   FALSE 0.211 83.000 0.000 NA   NA
 3060695 3060696 VC274080_2275 VC274080_2274   ompH TRUE 0.964 15.000 0.354 1.000 Y NA
 3060696 3060697 VC274080_2274 VC274080_2273 ompH lpxD TRUE 0.990 10.000 0.814 1.000 Y NA
 3060697 3060698 VC274080_2273 VC274080_2272 lpxD fabZ TRUE 0.724 76.000 0.796 1.000 N NA
 3060698 3060699 VC274080_2272 VC274080_2271 fabZ lpxA TRUE 0.981 2.000 0.850 1.000 N NA
 3060699 3060700 VC274080_2271 VC274080_2270 lpxA lpxB FALSE 0.531 161.000 0.289 1.000 Y NA
 3060700 3060701 VC274080_2270 VC274080_2269 lpxB rnhB TRUE 0.629 25.000 0.186 1.000 N NA
 3060701 3060702 VC274080_2269 VC274080_2268 rnhB dnaE TRUE 0.827 24.000 0.104 1.000 Y NA
 3060702 3060703 VC274080_2268 VC274080_2267 dnaE accA FALSE 0.235 55.000 0.122 1.000 N NA
 3060703 3060704 VC274080_2267 VC274080_2266 accA tilS FALSE 0.124 140.000 0.123 1.000 N NA
 3060704 3060705 VC274080_2266 VC274080_2265 tilS   FALSE 0.028 36.000 0.015 1.000 N NA
 3060705 3060706 VC274080_2265 VC274080_2264     FALSE 0.002 377.000 0.000 1.000 N NA
 3060706 3060707 VC274080_2264 VC274080_2263   glnB-2 FALSE 0.013 154.000 0.067 1.000 N NA
 3060707 3060708 VC274080_2263 VC274080_2262 glnB-2   FALSE 0.257 69.000 0.103 NA   NA
 3060709 3060710 VC274080_2261 VC274080_2260 mltD   FALSE 0.080 72.000 0.020 1.000   NA
 3060713 3060714 VC274080_2257 VC274080_2256 dnaQ   TRUE 0.817 9.000 0.098 NA   NA
 3060716 3060717 VC274080_2254 VC274080_2253 lpcA   FALSE 0.524 63.000 0.229 1.000   NA
 3060718 3060719 VC274080_2252 VC274080_2251 purN purM TRUE 0.995 3.000 0.230 0.002 Y NA
 3060720 3060721 VC274080_2250 VC274080_2249 upp   FALSE 0.007 231.000 0.000 1.000 N NA
 3060722 3060723 VC274080_2248 VC274080_2247     FALSE 0.534 30.000 0.120 NA   NA
 3060723 3060724 VC274080_2247 VC274080_2246     FALSE 0.131 182.000 0.182 NA   NA
 3060730 3060731 VC274080_2240 VC274080_2239     TRUE 0.961 -3.000 0.333 NA   NA
 3060732 3060733 VC274080_2238 VC274080_2237   gltX TRUE 0.965 -19.000 0.016 0.001   NA
 3060733 3060734 VC274080_2237 VC274080_2236 gltX ompA FALSE 0.009 296.000 0.000 1.000   NA
 3060736 3060737 VC274080_2234 VC274080_2233 viuA viuB FALSE 0.036 304.000 0.000 NA Y NA
 3060737 3060738 VC274080_2233 VC274080_2232 viuB vibF FALSE 0.006 246.000 0.000 NA N NA
 3060740 3060741 VC274080_2230 VC274080_2229     TRUE 0.946 8.000 0.260 NA   NA
 3060742 3060743 VC274080_2228 VC274080_2227   flgM TRUE 0.940 98.000 0.361 0.002 Y NA
 3060743 3060744 VC274080_2227 VC274080_2226 flgM   TRUE 0.749 131.000 0.371 NA Y NA
 3060745 3060746 VC274080_2225 VC274080_2224 cheV-3 cheR-2 TRUE 0.989 11.000 0.838 1.000 Y NA
 3060746 3060747 VC274080_2224 VC274080_2223 cheR-2 flgB FALSE 0.240 220.000 0.309 1.000 Y NA
 3060747 3060748 VC274080_2223 VC274080_2222 flgB flgC TRUE 0.993 5.000 0.889 1.000 Y NA
 3060748 3060749 VC274080_2222 VC274080_2221 flgC flgD TRUE 0.964 18.000 0.478 NA Y NA
 3060749 3060750 VC274080_2221 VC274080_2220 flgD flgE TRUE 0.958 29.000 0.875 NA Y NA
 3060750 3060751 VC274080_2220 VC274080_2219 flgE flgF TRUE 0.789 183.000 0.594 0.006 Y NA
 3060751 3060752 VC274080_2219 VC274080_2218 flgF flgG TRUE 0.988 20.000 0.446 0.003 Y NA
 3060752 3060753 VC274080_2218 VC274080_2217 flgG flgH TRUE 0.995 15.000 0.909 0.006 Y NA
 3060753 3060754 VC274080_2217 VC274080_2216 flgH flgI TRUE 0.936 91.000 0.457 0.009 Y NA
 3060754 3060755 VC274080_2216 VC274080_2215 flgI flgJ TRUE 0.994 11.000 0.405 0.009 Y NA
 3060755 3060756 VC274080_2215 VC274080_2214 flgJ flgK TRUE 0.849 180.000 0.705 0.002 Y NA
 3060756 3060757 VC274080_2214 VC274080_2213 flgK flgL TRUE 0.978 13.000 0.182 0.001   NA
 3060757 3060758 VC274080_2213 VC274080_2212 flgL   TRUE 0.726 60.000 0.000 0.006   NA
 3060758 3060759 VC274080_2212 VC274080_2211     FALSE 0.223 80.000 0.094 NA   NA
 3060759 3060760 VC274080_2211 VC274080_2210   flaA FALSE 0.561 149.000 0.600 NA   NA
 3060760 3060761 VC274080_2210 VC274080_2208 flaA flaC FALSE 0.062 555.000 0.000 0.002 Y NA
 3060762 3060763 VC274080_2209 VC274080_2207     FALSE 0.087 161.000 0.000 NA   NA
 3060763 3060764 VC274080_2207 VC274080_2206     FALSE 0.320 42.000 0.000 NA   NA
 3060764 3060765 VC274080_2206 VC274080_2205     FALSE 0.342 39.000 0.000 NA   NA
 3060765 3060766 VC274080_2205 VC274080_2204     FALSE 0.306 44.000 0.000 NA   NA
 3060766 3060767 VC274080_2204 VC274080_2203     TRUE 0.597 18.000 0.000 NA   NA
 3060767 3060768 VC274080_2203 VC274080_2202     FALSE 0.512 23.000 0.000 NA   NA
 3060768 3060769 VC274080_2202 VC274080_2192     TRUE 0.696 -60.000 0.000 NA   NA
 3060769 3060771 VC274080_2192 VC274080_2201     FALSE 0.320 42.000 0.000 NA   NA
 3060771 3060772 VC274080_2201 VC274080_2200     FALSE 0.320 42.000 0.000 NA   NA
 3060772 3060773 VC274080_2200 VC274080_2199     FALSE 0.447 27.000 0.000 NA   NA
 3060773 3060774 VC274080_2199 VC274080_2198     FALSE 0.320 42.000 0.000 NA   NA
 3060774 3060775 VC274080_2198 VC274080_2197     TRUE 0.597 18.000 0.000 NA   NA
 3060775 3060776 VC274080_2197 VC274080_2196     FALSE 0.496 24.000 0.000 NA   NA
 3060776 3060777 VC274080_2196 VC274080_2195     FALSE 0.212 78.000 0.000 NA   NA
 3060777 3060778 VC274080_2195 VC274080_2194     FALSE 0.436 28.000 0.000 NA   NA
 3060778 3060779 VC274080_2194 VC274080_2193     FALSE 0.478 25.000 0.000 NA   NA
 3060780 3060781 VC274080_0420 VC274080_0419     FALSE 0.528 162.000 0.000 0.001   NA
 3060781 3060782 VC274080_0419 VC274080_0418   prmA FALSE 0.061 209.000 0.152 1.000   NA
 3060782 3060783 VC274080_0418 VC274080_0417 prmA   FALSE 0.451 113.000 0.042 1.000 Y NA
 3060783 3060784 VC274080_0417 VC274080_0416   fis TRUE 0.590 24.000 0.161 1.000 N NA
 3060784 3060785 VC274080_0416 VC274080_0415 fis gntR TRUE 0.641 138.000 0.027 0.054 Y NA
 3060786 3060787 VC274080_0414 VC274080_0413 edd gntV TRUE 0.943 -3.000 0.066 1.000 Y NA
 3060788 3060789 VC274080_0412 VC274080_0411   eda TRUE 0.951 13.000 0.192 1.000 Y NA
 3060789 3060790 VC274080_0411 VC274080_0410 eda   FALSE 0.008 223.000 0.000 1.000 N NA
 3060790 3060791 VC274080_0410 VC274080_0409     TRUE 0.871 21.000 0.333 NA   NA
 3060791 3060792 VC274080_0409 VC274080_0408     FALSE 0.020 235.000 0.000 NA   NA
 3060793 3060794 VC274080_0407 VC274080_0406 cadA   TRUE 0.718 44.000 0.125 1.000 Y NA
 3060794 3060795 VC274080_0406 VC274080_0405     FALSE 0.282 149.000 0.188 NA   NA
 3060795 3060796 VC274080_0405 VC274080_0404     TRUE 0.756 11.000 0.000 NA   NA
 3060796 3060797 VC274080_0404 VC274080_0403     FALSE 0.009 299.000 0.000 NA   NA
 3060797 3060798 VC274080_0403 VC274080_0402     FALSE 0.514 161.000 0.065 0.083 Y NA
 3060799 3060800 VC274080_0401 VC274080_0400   purH FALSE 0.107 76.000 0.004 NA   NA
 3060800 3060801 VC274080_0400 VC274080_0399 purH purD TRUE 0.769 59.000 0.238 1.000 Y NA
 3060802 3060803 VC274080_0398 VC274080_0397   hupA TRUE 0.827 1.000 0.087 NA   NA
 3060805 3060806 VC274080_0395 VC274080_0394   manA-1 TRUE 0.896 -34.000 0.214 1.000   NA
 3060806 3060807 VC274080_0394 VC274080_0393 manA-1   FALSE 0.003 494.000 0.000 1.000   NA
 3060808 3060809 VC274080_0392 VC274080_0391     FALSE 0.195 0.000 0.050 NA N NA
 3060809 3060810 VC274080_0391 VC274080_0390     FALSE 0.018 55.000 0.023 NA N NA
 3060811 3060812 VC274080_0389 VC274080_0388     FALSE 0.336 40.000 0.000 NA   NA
 3060812 3060813 VC274080_0388 VC274080_0387     TRUE 0.761 -13.000 0.000 NA   NA
 3060813 3060814 VC274080_0387 VC274080_0386   galE-1 TRUE 0.981 8.000 0.297 1.000 Y NA
 3060815 3060816 VC274080_0385 VC274080_0384   rfbU FALSE 0.241 61.000 0.000 NA   NA
 3060816 3060817 VC274080_0384 VC274080_0383 rfbU rfbV TRUE 0.986 8.000 0.091 0.013 Y NA
 3060818 3060819 VC274080_0382 VC274080_0381     FALSE 0.003 550.000 0.000 NA   NA
 3060819 3060820 VC274080_0381 VC274080_0380     TRUE 0.811 7.000 0.000 NA   NA
 3060820 3060821 VC274080_0380 VC274080_0379     FALSE 0.093 158.000 0.000 NA   NA
 3060821 3060822 VC274080_0379 VC274080_0378     FALSE 0.045 150.000 0.037 1.000   NA
 3060822 3060823 VC274080_0378 VC274080_0377     FALSE 0.090 70.000 0.035 1.000   NA
 3060823 3060824 VC274080_0377 VC274080_0376     FALSE 0.554 -9.000 0.035 1.000   NA
 3060824 3060825 VC274080_0376 VC274080_0375   rfbL TRUE 0.919 9.000 0.041 0.058 N NA
 3060825 3060826 VC274080_0375 VC274080_0374 rfbL   TRUE 0.965 6.000 0.375 1.000   NA
 3060826 3060827 VC274080_0374 VC274080_0373   rfbI TRUE 0.843 39.000 0.667 1.000   NA
 3060827 3060828 VC274080_0373 VC274080_0372 rfbI rfbH TRUE 0.911 -61.000 0.000 NA Y NA
 3060828 3060829 VC274080_0372 VC274080_0371 rfbH rfbG TRUE 0.924 -28.000 0.000 NA Y NA
 3060829 3060830 VC274080_0371 VC274080_0370 rfbG rfbE TRUE 0.963 -3.000 0.130 1.000 Y NA
 3060830 3060831 VC274080_0370 VC274080_0369 rfbE gmd TRUE 0.949 11.000 0.130 1.000 Y NA
 3060831 3060832 VC274080_0369 VC274080_0368 gmd rfbB TRUE 0.910 3.000 0.200 1.000 N NA
 3060832 3060833 VC274080_0368 VC274080_0367 rfbB rfbA TRUE 0.937 3.000 0.267 1.000 N NA
 3060834 3060835 VC274080_0366 VC274080_0365 rfaD   FALSE 0.565 159.000 0.022 0.018 Y NA
 3060835 3060836 VC274080_0365 VC274080_0364     TRUE 0.623 8.000 0.041 1.000   NA
 3060836 3060837 VC274080_0364 VC274080_0363     TRUE 0.682 2.000 0.039 NA   NA
 3060837 3060838 VC274080_0363 VC274080_0362   rfaF TRUE 0.934 -3.000 0.029 NA Y NA
 3060838 3060839 VC274080_0362 VC274080_0361 rfaF   TRUE 0.932 -3.000 0.017 1.000 Y NA
 3060839 3060840 VC274080_0361 VC274080_0360     TRUE 0.948 -3.000 0.080 NA Y NA
 3060840 3060841 VC274080_0360 VC274080_0359   kdtA TRUE 0.890 -39.000 0.024 NA Y NA
 3060841 3060842 VC274080_0359 VC274080_0358 kdtA   TRUE 0.620 -3.000 0.020 NA   NA
 3060842 3060843 VC274080_0358 VC274080_0357     TRUE 0.981 3.000 0.667 NA   NA
 3060843 3060844 VC274080_0357 VC274080_0356     TRUE 0.967 -3.000 0.400 NA   NA
 3060844 3060845 VC274080_0356 VC274080_0355     TRUE 0.963 -3.000 0.350 NA   NA
 3060846 3060847 VC274080_0354 VC274080_0353     TRUE 0.635 4.000 0.019 NA   NA
 3060848 3060849 VC274080_0352 VC274080_0351     TRUE 0.627 43.000 0.058 NA Y NA
 3060852 3060853 VC274080_0348 VC274080_0347 mutM   FALSE 0.571 10.000 0.022 NA   NA
 3060853 3060854 VC274080_0347 VC274080_0346   rpmG FALSE 0.011 221.000 0.004 NA   NA
 3060854 3060855 VC274080_0346 VC274080_0345 rpmG rpmB TRUE 0.915 97.000 0.332 0.013 Y NA
 3060856 3060857 VC274080_A0894 VC274080_A0895     FALSE 0.009 301.000 0.000 NA   NA
 3060857 3060858 VC274080_A0895 VC274080_A0896     TRUE 0.789 160.000 0.317 0.027 Y NA
 3060858 3060859 VC274080_A0896 VC274080_A0897     TRUE 0.960 1.000 0.293 NA   NA
 3060859 3060860 VC274080_A0897 VC274080_A0898     TRUE 0.976 5.000 0.579 NA   NA
 3060860 3060861 VC274080_A0898 VC274080_A0899     TRUE 0.973 11.000 0.737 NA   NA
 3060861 3060862 VC274080_A0899 VC274080_A0900     TRUE 0.971 -12.000 0.824 NA N NA
 3060862 3060863 VC274080_A0900 VC274080_A0901     TRUE 0.982 9.000 0.882 NA   NA
 3060864 3060865 VC274080_A0902 VC274080_A0903     TRUE 0.987 1.000 1.000 NA   NA
 3060867 3060868 VC274080_A0905 VC274080_A0906 malS   FALSE 0.581 -58.000 0.057 NA   NA
 3060870 3060871 VC274080_A0908 VC274080_A0909 fadL-3   TRUE 0.780 16.000 0.146 NA   NA
 3060871 3060872 VC274080_A0909 VC274080_A0910     FALSE 0.005 361.000 0.000 NA   NA
 3060873 3060874 VC274080_A0911 VC274080_A0912 hap   FALSE 0.004 421.000 0.000 1.000   NA
 3060874 3060875 VC274080_A0912 VC274080_A0913   ompW TRUE 0.774 38.000 0.034 0.006   NA
 3060876 3060877 VC274080_A0914 VC274080_A0915   pbpG FALSE 0.003 531.000 0.000 NA   NA
 3060877 3060878 VC274080_A0915 VC274080_A0916 pbpG   FALSE 0.007 235.000 0.000 1.000 N NA
 3060878 3060879 VC274080_A0916 VC274080_A0917   cydA-2 FALSE 0.499 129.000 0.400 1.000 N NA
 3060879 3060880 VC274080_A0917 VC274080_A0918 cydA-2 cydB-2 TRUE 0.991 13.000 0.500 0.043 Y NA
 3060880 3060881 VC274080_A0918 VC274080_A0919 cydB-2   FALSE 0.017 243.000 0.000 NA   NA
 3060881 3060882 VC274080_A0919 VC274080_A0920     FALSE 0.004 397.000 0.000 NA   NA
 3060884 3060885 VC274080_A0922 VC274080_A0923 dsdC   FALSE 0.003 300.000 0.000 1.000 N NA
 3060885 3060886 VC274080_A0923 VC274080_A0924     FALSE 0.581 108.000 0.333 1.000   NA
 3060886 3060887 VC274080_A0924 VC274080_A0925     FALSE 0.003 629.000 0.000 NA   NA
 3060887 3060888 VC274080_A0925 VC274080_A0926     TRUE 0.906 25.000 0.667 NA   NA
 3060888 3060889 VC274080_A0926 VC274080_A0927     TRUE 0.966 12.000 0.667 NA   NA
 3060889 3060890 VC274080_A0927 VC274080_A0928     TRUE 0.967 13.000 0.800 NA   NA
 3060890 3060891 VC274080_A0928 VC274080_A0929     TRUE 0.852 51.000 1.000 NA   NA
 3060891 3060892 VC274080_A0929 VC274080_A0931     FALSE 0.002 982.000 0.000 NA   NA
 3060893 3060894 VC274080_A0930 VC274080_A0932 tdh kbl TRUE 0.969 3.000 0.547 1.000 N NA
 3060895 3060896 VC274080_A0933 VC274080_A0934     FALSE 0.007 147.000 0.016 1.000 N NA
 3060896 3060897 VC274080_A0934 VC274080_A0935     FALSE 0.161 -6.000 0.058 1.000 N NA
 3060898 3060899 VC274080_A0936 VC274080_A0937     FALSE 0.542 112.000 0.286 NA   NA
 3060899 3060900 VC274080_A0937 VC274080_A0938     FALSE 0.322 106.000 0.132 NA   NA
 3060900 3060901 VC274080_A0938 VC274080_A0939     TRUE 0.868 -49.000 0.245 1.000 N NA
 3060902 3060903 VC274080_A0940 VC274080_A0941   zwf FALSE 0.002 344.000 0.000 1.000 N NA
 3060903 3060904 VC274080_A0941 VC274080_A0942 zwf pgl TRUE 0.973 -3.000 0.188 1.000 Y NA
 3060904 3060905 VC274080_A0942 VC274080_A0943 pgl gnd TRUE 0.975 14.000 0.039 0.002 Y NA
 3060905 3060906 VC274080_A0943 VC274080_A0944 gnd   FALSE 0.042 156.000 0.009 NA   NA
 3060906 3060907 VC274080_A0944 VC274080_A0945     FALSE 0.012 268.000 0.000 NA   NA
 3060907 3060908 VC274080_A0945 VC274080_A0946     TRUE 0.903 -6.000 0.169 1.000   NA
 3060909 3060910 VC274080_A0947 VC274080_A0948     FALSE 0.105 136.000 0.063 NA   NA
 3060910 3060911 VC274080_A0948 VC274080_A0949     TRUE 0.876 19.000 0.109 1.000 Y NA
 3060911 3060912 VC274080_A0949 VC274080_A0950     FALSE 0.075 159.000 0.120 1.000 N NA
 3060912 3060913 VC274080_A0950 VC274080_A0951     FALSE 0.341 141.000 0.040 1.000 Y NA
 3060913 3060914 VC274080_A0951 VC274080_A0952   hutZ FALSE 0.003 307.000 0.000 1.000 N NA
 3060914 3060915 VC274080_A0952 VC274080_A0953 hutZ hutX TRUE 0.931 25.000 0.355 NA Y NA
 3060915 3060916 VC274080_A0953 VC274080_A0954 hutX hutW TRUE 0.688 24.000 0.203 NA N NA
 3060917 3060918 VC274080_A0955 VC274080_A0956 tonB1 exbB1 TRUE 0.990 0.000 0.473 0.013 N NA
 3060918 3060919 VC274080_A0956 VC274080_A0957 exbB1 exbD1 TRUE 0.995 -3.000 0.551 0.066 Y NA
 3060920 3060921 VC274080_A0494 VC274080_A0495     TRUE 0.636 135.000 0.600 NA   NA
 3060921 3060922 VC274080_A0495 VC274080_A0496     FALSE 0.241 61.000 0.000 NA   NA
 3060922 3060923 VC274080_A0496 VC274080_A0497   blc-4 TRUE 0.683 -88.000 0.000 NA   NA
 3060924 3060925 VC274080_A0498 VC274080_A0499     TRUE 0.961 -10.000 0.160 NA Y NA
 3060926 3060927 VC274080_A0500 VC274080_A0501     FALSE 0.527 76.000 0.250 NA   NA
 3060927 3060928 VC274080_A0501 VC274080_A0502     TRUE 0.635 73.000 0.375 NA   NA
 3060928 3060929 VC274080_A0502 VC274080_A0503     FALSE 0.230 65.000 0.000 NA   NA
 3060929 3060930 VC274080_A0503 VC274080_A0504     FALSE 0.030 208.000 0.000 NA   NA
 3060930 3060931 VC274080_A0504 VC274080_A0505     FALSE 0.002 819.000 0.000 NA   NA
 3060931 3060932 VC274080_A0505 VC274080_A0506     TRUE 0.619 156.000 1.000 NA   NA
 3060933 3060934 VC274080_A0507 VC274080_A0508   sbp FALSE 0.005 383.000 0.000 NA   NA
 3060935 3060936 VC274080_A0509 VC274080_A0510     FALSE 0.008 304.000 0.000 NA   NA
 3060936 3060937 VC274080_A0510 VC274080_A0511     FALSE 0.007 323.000 0.000 NA   NA
 3060937 3060938 VC274080_A0511 VC274080_A0512     TRUE 0.631 147.000 0.750 NA   NA
 3060938 3060939 VC274080_A0512 VC274080_A0513     FALSE 0.371 147.000 0.250 NA   NA
 3060939 3060940 VC274080_A0513 VC274080_A0514     TRUE 0.942 9.000 0.250 NA   NA
 3060940 3060941 VC274080_A0514 VC274080_A0515     TRUE 0.978 -18.000 1.000 NA   NA
 3060941 3060942 VC274080_A0515 VC274080_A0516     TRUE 0.701 131.000 0.750 NA   NA
 3060942 3060943 VC274080_A0516 VC274080_A0517     TRUE 0.916 25.000 0.750 NA   NA
 3060943 3060944 VC274080_A0517 VC274080_A0518     FALSE 0.002 1315.000 0.000 NA   NA
 3060944 3060945 VC274080_A0518 VC274080_A0519     FALSE 0.097 67.000 0.021 NA   NA
 3060945 3060946 VC274080_A0519 VC274080_A0520     TRUE 0.693 144.000 1.000 NA   NA
 3060946 3060947 VC274080_A0520 VC274080_A0521     FALSE 0.003 567.000 0.000 NA   NA
 3060947 3060948 VC274080_A0521 VC274080_A0522     FALSE 0.003 517.000 0.000 NA   NA
 3060948 3060949 VC274080_A0522 VC274080_A0523     TRUE 0.959 -13.000 0.600 NA N NA
 3060949 3060950 VC274080_A0523 VC274080_A0524     FALSE 0.053 137.000 0.020 1.000   NA
 3060950 3060951 VC274080_A0524 VC274080_A0525     FALSE 0.029 168.000 0.020 NA   NA
 3060953 3060954 VC274080_A0527 VC274080_A0528     FALSE 0.028 171.000 0.003 1.000   NA
 3060954 3060955 VC274080_A0528 VC274080_A0529   doc TRUE 0.614 0.000 0.013 1.000   NA
 3060955 3060956 VC274080_A0529 VC274080_A0530 doc   FALSE 0.015 188.000 0.013 1.000   NA
 3060956 3060957 VC274080_A0530 VC274080_A0531     FALSE 0.002 193.000 0.033 NA N NA
 3060957 3060958 VC274080_A0531 VC274080_A0532     TRUE 0.963 -13.000 0.185 NA Y NA
 3060958 3060959 VC274080_A0532 VC274080_A0533     FALSE 0.073 128.000 0.039 1.000   NA
 3060959 3060960 VC274080_A0533 VC274080_A0534     FALSE 0.007 322.000 0.000 NA   NA
 3060961 3060962 VC274080_A0535 VC274080_A0536     TRUE 0.803 -3.000 0.000 1.000   NA
 3060963 3060964 VC274080_A0537 VC274080_A0538     FALSE 0.107 152.000 0.000 NA   NA
 3060964 3060965 VC274080_A0538 VC274080_A0539     FALSE 0.137 141.000 0.000 NA   NA
 3060965 3060966 VC274080_A0539 VC274080_A0540     FALSE 0.224 67.000 0.000 NA   NA
 3060966 3060967 VC274080_A0540 VC274080_A0541     TRUE 0.803 -3.000 0.000 1.000   NA
 3060967 3060968 VC274080_A0541 VC274080_A0542     FALSE 0.033 202.000 0.000 NA   NA
 3060968 3060969 VC274080_A0542 VC274080_A0543     TRUE 0.765 -12.000 0.000 NA   NA
 3060969 3060970 VC274080_A0543 VC274080_A0544     TRUE 0.719 79.000 0.600 NA   NA
 3060970 3060971 VC274080_A0544 VC274080_A0545     FALSE 0.250 58.000 0.000 NA   NA
 3060971 3060972 VC274080_A0545 VC274080_A0546     TRUE 0.692 69.000 0.500 NA   NA
 3060972 3060973 VC274080_A0546 VC274080_A0547     FALSE 0.047 186.000 0.000 NA   NA
 3060973 3060974 VC274080_A0547 VC274080_A0548     TRUE 0.793 -6.000 0.000 NA   NA
 3060974 3060975 VC274080_A0548 VC274080_A0549     FALSE 0.241 61.000 0.000 NA   NA
 3060975 3060976 VC274080_A0549 VC274080_A0550     FALSE 0.003 465.000 0.000 NA   NA
 3060976 3060977 VC274080_A0550 VC274080_A0551     TRUE 0.805 57.000 0.750 NA   NA
 3060979 3060980 VC274080_A0553 VC274080_A0554     FALSE 0.003 184.000 0.033 1.000 N NA
 3060980 3060981 VC274080_A0554 VC274080_A0555   orfA FALSE 0.001 519.000 0.000 1.000 N NA
 3060981 3060982 VC274080_A0555 VC274080_A0556 orfA orfB TRUE 0.984 -3.000 0.000 0.047 Y NA
 3060984 3060985 VC274080_A0558 VC274080_A0559   nrdD FALSE 0.003 463.000 0.000 1.000   NA
 3060985 3060986 VC274080_A0559 VC274080_A0560 nrdD nrdG TRUE 0.962 5.000 0.464 1.000 N NA
 3060986 3060987 VC274080_A0560 VC274080_A0561 nrdG   FALSE 0.011 122.000 0.054 1.000 N NA
 3060987 3060988 VC274080_A0561 VC274080_A0562     FALSE 0.529 58.000 0.288 1.000 N NA
 3060989 3060990 VC274080_A0563 VC274080_A0564   fruA-2 FALSE 0.169 38.000 0.025 NA   NA
 3060990 3060991 VC274080_A0564 VC274080_A0565 fruA-2 fruK TRUE 0.979 13.000 0.562 1.000 Y NA
 3060991 3060992 VC274080_A0565 VC274080_A0566 fruK fruB TRUE 0.949 11.000 0.130 1.000 Y NA
 3060993 3060994 VC274080_A0567 VC274080_A0568 fruR   FALSE 0.018 54.000 0.012 1.000 N NA
 3060994 3060995 VC274080_A0568 VC274080_A0569     TRUE 0.998 2.000 0.669 0.001 Y NA
 3060995 3060996 VC274080_A0569 VC274080_A0570   luxN FALSE 0.012 97.000 0.014 1.000 N NA
 3060997 3060998 VC274080_A0571 VC274080_A0572     FALSE 0.088 197.000 0.222 1.000 N NA
 3060998 3060999 VC274080_A0572 VC274080_A0573     FALSE 0.376 147.000 0.085 1.000 Y NA
 3061004 3061005 VC274080_A0578 VC274080_A0579     TRUE 0.967 -10.000 0.571 1.000   NA
 3061007 3061008 VC274080_1400 VC274080_1399     FALSE 0.007 321.000 0.000 NA   NA
 3061008 3061009 VC274080_1399 VC274080_1398   mglC FALSE 0.004 410.000 0.000 1.000   NA
 3061009 3061010 VC274080_1398 VC274080_1397 mglC mglA TRUE 0.998 5.000 0.905 0.002 Y NA
 3061013 3061014 VC274080_1394 VC274080_1393     TRUE 0.937 -21.000 0.314 NA   NA
 3061016 3061017 VC274080_1391 VC274080_1390     TRUE 0.877 26.000 0.189 1.000 Y NA
 3061017 3061018 VC274080_1390 VC274080_1389   ompV FALSE 0.011 213.000 0.000 NA N NA
 3061018 3061019 VC274080_1389 VC274080_1388 ompV   TRUE 0.585 98.000 0.333 NA   NA
 3061020 3061021 VC274080_1387 VC274080_1386     TRUE 0.985 -31.000 0.688 1.000 Y NA
 3061021 3061022 VC274080_1386 VC274080_1385     TRUE 0.952 10.000 0.464 1.000 N NA
 3061023 3061024 VC274080_1384 VC274080_1383     TRUE 0.814 49.000 0.909 1.000 N NA
 3061024 3061025 VC274080_1383 VC274080_1382     TRUE 0.595 121.000 0.385 NA   NA
 3061026 3061027 VC274080_1381 VC274080_1380   rimJ FALSE 0.138 95.000 0.061 NA   NA
 3061027 3061028 VC274080_1380 VC274080_1379 rimJ tyrR TRUE 0.803 0.000 0.122 1.000 N NA
 3061028 3061029 VC274080_1379 VC274080_1378 tyrR   FALSE 0.324 114.000 0.137 NA   NA
 3061029 3061030 VC274080_1378 VC274080_1377     TRUE 0.796 63.000 0.791 NA   NA
 3061030 3061031 VC274080_1377 VC274080_1376     FALSE 0.009 225.000 0.026 NA   NA
 3061031 3061032 VC274080_1376 VC274080_1375     FALSE 0.049 149.000 0.027 NA   NA
 3061033 3061034 VC274080_1374 VC274080_1373 pabB   FALSE 0.058 197.000 0.169 1.000 N NA
 3061034 3061035 VC274080_1373 VC274080_1372   sdaC-1 FALSE 0.000 299.000 0.049 1.000 N NA
 3061035 3061036 VC274080_1372 VC274080_1371 sdaC-1 sdaA-1 TRUE 0.835 93.000 0.567 1.000 Y NA
 3061038 3061039 VC274080_1369 VC274080_1368   asnS FALSE 0.012 102.000 0.021 1.000 N NA
 3061041 3061042 VC274080_1366 VC274080_1365     TRUE 0.922 -28.000 0.267 NA   NA
 3061042 3061043 VC274080_1365 VC274080_1364   aspC FALSE 0.046 161.000 0.048 NA   NA
 3061043 3061044 VC274080_1364 VC274080_1363 aspC   FALSE 0.004 281.000 0.000 1.000 N NA
 3061044 3061045 VC274080_1363 VC274080_1362     TRUE 0.929 -3.000 0.261 1.000 N NA
 3061047 3061048 VC274080_1360 VC274080_1359 mdoG mdoH FALSE 0.438 19.000 0.102 NA N NA
 3061049 3061050 VC274080_1358 VC274080_1357     TRUE 0.701 101.000 0.600 1.000   NA
 3061050 3061051 VC274080_1357 VC274080_1356   celF TRUE 0.979 23.000 1.000 0.018   NA
 3061051 3061052 VC274080_1356 VC274080_1355 celF celC TRUE 0.988 -18.000 0.800 1.000 Y NA
 3061052 3061053 VC274080_1355 VC274080_1354 celC celB TRUE 0.954 47.000 0.364 0.008 Y NA
 3061053 3061054 VC274080_1354 VC274080_1353 celB celA TRUE 0.932 79.000 0.364 0.008 Y NA
 3061058 3061059 VC274080_1349 VC274080_1348     TRUE 0.990 -19.000 0.263 0.026 Y NA
 3061059 3061060 VC274080_1348 VC274080_1347     TRUE 0.765 107.000 0.354 0.069 N NA
 3061060 3061061 VC274080_1347 VC274080_1346     TRUE 0.990 10.000 0.827 1.000 Y NA
 3061061 3061062 VC274080_1346 VC274080_1345     TRUE 0.633 102.000 0.154 1.000 Y NA
 3061062 3061063 VC274080_1345 VC274080_1344     FALSE 0.002 741.000 0.000 NA   NA
 3061064 3061065 VC274080_2814 VC274080_2813 add   FALSE 0.328 92.000 0.189 1.000 N NA
 3061065 3061066 VC274080_2813 VC274080_2812   ntrC TRUE 0.622 41.000 0.046 1.000 Y NA
 3061066 3061067 VC274080_2812 VC274080_B0046 ntrC   TRUE 0.678 -1043.000 0.000 NA   NA
 3061067 3061068 VC274080_B0046 VC274080_2811   ntrB FALSE 0.262 56.000 0.000 NA   NA
 3061068 3061069 VC274080_2811 VC274080_2810 ntrB   FALSE 0.360 133.000 0.188 NA   NA
 3061069 3061070 VC274080_2810 VC274080_2809   glnA FALSE 0.027 178.000 0.044 NA   NA
 3061070 3061071 VC274080_2809 VC274080_2808 glnA   FALSE 0.062 143.000 0.007 NA   NA
 3061072 3061073 VC274080_2807 VC274080_2806 typA   FALSE 0.080 83.000 0.013 1.000   NA
 3061073 3061074 VC274080_2806 VC274080_2805   yihY FALSE 0.205 27.000 0.020 1.000   NA
 3061074 3061075 VC274080_2805 VC274080_2804 yihY   FALSE 0.499 18.000 0.069 1.000   NA
 3061075 3061076 VC274080_2804 VC274080_2803     FALSE 0.152 67.000 0.065 1.000   NA
 3061077 3061078 VC274080_2802 VC274080_2801   pckA FALSE 0.018 187.000 0.027 NA   NA
 3061078 3061079 VC274080_2801 VC274080_2800 pckA   FALSE 0.000 337.000 0.048 1.000 N NA
 3061079 3061080 VC274080_2800 VC274080_2799     TRUE 0.609 19.000 0.140 1.000 N NA
 3061081 3061082 VC274080_2798 VC274080_2797 epsC gspD TRUE 0.968 46.000 0.575 0.005 Y NA
 3061082 3061083 VC274080_2797 VC274080_2796 gspD epsE TRUE 0.998 6.000 0.776 0.005 Y NA
 3061083 3061084 VC274080_2796 VC274080_2795 epsE epsF TRUE 0.997 0.000 0.653 0.005 Y NA
 3061084 3061085 VC274080_2795 VC274080_2794 epsF epsG TRUE 0.973 41.000 0.599 0.005 Y NA
 3061085 3061086 VC274080_2794 VC274080_2793 epsG epsH TRUE 0.925 34.000 0.087 0.005 Y NA
 3061086 3061087 VC274080_2793 VC274080_2792 epsH epsI TRUE 0.974 -10.000 0.132 0.005   NA
 3061087 3061088 VC274080_2792 VC274080_2791 epsI epsJ TRUE 0.991 -13.000 0.569 0.005   NA
 3061088 3061089 VC274080_2791 VC274080_2790 epsJ epsK TRUE 0.983 -10.000 0.461 1.000 Y NA
 3061089 3061090 VC274080_2790 VC274080_2789 epsK epsL TRUE 0.992 -31.000 0.537 0.069 Y NA
 3061090 3061091 VC274080_2789 VC274080_2788 epsL epsM TRUE 0.992 7.000 0.811 1.000 Y NA
 3061091 3061092 VC274080_2788 VC274080_2787 epsM epsN TRUE 0.980 2.000 0.649 1.000   NA
 3061093 3061094 VC274080_2786 VC274080_2785 cysQ   TRUE 0.915 -55.000 0.373 1.000 N NA
 3061094 3061095 VC274080_2785 VC274080_2784     FALSE 0.132 73.000 0.059 1.000   NA
 3061095 3061096 VC274080_2784 VC274080_2783     FALSE 0.145 88.000 0.066 1.000   NA
 3061097 3061098 VC274080_2782 VC274080_2781   bioH FALSE 0.227 66.000 0.000 NA   NA
 3061098 3061099 VC274080_2781 VC274080_2780 bioH   FALSE 0.091 136.000 0.053 NA   NA
 3061101 3061102 VC274080_2778 VC274080_2777 greB ompR TRUE 0.681 138.000 0.067 0.047 Y NA
 3061102 3061103 VC274080_2777 VC274080_2776 ompR envZ TRUE 0.853 69.000 0.584 1.000 Y NA
 3061104 3061105 VC274080_2775 VC274080_2774   recG FALSE 0.000 309.000 0.009 1.000 N NA
 3061105 3061106 VC274080_2774 VC274080_2773 recG spoT FALSE 0.424 119.000 0.034 1.000 Y NA
 3061106 3061107 VC274080_2773 VC274080_2772 spoT rpoZ TRUE 0.889 32.000 0.291 1.000 Y NA
 3061107 3061108 VC274080_2772 VC274080_2771 rpoZ gmk TRUE 0.590 108.000 0.471 1.000 N NA
 3061110 3061111 VC274080_2769 VC274080_2768     TRUE 0.978 11.000 0.916 NA   NA
 3061113 3061114 VC274080_2766 VC274080_2765   dsbD FALSE 0.018 173.000 0.084 1.000 N NA
 3061114 3061115 VC274080_2765 VC274080_2764 dsbD pulA FALSE 0.042 160.000 0.048 1.000   NA
 3061115 3061116 VC274080_2764 VC274080_2763 pulA   TRUE 0.959 -3.000 0.042 0.018   NA
 3061116 3061117 VC274080_2763 VC274080_2762   dcuA FALSE 0.004 394.000 0.000 1.000   NA
 3061117 3061118 VC274080_2762 VC274080_2761 dcuA aspA FALSE 0.444 80.000 0.195 1.000   NA
 3061119 3061120 VC274080_2760 VC274080_2759   fsxA FALSE 0.087 92.000 0.017 NA   NA
 3061121 3061122 VC274080_2758 VC274080_2757   sodA FALSE 0.018 53.000 0.045 1.000 N NA
 3061122 3061123 VC274080_2757 VC274080_2756 sodA cpxA FALSE 0.284 82.000 0.162 1.000 N NA
 3061123 3061124 VC274080_2756 VC274080_2755 cpxA cpxR TRUE 0.993 0.000 0.791 1.000 Y NA
 3061125 3061126 VC274080_A0958 VC274080_A0959 hutB   TRUE 0.987 12.000 0.852 1.000 Y NA
 3061126 3061127 VC274080_A0959 VC274080_A0960   hutD TRUE 0.938 0.000 0.029 1.000 Y NA
 3061129 3061130 VC274080_A0962 VC274080_A0963     FALSE 0.033 203.000 0.000 NA   NA
 3061132 3061133 VC274080_A0965 VC274080_A0966     TRUE 0.712 63.000 0.500 NA   NA
 3061137 3061138 VC274080_A0970 VC274080_A0971     TRUE 0.951 -3.000 0.273 NA   NA
 3061139 3061140 VC274080_A0972 VC274080_A0973     FALSE 0.031 165.000 0.025 NA   NA
 3061140 3061141 VC274080_A0973 VC274080_A0974     FALSE 0.285 23.000 0.025 NA   NA
 3061142 3061143 VC274080_A0975 VC274080_A0976     FALSE 0.003 565.000 0.000 NA   NA
 3061143 3061144 VC274080_A0976 VC274080_A0978     FALSE 0.028 212.000 0.000 NA   NA
 3061146 3061147 VC274080_A0979 VC274080_A0980     TRUE 0.657 119.000 0.667 NA N NA
 3061147 3061148 VC274080_A0980 VC274080_A0981     FALSE 0.251 152.000 0.048 0.080 N NA
 3061148 3061149 VC274080_A0981 VC274080_A0982     FALSE 0.004 164.000 0.038 NA N NA
 3061149 3061150 VC274080_A0982 VC274080_A0983     FALSE 0.092 84.000 0.025 NA   NA
 3061151 3061152 VC274080_A0984 VC274080_A0985 malG malF TRUE 0.995 12.000 0.814 0.051 Y NA
 3061152 3061153 VC274080_A0985 VC274080_A0986 malF malE TRUE 0.598 75.000 0.120 1.000 Y NA
 3061154 3061155 VC274080_A0987 VC274080_A0988   malK FALSE 0.003 517.000 0.000 NA   NA
 3061155 3061156 VC274080_A0988 VC274080_A0989 malK speG FALSE 0.008 222.000 0.000 1.000 N NA
 3061156 3061157 VC274080_A0989 VC274080_A0990 speG   FALSE 0.184 5.000 0.041 NA N NA
 3061160 3061161 VC274080_A0993 VC274080_A0994   ppiC FALSE 0.002 577.000 0.000 1.000   NA
 3061167 3061168 VC274080_A1000 VC274080_A1001     FALSE 0.317 26.000 0.051 NA   NA
 3061169 3061170 VC274080_A1002 VC274080_A1003     FALSE 0.039 287.000 0.235 NA   NA
 3061172 3061173 VC274080_A1005 VC274080_A1006     FALSE 0.135 152.000 0.150 1.000 N NA
 3061182 3061183 VC274080_A1015 VC274080_A1016     FALSE 0.161 48.000 0.044 NA   NA
 3061184 3061185 VC274080_A1017 VC274080_A1018     TRUE 0.857 29.000 0.500 NA   NA
 3061186 3061187 VC274080_A1019 VC274080_A1020     TRUE 0.959 20.000 0.500 1.000 Y NA
 3061187 3061188 VC274080_A1020 VC274080_A1021     FALSE 0.010 794.000 0.000 1.000 Y NA
 3061188 3061189 VC274080_A1021 VC274080_A1022     FALSE 0.037 154.000 0.000 1.000 N NA
 3061189 3061190 VC274080_A1022 VC274080_A1023     FALSE 0.201 100.000 0.000 NA   NA
 3061191 3061192 VC274080_A1024 VC274080_A1025   lldD FALSE 0.528 123.000 0.109 1.000 Y NA
 3061193 3061194 VC274080_A0252 VC274080_A0251   vctP TRUE 0.689 53.000 0.356 1.000   NA
 3061194 3061195 VC274080_A0251 VC274080_A0250 vctP   FALSE 0.007 316.000 0.000 1.000   NA
 3061196 3061197 VC274080_A0249 VC274080_A0248   prtV FALSE 0.458 85.000 0.200 NA   NA
 3061198 3061199 VC274080_A0247 VC274080_A0246   hlyC TRUE 0.970 10.000 0.587 1.000   NA
 3061199 3061200 VC274080_A0246 VC274080_A0245 hlyC hylB FALSE 0.012 267.000 0.000 1.000   NA
 3061200 3061201 VC274080_A0245 VC274080_A0244 hylB hlyA FALSE 0.009 299.000 0.000 1.000   NA
 3061202 3061203 VC274080_A0243 VC274080_A0242     FALSE 0.003 605.000 0.000 NA   NA
 3061203 3061204 VC274080_A0242 VC274080_A0240     FALSE 0.344 121.000 0.214 1.000 N NA
 3061206 3061207 VC274080_A0239 VC274080_A0238   emrD-2 TRUE 0.878 1.000 0.114 NA   NA
 3061207 3061208 VC274080_A0238 VC274080_A0237 emrD-2   FALSE 0.016 395.000 0.000 0.068 N NA
 3061211 3061212 VC274080_A0234 VC274080_A0233     FALSE 0.001 240.000 0.005 1.000 N NA
 3061213 3061214 VC274080_A0232 VC274080_A0231 nadE   TRUE 0.600 9.000 0.013 NA   NA
 3061214 3061215 VC274080_A0231 VC274080_A0230   dcuB FALSE 0.107 111.000 0.044 NA   NA
 3061215 3061216 VC274080_A0230 VC274080_A0229 dcuB rhlE-2 FALSE 0.028 190.000 0.066 1.000   NA
 3061216 3061217 VC274080_A0229 VC274080_A0228 rhlE-2 tnpA FALSE 0.014 505.000 0.000 1.000 Y NA
 3061218 3061219 VC274080_A0227 VC274080_A0226     TRUE 0.846 -3.000 0.104 NA   NA
 3061219 3061220 VC274080_A0226 VC274080_A0225     TRUE 0.946 -7.000 0.292 NA   NA
 3061220 3061221 VC274080_A0225 VC274080_A0224     FALSE 0.441 124.000 0.222 NA   NA
 3061221 3061222 VC274080_A0224 VC274080_A0223   guaC FALSE 0.002 324.000 0.000 1.000 N NA
 3061222 3061223 VC274080_A0223 VC274080_A0222 guaC   FALSE 0.004 409.000 0.000 NA   NA
 3061224 3061225 VC274080_A0221 VC274080_A0220     TRUE 0.733 66.000 0.600 1.000   NA
 3061228 3061229 VC274080_A0218 VC274080_A0216     FALSE 0.151 38.000 0.013 1.000   NA
 3061229 3061230 VC274080_A0216 VC274080_A0215     TRUE 0.994 0.000 0.902 0.079   NA
 3061230 3061231 VC274080_A0215 VC274080_A0214     FALSE 0.254 87.000 0.105 NA   NA
 3061233 3061234 VC274080_A0212 VC274080_A0211     FALSE 0.004 388.000 0.000 NA   NA
 3061238 3061239 VC274080_A0208 VC274080_A0206   pepT FALSE 0.004 172.000 0.044 NA N NA
 3061243 3061244 VC274080_A0202 VC274080_A0201     TRUE 0.611 57.000 0.286 1.000   NA
 3061244 3061245 VC274080_A0201 VC274080_A0200     FALSE 0.554 35.000 0.143 NA   NA
 3061246 3061247 VC274080_A0199 VC274080_A0198     TRUE 0.974 4.000 0.500 NA   NA
 3061247 3061248 VC274080_A0198 VC274080_A0197     TRUE 0.981 -3.000 0.738 NA   NA
 3061248 3061249 VC274080_A0197 VC274080_A0196     TRUE 0.952 -13.000 0.370 NA   NA
 3061249 3061250 VC274080_A0196 VC274080_A0195     TRUE 0.813 2.000 0.082 NA   NA
 3061250 3061251 VC274080_A0195 VC274080_A0194     TRUE 0.887 -6.000 0.143 NA   NA
 3061251 3061252 VC274080_A0194 VC274080_A0193     FALSE 0.090 89.000 0.026 NA   NA
 3061253 3061254 VC274080_2189 VC274080_2188 hemK   TRUE 0.869 0.000 0.109 NA   NA
 3061254 3061255 VC274080_2188 VC274080_2187     TRUE 0.838 16.000 0.195 NA   NA
 3061255 3061256 VC274080_2187 VC274080_2186   kdsA FALSE 0.544 20.000 0.089 1.000   NA
 3061256 3061257 VC274080_2186 VC274080_2185 kdsA ushA FALSE 0.001 542.000 0.000 1.000 N NA
 3061257 3061258 VC274080_2185 VC274080_2184 ushA   TRUE 0.782 7.000 0.078 NA   NA
 3061258 3061259 VC274080_2184 VC274080_2183     FALSE 0.462 14.000 0.008 NA   NA
 3061262 3061263 VC274080_2180 VC274080_2179   wrbA TRUE 0.980 3.000 0.657 NA   NA
 3061263 3061264 VC274080_2179 VC274080_2178 wrbA arsC TRUE 0.984 -3.000 0.253 0.041   NA
 3061264 3061265 VC274080_2178 VC274080_2177 arsC   TRUE 0.812 23.000 0.259 1.000   NA
 3061266 3061267 VC274080_2176 VC274080_2175     TRUE 0.916 -7.000 0.190 NA   NA
 3061267 3061268 VC274080_2175 VC274080_2174     FALSE 0.017 191.000 0.029 NA   NA
 3061269 3061270 VC274080_2173 VC274080_2172 bcp   FALSE 0.487 15.000 0.102 1.000 N NA
 3061271 3061272 VC274080_2171 VC274080_2170 dapA nlpB TRUE 0.792 58.000 0.267 NA Y NA
 3061273 3061274 VC274080_2169 VC274080_2168     TRUE 0.938 -10.000 0.273 NA   NA
 3061274 3061275 VC274080_2168 VC274080_2167   dapE TRUE 0.974 3.000 0.163 0.028 N NA
 3061275 3061276 VC274080_2167 VC274080_2166 dapE   TRUE 0.705 31.000 0.292 1.000 N NA
 3061279 3061280 VC274080_2163 VC274080_2162     FALSE 0.540 66.000 0.241 NA   NA
 3061280 3061281 VC274080_2162 VC274080_2161   flaE FALSE 0.370 124.000 0.238 1.000 N NA
 3061281 3061282 VC274080_2161 VC274080_2160 flaE flaD FALSE 0.193 290.000 0.000 0.002 Y NA
 3061282 3061283 VC274080_2160 VC274080_2159 flaD flaB FALSE 0.313 236.000 0.000 0.002 Y NA
 3061283 3061284 VC274080_2159 VC274080_2158 flaB flaG FALSE 0.480 74.000 0.043 NA Y NA
 3061284 3061285 VC274080_2158 VC274080_2157 flaG fliD TRUE 0.802 22.000 0.053 NA Y NA
 3061285 3061286 VC274080_2157 VC274080_2156 fliD   TRUE 0.944 22.000 1.000 NA   NA
 3061286 3061287 VC274080_2156 VC274080_2155   fliS TRUE 0.963 11.000 0.533 NA   NA
 3061287 3061288 VC274080_2155 VC274080_2154 fliS flrA FALSE 0.001 232.000 0.022 1.000 N NA
 3061288 3061289 VC274080_2154 VC274080_2153 flrA flrB TRUE 0.902 112.000 0.377 0.079 Y NA
 3061289 3061290 VC274080_2153 VC274080_2152 flrB flrC TRUE 0.996 -3.000 0.679 0.079 Y NA
 3061290 3061291 VC274080_2152 VC274080_2151 flrC fliE TRUE 0.640 58.000 0.446 1.000 N NA
 3061291 3061292 VC274080_2151 VC274080_2150 fliE fliF TRUE 0.994 16.000 0.910 0.006 Y NA
 3061292 3061293 VC274080_2150 VC274080_2149 fliF fliG TRUE 0.971 23.000 0.189 0.006 Y NA
 3061293 3061294 VC274080_2149 VC274080_2148 fliG   TRUE 0.930 81.000 0.320 0.004 Y NA
 3061294 3061295 VC274080_2148 VC274080_2147   fliI TRUE 0.995 4.000 0.248 0.004 Y NA
 3061295 3061296 VC274080_2147 VC274080_2146 fliI   TRUE 0.977 15.000 0.127 0.009 Y NA
 3061298 3061299 VC274080_2144 VC274080_2143     TRUE 0.828 35.000 0.182 1.000 Y NA
 3061299 3061300 VC274080_2143 VC274080_2142   fliM TRUE 0.995 8.000 0.241 0.001 Y NA
 3061300 3061301 VC274080_2142 VC274080_2141 fliM fliN TRUE 0.970 70.000 0.741 0.001 Y NA
 3061301 3061302 VC274080_2141 VC274080_2139 fliN fliO TRUE 0.987 4.000 0.443 1.000 Y NA
 3061302 3061303 VC274080_2139 VC274080_2138 fliO fliP TRUE 0.940 -22.000 0.122 1.000 Y NA
 3061305 3061306 VC274080_2137 VC274080_2136 fliQ fliR TRUE 0.998 9.000 0.719 0.002 Y NA
 3061306 3061307 VC274080_2136 VC274080_2135 fliR flhB TRUE 0.973 10.000 0.240 1.000 Y NA
 3061309 3061310 VC274080_2133 VC274080_2132   aroC FALSE 0.005 230.000 0.081 1.000 N NA
 3061312 3061313 VC274080_2130 VC274080_2129     TRUE 0.784 39.000 0.425 NA   NA
 3061313 3061314 VC274080_2129 VC274080_2128     FALSE 0.039 208.000 0.106 NA   NA
 3061316 3061317 VC274080_2126 VC274080_2125 fabB pdxB FALSE 0.006 186.000 0.069 1.000 N NA
 3061317 3061318 VC274080_2125 VC274080_2124 pdxB   TRUE 0.983 -19.000 0.097 0.008 Y NA
 3061320 3061321 VC274080_A0114 VC274080_A0115     FALSE 0.229 101.000 0.100 NA   NA
 3061321 3061322 VC274080_A0115 VC274080_A0116     TRUE 0.673 74.000 0.471 NA   NA
 3061327 3061328 VC274080_A0120 VC274080_A0122     FALSE 0.302 30.000 0.057 NA   NA
 3061329 3061330 VC274080_A0123 VC274080_A0124     FALSE 0.022 228.000 0.000 NA   NA
 3061330 3061331 VC274080_A0124 VC274080_A0125     FALSE 0.012 269.000 0.000 NA   NA
 3061331 3061332 VC274080_A0125 VC274080_A0126     TRUE 0.835 43.000 0.700 NA   NA
 3061334 3061335 VC274080_A0128 VC274080_A0129 pncB   FALSE 0.181 31.000 0.021 1.000   NA
 3061336 3061337 VC274080_A0130 VC274080_A0131 pspE   TRUE 0.840 0.000 0.130 NA N NA
 3061337 3061338 VC274080_A0131 VC274080_A0132     FALSE 0.218 176.000 0.278 NA   NA
 3061341 3061342 VC274080_A0135 VC274080_A0136     TRUE 0.950 -85.000 0.545 NA   NA
 3061342 3061343 VC274080_A0136 VC274080_A0137     FALSE 0.004 432.000 0.000 NA   NA
 3061343 3061344 VC274080_A0137 VC274080_A0138     TRUE 0.866 41.000 0.821 NA   NA
 3061344 3061345 VC274080_A0138 VC274080_A0139     TRUE 0.980 3.000 0.627 NA   NA
 3061345 3061346 VC274080_A0139 VC274080_A0140     TRUE 0.975 6.000 0.552 NA   NA
 3061346 3061347 VC274080_A0140 VC274080_A0141     TRUE 0.918 27.000 0.863 NA   NA
 3061347 3061348 VC274080_A0141 VC274080_A0142     TRUE 0.699 69.000 0.510 NA   NA
 3061348 3061349 VC274080_A0142 VC274080_A0143     TRUE 0.985 3.000 0.862 NA   NA
 3061349 3061350 VC274080_A0143 VC274080_A0144     TRUE 0.982 7.000 0.765 NA   NA
 3061350 3061351 VC274080_A0144 VC274080_A0145     TRUE 0.981 3.000 0.673 NA   NA
 3061351 3061352 VC274080_A0145 VC274080_A0146   clpB-2 TRUE 0.867 26.000 0.471 NA   NA
 3061352 3061353 VC274080_A0146 VC274080_A0147 clpB-2   TRUE 0.969 3.000 0.118 0.016 N NA
 3061353 3061354 VC274080_A0147 VC274080_A0148     TRUE 0.862 -30.000 0.158 NA   NA
 3061354 3061355 VC274080_A0148 VC274080_A0149     TRUE 0.976 10.000 0.711 NA   NA
 3061355 3061356 VC274080_A0149 VC274080_A0150     TRUE 0.953 16.000 0.750 NA   NA
 3061356 3061357 VC274080_A0150 VC274080_A0151     TRUE 0.650 48.000 0.281 NA   NA
 3061357 3061358 VC274080_A0151 VC274080_A0152   vgrG-3 FALSE 0.014 253.000 0.000 1.000   NA
 3061358 3061359 VC274080_A0152 VC274080_A0153 vgrG-3   TRUE 0.965 -3.000 0.375 NA   NA
 3061360 3061361 VC274080_A0154 VC274080_A0155     FALSE 0.157 101.000 0.069 NA   NA
 3061362 3061363 VC274080_A0156 VC274080_A0157 rbsD rbsA TRUE 0.918 27.000 0.337 1.000 Y NA
 3061363 3061364 VC274080_A0157 VC274080_A0158 rbsA   TRUE 0.993 15.000 0.504 0.002 Y NA
 3061364 3061365 VC274080_A0158 VC274080_A0159   rbsB TRUE 0.977 55.000 0.847 0.002 Y NA
 3061365 3061366 VC274080_A0159 VC274080_A0160 rbsB rbsK TRUE 0.701 139.000 0.347 1.000 Y NA
 3061366 3061367 VC274080_A0160 VC274080_A0161 rbsK rbsR TRUE 0.949 11.000 0.500 1.000 N NA
 3061367 3061368 VC274080_A0161 VC274080_A0162 rbsR pnuC FALSE 0.025 126.000 0.068 1.000 N NA
 3061368 3061369 VC274080_A0162 VC274080_A0163 pnuC udp-2 TRUE 0.916 -3.000 0.227 1.000 N NA
 3061369 3061370 VC274080_A0163 VC274080_A0164 udp-2   FALSE 0.368 140.000 0.294 NA N NA
 3061371 3061372 VC274080_A0165 VC274080_A0166 glpQ glpT TRUE 0.881 106.000 0.396 0.001 N NA
 3061372 3061373 VC274080_A0166 VC274080_A0167 glpT   FALSE 0.005 375.000 0.000 NA   NA
 3061374 3061375 VC274080_2122 VC274080_2121 seqA pgm FALSE 0.262 109.000 0.151 NA N NA
 3061379 3061380 VC274080_2117 VC274080_2116 sdhC sdhD TRUE 0.997 -6.000 0.453 0.001 Y NA
 3061380 3061381 VC274080_2116 VC274080_2115 sdhD sdhA TRUE 0.998 1.000 0.705 0.003 Y NA
 3061381 3061382 VC274080_2115 VC274080_2114 sdhA sdhB TRUE 0.993 15.000 0.604 0.003 Y NA
 3061382 3061383 VC274080_2114 VC274080_2113 sdhB sucA FALSE 0.498 89.000 0.067 1.000 Y NA
 3061383 3061384 VC274080_2113 VC274080_2112 sucA sucB TRUE 0.946 29.000 0.667 1.000 Y NA
 3061384 3061385 VC274080_2112 VC274080_2111 sucB sucC FALSE 0.335 168.000 0.136 1.000 Y NA
 3061385 3061386 VC274080_2111 VC274080_2110 sucC sucD TRUE 0.998 0.000 0.806 0.001 Y NA
 3061387 3061388 VC274080_2109 VC274080_2108 znuB znuC TRUE 0.990 -7.000 0.755 1.000 Y NA
 3061389 3061390 VC274080_2107 VC274080_2106 znuA   FALSE 0.003 182.000 0.040 1.000 N NA
 3061390 3061391 VC274080_2106 VC274080_2105   feoA FALSE 0.001 772.000 0.000 1.000 N NA
 3061391 3061392 VC274080_2105 VC274080_2104 feoA feoB TRUE 0.992 -3.000 0.778 1.000 Y NA
 3061392 3061393 VC274080_2104 VC274080_2103 feoB   TRUE 0.954 -3.000 0.288 NA   NA
 3061394 3061395 VC274080_2102 VC274080_2101   argS FALSE 0.013 91.000 0.012 1.000 N NA
 3061398 3061399 VC274080_2098 VC274080_2097 sixA flhA FALSE 0.002 332.000 0.000 1.000 N NA
 3061399 3061400 VC274080_2097 VC274080_2096 flhA   TRUE 0.825 35.000 0.178 1.000 Y NA
 3061400 3061401 VC274080_2096 VC274080_2095     TRUE 0.968 -40.000 0.241 0.016 N NA
 3061401 3061402 VC274080_2095 VC274080_2094   fliA TRUE 0.955 -7.000 0.482 1.000 N NA
 3061402 3061403 VC274080_2094 VC274080_2093 fliA cheY-3 TRUE 0.920 22.000 0.283 0.078 N NA
 3061403 3061404 VC274080_2093 VC274080_2092 cheY-3 cheZ TRUE 0.870 56.000 0.516 1.000 Y NA
 3061404 3061405 VC274080_2092 VC274080_2091 cheZ cheA-2 TRUE 0.980 10.000 0.341 1.000 Y NA
 3061405 3061406 VC274080_2091 VC274080_2090 cheA-2 cheB-2 TRUE 0.970 27.000 0.327 0.022 Y NA
 3061406 3061407 VC274080_2090 VC274080_2089 cheB-2   TRUE 0.849 10.000 0.170 1.000 N NA
 3061407 3061408 VC274080_2089 VC274080_2088     TRUE 0.963 -7.000 0.454 1.000   NA
 3061408 3061409 VC274080_2088 VC274080_2087   cheW-1 TRUE 0.994 9.000 0.886 0.022   NA
 3061409 3061410 VC274080_2087 VC274080_2086 cheW-1   TRUE 0.803 -24.000 0.114 NA   NA
 3061410 3061411 VC274080_2086 VC274080_2085   ccmA FALSE 0.005 374.000 0.000 NA   NA
 3061411 3061412 VC274080_2085 VC274080_2084 ccmA ccmB TRUE 0.990 -3.000 0.074 0.002 Y NA
 3061412 3061413 VC274080_2084 VC274080_2083 ccmB ccmC TRUE 0.856 91.000 0.054 0.001 Y NA
 3061413 3061414 VC274080_2083 VC274080_2082 ccmC ccmD TRUE 0.968 0.000 0.501 1.000 N NA
 3061414 3061415 VC274080_2082 VC274080_2081 ccmD ccmE TRUE 0.949 -3.000 0.344 1.000 N NA
 3061415 3061416 VC274080_2081 VC274080_2080 ccmE ccmF TRUE 0.995 -3.000 0.211 0.002 Y NA
 3061416 3061417 VC274080_2080 VC274080_2079 ccmF dsbE TRUE 0.998 1.000 0.804 0.002 Y NA
 3061417 3061418 VC274080_2079 VC274080_2078 dsbE ccmH TRUE 0.989 -3.000 0.578 NA Y NA
 3061418 3061419 VC274080_2078 VC274080_2077 ccmH   TRUE 0.992 3.000 0.727 NA Y NA
 3061419 3061420 VC274080_2077 VC274080_2076   vacJ FALSE 0.514 53.000 0.239 NA N NA
 3061421 3061422 VC274080_2075 VC274080_2074     FALSE 0.014 362.000 0.175 NA   NA
 3061422 3061423 VC274080_2074 VC274080_2073     FALSE 0.092 82.000 0.024 NA   NA
 3061425 3061426 VC274080_1728 VC274080_1729 cls metC FALSE 0.148 81.000 0.110 1.000 N NA
 3061427 3061428 VC274080_1730 VC274080_1731 tag   FALSE 0.013 87.000 0.006 1.000 N NA
 3061428 3061429 VC274080_1731 VC274080_1732     TRUE 0.825 -7.000 0.150 1.000 N NA
 3061429 3061430 VC274080_1732 VC274080_1733     TRUE 0.998 2.000 0.950 0.008 Y NA
 3061430 3061431 VC274080_1733 VC274080_1734   pspC FALSE 0.074 172.000 0.133 NA N NA
 3061431 3061432 VC274080_1734 VC274080_1735 pspC pspB TRUE 0.981 -7.000 0.913 NA   NA
 3061432 3061433 VC274080_1735 VC274080_1736 pspB pspA TRUE 0.960 14.000 0.739 NA   NA
 3061434 3061435 VC274080_1737 VC274080_1738 pspF sapA FALSE 0.553 114.000 0.402 1.000 N NA
 3061435 3061436 VC274080_1738 VC274080_1739 sapA sapB TRUE 0.975 0.000 0.195 0.050 N NA
 3061436 3061437 VC274080_1739 VC274080_1740 sapB sapC TRUE 0.988 -13.000 0.210 0.050 Y NA
 3061437 3061438 VC274080_1740 VC274080_1741 sapC sapD TRUE 0.991 0.000 0.667 1.000 Y NA
 3061438 3061439 VC274080_1741 VC274080_1742 sapD sapF TRUE 0.997 -3.000 0.684 0.018 Y NA
 3061439 3061440 VC274080_1742 VC274080_1743 sapF   TRUE 0.863 1.000 0.105 NA   NA
 3061441 3061442 VC274080_1744 VC274080_1745     FALSE 0.507 -30.000 0.028 NA   NA
 3061444 3061445 VC274080_1747 VC274080_1748     FALSE 0.014 259.000 0.000 NA   NA
 3061445 3061446 VC274080_1748 VC274080_1749     FALSE 0.239 61.000 0.089 NA   NA
 3061446 3061447 VC274080_1749 VC274080_1750   torA TRUE 0.895 27.000 0.667 NA   NA
 3061447 3061448 VC274080_1750 VC274080_1751 torA torC TRUE 0.987 24.000 0.857 0.040 Y NA
 3061448 3061449 VC274080_1751 VC274080_1752 torC torE TRUE 0.791 47.000 0.207 NA Y NA
 3061449 3061450 VC274080_1752 VC274080_1753 torE   FALSE 0.009 301.000 0.000 NA   NA
 3061450 3061451 VC274080_1753 VC274080_1754     FALSE 0.031 206.000 0.000 NA   NA
 3061452 3061453 VC274080_1755 VC274080_1756     FALSE 0.076 104.000 0.015 1.000   NA
 3061453 3061454 VC274080_1756 VC274080_1757     FALSE 0.583 -7.000 0.026 NA   NA
 3061454 3061455 VC274080_1757 VC274080_1758     FALSE 0.077 133.000 0.040 NA   NA
 3061455 3061456 VC274080_1758 VC274080_1759   yciB FALSE 0.020 233.000 0.000 NA   NA
 3061456 3061457 VC274080_1759 VC274080_1760 yciB   FALSE 0.214 138.000 0.167 NA N NA
 3061457 3061458 VC274080_1760 VC274080_1761     FALSE 0.284 75.000 0.114 NA   NA
 3061458 3061459 VC274080_1761 VC274080_1762     TRUE 0.603 -91.000 0.067 NA   NA
 3061462 3061463 VC274080_1765 VC274080_1766     TRUE 0.673 114.000 0.516 NA   NA
 3061469 3061470 VC274080_1772 VC274080_1773 mukB mukE TRUE 0.998 -3.000 1.000 0.001 Y NA
 3061470 3061471 VC274080_1773 VC274080_1774 mukE mukF TRUE 0.765 -40.000 0.107 NA   NA
 3061475 3061476 VC274080_A1071 VC274080_A1070     FALSE 0.128 79.000 0.052 NA   NA
 3061479 3061480 VC274080_A1067 VC274080_A1066   ogt TRUE 0.957 39.000 0.217 0.002 Y NA
 3061480 3061481 VC274080_A1066 VC274080_A1065 ogt   TRUE 0.877 11.000 0.156 NA   NA
 3061483 3061484 VC274080_A1063 VC274080_A1062     TRUE 0.985 -3.000 0.159 0.002   NA
 3061485 3061486 VC274080_A1061 VC274080_A1060     FALSE 0.039 27.000 0.035 NA N NA
 3061486 3061487 VC274080_A1060 VC274080_A1059     TRUE 0.806 16.000 0.167 NA   NA
 3061487 3061488 VC274080_A1059 VC274080_A1058     TRUE 0.768 26.000 0.235 NA   NA
 3061488 3061489 VC274080_A1058 VC274080_A1057     FALSE 0.005 256.000 0.000 1.000 N NA
 3061490 3061491 VC274080_A1056 VC274080_A1055     FALSE 0.012 116.000 0.036 1.000 N NA
 3061492 3061493 VC274080_A1054 VC274080_A1053     TRUE 0.978 -3.000 0.651 NA   NA
 3061493 3061494 VC274080_A1053 VC274080_A1052     FALSE 0.462 152.000 0.581 NA N NA
 3061498 3061499 VC274080_A1048 VC274080_A1047     FALSE 0.299 131.000 0.150 NA   NA
 3061501 3061502 VC274080_A1045 VC274080_A1044 nemA grx2 TRUE 0.929 10.000 0.310 1.000 N NA
 3061506 3061507 VC274080_A1040 VC274080_A1039     FALSE 0.002 359.000 0.000 1.000 N NA
 3061507 3061508 VC274080_A1039 VC274080_A1038   ppsA FALSE 0.003 183.000 0.015 1.000 N NA
 3061510 3061511 VC274080_A1036 VC274080_A1035     TRUE 0.836 98.000 0.145 0.040 Y NA
 3061511 3061512 VC274080_A1035 VC274080_A1034     FALSE 0.528 123.000 0.109 1.000 Y NA
 3061513 3061514 VC274080_A1033 VC274080_A1032     FALSE 0.201 100.000 0.000 NA   NA
 3061514 3061515 VC274080_A1032 VC274080_A1031     FALSE 0.185 154.000 0.192 1.000 N NA
 3061515 3061516 VC274080_A1031 VC274080_A1030     TRUE 0.621 131.000 0.192 1.000 Y NA
 3061516 3061517 VC274080_A1030 VC274080_A1029     TRUE 0.973 20.000 0.800 1.000 Y NA
 3061518 3061519 VC274080_A1028 VC274080_A1027     TRUE 0.857 29.000 0.500 NA   NA
 3061521 3061522 VC274080_1162 VC274080_1161     TRUE 0.982 -3.000 0.771 1.000   NA
 3061522 3061523 VC274080_1161 VC274080_1160     TRUE 0.705 76.000 0.562 NA   NA
 3061526 3061527 VC274080_1157 VC274080_1156 ackA-1 pta TRUE 0.638 136.000 0.634 1.000   NA
 3061528 3061529 VC274080_1155 VC274080_1154   oppF FALSE 0.058 150.000 0.100 1.000 N NA
 3061529 3061530 VC274080_1154 VC274080_1153 oppF oppD TRUE 0.986 -21.000 0.099 0.002 Y NA
 3061530 3061531 VC274080_1153 VC274080_1152 oppD oppC TRUE 0.948 25.000 0.554 1.000 Y NA
 3061531 3061532 VC274080_1152 VC274080_1151 oppC oppB TRUE 0.993 14.000 0.870 0.049 Y NA
 3061532 3061533 VC274080_1151 VC274080_1150 oppB oppA TRUE 0.656 149.000 0.096 0.049 Y NA
 3061534 3061535 VC274080_1149 VC274080_1148     TRUE 0.892 4.000 0.176 NA N NA
 3061536 3061537 VC274080_1147 VC274080_1146     TRUE 0.993 17.000 0.857 0.021 Y NA
 3061537 3061538 VC274080_1146 VC274080_1145     TRUE 0.992 0.000 0.750 1.000 Y NA
 3061538 3061539 VC274080_1145 VC274080_1144     TRUE 0.984 12.000 0.400 0.013   NA
 3061539 3061540 VC274080_1144 VC274080_1143     TRUE 0.959 11.000 0.467 NA   NA
 3061540 3061541 VC274080_1143 VC274080_1142     TRUE 0.992 -3.000 0.800 NA Y NA
 3061541 3061542 VC274080_1142 VC274080_1141     TRUE 0.974 35.000 0.600 0.021 Y NA
 3061542 3061543 VC274080_1141 VC274080_1140     TRUE 0.990 -3.000 0.600 NA Y NA
 3061544 3061545 VC274080_1139 VC274080_1138     TRUE 0.670 45.000 0.286 NA   NA
 3061545 3061546 VC274080_1138 VC274080_1137     TRUE 0.659 79.000 0.444 NA   NA
 3061547 3061548 VC274080_1136 VC274080_1135     TRUE 0.846 13.000 0.161 NA   NA
 3061550 3061551 VC274080_1133 VC274080_1132     FALSE 0.009 302.000 0.000 NA   NA
 3061551 3061552 VC274080_1132 VC274080_1131     FALSE 0.080 119.000 0.022 NA   NA
 3061552 3061553 VC274080_1131 VC274080_1130     FALSE 0.166 39.000 0.089 NA N NA
 3061553 3061554 VC274080_1130 VC274080_1129   gap TRUE 0.757 14.000 0.167 1.000 N NA
 3061554 3061555 VC274080_1129 VC274080_1128 gap   FALSE 0.096 97.000 0.096 1.000 N NA
 3061555 3061556 VC274080_1128 VC274080_1127     FALSE 0.001 482.000 0.000 1.000 N NA
 3061556 3061557 VC274080_1127 VC274080_1126     TRUE 0.690 87.000 0.529 NA   NA
 3061565 3061566 VC274080_1118 VC274080_1117     FALSE 0.244 60.000 0.000 NA   NA
 3061570 3061571 VC274080_A0256 VC274080_A0257     FALSE 0.154 58.000 0.052 NA   NA
 3061571 3061572 VC274080_A0257 VC274080_A0258   ackA FALSE 0.012 270.000 0.000 NA   NA
 3061572 3061573 VC274080_A0258 VC274080_A0259 ackA   FALSE 0.403 143.000 0.267 NA   NA
 3061575 3061576 VC274080_A0261 VC274080_A0262     TRUE 0.980 -19.000 0.464 1.000 Y NA
 3061577 3061578 VC274080_A0263 VC274080_A0264     TRUE 0.969 -40.000 0.800 NA   NA
 3061578 3061579 VC274080_A0264 VC274080_A0265     TRUE 0.983 12.000 0.600 1.000 Y NA
 3061579 3061580 VC274080_A0265 VC274080_A0266     TRUE 0.950 6.000 0.273 1.000   NA
 3061580 3061581 VC274080_A0266 VC274080_A0267     TRUE 0.974 6.000 0.545 1.000   NA
 3061581 3061582 VC274080_A0267 VC274080_A0268     TRUE 0.948 9.000 0.098 1.000 Y NA
 3061582 3061583 VC274080_A0268 VC274080_A0269   sgaT TRUE 0.681 98.000 0.098 0.007   NA
 3061584 3061585 VC274080_A0270 VC274080_A0271     FALSE 0.465 127.000 0.262 1.000   NA
 3061586 3061587 VC274080_A0272 VC274080_A0273   amy1 FALSE 0.163 173.000 0.250 1.000 N NA
 3061589 3061590 VC274080_A0275 VC274080_A0276     FALSE 0.513 172.000 1.000 NA   NA
 3061590 3061591 VC274080_A0276 VC274080_A0277     FALSE 0.564 89.000 0.300 NA   NA
 3061591 3061592 VC274080_A0277 VC274080_A0278     TRUE 0.985 -3.000 1.000 NA   NA
 3061592 3061593 VC274080_A0278 VC274080_A0279     TRUE 0.992 -3.000 0.800 1.000 Y NA
 3061593 3061594 VC274080_A0279 VC274080_A0280     TRUE 0.847 24.000 0.333 NA   NA
 3061594 3061595 VC274080_A0280 VC274080_A0281     TRUE 0.945 -43.000 0.429 NA   NA
 3061595 3061596 VC274080_A0281 VC274080_A0282     TRUE 0.681 43.000 0.286 NA   NA
 3061596 3061597 VC274080_A0282 VC274080_A0283     TRUE 0.874 24.000 0.429 NA   NA
 3061597 3061598 VC274080_A0283 VC274080_A0284     TRUE 0.587 110.000 0.333 NA   NA
 3061598 3061599 VC274080_A0284 VC274080_A0285     TRUE 0.588 106.000 0.333 NA   NA
 3061599 3061600 VC274080_A0285 VC274080_A0286     TRUE 0.889 11.000 0.176 1.000   NA
 3061603 3061604 VC274080_A0289 VC274080_A0290 emrD-3   FALSE 0.005 248.000 0.000 1.000 N NA
 3061604 3061605 VC274080_A0290 VC274080_A0291     FALSE 0.008 220.000 0.000 1.000 N NA
 3061605 3061606 VC274080_A0291 VC274080_A0292     TRUE 0.927 16.000 0.625 1.000 N NA
 3061606 3061607 VC274080_A0292 VC274080_A0293   dacA-2 FALSE 0.381 165.000 0.600 1.000 N NA
 3061607 3061608 VC274080_A0293 VC274080_A0294 dacA-2   TRUE 0.981 -3.000 0.750 NA   NA
 3061608 3061609 VC274080_A0294 VC274080_A0295     FALSE 0.553 65.000 0.250 NA   NA
 3061614 3061615 VC274080_A0300 VC274080_A0301 gcvH glyA-2 TRUE 0.660 37.000 0.054 1.000 Y NA
 3061616 3061617 VC274080_A0302 VC274080_A0303   gcvT FALSE 0.006 244.000 0.006 1.000   NA
 3061619 3061620 VC274080_A1123 VC274080_A1122   putA FALSE 0.002 340.000 0.000 1.000 N NA
 3061620 3061621 VC274080_A1122 VC274080_A1121 putA   FALSE 0.344 22.000 0.050 1.000   NA
 3061621 3061622 VC274080_A1121 VC274080_A1120   putP FALSE 0.359 73.000 0.149 1.000   NA
 3061622 3061623 VC274080_A1120 VC274080_A1119 putP   FALSE 0.017 184.000 0.031 1.000   NA
 3061623 3061624 VC274080_A1119 VC274080_A1118     FALSE 0.006 330.000 0.000 1.000   NA
 3061624 3061625 VC274080_A1118 VC274080_A1117     FALSE 0.014 198.000 0.092 1.000 N NA
 3061625 3061626 VC274080_A1117 VC274080_A1116     FALSE 0.024 173.000 0.092 1.000 N NA
 3061626 3061627 VC274080_A1116 VC274080_A1115     FALSE 0.558 80.000 0.286 NA   NA
 3061627 3061628 VC274080_A1115 VC274080_A1114     FALSE 0.010 292.000 0.000 NA   NA
 3061630 3061631 VC274080_A1112 VC274080_A1111 speF potE TRUE 0.816 68.000 0.391 1.000 Y NA
 3061634 3061635 VC274080_A1108 VC274080_A1107     FALSE 0.467 94.000 0.214 NA   NA
 3061636 3061637 VC274080_A1106 VC274080_A1105     FALSE 0.004 390.000 0.000 1.000   NA
 3061639 3061640 VC274080_A1103 VC274080_A1102     FALSE 0.402 22.000 0.057 NA   NA
 3061640 3061641 VC274080_A1102 VC274080_A1101     FALSE 0.026 182.000 0.045 NA   NA
 3061641 3061642 VC274080_A1101 VC274080_A1099     FALSE 0.091 76.000 0.021 NA   NA
 3061645 3061646 VC274080_A1097 VC274080_A1096   mtlR FALSE 0.100 114.000 0.041 NA   NA
 3061646 3061647 VC274080_A1096 VC274080_A1095 mtlR mtlD FALSE 0.508 49.000 0.230 NA N NA
 3061647 3061648 VC274080_A1095 VC274080_A1094 mtlD mtlA TRUE 0.887 101.000 0.292 0.053 Y NA
 3061648 3061649 VC274080_A1094 VC274080_A1093 mtlA   FALSE 0.059 139.000 0.025 NA   NA
 3061650 3061651 VC274080_A1092 VC274080_A1091 tagE-2   TRUE 0.751 -90.000 0.111 NA   NA
 3061652 3061653 VC274080_A1090 VC274080_A1089     FALSE 0.012 113.000 0.018 1.000 N NA
 3061653 3061654 VC274080_A1089 VC274080_A1088     TRUE 0.997 1.000 0.771 0.049 Y NA
 3061654 3061655 VC274080_A1088 VC274080_A1087     TRUE 0.938 36.000 0.771 0.049 N NA
 3061655 3061656 VC274080_A1087 VC274080_A1086     TRUE 0.969 0.000 0.548 1.000 N NA
 3061659 3061660 VC274080_A1083 VC274080_A1082     TRUE 0.848 9.000 0.158 1.000 N NA
 3061660 3061661 VC274080_A1082 VC274080_A1081     FALSE 0.012 268.000 0.000 NA   NA
 3061663 3061664 VC274080_1560 VC274080_1561     TRUE 0.828 31.000 0.420 NA   NA
 3061668 3061669 VC274080_1565 VC274080_1566   aroH TRUE 0.966 -16.000 0.032 0.001   NA
 3061669 3061670 VC274080_1566 VC274080_1567 aroH   FALSE 0.534 12.000 0.038 NA   NA
 3061671 3061672 VC274080_1568 VC274080_1569 cobB   FALSE 0.122 98.000 0.052 NA   NA
 3061672 3061673 VC274080_1569 VC274080_1570   fdnI TRUE 0.880 -13.000 0.157 NA   NA
 3061673 3061674 VC274080_1570 VC274080_1571 fdnI fdhB TRUE 0.995 1.000 0.217 0.002 Y NA
 3061674 3061675 VC274080_1571 VC274080_1572 fdhB   TRUE 0.996 12.000 0.750 0.002 Y NA
 3061675 3061676 VC274080_1572 VC274080_1573     TRUE 0.968 12.000 0.708 NA   NA
 3061676 3061677 VC274080_1573 VC274080_1574     FALSE 0.460 78.000 0.200 NA   NA
 3061677 3061678 VC274080_1574 VC274080_1575     TRUE 0.941 26.000 0.347 0.039   NA
 3061678 3061679 VC274080_1575 VC274080_1576     FALSE 0.102 199.000 0.195 NA   NA
 3061679 3061680 VC274080_1576 VC274080_1577     TRUE 0.969 -73.000 0.901 NA   NA
 3061682 3061683 VC274080_1579 VC274080_1580     FALSE 0.120 212.000 0.000 0.100   NA
 3061683 3061684 VC274080_1580 VC274080_1581     TRUE 0.990 -10.000 0.312 0.100 Y NA
 3061685 3061686 VC274080_1582 VC274080_1583     TRUE 0.988 7.000 0.524 NA Y NA
 3061686 3061687 VC274080_1583 VC274080_1584     TRUE 0.743 9.000 0.115 1.000 N NA
 3061687 3061688 VC274080_1584 VC274080_1585   mobA FALSE 0.107 -46.000 0.035 1.000 N NA
 3061688 3061689 VC274080_1585 VC274080_1586 mobA moeA-1 TRUE 0.989 -3.000 0.073 0.003 Y NA
 3061690 3061691 VC274080_1587 VC274080_1588     TRUE 0.966 -27.000 0.667 NA   NA
 3061691 3061692 VC274080_1588 VC274080_1589     TRUE 0.970 11.000 0.667 NA   NA
 3061694 3061695 VC274080_1591 VC274080_1592     FALSE 0.178 164.000 0.167 NA   NA
 3061700 3061701 VC274080_1597 VC274080_1598     FALSE 0.009 232.000 0.033 NA   NA
 3061701 3061702 VC274080_1598 VC274080_1599     FALSE 0.017 243.000 0.000 NA   NA
 3061702 3061703 VC274080_1599 VC274080_1600     FALSE 0.019 204.000 0.054 NA   NA
 3061704 3061705 VC274080_1601 VC274080_1602 ligA-2   FALSE 0.008 303.000 0.000 1.000   NA
 3061705 3061706 VC274080_1602 VC274080_1603   tonB2 FALSE 0.479 24.000 0.000 1.000   NA
 3061706 3061707 VC274080_1603 VC274080_1604 tonB2 exbD2 TRUE 0.947 0.000 0.312 1.000 N NA
 3061707 3061708 VC274080_1604 VC274080_1605 exbD2 exbB2 TRUE 0.996 -3.000 0.600 0.060 Y NA
 3061708 3061709 VC274080_1605 VC274080_1606 exbB2   TRUE 0.996 7.000 0.462 0.012 Y NA
 3061709 3061710 VC274080_1606 VC274080_1607     TRUE 0.985 0.000 0.846 NA   NA
 3061711 3061712 VC274080_0011 VC274080_0012   dnaN TRUE 0.638 58.000 0.328 1.000   NA
 3061712 3061713 VC274080_0012 VC274080_0013 dnaN recF TRUE 0.951 18.000 0.318 1.000 Y NA
 3061713 3061714 VC274080_0013 VC274080_0014 recF gyrB TRUE 0.979 21.000 0.249 0.005 Y NA
 3061714 3061715 VC274080_0014 VC274080_0015 gyrB   FALSE 0.005 356.000 0.000 1.000   NA
 3061715 3061716 VC274080_0015 VC274080_0016     TRUE 0.963 10.000 0.455 NA   NA
 3061716 3061717 VC274080_0016 VC274080_0017   ibpA FALSE 0.011 276.000 0.000 NA   NA
 3061718 3061719 VC274080_0018 VC274080_0019 avtA glyS FALSE 0.000 319.000 0.005 1.000 N NA
 3061719 3061720 VC274080_0019 VC274080_0020 glyS glyQ TRUE 0.995 15.000 0.651 0.001 Y NA
 3061721 3061722 VC274080_0021 VC274080_0022     FALSE 0.136 106.000 0.059 NA   NA
 3061725 3061726 VC274080_0025 VC274080_0026   ilvA FALSE 0.005 248.000 0.000 1.000 N NA
 3061726 3061727 VC274080_0026 VC274080_0027 ilvA ilvD TRUE 0.958 4.000 0.106 1.000 Y NA
 3061727 3061728 VC274080_0027 VC274080_0028 ilvD ilvE TRUE 0.934 10.000 0.075 1.000 Y NA
 3061728 3061729 VC274080_0028 VC274080_0029 ilvE ilvM TRUE 0.917 -9.000 0.205 1.000   NA
 3061729 3061730 VC274080_0029 VC274080_0030 ilvM ilvG TRUE 0.994 12.000 0.943 0.002   NA
 3061731 3061732 VC274080_0031 VC274080_0032     FALSE 0.013 90.000 0.014 1.000 N NA
 3061733 3061734 VC274080_0033 VC274080_0034 tpcG   FALSE 0.379 31.000 0.082 NA   NA
 3061734 3061735 VC274080_0034 VC274080_0035     TRUE 0.820 12.000 0.125 NA   NA
 3061735 3061736 VC274080_0035 VC274080_0036     FALSE 0.002 354.000 0.036 NA   NA
 3061736 3061737 VC274080_0036 VC274080_0037     FALSE 0.437 97.000 0.196 NA   NA
 3061738 3061739 VC274080_0038 VC274080_0039     FALSE 0.245 78.000 0.102 NA   NA
 3061740 3061741 VC274080_0040 VC274080_0041   trkH-1 TRUE 0.892 -87.000 0.234 NA   NA
 3061741 3061742 VC274080_0041 VC274080_0042 trkH-1 trkA TRUE 0.986 12.000 0.126 0.003 Y NA
 3061742 3061743 VC274080_0042 VC274080_0043 trkA sun FALSE 0.206 62.000 0.122 1.000 N NA
 3061743 3061744 VC274080_0043 VC274080_0044 sun fmt TRUE 0.893 32.000 0.305 1.000 Y NA
 3061744 3061745 VC274080_0044 VC274080_0045 fmt def-1 TRUE 0.956 18.000 0.058 0.016 Y NA
 3061746 3061747 VC274080_0046 VC274080_0047     TRUE 0.662 0.000 0.043 1.000   NA
 3061747 3061748 VC274080_0047 VC274080_0048   smg TRUE 0.890 3.000 0.124 NA   NA
 3061748 3061749 VC274080_0048 VC274080_0049 smg   TRUE 0.958 8.000 0.331 NA   NA
 3061750 3061751 VC274080_0050 VC274080_0051 purK purE TRUE 0.994 4.000 0.136 0.001 Y NA
 3061752 3061753 VC274080_0052 VC274080_0053   hemF FALSE 0.170 19.000 0.066 NA N NA
 3061753 3061754 VC274080_0053 VC274080_0054 hemF   FALSE 0.105 62.000 0.093 1.000 N NA
 3061754 3061755 VC274080_0054 VC274080_0056     TRUE 0.785 -3.000 0.078 NA   NA
 3061757 3061758 VC274080_1938 VC274080_1937     TRUE 0.968 0.000 0.372 NA   NA
 3061758 3061759 VC274080_1937 VC274080_1936     TRUE 0.757 53.000 0.516 NA   NA
 3061759 3061760 VC274080_1936 VC274080_1935     TRUE 0.800 28.000 0.310 NA   NA
 3061760 3061761 VC274080_1935 VC274080_1934     FALSE 0.110 180.000 0.151 NA   NA
 3061764 3061765 VC274080_1931 VC274080_1930     FALSE 0.010 285.000 0.000 1.000   NA
 3061765 3061766 VC274080_1930 VC274080_1929     FALSE 0.006 335.000 0.000 NA   NA
 3061766 3061767 VC274080_1929 VC274080_1928   mfd FALSE 0.110 140.000 0.071 NA   NA
 3061767 3061768 VC274080_1928 VC274080_1927 mfd   TRUE 0.677 3.000 0.039 NA   NA
 3061769 3061770 VC274080_1926 VC274080_1925     TRUE 0.962 -7.000 0.175 0.060 N NA
 3061770 3061771 VC274080_1925 VC274080_1924     TRUE 0.962 1.000 0.125 0.060 N NA
 3061773 3061774 VC274080_1922 VC274080_1921   msbA TRUE 0.766 31.000 0.075 0.064   NA
 3061774 3061775 VC274080_1921 VC274080_1920 msbA lpxK TRUE 0.913 0.000 0.205 1.000 N NA
 3061775 3061776 VC274080_1920 VC274080_1919 lpxK   TRUE 0.926 -19.000 0.263 NA   NA
 3061776 3061777 VC274080_1919 VC274080_1918   kdsB TRUE 0.954 0.000 0.265 NA   NA
 3061778 3061779 VC274080_1917 VC274080_1916     TRUE 0.966 13.000 0.761 NA   NA
 3061779 3061780 VC274080_1916 VC274080_1915     TRUE 0.620 145.000 0.683 NA   NA
 3061780 3061781 VC274080_1915 VC274080_1914     FALSE 0.017 241.000 0.000 NA   NA
 3061781 3061782 VC274080_1914 VC274080_1913     FALSE 0.284 109.000 0.120 NA   NA
 3061782 3061783 VC274080_1913 VC274080_1912   pflA FALSE 0.120 66.000 0.043 NA   NA
 3061785 3061786 VC274080_1910 VC274080_1909   pflB FALSE 0.362 136.000 0.200 NA   NA
 3061786 3061787 VC274080_1909 VC274080_1908 pflB   FALSE 0.047 179.000 0.080 NA   NA
 3061788 3061789 VC274080_1907 VC274080_1906     FALSE 0.526 179.000 0.533 1.000 Y NA
 3061789 3061790 VC274080_1906 VC274080_1905     TRUE 0.926 106.000 0.571 0.060 Y NA
 3061790 3061791 VC274080_1905 VC274080_1904     TRUE 0.998 3.000 0.903 0.016 Y NA
 3061794 3061795 VC274080_1036 VC274080_1037 zipA ligA-1 FALSE 0.191 133.000 0.106 1.000   NA
 3061795 3061796 VC274080_1037 VC274080_1038 ligA-1   FALSE 0.001 632.000 0.000 1.000 N NA
 3061796 3061797 VC274080_1038 VC274080_1039     TRUE 0.601 77.000 0.333 NA   NA
 3061797 3061798 VC274080_1039 VC274080_1040     FALSE 0.272 61.000 0.100 NA   NA
 3061799 3061800 VC274080_1041 VC274080_1042     TRUE 0.982 8.000 0.313 NA Y NA
 3061800 3061801 VC274080_1042 VC274080_1043     FALSE 0.015 431.000 0.075 NA Y NA
 3061801 3061802 VC274080_1043 VC274080_1044     FALSE 0.026 172.000 0.022 NA   NA
 3061802 3061803 VC274080_1044 VC274080_1045     FALSE 0.092 75.000 0.024 NA   NA
 3061803 3061804 VC274080_1045 VC274080_1046   rcp FALSE 0.276 43.000 0.083 1.000   NA
 3061806 3061807 VC274080_1048 VC274080_1049   toxS FALSE 0.158 41.000 0.027 NA   NA
 3061807 3061808 VC274080_1049 VC274080_1050 toxS toxR TRUE 0.946 10.000 0.294 NA   NA
 3061809 3061810 VC274080_1051 VC274080_1052 htpG adk FALSE 0.015 335.000 0.035 0.098 N NA
 3061810 3061811 VC274080_1052 VC274080_1053 adk hemH FALSE 0.145 115.000 0.113 1.000 N NA
 3061813 3061814 VC274080_1055 VC274080_1056     FALSE 0.037 162.000 0.036 NA   NA
 3061815 3061816 VC274080_1057 VC274080_1058 asnB   FALSE 0.002 196.000 0.027 1.000 N NA
 3061816 3061817 VC274080_1058 VC274080_1059   nagC FALSE 0.344 95.000 0.200 1.000 N NA
 3061817 3061818 VC274080_1059 VC274080_1060 nagC nagA-1 TRUE 0.990 3.000 0.571 1.000 Y NA
 3061819 3061820 VC274080_1061 VC274080_1062 nagE glnS FALSE 0.001 248.000 0.006 1.000 N NA
 3061820 3061821 VC274080_1062 VC274080_1064 glnS   FALSE 0.273 165.000 0.008 0.045   NA
 3061823 3061824 VC274080_1065 VC274080_1066 truA accD FALSE 0.003 174.000 0.044 1.000 N NA
 3061824 3061825 VC274080_1066 VC274080_1067 accD folC TRUE 0.673 45.000 0.383 1.000 N NA
 3061825 3061826 VC274080_1067 VC274080_1068 folC dedD TRUE 0.945 1.000 0.216 NA   NA
 3061826 3061827 VC274080_1068 VC274080_1069 dedD   FALSE 0.317 63.000 0.116 NA   NA
 3061827 3061828 VC274080_1069 VC274080_1070   purF TRUE 0.732 33.000 0.262 1.000   NA
 3061829 3061830 VC274080_1071 VC274080_1072   rnt FALSE 0.178 101.000 0.084 1.000   NA
 3061831 3061832 VC274080_1113 VC274080_1112 dnaX apt FALSE 0.306 19.000 0.088 1.000 N NA
 3061832 3061833 VC274080_1112 VC274080_1111 apt   FALSE 0.082 132.000 0.043 NA   NA
 3061833 3061834 VC274080_1111 VC274080_1110     TRUE 0.829 0.000 0.000 NA   NA
 3061834 3061835 VC274080_1110 VC274080_1109     FALSE 0.070 170.000 0.000 NA   NA
 3061837 3061838 VC274080_1107 VC274080_1106   yfcX FALSE 0.010 127.000 0.011 1.000 N NA
 3061838 3061839 VC274080_1106 VC274080_1105 yfcX hadHB TRUE 0.988 0.000 0.430 1.000 Y NA
 3061840 3061841 VC274080_1104 VC274080_1103     TRUE 0.982 -7.000 0.946 NA   NA
 3061841 3061842 VC274080_1103 VC274080_1102   fadL-2 FALSE 0.014 260.000 0.000 NA   NA
 3061842 3061843 VC274080_1102 VC274080_1101 fadL-2 fadL-1 FALSE 0.142 303.000 0.000 0.006 Y NA
 3061846 3061847 VC274080_1098 VC274080_1097 asmA udk FALSE 0.012 98.000 0.037 NA N NA
 3061847 3061848 VC274080_1097 VC274080_1096 udk mrp FALSE 0.236 159.000 0.073 0.098 N NA
 3061849 3061850 VC274080_1095 VC274080_1094 metG   FALSE 0.023 226.000 0.000 NA   NA
 3061851 3061852 VC274080_1093 VC274080_1092 udp-1   FALSE 0.001 446.000 0.000 1.000 N NA
 3061852 3061853 VC274080_1092 VC274080_1091     FALSE 0.574 113.000 0.125 0.052 N NA
 3061855 3061856 VC274080_1089 VC274080_1088 moaE moaD TRUE 0.997 2.000 0.501 0.003 Y NA
 3061856 3061857 VC274080_1088 VC274080_1087 moaD moaC TRUE 0.993 -3.000 0.175 0.003 Y NA
 3061857 3061858 VC274080_1087 VC274080_1086 moaC moaB TRUE 0.990 8.000 0.109 0.003 Y NA
 3061858 3061859 VC274080_1086 VC274080_1085 moaB moaA TRUE 0.884 60.000 0.108 0.003 Y NA
 3061861 3061862 VC274080_1084 VC274080_1082 luxU luxO TRUE 0.980 4.000 0.654 NA   NA
 3061862 3061863 VC274080_1082 VC274080_1081 luxO uvrB FALSE 0.015 389.000 0.000 0.098 N NA
 3061863 3061864 VC274080_1081 VC274080_1080 uvrB   FALSE 0.004 415.000 0.000 NA   NA
 3061865 3061866 VC274080_1079 VC274080_1078     FALSE 0.089 160.000 0.000 NA   NA
 3061866 3061867 VC274080_1078 VC274080_1077     TRUE 0.996 0.000 0.564 0.039 Y NA
 3061867 3061868 VC274080_1077 VC274080_1076     TRUE 0.996 9.000 0.537 0.014 Y NA
 3061868 3061869 VC274080_1076 VC274080_1075     TRUE 0.997 0.000 0.814 0.039 Y NA
 3061869 3061870 VC274080_1075 VC274080_1074     TRUE 0.996 12.000 0.924 0.039 Y NA
 3061870 3061871 VC274080_1074 VC274080_1073     TRUE 0.998 2.000 0.908 0.039 Y NA
 3061872 3061873 VC274080_1179 VC274080_1180     TRUE 0.982 0.000 0.722 NA   NA
 3061873 3061874 VC274080_1180 VC274080_1181   cfa TRUE 0.921 -67.000 0.311 NA   NA
 3061874 3061875 VC274080_1181 VC274080_1182 cfa   TRUE 0.978 3.000 0.588 NA   NA
 3061875 3061876 VC274080_1182 VC274080_1183     TRUE 0.937 -67.000 0.387 NA   NA
 3061876 3061877 VC274080_1183 VC274080_1184     TRUE 0.967 -3.000 0.395 NA   NA
 3061878 3061879 VC274080_1185 VC274080_1186 purB   FALSE 0.261 58.000 0.093 NA   NA
 3061879 3061880 VC274080_1186 VC274080_1187   trmU TRUE 0.742 23.000 0.180 NA   NA
 3061883 3061884 VC274080_1190 VC274080_1191     FALSE 0.038 197.000 0.000 NA   NA
 3061884 3061885 VC274080_1191 VC274080_1192   hisG FALSE 0.114 150.000 0.000 NA   NA
 3061885 3061886 VC274080_1192 VC274080_1193 hisG hisD TRUE 0.993 5.000 0.171 0.003 Y NA
 3061886 3061887 VC274080_1193 VC274080_1194 hisD hisC TRUE 0.996 4.000 0.294 0.003 Y NA
 3061887 3061888 VC274080_1194 VC274080_1195 hisC hisB TRUE 0.954 52.000 0.341 0.003 Y NA
 3061888 3061889 VC274080_1195 VC274080_1196 hisB hisH TRUE 0.992 0.000 0.128 0.003 Y NA
 3061889 3061890 VC274080_1196 VC274080_1197 hisH hisA TRUE 0.945 43.000 0.210 0.003 Y NA
 3061890 3061891 VC274080_1197 VC274080_1198 hisA hisF TRUE 0.995 -18.000 0.433 0.003 Y NA
 3061891 3061892 VC274080_1198 VC274080_1199 hisF hisI TRUE 0.996 -3.000 0.430 0.003 Y NA
 3061896 3061897 VC274080_1203 VC274080_1204   clpA TRUE 0.829 39.000 0.596 NA   NA
 3061898 3061899 VC274080_1205 VC274080_1206   grxA FALSE 0.031 202.000 0.000 1.000   NA
 3061901 3061902 VC274080_1208 VC274080_1209     FALSE 0.003 308.000 0.000 1.000 N NA
 3061902 3061903 VC274080_1209 VC274080_1210     FALSE 0.466 110.000 0.212 NA   NA
 3061903 3061904 VC274080_1210 VC274080_1211     FALSE 0.162 93.000 0.071 NA   NA
 3061904 3061905 VC274080_1211 VC274080_1212     TRUE 0.634 21.000 0.113 NA   NA
 3061907 3061908 VC274080_1214 VC274080_1215     FALSE 0.232 191.000 0.412 NA   NA
 3061908 3061909 VC274080_1215 VC274080_1216     TRUE 0.992 -3.000 0.857 1.000 Y NA
 3061910 3061911 VC274080_1217 VC274080_1218     FALSE 0.080 122.000 0.012 NA   NA
 3061914 3061915 VC274080_A0661 VC274080_A0660   fhs FALSE 0.078 128.000 0.095 1.000 N NA
 3061915 3061916 VC274080_A0660 VC274080_A0659 fhs   TRUE 0.870 34.000 0.667 NA   NA
 3061916 3061917 VC274080_A0659 VC274080_A0658   mscL FALSE 0.220 33.000 0.007 NA   NA
 3061917 3061918 VC274080_A0658 VC274080_A0657 mscL   TRUE 0.653 -3.000 0.007 NA   NA
 3061918 3061919 VC274080_A0657 VC274080_A0656   elbB FALSE 0.063 137.000 0.028 NA   NA
 3061919 3061920 VC274080_A0656 VC274080_A0655 elbB   TRUE 0.637 5.000 0.028 NA   NA
 3061922 3061923 VC274080_A0653 VC274080_A0652   phnX FALSE 0.028 165.000 0.030 1.000   NA
 3061923 3061924 VC274080_A0652 VC274080_A0651 phnX   FALSE 0.578 7.000 0.018 1.000   NA
 3061924 3061925 VC274080_A0651 VC274080_A0650   phnW TRUE 0.953 18.000 0.037 0.015 Y NA
 3061926 3061927 VC274080_A0649 VC274080_A0648     FALSE 0.268 214.000 0.333 0.047 N NA
 3061927 3061928 VC274080_A0648 VC274080_A0647     TRUE 0.983 -67.000 0.762 0.047 N NA
 3061928 3061929 VC274080_A0647 VC274080_A0646     TRUE 0.872 25.000 0.609 1.000 N NA
 3061929 3061930 VC274080_A0646 VC274080_A0645     TRUE 0.693 66.000 0.478 NA   NA
 3061934 3061935 VC274080_A0641 VC274080_A0640     FALSE 0.332 54.000 0.109 NA   NA
 3061935 3061936 VC274080_A0640 VC274080_A0639     FALSE 0.032 196.000 0.121 1.000 N NA
 3061936 3061937 VC274080_A0639 VC274080_A0638     TRUE 0.993 9.000 0.848 0.047   NA
 3061937 3061938 VC274080_A0638 VC274080_A0637     TRUE 0.993 -3.000 0.833 0.047   NA
 3061938 3061939 VC274080_A0637 VC274080_A0636     TRUE 0.981 -3.000 0.758 1.000   NA
 3061940 3061941 VC274080_A0635 VC274080_A0634     TRUE 0.902 -3.000 0.147 NA   NA
 3061942 3061943 VC274080_A0633 VC274080_A0632     TRUE 0.993 12.000 0.314 0.002 Y NA
 3061949 3061950 VC274080_A0626 VC274080_A0625     TRUE 0.649 81.000 0.414 NA   NA
 3061956 3061957 VC274080_2684 VC274080_2683     TRUE 0.964 0.000 0.333 NA   NA
 3061957 3061958 VC274080_2683 VC274080_2682     TRUE 0.931 0.000 0.182 NA   NA
 3061958 3061959 VC274080_2682 VC274080_2681     TRUE 0.952 -15.000 0.375 NA   NA
 3061959 3061960 VC274080_2681 VC274080_2680     TRUE 0.956 -10.000 0.375 NA   NA
 3061960 3061961 VC274080_2680 VC274080_2679     TRUE 0.982 3.000 0.692 NA   NA
 3061961 3061962 VC274080_2679 VC274080_2678     TRUE 0.953 -3.000 0.281 NA   NA
 3061962 3061963 VC274080_2678 VC274080_2677     TRUE 0.796 -7.000 0.094 NA   NA
 3061963 3061964 VC274080_2677 VC274080_2676     TRUE 0.727 12.000 0.000 NA   NA
 3061964 3061965 VC274080_2676 VC274080_2675     TRUE 0.692 126.000 0.667 NA   NA
 3061965 3061966 VC274080_2675 VC274080_2674     TRUE 0.872 0.000 0.111 NA   NA
 3061966 3061967 VC274080_2674 VC274080_2673     TRUE 0.955 15.000 0.720 NA   NA
 3061967 3061968 VC274080_2673 VC274080_2672     TRUE 0.950 3.000 0.240 NA   NA
 3061968 3061969 VC274080_2672 VC274080_2671     TRUE 0.672 14.000 0.000 NA   NA
 3061969 3061970 VC274080_2671 VC274080_2670     TRUE 0.814 -3.000 0.000 NA   NA
 3061970 3061971 VC274080_2670 VC274080_2669     TRUE 0.963 0.000 0.317 NA   NA
 3061971 3061972 VC274080_2669 VC274080_2668     TRUE 0.832 6.000 0.098 NA   NA
 3061972 3061973 VC274080_2668 VC274080_2667     TRUE 0.637 89.000 0.400 NA   NA
 3061973 3061974 VC274080_2667 VC274080_2666     TRUE 0.935 3.000 0.190 NA   NA
 3061974 3061975 VC274080_2666 VC274080_2665     FALSE 0.005 375.000 0.000 NA   NA
 3061975 3061976 VC274080_2665 VC274080_2664     TRUE 0.975 0.000 0.500 NA   NA
 3061976 3061977 VC274080_2664 VC274080_2663     TRUE 0.972 -3.000 0.500 NA   NA
 3061977 3061978 VC274080_2663 VC274080_2662     TRUE 0.981 -3.000 0.750 NA   NA
 3061978 3061979 VC274080_2662 VC274080_2661     TRUE 0.868 12.000 0.167 NA   NA
 3061979 3061980 VC274080_2661 VC274080_2660     TRUE 0.960 -7.000 0.381 NA   NA
 3061980 3061981 VC274080_2660 VC274080_2659     TRUE 0.945 -3.000 0.238 NA   NA
 3061981 3061982 VC274080_2659 VC274080_2658     TRUE 0.971 1.000 0.400 NA   NA
 3061982 3061983 VC274080_2658 VC274080_2657     TRUE 0.962 12.000 0.600 NA   NA
 3061983 3061984 VC274080_2657 VC274080_2656     TRUE 0.847 9.000 0.111 NA   NA
 3061984 3061985 VC274080_2656 VC274080_2655     TRUE 0.946 0.000 0.222 NA   NA
 3061985 3061986 VC274080_2655 VC274080_2654     TRUE 0.964 -3.000 0.364 NA   NA
 3061986 3061987 VC274080_2654 VC274080_2653     TRUE 0.957 -24.000 0.500 NA   NA
 3061987 3061988 VC274080_2653 VC274080_2652     TRUE 0.969 0.000 0.375 NA   NA
 3061988 3061989 VC274080_2652 VC274080_2651     TRUE 0.681 85.000 0.500 NA   NA
 3061989 3061990 VC274080_2651 VC274080_2650     FALSE 0.003 515.000 0.000 NA   NA
 3061990 3061991 VC274080_2650 VC274080_2649     TRUE 0.697 13.000 0.000 NA   NA
 3061991 3061992 VC274080_2649 VC274080_2648     TRUE 0.828 3.000 0.000 NA   NA
 3061992 3061993 VC274080_2648 VC274080_2647     FALSE 0.212 80.000 0.000 NA   NA
 3061993 3061994 VC274080_2647 VC274080_2646     TRUE 0.814 -3.000 0.000 NA   NA
 3061994 3061995 VC274080_2646 VC274080_2645     FALSE 0.211 84.000 0.000 NA   NA
 3061995 3061996 VC274080_2645 VC274080_2644     FALSE 0.105 153.000 0.000 NA   NA
 3061996 3061997 VC274080_2644 VC274080_2643     TRUE 0.973 -16.000 0.750 NA   NA
 3061997 3061998 VC274080_2643 VC274080_2642     TRUE 0.978 -7.000 0.750 NA   NA
 3061998 3061999 VC274080_2642 VC274080_2641     TRUE 0.781 10.000 0.000 NA   NA
 3061999 3062000 VC274080_2641 VC274080_2640     TRUE 0.761 -13.000 0.000 NA   NA
 3062000 3062001 VC274080_2640 VC274080_2639     TRUE 0.964 -34.000 0.667 NA   NA
 3062001 3062002 VC274080_2639 VC274080_2638     TRUE 0.781 10.000 0.000 NA   NA
 3062002 3062003 VC274080_2638 VC274080_2637     TRUE 0.781 10.000 0.000 NA   NA
 3062003 3062004 VC274080_2637 VC274080_2636     TRUE 0.980 8.000 0.750 NA   NA
 3062004 3062005 VC274080_2636 VC274080_2635     TRUE 0.962 27.000 0.500 0.005   NA
 3062005 3062006 VC274080_2635 VC274080_2634     TRUE 0.941 12.000 0.000 0.042   NA
 3062007 3062008 VC274080_2633 VC274080_2632     FALSE 0.009 290.000 0.000 1.000   NA
 3062008 3062009 VC274080_2632 VC274080_2631     TRUE 0.968 -16.000 0.616 NA   NA
 3062009 3062010 VC274080_2631 VC274080_2630     TRUE 0.988 -16.000 0.770 NA Y NA
 3062010 3062011 VC274080_2630 VC274080_2629     TRUE 0.988 -10.000 0.680 NA Y NA
 3062011 3062012 VC274080_2629 VC274080_2628   pilQ TRUE 0.991 5.000 0.668 NA Y NA
 3062014 3062015 VC274080_0335 VC274080_0334     FALSE 0.110 66.000 0.008 NA   NA
 3062016 3062017 VC274080_0333 VC274080_0332     TRUE 0.881 28.000 0.609 1.000   NA
 3062019 3062020 VC274080_0330 VC274080_0329     TRUE 0.991 -3.000 0.706 1.000 Y NA
 3062020 3062021 VC274080_0329 VC274080_0328     TRUE 0.987 -9.000 0.650 1.000 Y NA
 3062021 3062022 VC274080_0328 VC274080_0327     TRUE 0.826 59.000 0.360 1.000 Y NA
 3062024 3062025 VC274080_0325 VC274080_0324     FALSE 0.157 156.000 0.125 NA   NA
 3062025 3062026 VC274080_0324 VC274080_0323   recQ TRUE 0.675 -7.000 0.054 NA   NA
 3062026 3062027 VC274080_0323 VC274080_0322 recQ   FALSE 0.096 82.000 0.011 NA   NA
 3062028 3062029 VC274080_0321 VC274080_0320 rarD ggt FALSE 0.033 162.000 0.020 NA   NA
 3062029 3062030 VC274080_0320 VC274080_0319 ggt   FALSE 0.010 148.000 0.065 1.000 N NA
 3062030 3062031 VC274080_0319 VC274080_0318     FALSE 0.323 75.000 0.182 1.000 N NA
 3062032 3062033 VC274080_0317 VC274080_0316 uvrD prlC FALSE 0.008 138.000 0.036 1.000 N NA
 3062034 3062035 VC274080_0315 VC274080_0314   gor FALSE 0.219 106.000 0.100 1.000   NA
 3062036 3062037 VC274080_0313 VC274080_0312     FALSE 0.197 175.000 0.239 NA   NA
 3062037 3062038 VC274080_0312 VC274080_0311     TRUE 0.997 3.000 1.000 0.047 Y NA
 3062038 3062039 VC274080_0311 VC274080_0310     TRUE 0.949 104.000 0.848 0.047 Y NA
 3062039 3062040 VC274080_0310 VC274080_0309     TRUE 0.895 20.000 0.408 1.000   NA
 3062040 3062041 VC274080_0309 VC274080_0308     FALSE 0.010 292.000 0.000 NA   NA
 3062041 3062042 VC274080_0308 VC274080_0307     FALSE 0.020 235.000 0.000 NA   NA
 3062042 3062043 VC274080_0307 VC274080_0306     FALSE 0.238 62.000 0.000 NA   NA
 3062043 3062044 VC274080_0306 VC274080_0305     FALSE 0.215 71.000 0.000 NA   NA
 3062044 3062045 VC274080_0305 VC274080_0304     FALSE 0.238 62.000 0.000 NA   NA
 3062045 3062046 VC274080_0304 VC274080_0303     FALSE 0.365 36.000 0.000 NA   NA
 3062049 3062050 VC274080_0541 VC274080_0540   maf TRUE 0.856 26.000 0.417 NA   NA
 3062050 3062051 VC274080_0540 VC274080_0539 maf mreD TRUE 0.840 -57.000 0.206 NA N NA
 3062051 3062052 VC274080_0539 VC274080_0538 mreD mreC TRUE 0.996 -13.000 0.550 0.002 Y NA
 3062052 3062053 VC274080_0538 VC274080_0537 mreC mreB TRUE 0.744 57.000 0.689 1.000 N NA
 3062053 3062054 VC274080_0537 VC274080_0536 mreB   FALSE 0.032 168.000 0.009 NA   NA
 3062054 3062055 VC274080_0536 VC274080_0535     TRUE 0.882 -7.000 0.143 NA   NA
 3062055 3062056 VC274080_0535 VC274080_0534     TRUE 0.740 -34.000 0.097 NA   NA
 3062056 3062057 VC274080_0534 VC274080_0533   mshD TRUE 0.985 0.000 0.871 NA   NA
 3062057 3062058 VC274080_0533 VC274080_0532 mshD mshC TRUE 0.970 5.000 0.433 NA   NA
 3062058 3062059 VC274080_0532 VC274080_0531 mshC mshA FALSE 0.438 37.000 0.111 NA   NA
 3062059 3062060 VC274080_0531 VC274080_0530 mshA mshB TRUE 0.762 26.000 0.231 NA   NA
 3062060 3062061 VC274080_0530 VC274080_0529 mshB mshF FALSE 0.500 81.000 0.231 NA   NA
 3062061 3062062 VC274080_0529 VC274080_0528 mshF mshG TRUE 0.676 3.000 0.039 NA   NA
 3062062 3062063 VC274080_0528 VC274080_0527 mshG mshE TRUE 0.990 9.000 0.740 1.000 Y NA
 3062063 3062064 VC274080_0527 VC274080_0526 mshE mshN TRUE 0.947 -10.000 0.328 1.000   NA
 3062064 3062065 VC274080_0526 VC274080_0525 mshN mshM TRUE 0.941 -21.000 0.338 1.000   NA
 3062065 3062066 VC274080_0525 VC274080_0524 mshM mshL TRUE 0.992 5.000 0.846 1.000 Y NA
 3062066 3062067 VC274080_0524 VC274080_0523 mshL mshK TRUE 0.918 15.000 0.356 NA   NA
 3062067 3062068 VC274080_0523 VC274080_0522 mshK mshJ TRUE 0.956 -7.000 0.344 NA   NA
 3062068 3062069 VC274080_0522 VC274080_0521 mshJ mshI TRUE 0.794 -3.000 0.082 NA   NA
 3062069 3062070 VC274080_0521 VC274080_0520 mshI mshH FALSE 0.103 13.000 0.051 NA N NA
 3062070 3062071 VC274080_0520 VC274080_0519 mshH ssb FALSE 0.034 115.000 0.071 1.000 N NA
 3062072 3062073 VC274080_0518 VC274080_0517   galU FALSE 0.445 170.000 0.857 1.000 N NA
 3062073 3062074 VC274080_0517 VC274080_0516 galU uvrA FALSE 0.005 156.000 0.013 1.000 N NA
 3062074 3062075 VC274080_0516 VC274080_0515 uvrA   FALSE 0.017 56.000 0.013 1.000 N NA
 3062082 3062083 VC274080_2434 VC274080_2433     FALSE 0.482 32.000 0.110 NA   NA
 3062083 3062084 VC274080_2433 VC274080_2432   pilD TRUE 0.789 -3.000 0.122 1.000 N NA
 3062084 3062085 VC274080_2432 VC274080_2431 pilD pilC TRUE 0.850 58.000 0.454 1.000 Y NA
 3062085 3062086 VC274080_2431 VC274080_2430 pilC pilB TRUE 0.956 43.000 0.362 0.012 Y NA
 3062086 3062087 VC274080_2430 VC274080_2429 pilB pilA TRUE 0.992 0.000 0.169 0.012 Y NA
 3062087 3062088 VC274080_2429 VC274080_2428 pilA nadC FALSE 0.006 245.000 0.000 1.000 N NA
 3062091 3062092 VC274080_2425 VC274080_2424 xerD dsbC FALSE 0.252 17.000 0.079 1.000 N NA
 3062092 3062093 VC274080_2424 VC274080_2423 dsbC recJ FALSE 0.099 44.000 0.082 1.000 N NA
 3062095 3062096 VC274080_2421 VC274080_2420 pdhR aceE FALSE 0.552 50.000 0.276 1.000 N NA
 3062096 3062097 VC274080_2420 VC274080_2419 aceE aceF TRUE 0.979 1.000 0.220 1.000 Y NA
 3062097 3062098 VC274080_2419 VC274080_2418 aceF lpdA FALSE 0.177 268.000 0.463 1.000 Y NA
 3062098 3062099 VC274080_2418 VC274080_2417 lpdA   FALSE 0.001 772.000 0.000 1.000 N NA
 3062099 3062100 VC274080_2417 VC274080_2416   ftsL TRUE 0.899 10.000 0.227 1.000 N NA
 3062100 3062101 VC274080_2416 VC274080_2415 ftsL ftsI TRUE 0.877 -3.000 0.173 1.000 N NA
 3062101 3062102 VC274080_2415 VC274080_2414 ftsI murE TRUE 0.914 -34.000 0.083 1.000 Y NA
 3062102 3062103 VC274080_2414 VC274080_2413 murE murF TRUE 0.997 -3.000 0.569 0.002 Y NA
 3062103 3062104 VC274080_2413 VC274080_2412 murF mraY TRUE 0.995 -3.000 0.309 0.004 Y NA
 3062104 3062105 VC274080_2412 VC274080_2411 mraY murD TRUE 0.988 24.000 0.647 0.004 Y NA
 3062105 3062106 VC274080_2411 VC274080_2410 murD ftsW TRUE 0.967 17.000 0.297 0.003 N NA
 3062106 3062107 VC274080_2410 VC274080_2409 ftsW murG TRUE 0.959 -16.000 0.647 1.000 N NA
 3062107 3062108 VC274080_2409 VC274080_2408 murG murC TRUE 0.960 14.000 0.283 1.000 Y NA
 3062108 3062109 VC274080_2408 VC274080_2407 murC ftsQ FALSE 0.256 182.000 0.134 NA Y NA
 3062109 3062110 VC274080_2407 VC274080_2406 ftsQ ftsA TRUE 0.948 -7.000 0.389 NA N NA
 3062110 3062111 VC274080_2406 VC274080_2405 ftsA   TRUE 0.834 31.000 0.460 1.000   NA
 3062113 3062114 VC274080_0060 VC274080_0061 rrfD   FALSE 0.496 24.000 0.000 NA   NA
 3062114 3062115 VC274080_0061 VC274080_0062     FALSE 0.419 30.000 0.000 NA   NA
 3062115 3062116 VC274080_0062 VC274080_0063   crcB FALSE 0.021 232.000 0.000 NA   NA
 3062116 3062117 VC274080_0063 VC274080_0064 crcB thiC FALSE 0.006 252.000 0.000 NA N NA
 3062117 3062118 VC274080_0064 VC274080_0065 thiC thiE TRUE 0.989 4.000 0.063 0.003 Y NA
 3062118 3062119 VC274080_0065 VC274080_0066 thiE thiF TRUE 0.970 -13.000 0.242 1.000 Y NA
 3062119 3062120 VC274080_0066 VC274080_0067 thiF thiS TRUE 0.978 -57.000 0.548 1.000 Y NA
 3062120 3062121 VC274080_0067 VC274080_0068 thiS thiG TRUE 0.950 6.000 0.087 1.000 Y NA
 3062121 3062122 VC274080_0068 VC274080_0069 thiG thiH TRUE 0.995 -3.000 0.277 0.003 Y NA
 3062123 3062124 VC274080_0070 VC274080_0071     FALSE 0.030 133.000 0.074 1.000 N NA
 3062125 3062126 VC274080_0072 VC274080_0073     TRUE 0.689 122.000 0.625 NA   NA
 3062128 3062129 VC274080_0075 VC274080_0076     TRUE 0.601 -33.000 0.055 NA   NA
 3062129 3062130 VC274080_0076 VC274080_0077     FALSE 0.112 118.000 0.051 NA   NA
 3062131 3062132 VC274080_0078 VC274080_0079 madN uspA FALSE 0.204 57.000 0.076 1.000   NA
 3062133 3062134 VC274080_0080 VC274080_0081 ftn   FALSE 0.509 76.000 0.235 NA   NA
 3062134 3062135 VC274080_0081 VC274080_0083     FALSE 0.069 133.000 0.028 NA   NA
 3062137 3062138 VC274080_0084 VC274080_0085   ubiE FALSE 0.177 45.000 0.047 NA   NA
 3062138 3062139 VC274080_0085 VC274080_0086 ubiE   TRUE 0.887 9.000 0.145 1.000   NA
 3062139 3062140 VC274080_0086 VC274080_0087     TRUE 0.968 -3.000 0.432 1.000   NA
 3062140 3062141 VC274080_0087 VC274080_0088   tatA-1 FALSE 0.120 60.000 0.044 1.000   NA
 3062141 3062142 VC274080_0088 VC274080_0089 tatA-1   TRUE 0.994 4.000 0.246 0.006 Y NA
 3062142 3062143 VC274080_0089 VC274080_0090     TRUE 0.779 89.000 0.333 1.000 Y NA
 3062143 3062144 VC274080_0090 VC274080_0091   yhjA FALSE 0.003 312.000 0.000 1.000 N NA
 3062145 3062146 VC274080_0092 VC274080_0093 dinF   FALSE 0.014 71.000 0.039 NA N NA
 3062146 3062147 VC274080_0093 VC274080_0094   lexA FALSE 0.200 28.000 0.083 NA N NA
 3062149 3062150 VC274080_0096 VC274080_0097 ubiA ubiC TRUE 0.952 1.000 0.248 NA   NA
 3062151 3062152 VC274080_1016 VC274080_1015   lipB FALSE 0.170 179.000 0.219 NA   NA
 3062152 3062153 VC274080_1015 VC274080_1014 lipB lipA TRUE 0.996 -7.000 0.319 0.001 Y NA
 3062153 3062154 VC274080_1014 VC274080_1013 lipA   FALSE 0.032 169.000 0.008 NA   NA
 3062157 3062158 VC274080_1010 VC274080_1009     TRUE 0.954 -21.000 0.455 NA   NA
 3062158 3062159 VC274080_1009 VC274080_1008     TRUE 0.928 -3.000 0.194 1.000   NA
 3062159 3062160 VC274080_1008 VC274080_1007     TRUE 0.950 25.000 0.581 1.000 Y NA
 3062160 3062161 VC274080_1007 VC274080_1006     TRUE 0.972 4.000 0.474 1.000   NA
 3062161 3062162 VC274080_1006 VC274080_1005     TRUE 0.639 71.000 0.395 1.000   NA
 3062163 3062164 VC274080_1004 VC274080_1003     FALSE 0.070 176.000 0.103 NA   NA
 3062167 3062168 VC274080_1000 VC274080_0999   cpsF FALSE 0.027 196.000 0.065 NA   NA
 3062168 3062169 VC274080_0999 VC274080_0998 cpsF   TRUE 0.829 -10.000 0.113 NA   NA
 3062169 3062170 VC274080_0998 VC274080_0997     FALSE 0.256 36.000 0.056 NA   NA
 3062170 3062171 VC274080_0997 VC274080_0996     FALSE 0.579 -24.000 0.101 1.000 N NA
 3062171 3062172 VC274080_0996 VC274080_0995     TRUE 0.880 0.000 0.167 1.000 N NA
 3062172 3062173 VC274080_0995 VC274080_0994     TRUE 0.977 11.000 0.857 NA   NA
 3062173 3062174 VC274080_0994 VC274080_0993     TRUE 0.975 -3.000 0.571 NA   NA
 3062174 3062175 VC274080_0993 VC274080_0992     TRUE 0.976 -3.000 0.600 1.000   NA
 3062175 3062176 VC274080_0992 VC274080_0991     TRUE 0.963 -3.000 0.500 1.000 N NA
 3062176 3062177 VC274080_0991 VC274080_0990   epsD TRUE 0.947 -3.000 0.333 1.000 N NA
 3062177 3062178 VC274080_0990 VC274080_0989 epsD wecB TRUE 0.959 20.000 0.500 1.000 Y NA
 3062178 3062179 VC274080_0989 VC274080_0988 wecB   FALSE 0.003 313.000 0.000 1.000 N NA
 3062179 3062180 VC274080_0988 VC274080_0987     FALSE 0.001 427.000 0.000 NA N NA
 3062180 3062181 VC274080_0987 VC274080_0986     TRUE 0.801 0.000 0.078 NA   NA
 3062182 3062183 VC274080_0146 VC274080_0145 ftsX ftsE TRUE 0.951 -10.000 0.121 NA Y NA
 3062183 3062184 VC274080_0145 VC274080_0144 ftsE ftsY TRUE 0.833 22.000 0.117 0.095 N NA
 3062185 3062186 VC274080_0143 VC274080_0142     TRUE 0.741 -3.000 0.063 NA   NA
 3062187 3062188 VC274080_0141 VC274080_0140     FALSE 0.509 117.000 0.267 NA   NA
 3062188 3062189 VC274080_0140 VC274080_0139     FALSE 0.003 503.000 0.000 NA   NA
 3062190 3062191 VC274080_0138 VC274080_0137     FALSE 0.070 170.000 0.000 NA   NA
 3062191 3062192 VC274080_0137 VC274080_0136     FALSE 0.276 53.000 0.091 NA   NA
 3062193 3062194 VC274080_0135 VC274080_0134     FALSE 0.365 20.000 0.094 NA N NA
 3062195 3062196 VC274080_0133 VC274080_0132 lypA   FALSE 0.222 115.000 0.103 1.000   NA
 3062196 3062197 VC274080_0132 VC274080_0131     FALSE 0.011 284.000 0.000 NA   NA
 3062197 3062198 VC274080_0131 VC274080_0130     TRUE 0.924 -3.000 0.182 NA   NA
 3062199 3062200 VC274080_0129 VC274080_0128     FALSE 0.191 110.000 0.000 1.000   NA
 3062200 3062201 VC274080_0128 VC274080_0127   xerC TRUE 0.967 3.000 0.367 1.000   NA
 3062201 3062202 VC274080_0127 VC274080_0126 xerC   TRUE 0.968 -31.000 0.714 NA   NA
 3062202 3062203 VC274080_0126 VC274080_0125   dapF TRUE 0.844 14.000 0.175 NA   NA
 3062203 3062204 VC274080_0125 VC274080_0124 dapF lysA TRUE 0.985 12.000 0.104 0.002 Y NA
 3062204 3062205 VC274080_0124 VC274080_0123 lysA lppL FALSE 0.219 33.000 0.007 NA   NA
 3062208 3062209 VC274080_0120 VC274080_0119   hemC FALSE 0.026 177.000 0.004 NA   NA
 3062209 3062210 VC274080_0119 VC274080_0118 hemC hemD TRUE 0.945 46.000 0.205 0.002 Y NA
 3062210 3062211 VC274080_0118 VC274080_0117 hemD   TRUE 0.985 -16.000 0.600 1.000 Y NA
 3062211 3062212 VC274080_0117 VC274080_0116   hemY TRUE 0.992 -3.000 0.765 1.000 Y NA
 3062213 3062214 VC274080_0115 VC274080_0114 hemN   FALSE 0.517 85.000 0.244 NA   NA
 3062214 3062215 VC274080_0114 VC274080_0113     TRUE 0.979 7.000 0.679 NA  <