MicrobesOnline Operon Predictions for Yersinia pestis CA88-4125

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 4586327 4586328 YPE_0001 YPE_0002     FALSE 0.265 108.000 0.000 NA   NA
 4586329 4586330 YPE_0003 YPE_0004   pssA TRUE 0.599 62.000 0.089 NA   NA
 4586330 4586331 YPE_0004 YPE_0005 pssA yfiQ TRUE 0.458 173.000 0.121 0.054 N NA
 4586331 4586332 YPE_0005 YPE_0006 yfiQ   TRUE 0.871 43.000 0.222 NA   NA
 4586332 4586333 YPE_0006 YPE_0007   trxC FALSE 0.334 170.000 0.084 NA   NA
 4586335 4586336 YPE_0009 YPE_0010 emrB emrA TRUE 0.977 39.000 0.875 1.000 N NA
 4586336 4586337 YPE_0010 YPE_0011 emrA mprA FALSE 0.048 384.000 0.107 1.000 N NA
 4586337 4586338 YPE_0011 YPE_0012 mprA   FALSE 0.283 172.000 0.065 NA   NA
 4586338 4586339 YPE_0012 YPE_0013     TRUE 0.998 -3.000 0.915 NA   NA
 4586339 4586340 YPE_0013 YPE_0014     FALSE 0.159 160.000 0.060 NA N NA
 4586340 4586341 YPE_0014 YPE_0015     FALSE 0.107 228.000 0.000 NA   NA
 4586341 4586342 YPE_0015 YPE_0016     TRUE 0.901 29.000 0.203 NA   NA
 4586342 4586343 YPE_0016 YPE_0017     TRUE 0.975 -3.000 0.122 NA   NA
 4586344 4586345 YPE_0018 YPE_0019     TRUE 0.912 2.000 0.000 NA   NA
 4586345 4586346 YPE_0019 YPE_0020     FALSE 0.261 111.000 0.000 NA   NA
 4586346 4586347 YPE_0020 YPE_0021     TRUE 0.998 13.000 0.765 0.074 Y NA
 4586347 4586348 YPE_0021 YPE_0022     TRUE 0.999 -3.000 0.433 0.021 Y NA
 4586348 4586349 YPE_0022 YPE_0023     TRUE 0.998 -19.000 0.532 1.000 Y NA
 4586349 4586350 YPE_0023 YPE_0025     TRUE 0.614 32.000 0.000 NA   NA
 4586352 4586353 YPE_0026 YPE_0027     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4586354 4586355 YPE_0029 YPE_0030   hxuB FALSE 0.005 1089.000 0.000 NA N NA
 4586355 4586356 YPE_0030 YPE_0031 hxuB hmwA TRUE 0.850 41.000 0.188 NA   NA
 4586356 4586357 YPE_0031 YPE_0032 hmwA hmwC TRUE 0.464 155.000 0.125 1.000   NA
 4586357 4586358 YPE_0032 YPE_0033 hmwC   TRUE 0.918 2.000 0.000 1.000   NA
 4586360 4586361 YPE_0035 YPE_0036 gmhA   TRUE 0.517 203.000 0.229 1.000   NA
 4586363 4586364 YPE_0038 YPE_0039 nqrA nqrB TRUE 0.999 4.000 0.854 0.002 Y NA
 4586364 4586365 YPE_0039 YPE_0040 nqrB nqrC TRUE 0.999 -10.000 0.603 0.002 Y NA
 4586365 4586366 YPE_0040 YPE_0041 nqrC nqrD TRUE 0.999 -7.000 0.312 0.002 Y NA
 4586366 4586367 YPE_0041 YPE_0042 nqrD nqrE TRUE 0.995 7.000 0.188 0.002 Y NA
 4586367 4586368 YPE_0042 YPE_0043 nqrE nqrF TRUE 0.997 16.000 0.551 0.002 Y NA
 4586368 4586369 YPE_0043 YPE_0044 nqrF apbE TRUE 0.942 41.000 0.519 1.000 N NA
 4586369 4586370 YPE_0044 YPE_0045 apbE   TRUE 0.983 13.000 0.481 NA   NA
 4586374 4586375 YPE_0049 YPE_0050     FALSE 0.015 722.000 0.000 NA   NA
 4586376 4586377 YPE_0051 YPE_0052     FALSE 0.155 197.000 0.000 NA   NA
 4586378 4586379 YPE_0053 YPE_0054 gpt   TRUE 0.477 127.000 0.120 NA   NA
 4586379 4586380 YPE_0054 YPE_0055   crl TRUE 0.628 60.000 0.095 NA   NA
 4586380 4586381 YPE_0055 YPE_0056 crl proB TRUE 0.629 177.000 0.262 NA   NA
 4586381 4586382 YPE_0056 YPE_0057 proB proA TRUE 0.985 10.000 0.026 0.001 Y NA
 4586382 4586383 YPE_0057 YPE_0058 proA   FALSE 0.015 328.000 0.000 NA N NA
 4586383 4586384 YPE_0058 YPE_0059     FALSE 0.226 183.000 0.053 NA   NA
 4586384 4586385 YPE_0059 YPE_0060     FALSE 0.087 246.000 0.000 NA   NA
 4586387 4586388 YPE_0062 YPE_0063   aroL FALSE 0.035 247.000 0.000 1.000 N NA
 4586388 4586389 YPE_0063 YPE_0064 aroL   FALSE 0.076 256.000 0.000 NA   NA
 4586389 4586390 YPE_0064 YPE_0065     FALSE 0.403 64.000 0.000 NA   NA
 4586392 4586393 YPE_0067 YPE_0068     FALSE 0.006 732.000 0.000 1.000 N NA
 4586393 4586394 YPE_0068 YPE_0069     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4586396 4586397 YPE_0071 YPE_0072 phoB phoR TRUE 0.993 25.000 0.453 0.088 Y NA
 4586397 4586398 YPE_0072 YPE_0073 phoR   TRUE 0.870 22.000 0.168 1.000 N NA
 4586398 4586399 YPE_0073 YPE_0074   brnQ FALSE 0.009 474.000 0.000 1.000 N NA
 4586399 4586400 YPE_0074 YPE_0075 brnQ proY TRUE 0.951 76.000 0.261 0.089 Y NA
 4586400 4586401 YPE_0075 YPE_0076 proY malZ FALSE 0.034 561.000 0.123 1.000 N NA
 4586401 4586402 YPE_0076 YPE_0077 malZ   FALSE 0.224 155.000 0.031 1.000   NA
 4586405 4586406 YPE_0081 YPE_0082     TRUE 0.664 26.000 0.000 NA   NA
 4586407 4586408 YPE_0083 YPE_0084 tnp ahpC FALSE 0.052 215.000 0.000 1.000 N NA
 4586408 4586409 YPE_0084 YPE_0085 ahpC acpH FALSE 0.045 299.000 0.014 1.000   NA
 4586410 4586411 YPE_0086 YPE_0087 queA tgt TRUE 0.970 93.000 0.360 0.001 Y NA
 4586411 4586412 YPE_0087 YPE_0088 tgt   TRUE 0.701 112.000 0.325 NA N NA
 4586412 4586413 YPE_0088 YPE_0089   secD TRUE 0.933 28.000 0.045 NA Y NA
 4586413 4586414 YPE_0089 YPE_0090 secD secF TRUE 0.994 11.000 0.206 0.001 Y NA
 4586414 4586415 YPE_0090 YPE_0091 secF tnp FALSE 0.057 207.000 0.000 1.000 N NA
 4586415 4586416 YPE_0091 YPE_0092 tnp   FALSE 0.054 298.000 0.000 NA   NA
 4586416 4586417 YPE_0092 YPE_0093     TRUE 0.609 33.000 0.000 NA   NA
 4586417 4586418 YPE_0093 YPE_0094     FALSE 0.353 71.000 0.000 NA   NA
 4586418 4586419 YPE_0094 YPE_0095   ribD TRUE 0.606 150.000 0.277 NA N NA
 4586419 4586420 YPE_0095 YPE_0096 ribD ribH TRUE 0.818 136.000 0.034 0.002 Y NA
 4586420 4586421 YPE_0096 YPE_0097 ribH nusB TRUE 0.950 21.000 0.347 1.000 N NA
 4586421 4586422 YPE_0097 YPE_0098 nusB thiL FALSE 0.308 241.000 0.225 1.000 N NA
 4586422 4586423 YPE_0098 YPE_0099 thiL pgpA TRUE 0.976 -7.000 0.206 1.000 N NA
 4586423 4586424 YPE_0099 YPE_0100 pgpA tnp FALSE 0.053 214.000 0.000 1.000 N NA
 4586425 4586426 YPE_0101 YPE_0102 dxs ispA TRUE 0.710 156.000 0.060 1.000 Y NA
 4586426 4586427 YPE_0102 YPE_0103 ispA xseB TRUE 0.721 5.000 0.035 1.000 N NA
 4586428 4586429 YPE_0104 YPE_0105   thiI FALSE 0.282 98.000 0.000 NA   NA
 4586430 4586431 YPE_0106 YPE_0107 yajL apbA TRUE 0.969 -37.000 0.155 NA   NA
 4586433 4586434 YPE_0109 YPE_0110   cyoE FALSE 0.039 478.000 0.061 0.089 N NA
 4586434 4586435 YPE_0110 YPE_0111 cyoE cyoD TRUE 0.929 11.000 0.118 0.089 N NA
 4586435 4586436 YPE_0111 YPE_0112 cyoD cyoC TRUE 0.999 0.000 0.485 0.047 Y NA
 4586436 4586437 YPE_0112 YPE_0113 cyoC cyoB TRUE 0.999 -10.000 0.697 0.047 Y NA
 4586437 4586438 YPE_0113 YPE_0114 cyoB cyoA TRUE 0.996 5.000 0.204 0.007 Y NA
 4586438 4586439 YPE_0114 YPE_0115 cyoA   FALSE 0.035 370.000 0.000 NA   NA
 4586439 4586440 YPE_0115 YPE_0116   ampG FALSE 0.057 292.000 0.000 NA   NA
 4586440 4586441 YPE_0116 YPE_0117 ampG   TRUE 0.625 118.000 0.256 NA N NA
 4586442 4586443 YPE_0118 YPE_0119 bolA   FALSE 0.178 141.000 0.011 NA   NA
 4586443 4586444 YPE_0119 YPE_0120   tig FALSE 0.251 73.000 0.002 NA   NA
 4586444 4586445 YPE_0120 YPE_0121 tig clpP TRUE 0.490 462.000 0.351 1.000 Y NA
 4586445 4586446 YPE_0121 YPE_0122 clpP clpX TRUE 0.916 206.000 0.352 0.003 Y NA
 4586446 4586447 YPE_0122 YPE_0123 clpX lon TRUE 0.797 195.000 0.201 1.000 Y NA
 4586447 4586448 YPE_0123 YPE_0124 lon hupB FALSE 0.012 218.000 0.005 NA N NA
 4586448 4586449 YPE_0124 YPE_0125 hupB ppiD FALSE 0.026 301.000 0.046 NA N NA
 4586449 4586450 YPE_0125 YPE_0126 ppiD   FALSE 0.106 140.000 0.000 1.000 N NA
 4586450 4586451 YPE_0126 YPE_0127     FALSE 0.041 354.000 0.000 1.000   NA
 4586452 4586453 YPE_0128 YPE_0129 queC   FALSE 0.062 265.000 0.019 1.000   NA
 4586456 4586457 YPE_0132 YPE_0133   mdlA TRUE 0.536 102.000 0.179 1.000 N NA
 4586457 4586458 YPE_0133 YPE_0134 mdlA mdlB TRUE 1.000 -7.000 0.911 0.007 Y NA
 4586458 4586459 YPE_0134 YPE_0135 mdlB glnK FALSE 0.009 410.000 0.028 1.000 N NA
 4586459 4586460 YPE_0135 YPE_0136 glnK   TRUE 0.795 34.000 0.156 1.000 N NA
 4586465 4586466 YPE_0141 YPE_0142 hha   TRUE 0.650 49.000 0.080 NA   NA
 4586466 4586467 YPE_0142 YPE_0143     TRUE 0.771 159.000 0.400 NA   NA
 4586467 4586468 YPE_0143 YPE_0144   rpmJ2 FALSE 0.015 874.000 0.000 1.000   NA
 4586468 4586469 YPE_0144 YPE_0145 rpmJ2   TRUE 0.926 16.000 0.083 0.015   NA
 4586469 4586470 YPE_0145 YPE_0146   acrB FALSE 0.033 186.000 0.008 1.000 N NA
 4586470 4586471 YPE_0146 YPE_0147 acrB acrA TRUE 0.973 17.000 0.500 1.000 N NA
 4586472 4586473 YPE_0148 YPE_0149 acrR   TRUE 0.778 13.000 0.075 NA N NA
 4586473 4586474 YPE_0149 YPE_0150     FALSE 0.059 240.000 0.054 NA N NA
 4586475 4586476 YPE_0151 YPE_0152   priC TRUE 0.797 171.000 0.474 NA   NA
 4586477 4586479 YPE_0153 YPE_0154   apt FALSE 0.012 2305.000 0.000 NA   NA
 4586479 4586480 YPE_0154 YPE_0155 apt dnaX FALSE 0.020 656.000 0.088 1.000 N NA
 4586480 4586481 YPE_0155 YPE_0156 dnaX   TRUE 0.916 56.000 0.411 NA   NA
 4586481 4586482 YPE_0156 YPE_0157   recR TRUE 0.996 0.000 0.604 NA   NA
 4586482 4586483 YPE_0157 YPE_0158 recR htpG FALSE 0.059 192.000 0.028 1.000 N NA
 4586483 4586484 YPE_0158 YPE_0159 htpG adk FALSE 0.047 227.000 0.035 1.000 N NA
 4586484 4586485 YPE_0159 YPE_0160 adk hemH FALSE 0.065 90.000 0.008 1.000 N NA
 4586485 4586486 YPE_0160 YPE_0161 hemH ddhD FALSE 0.007 598.000 0.000 1.000 N NA
 4586486 4586487 YPE_0161 YPE_0162 ddhD ddhA TRUE 0.462 26.000 0.038 1.000 N NA
 4586487 4586488 YPE_0162 YPE_0163 ddhA ddhC FALSE 0.102 1097.000 0.051 1.000 Y NA
 4586488 4586489 YPE_0163 YPE_0164 ddhC prt TRUE 0.942 37.000 0.000 0.020 Y NA
 4586489 4586490 YPE_0164 YPE_0165 prt wbyH TRUE 0.783 1.000 0.000 NA N NA
 4586490 4586491 YPE_0165 YPE_0166 wbyH wzx FALSE 0.335 74.000 0.000 NA   NA
 4586491 4586492 YPE_0166 YPE_0168 wzx wbyI TRUE 0.811 11.000 0.000 NA   NA
 4586492 4586494 YPE_0168 YPE_0169 wbyI wbyJ FALSE 0.199 172.000 0.000 NA   NA
 4586494 4586495 YPE_0169 YPE_0171 wbyJ wzy TRUE 0.934 -3.000 0.000 NA   NA
 4586495 4586497 YPE_0171 YPE_0172 wzy wbyK FALSE 0.083 249.000 0.000 NA   NA
 4586497 4586498 YPE_0172 YPE_0174 wbyK gmd TRUE 0.752 16.000 0.000 NA   NA
 4586498 4586500 YPE_0174 YPE_0176 gmd fcl TRUE 0.854 6.000 0.000 NA   NA
 4586500 4586502 YPE_0176 YPE_0177 fcl manC FALSE 0.146 202.000 0.000 NA   NA
 4586502 4586503 YPE_0177 YPE_0178 manC wbyL TRUE 0.988 3.000 0.073 NA Y NA
 4586503 4586504 YPE_0178 YPE_0179 wbyL manB TRUE 0.769 5.000 0.049 NA N NA
 4586504 4586505 YPE_0179 YPE_0180 manB wzz FALSE 0.285 48.000 0.000 1.000 N NA
 4586505 4586506 YPE_0180 YPE_0181 wzz gsk FALSE 0.060 204.000 0.000 1.000 N NA
 4586507 4586508 YPE_0182 YPE_0183 rosB rosA TRUE 0.544 235.000 0.000 0.088 Y NA
 4586511 4586512 YPE_0185 YPE_0186     FALSE 0.057 292.000 0.000 NA   NA
 4586514 4586515 YPE_0188 YPE_0189   copA FALSE 0.016 521.000 0.018 NA   NA
 4586517 4586518 YPE_0191 YPE_0192     TRUE 0.997 3.000 0.313 NA Y NA
 4586518 4586519 YPE_0192 YPE_0193     TRUE 0.644 195.000 0.075 NA Y NA
 4586519 4586520 YPE_0193 YPE_0194     TRUE 0.582 77.000 0.118 1.000   NA
 4586520 4586521 YPE_0194 YPE_0195   tesA FALSE 0.056 387.000 0.072 1.000   NA
 4586522 4586523 YPE_0196 YPE_0197     TRUE 0.999 -3.000 0.535 NA Y NA
 4586524 4586525 YPE_0198 YPE_0199 purK purE TRUE 0.998 -3.000 0.136 0.001 Y NA
 4586525 4586526 YPE_0199 YPE_0200 purE lpxH FALSE 0.047 296.000 0.016 1.000   NA
 4586526 4586527 YPE_0200 YPE_0201 lpxH ppiB TRUE 0.966 11.000 0.237 1.000   NA
 4586528 4586529 YPE_0202 YPE_0203 cysS tnp FALSE 0.016 347.000 0.000 1.000 N NA
 4586529 4586530 YPE_0203 YPE_0204 tnp   TRUE 0.630 176.000 0.000 1.000 Y NA
 4586531 4586532 YPE_0205 YPE_0206     TRUE 0.728 107.000 0.259 1.000   NA
 4586535 4586536 YPE_0209 YPE_0210     TRUE 0.882 4.000 0.000 NA   NA
 4586537 4586538 YPE_0211 YPE_0212 bcp gcvR TRUE 0.946 0.000 0.102 1.000 N NA
 4586539 4586540 YPE_0213 YPE_0214 dapA nlpB TRUE 0.949 18.000 0.032 NA Y NA
 4586540 4586541 YPE_0214 YPE_0215 nlpB tnp FALSE 0.073 175.000 0.000 NA N NA
 4586541 4586542 YPE_0215 YPE_0216 tnp purC FALSE 0.102 148.000 0.000 1.000 N NA
 4586542 4586543 YPE_0216 YPE_0217 purC   FALSE 0.092 219.000 0.004 1.000   NA
 4586543 4586544 YPE_0217 YPE_0218     FALSE 0.243 94.000 0.018 NA   NA
 4586544 4586545 YPE_0218 YPE_0219     TRUE 0.960 2.000 0.100 NA   NA
 4586546 4586547 YPE_0220 YPE_0221     TRUE 0.646 68.000 0.130 NA   NA
 4586547 4586548 YPE_0221 YPE_0222   dapE TRUE 0.986 -3.000 0.163 0.027 N NA
 4586548 4586549 YPE_0222 YPE_0223 dapE   TRUE 0.984 2.000 0.292 1.000 N NA
 4586549 4586550 YPE_0223 YPE_0224     FALSE 0.171 160.000 0.006 1.000   NA
 4586551 4586552 YPE_0225 YPE_0226     TRUE 0.983 95.000 0.688 0.073 Y NA
 4586552 4586553 YPE_0226 YPE_0227     TRUE 0.996 -7.000 0.585 0.073 N NA
 4586553 4586554 YPE_0227 YPE_0228     FALSE 0.009 478.000 0.000 1.000 N NA
 4586554 4586555 YPE_0228 YPE_0229     TRUE 0.948 58.000 0.600 1.000   NA
 4586556 4586557 YPE_0230 YPE_0231     FALSE 0.059 289.000 0.000 NA   NA
 4586557 4586558 YPE_0231 YPE_0232     FALSE 0.103 231.000 0.000 NA   NA
 4586561 4586562 YPE_0235 YPE_0236 napF napD TRUE 0.982 -10.000 0.209 1.000   NA
 4586562 4586563 YPE_0236 YPE_0237 napD napA TRUE 0.999 -3.000 0.875 0.002 N NA
 4586563 4586564 YPE_0237 YPE_0238 napA napB TRUE 0.851 95.000 0.031 0.002 Y NA
 4586564 4586565 YPE_0238 YPE_0239 napB napC TRUE 0.992 25.000 0.490 1.000 Y NA
 4586565 4586566 YPE_0239 YPE_0240 napC   FALSE 0.168 184.000 0.070 1.000 N NA
 4586566 4586567 YPE_0240 YPE_0241   maeB FALSE 0.280 196.000 0.047 0.006 N NA
 4586568 4586569 YPE_0242 YPE_0243   hemF TRUE 0.903 0.000 0.016 NA   NA
 4586573 4586574 YPE_0247 YPE_0248     FALSE 0.022 487.000 0.000 NA   NA
 4586575 4586576 YPE_0249 YPE_0250     TRUE 0.697 178.000 0.333 NA   NA
 4586577 4586578 YPE_0251 YPE_0252   nanE TRUE 0.452 63.000 0.087 1.000 N NA
 4586578 4586579 YPE_0252 YPE_0253 nanE   FALSE 0.136 206.000 0.000 NA   NA
 4586581 4586582 YPE_0254 YPE_0255     TRUE 0.862 97.000 0.154 NA Y NA
 4586582 4586583 YPE_0255 YPE_0256     TRUE 0.552 40.000 0.000 NA   NA
 4586583 4586584 YPE_0256 YPE_0257     TRUE 0.934 -3.000 0.000 NA   NA
 4586584 4586585 YPE_0257 YPE_0258     FALSE 0.007 605.000 0.000 1.000 N NA
 4586585 4586586 YPE_0258 YPE_0259   cysP FALSE 0.019 315.000 0.000 1.000 N NA
 4586586 4586587 YPE_0259 YPE_0260 cysP cysU TRUE 0.996 0.000 0.479 0.002 N NA
 4586587 4586588 YPE_0260 YPE_0261 cysU cysW TRUE 0.997 0.000 0.583 0.001 N NA
 4586588 4586589 YPE_0261 YPE_0262 cysW cysA TRUE 0.995 -10.000 0.180 1.000 Y NA
 4586589 4586590 YPE_0262 YPE_0263 cysA cysM FALSE 0.127 171.000 0.049 1.000 N NA
 4586590 4586591 YPE_0263 YPE_0264 cysM   FALSE 0.088 245.000 0.000 NA   NA
 4586592 4586593 YPE_0265 YPE_0266     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4586593 4586594 YPE_0266 YPE_0267     FALSE 0.101 233.000 0.000 NA   NA
 4586595 4586596 YPE_0268 YPE_0269     TRUE 0.601 34.000 0.000 NA   NA
 4586596 4586598 YPE_0269 YPE_0270     FALSE 0.229 143.000 0.000 NA   NA
 4586598 4586599 YPE_0270 YPE_0271     TRUE 0.993 -3.000 0.357 NA   NA
 4586599 4586600 YPE_0271 YPE_0272     TRUE 0.452 60.000 0.000 1.000   NA
 4586601 4586602 YPE_0273 YPE_0274     TRUE 0.987 4.000 0.439 1.000 N NA
 4586603 4586604 YPE_0275 YPE_0276     TRUE 0.978 26.000 0.216 1.000 Y NA
 4586604 4586605 YPE_0276 YPE_0277   tnp FALSE 0.027 270.000 0.000 1.000 N NA
 4586606 4586607 YPE_0278 YPE_0279 crr ptsI TRUE 0.930 49.000 0.038 0.008 Y NA
 4586607 4586608 YPE_0279 YPE_0280 ptsI ptsH TRUE 0.928 49.000 0.033 0.008 Y NA
 4586608 4586609 YPE_0280 YPE_0281 ptsH cysK FALSE 0.005 499.000 0.019 1.000 N NA
 4586609 4586610 YPE_0281 YPE_0282 cysK   TRUE 0.786 157.000 0.122 1.000 Y NA
 4586611 4586612 YPE_0283 YPE_0284 zipA ligA FALSE 0.074 91.000 0.013 1.000 N NA
 4586612 4586613 YPE_0284 YPE_0285 ligA   TRUE 0.664 20.000 0.017 NA   NA
 4586614 4586615 YPE_0286 YPE_0287     FALSE 0.221 132.000 0.027 NA   NA
 4586615 4586616 YPE_0287 YPE_0288     FALSE 0.160 195.000 0.000 NA   NA
 4586616 4586617 YPE_0288 YPE_0289     FALSE 0.324 78.000 0.000 NA   NA
 4586617 4586618 YPE_0289 YPE_0290   tnp FALSE 0.058 291.000 0.000 NA   NA
 4586618 4586619 YPE_0290 YPE_0291 tnp gltX FALSE 0.071 193.000 0.000 1.000 N NA
 4586620 4586621 YPE_0292 YPE_0293     TRUE 0.576 37.000 0.000 NA   NA
 4586621 4586622 YPE_0293 YPE_0294     TRUE 0.520 45.000 0.000 NA   NA
 4586622 4586623 YPE_0294 YPE_0295     FALSE 0.151 200.000 0.000 NA   NA
 4586626 4586627 YPE_0298 YPE_0299     FALSE 0.301 171.000 0.071 NA   NA
 4586627 4586628 YPE_0299 YPE_0300     FALSE 0.157 136.000 0.050 1.000 N NA
 4586629 4586630 YPE_0301 YPE_0302   glk FALSE 0.216 181.000 0.048 NA   NA
 4586632 4586633 YPE_0304 YPE_0305     FALSE 0.016 245.000 0.009 1.000 N NA
 4586635 4586636 YPE_0307 YPE_0308     TRUE 0.978 27.000 0.625 NA   NA
 4586636 4586637 YPE_0308 YPE_0309     TRUE 0.998 -3.000 0.740 NA   NA
 4586638 4586639 YPE_0310 YPE_0311     TRUE 0.996 -3.000 0.333 0.046   NA
 4586639 4586640 YPE_0311 YPE_0312     FALSE 0.031 413.000 0.000 1.000   NA
 4586640 4586641 YPE_0312 YPE_0313     TRUE 0.996 2.000 0.667 1.000   NA
 4586641 4586642 YPE_0313 YPE_0314     TRUE 0.997 12.000 0.500 0.046 Y NA
 4586646 4586647 YPE_0318 YPE_0319 yfuC yfuB TRUE 0.992 -3.000 0.275 0.072 N NA
 4586647 4586648 YPE_0319 YPE_0320 yfuB yfuA TRUE 0.994 56.000 0.824 0.072 Y NA
 4586649 4586650 YPE_0321 YPE_0322 mltB   FALSE 0.004 1262.000 0.000 NA N NA
 4586651 4586652 YPE_0323 YPE_0324     TRUE 0.999 -3.000 1.000 NA   NA
 4586652 4586653 YPE_0324 YPE_0325     TRUE 0.993 1.000 0.400 NA   NA
 4586653 4586654 YPE_0325 YPE_0326     TRUE 0.997 -3.000 0.600 NA   NA
 4586654 4586655 YPE_0326 YPE_0327     TRUE 0.974 40.000 0.714 NA   NA
 4586655 4586656 YPE_0327 YPE_0328     TRUE 0.994 7.000 0.714 NA   NA
 4586656 4586657 YPE_0328 YPE_0329     TRUE 0.953 99.000 1.000 NA   NA
 4586657 4586658 YPE_0329 YPE_0330     TRUE 0.998 0.000 0.833 NA   NA
 4586659 4586660 YPE_0331 YPE_0332     TRUE 0.874 201.000 1.000 1.000 N NA
 4586660 4586661 YPE_0332 YPE_0333     TRUE 0.982 139.000 1.000 1.000 Y NA
 4586661 4586662 YPE_0333 YPE_0335     FALSE 0.246 128.000 0.000 NA   NA
 4586665 4586666 YPE_0338 YPE_0339     TRUE 0.906 105.000 0.667 NA   NA
 4586666 4586667 YPE_0339 YPE_0340     TRUE 0.988 24.000 0.800 NA   NA
 4586667 4586668 YPE_0340 YPE_0341     TRUE 0.446 326.000 0.500 NA   NA
 4586668 4586669 YPE_0341 YPE_0342     TRUE 0.459 253.000 0.333 NA   NA
 4586669 4586670 YPE_0342 YPE_0343     TRUE 0.997 4.000 0.833 NA   NA
 4586670 4586671 YPE_0343 YPE_0344     TRUE 0.934 -3.000 0.000 NA   NA
 4586671 4586673 YPE_0344 YPE_0345     FALSE 0.304 87.000 0.000 NA   NA
 4586673 4586674 YPE_0345 YPE_0346     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4586674 4586675 YPE_0346 YPE_0347     FALSE 0.015 861.000 0.000 NA   NA
 4586675 4586676 YPE_0347 YPE_0348     FALSE 0.012 3436.000 0.000 NA   NA
 4586676 4586677 YPE_0348 YPE_0349     TRUE 0.990 20.000 0.833 NA   NA
 4586677 4586678 YPE_0349 YPE_0350     TRUE 0.954 97.000 1.000 NA   NA
 4586678 4586679 YPE_0350 YPE_0351     TRUE 0.676 25.000 0.000 NA   NA
 4586680 4586681 YPE_0352 YPE_0353     FALSE 0.034 376.000 0.000 NA   NA
 4586681 4586682 YPE_0353 YPE_0354   lemA TRUE 0.920 5.000 0.074 NA   NA
 4586683 4586684 YPE_0355 YPE_0356     FALSE 0.077 255.000 0.000 NA   NA
 4586684 4586685 YPE_0356 YPE_0357   ccmA FALSE 0.025 445.000 0.000 NA   NA
 4586685 4586686 YPE_0357 YPE_0358 ccmA ccmB TRUE 0.999 -30.000 0.503 0.002 Y NA
 4586686 4586687 YPE_0358 YPE_0359 ccmB ccmC TRUE 0.988 63.000 0.501 0.001 Y NA
 4586687 4586688 YPE_0359 YPE_0360 ccmC ccmD TRUE 0.995 -3.000 0.501 1.000 N NA
 4586688 4586689 YPE_0360 YPE_0361 ccmD ccmE TRUE 0.991 -3.000 0.344 1.000 N NA
 4586689 4586690 YPE_0361 YPE_0362 ccmE ccmF TRUE 0.998 -3.000 0.211 0.002 Y NA
 4586690 4586691 YPE_0362 YPE_0363 ccmF ccmG TRUE 1.000 -3.000 0.804 0.002 Y NA
 4586691 4586692 YPE_0363 YPE_0364 ccmG ccmH TRUE 0.999 -3.000 0.578 NA Y NA
 4586692 4586693 YPE_0364 YPE_0365 ccmH   TRUE 0.999 0.000 0.727 NA Y NA
 4586693 4586694 YPE_0365 YPE_0366   vacJ TRUE 0.864 36.000 0.239 NA N NA
 4586696 4586697 YPE_0368 YPE_0369     FALSE 0.093 287.000 0.061 1.000   NA
 4586697 4586698 YPE_0369 YPE_0370   fadJ TRUE 0.998 0.000 0.430 1.000 Y NA
 4586698 4586699 YPE_0370 YPE_0371 fadJ sixA FALSE 0.007 569.000 0.000 1.000 N NA
 4586701 4586702 YPE_0373 YPE_0374 prmB aroC FALSE 0.345 77.000 0.081 1.000 N NA
 4586702 4586703 YPE_0374 YPE_0375 aroC mepA TRUE 0.629 6.000 0.025 1.000 N NA
 4586703 4586704 YPE_0375 YPE_0376 mepA   TRUE 0.968 4.000 0.160 1.000   NA
 4586704 4586705 YPE_0376 YPE_0377     TRUE 0.587 100.000 0.153 NA   NA
 4586705 4586706 YPE_0377 YPE_0378     TRUE 0.915 58.000 0.425 NA   NA
 4586711 4586712 YPE_0383 YPE_0384 flk   FALSE 0.148 285.000 0.118 NA   NA
 4586713 4586714 YPE_0385 YPE_0386   pdxB FALSE 0.346 47.000 0.043 1.000 N NA
 4586716 4586717 YPE_0388 YPE_0389 usg truA FALSE 0.169 87.000 0.040 1.000 N NA
 4586717 4586718 YPE_0389 YPE_0390 truA dedA FALSE 0.228 157.000 0.038 NA   NA
 4586718 4586719 YPE_0390 YPE_0391 dedA accD FALSE 0.085 231.000 0.020 NA   NA
 4586719 4586720 YPE_0391 YPE_0392 accD folC TRUE 0.440 249.000 0.383 1.000 N NA
 4586720 4586721 YPE_0392 YPE_0393 folC dedD TRUE 0.664 120.000 0.216 1.000   NA
 4586721 4586722 YPE_0393 YPE_0394 dedD cvpA FALSE 0.126 312.000 0.116 1.000   NA
 4586722 4586723 YPE_0394 YPE_0395 cvpA purF TRUE 0.965 13.000 0.262 1.000   NA
 4586723 4586724 YPE_0395 YPE_0396 purF ubiX FALSE 0.061 247.000 0.056 1.000 N NA
 4586724 4586725 YPE_0396 YPE_0397 ubiX hisJ FALSE 0.008 519.000 0.000 1.000 N NA
 4586725 4586726 YPE_0397 YPE_0398 hisJ hisQ TRUE 0.986 103.000 0.833 0.071 Y NA
 4586726 4586727 YPE_0398 YPE_0399 hisQ hisM TRUE 1.000 -3.000 0.900 0.020 Y NA
 4586727 4586728 YPE_0399 YPE_0400 hisM hisP TRUE 0.997 14.000 0.643 1.000 Y NA
 4586730 4586731 YPE_0402 YPE_0403     FALSE 0.149 201.000 0.000 NA   NA
 4586731 4586732 YPE_0403 YPE_0404     TRUE 0.473 222.000 0.143 0.011   NA
 4586734 4586735 YPE_0406 YPE_0691C   pbpC TRUE 0.526 44.000 0.000 NA   NA
 4586738 4586739 YPE_0409 YPE_0410     FALSE 0.068 268.000 0.000 NA   NA
 4586739 4586740 YPE_0410 YPE_0411     FALSE 0.078 254.000 0.000 NA   NA
 4586741 4586742 YPE_0412 YPE_0413     TRUE 0.688 24.000 0.000 NA   NA
 4586742 4586743 YPE_0413 YPE_0414     TRUE 0.560 39.000 0.000 NA   NA
 4586744 4586745 YPE_0415 YPE_0416 yapC   FALSE 0.020 535.000 0.000 NA   NA
 4586747 4586748 YPE_0418 YPE_0419     TRUE 0.949 -7.000 0.068 NA   NA
 4586748 4586749 YPE_0419 YPE_0420   bglB FALSE 0.216 159.000 0.000 NA   NA
 4586751 4586752 YPE_0422 YPE_0423     TRUE 0.966 26.000 0.438 1.000   NA
 4586754 4586755 YPE_0425 YPE_0426     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4586756 4586757 YPE_0427 YPE_0428     FALSE 0.285 97.000 0.000 NA   NA
 4586757 4586758 YPE_0428 YPE_0429     TRUE 0.861 12.000 0.063 NA   NA
 4586758 4586759 YPE_0429 YPE_0430     TRUE 0.997 -7.000 0.285 1.000 Y NA
 4586759 4586760 YPE_0430 YPE_0431     TRUE 0.992 -3.000 0.054 1.000 Y NA
 4586760 4586761 YPE_0431 YPE_0432     TRUE 0.969 10.000 0.238 1.000   NA
 4586761 4586762 YPE_0432 YPE_0433     TRUE 0.991 -7.000 0.179 0.003   NA
 4586762 4586763 YPE_0433 YPE_0434     FALSE 0.109 227.000 0.000 NA   NA
 4586764 4586766 YPE_0435 YPE_0436     FALSE 0.312 83.000 0.000 NA   NA
 4586766 4586767 YPE_0436 YPE_0437     FALSE 0.060 286.000 0.000 NA   NA
 4586767 4586768 YPE_0437 YPE_0438     FALSE 0.259 114.000 0.000 NA   NA
 4586768 4586769 YPE_0438 YPE_0439     FALSE 0.074 259.000 0.000 NA   NA
 4586771 4586772 YPE_0441 YPE_0442 folD   TRUE 0.827 15.000 0.055 1.000   NA
 4586773 4586774 YPE_0443 YPE_0444 tnp upp FALSE 0.085 176.000 0.000 1.000 N NA
 4586775 4586776 YPE_0445 YPE_0446 purM purN TRUE 0.941 115.000 0.230 0.002 Y NA
 4586776 4586777 YPE_0446 YPE_0447 purN speG FALSE 0.025 229.000 0.017 1.000 N NA
 4586778 4586780 YPE_0448 YPE_0449 fliB pstB1 FALSE 0.107 228.000 0.000 NA   NA
 4586780 4586781 YPE_0449 YPE_0450 pstB1 pstA TRUE 0.995 28.000 0.511 0.002 Y NA
 4586781 4586782 YPE_0450 YPE_0451 pstA pstC TRUE 0.995 0.000 0.489 1.000   NA
 4586783 4586784 YPE_0452 YPE_0453 ppk ppx TRUE 0.996 11.000 0.486 1.000 Y NA
 4586784 4586785 YPE_0453 YPE_0454 ppx   FALSE 0.299 112.000 0.047 NA   NA
 4586785 4586786 YPE_0454 YPE_0455   mgtE TRUE 0.444 52.000 0.024 NA   NA
 4586786 4586787 YPE_0455 YPE_0456 mgtE   FALSE 0.091 140.000 0.000 NA N NA
 4586788 4586789 YPE_0457 YPE_0458     TRUE 0.911 62.000 0.072 0.071 Y NA
 4586789 4586790 YPE_0458 YPE_0459     TRUE 0.920 47.000 0.000 0.071 Y NA
 4586790 4586791 YPE_0459 YPE_0460   goaG TRUE 0.868 53.000 0.000 1.000 Y NA
 4586792 4586793 YPE_0461 YPE_0462     FALSE 0.193 383.000 0.000 1.000 Y NA
 4586793 4586794 YPE_0462 YPE_0463     FALSE 0.015 364.000 0.000 1.000 N NA
 4586794 4586795 YPE_0463 YPE_0464     TRUE 0.998 0.000 1.000 1.000 N NA
 4586795 4586796 YPE_0464 YPE_0465     TRUE 0.997 -3.000 0.094 0.001 Y NA
 4586796 4586797 YPE_0465 YPE_0466   yegB TRUE 0.956 34.000 0.438 1.000   NA
 4586797 4586798 YPE_0466 YPE_0467 yegB baeR FALSE 0.014 1425.000 0.000 1.000   NA
 4586798 4586799 YPE_0467 YPE_0468 baeR   FALSE 0.319 137.000 0.062 NA   NA
 4586799 4586800 YPE_0468 YPE_0469     FALSE 0.046 275.000 0.008 NA   NA
 4586800 4586801 YPE_0469 YPE_0470   ryeE FALSE 0.275 101.000 0.000 NA   NA
 4586801 4586802 YPE_0470 YPE_0471 ryeE   FALSE 0.025 450.000 0.000 NA   NA
 4586808 4586809 YPE_0477 YPE_0478     TRUE 0.934 -3.000 0.000 NA   NA
 4586809 4586810 YPE_0478 YPE_0479     FALSE 0.403 64.000 0.000 NA   NA
 4586810 4586811 YPE_0479 YPE_0480     TRUE 0.568 38.000 0.000 NA   NA
 4586811 4586812 YPE_0480 YPE_0481     FALSE 0.403 64.000 0.000 NA   NA
 4586812 4586813 YPE_0481 YPE_0482     TRUE 0.688 24.000 0.000 NA   NA
 4586814 4586815 YPE_0483 YPE_0484 tnp guaA FALSE 0.014 375.000 0.000 1.000 N NA
 4586815 4586816 YPE_0484 YPE_0485 guaA guaB TRUE 0.899 180.000 0.190 0.001 Y NA
 4586818 4586819 YPE_0487 YPE_0488     TRUE 0.578 49.000 0.055 NA   NA
 4586819 4586820 YPE_0488 YPE_0489     FALSE 0.067 347.000 0.003 0.085   NA
 4586820 4586821 YPE_0489 YPE_0490     TRUE 0.608 148.000 0.203 1.000   NA
 4586821 4586822 YPE_0490 YPE_0491     TRUE 0.985 12.000 0.492 1.000   NA
 4586822 4586823 YPE_0491 YPE_0492   hisS TRUE 0.962 14.000 0.259 1.000   NA
 4586823 4586824 YPE_0492 YPE_0493 hisS ispG FALSE 0.358 209.000 0.207 1.000 N NA
 4586824 4586825 YPE_0493 YPE_0494 ispG   TRUE 0.823 62.000 0.233 1.000   NA
 4586825 4586826 YPE_0494 YPE_0495     TRUE 0.974 -10.000 0.153 1.000   NA
 4586826 4586827 YPE_0495 YPE_0496     FALSE 0.327 154.000 0.067 1.000   NA
 4586827 4586828 YPE_0496 YPE_0497   ndk FALSE 0.236 262.000 0.156 1.000   NA
 4586828 4586829 YPE_0497 YPE_0498 ndk   FALSE 0.045 327.000 0.000 NA   NA
 4586830 4586831 YPE_0499 YPE_0500   yapA FALSE 0.038 354.000 0.000 NA   NA
 4586832 4586833 YPE_0501 YPE_0502   pepB TRUE 0.767 79.000 0.253 NA   NA
 4586833 4586834 YPE_0502 YPE_0503 pepB   TRUE 0.571 140.000 0.171 1.000   NA
 4586834 4586835 YPE_0503 YPE_0504   fdx TRUE 0.976 30.000 0.625 1.000   NA
 4586835 4586836 YPE_0504 YPE_0505 fdx hscA TRUE 0.996 3.000 0.794 1.000 N NA
 4586836 4586837 YPE_0505 YPE_0506 hscA hscB TRUE 0.893 243.000 0.634 1.000 Y NA
 4586837 4586838 YPE_0506 YPE_0507 hscB iscA TRUE 0.861 111.000 0.500 1.000   NA
 4586838 4586839 YPE_0507 YPE_0508 iscA iscU TRUE 0.611 270.000 0.359 0.002   NA
 4586839 4586840 YPE_0508 YPE_0509 iscU iscS TRUE 0.947 31.000 0.448 1.000 N NA
 4586840 4586841 YPE_0509 YPE_0510 iscS iscR TRUE 0.899 54.000 0.424 1.000 N NA
 4586841 4586842 YPE_0510 YPE_0511 iscR   FALSE 0.351 156.000 0.126 1.000 N NA
 4586843 4586844 YPE_0512 YPE_0513   tnp FALSE 0.060 204.000 0.000 1.000 N NA
 4586845 4586846 YPE_0514 YPE_0515     TRUE 0.974 -9.000 0.150 NA   NA
 4586848 4586849 YPE_0517 YPE_0518 hcaT ail2 FALSE 0.042 352.000 0.000 1.000   NA
 4586849 4586850 YPE_0518 YPE_0519 ail2   FALSE 0.262 110.000 0.000 NA   NA
 4586850 4586851 YPE_0519 YPE_0520   glyA FALSE 0.259 113.000 0.000 NA   NA
 4586853 4586854 YPE_0522 YPE_0523 glnB nadE TRUE 0.889 15.000 0.151 1.000 N NA
 4586854 4586855 YPE_0523 YPE_0524 nadE   FALSE 0.186 160.000 0.065 1.000 N NA
 4586855 4586856 YPE_0524 YPE_0525     TRUE 0.963 -37.000 0.130 NA   NA
 4586856 4586857 YPE_0525 YPE_0526     TRUE 0.611 76.000 0.132 NA   NA
 4586857 4586858 YPE_0526 YPE_0527   tnp FALSE 0.058 206.000 0.000 1.000 N NA
 4586859 4586860 YPE_0528 YPE_0529 sroF   FALSE 0.018 580.000 0.000 NA   NA
 4586860 4586861 YPE_0529 YPE_0530     FALSE 0.046 323.000 0.000 NA   NA
 4586864 4586865 YPE_0533 YPE_0534 yfhC   FALSE 0.203 110.000 0.062 NA N NA
 4586865 4586866 YPE_0534 YPE_0535     FALSE 0.386 275.000 0.316 NA   NA
 4586867 4586868 YPE_0536 YPE_0537   yfhL FALSE 0.287 162.000 0.056 1.000   NA
 4586869 4586870 YPE_0538 YPE_0539 tnp acpS FALSE 0.063 202.000 0.000 1.000 N NA
 4586870 4586871 YPE_0539 YPE_0540 acpS pdxJ TRUE 0.988 0.000 0.326 1.000 N NA
 4586871 4586872 YPE_0540 YPE_0541 pdxJ   FALSE 0.073 190.000 0.000 1.000 N NA
 4586872 4586873 YPE_0541 YPE_0542     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4586873 4586874 YPE_0542 YPE_0543   recO TRUE 0.796 127.000 0.000 0.024 Y NA
 4586874 4586875 YPE_0543 YPE_0544 recO era TRUE 0.925 10.000 0.109 1.000   NA
 4586875 4586876 YPE_0544 YPE_0545 era rnc TRUE 0.987 -3.000 0.127 0.057   NA
 4586876 4586877 YPE_0545 YPE_0546 rnc lepB FALSE 0.103 352.000 0.117 1.000   NA
 4586877 4586878 YPE_0546 YPE_0547 lepB lepA TRUE 0.958 10.000 0.187 1.000   NA
 4586880 4586881 YPE_0549 YPE_0550 rseC rseB TRUE 0.999 -3.000 0.609 NA Y NA
 4586881 4586882 YPE_0550 YPE_0551 rseB rseA TRUE 0.999 0.000 0.856 NA Y NA
 4586882 4586883 YPE_0551 YPE_0552 rseA rpoE TRUE 0.977 26.000 0.705 NA N NA
 4586887 4586888 YPE_0556 YPE_0557 yplB yplA TRUE 0.845 78.000 0.375 NA   NA
 4586888 4586889 YPE_0557 YPE_0558 yplA   FALSE 0.200 179.000 0.000 1.000   NA
 4586891 4586892 YPE_0560 YPE_0561     TRUE 0.975 10.000 0.300 NA   NA
 4586892 4586893 YPE_0561 YPE_0562     TRUE 0.998 -3.000 0.939 NA   NA
 4586893 4586894 YPE_0562 YPE_0563     TRUE 0.655 85.000 0.173 NA   NA
 4586894 4586895 YPE_0563 YPE_0564     TRUE 0.988 -3.000 0.211 1.000   NA
 4586895 4586896 YPE_0564 YPE_4350   ybgJ TRUE 0.924 -6.000 0.000 NA   NA
 4586896 4586898 YPE_4350 YPE_0565 ybgJ   FALSE 0.017 619.000 0.000 NA   NA
 4586898 4586899 YPE_0565 YPE_0566     FALSE 0.216 123.000 0.013 1.000   NA
 4586899 4586900 YPE_0566 YPE_0567   phrB TRUE 0.690 -3.000 0.008 1.000 N NA
 4586900 4586901 YPE_0567 YPE_0568 phrB   FALSE 0.205 130.000 0.019 NA   NA
 4586901 4586902 YPE_0568 YPE_0569     FALSE 0.215 339.000 0.231 NA   NA
 4586903 4586904 YPE_0570 YPE_0571 kdpA kdpB TRUE 0.943 94.000 0.201 0.001 Y NA
 4586904 4586905 YPE_0571 YPE_0572 kdpB kdpC TRUE 0.976 212.000 0.877 0.001 Y NA
 4586905 4586906 YPE_0572 YPE_0573 kdpC kdpD TRUE 0.868 10.000 0.100 1.000 N NA
 4586906 4586907 YPE_0573 YPE_0574 kdpD kdpE TRUE 0.720 293.000 0.385 1.000 Y NA
 4586907 4586908 YPE_0574 YPE_0575 kdpE   TRUE 0.558 95.000 0.129 NA   NA
 4586909 4586910 YPE_0576 YPE_0577     TRUE 0.533 43.000 0.000 NA   NA
 4586910 4586911 YPE_0577 YPE_0578   pgm FALSE 0.121 218.000 0.000 NA   NA
 4586911 4586912 YPE_0578 YPE_0579 pgm seqA TRUE 0.802 31.000 0.151 1.000 N NA
 4586913 4586914 YPE_0580 YPE_0581     FALSE 0.260 112.000 0.000 NA   NA
 4586915 4586916 YPE_0582 YPE_0583   celD TRUE 0.850 52.000 0.222 1.000   NA
 4586916 4586917 YPE_0583 YPE_0584 celD celC TRUE 0.970 37.000 0.727 1.000 N NA
 4586917 4586918 YPE_0584 YPE_0585 celC celB TRUE 0.983 167.000 0.833 0.008 Y NA
 4586918 4586919 YPE_0585 YPE_0586 celB celA TRUE 0.995 11.000 0.250 0.008 Y NA
 4586920 4586921 YPE_0587 YPE_0588     TRUE 0.986 16.000 0.233 NA Y NA
 4586924 4586925 YPE_0591 YPE_0592     TRUE 0.425 149.000 0.095 0.085 N NA
 4586925 4586926 YPE_0592 YPE_0593   ureG FALSE 0.005 1155.000 0.000 1.000 N NA
 4586926 4586927 YPE_0593 YPE_0594 ureG ureF TRUE 0.854 127.000 0.064 0.002 Y NA
 4586927 4586928 YPE_0594 YPE_0595 ureF ureE TRUE 0.996 22.000 0.460 0.002 Y NA
 4586928 4586929 YPE_0595 YPE_0596 ureE ureC FALSE 0.158 296.000 0.067 0.001 N NA
 4586929 4586930 YPE_0596 YPE_0597 ureC ureB TRUE 0.959 90.000 0.267 0.001 Y NA
 4586930 4586931 YPE_0597 YPE_0598 ureB ureA TRUE 0.980 53.000 0.267 0.001 Y NA
 4586931 4586932 YPE_0598 YPE_0599 ureA   FALSE 0.089 1199.000 0.000 1.000 Y NA
 4586932 4586933 YPE_0599 YPE_0600     TRUE 0.997 -7.000 0.500 0.023   NA
 4586933 4586934 YPE_0600 YPE_0601     TRUE 0.998 0.000 1.000 1.000   NA
 4586934 4586935 YPE_0601 YPE_0602     TRUE 1.000 -3.000 1.000 0.070 Y NA
 4586935 4586936 YPE_0602 YPE_0603     TRUE 1.000 -3.000 1.000 0.070 Y NA
 4586936 4586937 YPE_0603 YPE_0604   cspG FALSE 0.006 884.000 0.000 1.000 N NA
 4586942 4586943 YPE_0609 YPE_0610     FALSE 0.023 478.000 0.000 NA   NA
 4586944 4586945 YPE_0611 YPE_0612 nrdH nrdI TRUE 0.972 14.000 0.440 NA N NA
 4586945 4586946 YPE_0612 YPE_0613 nrdI nrdE TRUE 0.953 51.000 0.216 NA Y NA
 4586946 4586947 YPE_0613 YPE_0614 nrdE nrdF TRUE 0.932 107.000 0.190 0.002 Y NA
 4586947 4586948 YPE_0614 YPE_0615 nrdF proV FALSE 0.006 676.000 0.000 1.000 N NA
 4586948 4586949 YPE_0615 YPE_0616 proV proW TRUE 0.999 -7.000 0.630 1.000 Y NA
 4586949 4586950 YPE_0616 YPE_0617 proW proX TRUE 0.993 48.000 0.695 0.070 Y NA
 4586953 4586954 YPE_0620 YPE_0621     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4586954 4586955 YPE_0621 YPE_0622   trp1400A FALSE 0.021 547.000 0.000 1.000   NA
 4586955 4586956 YPE_0622 YPE_0623 trp1400A   FALSE 0.312 83.000 0.000 NA   NA
 4586956 4586958 YPE_0623 YPE_0624     FALSE 0.014 1125.000 0.000 NA   NA
 4586958 4586959 YPE_0624 YPE_0625   ybfE FALSE 0.265 332.000 0.276 1.000   NA
 4586959 4586960 YPE_0625 YPE_0626 ybfE fldA FALSE 0.317 417.000 0.473 1.000   NA
 4586960 4586961 YPE_0626 YPE_0627 fldA fur FALSE 0.087 367.000 0.156 1.000 N NA
 4586962 4586963 YPE_0628 YPE_0629   glnS FALSE 0.017 706.000 0.000 1.000   NA
 4586963 4586964 YPE_0629 YPE_0630 glnS tnp FALSE 0.063 202.000 0.000 1.000 N NA
 4586964 4586965 YPE_0630 YPE_0631 tnp nagE FALSE 0.029 265.000 0.000 1.000 N NA
 4586966 4586967 YPE_0632 YPE_0633 nagB nagA TRUE 0.997 20.000 0.557 0.001 Y NA
 4586967 4586968 YPE_0633 YPE_0634 nagA nagC TRUE 0.995 17.000 0.571 1.000 Y NA
 4586968 4586969 YPE_0634 YPE_0635 nagC nagD TRUE 0.829 73.000 0.070 1.000 Y NA
 4586969 4586970 YPE_0635 YPE_0636 nagD asnB FALSE 0.015 355.000 0.000 1.000 N NA
 4586972 4586973 YPE_0638 YPE_0639     TRUE 0.837 8.000 0.000 NA   NA
 4586973 4586974 YPE_0639 YPE_0640     TRUE 0.633 30.000 0.000 NA   NA
 4586974 4586975 YPE_0640 YPE_0641     TRUE 0.609 33.000 0.000 NA   NA
 4586975 4586976 YPE_0641 YPE_0642     TRUE 0.854 6.000 0.000 NA   NA
 4586978 4586979 YPE_0644 YPE_0645 miaB   FALSE 0.160 327.000 0.220 1.000 N NA
 4586979 4586980 YPE_0645 YPE_0646     TRUE 0.995 -3.000 0.457 NA   NA
 4586980 4586981 YPE_0646 YPE_0647     TRUE 0.553 118.000 0.150 NA   NA
 4586981 4586982 YPE_0647 YPE_0648   lnt TRUE 0.987 8.000 0.557 1.000 N NA
 4586982 4586983 YPE_0648 YPE_0649 lnt gltI FALSE 0.006 765.000 0.000 1.000 N NA
 4586983 4586984 YPE_0649 YPE_0650 gltI gltJ TRUE 0.851 174.000 0.150 0.069 Y NA
 4586984 4586985 YPE_0650 YPE_0651 gltJ gltK TRUE 1.000 0.000 0.933 0.019 Y NA
 4586985 4586986 YPE_0651 YPE_0652 gltK gltL TRUE 0.998 -3.000 0.379 1.000 Y NA
 4586988 4586989 YPE_0654 YPE_0655 leuS rlpB TRUE 0.907 15.000 0.182 NA N NA
 4586989 4586990 YPE_0655 YPE_0656 rlpB holA TRUE 0.979 -3.000 0.199 NA N NA
 4586990 4586991 YPE_0656 YPE_0657 holA nadD TRUE 0.838 -10.000 0.045 1.000 N NA
 4586991 4586992 YPE_0657 YPE_0658 nadD   FALSE 0.107 224.000 0.032 NA   NA
 4586992 4586993 YPE_0658 YPE_0659     TRUE 0.985 4.000 0.307 NA   NA
 4586993 4586994 YPE_0659 YPE_0660   mrdA FALSE 0.302 82.000 0.031 NA   NA
 4586994 4586995 YPE_0660 YPE_0661 mrdA mrdB FALSE 0.105 185.000 0.046 1.000 N NA
 4586995 4586996 YPE_0661 YPE_0662 mrdB rlpA TRUE 0.613 10.000 0.035 NA N NA
 4586996 4586997 YPE_0662 YPE_0663 rlpA dacA TRUE 0.623 403.000 0.475 NA Y NA
 4586997 4586998 YPE_0663 YPE_0664 dacA   FALSE 0.257 198.000 0.081 NA   NA
 4586998 4586999 YPE_0664 YPE_0665   lipB TRUE 0.455 212.000 0.219 NA   NA
 4586999 4587000 YPE_0665 YPE_0666 lipB lipA TRUE 0.929 193.000 0.319 0.001 Y NA
 4587006 4587007 YPE_0672 YPE_0673     FALSE 0.183 182.000 0.000 NA   NA
 4587010 4587011 YPE_0676 YPE_0677     FALSE 0.009 465.000 0.000 1.000 N NA
 4587011 4587012 YPE_0677 YPE_0678     TRUE 0.990 10.000 0.199 1.000 Y NA
 4587012 4587013 YPE_0678 YPE_0679     TRUE 0.749 153.000 0.086 1.000 Y NA
 4587013 4587014 YPE_0679 YPE_0680     TRUE 0.726 32.000 0.064 1.000   NA
 4587014 4587015 YPE_0680 YPE_0681     TRUE 0.910 24.000 0.176 1.000   NA
 4587015 4587016 YPE_0681 YPE_0682     TRUE 0.997 12.000 0.444 0.015 Y NA
 4587016 4587017 YPE_0682 YPE_0683     TRUE 0.993 49.000 0.667 0.015 Y NA
 4587017 4587018 YPE_0683 YPE_0684     FALSE 0.249 126.000 0.000 NA   NA
 4587018 4587020 YPE_0684 YPE_0685     FALSE 0.056 294.000 0.000 NA   NA
 4587020 4587021 YPE_0685 YPE_0686     TRUE 0.816 14.000 0.093 1.000 N NA
 4587022 4587023 YPE_0687 YPE_0688     FALSE 0.016 689.000 0.000 NA   NA
 4587023 4587024 YPE_0688 YPE_0689     FALSE 0.035 371.000 0.000 NA   NA
 4587024 4587025 YPE_0689 YPE_0691N   pbpC TRUE 0.451 57.000 0.000 NA   NA
 4587025 4587027 YPE_0691N YPE_0692 pbpC   FALSE 0.346 72.000 0.000 NA   NA
 4587030 4587031 YPE_0695 YPE_0696 pta ackA TRUE 0.866 168.000 0.634 1.000   NA
 4587031 4587032 YPE_0696 YPE_0697 ackA   TRUE 0.908 -10.000 0.000 NA   NA
 4587033 4587034 YPE_0698 YPE_0699     FALSE 0.235 308.000 0.221 NA   NA
 4587034 4587035 YPE_0699 YPE_0700     TRUE 0.758 159.000 0.375 NA   NA
 4587035 4587036 YPE_0700 YPE_0701     FALSE 0.174 292.000 0.136 1.000   NA
 4587036 4587037 YPE_0701 YPE_0702     TRUE 0.656 27.000 0.000 NA   NA
 4587038 4587039 YPE_0703 YPE_0704 yfbR yfbQ TRUE 0.421 151.000 0.104 1.000   NA
 4587040 4587041 YPE_0705 YPE_0706   lrhA FALSE 0.025 451.000 0.000 NA   NA
 4587041 4587042 YPE_0706 YPE_0707 lrhA nuoA FALSE 0.006 684.000 0.000 1.000 N NA
 4587042 4587043 YPE_0707 YPE_0708 nuoA nuoB TRUE 0.967 102.000 0.377 0.002 Y NA
 4587043 4587044 YPE_0708 YPE_0709 nuoB nuoC TRUE 0.982 141.000 0.691 0.002 Y NA
 4587044 4587045 YPE_0709 YPE_0710 nuoC nuoE TRUE 0.988 48.000 0.407 0.006 Y NA
 4587045 4587046 YPE_0710 YPE_0711 nuoE nuoF TRUE 0.998 -3.000 0.186 0.006 Y NA
 4587046 4587047 YPE_0711 YPE_0712 nuoF nuoG TRUE 0.935 87.000 0.180 0.006 Y NA
 4587047 4587048 YPE_0712 YPE_0713 nuoG nuoH TRUE 1.000 -3.000 0.664 0.006 Y NA
 4587048 4587049 YPE_0713 YPE_0714 nuoH nuoI TRUE 0.996 15.000 0.423 0.006 Y NA
 4587049 4587050 YPE_0714 YPE_0715 nuoI nuoJ TRUE 0.997 13.000 0.428 0.006 Y NA
 4587050 4587051 YPE_0715 YPE_0716 nuoJ nuoK TRUE 0.999 -3.000 0.269 0.002 Y NA
 4587051 4587052 YPE_0716 YPE_0717 nuoK nuoL TRUE 0.998 -3.000 0.211 0.006 Y NA
 4587052 4587053 YPE_0717 YPE_0718 nuoL nuoM TRUE 0.996 40.000 0.713 0.001 Y NA
 4587053 4587054 YPE_0718 YPE_0719 nuoM nuoN TRUE 0.998 7.000 0.437 0.001 Y NA
 4587054 4587055 YPE_0719 YPE_0720 nuoN   FALSE 0.073 236.000 0.011 NA   NA
 4587056 4587057 YPE_0721 YPE_0722   idnK TRUE 0.839 78.000 0.095 NA Y NA
 4587057 4587058 YPE_0722 YPE_0723 idnK idnO TRUE 0.570 49.000 0.095 1.000 N NA
 4587058 4587059 YPE_0723 YPE_0724 idnO   FALSE 0.016 759.000 0.000 1.000   NA
 4587060 4587061 YPE_0725 YPE_0726     FALSE 0.009 466.000 0.000 1.000 N NA
 4587061 4587062 YPE_0726 YPE_0727     FALSE 0.289 531.000 0.667 1.000 N NA
 4587062 4587063 YPE_0727 YPE_0728     TRUE 0.642 30.000 0.036 NA   NA
 4587063 4587064 YPE_0728 YPE_0729   edd TRUE 0.840 4.000 0.008 NA   NA
 4587064 4587065 YPE_0729 YPE_0730 edd   FALSE 0.385 66.000 0.000 NA   NA
 4587065 4587066 YPE_0730 YPE_0731   elaB FALSE 0.017 648.000 0.000 NA   NA
 4587066 4587067 YPE_0731 YPE_0732 elaB   FALSE 0.019 555.000 0.000 NA   NA
 4587067 4587068 YPE_0732 YPE_0733   menF FALSE 0.020 528.000 0.000 NA   NA
 4587068 4587069 YPE_0733 YPE_0734 menF menD TRUE 0.780 228.000 0.281 1.000 Y NA
 4587069 4587070 YPE_0734 YPE_0735 menD yfbB TRUE 0.993 -3.000 0.355 NA   NA
 4587070 4587071 YPE_0735 YPE_0736 yfbB menB TRUE 0.964 14.000 0.280 NA   NA
 4587071 4587072 YPE_0736 YPE_0737 menB menC TRUE 0.998 0.000 0.171 0.002 Y NA
 4587072 4587073 YPE_0737 YPE_0738 menC menE TRUE 0.991 -12.000 0.283 0.002 N NA
 4587073 4587074 YPE_0738 YPE_0739 menE   FALSE 0.197 66.000 0.000 1.000 N NA
 4587077 4587078 YPE_0742 YPE_0743     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4587080 4587081 YPE_0745 YPE_0746 glnQ glnP TRUE 0.991 -3.000 0.051 1.000 Y NA
 4587081 4587082 YPE_0746 YPE_0747 glnP glnH TRUE 0.961 35.000 0.103 0.086 Y NA
 4587082 4587083 YPE_0747 YPE_0748 glnH   FALSE 0.020 570.000 0.000 1.000   NA
 4587083 4587084 YPE_0748 YPE_0749   dps FALSE 0.051 320.000 0.000 1.000   NA
 4587084 4587085 YPE_0749 YPE_0750 dps tam FALSE 0.081 257.000 0.000 1.000   NA
 4587085 4587086 YPE_0750 YPE_0751 tam   TRUE 0.849 23.000 0.000 0.049   NA
 4587086 4587087 YPE_0751 YPE_0752     TRUE 0.698 16.000 0.016 NA   NA
 4587088 4587089 YPE_0753 YPE_0754 ompX   FALSE 0.019 316.000 0.000 1.000 N NA
 4587089 4587090 YPE_0754 YPE_0755     FALSE 0.097 238.000 0.000 NA   NA
 4587090 4587091 YPE_0755 YPE_0756     FALSE 0.157 196.000 0.000 NA   NA
 4587091 4587092 YPE_0756 YPE_0757   gutB FALSE 0.018 583.000 0.000 NA   NA
 4587092 4587093 YPE_0757 YPE_0758 gutB rbsB FALSE 0.312 175.000 0.125 1.000 N NA
 4587093 4587094 YPE_0758 YPE_0759 rbsB   TRUE 0.965 40.000 0.125 0.015 Y NA
 4587094 4587095 YPE_0759 YPE_0760     TRUE 0.996 -3.000 0.111 0.015 Y NA
 4587096 4587097 YPE_0761 YPE_0762     TRUE 0.511 247.000 0.000 0.064 Y NA
 4587098 4587099 YPE_0763 YPE_0764     FALSE 0.361 69.000 0.000 NA   NA
 4587099 4587100 YPE_0764 YPE_0765     FALSE 0.036 366.000 0.000 NA   NA
 4587100 4587101 YPE_0765 YPE_0766     TRUE 0.488 117.000 0.167 1.000 N NA
 4587101 4587102 YPE_0766 YPE_0767     FALSE 0.368 96.000 0.000 0.043 N NA
 4587102 4587103 YPE_0767 YPE_0768     FALSE 0.007 652.000 0.000 1.000 N NA
 4587103 4587104 YPE_0768 YPE_0769     TRUE 0.680 144.000 0.000 1.000 Y NA
 4587104 4587105 YPE_0769 YPE_0770     TRUE 0.837 8.000 0.000 NA   NA
 4587105 4587106 YPE_0770 YPE_0771     FALSE 0.088 245.000 0.000 NA   NA
 4587108 4587109 YPE_0773 YPE_0774     TRUE 0.823 10.000 0.000 NA   NA
 4587109 4587110 YPE_0774 YPE_0775     FALSE 0.143 203.000 0.000 NA   NA
 4587110 4587111 YPE_0775 YPE_0776     FALSE 0.230 142.000 0.000 NA   NA
 4587111 4587112 YPE_0776 YPE_0777     FALSE 0.277 100.000 0.000 NA   NA
 4587112 4587113 YPE_0777 YPE_0778     FALSE 0.074 258.000 0.000 NA   NA
 4587114 4587115 YPE_0779 YPE_0780 mtlK manB2 TRUE 0.734 100.000 0.000 1.000 Y NA
 4587115 4587116 YPE_0780 YPE_0781 manB2   TRUE 0.530 17.000 0.000 1.000 N NA
 4587117 4587118 YPE_0782 YPE_0783     TRUE 0.982 109.000 0.733 0.068 Y NA
 4587118 4587119 YPE_0783 YPE_0784     TRUE 0.999 1.000 0.711 0.068 Y NA
 4587119 4587120 YPE_0784 YPE_0785     TRUE 0.670 147.000 0.000 NA Y NA
 4587120 4587121 YPE_0785 YPE_0786     TRUE 0.656 27.000 0.000 NA   NA
 4587121 4587122 YPE_0786 YPE_0787     FALSE 0.252 123.000 0.000 NA   NA
 4587122 4587123 YPE_0787 YPE_0788     TRUE 0.560 39.000 0.000 NA   NA
 11514273 4587125   YPE_0790     FALSE NA 121.000 0.000 NA   NA
 11656636 4587125   YPE_0790     FALSE NA 121.000 0.000 NA   NA
 11799028 4587125   YPE_0790     FALSE NA 121.000 0.000 NA   NA
 11514274 4587125   YPE_0790     FALSE NA 88.000 0.000 NA   NA
 11656637 4587125   YPE_0790     FALSE NA 88.000 0.000 NA   NA
 11799029 4587125   YPE_0790     FALSE NA 88.000 0.000 NA   NA
 11514275 4587125   YPE_0790     FALSE NA 60.000 0.000 NA   NA
 11656638 4587125   YPE_0790     FALSE NA 60.000 0.000 NA   NA
 11799030 4587125   YPE_0790     FALSE NA 60.000 0.000 NA   NA
 11514276 4587125   YPE_0790     FALSE NA 28.000 0.000 NA   NA
 11656639 4587125   YPE_0790     FALSE NA 28.000 0.000 NA   NA
 11799031 4587125   YPE_0790     FALSE NA 28.000 0.000 NA   NA
 11514277 4587125   YPE_0790     FALSE NA 0.000 0.000 NA   NA
 11656640 4587125   YPE_0790     FALSE NA 0.000 0.000 NA   NA
 11799032 4587125   YPE_0790     FALSE NA 0.000 0.000 NA   NA
 4587125 4587126 YPE_0790 YPE_0791     FALSE 0.033 382.000 0.000 NA   NA
 11514278 4587125   YPE_0790     FALSE NA -32.000 0.000 NA   NA
 11656641 4587125   YPE_0790     FALSE NA -32.000 0.000 NA   NA
 11799033 4587125   YPE_0790     FALSE NA -32.000 0.000 NA   NA
 11514279 4587125   YPE_0790     FALSE NA -60.000 0.000 NA   NA
 11656642 4587125   YPE_0790     FALSE NA -60.000 0.000 NA   NA
 11799034 4587125   YPE_0790     FALSE NA -60.000 0.000 NA   NA
 11514280 4587125   YPE_0790     FALSE NA -92.000 0.000 NA   NA
 11656643 4587125   YPE_0790     FALSE NA -92.000 0.000 NA   NA
 11799035 4587125   YPE_0790     FALSE NA -92.000 0.000 NA   NA
 11514281 4587125   YPE_0790     FALSE NA -120.000 0.000 NA   NA
 11656644 4587125   YPE_0790     FALSE NA -120.000 0.000 NA   NA
 11799036 4587125   YPE_0790     FALSE NA -120.000 0.000 NA   NA
 11514282 4587125   YPE_0790     FALSE NA -152.000 0.000 NA   NA
 11656645 4587125   YPE_0790     FALSE NA -152.000 0.000 NA   NA
 11799037 4587125   YPE_0790     FALSE NA -152.000 0.000 NA   NA
 11514283 4587125   YPE_0790     FALSE NA -179.000 0.000 NA   NA
 11656646 4587125   YPE_0790     FALSE NA -179.000 0.000 NA   NA
 11799038 4587125   YPE_0790     FALSE NA -179.000 0.000 NA   NA
 11514284 4587125   YPE_0790     FALSE NA -151.000 0.000 NA   NA
 11656647 4587125   YPE_0790     FALSE NA -151.000 0.000 NA   NA
 11799039 4587125   YPE_0790     FALSE NA -151.000 0.000 NA   NA
 11514285 4587125   YPE_0790     FALSE NA -119.000 0.000 NA   NA
 11656648 4587125   YPE_0790     FALSE NA -119.000 0.000 NA   NA
 11799040 4587125   YPE_0790     FALSE NA -119.000 0.000 NA   NA
 11514286 4587125   YPE_0790     FALSE NA -91.000 0.000 NA   NA
 11656649 4587125   YPE_0790     FALSE NA -91.000 0.000 NA   NA
 11799041 4587125   YPE_0790     FALSE NA -91.000 0.000 NA   NA
 11514287 4587125   YPE_0790     FALSE NA -59.000 0.000 NA   NA
 11656650 4587125   YPE_0790     FALSE NA -59.000 0.000 NA   NA
 11799042 4587125   YPE_0790     FALSE NA -59.000 0.000 NA   NA
 11514288 4587125   YPE_0790     FALSE NA -31.000 0.000 NA   NA
 11656651 4587125   YPE_0790     FALSE NA -31.000 0.000 NA   NA
 11799043 4587125   YPE_0790     FALSE NA -31.000 0.000 NA   NA
 11514289 4587125   YPE_0790     FALSE NA 1.000 0.000 NA   NA
 11656652 4587125   YPE_0790     FALSE NA 1.000 0.000 NA   NA
 11799044 4587125   YPE_0790     FALSE NA 1.000 0.000 NA   NA
 4587126 4587127 YPE_0791 YPE_0792     TRUE 0.998 -3.000 0.707 NA   NA
 4587127 4587128 YPE_0792 YPE_0793     FALSE 0.258 116.000 0.000 NA   NA
 4587128 4587129 YPE_0793 YPE_0794     TRUE 0.568 38.000 0.000 NA   NA
 4587129 4587130 YPE_0794 YPE_0795     TRUE 0.998 -3.000 0.895 NA   NA
 4587130 4587131 YPE_0795 YPE_0796     TRUE 0.990 18.000 0.787 NA   NA
 4587131 4587132 YPE_0796 YPE_0797     TRUE 0.985 11.000 0.468 NA   NA
 4587133 4587134 YPE_0798 YPE_0799     TRUE 0.993 11.000 0.714 1.000   NA
 4587134 4587135 YPE_0799 YPE_0800     TRUE 0.896 47.000 0.286 1.000   NA
 4587136 4587137 YPE_0801 YPE_0802   ypeR FALSE 0.203 486.000 0.000 0.062 Y NA
 4587139 4587140 YPE_0804 YPE_0805     TRUE 0.576 37.000 0.000 NA   NA
 4587140 4587141 YPE_0805 YPE_0806     FALSE 0.242 132.000 0.000 NA   NA
 4587141 4587142 YPE_0806 YPE_0807     FALSE 0.172 187.000 0.000 NA   NA
 4587142 4587143 YPE_0807 YPE_0808     TRUE 0.526 44.000 0.000 NA   NA
 4587143 4587144 YPE_0808 YPE_0809     FALSE 0.219 149.000 0.033 NA   NA
 4587145 4587146 YPE_0810 YPE_0811   solA FALSE 0.028 267.000 0.000 1.000 N NA
 4587146 4587147 YPE_0811 YPE_1733C solA   FALSE 0.081 251.000 0.000 NA   NA
 4587152 4587153 YPE_0815 YPE_0816     TRUE 0.676 25.000 0.000 NA   NA
 4587153 4587154 YPE_0816 YPE_0817   yfeD FALSE 0.369 68.000 0.000 NA   NA
 4587154 4587155 YPE_0817 YPE_0818 yfeD yfeC TRUE 0.999 -3.000 0.525 0.006 Y NA
 4587155 4587156 YPE_0818 YPE_0819 yfeC yfeB TRUE 0.999 0.000 0.857 1.000 Y NA
 4587156 4587157 YPE_0819 YPE_0820 yfeB yfeA TRUE 1.000 -3.000 0.894 1.000 Y NA
 4587161 4587162 YPE_0824 YPE_0825     FALSE 0.050 310.000 0.000 NA   NA
 4587163 4587164 YPE_0826 YPE_0827 thrS infC TRUE 0.993 4.000 0.186 1.000 Y NA
 4587164 4587165 YPE_0827 YPE_0828 infC rpmI TRUE 0.972 97.000 0.652 1.000 Y NA
 4587165 4587166 YPE_0828 YPE_0829 rpmI rplT TRUE 0.997 38.000 0.928 0.014 Y NA
 4587166 4587167 YPE_0829 YPE_0830 rplT pheM FALSE 0.282 98.000 0.000 NA   NA
 4587167 4587168 YPE_0830 YPE_0831 pheM pheS FALSE 0.037 357.000 0.000 NA   NA
 4587168 4587169 YPE_0831 YPE_0832 pheS pheT TRUE 0.998 14.000 0.574 0.001 Y NA
 4587169 4587170 YPE_0832 YPE_0833 pheT ihfA TRUE 0.960 5.000 0.208 1.000 N NA
 4587170 4587171 YPE_0833 YPE_0834 ihfA   FALSE 0.043 334.000 0.000 NA   NA
 4587171 4587172 YPE_0834 YPE_0835   btuC FALSE 0.124 227.000 0.044 NA   NA
 4587172 4587173 YPE_0835 YPE_0836 btuC btuE FALSE 0.387 70.000 0.084 1.000 N NA
 4587173 4587174 YPE_0836 YPE_0837 btuE btuD TRUE 0.498 22.000 0.036 1.000 N NA
 4587174 4587175 YPE_0837 YPE_0838 btuD arnB FALSE 0.076 350.000 0.129 1.000 N NA
 4587175 4587176 YPE_0838 YPE_0839 arnB arnC TRUE 0.997 -13.000 0.378 NA Y NA
 4587176 4587177 YPE_0839 YPE_0840 arnC arnA TRUE 0.997 -3.000 0.220 NA Y NA
 4587177 4587178 YPE_0840 YPE_0841 arnA   TRUE 0.999 -3.000 0.447 1.000 Y NA
 4587178 4587179 YPE_0841 YPE_0842     TRUE 0.916 -3.000 0.061 1.000 N NA
 4587179 4587180 YPE_0842 YPE_0843     TRUE 0.989 -3.000 0.227 1.000   NA
 4587180 4587181 YPE_0843 YPE_0844     TRUE 0.997 -3.000 0.613 NA   NA
 4587181 4587182 YPE_0844 YPE_0845   nlpC FALSE 0.209 280.000 0.161 NA   NA
 4587182 4587183 YPE_0845 YPE_0846 nlpC lplA FALSE 0.280 125.000 0.091 NA N NA
 4587183 4587184 YPE_0846 YPE_0847 lplA ydiU FALSE 0.403 64.000 0.000 NA   NA
 4587186 4587187 YPE_0848 YPE_0849 aroH   TRUE 0.536 157.000 0.165 1.000   NA
 4587189 4587190 YPE_0851 YPE_0852 rprA   FALSE 0.071 264.000 0.000 NA   NA
 4587191 4587192 YPE_0853 YPE_0854     FALSE 0.393 122.000 0.129 NA N NA
 4587192 4587193 YPE_0854 YPE_0855     FALSE 0.074 259.000 0.000 NA   NA
 4587193 4587194 YPE_0855 YPE_0856     FALSE 0.189 178.000 0.000 NA   NA
 4587194 4587195 YPE_0856 YPE_0857     TRUE 0.783 15.000 0.041 NA   NA
 4587195 4587196 YPE_0857 YPE_0858     TRUE 0.920 186.000 0.466 1.000 Y NA
 4587196 4587197 YPE_0858 YPE_0859     TRUE 0.965 77.000 0.482 1.000 Y NA
 4587197 4587198 YPE_0859 YPE_0860   sufS TRUE 0.980 -3.000 0.193 1.000 N NA
 4587198 4587199 YPE_0860 YPE_0861 sufS   TRUE 0.663 89.000 0.183 NA   NA
 4587199 4587200 YPE_0861 YPE_0863     FALSE 0.066 271.000 0.000 NA   NA
 4587202 4587203 YPE_0864 YPE_0865     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4587203 4587204 YPE_0865 YPE_0866   tnp FALSE 0.162 582.000 0.000 0.092 Y NA
 4587204 4587205 YPE_0866 YPE_0867 tnp lpp FALSE 0.072 191.000 0.000 1.000 N NA
 4587205 4587206 YPE_0867 YPE_0868 lpp pykF FALSE 0.019 321.000 0.000 1.000 N NA
 4587206 4587207 YPE_0868 YPE_0869 pykF   FALSE 0.018 576.000 0.000 NA   NA
 4587207 4587208 YPE_0869 YPE_0870     TRUE 0.432 60.000 0.000 NA   NA
 4587208 4587209 YPE_0870 YPE_0871     FALSE 0.091 243.000 0.000 NA   NA
 4587211 4587212 YPE_0873 YPE_0874 cfa   FALSE 0.009 480.000 0.000 1.000 N NA
 4587214 4587215 YPE_0876 YPE_0877 purR sodB FALSE 0.008 527.000 0.000 1.000 N NA
 4587215 4587216 YPE_0877 YPE_0878 sodB   FALSE 0.007 378.000 0.015 1.000 N NA
 4587217 4587218 YPE_0879 YPE_0880     FALSE 0.277 100.000 0.000 NA   NA
 4587219 4587220 YPE_0881 YPE_0882 rnt gloA TRUE 0.431 112.000 0.136 1.000 N NA
 4587222 4587223 YPE_0884 YPE_0885     TRUE 0.777 88.000 0.362 1.000 N NA
 4587223 4587224 YPE_0885 YPE_0886     FALSE 0.290 223.000 0.128 1.000   NA
 4587225 4587226 YPE_0887 YPE_0888     FALSE 0.273 132.000 0.045 NA   NA
 4587226 4587227 YPE_0888 YPE_0889   rovA FALSE 0.016 798.000 0.000 1.000   NA
 4587229 4587230 YPE_0891 YPE_0892     TRUE 0.445 58.000 0.034 NA   NA
 4587230 4587231 YPE_0892 YPE_0893   pdxH FALSE 0.294 91.000 0.034 NA   NA
 4587231 4587232 YPE_0893 YPE_0894 pdxH tyrS FALSE 0.129 182.000 0.054 1.000 N NA
 4587232 4587233 YPE_0894 YPE_0895 tyrS pdxY FALSE 0.120 155.000 0.041 1.000 N NA
 4587235 4587236 YPE_0897 YPE_0898     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4587237 4587238 YPE_0899 YPE_0900     FALSE 0.087 246.000 0.000 NA   NA
 4587238 4587239 YPE_0900 YPE_0901   tppB FALSE 0.077 255.000 0.000 NA   NA
 4587239 4587240 YPE_0901 YPE_0902 tppB   FALSE 0.017 643.000 0.000 NA   NA
 4587240 4587241 YPE_0902 YPE_0903   sapF FALSE 0.031 390.000 0.000 NA   NA
 4587241 4587242 YPE_0903 YPE_0904 sapF sapD TRUE 0.999 0.000 0.684 0.022 Y NA
 4587242 4587243 YPE_0904 YPE_0905 sapD sapC TRUE 0.999 0.000 0.667 1.000 Y NA
 4587243 4587244 YPE_0905 YPE_0906 sapC sapB TRUE 0.998 -13.000 0.284 0.066 Y NA
 4587244 4587245 YPE_0906 YPE_0907 sapB sapA TRUE 0.992 -3.000 0.264 0.066 N NA
 4587245 4587246 YPE_0907 YPE_0908 sapA   FALSE 0.237 136.000 0.000 NA   NA
 4587247 4587248 YPE_0909 YPE_0910 ryhB2 tnp FALSE 0.227 146.000 0.000 NA   NA
 4587250 4587251 YPE_0912 YPE_0913 pspA pspB TRUE 0.896 162.000 0.739 NA   NA
 4587251 4587252 YPE_0913 YPE_0914 pspB pspC TRUE 0.998 0.000 0.913 NA   NA
 4587252 4587253 YPE_0914 YPE_0915 pspC   FALSE 0.204 308.000 0.190 NA   NA
 4587253 4587254 YPE_0915 YPE_0916     TRUE 0.998 -3.000 0.791 NA   NA
 4587255 4587256 YPE_0917 YPE_0918     TRUE 0.902 62.000 0.412 NA   NA
 4587258 4587259 YPE_0920 YPE_0921 tnp tpx FALSE 0.033 253.000 0.000 1.000 N NA
 4587262 4587263 YPE_0924 YPE_0925 mppA   FALSE 0.022 243.000 0.019 1.000 N NA
 4587264 4587265 YPE_0926 YPE_0927     FALSE 0.020 312.000 0.000 1.000 N NA
 4587265 4587266 YPE_0927 YPE_0928     FALSE 0.023 271.000 0.000 NA N NA
 4587266 4587267 YPE_0928 YPE_0929   nifJ FALSE 0.022 275.000 0.000 NA N NA
 4587271 4587272 YPE_0933 YPE_0934 hslJ ldhA FALSE 0.112 70.000 0.024 NA N NA
 4587273 4587274 YPE_0935 YPE_0936     TRUE 0.893 6.000 0.057 NA   NA
 4587274 4587275 YPE_0936 YPE_0937     TRUE 0.993 10.000 0.726 NA   NA
 4587279 4587280 YPE_0941 YPE_0942 hrpA   FALSE 0.038 354.000 0.000 NA   NA
 4587280 4587281 YPE_0942 YPE_0943     TRUE 0.963 -3.000 0.077 NA   NA
 4587282 4587283 YPE_0944 YPE_0945     FALSE 0.043 334.000 0.000 NA   NA
 4587283 4587284 YPE_0945 YPE_0946     TRUE 0.934 -3.000 0.000 NA   NA
 4587285 4587286 YPE_0947 YPE_0948     TRUE 0.982 26.000 0.676 NA   NA
 4587287 4587288 YPE_0949 YPE_0950     TRUE 0.900 3.000 0.000 NA   NA
 4587290 4587291 YPE_0952 YPE_0953   rstB TRUE 0.719 94.000 0.300 1.000 N NA
 4587291 4587292 YPE_0953 YPE_0954 rstB rstA TRUE 0.972 28.000 0.181 1.000 Y NA
 4587294 4587295 YPE_0956 YPE_0957     FALSE 0.198 270.000 0.143 NA   NA
 4587296 4587297 YPE_0958 YPE_0959   pntA FALSE 0.196 121.000 0.010 NA   NA
 4587297 4587298 YPE_0959 YPE_0960 pntA pntB TRUE 0.991 73.000 0.745 0.001 Y NA
 4587299 4587300 YPE_0961 YPE_0962   fnr TRUE 0.962 135.000 0.619 1.000 Y NA
 4587300 4587301 YPE_0962 YPE_0963 fnr ogt FALSE 0.184 73.000 0.038 1.000 N NA
 4587302 4587303 YPE_0964 YPE_0965 phoA   FALSE 0.019 546.000 0.000 NA   NA
 4587303 4587304 YPE_0965 YPE_0966     TRUE 0.924 0.000 0.000 NA   NA
 4587304 4587305 YPE_0966 YPE_0967     FALSE 0.239 131.000 0.033 NA   NA
 4587306 4587307 YPE_0968 YPE_0969 ilvN   TRUE 0.998 2.000 0.649 0.002   NA
 4587309 4587310 YPE_0971 YPE_0972     TRUE 0.993 -3.000 0.333 NA   NA
 4587310 4587311 YPE_0972 YPE_0973     TRUE 0.943 5.000 0.111 NA   NA
 4587313 4587314 YPE_0975 YPE_0976     TRUE 0.999 4.000 0.520 0.065 Y NA
 4587315 4587316 YPE_0977 YPE_0978     FALSE 0.403 64.000 0.000 NA   NA
 4587316 4587317 YPE_0978 YPE_0979     FALSE 0.253 122.000 0.000 NA   NA
 4587318 4587319 YPE_0980 YPE_0981     FALSE 0.022 483.000 0.000 NA   NA
 4587319 4587320 YPE_0981 YPE_0982     TRUE 0.996 0.000 0.625 NA   NA
 4587320 4587321 YPE_0982 YPE_0983     TRUE 0.992 4.000 0.500 NA   NA
 4587321 4587322 YPE_0983 YPE_0984     TRUE 0.991 13.000 0.714 NA   NA
 4587322 4587323 YPE_0984 YPE_0985     TRUE 0.889 65.000 0.400 NA   NA
 4587323 4587324 YPE_0985 YPE_0986     TRUE 0.996 -3.000 0.500 NA   NA
 4587324 4587325 YPE_0986 YPE_0987     TRUE 0.991 3.000 0.400 NA   NA
 4587325 4587326 YPE_0987 YPE_0988     TRUE 0.960 12.000 0.222 NA   NA
 4587327 4587328 YPE_0989 YPE_0990     FALSE 0.285 97.000 0.000 NA   NA
 4587328 4587329 YPE_0990 YPE_0991     TRUE 0.703 22.000 0.000 NA   NA
 4587329 4587330 YPE_0991 YPE_0992     FALSE 0.034 375.000 0.000 NA   NA
 4587331 4587332 YPE_0993 YPE_0994 ynfK mlc TRUE 0.580 224.000 0.455 1.000 N NA
 4587333 4587335 YPE_4353 YPE_0996 ynfM tus FALSE 0.138 205.000 0.000 NA   NA
 4587337 4587338 YPE_0998 YPE_0999 manA   TRUE 0.781 240.000 0.778 NA   NA
 4587339 4587340 YPE_1000 YPE_1001     FALSE 0.136 206.000 0.000 NA   NA
 4587340 4587341 YPE_1001 YPE_1002     FALSE 0.172 194.000 0.000 1.000   NA
 4587341 4587342 YPE_1002 YPE_1003   araC TRUE 0.721 128.000 0.276 1.000   NA
 4587342 4587343 YPE_1003 YPE_1004 araC araH FALSE 0.312 221.000 0.196 1.000 N NA
 4587343 4587344 YPE_1004 YPE_1005 araH araG TRUE 0.996 18.000 0.451 0.014 Y NA
 4587344 4587345 YPE_1005 YPE_1006 araG araF TRUE 0.988 131.000 0.917 0.014 Y NA
 4587346 4587347 YPE_1007 YPE_1008 araB araA FALSE 0.196 84.000 0.046 1.000 N NA
 4587348 4587349 YPE_1009 YPE_1010     TRUE 0.912 2.000 0.000 NA   NA
 4587349 4587351 YPE_1010 YPE_1011     TRUE 0.676 25.000 0.000 NA   NA
 4587353 4587354 YPE_1012 YPE_1013   rsxA TRUE 0.539 128.000 0.148 NA   NA
 4587354 4587355 YPE_1013 YPE_1014 rsxA rsxB TRUE 0.999 0.000 0.564 0.041 Y NA
 4587355 4587356 YPE_1014 YPE_1015 rsxB rsxC TRUE 0.990 50.000 0.537 0.012 Y NA
 4587358 4587359 YPE_1017 YPE_1018     TRUE 0.999 10.000 0.924 0.041 Y NA
 4587359 4587360 YPE_1018 YPE_1019     TRUE 1.000 -3.000 0.908 0.041 Y NA
 4587360 4587361 YPE_1019 YPE_1020   nth TRUE 0.957 -3.000 0.109 1.000 N NA
 4587362 4587363 YPE_1021 YPE_1022     TRUE 0.944 35.000 0.103 1.000 Y NA
 4587364 4587365 YPE_1023 YPE_1024 rnb cstA FALSE 0.016 350.000 0.000 1.000 N NA
 4587365 4587366 YPE_1024 YPE_1025 cstA   TRUE 0.975 -7.000 0.143 NA   NA
 4587371 4587372 YPE_1030 YPE_1031   pyrF TRUE 0.866 0.000 0.045 1.000 N NA
 4587374 4587375 YPE_1033 YPE_1034     TRUE 0.992 7.000 0.576 1.000   NA
 4587375 4587376 YPE_1034 YPE_1035   pgpB TRUE 0.481 169.000 0.143 1.000   NA
 4587378 4587379 YPE_1037 YPE_1038 acnA   FALSE 0.036 364.000 0.000 NA   NA
 4587379 4587380 YPE_1038 YPE_1039   cysB FALSE 0.042 336.000 0.000 NA   NA
 4587380 4587381 YPE_1039 YPE_1040 cysB topA FALSE 0.005 397.000 0.008 1.000 N NA
 4587381 4587382 YPE_1040 YPE_1041 topA   TRUE 0.656 27.000 0.000 NA   NA
 4587385 4587386 YPE_1044 YPE_1045   btuR TRUE 0.632 17.000 0.050 1.000 N NA
 4587387 4587388 YPE_1046 YPE_1047     FALSE 0.209 425.000 0.075 NA Y NA
 4587388 4587389 YPE_1047 YPE_1048   trpH TRUE 0.957 17.000 0.281 NA   NA
 4587390 4587391 YPE_1049 YPE_1050     TRUE 0.641 29.000 0.000 NA   NA
 4587391 4587392 YPE_1050 YPE_1051   trpE FALSE 0.228 116.000 0.023 NA   NA
 4587392 4587393 YPE_1051 YPE_1052 trpE trpG TRUE 1.000 0.000 0.703 0.002 Y NA
 4587393 4587394 YPE_1052 YPE_1053 trpG trpD TRUE 0.976 12.000 0.083 1.000 Y NA
 4587394 4587395 YPE_1053 YPE_1054 trpD trpC TRUE 0.996 4.000 0.293 1.000 Y NA
 4587395 4587396 YPE_1054 YPE_1055 trpC trpB TRUE 0.927 157.000 0.221 0.001 Y NA
 4587396 4587397 YPE_1055 YPE_1056 trpB trpA TRUE 1.000 0.000 0.947 0.001 Y NA
 4587397 4587398 YPE_1056 YPE_1057 trpA   FALSE 0.032 343.000 0.018 NA   NA
 4587399 4587400 YPE_1058 YPE_1059 ompW   FALSE 0.264 109.000 0.000 NA   NA
 4587404 4587405 YPE_1062 YPE_1063 ispZ   TRUE 0.552 80.000 0.167 NA N NA
 4587405 4587406 YPE_1063 YPE_1064     FALSE 0.088 148.000 0.000 NA N NA
 4587409 4587410 YPE_1067 YPE_1068   ail1 FALSE 0.117 221.000 0.000 NA   NA
 4587411 4587412 YPE_1069 YPE_1070   cls FALSE 0.361 69.000 0.000 NA   NA
 4587412 4587413 YPE_1070 YPE_1071 cls   TRUE 0.622 165.000 0.231 NA   NA
 4587414 4587415 YPE_1072 YPE_1073 oppF oppD TRUE 0.999 -3.000 0.420 0.002 Y NA
 4587415 4587416 YPE_1073 YPE_1074 oppD oppC TRUE 0.996 12.000 0.554 1.000 Y NA
 4587416 4587417 YPE_1074 YPE_1075 oppC oppB TRUE 0.998 19.000 0.870 0.065 Y NA
 4587417 4587418 YPE_1075 YPE_1076 oppB oppA TRUE 0.913 87.000 0.151 0.065 Y NA
 4587418 4587419 YPE_1076 YPE_1077 oppA   FALSE 0.005 838.000 0.000 NA N NA
 4587420 4587421 YPE_1078 YPE_1079 adhE   FALSE 0.008 540.000 0.000 1.000 N NA
 4587421 4587422 YPE_1079 YPE_1080     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4587425 4587426 YPE_1083 YPE_1084     FALSE 0.021 307.000 0.000 1.000 N NA
 4587427 4587428 YPE_1085 YPE_1087   purU FALSE 0.309 84.000 0.000 NA   NA
 4587433 4587434 YPE_1091 YPE_1092 xthA nudG FALSE 0.217 98.000 0.056 1.000 N NA
 4587435 4587436 YPE_1093 YPE_1094   topB TRUE 0.976 -3.000 0.123 NA   NA
 4587436 4587437 YPE_1094 YPE_1095 topB selD FALSE 0.273 59.000 0.041 1.000 N NA
 4587437 4587438 YPE_1095 YPE_1096 selD   FALSE 0.044 225.000 0.033 1.000 N NA
 4587439 4587440 YPE_1097 YPE_1098 sppA ansA FALSE 0.360 117.000 0.113 1.000 N NA
 4587440 4587441 YPE_1098 YPE_1099 ansA pncA TRUE 0.599 15.000 0.040 1.000 N NA
 4587442 4587443 YPE_1100 YPE_1101   msrB TRUE 0.751 71.000 0.216 NA   NA
 4587444 4587445 YPE_1102 YPE_1103 gapA   TRUE 0.452 314.000 0.154 1.000 Y NA
 4587447 4587448 YPE_1105 YPE_1106     TRUE 0.889 150.000 0.683 NA   NA
 4587448 4587449 YPE_1106 YPE_1107     FALSE 0.203 105.000 0.007 NA   NA
 4587451 4587452 YPE_1109 YPE_1110     FALSE 0.075 265.000 0.000 1.000   NA
 4587456 4587457 YPE_1114 YPE_1115 nhaB dsbB TRUE 0.718 236.000 0.723 1.000 N NA
 4587459 4587460 YPE_1117 YPE_1118     TRUE 0.696 17.000 0.019 NA   NA
 4587460 4587461 YPE_1118 YPE_1119     TRUE 0.857 4.000 0.019 NA   NA
 4587461 4587462 YPE_1119 YPE_1120     FALSE 0.052 305.000 0.000 NA   NA
 4587463 4587464 YPE_1121 YPE_1122     TRUE 0.934 -3.000 0.000 NA   NA
 4587464 4587465 YPE_1122 YPE_1123     TRUE 0.811 11.000 0.000 NA   NA
 4587465 4587466 YPE_1123 YPE_1124     TRUE 0.742 17.000 0.000 NA   NA
 4587466 4587467 YPE_1124 YPE_1125     TRUE 0.992 0.000 0.333 NA   NA
 4587469 4587470 YPE_1127 YPE_1128     TRUE 0.457 56.000 0.000 NA   NA
 4587470 4587471 YPE_1128 YPE_1129     TRUE 0.837 8.000 0.000 NA   NA
 4587471 4587472 YPE_1129 YPE_1130     FALSE 0.280 99.000 0.000 NA   NA
 4587474 4587475 YPE_1132 YPE_1133     FALSE 0.072 261.000 0.000 NA   NA
 4587475 4587476 YPE_1133 YPE_1134     TRUE 0.996 3.000 0.714 NA   NA
 4587476 4587477 YPE_1134 YPE_1135   tnp FALSE 0.254 121.000 0.000 NA   NA
 4587477 4587478 YPE_1135 YPE_1136 tnp   FALSE 0.052 305.000 0.000 NA   NA
 4587478 4587479 YPE_1136 YPE_1137     TRUE 0.961 3.000 0.120 NA   NA
 4587479 4587480 YPE_1137 YPE_1138     TRUE 0.960 1.000 0.094 NA   NA
 4587480 4587481 YPE_1138 YPE_1139     TRUE 0.890 87.000 0.531 NA   NA
 4587481 4587482 YPE_1139 YPE_1140     TRUE 0.906 13.000 0.111 NA   NA
 4587482 4587483 YPE_1140 YPE_1141     TRUE 0.884 66.000 0.400 NA   NA
 4587483 4587484 YPE_1141 YPE_1142     TRUE 0.992 -3.000 0.294 NA   NA
 4587484 4587485 YPE_1142 YPE_1143     TRUE 0.985 2.000 0.235 NA   NA
 4587485 4587486 YPE_1143 YPE_1144     TRUE 0.912 2.000 0.000 NA   NA
 4587486 4587487 YPE_1144 YPE_1145     TRUE 0.934 -3.000 0.000 NA   NA
 4587487 4587488 YPE_1145 YPE_1146     TRUE 0.986 0.000 0.222 NA   NA
 4587488 4587489 YPE_1146 YPE_1147     TRUE 0.994 14.000 1.000 NA   NA
 4587489 4587490 YPE_1147 YPE_1148     TRUE 0.946 122.000 1.000 NA   NA
 4587490 4587493 YPE_1148 YPE_1149     FALSE 0.013 1389.000 0.000 NA   NA
 4587491 4587494 YPE_1150 YPE_1151     TRUE 0.526 44.000 0.000 NA   NA
 4587493 4587491 YPE_1149 YPE_1150     TRUE 0.889 -935.000 0.000 NA   NA
 4587494 4587495 YPE_1151 YPE_1153     FALSE 0.017 636.000 0.000 NA   NA
 4587495 4587496 YPE_1153 YPE_1154     TRUE 0.977 31.000 0.667 NA   NA
 4587496 4587497 YPE_1154 YPE_1155     FALSE 0.027 457.000 0.000 1.000   NA
 4587497 4587498 YPE_1155 YPE_1156   rzpR FALSE 0.026 462.000 0.000 1.000   NA
 4587498 4587499 YPE_1156 YPE_1157 rzpR   TRUE 0.907 -15.000 0.000 1.000   NA
 4587499 4587500 YPE_1157 YPE_1158     TRUE 0.622 31.000 0.000 NA   NA
 4587504 4587505 YPE_1162 YPE_1163     TRUE 0.498 49.000 0.000 NA   NA
 4587505 4587506 YPE_1163 YPE_1164     TRUE 0.882 4.000 0.000 NA   NA
 4587506 4587507 YPE_1164 YPE_1165     TRUE 0.916 1.000 0.000 NA   NA
 4587507 4587508 YPE_1165 YPE_1166   ninB FALSE 0.335 74.000 0.000 NA   NA
 4587509 4587510 YPE_1167 YPE_1168     TRUE 0.727 19.000 0.000 NA   NA
 4587510 4587511 YPE_1168 YPE_1169     FALSE 0.324 78.000 0.000 NA   NA
 4587511 4587512 YPE_1169 YPE_1170     TRUE 0.641 29.000 0.000 NA   NA
 4587514 4587515 YPE_1171 YPE_1172     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4587515 4587516 YPE_1172 YPE_1173     FALSE 0.013 1335.000 0.000 NA   NA
 4587516 4587517 YPE_1173 YPE_1174     TRUE 0.434 103.000 0.088 NA   NA
 4587517 4587518 YPE_1174 YPE_1175     FALSE 0.206 71.000 0.046 NA N NA
 4587518 4587519 YPE_1175 YPE_1176     TRUE 0.767 141.000 0.363 NA   NA
 4587520 4587521 YPE_1177 YPE_1178   minC FALSE 0.027 426.000 0.000 NA   NA
 4587521 4587522 YPE_1178 YPE_1179 minC minD TRUE 0.991 25.000 0.466 1.000 Y NA
 4587522 4587523 YPE_1179 YPE_1180 minD minE TRUE 0.998 4.000 0.618 NA Y NA
 4587524 4587525 YPE_1181 YPE_1182 rnd fadD FALSE 0.313 160.000 0.115 1.000 N NA
 4587525 4587526 YPE_1182 YPE_1183 fadD   FALSE 0.047 643.000 0.169 1.000 N NA
 4587526 4587527 YPE_1183 YPE_1184     FALSE 0.074 155.000 0.024 1.000 N NA
 4587527 4587528 YPE_1184 YPE_1185     FALSE 0.369 72.000 0.082 1.000 N NA
 4587530 4587531 YPE_1187 YPE_1188     TRUE 0.998 20.000 0.869 0.077 Y NA
 4587531 4587532 YPE_1188 YPE_1189   eda FALSE 0.006 694.000 0.000 1.000 N NA
 4587532 4587533 YPE_1189 YPE_1190 eda zwf TRUE 0.422 242.000 0.034 1.000 Y NA
 4587534 4587535 YPE_1191 YPE_1192 hexR pykA FALSE 0.018 330.000 0.000 1.000 N NA
 4587536 4587537 YPE_1193 YPE_1194 lpxM   FALSE 0.313 267.000 0.299 1.000 N NA
 4587537 4587538 YPE_1194 YPE_1195   znuA TRUE 0.480 84.000 0.131 1.000 N NA
 4587539 4587540 YPE_1196 YPE_1197 znuC znuB TRUE 0.999 -3.000 0.755 1.000 Y NA
 4587541 4587542 YPE_1198 YPE_1199 ruvB ruvA TRUE 0.973 162.000 0.549 0.001 Y NA
 4587542 4587543 YPE_1199 YPE_1200 ruvA ruvC TRUE 0.849 283.000 0.451 0.010 Y NA
 4587543 4587544 YPE_1200 YPE_1201 ruvC   TRUE 0.546 209.000 0.277 1.000   NA
 4587544 4587545 YPE_1201 YPE_1202   nudB TRUE 0.467 58.000 0.035 1.000   NA
 4587545 4587546 YPE_1202 YPE_1203 nudB aspS TRUE 0.881 0.000 0.050 1.000 N NA
 4587547 4587548 YPE_1204 YPE_1205     TRUE 0.406 180.000 0.126 NA   NA
 4587548 4587549 YPE_1205 YPE_1206     FALSE 0.293 191.000 0.089 NA   NA
 4587549 4587550 YPE_1206 YPE_1207     TRUE 0.992 -3.000 0.315 NA   NA
 4587551 4587552 YPE_1208 YPE_1209 cutC   FALSE 0.138 232.000 0.057 NA   NA
 4587554 4587555 YPE_1211 YPE_1212     TRUE 0.997 30.000 1.000 NA Y NA
 4587555 4587556 YPE_1212 YPE_1213   mviN FALSE 0.023 476.000 0.000 NA   NA
 4587556 4587557 YPE_1213 YPE_1214 mviN   FALSE 0.063 267.000 0.022 1.000   NA
 4587557 4587558 YPE_1214 YPE_1215   rimJ TRUE 0.847 8.000 0.000 1.000   NA
 4587559 4587560 YPE_1216 YPE_1217     FALSE 0.134 395.000 0.196 NA   NA
 4587561 4587562 YPE_1218 YPE_1219 ycdY   TRUE 0.948 37.000 0.417 1.000   NA
 4587564 4587565 YPE_1221 YPE_1222     TRUE 0.966 14.000 0.375 NA N NA
 4587566 4587568 YPE_1224 YPE_1223     TRUE 0.889 -322.000 0.000 NA   NA
 4587570 4587571 YPE_1226 YPE_1227     TRUE 0.999 -3.000 0.440 0.063 Y NA
 4587571 4587572 YPE_1227 YPE_1228     TRUE 0.984 20.000 0.480 0.063   NA
 4587572 4587573 YPE_1228 YPE_1229     FALSE 0.057 301.000 0.000 1.000   NA
 4587573 4587574 YPE_1229 YPE_1230     FALSE 0.230 142.000 0.000 NA   NA
 4587574 4587575 YPE_1230 YPE_1231     FALSE 0.053 301.000 0.000 NA   NA
 4587575 4587576 YPE_1231 YPE_1233     FALSE 0.013 1598.000 0.000 NA   NA
 4587576 4587577 YPE_1233 YPE_1234     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4587578 4587579 YPE_1235 YPE_1236 tnp kdsA FALSE 0.009 482.000 0.000 1.000 N NA
 4587579 4587580 YPE_1236 YPE_1237 kdsA   TRUE 0.471 96.000 0.089 1.000   NA
 4587580 4587581 YPE_1237 YPE_1238     TRUE 0.986 -3.000 0.195 NA   NA
 4587581 4587582 YPE_1238 YPE_1239   prmC TRUE 0.631 64.000 0.109 NA   NA
 4587582 4587583 YPE_1239 YPE_1240 prmC prfA TRUE 0.998 0.000 0.229 0.045 Y NA
 4587583 4587584 YPE_1240 YPE_1241 prfA hemA TRUE 0.890 33.000 0.171 0.045 N NA
 4587585 4587586 YPE_1242 YPE_1243   ipk TRUE 0.964 2.000 0.157 1.000 N NA
 4587586 4587587 YPE_1243 YPE_1244 ipk prsA FALSE 0.027 341.000 0.053 1.000 N NA
 4587589 4587590 YPE_1246 YPE_1247 pth ychF TRUE 0.836 164.000 0.184 1.000 Y NA
 4587590 4587591 YPE_1247 YPE_1248 ychF   FALSE 0.055 297.000 0.000 NA   NA
 4587591 4587592 YPE_1248 YPE_1249     TRUE 0.977 18.000 0.476 NA   NA
 4587593 4587594 YPE_1250 YPE_1251     TRUE 0.624 8.000 0.034 NA N NA
 4587594 4587595 YPE_1251 YPE_1252     TRUE 0.934 -3.000 0.000 NA   NA
 4587597 4587598 YPE_1254 YPE_1255     TRUE 0.912 15.000 0.133 NA   NA
 4587598 4587599 YPE_1255 YPE_1256     FALSE 0.225 149.000 0.000 NA   NA
 4587600 4587601 YPE_1257 YPE_1258 copR   TRUE 0.999 6.000 0.793 0.001 Y NA
 4587601 4587602 YPE_1258 YPE_1259     FALSE 0.069 277.000 0.000 1.000   NA
 4587602 4587603 YPE_1259 YPE_1260     TRUE 0.773 55.000 0.154 1.000   NA
 4587603 4587604 YPE_1260 YPE_1261     FALSE 0.126 213.000 0.000 NA   NA
 4587604 4587605 YPE_1261 YPE_1262     FALSE 0.015 791.000 0.000 NA   NA
 4587605 4587606 YPE_1262 YPE_1263     TRUE 0.854 6.000 0.000 NA   NA
 4587606 4587607 YPE_1263 YPE_1264     TRUE 0.902 -13.000 0.000 NA   NA
 4587607 4587608 YPE_1264 YPE_1265     FALSE 0.041 341.000 0.000 NA   NA
 4587608 4587609 YPE_1265 YPE_1266     TRUE 0.474 105.000 0.000 0.046   NA
 4587610 4587611 YPE_1267 YPE_1268     FALSE 0.091 247.000 0.000 1.000   NA
 4587614 4587615 YPE_1271 YPE_1272     FALSE 0.203 170.000 0.000 NA   NA
 4587616 4587617 YPE_1273 YPE_1274     TRUE 0.983 -3.000 0.167 NA   NA
 4587617 4587618 YPE_1274 YPE_1275     TRUE 0.934 -3.000 0.000 NA   NA
 4587618 4587619 YPE_1275 YPE_1276     TRUE 0.930 0.000 0.000 1.000   NA
 4587619 4587620 YPE_1276 YPE_1277     FALSE 0.159 134.000 0.054 NA N NA
 4587620 4587621 YPE_1277 YPE_1278     TRUE 0.996 -3.000 0.550 NA   NA
 4587621 4587622 YPE_1278 YPE_1279     TRUE 0.974 -7.000 0.133 1.000   NA
 4587622 4587623 YPE_1279 YPE_1280     TRUE 0.776 14.000 0.000 NA   NA
 4587626 4587627 YPE_1283 YPE_1284     TRUE 0.951 0.000 0.067 NA   NA
 4587628 4587629 YPE_1285 YPE_1286 hutC hutI FALSE 0.028 204.000 0.010 1.000 N NA
 4587629 4587630 YPE_1286 YPE_1287 hutI hutG TRUE 0.831 -3.000 0.031 1.000 N NA
 4587631 4587633 YPE_1288 YPE_1289   astE FALSE 0.012 3571.000 0.000 NA   NA
 4587633 4587634 YPE_1289 YPE_1290 astE astB TRUE 0.868 61.000 0.063 1.000 Y NA
 4587634 4587635 YPE_1290 YPE_1291 astB astD TRUE 0.933 24.000 0.306 1.000 N NA
 4587635 4587636 YPE_1291 YPE_1292 astD astA TRUE 0.897 -3.000 0.051 1.000 N NA
 4587636 4587637 YPE_1292 YPE_1293 astA astC TRUE 0.987 30.000 0.400 1.000 Y NA
 4587637 4587638 YPE_1293 YPE_1294 astC   FALSE 0.154 198.000 0.000 NA   NA
 4587638 4587639 YPE_1294 YPE_1295     FALSE 0.099 236.000 0.000 NA   NA
 4587640 4587641 YPE_1296 YPE_1297 narX chaA FALSE 0.024 549.000 0.000 0.077 N NA
 4587642 4587643 YPE_1298 YPE_1299 phoH   TRUE 0.544 60.000 0.065 NA   NA
 4587643 4587644 YPE_1299 YPE_1300     FALSE 0.026 439.000 0.000 NA   NA
 4587644 4587645 YPE_1300 YPE_1301   hmsS FALSE 0.043 333.000 0.000 NA   NA
 4587645 4587646 YPE_1301 YPE_1302 hmsS hmsR TRUE 0.981 -3.000 0.154 NA   NA
 4587646 4587647 YPE_1302 YPE_1303 hmsR hmsF TRUE 0.921 -10.000 0.087 1.000 N NA
 4587647 4587648 YPE_1303 YPE_1304 hmsF hmsH TRUE 0.991 13.000 0.696 1.000   NA
 4587648 4587649 YPE_1304 YPE_1305 hmsH pepP1 FALSE 0.018 669.000 0.000 1.000   NA
 4587649 4587650 YPE_1305 YPE_1306 pepP1   FALSE 0.221 141.000 0.071 1.000 N NA
 4587650 4587651 YPE_1306 YPE_1307     FALSE 0.188 173.000 0.071 1.000 N NA
 4587651 4587652 YPE_1307 YPE_1308     TRUE 0.986 0.000 0.176 0.012 N NA
 4587652 4587653 YPE_1308 YPE_1309     TRUE 0.912 -10.000 0.078 1.000 N NA
 4587653 4587654 YPE_1309 YPE_1310     TRUE 0.955 4.000 0.175 NA N NA
 4587654 4587655 YPE_1310 YPE_1311     TRUE 0.997 -10.000 0.878 NA N NA
 4587655 4587656 YPE_1311 YPE_1312     TRUE 0.995 3.000 0.625 NA   NA
 4587656 4587657 YPE_1312 YPE_1313     FALSE 0.398 301.000 0.386 NA   NA
 4587657 4587658 YPE_1313 YPE_1314     TRUE 0.695 204.000 0.133 NA Y NA
 4587658 4587659 YPE_1314 YPE_1315     FALSE 0.007 581.000 0.000 1.000 N NA
 4587659 4587660 YPE_1315 YPE_1316     FALSE 0.102 111.000 0.028 1.000 N NA
 4587661 4587662 YPE_1317 YPE_1318     FALSE 0.006 725.000 0.000 1.000 N NA
 4587666 4587667 YPE_1322 YPE_1323     TRUE 0.894 66.000 0.417 1.000   NA
 4587667 4587668 YPE_1323 YPE_1324     FALSE 0.119 220.000 0.000 NA   NA
 4587668 4587669 YPE_1324 YPE_1325     TRUE 0.676 25.000 0.000 NA   NA
 4587671 4587672 YPE_1327 YPE_1328   ripB TRUE 0.916 65.000 0.600 1.000 N NA
 4587672 4587673 YPE_1328 YPE_1329 ripB ripA TRUE 0.957 23.000 0.417 1.000 N NA
 4587673 4587674 YPE_1329 YPE_1330 ripA fimZ FALSE 0.006 826.000 0.000 1.000 N NA
 4587674 4587675 YPE_1330 YPE_1332 fimZ   FALSE 0.282 98.000 0.000 NA   NA
 4587675 4587677 YPE_1332 YPE_1333     FALSE 0.021 513.000 0.000 NA   NA
 4587677 4587678 YPE_1333 YPE_1334     TRUE 0.871 93.000 0.154 1.000 Y NA
 4587678 4587679 YPE_1334 YPE_1335     TRUE 0.983 49.000 0.500 1.000 Y NA
 4587679 4587680 YPE_1335 YPE_1336     TRUE 0.988 16.000 0.667 NA   NA
 4587680 4587681 YPE_1336 YPE_1337     TRUE 0.993 -3.000 0.333 NA   NA
 4587681 4587682 YPE_1337 YPE_1338     FALSE 0.052 303.000 0.000 NA   NA
 4587682 4587683 YPE_1338 YPE_1339     FALSE 0.213 162.000 0.000 NA   NA
 4587684 4587685 YPE_1340 YPE_1341 ybtS ybtX TRUE 0.842 28.000 0.176 NA N NA
 4587685 4587686 YPE_1341 YPE_1342 ybtX ybtQ TRUE 0.956 -7.000 0.130 NA N NA
 4587686 4587687 YPE_1342 YPE_1343 ybtQ ybtP TRUE 1.000 -13.000 0.913 0.006 Y NA
 4587688 4587689 YPE_1344 YPE_1345 ybtA irp2 TRUE 0.591 191.000 0.333 1.000 N NA
 4587689 4587690 YPE_1345 YPE_1346 irp2 irp1 TRUE 0.932 88.000 0.158 0.002 Y NA
 4587690 4587691 YPE_1346 YPE_1347 irp1 ybtU TRUE 0.999 -3.000 0.333 0.020 Y NA
 4587691 4587692 YPE_1347 YPE_1348 ybtU ybtT TRUE 0.998 -3.000 0.406 1.000 Y NA
 4587692 4587693 YPE_1348 YPE_1349 ybtT ybtE TRUE 0.988 4.000 0.094 1.000 Y NA
 4587693 4587694 YPE_1349 YPE_1350 ybtE fyuA FALSE 0.378 131.000 0.125 1.000 N NA
 4587694 4587695 YPE_1350 YPE_1351 fyuA   FALSE 0.014 873.000 0.000 NA   NA
 4587695 4587696 YPE_1351 YPE_1352     TRUE 0.837 8.000 0.000 NA   NA
 4587696 4587697 YPE_1352 YPE_1353   hef TRUE 0.526 44.000 0.000 NA   NA
 4587697 4587698 YPE_1353 YPE_1354 hef   TRUE 0.727 19.000 0.000 NA   NA
 4587698 4587699 YPE_1354 YPE_1355     TRUE 0.990 6.000 0.500 NA   NA
 4587700 4587701 YPE_1356 YPE_1357     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4587702 4587703 YPE_1358 YPE_1359     FALSE 0.161 194.000 0.000 NA   NA
 4587703 4587704 YPE_1359 YPE_1360     TRUE 0.752 16.000 0.000 NA   NA
 4587705 4587706 YPE_1361 YPE_1362     TRUE 0.937 25.000 0.000 1.000 Y NA
 4587706 4587707 YPE_1362 YPE_1363     TRUE 0.992 -7.000 0.000 0.063 Y NA
 4587707 4587708 YPE_1363 YPE_1364     TRUE 0.872 67.000 0.000 0.063 Y NA
 4587708 4587709 YPE_1364 YPE_1365     TRUE 0.651 30.000 0.000 1.000   NA
 4587711 4587712 YPE_1367 YPE_1368     FALSE 0.172 187.000 0.000 NA   NA
 4587714 4587715 YPE_1369 YPE_1370     TRUE 0.800 12.000 0.000 NA   NA
 4587716 4587718 YPE_1371 YPE_1373     FALSE 0.346 72.000 0.000 NA   NA
 4587718 4587720 YPE_1373 YPE_1374     FALSE 0.385 66.000 0.000 NA   NA
 4587721 4587722 YPE_1375 YPE_1376     TRUE 0.999 -3.000 1.000 NA   NA
 4587722 4587723 YPE_1376 YPE_1377     TRUE 0.742 17.000 0.000 NA   NA
 4587723 4587724 YPE_1377 YPE_1378     FALSE 0.026 435.000 0.000 NA   NA
 4587724 4587725 YPE_1378 YPE_1379     TRUE 0.934 -3.000 0.000 NA   NA
 4587725 4587726 YPE_1379 YPE_1380     TRUE 0.866 5.000 0.000 NA   NA
 4587726 4587727 YPE_1380 YPE_1382     FALSE 0.209 165.000 0.000 NA   NA
 4587727 4587729 YPE_1382 YPE_1383     FALSE 0.273 102.000 0.000 NA   NA
 4587729 4587730 YPE_1383 YPE_1384   tnpA TRUE 0.934 72.000 0.521 0.087   NA
 4587730 4587731 YPE_1384 YPE_1385 tnpA   FALSE 0.119 220.000 0.000 NA   NA
 4587732 4587733 YPE_1386 YPE_1388     FALSE 0.035 369.000 0.000 NA   NA
 4587736 4587737 YPE_1390 YPE_1391     TRUE 0.811 11.000 0.000 NA   NA
 4587737 4587738 YPE_1391 YPE_1392     TRUE 0.477 53.000 0.000 NA   NA
 4587738 4587739 YPE_1392 YPE_1393   pgsA FALSE 0.227 145.000 0.000 NA   NA
 4587739 4587740 YPE_1393 YPE_1394 pgsA uvrC TRUE 0.772 59.000 0.227 1.000 N NA
 4587740 4587741 YPE_1394 YPE_1395 uvrC uvrY TRUE 0.967 -7.000 0.086 0.031 N NA
 4587742 4587743 YPE_1396 YPE_1397     FALSE 0.393 128.000 0.085 NA   NA
 4587746 4587747 YPE_1400 YPE_1401 ail3   FALSE 0.016 687.000 0.000 NA   NA
 4587751 4587752 YPE_1405 YPE_1406     TRUE 0.994 11.000 0.378 NA Y NA
 4587752 4587753 YPE_1406 YPE_1407     TRUE 0.985 30.000 0.356 NA Y NA
 4587753 4587754 YPE_1407 YPE_1408   putP FALSE 0.017 333.000 0.000 1.000 N NA
 4587754 4587755 YPE_1408 YPE_1409 putP   TRUE 0.633 30.000 0.000 NA   NA
 4587756 4587757 YPE_1410 YPE_1411 putA   FALSE 0.024 464.000 0.000 NA   NA
 4587757 4587758 YPE_1411 YPE_1412     TRUE 0.692 34.000 0.061 NA   NA
 4587759 4587760 YPE_1413 YPE_1414     TRUE 0.996 3.000 0.150 0.004 Y NA
 4587760 4587761 YPE_1414 YPE_1415   fliY TRUE 0.995 0.000 0.100 0.078 Y NA
 4587761 4587762 YPE_1415 YPE_1416 fliY dcyD TRUE 0.948 124.000 0.469 1.000 Y NA
 4587762 4587763 YPE_1416 YPE_1417 dcyD fliZ FALSE 0.092 289.000 0.062 1.000   NA
 4587763 4587764 YPE_1417 YPE_1418 fliZ fliA FALSE 0.256 222.000 0.108 1.000   NA
 4587764 4587765 YPE_1418 YPE_1419 fliA fliC FALSE 0.016 347.000 0.000 1.000 N NA
 4587766 4587767 YPE_1420 YPE_1421 fliD fliS TRUE 0.996 11.000 0.284 0.004 Y NA
 4587767 4587768 YPE_1421 YPE_1422 fliS fliT TRUE 0.977 11.000 0.324 1.000   NA
 4587768 4587769 YPE_1422 YPE_1423 fliT   TRUE 0.464 55.000 0.000 NA   NA
 4587769 4587770 YPE_1423 YPE_1424     TRUE 0.844 7.000 0.000 NA   NA
 4587770 4587771 YPE_1424 YPE_1426     FALSE 0.038 354.000 0.000 NA   NA
 4587771 4587773 YPE_1426 YPE_1427     FALSE 0.214 161.000 0.000 NA   NA
 4587774 4587775 YPE_1428 YPE_1429     TRUE 0.759 11.000 0.013 NA   NA
 4587775 4587776 YPE_1429 YPE_1430   fliE FALSE 0.056 294.000 0.000 NA   NA
 4587777 4587778 YPE_1431 YPE_1432 fliF fliG TRUE 0.998 -3.000 0.220 0.010 Y NA
 4587778 4587779 YPE_1432 YPE_1433 fliG fliH TRUE 0.992 -7.000 0.007 0.006 Y NA
 4587779 4587780 YPE_1433 YPE_1434 fliH fliI TRUE 0.995 -37.000 0.115 0.006 Y NA
 4587780 4587781 YPE_1434 YPE_1435 fliI fliJ TRUE 0.862 100.000 0.073 0.013 Y NA
 4587781 4587782 YPE_1435 YPE_1436 fliJ fliK TRUE 0.999 -3.000 0.317 0.010 Y NA
 4587782 4587783 YPE_1436 YPE_1437 fliK fliL TRUE 0.487 267.000 0.119 1.000 Y NA
 4587783 4587784 YPE_1437 YPE_1438 fliL fliM TRUE 0.999 6.000 0.957 0.002 Y NA
 4587784 4587785 YPE_1438 YPE_1439 fliM fliN TRUE 0.998 -3.000 0.137 0.002 Y NA
 4587785 4587786 YPE_1439 YPE_1440 fliN fliO TRUE 0.929 168.000 0.443 1.000 Y NA
 4587786 4587787 YPE_1440 YPE_1441 fliO fliP TRUE 0.997 -3.000 0.203 1.000 Y NA
 4587787 4587788 YPE_1441 YPE_1442 fliP fliQ TRUE 0.987 106.000 0.827 0.013 Y NA
 4587788 4587789 YPE_1442 YPE_1443 fliQ fliR TRUE 0.994 3.000 0.069 0.003 Y NA
 4587789 4587790 YPE_1443 YPE_1444 fliR   TRUE 0.944 21.000 0.000 NA Y NA
 4587790 4587791 YPE_1444 YPE_1445     TRUE 0.520 45.000 0.000 NA   NA
 4587792 4587793 YPE_1446 YPE_1447     TRUE 0.873 49.000 0.000 NA Y NA
 4587793 4587794 YPE_1447 YPE_1448     TRUE 0.951 96.000 0.286 0.014 Y NA
 4587794 4587795 YPE_1448 YPE_1449     TRUE 0.813 66.000 0.000 NA Y NA
 4587795 4587796 YPE_1449 YPE_1450     TRUE 0.995 43.000 1.000 NA Y NA
 4587796 4587797 YPE_1450 YPE_1451     FALSE 0.240 148.000 0.000 1.000   NA
 4587799 4587800 YPE_1453 YPE_1454 flgL flgK TRUE 0.897 139.000 0.142 0.002 Y NA
 4587800 4587801 YPE_1454 YPE_1455 flgK flgJ TRUE 0.717 871.000 0.705 0.004 Y NA
 4587801 4587802 YPE_1455 YPE_1456 flgJ flgI TRUE 0.994 0.000 0.048 0.013 Y NA
 4587802 4587803 YPE_1456 YPE_1457 flgI flgH TRUE 0.983 15.000 0.085 0.013 Y NA
 4587803 4587804 YPE_1457 YPE_1458 flgH flgG TRUE 0.893 144.000 0.268 1.000 Y NA
 4587804 4587805 YPE_1458 YPE_1459 flgG flgF TRUE 0.999 -19.000 0.420 0.001 Y NA
 4587805 4587806 YPE_1459 YPE_1460 flgF flgE TRUE 0.979 22.000 0.095 0.007 Y NA
 4587806 4587807 YPE_1460 YPE_1461 flgE flgD TRUE 0.542 202.000 0.000 NA Y NA
 4587807 4587808 YPE_1461 YPE_1462 flgD flgC TRUE 0.984 15.000 0.186 NA Y NA
 4587808 4587809 YPE_1462 YPE_1463 flgC flgB TRUE 0.999 6.000 0.824 0.006 Y NA
 4587810 4587811 YPE_1464 YPE_1465 flgA flgM TRUE 0.908 151.000 0.330 NA Y NA
 4587811 4587812 YPE_1465 YPE_1466 flgM flgN TRUE 0.995 19.000 0.361 0.003 Y NA
 4587813 4587814 YPE_1467 YPE_1469 tnp flhE FALSE 0.014 1658.000 0.000 1.000   NA
 4587814 4587815 YPE_1469 YPE_1470 flhE flhA TRUE 0.978 0.000 0.053 0.003   NA
 4587815 4587816 YPE_1470 YPE_1471 flhA flhB TRUE 0.998 0.000 0.287 0.013 Y NA
 4587817 4587818 YPE_1472 YPE_1473     TRUE 0.998 -6.000 0.800 NA   NA
 4587821 4587822 YPE_1476 YPE_1477 ryeB   FALSE 0.213 162.000 0.000 NA   NA
 4587822 4587823 YPE_1477 YPE_1478     TRUE 0.930 82.000 0.704 NA   NA
 4587823 4587824 YPE_1478 YPE_1479     TRUE 0.995 3.000 0.613 1.000   NA
 4587824 4587825 YPE_1479 YPE_1480   ftn FALSE 0.032 388.000 0.029 1.000   NA
 4587827 4587828 YPE_1482 YPE_1483 pip ptrB FALSE 0.038 722.000 0.000 0.023   NA
 4587828 4587829 YPE_1483 YPE_1484 ptrB   FALSE 0.050 310.000 0.000 NA   NA
 4587829 4587830 YPE_1484 YPE_1485     FALSE 0.342 92.000 0.048 NA   NA
 4587830 4587831 YPE_1485 YPE_1486     TRUE 0.623 40.000 0.053 NA   NA
 4587831 4587832 YPE_1486 YPE_1487   dbpA FALSE 0.234 94.000 0.014 NA   NA
 4587835 4587836 YPE_1490 YPE_1491     TRUE 0.975 -3.000 0.116 1.000   NA
 4587836 4587837 YPE_1491 YPE_1492     FALSE 0.174 708.000 0.409 1.000   NA
 4587838 4587839 YPE_1493 YPE_1494 hpaC hpaB TRUE 0.971 21.000 0.226 0.001   NA
 4587839 4587840 YPE_1494 YPE_1495 hpaB hpaX FALSE 0.187 68.000 0.000 1.000 N NA
 4587840 4587841 YPE_1495 YPE_1496 hpaX hpaI TRUE 0.973 26.000 0.175 1.000 Y NA
 4587841 4587842 YPE_1496 YPE_1497 hpaI hpaH TRUE 0.978 11.000 0.439 1.000 N NA
 4587842 4587843 YPE_1497 YPE_1498 hpaH hpaF TRUE 0.986 -6.000 0.282 1.000 N NA
 4587843 4587844 YPE_1498 YPE_1499 hpaF hpaD TRUE 0.954 25.000 0.330 1.000   NA
 4587844 4587845 YPE_1499 YPE_1500 hpaD hpaE TRUE 0.804 119.000 0.378 1.000   NA
 4587845 4587846 YPE_1500 YPE_1502 hpaE hpaG TRUE 0.934 -3.000 0.000 NA   NA
 4587850 4587851 YPE_1506 YPE_1507 manX manY TRUE 0.871 92.000 0.064 0.008 Y NA
 4587851 4587852 YPE_1507 YPE_1508 manY manZ TRUE 0.999 7.000 0.939 0.008 Y NA
 4587852 4587853 YPE_1508 YPE_1509 manZ   TRUE 0.854 200.000 0.755 NA   NA
 4587853 4587854 YPE_1509 YPE_1510     FALSE 0.027 429.000 0.000 NA   NA
 4587856 4587857 YPE_1512 YPE_1513     FALSE 0.115 222.000 0.000 NA   NA
 4587860 4587861 YPE_1516 YPE_1517     TRUE 0.901 43.000 0.286 NA   NA
 4587863 4587864 YPE_1519 YPE_1520     TRUE 0.594 237.000 0.429 NA   NA
 4587864 4587865 YPE_1520 YPE_1521     TRUE 0.939 43.000 0.429 NA   NA
 4587865 4587866 YPE_1521 YPE_1522     FALSE 0.184 263.000 0.125 NA   NA
 4587871 4587872 YPE_1527 YPE_1528     FALSE 0.085 103.000 0.021 1.000 N NA
 4587872 4587873 YPE_1528 YPE_1529     FALSE 0.097 237.000 0.000 NA   NA
 4587873 4587874 YPE_1529 YPE_1530     FALSE 0.031 390.000 0.000 NA   NA
 4587874 4587875 YPE_1530 YPE_1531     FALSE 0.189 178.000 0.000 NA   NA
 4587876 4587878 YPE_1532 YPE_1533     FALSE 0.346 72.000 0.000 NA   NA
 4587878 4587879 YPE_1533 YPE_1534     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4587881 4587882 YPE_1537 YPE_1538 kduI kduD TRUE 0.588 92.000 0.192 1.000 N NA
 4587882 4587883 YPE_1538 YPE_1539 kduD kdgC FALSE 0.046 336.000 0.000 1.000   NA
 4587883 4587884 YPE_1539 YPE_1540 kdgC   TRUE 0.875 41.000 0.217 1.000   NA
 4587884 4587885 YPE_1540 YPE_1541     TRUE 1.000 -7.000 0.917 0.062 Y NA
 4587885 4587886 YPE_1541 YPE_1542     TRUE 0.987 14.000 0.131 0.062 Y NA
 4587886 4587887 YPE_1542 YPE_1543     TRUE 0.982 16.000 0.101 0.062 Y NA
 4587887 4587888 YPE_1543 YPE_1544     FALSE 0.120 298.000 0.000 0.062   NA
 4587888 4587889 YPE_1544 YPE_1545   ydjM FALSE 0.022 480.000 0.000 NA   NA
 4587889 4587890 YPE_1545 YPE_1546 ydjM ydjN FALSE 0.278 204.000 0.102 NA   NA
 4587891 4587892 YPE_1547 YPE_1548   kdgR FALSE 0.013 385.000 0.000 1.000 N NA
 4587892 4587893 YPE_1548 YPE_1549 kdgR ogl FALSE 0.135 187.000 0.059 1.000 N NA
 4587895 4587896 YPE_1551 YPE_1552     TRUE 0.996 -3.000 0.167 1.000 Y NA
 4587896 4587897 YPE_1552 YPE_1553     TRUE 0.996 -3.000 0.167 1.000 Y NA
 4587897 4587898 YPE_1553 YPE_1554     TRUE 0.981 82.000 0.750 1.000 Y NA
 4587898 4587899 YPE_1554 YPE_1555     TRUE 0.969 153.000 0.750 1.000 Y NA
 4587899 4587900 YPE_1555 YPE_1556     FALSE 0.007 658.000 0.000 1.000 N NA
 4587900 4587901 YPE_1556 YPE_1557   prc FALSE 0.037 474.000 0.042 0.023 N NA
 4587901 4587902 YPE_1557 YPE_1558 prc proQ TRUE 0.939 20.000 0.304 NA N NA
 4587902 4587903 YPE_1558 YPE_1559 proQ   TRUE 0.798 96.000 0.081 NA Y NA
 4587904 4587905 YPE_1560 YPE_1561     TRUE 0.997 -31.000 0.840 NA   NA
 4587905 4587906 YPE_1561 YPE_1562     FALSE 0.023 479.000 0.000 NA   NA
 4587906 4587907 YPE_1562 YPE_1563     TRUE 0.966 6.000 0.192 NA   NA
 4587907 4587908 YPE_1563 YPE_1564     TRUE 0.987 21.000 0.714 NA   NA
 4587908 4587909 YPE_1564 YPE_1565     TRUE 0.904 31.000 0.219 NA   NA
 4587909 4587910 YPE_1565 YPE_1566     TRUE 0.973 171.000 0.879 NA Y NA
 4587910 4587911 YPE_1566 YPE_1567     TRUE 0.865 206.000 0.848 NA   NA
 4587911 4587912 YPE_1567 YPE_1568     FALSE 0.133 208.000 0.000 NA   NA
 4587915 4587916 YPE_1571 YPE_1572     FALSE 0.219 155.000 0.000 NA   NA
 4587916 4587917 YPE_1572 YPE_1573     FALSE 0.031 393.000 0.000 NA   NA
 4587919 4587920 YPE_1575 YPE_1576     FALSE 0.277 100.000 0.000 NA   NA
 4587920 4587922 YPE_1576 YPE_1578     FALSE 0.037 357.000 0.000 NA   NA
 4587924 4587925 YPE_1580 YPE_1581 cheZ cheY TRUE 0.994 10.000 0.333 1.000 Y NA
 4587925 4587926 YPE_1581 YPE_1582 cheY cheB TRUE 0.951 101.000 0.286 0.010 Y NA
 4587926 4587927 YPE_1582 YPE_1583 cheB cheR TRUE 0.992 0.000 0.087 1.000 Y NA
 4587927 4587928 YPE_1583 YPE_1585 cheR tar FALSE 0.084 1967.000 0.000 1.000 Y NA
 4587928 4587929 YPE_1585 YPE_1586 tar   FALSE 0.094 241.000 0.000 NA   NA
 4587929 4587930 YPE_1586 YPE_1587     FALSE 0.361 69.000 0.000 NA   NA
 4587930 4587931 YPE_1587 YPE_1588     FALSE 0.020 528.000 0.000 NA   NA
 4587931 4587932 YPE_1588 YPE_1589     FALSE 0.023 475.000 0.000 NA   NA
 4587933 4587934 YPE_1590 YPE_1591 sgaU   TRUE 0.992 -3.000 0.400 NA N NA
 4587934 4587935 YPE_1591 YPE_1592     TRUE 0.970 13.000 0.400 NA N NA
 4587936 4587937 YPE_1593 YPE_1594 cheW cheA TRUE 0.960 163.000 0.447 0.003 Y NA
 4587937 4587938 YPE_1594 YPE_1595 cheA motB TRUE 0.998 11.000 0.913 1.000 Y NA
 4587938 4587939 YPE_1595 YPE_1596 motB motA TRUE 0.999 -3.000 0.429 1.000 Y NA
 4587939 4587940 YPE_1596 YPE_1597 motA flhC TRUE 0.679 205.000 0.408 1.000   NA
 4587940 4587941 YPE_1597 YPE_1599 flhC mgtB FALSE 0.014 1543.000 0.000 1.000   NA
 4587941 4587942 YPE_1599 YPE_1600 mgtB mgtC FALSE 0.049 401.000 0.065 1.000   NA
 4587942 4587943 YPE_1600 YPE_1601 mgtC   FALSE 0.042 340.000 0.000 NA   NA
 4587946 4587947 YPE_1604 YPE_1605     FALSE 0.256 215.000 0.105 NA   NA
 4587948 4587949 YPE_1606 YPE_1607 lacZ   FALSE 0.012 407.000 0.000 1.000 N NA
 4587949 4587950 YPE_1607 YPE_1608     FALSE 0.062 283.000 0.000 NA   NA
 4587950 4587951 YPE_1608 YPE_1609     FALSE 0.022 491.000 0.000 NA   NA
 4587951 4587952 YPE_1609 YPE_1610     FALSE 0.336 89.000 0.045 NA   NA
 4587952 4587953 YPE_1610 YPE_1611     FALSE 0.058 291.000 0.000 NA   NA
 4587954 4587955 YPE_1612 YPE_1614     FALSE 0.053 301.000 0.000 NA   NA
 4587955 4587957 YPE_1614 YPE_1615     TRUE 0.601 34.000 0.000 NA   NA
 4587958 4587959 YPE_1616 YPE_1617     FALSE 0.006 920.000 0.000 1.000 N NA
 4587959 4587960 YPE_1617 YPE_1618     TRUE 0.501 120.000 0.125 NA   NA
 4587960 4587961 YPE_1618 YPE_1619     FALSE 0.064 276.000 0.000 NA   NA
 4587963 4587964 YPE_1621 YPE_1622     TRUE 0.973 -7.000 0.182 1.000 N NA
 4587964 4587965 YPE_1622 YPE_1623     FALSE 0.354 187.000 0.158 1.000 N NA
 4587965 4587966 YPE_1623 YPE_1624     TRUE 0.783 58.000 0.180 NA   NA
 4587966 4587967 YPE_1624 YPE_1625   purB TRUE 0.613 61.000 0.093 NA   NA
 4587967 4587968 YPE_1625 YPE_1626 purB   FALSE 0.129 188.000 0.002 1.000   NA
 4587968 4587969 YPE_1626 YPE_1627   phoP FALSE 0.139 211.000 0.000 1.000   NA
 4587969 4587970 YPE_1627 YPE_1628 phoP phoQ TRUE 0.999 6.000 0.940 1.000 Y NA
 4587970 4587971 YPE_1628 YPE_1629 phoQ   TRUE 0.851 84.000 0.408 NA   NA
 4587972 4587973 YPE_1630 YPE_1631 pepT   FALSE 0.011 330.000 0.019 1.000 N NA
 4587973 4587974 YPE_1631 YPE_4354   nagK TRUE 0.498 49.000 0.000 NA   NA
 4587974 4587976 YPE_4354 YPE_1633 nagK lolE TRUE 0.727 19.000 0.000 NA   NA
 4587976 4587977 YPE_1633 YPE_1634 lolE lolD TRUE 0.979 -3.000 0.125 0.077 N NA
 4587977 4587978 YPE_1634 YPE_1635 lolD lolC TRUE 0.982 -7.000 0.175 0.077 N NA
 4587981 4587982 YPE_1638 YPE_1639     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4587983 4587984 YPE_1640 YPE_1641   moeB FALSE 0.108 136.000 0.000 1.000 N NA
 4587984 4587985 YPE_1641 YPE_1642 moeB moeA TRUE 0.998 5.000 0.323 0.003 Y NA
 4587985 4587986 YPE_1642 YPE_1643 moeA   FALSE 0.021 535.000 0.000 1.000   NA
 4587986 4587987 YPE_1643 YPE_1644     TRUE 0.914 10.000 0.094 1.000   NA
 4587987 4587988 YPE_1644 YPE_1645     TRUE 0.930 2.000 0.094 1.000 N NA
 4587988 4587989 YPE_1645 YPE_1646     TRUE 0.994 2.000 0.500 NA   NA
 4587989 4587990 YPE_1646 YPE_1647     FALSE 0.309 84.000 0.000 NA   NA
 4587990 4587991 YPE_1647 YPE_1648     FALSE 0.075 257.000 0.000 NA   NA
 4587991 4587992 YPE_1648 YPE_1649   frmA TRUE 0.950 21.000 0.273 1.000   NA
 4587992 4587993 YPE_1649 YPE_1650 frmA   TRUE 0.553 280.000 0.636 1.000 N NA
 4587994 4587995 YPE_1651 YPE_1652   folE TRUE 0.598 184.000 0.250 NA   NA
 4587995 4587996 YPE_1652 YPE_1653 folE   TRUE 0.963 55.000 0.719 NA   NA
 4587996 4587997 YPE_1653 YPE_1654   mglB FALSE 0.015 748.000 0.000 NA   NA
 4587997 4587998 YPE_1654 YPE_1655 mglB mglA TRUE 0.748 230.000 0.250 NA Y NA
 4587998 4587999 YPE_1655 YPE_1656 mglA mglC TRUE 0.998 21.000 0.905 0.013 Y NA
 4588000 4588001 YPE_1657 YPE_1658   sfcA FALSE 0.072 281.000 0.045 NA   NA
 4588001 4588002 YPE_1658 YPE_1659 sfcA cdd FALSE 0.010 356.000 0.022 1.000 N NA
 4588002 4588003 YPE_1659 YPE_1660 cdd   FALSE 0.142 326.000 0.198 1.000 N NA
 4588003 4588004 YPE_1660 YPE_1661     TRUE 0.993 -3.000 0.340 1.000   NA
 4588004 4588005 YPE_1661 YPE_1662   ydeF FALSE 0.167 242.000 0.021 0.074   NA
 4588005 4588006 YPE_1662 YPE_1663 ydeF   FALSE 0.043 333.000 0.000 NA   NA
 4588006 4588007 YPE_1663 YPE_1664     TRUE 0.935 15.000 0.177 NA   NA
 4588009 4588010 YPE_1666 YPE_1667     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4588013 4588014 YPE_1670 YPE_1671   udk FALSE 0.087 245.000 0.073 1.000 N NA
 4588014 4588015 YPE_1671 YPE_1672 udk dcd TRUE 0.807 105.000 0.098 1.000 Y NA
 4588015 4588016 YPE_1672 YPE_1673 dcd   FALSE 0.121 187.000 0.057 NA N NA
 4588018 4588019 YPE_1675 YPE_1676     FALSE 0.223 152.000 0.000 NA   NA
 4588019 4588020 YPE_1676 YPE_1677   alcA TRUE 0.966 35.000 0.667 1.000 N NA
 4588020 4588021 YPE_1677 YPE_1678 alcA alcB TRUE 0.801 0.000 0.000 NA N NA
 4588021 4588022 YPE_1678 YPE_1679 alcB   TRUE 0.823 -3.000 0.000 NA N NA
 4588023 4588024 YPE_1680 YPE_1681 ysuD   TRUE 0.999 -3.000 0.583 1.000 Y NA
 4588024 4588025 YPE_1681 YPE_1682   ysuB TRUE 0.999 -13.000 0.818 0.061 Y NA
 4588025 4588026 YPE_1682 YPE_1683 ysuB   TRUE 0.999 -3.000 0.455 1.000 Y NA
 4588026 4588027 YPE_1683 YPE_1684     TRUE 0.945 90.000 0.364 1.000 Y NA
 4588027 4588028 YPE_1684 YPE_1685     TRUE 0.755 213.000 0.455 0.002 N NA
 4588029 4588030 YPE_1686 YPE_1687 galU galF TRUE 0.918 84.000 0.111 0.001 Y NA
 4588030 4588031 YPE_1687 YPE_1688 galF gnd FALSE 0.013 386.000 0.000 1.000 N NA
 4588032 4588033 YPE_1689 YPE_1690 hisI hisF TRUE 0.999 -6.000 0.430 0.003 Y NA
 4588033 4588034 YPE_1690 YPE_1691 hisF hisA TRUE 0.999 -18.000 0.433 0.003 Y NA
 4588034 4588035 YPE_1691 YPE_1692 hisA hisH TRUE 0.996 6.000 0.210 0.003 Y NA
 4588035 4588036 YPE_1692 YPE_1693 hisH hisB TRUE 0.997 0.000 0.128 0.003 Y NA
 4588036 4588037 YPE_1693 YPE_1694 hisB hisC TRUE 0.999 -3.000 0.341 0.003 Y NA
 4588037 4588038 YPE_1694 YPE_1695 hisC hisD TRUE 0.998 3.000 0.294 0.003 Y NA
 4588038 4588039 YPE_1695 YPE_1696 hisD hisG TRUE 0.996 4.000 0.171 0.003 Y NA
 4588040 4588041 YPE_1697 YPE_1698     FALSE 0.031 392.000 0.000 NA   NA
 4588042 4588043 YPE_1699 YPE_1700     FALSE 0.088 245.000 0.000 NA   NA
 4588043 4588044 YPE_1700 YPE_1701     TRUE 0.934 -3.000 0.000 NA   NA
 4588046 4588047 YPE_1703 YPE_1704   yeeF FALSE 0.010 460.000 0.000 1.000 N NA
 11431540 4588040   YPE_1697     FALSE NA 8308.000 0.000 NA   NA
 11573903 4588040   YPE_1697     FALSE NA 8308.000 0.000 NA   NA
 11716295 4588040   YPE_1697     FALSE NA 8308.000 0.000 NA   NA
 11431541 4588040   YPE_1697     FALSE NA 8336.000 0.000 NA   NA
 11573904 4588040   YPE_1697     FALSE NA 8336.000 0.000 NA   NA
 11716296 4588040   YPE_1697     FALSE NA 8336.000 0.000 NA   NA
 11431542 4588040   YPE_1697     FALSE NA 8368.000 0.000 NA   NA
 11573905 4588040   YPE_1697     FALSE NA 8368.000 0.000 NA   NA
 11716297 4588040   YPE_1697     FALSE NA 8368.000 0.000 NA   NA
 11431543 4588040   YPE_1697     FALSE NA 8396.000 0.000 NA   NA
 11573906 4588040   YPE_1697     FALSE NA 8396.000 0.000 NA   NA
 11716298 4588040   YPE_1697     FALSE NA 8396.000 0.000 NA   NA
 11431544 4588040   YPE_1697     FALSE NA 8428.000 0.000 NA   NA
 11573907 4588040   YPE_1697     FALSE NA 8428.000 0.000 NA   NA
 11716299 4588040   YPE_1697     FALSE NA 8428.000 0.000 NA   NA
 11431545 4588040   YPE_1697     FALSE NA 8456.000 0.000 NA   NA
 11573908 4588040   YPE_1697     FALSE NA 8456.000 0.000 NA   NA
 11716300 4588040   YPE_1697     FALSE NA 8456.000 0.000 NA   NA
 11431546 4588040   YPE_1697     FALSE NA 8488.000 0.000 NA   NA
 11573909 4588040   YPE_1697     FALSE NA 8488.000 0.000 NA   NA
 11716301 4588040   YPE_1697     FALSE NA 8488.000 0.000 NA   NA
 4588049 4588050 YPE_1706 YPE_1707     FALSE 0.026 434.000 0.000 NA   NA
 4588053 4588054 YPE_1709 YPE_1711     FALSE 0.005 4044.000 0.000 1.000 N NA
 4588056 4588057 YPE_1713 YPE_1714     TRUE 0.983 48.000 0.333 0.044 Y NA
 4588057 4588058 YPE_1714 YPE_1715     TRUE 0.780 107.000 0.290 0.044 N NA
 4588058 4588059 YPE_1715 YPE_1716     FALSE 0.321 79.000 0.000 NA   NA
 4588059 4588060 YPE_1716 YPE_1717   lldD TRUE 0.520 45.000 0.000 NA   NA
 4588063 4588064 YPE_1720 YPE_1721     TRUE 0.753 36.000 0.136 1.000 N NA
 4588065 4588066 YPE_1722 YPE_1723     FALSE 0.257 117.000 0.000 NA   NA
 4588067 4588068 YPE_1724 YPE_1725     FALSE 0.025 446.000 0.000 NA   NA
 4588068 4588069 YPE_1725 YPE_1726     FALSE 0.031 258.000 0.000 1.000 N NA
 4588069 4588070 YPE_1726 YPE_1727     TRUE 0.997 20.000 0.905 NA Y NA
 4588070 4588071 YPE_1727 YPE_1728     TRUE 0.981 124.000 0.947 NA Y NA
 4588078 4588079 YPE_1735 YPE_1736 dinI pyrC FALSE 0.046 313.000 0.031 NA   NA
 4588081 4588082 YPE_1738 YPE_1739   rne FALSE 0.136 96.000 0.000 1.000 N NA
 4588083 4588084 YPE_1740 YPE_1741 rluC tnp FALSE 0.050 220.000 0.000 1.000 N NA
 4588086 4588087 YPE_1743 YPE_1744 yceD rpmF TRUE 0.988 13.000 0.599 NA   NA
 4588087 4588088 YPE_1744 YPE_1745 rpmF   TRUE 0.937 34.000 0.418 1.000 N NA
 4588088 4588089 YPE_1745 YPE_1746   fabH TRUE 0.998 7.000 0.380 0.003 Y NA
 4588089 4588090 YPE_1746 YPE_1747 fabH fabD TRUE 0.978 38.000 0.182 0.003 Y NA
 4588090 4588091 YPE_1747 YPE_1748 fabD fabG TRUE 0.997 14.000 0.432 0.003 Y NA
 4588091 4588092 YPE_1748 YPE_1749 fabG acpP TRUE 0.946 154.000 0.321 0.003 Y NA
 4588092 4588093 YPE_1749 YPE_1750 acpP fabF TRUE 0.940 95.000 0.346 1.000 Y NA
 4588093 4588094 YPE_1750 YPE_1751 fabF tnp FALSE 0.065 200.000 0.000 1.000 N NA
 4588094 4588095 YPE_1751 YPE_1752 tnp pabC FALSE 0.011 416.000 0.000 1.000 N NA
 4588095 4588096 YPE_1752 YPE_1753 pabC yceG FALSE 0.252 289.000 0.204 1.000   NA
 4588096 4588097 YPE_1753 YPE_1754 yceG tmk TRUE 0.992 -10.000 0.209 0.001   NA
 4588097 4588098 YPE_1754 YPE_1755 tmk holB TRUE 0.979 0.000 0.211 1.000 N NA
 4588098 4588099 YPE_1755 YPE_1756 holB   TRUE 0.975 15.000 0.110 NA Y NA
 4588099 4588100 YPE_1756 YPE_1757   ptsG FALSE 0.005 306.000 0.004 NA N NA
 4588100 4588101 YPE_1757 YPE_1758 ptsG tnp FALSE 0.073 190.000 0.000 1.000 N NA
 4588101 4588102 YPE_1758 YPE_1759 tnp   FALSE 0.013 383.000 0.000 1.000 N NA
 4588102 4588103 YPE_1759 YPE_1760     FALSE 0.031 174.000 0.003 1.000 N NA
 4588103 4588104 YPE_1760 YPE_1761     TRUE 0.654 35.000 0.051 NA   NA
 4588104 4588105 YPE_1761 YPE_1762     TRUE 0.955 41.000 0.516 NA   NA
 4588105 4588106 YPE_1762 YPE_1763   thiK TRUE 0.913 41.000 0.310 NA   NA
 4588106 4588107 YPE_1763 YPE_1764 thiK   FALSE 0.331 71.000 0.069 1.000 N NA
 4588107 4588108 YPE_1764 YPE_1765     TRUE 0.409 128.000 0.091 NA   NA
 4588108 4588109 YPE_1765 YPE_1766   ndh FALSE 0.048 375.000 0.057 NA   NA
 4588109 4588110 YPE_1766 YPE_1767 ndh   FALSE 0.201 171.000 0.000 NA   NA
 4588110 4588111 YPE_1767 YPE_1768     FALSE 0.197 173.000 0.000 NA   NA
 4588111 4588112 YPE_1768 YPE_1769     TRUE 0.837 8.000 0.000 NA   NA
 4588112 4588113 YPE_1769 YPE_1770     FALSE 0.287 96.000 0.000 NA   NA
 4588114 4588115 YPE_1771 YPE_1772     FALSE 0.107 228.000 0.000 NA   NA
 4588117 4588118 YPE_1774 YPE_1775     TRUE 0.676 25.000 0.000 NA   NA
 4588118 4588119 YPE_1775 YPE_1776     TRUE 0.924 0.000 0.000 NA   NA
 4588119 4588120 YPE_1776 YPE_1777     TRUE 0.950 68.000 0.750 NA   NA
 4588120 4588121 YPE_1777 YPE_1778     TRUE 0.996 -36.000 0.750 NA   NA
 4588121 4588122 YPE_1778 YPE_1779     FALSE 0.117 221.000 0.000 NA   NA
 4588122 4588123 YPE_1779 YPE_1780     TRUE 0.990 0.000 0.286 NA   NA
 4588123 4588124 YPE_1780 YPE_1781     TRUE 0.918 -9.000 0.040 NA   NA
 4588124 4588125 YPE_1781 YPE_1782     TRUE 0.754 44.000 0.120 NA   NA
 4588125 4588126 YPE_1782 YPE_1783     TRUE 0.997 -3.000 0.625 NA   NA
 4588126 4588127 YPE_1783 YPE_1784     FALSE 0.013 2276.000 0.000 NA   NA
 4588127 4588128 YPE_1784 YPE_1785     TRUE 0.806 173.000 0.500 NA   NA
 4588128 4588129 YPE_1785 YPE_1786     TRUE 0.752 16.000 0.000 NA   NA
 4588129 4588130 YPE_1786 YPE_1787     FALSE 0.221 154.000 0.000 NA   NA
 4588130 4588131 YPE_1787 YPE_1788     TRUE 0.934 -3.000 0.000 NA   NA
 4588131 4588132 YPE_1788 YPE_1789     TRUE 0.974 16.000 0.400 NA   NA
 4588132 4588133 YPE_1789 YPE_1790     TRUE 0.964 3.000 0.125 NA   NA
 4588133 4588134 YPE_1790 YPE_1791     FALSE 0.059 388.000 0.083 NA   NA
 4588134 4588135 YPE_1791 YPE_1792     TRUE 0.882 4.000 0.000 NA   NA
 4588135 4588136 YPE_1792 YPE_1793     TRUE 0.924 0.000 0.000 NA   NA
 4588136 4588137 YPE_1793 YPE_1794     TRUE 0.998 -3.000 0.750 NA   NA
 4588137 4588138 YPE_1794 YPE_1795     TRUE 0.800 12.000 0.000 NA   NA
 4588138 4588139 YPE_1795 YPE_1796     TRUE 0.533 43.000 0.000 NA   NA
 4588139 4588140 YPE_1796 YPE_1797     FALSE 0.016 665.000 0.000 NA   NA
 4588140 4588141 YPE_1797 YPE_1798     FALSE 0.218 157.000 0.000 NA   NA
 4588141 4588142 YPE_1798 YPE_1799     FALSE 0.297 99.000 0.000 1.000   NA
 4588142 4588143 YPE_1799 YPE_1800     TRUE 0.568 38.000 0.000 NA   NA
 4588143 4588144 YPE_1800 YPE_1801     TRUE 0.560 39.000 0.000 NA   NA
 4588144 4588145 YPE_1801 YPE_1802     TRUE 0.992 3.000 0.051 0.043 Y NA
 4588145 4588146 YPE_1802 YPE_1803     TRUE 0.996 -7.000 0.120 0.016 Y NA
 4588146 4588147 YPE_1803 YPE_1804     TRUE 0.993 -7.000 0.120 1.000 Y NA
 4588147 4588148 YPE_1804 YPE_1805     TRUE 0.991 16.000 0.333 1.000 Y NA
 4588148 4588149 YPE_1805 YPE_1806     TRUE 0.990 -7.000 0.056 1.000 Y NA
 4588149 4588150 YPE_1806 YPE_1807     TRUE 0.990 -10.000 0.083 NA Y NA
 4588150 4588151 YPE_1807 YPE_1808     FALSE 0.044 330.000 0.000 NA   NA
 4588152 4588153 YPE_1809 YPE_1810     FALSE 0.299 154.000 0.000 0.019 N NA
 4588157 4588158 YPE_1814 YPE_1815     TRUE 0.616 61.000 0.094 NA   NA
 4588160 4588161 YPE_1817 YPE_1818   mgsA FALSE 0.240 179.000 0.055 NA   NA
 4588163 4588164 YPE_1820 YPE_1821     TRUE 0.784 30.000 0.090 NA   NA
 4588166 4588167 YPE_1823 YPE_1824 sulA ompA FALSE 0.015 358.000 0.000 1.000 N NA
 4588167 4588168 YPE_1824 YPE_1825 ompA tnp FALSE 0.073 190.000 0.000 1.000 N NA
 4588170 4588171 YPE_1827 YPE_1828   fabA TRUE 0.770 69.000 0.290 1.000 N NA
 4588173 4588175 YPE_1830N YPE_1831     FALSE 0.304 87.000 0.000 NA   NA
 4588175 4588176 YPE_1831 YPE_1832     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4588179 4588180 YPE_1833 YPE_1834     FALSE 0.041 341.000 0.000 NA   NA
 4588180 4588181 YPE_1834 YPE_1835     FALSE 0.014 367.000 0.000 1.000 N NA
 4588181 4588182 YPE_1835 YPE_1836     TRUE 0.674 151.000 0.000 1.000 Y NA
 4588182 4588183 YPE_1836 YPE_1837     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4588183 4588184 YPE_1837 YPE_1838     TRUE 0.939 -3.000 0.000 1.000   NA
 4588184 4588185 YPE_1838 YPE_1839     TRUE 0.990 -7.000 0.312 NA   NA
 4588185 4588186 YPE_1839 YPE_1840     TRUE 0.976 -3.000 0.125 NA   NA
 4588187 4588188 YPE_1841 YPE_1842 artM artQ TRUE 0.999 0.000 0.714 0.017 Y NA
 4588188 4588189 YPE_1842 YPE_1843 artQ artI TRUE 0.994 12.000 0.260 0.075 Y NA
 4588189 4588190 YPE_1843 YPE_1844 artI artP TRUE 0.988 21.000 0.323 1.000 Y NA
 4588190 4588191 YPE_1844 YPE_1845 artP   FALSE 0.298 295.000 0.000 1.000 Y NA
 4588191 4588192 YPE_1845 YPE_1846     FALSE 0.166 170.000 0.018 NA   NA
 4588192 4588193 YPE_1846 YPE_1847     TRUE 0.660 78.000 0.167 NA   NA
 4588193 4588194 YPE_1847 YPE_1848     TRUE 0.831 100.000 0.022 0.003 Y NA
 4588194 4588195 YPE_1848 YPE_1849   ltaA TRUE 0.933 -3.000 0.074 1.000 N NA
 4588195 4588196 YPE_1849 YPE_1850 ltaA poxB FALSE 0.225 349.000 0.031 1.000 Y NA
 4588196 4588197 YPE_1850 YPE_1851 poxB hcr FALSE 0.059 144.000 0.017 1.000 N NA
 4588197 4588198 YPE_1851 YPE_1852 hcr hcp TRUE 0.862 114.000 0.085 0.011 Y NA
 4588198 4588199 YPE_1852 YPE_1853 hcp   FALSE 0.135 202.000 0.028 NA   NA
 4588202 4588203 YPE_1856 YPE_1857   macB TRUE 0.998 0.000 0.789 0.095 N NA
 4588205 4588206 YPE_1859 YPE_1860   clpA TRUE 0.977 26.000 0.596 NA   NA
 4588206 4588207 YPE_1860 YPE_1861 clpA tnp FALSE 0.023 293.000 0.000 1.000 N NA
 4588208 4588209 YPE_1862 YPE_1863 infA aat FALSE 0.060 166.000 0.020 1.000 N NA
 4588209 4588210 YPE_1863 YPE_1864 aat cydC TRUE 0.524 219.000 0.049 1.000 Y NA
 4588210 4588211 YPE_1864 YPE_1865 cydC cydD TRUE 0.999 3.000 0.631 0.005 Y NA
 4588211 4588212 YPE_1865 YPE_1866 cydD trxB FALSE 0.167 459.000 0.049 1.000 Y NA
 4588213 4588214 YPE_1867 YPE_1868 lrp ftsK TRUE 0.721 123.000 0.345 1.000 N NA
 4588214 4588215 YPE_1868 YPE_1869 ftsK lolA TRUE 0.552 193.000 0.305 1.000 N NA
 4588215 4588216 YPE_1869 YPE_1870 lolA   TRUE 0.924 11.000 0.167 1.000 N NA
 4588216 4588217 YPE_1870 YPE_1871   serS FALSE 0.097 242.000 0.078 1.000 N NA
 4588217 4588218 YPE_1871 YPE_1872 serS   FALSE 0.027 271.000 0.000 1.000 N NA
 4588221 4588222 YPE_1875 YPE_1876 pflB focA TRUE 0.712 56.000 0.172 1.000 N NA
 4588222 4588223 YPE_1876 YPE_1877 focA   FALSE 0.016 697.000 0.000 NA   NA
 4588224 4588225 YPE_1878 YPE_1879 ansB   FALSE 0.073 269.000 0.000 1.000   NA
 4588225 4588226 YPE_1879 YPE_1880     TRUE 0.924 0.000 0.000 NA   NA
 4588226 4588227 YPE_1880 YPE_1881   serC FALSE 0.036 367.000 0.000 NA   NA
 4588227 4588228 YPE_1881 YPE_1882 serC aroA TRUE 0.655 163.000 0.033 1.000 Y NA
 4588228 4588229 YPE_1882 YPE_1883 aroA cmk FALSE 0.160 313.000 0.209 1.000 N NA
 4588229 4588230 YPE_1883 YPE_1884 cmk rpsA TRUE 0.576 174.000 0.281 1.000 N NA
 4588230 4588231 YPE_1884 YPE_1885 rpsA ihfB TRUE 0.815 61.000 0.292 1.000 N NA
 4588231 4588232 YPE_1885 YPE_1886 ihfB   FALSE 0.014 547.000 0.003 1.000   NA
 4588232 4588233 YPE_1886 YPE_1887   msbA TRUE 0.829 36.000 0.075 0.072   NA
 4588233 4588234 YPE_1887 YPE_1888 msbA lpxK TRUE 0.981 -3.000 0.205 1.000 N NA
 4588236 4588237 YPE_1890 YPE_1891 cspB   FALSE 0.013 548.000 0.004 NA   NA
 4588237 4588238 YPE_1891 YPE_1892   kdsB TRUE 0.990 -3.000 0.265 NA   NA
 4588238 4588239 YPE_1892 YPE_1893 kdsB   FALSE 0.031 363.000 0.023 NA   NA
 4588239 4588240 YPE_1893 YPE_1894   smtA FALSE 0.015 773.000 0.000 NA   NA
 4588240 4588241 YPE_1894 YPE_1895 smtA mukF TRUE 0.990 -3.000 0.325 NA N NA
 4588241 4588242 YPE_1895 YPE_1896 mukF mukE TRUE 0.990 8.000 0.196 NA Y NA
 4588242 4588243 YPE_1896 YPE_1897 mukE mukB TRUE 1.000 -3.000 0.786 0.001 Y NA
 4588243 4588244 YPE_1897 YPE_1898 mukB tnp FALSE 0.148 216.000 0.000 0.082 N NA
 4588244 4588245 YPE_1898 YPE_1899 tnp   FALSE 0.066 284.000 0.000 1.000   NA
 4588245 4588246 YPE_1899 YPE_1900     TRUE 0.584 224.000 0.372 NA   NA
 4588246 4588247 YPE_1900 YPE_1901     TRUE 0.607 61.000 0.089 NA   NA
 4588248 4588249 YPE_1902 YPE_1903 aspC ompF FALSE 0.031 257.000 0.000 1.000 N NA
 4588249 4588250 YPE_1903 YPE_1904 ompF asnS FALSE 0.022 298.000 0.000 1.000 N NA
 4588250 4588251 YPE_1904 YPE_1905 asnS pncB FALSE 0.008 499.000 0.034 1.000 N NA
 4588252 4588253 YPE_1906 YPE_1907 pepN pyrD FALSE 0.003 618.000 0.014 1.000 N NA
 4588253 4588254 YPE_1907 YPE_1908 pyrD   FALSE 0.297 183.000 0.081 NA   NA
 4588256 4588257 YPE_1910 YPE_1911   uup TRUE 0.903 6.000 0.061 1.000   NA
 4588257 4588258 YPE_1911 YPE_1912 uup pqiA FALSE 0.308 129.000 0.054 NA   NA
 4588258 4588259 YPE_1912 YPE_1913 pqiA pqiB TRUE 0.992 14.000 0.819 NA   NA
 4588259 4588260 YPE_1913 YPE_1914 pqiB   TRUE 0.996 -3.000 0.531 NA   NA
 4588260 4588261 YPE_1914 YPE_1915     TRUE 0.498 49.000 0.000 NA   NA
 4588261 4588262 YPE_1915 YPE_1916   rmf FALSE 0.317 81.000 0.000 NA   NA
 4588262 4588263 YPE_1916 YPE_1917 rmf tnp FALSE 0.057 198.000 0.000 NA N NA
 4588264 4588266 YPE_1830C YPE_1918     FALSE 0.346 72.000 0.000 NA   NA
 4588266 4588267 YPE_1918 YPE_1919     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4588270 4588271 YPE_1921 YPE_1922     TRUE 0.550 84.000 0.119 NA   NA
 4588271 4588272 YPE_1922 YPE_1923   potI TRUE 0.708 125.000 0.264 NA   NA
 4588272 4588273 YPE_1923 YPE_1924 potI potH TRUE 0.999 -3.000 0.528 0.059 Y NA
 4588273 4588274 YPE_1924 YPE_1925 potH potG TRUE 0.997 25.000 0.857 1.000 Y NA
 4588274 4588275 YPE_1925 YPE_1926 potG potF TRUE 0.960 171.000 0.679 1.000 Y NA
 4588275 4588276 YPE_1926 YPE_1927 potF   FALSE 0.021 518.000 0.000 NA   NA
 4588276 4588277 YPE_1927 YPE_1928     TRUE 0.844 7.000 0.000 NA   NA
 4588277 4588278 YPE_1928 YPE_1929     TRUE 0.752 16.000 0.000 NA   NA
 4588279 4588280 YPE_1930 YPE_1931 grxA   FALSE 0.031 410.000 0.000 1.000   NA
 4588280 4588281 YPE_1931 YPE_1932   rybB FALSE 0.294 93.000 0.000 NA   NA
 4588281 4588282 YPE_1932 YPE_1933 rybB   FALSE 0.215 160.000 0.000 NA   NA
 4588282 4588283 YPE_1933 YPE_1934   ybjG TRUE 0.954 9.000 0.106 0.094   NA
 4588283 4588284 YPE_1934 YPE_1935 ybjG   FALSE 0.080 258.000 0.000 1.000   NA
 4588284 4588285 YPE_1935 YPE_1936   deoR FALSE 0.038 230.000 0.030 1.000 N NA
 4588285 4588286 YPE_1936 YPE_1937 deoR sdaC FALSE 0.005 1100.000 0.000 1.000 N NA
 4588287 4588288 YPE_1938 YPE_1939 dacC   FALSE 0.038 242.000 0.000 1.000 N NA
 4588288 4588289 YPE_1939 YPE_1940     TRUE 0.994 -3.000 0.096 1.000 Y NA
 4588289 4588290 YPE_1940 YPE_1941     TRUE 0.998 -3.000 0.323 NA Y NA
 4588290 4588291 YPE_1941 YPE_1942     FALSE 0.340 228.000 0.174 NA   NA
 4588292 4588293 YPE_1943 YPE_1944     FALSE 0.165 154.000 0.056 1.000 N NA
 4588294 4588295 YPE_1945 YPE_1946   yiuC FALSE 0.362 260.000 0.000 1.000 Y NA
 4588295 4588296 YPE_1946 YPE_1947 yiuC yiuB TRUE 0.999 -3.000 0.833 1.000 Y NA
 4588296 4588297 YPE_1947 YPE_1948 yiuB yiuA TRUE 0.777 195.000 0.175 1.000 Y NA
 4588297 4588298 YPE_1948 YPE_1949 yiuA lysP FALSE 0.025 286.000 0.000 1.000 N NA
 4588298 4588299 YPE_1949 YPE_1950 lysP   FALSE 0.252 258.000 0.222 1.000 N NA
 4588300 4588301 YPE_1951 YPE_1952   nfo FALSE 0.240 164.000 0.040 1.000   NA
 4588302 4588303 YPE_1953 YPE_1954 psaC psaB TRUE 0.893 42.000 0.000 1.000 Y NA
 4588303 4588304 YPE_1954 YPE_1955 psaB psaA TRUE 0.801 127.000 0.400 NA   NA
 4588304 4588305 YPE_1955 YPE_1956 psaA psaF FALSE 0.019 545.000 0.000 NA   NA
 4588305 4588306 YPE_1956 YPE_1957 psaF psaE TRUE 0.999 -3.000 1.000 NA   NA
 4588306 4588307 YPE_1957 YPE_1958 psaE fruA FALSE 0.018 325.000 0.000 1.000 N NA
 4588307 4588308 YPE_1958 YPE_1959 fruA fruK TRUE 0.996 15.000 0.562 1.000 Y NA
 4588308 4588309 YPE_1959 YPE_1960 fruK fruB TRUE 0.994 -3.000 0.112 1.000 Y NA
 4588311 4588312 YPE_1962 YPE_1963     TRUE 0.989 36.000 0.375 0.013 Y NA
 4588312 4588313 YPE_1963 YPE_1964     TRUE 0.935 109.000 0.375 NA Y NA
 4588313 4588314 YPE_1964 YPE_1965     TRUE 0.676 140.000 0.000 NA Y NA
 4588314 4588315 YPE_1965 YPE_1966     TRUE 0.948 20.000 0.000 1.000 Y NA
 4588315 4588316 YPE_1966 YPE_1967     TRUE 0.863 4.000 0.065 1.000 N NA
 4588317 4588318 YPE_1968 YPE_1969   serA1 TRUE 0.968 -3.000 0.017 0.043   NA
 4588318 4588319 YPE_1969 YPE_1970 serA1   TRUE 0.861 11.000 0.000 0.043 N NA
 4588321 4588322 YPE_1972 YPE_1973 mtr   TRUE 0.478 104.000 0.153 1.000 N NA
 4588325 4588326 YPE_1976 YPE_1977     TRUE 0.644 109.000 0.200 NA   NA
 4588327 4588328 YPE_1978 YPE_1979     TRUE 0.855 59.000 0.275 NA   NA
 4588328 4588329 YPE_1979 YPE_1980   spr FALSE 0.026 442.000 0.000 NA   NA
 4588329 4588330 YPE_1980 YPE_1982 spr   FALSE 0.004 2250.000 0.000 NA N NA
 4588330 4588331 YPE_1982 YPE_1983     TRUE 0.997 10.000 0.848 0.059   NA
 4588331 4588332 YPE_1983 YPE_1984     TRUE 0.999 0.000 0.833 0.059   NA
 4588332 4588333 YPE_1984 YPE_1985     TRUE 0.997 2.000 0.758 1.000   NA
 4588334 4588335 YPE_1986 YPE_1987   bcr FALSE 0.014 967.000 0.000 NA   NA
 4588335 4588336 YPE_1987 YPE_1988 bcr rsuA TRUE 0.444 119.000 0.145 1.000 N NA
 4588337 4588338 YPE_1989 YPE_1990   rplY FALSE 0.282 162.000 0.024 0.012 N NA
 4588339 4588340 YPE_1991 YPE_1992 tnp   FALSE 0.149 201.000 0.000 NA   NA
 4588341 4588342 YPE_1993 YPE_1994     TRUE 0.669 28.000 0.040 NA   NA
 4588342 4588343 YPE_1994 YPE_1995     FALSE 0.268 105.000 0.000 NA   NA
 4588343 4588344 YPE_1995 YPE_1996     TRUE 0.490 50.000 0.000 NA   NA
 4588344 4588346 YPE_1996 YPE_1997     FALSE 0.037 357.000 0.000 NA   NA
 4588346 4588347 YPE_1997 YPE_1998     TRUE 0.789 13.000 0.000 NA   NA
 4588347 4588348 YPE_1998 YPE_1999     FALSE 0.016 700.000 0.000 NA   NA
 4588349 4588350 YPE_2000 YPE_2001 bglA   FALSE 0.086 291.000 0.000 0.016 N NA
 4588350 4588351 YPE_2001 YPE_2002   stf FALSE 0.054 298.000 0.000 NA   NA
 4588351 4588352 YPE_2002 YPE_2003 stf   FALSE 0.285 97.000 0.000 NA   NA
 4588352 4588353 YPE_2003 YPE_2004     TRUE 0.934 -3.000 0.000 NA   NA
 4588353 4588354 YPE_2004 YPE_2005     TRUE 0.996 -3.000 0.500 NA   NA
 4588354 4588355 YPE_2005 YPE_2006     TRUE 0.997 4.000 1.000 NA   NA
 4588355 4588356 YPE_2006 YPE_2007     TRUE 0.999 -3.000 1.000 NA   NA
 4588356 4588357 YPE_2007 YPE_2008     TRUE 0.994 16.000 1.000 NA   NA
 4588357 4588358 YPE_2008 YPE_2009     TRUE 0.962 -3.000 0.074 NA   NA
 4588358 4588359 YPE_2009 YPE_2010     FALSE 0.116 267.000 0.074 NA   NA
 4588359 4588360 YPE_2010 YPE_2011     TRUE 0.899 121.000 0.667 NA   NA
 4588360 4588361 YPE_2011 YPE_2012     TRUE 0.998 2.000 1.000 NA   NA
 4588361 4588362 YPE_2012 YPE_2013     TRUE 0.992 22.000 1.000 NA   NA
 4588362 4588363 YPE_2013 YPE_2014     TRUE 0.996 -3.000 0.500 NA   NA
 4588363 4588364 YPE_2014 YPE_2015     TRUE 0.991 5.000 0.500 NA   NA
 4588364 4588365 YPE_2015 YPE_2016     TRUE 0.515 46.000 0.000 NA   NA
 4588365 4588366 YPE_2016 YPE_2017     FALSE 0.017 614.000 0.000 NA   NA
 4588366 4588367 YPE_2017 YPE_2018     TRUE 0.992 18.000 0.400 1.000 Y NA
 4588367 4588368 YPE_2018 YPE_2019     FALSE 0.016 706.000 0.000 NA   NA
 4588368 4588369 YPE_2019 YPE_2020     FALSE 0.146 202.000 0.000 NA   NA
 4588370 4588371 YPE_2021 YPE_2022   msgA FALSE 0.146 206.000 0.000 1.000   NA
 4588371 4588372 YPE_2022 YPE_2023 msgA pla2 FALSE 0.212 172.000 0.000 1.000   NA
 4588372 4588373 YPE_2023 YPE_2024 pla2 tsr2 FALSE 0.011 422.000 0.000 1.000 N NA
 4588375 4588376 YPE_2026 YPE_2027   ampH FALSE 0.022 275.000 0.000 NA N NA
 4588377 4588378 YPE_2028 YPE_2029     TRUE 0.854 6.000 0.000 NA   NA
 4588378 4588379 YPE_2029 YPE_2030   tnp FALSE 0.014 1145.000 0.000 NA   NA
 4588379 4588380 YPE_2030 YPE_2031 tnp ompC FALSE 0.063 202.000 0.000 1.000 N NA
 4588381 4588382 YPE_2032 YPE_2033 micF   FALSE 0.016 699.000 0.000 NA   NA
 4588382 4588383 YPE_2033 YPE_2035     TRUE 0.688 24.000 0.000 NA   NA
 4588383 4588385 YPE_2035 YPE_2036   rcsB TRUE 0.900 3.000 0.000 NA   NA
 4588386 4588387 YPE_2037 YPE_2038 rcsC gyrA FALSE 0.156 188.000 0.013 0.099 N NA
 4588388 4588389 YPE_2039 YPE_2040 ubiG nrdA FALSE 0.009 494.000 0.000 1.000 N NA
 4588389 4588390 YPE_2040 YPE_2041 nrdA nrdB TRUE 0.989 163.000 1.000 0.001 Y NA
 4588390 4588391 YPE_2041 YPE_2042 nrdB yfaE TRUE 0.747 4.000 0.034 1.000 N NA
 4588391 4588392 YPE_2042 YPE_2043 yfaE eco TRUE 0.551 35.000 0.023 NA   NA
 4588398 4588399 YPE_2049 YPE_2050 ompC2   FALSE 0.060 412.000 0.000 0.093   NA
 4588400 4588401 YPE_2051 YPE_2052     TRUE 0.944 70.000 0.286 1.000 Y NA
 4588401 4588402 YPE_2052 YPE_2053     FALSE 0.193 484.000 0.000 0.093 Y NA
 4588402 4588403 YPE_2053 YPE_2054     TRUE 0.999 -3.000 0.542 1.000 Y NA
 4588403 4588404 YPE_2054 YPE_2055     TRUE 0.999 -3.000 0.489 1.000 Y NA
 4588404 4588405 YPE_2055 YPE_2056     FALSE 0.072 261.000 0.000 NA   NA
 4588408 4588409 YPE_2059 YPE_2060     TRUE 0.688 24.000 0.000 NA   NA
 4588409 4588410 YPE_2060 YPE_2061     FALSE 0.258 115.000 0.000 NA   NA
 4588410 4588411 YPE_2061 YPE_2062     TRUE 0.954 94.000 0.731 0.019   NA
 4588411 4588412 YPE_2062 YPE_2063     TRUE 0.998 -3.000 0.823 1.000   NA
 4588412 4588413 YPE_2063 YPE_2064     TRUE 1.000 0.000 0.758 0.058 Y NA
 4588413 4588414 YPE_2064 YPE_2065     TRUE 0.967 124.000 0.654 1.000 Y NA
 4588414 4588415 YPE_2065 YPE_2066     FALSE 0.026 435.000 0.000 NA   NA
 4588415 4588416 YPE_2066 YPE_2067     FALSE 0.087 246.000 0.000 NA   NA
 4588416 4588417 YPE_2067 YPE_2068     TRUE 0.999 -3.000 0.491 0.001 Y NA
 4588417 4588418 YPE_2068 YPE_2069     TRUE 0.973 163.000 0.568 0.001 Y NA
 4588418 4588419 YPE_2069 YPE_2070     TRUE 0.995 37.000 0.589 0.002 Y NA
 4588419 4588420 YPE_2070 YPE_2071     FALSE 0.137 208.000 0.032 1.000   NA
 4588420 4588421 YPE_2071 YPE_2072     TRUE 0.511 110.000 0.125 NA   NA
 4588425 4588426 YPE_2076 YPE_2077 pbpG dusC FALSE 0.007 592.000 0.000 1.000 N NA
 4588426 4588427 YPE_2077 YPE_2078 dusC   FALSE 0.056 294.000 0.000 NA   NA
 4588427 4588428 YPE_2078 YPE_2079   tnp FALSE 0.028 415.000 0.000 NA   NA
 4588428 4588429 YPE_2079 YPE_2080 tnp xapA FALSE 0.006 929.000 0.000 1.000 N NA
 4588431 4588432 YPE_2082 YPE_2083   betT FALSE 0.043 232.000 0.000 1.000 N NA
 4588433 4588434 YPE_2084 YPE_2085 betI betB TRUE 0.900 58.000 0.459 1.000 N NA
 4588434 4588435 YPE_2085 YPE_2086 betB betA TRUE 0.977 23.000 0.634 1.000 N NA
 4588436 4588437 YPE_2087 YPE_2088 tnp   FALSE 0.108 235.000 0.000 1.000   NA
 4588437 4588438 YPE_2088 YPE_2089   moaE FALSE 0.221 143.000 0.025 1.000   NA
 4588438 4588439 YPE_2089 YPE_2090 moaE moaD TRUE 0.999 0.000 0.501 0.003 Y NA
 4588439 4588440 YPE_2090 YPE_2091 moaD moaC TRUE 0.998 -3.000 0.175 0.003 Y NA
 4588440 4588441 YPE_2091 YPE_2092 moaC moaA TRUE 0.844 101.000 0.039 0.003 Y NA
 4588443 4588444 YPE_2094 YPE_2095   uvrB FALSE 0.039 292.000 0.003 NA   NA
 4588446 4588447 YPE_2097 YPE_2098 bioD bioC TRUE 0.995 -7.000 0.054 0.002 Y NA
 4588447 4588448 YPE_2098 YPE_2099 bioC bioF TRUE 0.996 -16.000 0.133 0.002 Y NA
 4588448 4588449 YPE_2099 YPE_2100 bioF bioB TRUE 0.998 0.000 0.168 0.002 Y NA
 4588453 4588454 YPE_2104 YPE_2105 modC modB TRUE 0.999 -6.000 0.537 0.001 Y NA
 4588454 4588455 YPE_2105 YPE_2106 modB modA TRUE 0.999 0.000 0.627 0.001 Y NA
 4588455 4588456 YPE_2106 YPE_2107 modA   FALSE 0.161 235.000 0.072 NA   NA
 4588457 4588458 YPE_2108 YPE_2109 modE modF TRUE 0.414 110.000 0.028 0.099   NA
 4588458 4588459 YPE_2109 YPE_2110 modF   FALSE 0.090 217.000 0.009 NA   NA
 4588459 4588460 YPE_2110 YPE_2111   galE FALSE 0.037 360.000 0.000 NA   NA
 4588460 4588461 YPE_2111 YPE_2112 galE galT TRUE 0.927 10.000 0.053 0.001 N NA
 4588461 4588462 YPE_2112 YPE_2113 galT galK TRUE 0.996 -3.000 0.370 0.001 N NA
 4588462 4588463 YPE_2113 YPE_2115 galK galM TRUE 0.924 -6.000 0.000 NA   NA
 4588463 4588465 YPE_2115 YPE_2116 galM psiF FALSE 0.057 293.000 0.000 NA   NA
 4588465 4588466 YPE_2116 YPE_2117 psiF gpmA FALSE 0.040 347.000 0.000 NA   NA
 4588469 4588470 YPE_2119 YPE_2120     TRUE 0.990 -3.000 0.000 1.000 Y NA
 4588470 4588471 YPE_2120 YPE_2122     FALSE 0.005 1475.000 0.000 1.000 N NA
 4588472 4588473 YPE_2123 YPE_2124 pnuC nadA TRUE 0.693 122.000 0.023 1.000 Y NA
 4588473 4588474 YPE_2124 YPE_2125 nadA   FALSE 0.035 369.000 0.000 NA   NA
 4588474 4588476 YPE_2125 YPE_2126     TRUE 0.641 29.000 0.000 NA   NA
 4588476 4588477 YPE_2126 YPE_2127     TRUE 0.649 28.000 0.000 NA   NA
 4588477 4588478 YPE_2127 YPE_2128     FALSE 0.166 191.000 0.000 NA   NA
 4588478 4588479 YPE_2128 YPE_2129   pal TRUE 0.910 10.000 0.088 1.000   NA
 4588479 4588480