MicrobesOnline Operon Predictions for Mycobacterium bovis BCG str. Pasteur 1173P2

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 2098268 2098269 BCG_0001 BCG_0002 dnaA_1 dnaN_1 FALSE 0.074 528.000 0.328 1.000 Y NA
 2098269 2098270 BCG_0002 BCG_0003 dnaN_1 recF_1 TRUE 0.927 20.000 0.318 1.000 Y NA
 2098270 2098271 BCG_0003 BCG_0004 recF_1   TRUE 0.952 -3.000 0.099 NA   NA
 2098271 2098272 BCG_0004 BCG_0005   gyrB_1 FALSE 0.117 126.000 0.022 NA   NA
 2098272 2098273 BCG_0005 BCG_0006 gyrB_1 gyrA_1 TRUE 0.954 35.000 0.306 0.002 Y NA
 2098273 2098274 BCG_0006 BCG_0007 gyrA_1   FALSE 0.174 96.000 0.009 NA   NA
 2098274 2098275 BCG_0007 ileT_1   tRNA-Ile FALSE 0.139 59.000 0.000 NA   NA
 2098275 2098276 ileT_1 alaT_1 tRNA-Ile tRNA-Ala FALSE 0.038 152.000 0.000 NA   NA
 2098279 2098280 BCG_0010c BCG_0011c     FALSE 0.121 156.000 0.181 NA   NA
 2098281 2098282 BCG_0012 BCG_0013   trpG_1 FALSE 0.371 37.000 0.098 NA   NA
 2098284 2098285 BCG_0015 BCG_0016   sigMa_2 FALSE 0.178 35.000 0.000 NA   NA
 2098285 2098286 BCG_0016 BCG_0017 sigMa_2 sigMb_2 FALSE 0.217 -111.000 0.000 NA   NA
 2098286 2098287 BCG_0017 BCG_0018 sigMb_2   FALSE 0.340 16.000 0.000 NA   NA
 2098287 2098288 BCG_0018 BCG_0019   trxB2_2 FALSE 0.189 94.000 0.015 NA   NA
 2098288 2098289 BCG_0019 BCG_0020 trxB2_2 trxC_2 TRUE 0.991 -3.000 0.025 1.000 Y NA
 2098289 2098290 BCG_0020 BCG_0021 trxC_2   FALSE 0.276 110.000 0.237 1.000 N NA
 2098291 2098292 BCG_0022c BCG_0023c   parB_2 FALSE 0.011 290.000 0.013 NA   NA
 2098292 2098293 BCG_0023c BCG_0024c parB_2 parA_2 TRUE 0.993 -3.000 0.827 1.000 N NA
 2098293 2098294 BCG_0024c BCG_0025c parA_2 gid_2 TRUE 0.978 -3.000 0.339 1.000 N NA
 2098294 2098295 BCG_0025c BCG_0026c gid_2   FALSE 0.180 132.000 0.070 1.000   NA
 2098295 2098296 BCG_0026c BCG_0027c     FALSE 0.290 72.000 0.024 1.000   NA
 2098296 2098297 BCG_0027c BCG_0028c     FALSE 0.468 -16.000 0.010 NA   NA
 2098297 2098298 BCG_0028c BCG_0029c   rnpA_2 TRUE 0.989 -3.000 0.540 NA   NA
 2098298 2098299 BCG_0029c BCG_0030c rnpA_2 rpmH_2 TRUE 0.994 -3.000 0.787 1.000   NA
 2098300 2098301 BCG_0031 BCG_0032 dnaA_2 dnaN_2 FALSE 0.074 528.000 0.328 1.000 Y NA
 2098301 2098302 BCG_0032 BCG_0033 dnaN_2 recF_2 TRUE 0.927 20.000 0.318 1.000 Y NA
 2098302 2098303 BCG_0033 BCG_0034 recF_2   TRUE 0.952 -3.000 0.099 NA   NA
 2098303 2098304 BCG_0034 BCG_0035   gyrB_2 FALSE 0.117 126.000 0.022 NA   NA
 2098304 2098305 BCG_0035 BCG_0036 gyrB_2 gyrA_2 TRUE 0.954 35.000 0.306 0.002 Y NA
 2098305 2098306 BCG_0036 BCG_0037 gyrA_2   FALSE 0.174 96.000 0.009 NA   NA
 2098306 2098307 BCG_0037 ileT_2   tRNA-Ile FALSE 0.139 59.000 0.000 NA   NA
 2098307 2098308 ileT_2 alaT_2 tRNA-Ile tRNA-Ala FALSE 0.038 152.000 0.000 NA   NA
 2098311 2098312 BCG_0040c BCG_0041c     FALSE 0.121 156.000 0.181 NA   NA
 2098313 2098314 BCG_0042 BCG_0043   trpG_2 FALSE 0.371 37.000 0.098 NA   NA
 2098315 2098316 BCG_0044c BCG_0045c pknB pknA TRUE 0.999 -3.000 0.426 0.005 Y NA
 2098316 2098317 BCG_0045c BCG_0046c pknA pbpA TRUE 0.988 -3.000 0.574 1.000 N NA
 2098317 2098318 BCG_0046c BCG_0047c pbpA rodA TRUE 0.968 -3.000 0.250 1.000 N NA
 2098318 2098319 BCG_0047c BCG_0048c rodA pstP TRUE 0.948 -3.000 0.145 1.000 N NA
 2098319 2098320 BCG_0048c BCG_0049c pstP   TRUE 0.735 89.000 0.216 NA Y NA
 2098320 2098321 BCG_0049c BCG_0050c   TB39.8 FALSE 0.157 124.000 0.069 NA   NA
 2098323 2098324 BCG_0051c BCG_0052c   whiB5 FALSE 0.077 142.000 0.000 1.000   NA
 2098325 2098326 BCG_0053 BCG_0054     TRUE 0.990 -3.000 0.600 NA   NA
 2098326 2098327 BCG_0054 BCG_0055     FALSE 0.192 -258.000 0.000 NA   NA
 2098327 2098328 BCG_0055 BCG_0056     FALSE 0.170 38.000 0.000 NA   NA
 2098328 2098329 BCG_0056 BCG_0057     TRUE 0.686 115.000 1.000 NA   NA
 2098329 2098330 BCG_0057 BCG_0058     TRUE 0.736 38.000 0.600 NA   NA
 2098330 2098331 BCG_0058 BCG_0059     TRUE 0.966 8.000 0.800 NA   NA
 2098331 2098332 BCG_0059 BCG_0060     FALSE 0.011 238.000 0.000 NA   NA
 2098332 2098333 BCG_0060 BCG_0061     TRUE 0.794 70.000 1.000 NA   NA
 2098333 2098334 BCG_0061 BCG_0062     FALSE 0.203 29.000 0.000 NA   NA
 2098334 2098335 BCG_0062 BCG_0063   bioF2 FALSE 0.003 501.000 0.000 NA   NA
 2098335 2098336 BCG_0063 BCG_0064 bioF2 acpA TRUE 0.793 -3.000 0.000 1.000 N NA
 2098336 2098337 BCG_0064 BCG_0065 acpA   TRUE 0.876 -3.000 0.000 NA   NA
 2098337 2098338 BCG_0065 BCG_0066   fadD34 TRUE 0.876 -3.000 0.000 NA   NA
 2098339 2098340 BCG_0067c BCG_0068c     FALSE 0.391 48.000 0.174 NA   NA
 2098342 2098343 BCG_0070c BCG_0071c   mtc28 TRUE 0.761 82.000 0.875 NA   NA
 2098345 2098346 BCG_0073c BCG_0074c     FALSE 0.504 159.000 0.000 0.035 Y NA
 2098346 2098347 BCG_0074c BCG_0075c     FALSE 0.272 133.000 0.412 NA N NA
 2098347 2098348 BCG_0075c BCG_0076c     TRUE 0.712 16.000 0.235 NA   NA
 2098348 2098349 BCG_0076c BCG_0077c   ino1 FALSE 0.315 82.000 0.059 1.000   NA
 2098349 2098350 BCG_0077c BCG_0078c ino1   TRUE 0.618 61.000 0.608 NA N NA
 2098350 2098351 BCG_0078c BCG_0079c     FALSE 0.267 101.000 0.122 NA   NA
 2098352 2098353 BCG_0080 BCG_0081   ponA1 FALSE 0.013 419.000 0.200 NA   NA
 2098353 2098354 BCG_0081 BCG_0082 ponA1   TRUE 0.967 -3.000 0.204 NA   NA
 2098354 2098355 BCG_0082 BCG_0083     FALSE 0.360 32.000 0.061 NA   NA
 2098355 2098356 BCG_0083 BCG_0084   rpsF FALSE 0.020 219.000 0.002 NA   NA
 2098356 2098357 BCG_0084 BCG_0085 rpsF ssb FALSE 0.141 104.000 0.029 1.000 N NA
 2098357 2098358 BCG_0085 BCG_0086 ssb rpsR1 FALSE 0.216 42.000 0.030 1.000 N NA
 2098358 2098359 BCG_0086 BCG_0087 rpsR1 rplI TRUE 0.959 33.000 0.499 0.020 Y NA
 2098359 2098360 BCG_0087 BCG_0088 rplI   FALSE 0.203 29.000 0.000 NA   NA
 2098360 2098361 BCG_0088 BCG_0089   dnaB FALSE 0.315 -21.000 0.000 NA   NA
 2098361 2098362 BCG_0089 BCG_0090 dnaB   FALSE 0.024 180.000 0.000 NA   NA
 2098362 2098363 BCG_0090 BCG_0091     TRUE 0.756 17.000 0.317 NA   NA
 2098363 2098364 BCG_0091 BCG_0092     FALSE 0.243 24.000 0.000 NA   NA
 2098364 2098365 BCG_0092 BCG_0093   celA1 FALSE 0.053 136.000 0.000 NA   NA
 2098365 2098366 BCG_0093 BCG_0094 celA1   FALSE 0.007 229.000 0.000 1.000 N NA
 2098366 2098367 BCG_0094 BCG_0095     FALSE 0.015 258.000 0.000 1.000   NA
 2098367 2098368 BCG_0095 BCG_0095A     FALSE 0.206 67.000 0.000 1.000   NA
 2098368 2098369 BCG_0095A BCG_0096     FALSE 0.490 -7.000 0.000 NA   NA
 2098370 2098371 BCG_0097c BCG_0098c icd2   FALSE 0.042 118.000 0.000 1.000 N NA
 2098373 2098374 BCG_0100c BCG_0101c sdaA glyA2 TRUE 0.993 -3.000 0.118 1.000 Y NA
 2098375 2098376 BCG_0102 BCG_0103     FALSE 0.002 431.000 0.000 1.000 N NA
 2098376 2098377 BCG_0103 BCG_0104     TRUE 0.986 3.000 1.000 1.000 N NA
 2098377 2098378 BCG_0104 BCG_0105     FALSE 0.072 80.000 0.000 1.000 N NA
 2098378 2098379 BCG_0105 BCG_0106     FALSE 0.265 13.000 0.000 1.000 N NA
 2098380 2098381 BCG_0107c BCG_0108c     FALSE 0.134 64.000 0.000 NA   NA
 2098383 2098384 BCG_0110c BCG_0111c     TRUE 0.876 -3.000 0.000 NA   NA
 2098385 2098386 BCG_0112 BCG_0113     TRUE 0.876 -3.000 0.000 NA   NA
 2098386 2098387 BCG_0113 BCG_0114     FALSE 0.183 95.000 0.000 1.000   NA
 2098387 2098388 BCG_0114 BCG_0115     TRUE 0.777 5.000 0.043 1.000 N NA
 2098388 2098389 BCG_0115 BCG_0116     TRUE 0.997 -3.000 0.085 0.007 Y NA
 2098389 2098390 BCG_0116 BCG_0117   hycD TRUE 0.995 0.000 0.398 1.000 Y NA
 2098390 2098391 BCG_0117 BCG_0118 hycD hycP TRUE 0.982 11.000 0.679 NA Y NA
 2098391 2098392 BCG_0118 BCG_0119 hycP hycQ TRUE 0.997 0.000 0.864 NA Y NA
 2098392 2098393 BCG_0119 BCG_0120 hycQ hycE TRUE 0.999 -3.000 0.659 0.007 Y NA
 2098393 2098394 BCG_0120 BCG_0121 hycE   FALSE 0.178 35.000 0.000 NA   NA
 2098394 2098395 BCG_0121 BCG_0122     FALSE 0.035 157.000 0.000 NA   NA
 2098395 2098396 BCG_0122 BCG_0123     FALSE 0.063 129.000 0.000 NA   NA
 2098396 2098397 BCG_0123 BCG_0124   mtn FALSE 0.003 434.000 0.000 NA   NA
 2098397 2098398 BCG_0124 BCG_0125 mtn ctpA FALSE 0.033 132.000 0.000 1.000 N NA
 2098399 2098400 BCG_0126c BCG_0127c     FALSE 0.152 47.000 0.000 NA   NA
 2098400 2098401 BCG_0127c BCG_0128c     FALSE 0.198 -229.000 0.000 NA   NA
 2098402 2098403 BCG_0129 BCG_0130 PPE1   FALSE 0.439 19.000 0.167 NA N NA
 2098403 2098404 BCG_0130 BCG_0131     TRUE 0.988 -3.000 0.500 NA   NA
 2098404 2098405 BCG_0131 BCG_0132   fadD10 TRUE 0.956 5.000 0.444 NA   NA
 2098405 2098406 BCG_0132 BCG_0133 fadD10   TRUE 0.981 5.000 0.800 1.000   NA
 2098406 2098407 BCG_0133 BCG_0134   nrp TRUE 0.930 -18.000 0.364 0.012   NA
 2098407 2098408 BCG_0134 BCG_0135 nrp   FALSE 0.026 175.000 0.000 NA   NA
 2098413 2098414 BCG_0140c BCG_0141c ctpI   FALSE 0.004 354.000 0.000 NA   NA
 2098415 2098416 BCG_0142 BCG_0143 PE_PGRS1   FALSE 0.105 148.000 0.091 NA   NA
 2098416 2098417 BCG_0143 BCG_0144     FALSE 0.040 181.000 0.000 1.000   NA
 2098417 2098418 BCG_0144 BCG_0145   gca FALSE 0.004 282.000 0.000 1.000 N NA
 2098418 2098419 BCG_0145 BCG_0146 gca gmhA FALSE 0.074 74.000 0.000 1.000 N NA
 2098419 2098420 BCG_0146 BCG_0147 gmhA   FALSE 0.111 32.000 0.000 1.000 N NA
 2098420 2098421 BCG_0147 BCG_0149     TRUE 0.898 0.000 0.000 1.000   NA
 2098426 2098427 BCG_0154c BCG_0155c fusA2b   FALSE 0.120 136.000 0.009 1.000   NA
 2098428 2098429 BCG_0156 BCG_0157     TRUE 0.876 -3.000 0.000 NA   NA
 2098429 2098430 BCG_0157 BCG_0158   PE_PGRS2 FALSE 0.006 309.000 0.000 NA   NA
 2098430 2098431 BCG_0158 BCG_0159 PE_PGRS2 pepA FALSE 0.038 152.000 0.000 NA   NA
 2098431 2098432 BCG_0159 BCG_0160 pepA treS FALSE 0.105 109.000 0.013 1.000 N NA
 2098432 2098433 BCG_0160 BCG_0161 treS   TRUE 0.641 103.000 0.071 NA Y NA
 2098433 2098434 BCG_0161 BCG_0162     FALSE 0.320 68.000 0.136 NA   NA
 2098437 2098438 BCG_0165c BCG_0166c fadE1 fgd2 FALSE 0.425 42.000 0.286 NA N NA
 2098439 2098440 BCG_0167 BCG_0168     FALSE 0.003 420.000 0.000 NA   NA
 2098440 2098441 BCG_0168 BCG_0169     TRUE 0.837 0.000 0.000 NA   NA
 2098441 2098442 BCG_0169 BCG_0170     TRUE 0.778 2.000 0.000 NA   NA
 2098446 2098447 BCG_0174 BCG_0175     TRUE 0.979 1.000 0.538 NA   NA
 2098447 2098448 BCG_0175 BCG_0176     FALSE 0.244 61.000 0.034 NA   NA
 2098452 2098453 BCG_0180 BCG_0181     FALSE 0.555 89.000 0.571 NA N NA
 2098453 2098454 BCG_0181 BCG_0182     TRUE 0.896 43.000 0.556 NA Y NA
 2098454 2098455 BCG_0182 BCG_0183     FALSE 0.473 95.000 0.444 NA N NA
 2098455 2098456 BCG_0183 BCG_0184     TRUE 0.750 75.000 0.875 1.000 N NA
 2098456 2098457 BCG_0184 BCG_0185     TRUE 0.960 7.000 0.700 1.000 N NA
 2098458 2098459 BCG_0186c BCG_0187c   PE1 FALSE 0.002 591.000 0.000 NA   NA
 2098459 2098460 BCG_0187c BCG_0188c PE1 PE2 FALSE 0.535 10.000 0.000 NA   NA
 2098460 2098461 BCG_0188c BCG_0189c PE2 ptbB FALSE 0.009 259.000 0.000 NA   NA
 2098461 2098462 BCG_0189c BCG_0190c ptbB fadE2 TRUE 0.931 2.000 0.226 1.000 N NA
 2098463 2098464 BCG_0191 BCG_0192 pntAa pntAb TRUE 0.997 1.000 0.829 0.001   NA
 2098464 2098465 BCG_0192 BCG_0193 pntAb pntB TRUE 0.996 -3.000 0.321 0.001   NA
 2098465 2098466 BCG_0193 BCG_0194 pntB   FALSE 0.003 306.000 0.000 1.000 N NA
 2098467 2098468 BCG_0195c BCG_0196c PE3 PE4 FALSE 0.117 92.000 0.000 NA   NA
 2098471 2098472 BCG_0199 BCG_0200   TB18.5 FALSE 0.235 54.000 0.020 NA   NA
 2098474 2098475 BCG_0203 BCG_0204 fadD5 yrbE1A FALSE 0.153 204.000 0.000 NA Y NA
 2098475 2098476 BCG_0204 BCG_0205 yrbE1A yrbE1B TRUE 0.997 2.000 1.000 NA Y NA
 2098476 2098477 BCG_0205 BCG_0206 yrbE1B mce1A TRUE 0.995 5.000 1.000 NA Y NA
 2098477 2098478 BCG_0206 BCG_0207 mce1A mce1B TRUE 0.999 -3.000 0.500 0.008 Y NA
 2098478 2098479 BCG_0207 BCG_0208 mce1B mce1C TRUE 0.999 -3.000 1.000 0.008 Y NA
 2098479 2098480 BCG_0208 BCG_0209 mce1C mce1D TRUE 0.999 -3.000 1.000 0.008 Y NA
 2098480 2098481 BCG_0209 BCG_0210 mce1D lprK TRUE 0.999 -3.000 0.500 0.008 Y NA
 2098481 2098482 BCG_0210 BCG_0211 lprK mce1F TRUE 0.996 -6.000 0.800 0.008 Y NA
 2098482 2098483 BCG_0211 BCG_0212 mce1F   FALSE 0.558 36.000 0.286 NA   NA
 2098483 2098484 BCG_0212 BCG_0213     TRUE 0.992 -3.000 0.750 NA   NA
 2098484 2098485 BCG_0213 BCG_0214     TRUE 0.995 -3.000 1.000 NA   NA
 2098485 2098486 BCG_0214 BCG_0215     TRUE 0.896 -33.000 1.000 NA   NA
 2098487 2098488 BCG_0216c BCG_0217c lprO   FALSE 0.504 80.000 0.333 NA   NA
 2098488 2098489 BCG_0217c BCG_0218c     FALSE 0.213 27.000 0.000 NA   NA
 2098489 2098490 BCG_0218c BCG_0219c   sigG FALSE 0.317 17.000 0.000 NA   NA
 2098491 2098492 BCG_0220 BCG_0221     FALSE 0.327 42.000 0.068 NA   NA
 2098492 2098493 BCG_0221 BCG_0222     TRUE 0.990 -3.000 0.600 NA   NA
 2098493 2098494 BCG_0222 BCG_0223   bglS FALSE 0.562 45.000 0.273 1.000   NA
 2098494 2098495 BCG_0223 BCG_0224 bglS   FALSE 0.007 361.000 0.000 1.000   NA
 2098495 2098496 BCG_0224 BCG_0225     FALSE 0.073 119.000 0.000 NA   NA
 2098498 2098499 BCG_0227 BCG_0228     FALSE 0.173 128.000 0.125 NA   NA
 2098499 2098500 BCG_0228 BCG_0229     FALSE 0.542 77.000 0.375 NA   NA
 2098502 2098503 BCG_0231 BCG_0232     FALSE 0.002 438.000 0.000 1.000 N NA
 2098503 2098504 BCG_0232 BCG_0233     FALSE 0.368 113.000 0.000 0.060   NA
 2098504 2098505 BCG_0233 BCG_0234     TRUE 0.973 0.000 0.276 1.000   NA
 2098507 2098508 BCG_0236 BCG_0237     TRUE 0.995 -3.000 1.000 NA   NA
 2098509 2098510 BCG_0238c BCG_0239c   mmpL11 TRUE 0.994 -3.000 0.750 1.000   NA
 2098514 2098515 BCG_0243c BCG_0244c mmpL3   FALSE 0.402 66.000 0.217 NA   NA
 2098515 2098516 BCG_0244c BCG_0245c     TRUE 0.865 3.000 0.040 NA   NA
 2098517 2098518 BCG_0246 BCG_0247     TRUE 0.988 -3.000 0.529 NA   NA
 2098518 2098519 BCG_0247 BCG_0248   pckA FALSE 0.043 184.000 0.026 NA   NA
 2098520 2098521 BCG_0249c BCG_0250c nadR   TRUE 0.793 -3.000 0.000 1.000 N NA
 2098526 2098527 BCG_0255 BCG_0256     TRUE 0.951 2.000 0.273 NA   NA
 2098527 2098528 BCG_0256 BCG_0257   lipC TRUE 0.812 10.000 0.182 NA   NA
 2098528 2098529 BCG_0257 BCG_0258 lipC   TRUE 0.940 14.000 1.000 NA   NA
 2098530 2098531 BCG_0259c BCG_0260c     TRUE 0.979 -3.000 0.000 0.063   NA
 2098531 2098532 BCG_0260c BCG_0261c     FALSE 0.326 99.000 0.104 1.000   NA
 2098534 2098535 BCG_0263c BCG_0264c     TRUE 0.863 10.000 0.265 NA   NA
 2098537 2098538 BCG_0266c BCG_0267c   php TRUE 0.876 -3.000 0.000 NA   NA
 2098539 2098540 BCG_0268 BCG_0269 fadE4   FALSE 0.198 135.000 0.250 1.000 N NA
 2098540 2098541 BCG_0269 BCG_0270   nrdB TRUE 0.979 -3.000 0.357 1.000 N NA
 2098542 2098543 BCG_0271c BCG_0272c gabD1   FALSE 0.222 26.000 0.000 NA   NA
 2098543 2098544 BCG_0272c BCG_0273c     FALSE 0.331 35.000 0.053 NA   NA
 2098544 2098545 BCG_0273c BCG_0274c     TRUE 0.683 47.000 0.526 NA   NA
 2098546 2098547 BCG_0275 BCG_0276 lpqI   FALSE 0.311 76.000 0.185 1.000 N NA
 2098547 2098548 BCG_0276 BCG_0277     FALSE 0.135 62.000 0.000 NA   NA
 2098548 2098549 BCG_0277 BCG_0278     TRUE 0.590 8.000 0.000 NA   NA
 2098550 2098551 BCG_0279c BCG_0280c   fabG4 TRUE 0.974 11.000 0.412 1.000 Y NA
 2098554 2098555 BCG_0283 BCG_0284     FALSE 0.005 316.000 0.000 NA   NA
 2098556 2098557 BCG_0285c BCG_0286c     TRUE 0.999 1.000 0.826 0.004 Y NA
 2098557 2098558 BCG_0286c BCG_0287c     TRUE 0.843 31.000 0.860 NA   NA
 2098558 2098559 BCG_0287c BCG_0288c     FALSE 0.339 80.000 0.171 NA   NA
 2098559 2098560 BCG_0288c BCG_0289c   hsp FALSE 0.112 145.000 0.091 NA   NA
 2098561 2098562 BCG_0290 BCG_0291 nirB nirD TRUE 0.865 26.000 0.286 0.001 N NA
 2098563 2098564 BCG_0292c BCG_0293c cobU cobQ1 TRUE 0.831 25.000 0.031 1.000 Y NA
 2098564 2098565 BCG_0293c BCG_0294c cobQ1 PPE2 FALSE 0.028 19.000 0.000 NA N NA
 2098567 2098568 BCG_0296c BCG_0297c     FALSE 0.517 25.000 0.071 1.000   NA
 2098568 2098569 BCG_0297c BCG_0298c     TRUE 0.971 -3.000 0.173 1.000   NA
 2098569 2098570 BCG_0298c BCG_0299c   narK3 FALSE 0.009 100.000 0.000 NA N NA
 2098570 2098571 BCG_0299c BCG_0300c narK3 aac FALSE 0.047 141.000 0.000 NA   NA
 2098571 2098572 BCG_0300c BCG_0301c aac   TRUE 0.766 10.000 0.101 NA   NA
 2098572 2098573 BCG_0301c BCG_0302c     TRUE 0.955 17.000 0.551 NA Y NA
 2098573 2098574 BCG_0302c BCG_0303c     FALSE 0.178 96.000 0.050 1.000 N NA
 2098574 2098575 BCG_0303c BCG_0304c   oplA FALSE 0.160 22.000 0.000 1.000 N NA
 2098577 2098578 BCG_0306c BCG_0307c     FALSE 0.011 65.000 0.000 NA N NA
 2098580 2098581 BCG_0309c BCG_0310c fadE6   FALSE 0.080 114.000 0.000 NA   NA
 2098581 2098582 BCG_0310c BCG_0311c     TRUE 0.994 -3.000 0.833 NA   NA
 2098586 2098587 BCG_0315c BCG_0315A     FALSE 0.243 24.000 0.000 NA   NA
 2098587 2098588 BCG_0315A BCG_0316c   PE_PGRS3b FALSE 0.280 20.000 0.000 NA   NA
 2098588 2098589 BCG_0316c BCG_0317c PE_PGRS3b PE_PGRS3a FALSE 0.207 -177.000 0.000 NA   NA
 2098589 2098590 BCG_0317c BCG_0318c PE_PGRS3a PE_PGRS3 FALSE 0.009 264.000 0.000 NA   NA
 11402759 2098586   BCG_0315c     FALSE NA 406.000 0.000 NA   NA
 11545122 2098586   BCG_0315c     FALSE NA 406.000 0.000 NA   NA
 11687514 2098586   BCG_0315c     FALSE NA 406.000 0.000 NA   NA
 11402760 2098586   BCG_0315c     FALSE NA 427.000 0.000 NA   NA
 11545123 2098586   BCG_0315c     FALSE NA 427.000 0.000 NA   NA
 11687515 2098586   BCG_0315c     FALSE NA 427.000 0.000 NA   NA
 11402761 2098586   BCG_0315c     FALSE NA 454.000 0.000 NA   NA
 11545124 2098586   BCG_0315c     FALSE NA 454.000 0.000 NA   NA
 11687516 2098586   BCG_0315c     FALSE NA 454.000 0.000 NA   NA
 11402762 2098586   BCG_0315c     FALSE NA 475.000 0.000 NA   NA
 11545125 2098586   BCG_0315c     FALSE NA 475.000 0.000 NA   NA
 11687517 2098586   BCG_0315c     FALSE NA 475.000 0.000 NA   NA
 11402763 2098586   BCG_0315c     FALSE NA 529.000 0.000 NA   NA
 11545126 2098586   BCG_0315c     FALSE NA 529.000 0.000 NA   NA
 11687518 2098586   BCG_0315c     FALSE NA 529.000 0.000 NA   NA
 11402764 2098586   BCG_0315c     FALSE NA 550.000 0.000 NA   NA
 11545127 2098586   BCG_0315c     FALSE NA 550.000 0.000 NA   NA
 11687519 2098586   BCG_0315c     FALSE NA 550.000 0.000 NA   NA
 11402765 2098586   BCG_0315c     FALSE NA 583.000 0.000 NA   NA
 11545128 2098586   BCG_0315c     FALSE NA 583.000 0.000 NA   NA
 11687520 2098586   BCG_0315c     FALSE NA 583.000 0.000 NA   NA
 11402766 2098586   BCG_0315c     FALSE NA 604.000 0.000 NA   NA
 11545129 2098586   BCG_0315c     FALSE NA 604.000 0.000 NA   NA
 11687521 2098586   BCG_0315c     FALSE NA 604.000 0.000 NA   NA
 11402767 2098586   BCG_0315c     FALSE NA 628.000 0.000 NA   NA
 11545130 2098586   BCG_0315c     FALSE NA 628.000 0.000 NA   NA
 11687522 2098586   BCG_0315c     FALSE NA 628.000 0.000 NA   NA
 11402768 2098586   BCG_0315c     FALSE NA 649.000 0.000 NA   NA
 11545131 2098586   BCG_0315c     FALSE NA 649.000 0.000 NA   NA
 11687523 2098586   BCG_0315c     FALSE NA 649.000 0.000 NA   NA
 11402769 2098586   BCG_0315c     FALSE NA 676.000 0.000 NA   NA
 11545132 2098586   BCG_0315c     FALSE NA 676.000 0.000 NA   NA
 11687524 2098586   BCG_0315c     FALSE NA 676.000 0.000 NA   NA
 11402770 2098586   BCG_0315c     FALSE NA 697.000 0.000 NA   NA
 11545133 2098586   BCG_0315c     FALSE NA 697.000 0.000 NA   NA
 11687525 2098586   BCG_0315c     FALSE NA 697.000 0.000 NA   NA
 11402771 2098586   BCG_0315c     FALSE NA 733.000 0.000 NA   NA
 11545134 2098586   BCG_0315c     FALSE NA 733.000 0.000 NA   NA
 11687526 2098586   BCG_0315c     FALSE NA 733.000 0.000 NA   NA
 11402772 2098586   BCG_0315c     FALSE NA 754.000 0.000 NA   NA
 11545135 2098586   BCG_0315c     FALSE NA 754.000 0.000 NA   NA
 11687527 2098586   BCG_0315c     FALSE NA 754.000 0.000 NA   NA
 11402773 2098586   BCG_0315c     FALSE NA 781.000 0.000 NA   NA
 11545136 2098586   BCG_0315c     FALSE NA 781.000 0.000 NA   NA
 11687528 2098586   BCG_0315c     FALSE NA 781.000 0.000 NA   NA
 11402774 2098586   BCG_0315c     FALSE NA 802.000 0.000 NA   NA
 11545137 2098586   BCG_0315c     FALSE NA 802.000 0.000 NA   NA
 11687529 2098586   BCG_0315c     FALSE NA 802.000 0.000 NA   NA
 11402775 2098586   BCG_0315c     FALSE NA 829.000 0.000 NA   NA
 11545138 2098586   BCG_0315c     FALSE NA 829.000 0.000 NA   NA
 11687530 2098586   BCG_0315c     FALSE NA 829.000 0.000 NA   NA
 11402776 2098586   BCG_0315c     FALSE NA 850.000 0.000 NA   NA
 11545139 2098586   BCG_0315c     FALSE NA 850.000 0.000 NA   NA
 11687531 2098586   BCG_0315c     FALSE NA 850.000 0.000 NA   NA
 11402777 2098586   BCG_0315c     FALSE NA 874.000 0.000 NA   NA
 11545140 2098586   BCG_0315c     FALSE NA 874.000 0.000 NA   NA
 11687532 2098586   BCG_0315c     FALSE NA 874.000 0.000 NA   NA
 11402778 2098586   BCG_0315c     FALSE NA 895.000 0.000 NA   NA
 11545141 2098586   BCG_0315c     FALSE NA 895.000 0.000 NA   NA
 11687533 2098586   BCG_0315c     FALSE NA 895.000 0.000 NA   NA
 11402779 2098586   BCG_0315c     FALSE NA 928.000 0.000 NA   NA
 11545142 2098586   BCG_0315c     FALSE NA 928.000 0.000 NA   NA
 11687534 2098586   BCG_0315c     FALSE NA 928.000 0.000 NA   NA
 11402780 2098586   BCG_0315c     FALSE NA 949.000 0.000 NA   NA
 11545143 2098586   BCG_0315c     FALSE NA 949.000 0.000 NA   NA
 11687535 2098586   BCG_0315c     FALSE NA 949.000 0.000 NA   NA
 11402781 2098586   BCG_0315c     FALSE NA 1000.000 0.000 NA   NA
 11545144 2098586   BCG_0315c     FALSE NA 1000.000 0.000 NA   NA
 11687536 2098586   BCG_0315c     FALSE NA 1000.000 0.000 NA   NA
 11402782 2098586   BCG_0315c     FALSE NA 1021.000 0.000 NA   NA
 11545145 2098586   BCG_0315c     FALSE NA 1021.000 0.000 NA   NA
 11687537 2098586   BCG_0315c     FALSE NA 1021.000 0.000 NA   NA
 11402783 2098586   BCG_0315c     FALSE NA 1063.000 0.000 NA   NA
 11545146 2098586   BCG_0315c     FALSE NA 1063.000 0.000 NA   NA
 11687538 2098586   BCG_0315c     FALSE NA 1063.000 0.000 NA   NA
 11402784 2098586   BCG_0315c     FALSE NA 1084.000 0.000 NA   NA
 11545147 2098586   BCG_0315c     FALSE NA 1084.000 0.000 NA   NA
 11687539 2098586   BCG_0315c     FALSE NA 1084.000 0.000 NA   NA
 11402785 2098586   BCG_0315c     FALSE NA 1108.000 0.000 NA   NA
 11545148 2098586   BCG_0315c     FALSE NA 1108.000 0.000 NA   NA
 11687540 2098586   BCG_0315c     FALSE NA 1108.000 0.000 NA   NA
 11402786 2098586   BCG_0315c     FALSE NA 1129.000 0.000 NA   NA
 11545149 2098586   BCG_0315c     FALSE NA 1129.000 0.000 NA   NA
 11687541 2098586   BCG_0315c     FALSE NA 1129.000 0.000 NA   NA
 11402787 2098586   BCG_0315c     FALSE NA 1156.000 0.000 NA   NA
 11545150 2098586   BCG_0315c     FALSE NA 1156.000 0.000 NA   NA
 11687542 2098586   BCG_0315c     FALSE NA 1156.000 0.000 NA   NA
 11402788 2098586   BCG_0315c     FALSE NA 1177.000 0.000 NA   NA
 11545151 2098586   BCG_0315c     FALSE NA 1177.000 0.000 NA   NA
 11687543 2098586   BCG_0315c     FALSE NA 1177.000 0.000 NA   NA
 11402789 2098586   BCG_0315c     FALSE NA 1198.000 0.000 NA   NA
 11545152 2098586   BCG_0315c     FALSE NA 1198.000 0.000 NA   NA
 11687544 2098586   BCG_0315c     FALSE NA 1198.000 0.000 NA   NA
 11402790 2098586   BCG_0315c     FALSE NA 1219.000 0.000 NA   NA
 11545153 2098586   BCG_0315c     FALSE NA 1219.000 0.000 NA   NA
 11687545 2098586   BCG_0315c     FALSE NA 1219.000 0.000 NA   NA
 11402791 2098586   BCG_0315c     FALSE NA 1246.000 0.000 NA   NA
 11545154 2098586   BCG_0315c     FALSE NA 1246.000 0.000 NA   NA
 11687546 2098586   BCG_0315c     FALSE NA 1246.000 0.000 NA   NA
 11402792 2098586   BCG_0315c     FALSE NA 1267.000 0.000 NA   NA
 11545155 2098586   BCG_0315c     FALSE NA 1267.000 0.000 NA   NA
 11687547 2098586   BCG_0315c     FALSE NA 1267.000 0.000 NA   NA
 11402793 2098586   BCG_0315c     FALSE NA 1291.000 0.000 NA   NA
 11545156 2098586   BCG_0315c     FALSE NA 1291.000 0.000 NA   NA
 11687548 2098586   BCG_0315c     FALSE NA 1291.000 0.000 NA   NA
 2098590 2098591 BCG_0318c BCG_0319c PE_PGRS3 PE_PGRS4 FALSE 0.010 250.000 0.000 NA   NA
 2098592 2098593 BCG_0320 BCG_0321 PPE3   TRUE 0.789 24.000 0.667 NA N NA
 2098593 2098594 BCG_0321 BCG_0322     FALSE 0.013 225.000 0.000 NA   NA
 2098594 2098595 BCG_0322 BCG_0323     TRUE 0.995 -3.000 1.000 NA   NA
 2098595 2098596 BCG_0323 BCG_0324     TRUE 0.992 -3.000 0.750 NA   NA
 2098596 2098597 BCG_0324 BCG_0325   PE5 TRUE 0.981 -3.000 0.333 NA   NA
 2098597 2098598 BCG_0325 BCG_0326 PE5 PPE4 TRUE 0.972 3.000 0.500 NA   NA
 2098598 2098599 BCG_0326 BCG_0327 PPE4 esxG FALSE 0.149 49.000 0.000 NA   NA
 2098599 2098600 BCG_0327 BCG_0328 esxG esxH FALSE 0.198 30.000 0.000 NA   NA
 2098600 2098601 BCG_0328 BCG_0329 esxH   FALSE 0.485 11.000 0.000 NA   NA
 2098601 2098602 BCG_0329 BCG_0330     TRUE 0.790 47.000 0.818 NA   NA
 2098602 2098603 BCG_0330 BCG_0331     TRUE 0.989 -3.000 0.556 NA   NA
 2098603 2098604 BCG_0331 BCG_0332     TRUE 0.989 -3.000 0.556 NA   NA
 2098607 2098608 BCG_0335c BCG_0336c     TRUE 0.773 10.000 0.118 NA   NA
 2098609 2098610 BCG_0337 BCG_0338 PE_PGRS5   FALSE 0.075 143.000 0.000 1.000   NA
 2098610 2098611 BCG_0338 BCG_0339     TRUE 0.876 -3.000 0.000 NA   NA
 2098611 2098612 BCG_0339 BCG_0340     FALSE 0.151 48.000 0.000 NA   NA
 2098612 2098613 BCG_0340 BCG_0341     TRUE 0.986 -3.000 0.444 NA   NA
 2098613 2098614 BCG_0341 BCG_0342     FALSE 0.051 137.000 0.000 NA   NA
 2098614 2098615 BCG_0342 BCG_0343     TRUE 0.793 -3.000 0.000 1.000 N NA
 2098616 2098617 BCG_0344c BCG_0345c PPE5 PPE6 FALSE 0.327 144.000 0.000 NA Y NA
 2098620 2098621 BCG_0348 BCG_0349     FALSE 0.230 102.000 0.067 NA   NA
 2098623 2098624 BCG_0351 BCG_0352     FALSE 0.250 155.000 0.333 1.000   NA
 2098624 2098625 BCG_0352 BCG_0353     FALSE 0.130 72.000 0.000 NA   NA
 2098627 2098628 BCG_0355 BCG_0356     FALSE 0.467 49.000 0.286 1.000 N NA
 2098629 5582074 BCG_0357c BCG_t02 glpQ2 tRNA-Gly FALSE 0.009 261.000 0.000 NA   NA
 5582074 2098631 BCG_t02 BCG_0358c tRNA-Gly   FALSE 0.193 31.000 0.000 NA   NA
 2098632 2098633 BCG_0359 BCG_0360 pcp   FALSE 0.130 72.000 0.000 NA   NA
 2098633 2098634 BCG_0360 BCG_0361   dcd FALSE 0.270 32.000 0.007 NA   NA
 2098634 2098635 BCG_0361 BCG_0362 dcd udgA FALSE 0.055 106.000 0.000 1.000 N NA
 2098637 2098638 BCG_0364 BCG_0365     TRUE 0.734 7.000 0.000 1.000   NA
 2098641 2098642 BCG_0368c BCG_0369c     FALSE 0.316 27.000 0.000 1.000   NA
 2098643 2098644 BCG_0370 BCG_0371     FALSE 0.129 75.000 0.000 NA   NA
 2098644 2098645 BCG_0371 BCG_0372     TRUE 0.681 27.000 0.368 NA   NA
 2098645 2098646 BCG_0372 BCG_0373   rmlA TRUE 0.581 30.000 0.273 NA   NA
 2098649 2098650 BCG_0376c BCG_0377c aspC   FALSE 0.241 31.000 0.023 1.000 N NA
 2098650 2098651 BCG_0377c BCG_0378c     FALSE 0.149 109.000 0.057 1.000 N NA
 2098652 2098653 BCG_0379 BCG_0380   iniB FALSE 0.114 189.000 0.286 NA   NA
 2098653 2098654 BCG_0380 BCG_0381 iniB iniA TRUE 0.739 37.000 0.500 1.000   NA
 2098654 2098655 BCG_0381 BCG_0382 iniA iniC TRUE 0.997 -3.000 0.583 0.007   NA
 2098659 2098660 BCG_0386 BCG_0387     TRUE 0.752 3.000 0.000 NA   NA
 2098660 2098661 BCG_0387 BCG_0388     TRUE 0.752 3.000 0.000 NA   NA
 2098661 2098662 BCG_0388 BCG_0389   dnaK FALSE 0.013 227.000 0.000 NA   NA
 2098662 2098663 BCG_0389 BCG_0390 dnaK grpE TRUE 0.997 -3.000 0.074 0.005 Y NA
 2098663 2098664 BCG_0390 BCG_0391 grpE dnaJ1 TRUE 0.913 36.000 0.068 0.005 Y NA
 2098664 2098665 BCG_0391 BCG_0392 dnaJ1 hspR TRUE 0.911 0.000 0.074 1.000 N NA
 2098666 2098667 BCG_0393c BCG_0394c PPE8   FALSE 0.039 151.000 0.000 NA   NA
 2098667 2098668 BCG_0394c BCG_0395c   purA TRUE 0.942 -3.000 0.052 NA   NA
 2098669 2098670 BCG_0396 BCG_0397     TRUE 0.633 11.000 0.020 NA   NA
 2098672 2098673 BCG_0399 BCG_0400   mgtE FALSE 0.013 222.000 0.000 NA   NA
 2098676 2098677 BCG_0403c BCG_0404c     TRUE 0.673 25.000 0.000 0.051   NA
 2098677 2098678 BCG_0404c BCG_0405c     FALSE 0.203 29.000 0.000 NA   NA
 2098678 2098679 BCG_0405c BCG_0406c     FALSE 0.124 81.000 0.000 NA   NA
 2098679 2098680 BCG_0406c BCG_0407c     TRUE 0.886 6.000 0.208 NA   NA
 2098680 2098681 BCG_0407c BCG_0408c     FALSE 0.385 101.000 0.250 NA   NA
 2098681 2098682 BCG_0408c BCG_0409c     TRUE 0.966 -3.000 0.200 NA   NA
 2098682 2098683 BCG_0409c BCG_0410c     TRUE 0.981 -3.000 0.333 NA   NA
 2098683 2098684 BCG_0410c BCG_0411c     TRUE 0.848 19.000 0.750 NA N NA
 2098684 2098685 BCG_0411c BCG_0412c     TRUE 0.999 -3.000 0.818 0.001 Y NA
 2098685 2098686 BCG_0412c BCG_0413c     TRUE 0.994 15.000 0.909 0.001 Y NA
 2098686 2098687 BCG_0413c BCG_0414c     FALSE 0.323 76.000 0.250 NA N NA
 2098688 2098689 BCG_0415 BCG_0416     FALSE 0.010 251.000 0.000 NA   NA
 2098689 2098690 BCG_0416 BCG_0417   secE2 FALSE 0.073 119.000 0.000 NA   NA
 2098691 2098692 BCG_0418c BCG_0419c     FALSE 0.233 96.000 0.055 NA   NA
 2098692 2098693 BCG_0419c BCG_0420c   pyrE FALSE 0.420 18.000 0.012 NA   NA
 2098693 2098694 BCG_0420c BCG_0421c pyrE   FALSE 0.182 81.000 0.006 NA   NA
 2098694 2098695 BCG_0421c BCG_0422c   clpB FALSE 0.075 141.000 0.009 NA   NA
 2098696 2098697 BCG_0423 BCG_0424     FALSE 0.059 104.000 0.000 1.000 N NA
 2098699 2098700 BCG_0426 BCG_0427 purT   TRUE 0.817 -3.000 0.019 NA N NA
 2098700 2098701 BCG_0427 BCG_0428   metZ TRUE 0.907 -3.000 0.092 NA N NA
 2098705 2098706 BCG_0432 BCG_0433     TRUE 0.648 6.000 0.000 NA   NA
 2098706 2098707 BCG_0433 BCG_0434     FALSE 0.129 74.000 0.000 NA   NA
 2098708 2098709 BCG_0435c BCG_0436c   lpqK TRUE 0.892 7.000 0.250 NA   NA
 2098709 2098710 BCG_0436c BCG_0437c lpqK fadE7 FALSE 0.384 10.000 0.000 1.000 N NA
 2098712 2098713 BCG_0439c BCG_0440c mmpL1b mmpL1a TRUE 0.979 -3.000 0.000 0.052   NA
 2098713 2098714 BCG_0440c BCG_0441c mmpL1a mmpS1 TRUE 0.995 -3.000 1.000 NA   NA
 2098715 2098716 BCG_0442 BCG_0443 fadD30 pks6a TRUE 0.998 -3.000 1.000 0.051   NA
 2098716 2098717 BCG_0443 BCG_0444 pks6a pks6b TRUE 0.838 -13.000 0.000 0.011   NA
 2098719 2098720 BCG_0446 BCG_0447 fgd1 pta TRUE 0.720 -7.000 0.021 1.000   NA
 2098720 2098721 BCG_0447 BCG_0448 pta ackA TRUE 0.825 -7.000 0.185 1.000   NA
 2098722 2098723 BCG_0449c BCG_0450c pknG glnH TRUE 0.997 0.000 0.622 1.000 Y NA
 2098723 2098724 BCG_0450c BCG_0451c glnH   TRUE 0.992 0.000 0.895 NA   NA
 2098727 2098728 BCG_0454 BCG_0455 thiO thiS TRUE 0.989 -3.000 0.625 1.000 N NA
 2098728 2098729 BCG_0455 BCG_0456 thiS thiG TRUE 0.948 -7.000 0.104 1.000 Y NA
 2098729 2098730 BCG_0456 BCG_0457 thiG lpqL FALSE 0.006 372.000 0.000 1.000   NA
 2098730 2098731 BCG_0457 BCG_0458 lpqL lpqM FALSE 0.501 88.000 0.000 0.031   NA
 2098732 2098733 BCG_0459c BCG_0460c     FALSE 0.032 161.000 0.000 NA   NA
 2098733 2098734 BCG_0460c BCG_0461c   thiD TRUE 0.944 -3.000 0.059 NA   NA
 2098734 2098735 BCG_0461c BCG_0462c thiD thiC TRUE 0.919 27.000 0.015 0.006 Y NA
 2098735 2098736 BCG_0462c BCG_0463c thiC   FALSE 0.038 152.000 0.000 NA   NA
 2098736 2098737 BCG_0463c BCG_0464c   ctpH TRUE 0.661 50.000 0.500 NA   NA
 2098737 2098738 BCG_0464c BCG_0465c ctpH   FALSE 0.467 52.000 0.250 NA   NA
 2098738 2098739 BCG_0465c BCG_0466c   xthA FALSE 0.031 201.000 0.015 NA   NA
 2098739 2098740 BCG_0466c BCG_0467c xthA   TRUE 0.892 3.000 0.088 NA   NA
 2098740 2098741 BCG_0467c BCG_0468c   def TRUE 0.982 0.000 0.488 NA   NA
 2098742 2098743 BCG_0469 BCG_0470     FALSE 0.457 32.000 0.176 NA   NA
 2098743 2098744 BCG_0470 BCG_0471   sodC TRUE 0.717 33.000 0.500 NA   NA
 2098744 2098745 BCG_0471 BCG_0472 sodC   TRUE 0.934 2.000 0.128 1.000   NA
 2098745 2098746 BCG_0472 BCG_0473     FALSE 0.282 60.000 0.010 1.000   NA
 2098747 2098748 BCG_0474c BCG_0475c   pssA TRUE 0.907 -3.000 0.025 1.000 N NA
 2098748 2098749 BCG_0475c BCG_0476c pssA psd TRUE 0.997 -3.000 0.466 1.000 Y NA
 2098749 2098750 BCG_0476c BCG_0477c psd moeA2 FALSE 0.166 61.000 0.018 1.000 N NA
 2098750 2098751 BCG_0477c BCG_0478c moeA2   TRUE 0.670 19.000 0.188 1.000   NA
 2098753 2098754 BCG_0480c BCG_0481c   PPE10 FALSE 0.213 27.000 0.000 NA   NA
 2098756 2098757 BCG_0483c BCG_0484c   sigK TRUE 0.783 44.000 0.778 NA   NA
 2098757 2098758 BCG_0484c BCG_0485c sigK   FALSE 0.374 49.000 0.065 1.000   NA
 2098758 2098759 BCG_0485c BCG_0486c   ufaA1 TRUE 0.826 9.000 0.081 1.000   NA
 2098759 2098760 BCG_0486c BCG_0487c ufaA1   TRUE 0.947 -3.000 0.067 NA   NA
 2098760 2098761 BCG_0487c BCG_0488c     TRUE 0.736 60.000 0.722 NA   NA
 2098761 2098762 BCG_0488c BCG_0489c   mmpL4 FALSE 0.321 40.000 0.007 1.000   NA
 2098762 2098763 BCG_0489c BCG_0490c mmpL4 mmpS4 TRUE 0.991 -3.000 0.667 NA   NA
 2098764 2098765 BCG_0491 BCG_0492   PPE11 FALSE 0.005 322.000 0.000 NA   NA
 2098765 2098766 BCG_0492 BCG_0493 PPE11   FALSE 0.100 105.000 0.000 NA   NA
 2098767 2098768 BCG_0494c BCG_0495c   echA2 FALSE 0.241 68.000 0.039 NA   NA
 2098768 2098769 BCG_0495c BCG_0496c echA2   FALSE 0.014 273.000 0.000 1.000   NA
 2098769 2098770 BCG_0496c BCG_0497c     FALSE 0.021 229.000 0.000 1.000   NA
 2098771 2098772 BCG_0498 BCG_0499     TRUE 0.904 0.000 0.021 NA   NA
 2098772 2098773 BCG_0499 BCG_0500     FALSE 0.255 60.000 0.042 NA   NA
 2098773 2098774 BCG_0500 BCG_0501     TRUE 0.840 38.000 1.000 NA   NA
 2098774 2098775 BCG_0501 BCG_0502   lpd FALSE 0.217 64.000 0.017 NA   NA
 2098775 2098776 BCG_0502 BCG_0503 lpd   TRUE 0.738 8.000 0.028 NA   NA
 2098777 2098778 BCG_0504c BCG_0505c     TRUE 0.977 -3.000 0.286 NA   NA
 2098779 2098780 BCG_0506 BCG_0507   icl FALSE 0.004 275.000 0.000 1.000 N NA
 2098780 2098781 BCG_0507 BCG_0508 icl fadB2 FALSE 0.172 82.000 0.036 1.000 N NA
 2098781 2098782 BCG_0508 BCG_0509 fadB2 umaA1 FALSE 0.127 133.000 0.130 1.000 N NA
 2098783 2098784 BCG_0510c BCG_0511c pcaA   FALSE 0.075 143.000 0.000 1.000   NA
 2098784 2098785 BCG_0511c BCG_0512c     FALSE 0.225 -69.000 0.000 NA   NA
 2098785 2098786 BCG_0512c BCG_0513c     FALSE 0.535 10.000 0.000 NA   NA
 2098787 2098788 BCG_0514 BCG_0515     FALSE 0.229 87.000 0.047 NA   NA
 2098788 2098789 BCG_0515 BCG_0516   hbhA FALSE 0.023 354.000 0.282 NA   NA
 2098789 2098790 BCG_0516 BCG_0517 hbhA   FALSE 0.332 112.000 0.270 NA   NA
 2098790 2098791 BCG_0517 BCG_0518     TRUE 0.876 5.000 0.143 NA   NA
 2098791 2098792 BCG_0518 BCG_0519   deoC TRUE 0.911 0.000 0.030 NA   NA
 2098793 2098794 BCG_0520c BCG_0521c     TRUE 0.951 -3.000 0.091 NA   NA
 2098794 2098795 BCG_0521c BCG_0522c     FALSE 0.352 33.000 0.061 NA   NA
 2098796 2098797 BCG_0523 BCG_0524 murB lprQ FALSE 0.243 62.000 0.036 NA   NA
 2098799 2098800 BCG_0526 BCG_0527     FALSE 0.188 48.000 0.082 NA N NA
 2098800 2098801 BCG_0527 BCG_0528     TRUE 0.989 -3.000 0.541 NA   NA
 2098801 2098802 BCG_0528 BCG_0529     FALSE 0.003 442.000 0.000 NA   NA
 2098802 2098803 BCG_0529 BCG_0530   gpm1 FALSE 0.058 157.000 0.000 1.000   NA
 2098803 2098804 BCG_0530 BCG_0531 gpm1 senX3 FALSE 0.080 174.000 0.196 1.000 N NA
 2098804 2098805 BCG_0531 BCG_0532 senX3 regX3 TRUE 0.634 151.000 0.437 1.000 Y NA
 2098806 2098807 BCG_0533c BCG_0534c     TRUE 0.978 -3.000 0.300 NA   NA
 2098807 2098808 BCG_0534c BCG_0535c     TRUE 0.966 -3.000 0.200 NA   NA
 2098811 2098812 BCG_0538 BCG_0539     TRUE 0.977 -3.000 0.286 NA   NA
 2098812 2098813 BCG_0539 BCG_0540     TRUE 0.610 16.000 0.127 NA   NA
 2098813 2098814 BCG_0540 BCG_0541     TRUE 0.575 16.000 0.076 NA   NA
 2098814 2098815 BCG_0541 BCG_0542   proC TRUE 0.562 25.000 0.143 1.000   NA
 2098815 2098816 BCG_0542 BCG_0543 proC   FALSE 0.198 141.000 0.186 1.000   NA
 2098816 2098817 BCG_0543 BCG_0544   galE2 FALSE 0.010 307.000 0.000 1.000   NA
 2098817 2098818 BCG_0544 BCG_0545 galE2   TRUE 0.966 7.000 0.796 1.000 N NA
 2098819 2098820 BCG_0546c BCG_0547c cmaA2   TRUE 0.778 23.000 0.400 1.000   NA
 2098820 2098821 BCG_0547c BCG_0548c   serB1 FALSE 0.122 162.000 0.145 1.000   NA
 2098822 2098823 BCG_0549 BCG_0550 mmpS2 mmpL2 TRUE 0.995 -3.000 1.000 NA   NA
 2098823 2098824 BCG_0550 BCG_0551 mmpL2   TRUE 0.605 -7.000 0.007 NA   NA
 2098824 2098825 BCG_0551 BCG_0552   hemA FALSE 0.227 50.000 0.012 NA   NA
 2098825 2098826 BCG_0552 BCG_0553 hemA hemC TRUE 0.987 10.000 0.178 0.002 Y NA
 2098826 2098827 BCG_0553 BCG_0554 hemC hemD TRUE 0.924 33.000 0.044 0.002 Y NA
 2098827 2098828 BCG_0554 BCG_0555 hemD hemB TRUE 0.944 86.000 0.429 0.002 Y NA
 2098828 2098829 BCG_0555 BCG_0556 hemB   TRUE 0.583 13.000 0.039 NA   NA
 2098829 2098830 BCG_0556 BCG_0557     TRUE 0.983 -3.000 0.389 NA   NA
 2098830 2098831 BCG_0557 BCG_0558     FALSE 0.105 103.000 0.000 NA   NA
 2098833 2098834 BCG_0560 BCG_0561     FALSE 0.275 132.000 0.333 1.000 N NA
 2098836 2098837 BCG_0563 BCG_0564     FALSE 0.490 -7.000 0.000 NA   NA
 2098837 2098838 BCG_0564 BCG_0565   gabP FALSE 0.054 135.000 0.000 NA   NA
 2098840 2098841 BCG_0567 BCG_0568 hemL   TRUE 0.927 0.000 0.204 NA N NA
 2098841 2098842 BCG_0568 BCG_0569     FALSE 0.311 15.000 0.035 NA N NA
 2098842 2098843 BCG_0569 BCG_0570   ccdA TRUE 0.997 -3.000 0.500 1.000 Y NA
 2098843 2098844 BCG_0570 BCG_0571 ccdA   TRUE 0.790 33.000 0.131 NA Y NA
 2098844 2098845 BCG_0571 BCG_0572   ccsA TRUE 0.991 -3.000 0.082 NA Y NA
 2098845 2098846 BCG_0572 BCG_0573 ccsA   FALSE 0.515 42.000 0.308 1.000 N NA
 2098846 2098847 BCG_0573 BCG_0574     FALSE 0.017 205.000 0.000 NA   NA
 2098847 2098848 BCG_0574 BCG_0575   PE_PGRS6a FALSE 0.042 147.000 0.000 NA   NA
 2098848 2098849 BCG_0575 BCG_0576 PE_PGRS6a PE_PGRS6b FALSE 0.221 -94.000 0.000 NA   NA
 2098850 2098851 BCG_0577c BCG_0578c fabH menA FALSE 0.137 82.000 0.011 1.000 N NA
 2098852 2098853 BCG_0579 BCG_0580 pnp galE3 TRUE 0.885 -3.000 0.008 1.000 N NA
 2098855 2098856 BCG_0582 BCG_0583     FALSE 0.269 57.000 0.048 NA   NA
 2098856 2098857 BCG_0583 BCG_0584     TRUE 0.953 -3.000 0.109 NA   NA
 2098858 2098859 BCG_0585c BCG_0586c   menE FALSE 0.552 12.000 0.008 NA   NA
 2098859 2098860 BCG_0586c BCG_0587c menE   FALSE 0.222 69.000 0.024 NA   NA
 2098860 2098861 BCG_0587c BCG_0588c     FALSE 0.138 60.000 0.000 NA   NA
 2098861 2098862 BCG_0588c BCG_0589c   pitA TRUE 0.876 -3.000 0.000 NA   NA
 2098862 2098863 BCG_0589c BCG_0590c pitA   FALSE 0.210 120.000 0.167 NA   NA
 2098863 2098864 BCG_0590c BCG_0591c     FALSE 0.283 63.000 0.069 NA   NA
 2098864 2098865 BCG_0591c BCG_0592c   menB FALSE 0.239 96.000 0.008 1.000   NA
 2098865 2098866 BCG_0592c BCG_0593c menB   FALSE 0.008 272.000 0.000 NA   NA
 2098866 2098867 BCG_0593c BCG_0594c     FALSE 0.252 -33.000 0.000 NA   NA
 2098867 2098868 BCG_0594c BCG_0595c     TRUE 0.876 -3.000 0.000 NA   NA
 2098868 2098869 BCG_0595c BCG_0596c   fadD8 FALSE 0.020 192.000 0.000 NA   NA
 2098870 2098871 BCG_0597 BCG_0598   menC TRUE 0.952 -3.000 0.028 1.000   NA
 2098871 2098872 BCG_0598 BCG_0599 menC bpoC TRUE 0.985 -3.000 0.038 0.050   NA
 2098872 2098873 BCG_0599 BCG_0600 bpoC menD FALSE 0.338 43.000 0.022 1.000   NA
 2098873 2098874 BCG_0600 BCG_0601 menD   TRUE 0.943 -3.000 0.055 NA   NA
 2098874 2098875 BCG_0601 BCG_0602   pimB FALSE 0.457 62.000 0.259 NA   NA
 2098875 2098876 BCG_0602 BCG_0603 pimB menH FALSE 0.356 17.000 0.013 1.000 N NA
 2098877 2098878 BCG_0604c BCG_0605c     FALSE 0.500 34.000 0.222 NA   NA
 2098878 2098879 BCG_0605c BCG_0606c     FALSE 0.301 25.000 0.029 1.000 N NA
 2098880 2098881 BCG_0607 BCG_0608 grcC1 htpX FALSE 0.160 101.000 0.042 1.000 N NA
 2098882 2098883 BCG_0609c BCG_0610c gpdA1   FALSE 0.276 61.000 0.133 1.000 N NA
 2098883 2098884 BCG_0610c BCG_0611c     FALSE 0.184 78.000 0.005 NA   NA
 5582075 2098886 BCG_t03 BCG_0612 tRNA-Tyr   FALSE 0.059 132.000 0.000 NA   NA
 2098886 2098887 BCG_0612 BCG_0613   cyp135B1 FALSE 0.049 110.000 0.000 1.000 N NA
 2098887 2098888 BCG_0613 BCG_0614 cyp135B1   FALSE 0.054 135.000 0.000 NA   NA
 2098888 2098889 BCG_0614 BCG_0615   nrdZ TRUE 0.629 26.000 0.286 NA   NA
 2098890 2098891 BCG_0616c BCG_0617c     FALSE 0.013 224.000 0.000 NA   NA
 2098891 2098892 BCG_0617c BCG_0618c     FALSE 0.003 468.000 0.000 NA   NA
 2098892 2098893 BCG_0618c BCG_0619c     FALSE 0.075 10.000 0.000 NA N NA
 2098893 2098894 BCG_0619c BCG_0620c     FALSE 0.001 216.000 0.000 NA N NA
 2098895 2098896 BCG_0621 BCG_0622   TB27.3 TRUE 0.619 14.000 0.080 NA   NA
 2098900 2098901 BCG_0626 BCG_0627     TRUE 0.964 -3.000 0.182 NA   NA
 2098905 2098906 BCG_0631 BCG_0632   yrbE2A TRUE 0.816 -3.000 0.019 NA N NA
 2098906 2098907 BCG_0632 BCG_0633 yrbE2A yrbE2B TRUE 0.990 2.000 0.333 NA Y NA
 2098907 2098908 BCG_0633 BCG_0634 yrbE2B mce2A TRUE 0.994 6.000 1.000 NA Y NA
 2098908 2098909 BCG_0634 BCG_0635 mce2A mce2B TRUE 0.999 -3.000 1.000 0.007 Y NA
 2098909 2098910 BCG_0635 BCG_0636 mce2B mce2C TRUE 0.999 -3.000 0.667 0.007 Y NA
 2098910 2098911 BCG_0636 BCG_0637 mce2C mce2Da TRUE 0.999 -3.000 0.667 0.007 Y NA
 2098911 2098912 BCG_0637 BCG_0639 mce2Da lprL TRUE 0.970 -25.000 0.333 0.007 Y NA
 2098912 2098913 BCG_0639 BCG_0640 lprL mce2F TRUE 0.996 5.000 0.500 0.007 Y NA
 2098914 2098915 BCG_0641c BCG_0642c     TRUE 0.876 -3.000 0.000 NA   NA
 2098915 2098916 BCG_0642c BCG_0643c     FALSE 0.023 183.000 0.000 NA   NA
 2098916 2098917 BCG_0643c BCG_0644c     FALSE 0.010 251.000 0.000 NA   NA
 2098917 2098918 BCG_0644c BCG_0645c     TRUE 0.984 -3.000 0.400 NA   NA
 2098918 2098919 BCG_0645c BCG_0646c     FALSE 0.103 104.000 0.000 NA   NA
 2098919 2098920 BCG_0646c BCG_0647c     FALSE 0.499 114.000 0.000 0.002   NA
 2098920 2098921 BCG_0647c BCG_0648c   tcrA FALSE 0.241 44.000 0.000 1.000   NA
 2098922 2098923 BCG_0649 BCG_0650   lpqO FALSE 0.130 72.000 0.000 NA   NA
 2098923 2098924 BCG_0650 BCG_0651 lpqO   FALSE 0.014 217.000 0.000 NA   NA
 2098924 2098925 BCG_0651 BCG_0652     TRUE 0.778 2.000 0.000 NA   NA
 2098925 2098926 BCG_0652 BCG_0653     FALSE 0.144 54.000 0.000 NA   NA
 2098926 2098927 BCG_0653 BCG_0654     FALSE 0.155 45.000 0.000 NA   NA
 2098927 2098928 BCG_0654 BCG_0655     TRUE 0.975 -3.000 0.273 NA   NA
 2098928 2098929 BCG_0655 BCG_0656     FALSE 0.237 -57.000 0.000 NA   NA
 2098930 2098931 BCG_0657c BCG_0658c     FALSE 0.145 52.000 0.000 NA   NA
 2098934 2098935 BCG_0661 BCG_0662     TRUE 0.876 -3.000 0.000 NA   NA
 2098937 2098938 BCG_0663A BCG_0664     TRUE 0.876 -3.000 0.000 NA   NA
 2098938 2098939 BCG_0664 BCG_0665   galT FALSE 0.063 129.000 0.000 NA   NA
 2098939 2098940 BCG_0665 BCG_0666 galT galK TRUE 0.995 -3.000 0.370 0.001 N NA
 2098940 2098941 BCG_0666 BCG_0667 galK   FALSE 0.003 395.000 0.000 NA   NA
 2098941 2098942 BCG_0667 BCG_0668     TRUE 0.870 11.000 0.333 NA   NA
 2098942 2098943 BCG_0668 BCG_0669     FALSE 0.117 93.000 0.000 NA   NA
 2098943 2098944 BCG_0669 BCG_0670     TRUE 0.954 0.000 0.200 NA   NA
 2098946 2098947 BCG_0672 BCG_0673     TRUE 0.995 -3.000 1.000 NA   NA
 2098948 2098949 BCG_0674c BCG_0675c   recD FALSE 0.117 93.000 0.000 NA   NA
 2098949 2098950 BCG_0675c BCG_0676c recD recBb TRUE 0.876 -3.000 0.000 NA   NA
 2098950 2098951 BCG_0676c BCG_0677c recBb recBa FALSE 0.214 -114.000 0.000 NA   NA
 2098951 2098952 BCG_0677c BCG_0678c recBa recC TRUE 0.999 0.000 0.542 0.001 Y NA
 2098952 2098953 BCG_0678c BCG_0679c recC echA3 FALSE 0.004 277.000 0.000 1.000 N NA
 2098953 2098954 BCG_0679c BCG_0680c echA3   FALSE 0.305 49.000 0.067 NA   NA
 2098954 2098955 BCG_0680c BCG_0681c     FALSE 0.057 154.000 0.006 NA   NA
 2098956 5582076 BCG_0682 BCG_t04   tRNA-Thr FALSE 0.062 130.000 0.000 NA   NA
 5582076 5582077 BCG_t04 BCG_t05 tRNA-Thr tRNA-Met FALSE 0.173 37.000 0.000 NA   NA
 5582077 2098959 BCG_t05 BCG_0683 tRNA-Met rpmG2 FALSE 0.175 36.000 0.000 NA   NA
 2098959 2098960 BCG_0683 BCG_0684 rpmG2   FALSE 0.313 51.000 0.079 NA   NA
 2098960 2098961 BCG_0684 BCG_0685     TRUE 0.927 -13.000 0.818 NA   NA
 2098961 2098962 BCG_0685 BCG_0686     TRUE 0.995 4.000 0.818 NA Y NA
 2098962 5582078 BCG_0686 BCG_t06   tRNA-Trp FALSE 0.018 199.000 0.000 NA   NA
 5582078 2098964 BCG_t06 BCG_0687 tRNA-Trp secE1 FALSE 0.047 141.000 0.000 NA   NA
 2098964 2098965 BCG_0687 BCG_0688 secE1 nusG FALSE 0.198 32.000 0.006 1.000 N NA
 2098965 2098966 BCG_0688 BCG_0689 nusG rplK TRUE 0.714 52.000 0.681 1.000 N NA
 2098966 2098967 BCG_0689 BCG_0690 rplK rplA TRUE 0.965 67.000 0.838 0.022 Y NA
 2098968 2098969 BCG_0691c BCG_0692c mmaA4 mmaA3 TRUE 0.926 65.000 0.286 0.004 Y NA
 2098969 2098970 BCG_0692c BCG_0693c mmaA3 mmaA2 TRUE 0.879 148.000 0.667 0.004 Y NA
 2098970 2098971 BCG_0693c BCG_0694c mmaA2 mmaA1 TRUE 0.755 167.000 0.400 0.004 Y NA
 2098971 2098972 BCG_0694c BCG_0695c mmaA1 lipG TRUE 0.637 47.000 0.444 NA   NA
 2098972 2098973 BCG_0695c BCG_0696c lipG   TRUE 0.792 12.000 0.243 NA   NA
 2098974 2098975 BCG_0697 BCG_0698   fabD2 TRUE 0.995 -3.000 0.857 1.000   NA
 2098975 2098976 BCG_0698 BCG_0699 fabD2   TRUE 0.898 0.000 0.000 1.000   NA
 2098976 2098977 BCG_0699 BCG_0700   rplJ FALSE 0.003 331.000 0.000 1.000 N NA
 2098977 2098978 BCG_0700 BCG_0701 rplJ rplL TRUE 0.977 37.000 0.884 0.017 Y NA
 2098980 2098981 BCG_0703 BCG_0704   mkl FALSE 0.391 12.000 0.038 NA N NA
 2098982 2098983 BCG_0705c BCG_0706c     FALSE 0.116 95.000 0.000 NA   NA
 2098983 2098984 BCG_0706c BCG_0707c     FALSE 0.128 76.000 0.000 NA   NA
 2098984 2098985 BCG_0707c BCG_0708c     FALSE 0.008 276.000 0.000 NA   NA
 2098985 2098986 BCG_0708c BCG_0709c     FALSE 0.511 -13.000 0.000 1.000   NA
 2098986 2098987 BCG_0709c BCG_0710c     FALSE 0.087 110.000 0.000 NA   NA
 2098987 2098988 BCG_0710c BCG_0711c     TRUE 0.876 -3.000 0.000 NA   NA
 2098989 2098990 BCG_0712 BCG_0713 atsD   FALSE 0.188 32.000 0.000 NA   NA
 2098990 2098991 BCG_0713 BCG_0714     TRUE 0.876 -3.000 0.000 NA   NA
 2098991 2098992 BCG_0714 BCG_0715     TRUE 0.876 -3.000 0.000 NA   NA
 2098992 2098993 BCG_0715 BCG_0716   rpoB FALSE 0.003 498.000 0.000 NA   NA
 2098993 2098994 BCG_0716 BCG_0717 rpoB rpoC TRUE 0.980 45.000 0.851 0.001 Y NA
 2098996 2098997 BCG_0719 BCG_0720 end lpqP FALSE 0.190 32.000 0.004 1.000 N NA
 2098997 2098998 BCG_0720 BCG_0721 lpqP fadE8 FALSE 0.239 60.000 0.071 1.000 N NA
 2098998 2098999 BCG_0721 BCG_0722 fadE8 echA4 TRUE 0.966 11.000 0.286 1.000 Y NA
 2098999 2099000 BCG_0722 BCG_0723 echA4   TRUE 0.924 3.000 0.292 NA N NA
 2099000 2099001 BCG_0723 BCG_0724   echA5 TRUE 0.903 -3.000 0.083 NA N NA
 2099002 2099003 BCG_0725c BCG_0726c mmpL5 mmpS5 TRUE 0.995 -3.000 1.000 NA   NA
 2099005 2099006 BCG_0728c BCG_0729c     TRUE 0.985 2.000 0.778 NA   NA
 2099007 2099008 BCG_0730 BCG_0731   rpsL FALSE 0.005 249.000 0.000 1.000 N NA
 2099008 2099009 BCG_0731 BCG_0732 rpsL rpsG TRUE 0.999 0.000 0.620 0.003 Y NA
 2099009 2099010 BCG_0732 BCG_0733 rpsG fusA1 TRUE 0.886 81.000 0.579 1.000 Y NA
 2099010 2099011 BCG_0733 BCG_0734 fusA1 tuf TRUE 0.615 231.000 0.400 0.001 Y NA
 2099011 2099012 BCG_0734 BCG_0735 tuf   FALSE 0.050 138.000 0.000 NA   NA
 2099012 2099013 BCG_0735 BCG_0736     FALSE 0.217 153.000 0.333 NA   NA
 2099013 2099014 BCG_0736 BCG_0737     TRUE 0.896 14.000 0.214 0.056   NA
 2099015 2099016 BCG_0738c BCG_0739c     FALSE 0.002 613.000 0.000 NA   NA
 2099016 2099017 BCG_0739c BCG_0740c     TRUE 0.951 -3.000 0.088 NA   NA
 2099018 2099019 BCG_0741 BCG_0742   pqqE TRUE 0.987 -3.000 0.484 NA   NA
 2099019 2099020 BCG_0742 BCG_0743 pqqE lldD1 TRUE 0.978 3.000 0.548 1.000   NA
 2099020 2099021 BCG_0743 BCG_0744 lldD1   FALSE 0.205 190.000 0.464 1.000   NA
 2099021 2099022 BCG_0744 BCG_0745     TRUE 0.627 49.000 0.440 NA   NA
 2099022 2099023 BCG_0745 BCG_0746     TRUE 0.982 2.000 0.667 NA   NA
 2099023 2099024 BCG_0746 BCG_0747     FALSE 0.003 461.000 0.000 NA   NA
 2099024 2099025 BCG_0747 BCG_0748     FALSE 0.151 48.000 0.000 NA   NA
 2099025 2099026 BCG_0748 BCG_0749     FALSE 0.022 185.000 0.000 NA   NA
 2099026 2099027 BCG_0749 BCG_0750   rpsJ FALSE 0.002 637.000 0.000 NA   NA
 2099027 2099028 BCG_0750 BCG_0751 rpsJ rplC TRUE 0.979 17.000 0.467 0.022 Y NA
 2099028 2099029 BCG_0751 BCG_0752 rplC rplD TRUE 0.998 0.000 0.361 0.017 Y NA
 2099029 2099030 BCG_0752 BCG_0753 rplD rplW TRUE 0.998 0.000 0.513 0.017 Y NA
 2099030 2099031 BCG_0753 BCG_0754 rplW rplB TRUE 0.896 147.000 0.849 0.014 Y NA
 2099031 2099032 BCG_0754 BCG_0755 rplB rpsS TRUE 0.972 41.000 0.820 0.022 Y NA
 2099032 2099033 BCG_0755 BCG_0756 rpsS rplV TRUE 0.999 -3.000 0.769 0.022 Y NA
 2099033 2099034 BCG_0756 BCG_0757 rplV rpsC TRUE 0.999 0.000 0.719 0.022 Y NA
 2099034 2099035 BCG_0757 BCG_0758 rpsC rplP TRUE 0.998 4.000 0.828 0.022 Y NA
 2099035 2099036 BCG_0758 BCG_0759 rplP rpmC TRUE 0.999 0.000 0.802 0.017 Y NA
 2099036 2099037 BCG_0759 BCG_0760 rpmC rpsQ TRUE 0.999 -3.000 0.828 0.017 Y NA
 2099037 2099038 BCG_0760 BCG_0761 rpsQ atsA FALSE 0.029 169.000 0.005 1.000 N NA
 2099038 2099039 BCG_0761 BCG_0762 atsA   FALSE 0.478 48.000 0.250 NA   NA
 2099039 2099040 BCG_0762 BCG_0763     FALSE 0.076 301.000 0.600 NA   NA
 2099040 2099041 BCG_0763 BCG_0764   rplN FALSE 0.003 487.000 0.000 NA   NA
 2099041 2099042 BCG_0764 BCG_0765 rplN rplX TRUE 0.999 1.000 0.810 0.022 Y NA
 2099042 2099043 BCG_0765 BCG_0766 rplX rplE TRUE 0.999 0.000 0.758 0.017 Y NA
 2099043 2099044 BCG_0766 BCG_0767 rplE rpsN1 TRUE 0.996 5.000 0.496 0.017 Y NA
 2099044 2099045 BCG_0767 BCG_0768 rpsN1 rpsH TRUE 0.759 164.000 0.473 0.017 Y NA
 2099045 2099046 BCG_0768 BCG_0769 rpsH rplF TRUE 0.983 24.000 0.808 0.017 Y NA
 2099046 2099047 BCG_0769 BCG_0770 rplF rplR TRUE 0.998 3.000 0.815 0.017 Y NA
 2099047 2099048 BCG_0770 BCG_0771 rplR rpsE TRUE 0.986 20.000 0.814 0.022 Y NA
 2099048 2099049 BCG_0771 BCG_0772 rpsE rpmD TRUE 0.998 3.000 0.789 0.022 Y NA
 2099049 2099050 BCG_0772 BCG_0773 rpmD rplO TRUE 0.999 0.000 0.653 0.002 Y NA
 2099050 2099051 BCG_0773 BCG_0774 rplO sppA FALSE 0.109 33.000 0.000 1.000 N NA
 2099052 2099053 BCG_0775c BCG_0776c     TRUE 0.582 93.000 0.000 NA Y NA
 2099053 2099054 BCG_0776c BCG_0777c   fucA FALSE 0.001 203.000 0.000 NA N NA
 2099054 2099055 BCG_0777c BCG_0778c fucA serA2 TRUE 0.927 -3.000 0.058 1.000 N NA
 2099056 2099057 BCG_0779 BCG_0780 xylB   TRUE 0.637 13.000 0.018 1.000   NA
 2099059 2099060 BCG_0782 BCG_0783 secY adk TRUE 0.926 -3.000 0.057 1.000 N NA
 2099060 2099061 BCG_0783 BCG_0784 adk mapA TRUE 0.974 3.000 0.606 1.000 N NA
 2099061 2099062 BCG_0784 BCG_0785 mapA sigL FALSE 0.245 73.000 0.099 1.000 N NA
 2099062 2099063 BCG_0785 BCG_0786 sigL   TRUE 0.901 64.000 0.697 NA Y NA
 2099063 2099064 BCG_0786 BCG_0787     FALSE 0.075 315.000 0.065 NA Y NA
 2099064 2099065 BCG_0787 BCG_0788     FALSE 0.004 358.000 0.000 NA   NA
 2099065 2099066 BCG_0788 BCG_0789     FALSE 0.017 205.000 0.000 NA   NA
 2099066 2099067 BCG_0789 BCG_0790     FALSE 0.079 115.000 0.000 NA   NA
 2099067 2099068 BCG_0790 BCG_0791     FALSE 0.012 231.000 0.000 NA   NA
 2099068 2099069 BCG_0791 BCG_0792   PE_PGRS8 FALSE 0.046 142.000 0.000 NA   NA
 2099070 2099071 BCG_0793c BCG_0794c     TRUE 0.876 -3.000 0.000 NA   NA
 2099072 2099073 BCG_0795 BCG_0796   PE_PGRS9 FALSE 0.280 20.000 0.000 NA   NA
 2099073 2099074 BCG_0796 BCG_0797 PE_PGRS9 PE_PGRS10 FALSE 0.003 399.000 0.000 NA   NA
 2099074 2099075 BCG_0797 BCG_0798 PE_PGRS10   FALSE 0.186 91.000 0.000 1.000   NA
 2099075 2099076 BCG_0798 BCG_0799     FALSE 0.243 24.000 0.000 NA   NA
 2099079 2099080 BCG_0802c BCG_0803c mmsB fadE9 TRUE 0.942 11.000 0.051 1.000 Y NA
 2099080 2099081 BCG_0803c BCG_0804c fadE9 mmsA TRUE 0.838 7.000 0.197 1.000 N NA
 2099083 2099084 BCG_0806c BCG_0807c PPE12   FALSE 0.006 302.000 0.000 NA   NA
 2099084 5582079 BCG_0807c BCG_t07   tRNA-Thr FALSE 0.079 115.000 0.000 NA   NA
 5582079 2099086 BCG_t07 BCG_0808c tRNA-Thr   FALSE 0.207 28.000 0.000 NA   NA
 2099087 2099088 BCG_0809 BCG_0810 phoP phoR TRUE 0.968 45.000 0.824 0.049 Y NA
 2099089 2099090 BCG_0811c BCG_0812c     FALSE 0.202 109.000 0.014 1.000   NA
 2099090 2099091 BCG_0812c BCG_0813c   adhB TRUE 0.936 13.000 0.750 1.000   NA
 2099091 2099092 BCG_0813c BCG_0814c adhB   FALSE 0.520 99.000 0.400 NA   NA
 2099092 2099093 BCG_0814c BCG_0815c     TRUE 0.984 3.000 0.800 NA   NA
 2099093 2099094 BCG_0815c BCG_0816c   cyp51 TRUE 0.976 3.000 0.733 NA N NA
 2099094 2099095 BCG_0816c BCG_0817c cyp51   TRUE 0.966 0.000 0.212 1.000   NA
 2099095 2099096 BCG_0817c BCG_0818c   cyp123 TRUE 0.572 -418.000 0.231 1.000   NA
 2099096 2099097 BCG_0818c BCG_0819c cyp123   TRUE 0.988 -3.000 0.571 1.000 N NA
 2099098 2099099 BCG_0820 BCG_0821 aldA   TRUE 0.814 31.000 0.812 1.000 N NA
 2099099 2099100 BCG_0821 BCG_0822     TRUE 0.853 98.000 0.480 1.000 Y NA
 2099100 2099101 BCG_0822 BCG_0823     TRUE 0.991 -3.000 0.560 1.000   NA
 2099101 2099102 BCG_0823 BCG_0824   purD TRUE 0.636 12.000 0.003 1.000   NA
 2099103 2099104 BCG_0825c BCG_0826c ggtA   FALSE 0.379 51.000 0.073 1.000   NA
 2099107 2099108 BCG_0829 BCG_0830 purB cyp126 TRUE 0.697 5.000 0.006 1.000 N NA
 2099110 2099111 BCG_0832 BCG_0833 purC ptrB TRUE 0.913 -3.000 0.035 1.000 N NA
 2099113 2099114 BCG_0835 BCG_0836     TRUE 0.617 16.000 0.048 1.000   NA
 2099114 2099115 BCG_0836 BCG_0837     TRUE 0.786 18.000 0.024 0.056   NA
 2099117 2099118 BCG_0839 BCG_0840     FALSE 0.098 106.000 0.000 NA   NA
 2099118 2099119 BCG_0840 BCG_0841   purQ TRUE 0.999 -3.000 0.656 0.001 Y NA
 2099120 2099121 BCG_0842c BCG_0843c     FALSE 0.261 22.000 0.000 NA   NA
 2099121 2099122 BCG_0843c BCG_0844c     TRUE 0.948 -3.000 0.070 NA   NA
 2099122 2099123 BCG_0844c BCG_0845c     TRUE 0.958 -3.000 0.250 NA N NA
 2099125 2099126 BCG_0847c BCG_0848c     TRUE 0.812 -12.000 0.000 0.067   NA
 2099128 2099129 BCG_0850c BCG_0851c cfp29   TRUE 0.975 -3.000 0.267 NA   NA
 2099130 2099131 BCG_0852 BCG_0853 pepC   TRUE 0.616 12.000 0.038 NA   NA
 2099133 2099134 BCG_0855 BCG_0856 purL   TRUE 0.924 -3.000 0.000 1.000   NA
 2099134 2099135 BCG_0856 BCG_0857     FALSE 0.114 121.000 0.000 1.000   NA
 2099137 2099138 BCG_0859 BCG_0860   purF FALSE 0.216 87.000 0.034 NA   NA
 2099138 2099139 BCG_0860 BCG_0861 purF purM TRUE 0.864 31.000 0.248 1.000 Y NA
 2099140 2099141 BCG_0862c BCG_0863c     FALSE 0.073 147.000 0.017 NA   NA
 2099143 2099144 BCG_0865c BCG_0866c   sseC2 FALSE 0.063 163.000 0.043 NA   NA
 2099144 2099145 BCG_0866c BCG_0867c sseC2 cysA2 TRUE 0.982 2.000 0.557 1.000   NA
 2099145 2099146 BCG_0867c BCG_0868c cysA2 thiX FALSE 0.011 293.000 0.000 1.000   NA
 2099146 2099147 BCG_0868c BCG_0869c thiX   TRUE 0.983 -3.000 0.371 NA   NA
 2099148 2099149 BCG_0870 BCG_0871     TRUE 0.973 -3.000 0.196 1.000   NA
 2099149 2099150 BCG_0871 BCG_0872   phoTa FALSE 0.330 43.000 0.016 1.000   NA
 2099150 2099151 BCG_0872 BCG_0873 phoTa phoTb FALSE 0.232 -60.000 0.000 NA   NA
 2099152 2099153 BCG_0874c BCG_0875c phoY2   TRUE 0.609 58.000 0.579 NA N NA
 2099153 2099154 BCG_0875c BCG_0876c     FALSE 0.012 166.000 0.005 NA N NA
 2099154 2099155 BCG_0876c BCG_0877c   desA1 FALSE 0.237 88.000 0.004 1.000   NA
 2099155 2099156 BCG_0877c BCG_0878c desA1   FALSE 0.242 162.000 0.375 1.000   NA
 2099158 2099159 BCG_0880c BCG_0881c     FALSE 0.081 58.000 0.000 1.000 N NA
 2099160 2099161 BCG_0882 BCG_0883     FALSE 0.100 105.000 0.000 NA   NA
 2099162 5582080 BCG_0884c BCG_t08   tRNA-Lys FALSE 0.116 94.000 0.000 NA   NA
 5582081 5582082 BCG_t09 BCG_t10 tRNA-Glu tRNA-Asp FALSE 0.170 38.000 0.000 NA   NA
 5582082 5582083 BCG_t10 BCG_t11 tRNA-Asp tRNA-Phe FALSE 0.198 30.000 0.000 NA   NA
 5582083 2099167 BCG_t11 BCG_0885 tRNA-Phe PE_PGRS13 FALSE 0.002 665.000 0.000 NA   NA
 2099170 2099171 BCG_0888c BCG_0889c     FALSE 0.130 71.000 0.000 NA   NA
 2099172 2099173 BCG_0890 BCG_0891 lpqR   FALSE 0.165 87.000 0.033 1.000 N NA
 2099175 2099176 BCG_0893 BCG_0894     FALSE 0.007 277.000 0.000 NA   NA
 2099176 2099177 BCG_0894 BCG_0895     FALSE 0.478 -16.000 0.000 1.000   NA
 2099181 2099182 BCG_0899 BCG_0900 lpqS cysK2 FALSE 0.017 203.000 0.000 NA   NA
 2099182 2099183 BCG_0900 BCG_0901 cysK2   TRUE 0.986 0.000 0.500 1.000   NA
 2099183 2099184 BCG_0901 BCG_0902     TRUE 0.876 -3.000 0.000 NA   NA
 2099188 2099189 BCG_0906 BCG_0907   far TRUE 0.929 6.000 0.333 NA   NA
 2099189 2099190 BCG_0907 BCG_0908 far   FALSE 0.081 113.000 0.000 NA   NA
 2099190 2099191 BCG_0908 BCG_0909     FALSE 0.207 28.000 0.000 NA   NA
 2099193 2099194 BCG_0911 BCG_0912 fadA fadB TRUE 0.994 5.000 0.750 1.000 Y NA
 2099195 2099196 BCG_0913c BCG_0914c     FALSE 0.182 138.000 0.206 NA   NA
 2099197 2099198 BCG_0915 BCG_0916   moaC2 FALSE 0.186 84.000 0.012 NA   NA
 2099198 2099199 BCG_0916 BCG_0917 moaC2 mog TRUE 0.997 -3.000 0.016 0.005 Y NA
 2099199 2099200 BCG_0917 BCG_0918 mog moaE2 TRUE 0.997 -3.000 0.015 0.005 Y NA
 2099201 2099202 BCG_0919c BCG_0920c rpfA moaD2 FALSE 0.005 448.000 0.000 1.000   NA
 2099202 2099203 BCG_0920c BCG_0921c moaD2 moaA2 TRUE 0.990 4.000 0.410 1.000 Y NA
 2099203 2099204 BCG_0921c BCG_0922c moaA2   TRUE 0.932 -3.000 0.026 NA   NA
 2099208 2099209 BCG_0926c BCG_0927c     FALSE 0.110 100.000 0.000 NA   NA
 2099209 2099210 BCG_0927c BCG_0928c     TRUE 0.985 -3.000 0.432 NA   NA
 2099212 2099213 BCG_0930c BCG_0931c PPE13   FALSE 0.007 278.000 0.000 NA   NA
 2099214 2099215 BCG_0932 BCG_0933     TRUE 0.910 -3.000 0.029 1.000 N NA
 2099215 2099216 BCG_0933 BCG_0934     TRUE 0.949 -3.000 0.075 NA   NA
 2099217 2099218 BCG_0935c BCG_0936c   serC FALSE 0.135 157.000 0.214 NA   NA
 2099219 2099220 BCG_0937 BCG_0938   fprB TRUE 0.914 19.000 0.846 1.000   NA
 2099223 2099224 BCG_0941c BCG_0942c citA   FALSE 0.187 87.000 0.000 1.000   NA
 2099224 2099225 BCG_0942c BCG_0943c     TRUE 0.857 2.000 0.000 1.000   NA
 2099228 2099229 BCG_0946 BCG_0947     FALSE 0.128 77.000 0.000 NA   NA
 2099229 2099230 BCG_0947 BCG_0948   gltA2 FALSE 0.021 190.000 0.000 NA   NA
 2099231 2099232 BCG_0949c BCG_0950c     FALSE 0.440 26.000 0.091 NA   NA
 2099233 2099234 BCG_0951 BCG_0952 ompA   TRUE 0.798 13.000 0.286 NA   NA
 2099234 2099235 BCG_0952 BCG_0953     TRUE 0.988 0.000 0.667 NA   NA
 2099236 2099237 BCG_0954c BCG_0955c prrB prrA TRUE 0.970 11.000 0.333 1.000 Y NA
 2099237 2099238 BCG_0955c BCG_0956c prrA accD3 FALSE 0.034 131.000 0.000 1.000 N NA
 2099239 2099240 BCG_0957 BCG_0958 echA6   TRUE 0.924 6.000 0.314 NA   NA
 2099240 2099241 BCG_0958 BCG_0959     FALSE 0.322 93.000 0.171 NA   NA
 2099241 2099242 BCG_0959 BCG_0960   ctpE TRUE 0.943 -3.000 0.119 1.000 N NA
 2099242 2099243 BCG_0960 BCG_0961 ctpE   FALSE 0.002 557.000 0.000 NA   NA
 2099243 2099244 BCG_0961 BCG_0962     TRUE 0.873 6.000 0.182 NA   NA
 2099244 2099245 BCG_0962 BCG_0963     FALSE 0.113 98.000 0.000 NA   NA
 2099245 2099246 BCG_0963 BCG_0964     FALSE 0.283 65.000 0.071 NA   NA
 2099247 2099248 BCG_0965c BCG_0966c     TRUE 0.956 2.000 0.417 NA N NA
 2099248 2099249 BCG_0966c BCG_0967c   PPE14 FALSE 0.009 93.000 0.000 NA N NA
 2099249 2099250 BCG_0967c BCG_0968c PPE14 PE7 FALSE 0.359 15.000 0.000 NA   NA
 2099251 2099252 BCG_0969 BCG_0970 betP   FALSE 0.008 343.000 0.000 1.000   NA
 2099252 2099253 BCG_0970 BCG_0971     TRUE 0.964 -3.000 0.091 1.000   NA
 5582084 2099255 BCG_t12 BCG_0972c tRNA-Arg   FALSE 0.103 104.000 0.000 NA   NA
 2099256 2099257 BCG_0973 BCG_0974     TRUE 0.982 0.000 0.000 NA Y NA
 2099258 2099259 BCG_0975c BCG_0976c   mntH TRUE 0.886 1.000 0.029 NA   NA
 2099259 2099260 BCG_0976c BCG_0977c mntH   FALSE 0.287 32.000 0.014 NA   NA
 2099260 2099261 BCG_0977c BCG_0978c     FALSE 0.210 77.000 0.018 NA   NA
 2099261 2099262 BCG_0978c BCG_0979c     TRUE 0.694 54.000 0.500 1.000   NA
 2099263 2099264 BCG_0980 BCG_0981 pstS3 pstC2 TRUE 0.977 13.000 0.200 0.004 Y NA
 2099264 2099265 BCG_0981 BCG_0982 pstC2 pstA1 TRUE 0.997 -3.000 0.037 0.004 Y NA
 2099266 2099267 BCG_0983c BCG_0984c pknDb pknDa TRUE 0.904 11.000 0.000 0.004   NA
 2099267 2099268 BCG_0984c BCG_0985c pknDa pstS2 TRUE 0.832 22.000 0.667 1.000 N NA
 2099269 2099270 BCG_0986 BCG_0987 pstBa pstBb FALSE 0.276 -25.000 0.000 NA   NA
 2099270 2099271 BCG_0987 BCG_0988 pstBb pstS1 TRUE 0.933 21.000 0.000 0.004 Y NA
 2099271 2099272 BCG_0988 BCG_0989 pstS1 pstC1 TRUE 0.976 60.000 1.000 0.004 Y NA
 2099272 2099273 BCG_0989 BCG_0990 pstC1 pstA2 TRUE 0.998 2.000 0.636 0.004 Y NA
 2099275 2099276 BCG_0992 BCG_0993     TRUE 0.918 -3.000 0.043 1.000 N NA
 2099277 2099278 BCG_0994c BCG_0995c     FALSE 0.337 85.000 0.182 NA   NA
 2099281 2099282 BCG_0998 BCG_0999     TRUE 0.871 6.000 0.082 1.000   NA
 2099283 2099284 BCG_1000c BCG_1001c pgi   FALSE 0.002 615.000 0.000 NA   NA
 2099284 2099285 BCG_1001c BCG_1002c     FALSE 0.077 116.000 0.000 NA   NA
 2099288 2099289 BCG_1005 BCG_1006 sucC sucD TRUE 0.988 13.000 0.382 0.001 Y NA
 2099291 2099292 BCG_1008 BCG_1009     FALSE 0.466 40.000 0.218 NA   NA
 2099292 2099293 BCG_1009 BCG_1010   purN FALSE 0.153 116.000 0.044 NA   NA
 2099293 2099294 BCG_1010 BCG_1011 purN purH TRUE 0.994 -3.000 0.225 1.000 Y NA
 2099294 2099295 BCG_1011 BCG_1012 purH   FALSE 0.093 107.000 0.002 1.000 N NA
 2099295 2099296 BCG_1012 BCG_1013     TRUE 0.945 -7.000 0.645 1.000   NA
 2099296 2099297 BCG_1013 BCG_1013A     FALSE 0.223 54.000 0.000 1.000   NA
 2099297 2099298 BCG_1013A BCG_1014     TRUE 0.876 -3.000 0.000 NA   NA
 2099298 2099299 BCG_1014 BCG_1015     FALSE 0.043 146.000 0.000 NA   NA
 2099300 2099301 BCG_1016c BCG_1017c lprP   FALSE 0.023 183.000 0.000 NA   NA
 2099301 2099302 BCG_1017c BCG_1018c     FALSE 0.112 99.000 0.000 NA   NA
 2099302 2099303 BCG_1018c BCG_1019c     FALSE 0.110 100.000 0.000 NA   NA
 2099303 2099304 BCG_1019c BCG_1020c     FALSE 0.175 36.000 0.000 NA   NA
 2099305 2099306 BCG_1021 BCG_1022     FALSE 0.219 57.000 0.012 NA   NA
 2099306 2099307 BCG_1022 BCG_1023   ctpV TRUE 0.652 56.000 0.500 NA   NA
 2099307 2099308 BCG_1023 BCG_1024 ctpV   TRUE 0.991 -3.000 0.667 NA   NA
 2099309 2099310 BCG_1025c BCG_1026c echA7 fadE12 TRUE 0.992 0.000 0.203 1.000 Y NA
 2099310 2099311 BCG_1026c BCG_1027c fadE12 accA2 TRUE 0.998 -3.000 0.812 1.000 Y NA
 2099311 2099312 BCG_1027c BCG_1028c accA2 accD2 TRUE 0.998 6.000 0.875 0.003 Y NA
 2099312 2099313 BCG_1028c BCG_1029c accD2 fadE13 TRUE 0.994 3.000 0.548 1.000 Y NA
 2099313 2099314 BCG_1029c BCG_1030c fadE13   TRUE 0.989 -3.000 0.562 NA   NA
 2099316 2099317 BCG_1032c BCG_1033c PE_PGRS17   FALSE 0.005 314.000 0.000 NA   NA
 2099320 2099321 BCG_1036 BCG_1037 mprA mprB TRUE 0.999 0.000 0.655 0.008 Y NA
 2099321 2099322 BCG_1037 BCG_1038 mprB   TRUE 0.595 44.000 0.424 1.000 N NA
 2099322 2099323 BCG_1038 BCG_1039   moaB2 TRUE 0.976 0.000 0.423 1.000 N NA
 2099325 2099326 BCG_1041 BCG_1042     TRUE 0.958 -7.000 0.210 1.000 Y NA
 2099326 2099327 BCG_1042 BCG_1043     TRUE 0.875 7.000 0.152 1.000   NA
 2099328 2099329 BCG_1044c BCG_1045c grcC2   FALSE 0.137 61.000 0.000 NA   NA
 2099329 2099330 BCG_1045c BCG_1046c     FALSE 0.216 73.000 0.022 NA   NA
 2099330 2099331 BCG_1046c BCG_1047c     FALSE 0.240 74.000 0.041 NA   NA
 2099332 2099333 BCG_1048 BCG_1049 galU moeA1 FALSE 0.320 77.000 0.196 1.000 N NA
 2099333 2099334 BCG_1049 BCG_1050 moeA1 rimJ FALSE 0.551 63.000 0.427 1.000 N NA
 2099334 2099335 BCG_1050 BCG_1051 rimJ   FALSE 0.112 161.000 0.183 NA   NA
 2099335 5582085 BCG_1051 BCG_t13   tRNA-Ala FALSE 0.146 51.000 0.000 NA   NA
 5582085 2099337 BCG_t13 BCG_1052 tRNA-Ala   FALSE 0.146 51.000 0.000 NA   NA
 2099337 2099338 BCG_1052 BCG_1053     TRUE 0.876 -3.000 0.000 NA   NA
 2099338 2099339 BCG_1053 BCG_1054     FALSE 0.024 181.000 0.000 NA   NA
 2099339 2099340 BCG_1054 BCG_1055     FALSE 0.243 24.000 0.000 NA   NA
 2099340 2099341 BCG_1055 BCG_1056     FALSE 0.298 18.000 0.000 NA   NA
 2099346 2099347 BCG_1061c BCG_1062c   pabB FALSE 0.189 74.000 0.006 NA   NA
 2099350 2099351 BCG_1065 BCG_1066 tatD rpfB FALSE 0.026 208.000 0.008 NA   NA
 2099351 2099352 BCG_1066 BCG_1067 rpfB ksgA FALSE 0.469 -27.000 0.008 1.000   NA
 2099352 2099353 BCG_1067 BCG_1068 ksgA ispE FALSE 0.205 86.000 0.068 1.000 N NA
 2099353 2099354 BCG_1068 BCG_1069 ispE   TRUE 0.876 -3.000 0.000 NA   NA
 2099354 2099355 BCG_1069 BCG_1070   pks16 FALSE 0.017 204.000 0.000 NA   NA
 2099356 2099357 BCG_1071c BCG_1072c pth rplY TRUE 0.985 13.000 0.496 0.025 Y NA
 2099357 2099358 BCG_1072c BCG_1073c rplY lpqT FALSE 0.056 134.000 0.000 NA   NA
 2099358 2099359 BCG_1073c BCG_1074c lpqT prsA FALSE 0.175 36.000 0.000 NA   NA
 2099359 2099360 BCG_1074c BCG_1075c prsA glmU FALSE 0.155 92.000 0.026 1.000 N NA
 2099360 5582086 BCG_1075c BCG_t14 glmU tRNA-Gln FALSE 0.340 16.000 0.000 NA   NA
 2099362 2099363 BCG_1076 BCG_1077   mfd TRUE 0.841 59.000 0.013 0.051 Y NA
 2099363 2099364 BCG_1077 BCG_1078 mfd   TRUE 0.935 0.000 0.026 1.000   NA
 2099364 2099365 BCG_1078 BCG_1079   lpqU FALSE 0.118 88.000 0.000 NA   NA
 2099365 2099366 BCG_1079 BCG_1080 lpqU eno FALSE 0.063 97.000 0.012 NA N NA
 2099366 2099367 BCG_1080 BCG_1081 eno   TRUE 0.778 5.000 0.043 1.000 N NA
 2099367 2099368 BCG_1081 BCG_1082     TRUE 0.710 17.000 0.252 NA   NA
 2099368 2099369 BCG_1082 BCG_1083     TRUE 0.797 -9.000 0.243 NA   NA
 2099370 2099371 BCG_1084c BCG_1085c kdpE kdpD TRUE 0.997 -3.000 0.429 1.000 Y NA
 2099372 2099373 BCG_1086 BCG_1087 kdpF kdpA TRUE 0.991 0.000 0.152 0.001   NA
 2099373 2099374 BCG_1087 BCG_1088 kdpA kdpB TRUE 0.998 -3.000 0.124 0.001 Y NA
 2099374 2099375 BCG_1088 BCG_1089 kdpB kdpC TRUE 0.996 0.000 0.015 0.001 Y NA
 2099376 2099377 BCG_1090c BCG_1091c trcS trcR TRUE 0.994 8.000 0.556 0.047 Y NA
 2099377 2099378 BCG_1091c BCG_1092c trcR   FALSE 0.002 182.000 0.000 NA N NA
 2099378 2099379 BCG_1092c BCG_1093c     FALSE 0.131 68.000 0.000 NA   NA
 2099379 2099380 BCG_1093c BCG_1094c     FALSE 0.181 34.000 0.000 NA   NA
 2099380 2099381 BCG_1094c BCG_1095c   esxI FALSE 0.084 111.000 0.000 NA   NA
 2099381 2099382 BCG_1095c BCG_1096c esxI esxJ FALSE 0.213 27.000 0.000 NA   NA
 2099382 2099383 BCG_1096c BCG_1097c esxJ PPE15 FALSE 0.043 146.000 0.000 NA   NA
 2099383 2099384 BCG_1097c BCG_1098c PPE15 PE8 TRUE 0.701 77.000 0.667 NA   NA
 2099384 2099385 BCG_1098c BCG_1099c PE8   FALSE 0.002 1196.000 0.000 NA   NA
 2099385 2099386 BCG_1099c BCG_1100c     FALSE 0.257 -31.000 0.000 NA   NA
 2099386 2099387 BCG_1100c BCG_1101c     FALSE 0.007 283.000 0.000 NA   NA
 2099388 2099389 BCG_1102 BCG_1103     TRUE 0.876 -3.000 0.000 NA   NA
 2099393 2099394 BCG_1107 BCG_1108     FALSE 0.233 48.000 0.000 1.000   NA
 2099398 2099399 BCG_1112 BCG_1113     TRUE 0.876 -3.000 0.000 NA   NA
 2099399 5582087 BCG_1113 BCG_t15   tRNA-Leu FALSE 0.251 23.000 0.000 NA   NA
 5582087 2099401 BCG_t15 BCG_1114 tRNA-Leu   FALSE 0.033 159.000 0.000 NA   NA
 2099401 2099402 BCG_1114 BCG_1115     FALSE 0.002 1004.000 0.000 NA   NA
 2099402 2099403 BCG_1115 BCG_1116   fadD14 FALSE 0.242 107.000 0.125 NA   NA
 2099403 2099404 BCG_1116 BCG_1117 fadD14   FALSE 0.522 76.000 0.286 1.000   NA
 2099404 2099405 BCG_1117 BCG_1118     FALSE 0.501 53.000 0.286 NA   NA
 2099405 2099406 BCG_1118 BCG_1119     TRUE 0.610 34.000 0.333 NA   NA
 2099406 2099407 BCG_1119 BCG_1120     TRUE 0.935 5.000 0.250 1.000   NA
 2099408 2099409 BCG_1121c BCG_1122c   lpqV FALSE 0.200 81.000 0.016 NA   NA
 2099410 2099411 BCG_1123 BCG_1124     TRUE 0.985 -3.000 0.429 NA   NA
 2099412 2099413 BCG_1125c BCG_1126c PE_PGRS19 PE_PGRS20 FALSE 0.005 333.000 0.000 NA   NA
 2099413 2099414 BCG_1126c BCG_1127c PE_PGRS20   FALSE 0.004 362.000 0.000 NA   NA
 2099414 2099415 BCG_1127c BCG_1128c   echA8 TRUE 0.975 -3.000 0.259 NA   NA
 2099415 2099416 BCG_1128c BCG_1129c echA8 echA9 TRUE 0.976 12.000 0.128 0.007 Y NA
 2099417 2099418 BCG_1130 BCG_1131     FALSE 0.077 116.000 0.000 NA   NA
 2099419 2099420 BCG_1132c BCG_1133c fadA3   FALSE 0.084 53.000 0.000 1.000 N NA
 2099421 2099422 BCG_1134 BCG_1135 lipU cbs FALSE 0.172 57.000 0.017 1.000 N NA
 2099422 2099423 BCG_1135 BCG_1136 cbs pra FALSE 0.035 202.000 0.034 NA   NA
 2099423 2099424 BCG_1136 BCG_1137 pra metB FALSE 0.311 32.000 0.028 NA   NA
 2099425 2099426 BCG_1138c BCG_1139c greA   FALSE 0.103 186.000 0.250 NA   NA
 2099427 2099428 BCG_1140 BCG_1141 mca   TRUE 0.952 -3.000 0.099 NA   NA
 2099428 2099429 BCG_1141 BCG_1142     FALSE 0.505 -13.000 0.011 NA   NA
 2099431 2099432 BCG_1144 BCG_1145   PE_PGRS21 FALSE 0.025 177.000 0.000 NA   NA
 2099432 2099433 BCG_1145 BCG_1146 PE_PGRS21   FALSE 0.025 177.000 0.000 NA   NA
 2099433 2099434 BCG_1146 BCG_1147   PE9 FALSE 0.037 153.000 0.000 NA   NA
 2099434 2099435 BCG_1147 BCG_1148 PE9 PE10 FALSE 0.212 -121.000 0.000 NA   NA
 2099435 2099436 BCG_1148 BCG_1149 PE10 celA2a FALSE 0.006 386.000 0.000 1.000   NA
 2099436 2099437 BCG_1149 BCG_1150 celA2a celA2b TRUE 0.842 -22.000 0.000 0.001   NA
 2099437 2099438 BCG_1150 BCG_1151 celA2b PE_PGRS22 FALSE 0.003 415.000 0.000 NA   NA
 2099440 2099441 BCG_1153 BCG_1154 glyA1 desA2 FALSE 0.320 105.000 0.143 1.000   NA
 2099441 2099442 BCG_1154 BCG_1155 desA2 phoH2 FALSE 0.047 211.000 0.046 1.000   NA
 2099442 2099443 BCG_1155 BCG_1156 phoH2   FALSE 0.231 87.000 0.108 1.000 N NA
 2099444 2099445 BCG_1157c BCG_1158c   fum TRUE 0.925 -3.000 0.014 NA   NA
 2099445 2099446 BCG_1158c BCG_1159c fum   FALSE 0.320 31.000 0.071 1.000 N NA
 2099448 2099449 BCG_1161c BCG_1162c     FALSE 0.011 240.000 0.000 NA   NA
 2099449 2099450 BCG_1162c BCG_1163c     TRUE 0.974 0.000 0.286 1.000   NA
 2099451 2099452 BCG_1164 BCG_1165     FALSE 0.005 321.000 0.000 NA   NA
 2099453 2099454 BCG_1166c BCG_1167c   xseB TRUE 0.562 10.000 0.009 1.000 N NA
 2099454 2099455 BCG_1167c BCG_1168c xseB xseA TRUE 0.989 -10.000 0.412 0.001 Y NA
 2099455 2099456 BCG_1168c BCG_1169c xseA   TRUE 0.931 -3.000 0.024 NA   NA
 2099459 2099460 BCG_1172 BCG_1173     FALSE 0.118 88.000 0.000 NA   NA
 2099460 2099461 BCG_1173 BCG_1174     TRUE 0.992 -3.000 0.689 NA   NA
 2099461 2099462 BCG_1174 BCG_1175     FALSE 0.017 203.000 0.000 NA   NA
 2099462 2099463 BCG_1175 BCG_1176     FALSE 0.074 118.000 0.000 NA   NA
 2099466 2099467 BCG_1179c BCG_1180c     FALSE 0.184 33.000 0.000 NA   NA
 2099467 2099468 BCG_1180c BCG_1181c     TRUE 0.985 -3.000 0.000 0.005   NA
 2099469 2099470 BCG_1182 BCG_1183 zwf1 gnd2 TRUE 0.862 22.000 0.062 1.000 Y NA
 2099472 2099473 BCG_1185 BCG_1186 ephC   TRUE 0.849 5.000 0.070 NA   NA
 2099474 2099475 BCG_1187c BCG_1188c   ppdK TRUE 0.992 -3.000 0.750 NA   NA
 2099475 2099476 BCG_1188c BCG_1189c ppdK   FALSE 0.015 213.000 0.000 NA   NA
 2099476 2099477 BCG_1189c BCG_1190c     FALSE 0.107 102.000 0.000 NA   NA
 2099478 2099479 BCG_1191 BCG_1192   gltA1 TRUE 0.975 -3.000 0.216 1.000   NA
 2099479 2099480 BCG_1192 BCG_1193 gltA1   FALSE 0.434 12.000 0.000 NA   NA
 2099484 2099485 BCG_1197 BCG_1198     FALSE 0.229 50.000 0.000 1.000   NA
 2099486 2099487 BCG_1199c BCG_1200c     FALSE 0.317 17.000 0.000 NA   NA
 2099487 2099488 BCG_1200c BCG_1201c     TRUE 0.971 -3.000 0.176 1.000   NA
 2099490 2099491 BCG_1203c BCG_1204c echA11 echA10 TRUE 0.625 143.000 0.000 0.007 Y NA
 2099492 2099493 BCG_1205 BCG_1206 mcr   TRUE 0.908 12.000 0.636 1.000 N NA
 2099493 2099494 BCG_1206 BCG_1207   mmpL13 FALSE 0.004 515.000 0.000 1.000   NA
 2099494 2099495 BCG_1207 BCG_1208 mmpL13   FALSE 0.180 133.000 0.080 1.000   NA
 2099497 2099498 BCG_1210 BCG_1211     FALSE 0.257 -31.000 0.000 NA   NA
 2099501 2099502 BCG_1214c BCG_1215c omt   TRUE 0.951 -3.000 0.091 NA   NA
 2099503 2099504 BCG_1216 BCG_1217     FALSE 0.005 434.000 0.000 1.000   NA
 2099505 2099506 BCG_1218c BCG_1219c     TRUE 0.867 8.000 0.222 NA   NA
 2099509 2099510 BCG_1222 BCG_1223 mutT2 narG FALSE 0.003 308.000 0.000 1.000 N NA
 2099510 2099511 BCG_1223 BCG_1224 narG narH TRUE 0.944 39.000 0.227 0.001 Y NA
 2099511 2099512 BCG_1224 BCG_1225 narH narJ TRUE 0.920 57.000 0.182 0.002 Y NA
 2099512 2099513 BCG_1225 BCG_1226 narJ narI TRUE 0.994 3.000 0.059 0.002 Y NA
 2099513 2099514 BCG_1226 BCG_1227 narI typA FALSE 0.256 22.000 0.002 1.000 N NA
 2099514 2099515 BCG_1227 BCG_1228 typA lpqW FALSE 0.148 98.000 0.025 1.000 N NA
 2099516 2099517 BCG_1229c BCG_1230c   PPE17b FALSE 0.130 72.000 0.000 NA   NA
 2099517 2099518 BCG_1230c BCG_1231c PPE17b PPE17a FALSE 0.240 -46.000 0.000 NA   NA
 2099518 2099519 BCG_1231c BCG_1232c PPE17a PE11 FALSE 0.298 18.000 0.000 NA   NA
 2099520 2099521 BCG_1233 BCG_1234 mshB   FALSE 0.523 92.000 0.387 NA   NA
 2099524 2099525 BCG_1237c BCG_1238c   fadH FALSE 0.018 201.000 0.000 NA   NA
 2099525 2099526 BCG_1238c BCG_1239c fadH   TRUE 0.907 -3.000 0.093 NA N NA
 2099527 2099528 BCG_1240 BCG_1241 fdxC   FALSE 0.243 33.000 0.029 1.000 N NA
 2099530 2099531 BCG_1243 BCG_1244 pks3 papA3 FALSE 0.466 53.000 0.250 NA   NA
 2099531 2099532 BCG_1244 BCG_1245 papA3 mmpL10 TRUE 0.795 67.000 1.000 NA   NA
 2099533 2099534 BCG_1246c BCG_1247c   fadD21 FALSE 0.029 165.000 0.000 NA   NA
 2099534 2099535 BCG_1247c BCG_1248c fadD21   FALSE 0.213 177.000 0.000 NA Y NA
 2099536 2099537 BCG_1249 BCG_1250 rocA   TRUE 0.938 0.000 0.181 1.000 N NA
 2099537 2099538 BCG_1250 BCG_1251   sigI FALSE 0.070 82.000 0.000 1.000 N NA
 2099538 2099539 BCG_1251 BCG_1252 sigI   FALSE 0.192 82.000 0.000 1.000   NA
 2099539 2099540 BCG_1252 BCG_1253   fadD36 TRUE 0.579 40.000 0.000 0.045   NA
 2099542 2099543 BCG_1255 BCG_1256 PE13 PPE18 FALSE 0.152 47.000 0.000 NA   NA
 2099543 2099544 BCG_1256 BCG_1257 PPE18 esxK FALSE 0.054 135.000 0.000 NA   NA
 2099544 2099545 BCG_1257 BCG_1258 esxK esxL FALSE 0.146 51.000 0.000 NA   NA
 2099550 2099551 BCG_1263c BCG_1264c     FALSE 0.290 31.000 0.000 1.000   NA
 2099552 2099553 BCG_1265 BCG_1266   fadD6 FALSE 0.541 50.000 0.324 NA   NA
 2099553 2099554 BCG_1266 BCG_1267 fadD6 folP2 FALSE 0.305 66.000 0.172 1.000 N NA
 2099554 2099555 BCG_1267 BCG_1268 folP2   TRUE 0.957 -3.000 0.136 NA   NA
 2099555 2099556 BCG_1268 BCG_1269     FALSE 0.306 39.000 0.045 NA   NA
 2099556 2099557 BCG_1269 BCG_1270   tagA TRUE 0.924 -3.000 0.013 NA   NA
 2099557 2099558 BCG_1270 BCG_1271 tagA   FALSE 0.159 108.000 0.021 NA   NA
 2099561 2099562 BCG_1274c BCG_1275c PE14   FALSE 0.056 134.000 0.000 NA   NA
 2099562 2099563 BCG_1275c BCG_1276c     FALSE 0.486 28.000 0.080 1.000   NA
 2099563 2099564 BCG_1276c BCG_1277c     TRUE 0.657 9.000 0.111 NA N NA
 2099564 2099565 BCG_1277c BCG_1278c     TRUE 0.939 -3.000 0.185 NA N NA
 2099565 2099566 BCG_1278c BCG_1279c     FALSE 0.552 -10.000 0.000 1.000   NA
 2099566 2099567 BCG_1279c BCG_1280c     FALSE 0.077 142.000 0.000 1.000   NA
 2099568 2099569 BCG_1281 BCG_1282 sigE   FALSE 0.140 158.000 0.224 NA   NA
 2099569 2099570 BCG_1282 BCG_1283   htrA TRUE 0.679 69.000 0.607 NA   NA
 2099570 2099571 BCG_1283 BCG_1284 htrA tatB TRUE 0.935 2.000 0.242 1.000 N NA
 2099572 2099573 BCG_1285c BCG_1286c     FALSE 0.175 111.000 0.054 NA   NA
 2099573 2099574 BCG_1286c BCG_1287c     TRUE 0.989 -3.000 0.542 NA   NA
 2099576 2099577 BCG_1289c BCG_1290c mrp   TRUE 0.584 13.000 0.089 1.000 N NA
 2099577 2099578 BCG_1290c BCG_1291c     FALSE 0.185 125.000 0.139 NA   NA
 2099578 2099579 BCG_1291c BCG_1292c     TRUE 0.993 -3.000 0.806 NA   NA
 2099579 2099580 BCG_1292c BCG_1293c     FALSE 0.135 62.000 0.000 NA   NA
 2099581 2099582 BCG_1294 BCG_1295   lpqY TRUE 0.613 21.000 0.211 NA   NA
 2099582 2099583 BCG_1295 BCG_1296 lpqY sugA TRUE 0.998 -3.000 0.252 0.022 Y NA
 2099583 2099584 BCG_1296 BCG_1297 sugA sugB TRUE 0.997 5.000 0.723 0.022 Y NA
 2099584 2099585 BCG_1297 BCG_1298 sugB sugC TRUE 0.991 5.000 0.191 0.022 Y NA
 2099587 2099588 BCG_1300 BCG_1301 mdh   FALSE 0.128 76.000 0.000 NA   NA
 2099588 2099589 BCG_1301 BCG_1302     TRUE 0.993 -3.000 0.800 NA   NA
 2099592 2099593 BCG_1305c BCG_1306c     FALSE 0.142 57.000 0.000 NA   NA
 2099593 2099594 BCG_1306c BCG_1307c     TRUE 0.987 -3.000 0.000 NA Y NA
 2099594 2099595 BCG_1307c BCG_1308c   kgd FALSE 0.006 113.000 0.000 NA N NA
 2099595 2099596 BCG_1308c BCG_1309c kgd   FALSE 0.034 193.000 0.013 NA   NA
 2099598 2099599 BCG_1311c BCG_1312c   lprE FALSE 0.338 56.000 0.133 NA   NA
 2099600 2099601 BCG_1313 BCG_1314 deaD   TRUE 0.881 -3.000 0.006 1.000 N NA
 2099602 2099603 BCG_1315c BCG_1316c     TRUE 0.958 -3.000 0.143 NA   NA
 2099604 2099605 BCG_1317 BCG_1318     TRUE 0.672 2.000 0.016 NA N NA
 2099605 2099606 BCG_1318 BCG_1319     TRUE 0.828 -15.000 0.000 0.009   NA
 2099607 2099608 BCG_1320c BCG_1321c     TRUE 0.873 5.000 0.136 NA   NA
 2099609 2099610 BCG_1322 BCG_1323 amiB2   FALSE 0.074 75.000 0.000 1.000 N NA
 2099610 2099611 BCG_1323 BCG_1324     FALSE 0.027 173.000 0.000 NA   NA
 2099612 2099613 BCG_1325c BCG_1326c pknH embR FALSE 0.054 341.000 0.000 1.000 Y NA
 2099613 2099614 BCG_1326c BCG_1327c embR   FALSE 0.009 311.000 0.000 1.000   NA
 2099614 2099615 BCG_1327c BCG_1328c     FALSE 0.013 223.000 0.000 NA   NA
 2099615 2099616 BCG_1328c BCG_1329c   lprA TRUE 0.716 61.000 0.667 NA   NA
 2099616 2099617 BCG_1329c BCG_1330c lprA   FALSE 0.015 213.000 0.000 NA   NA
 2099617 2099618 BCG_1330c BCG_1331c     FALSE 0.093 108.000 0.000 NA   NA
 2099618 2099619 BCG_1331c BCG_1332c     TRUE 0.999 -3.000 1.000 0.003 Y NA
 2099620 2099621 BCG_1333 BCG_1334 lprB lprC TRUE 0.992 -3.000 0.692 NA   NA
 2099623 2099624 BCG_1336 BCG_1337     TRUE 0.995 -3.000 0.312 NA Y NA
 2099624 2099625 BCG_1337 BCG_1338     FALSE 0.182 21.000 0.017 NA N NA
 2099626 2099627 BCG_1339c BCG_1340c oppA oppD TRUE 0.962 -7.000 0.242 1.000 Y NA
 2099627 2099628 BCG_1340c BCG_1341c oppD oppC TRUE 0.996 -3.000 0.303 1.000 Y NA
 2099628 2099629 BCG_1341c BCG_1342c oppC oppB TRUE 0.999 -3.000 0.846 0.022 Y NA
 2099630 2099631 BCG_1343 BCG_1344 canA cysD FALSE 0.244 94.000 0.136 1.000 N NA
 2099631 2099632 BCG_1344 BCG_1345 cysD cysN TRUE 0.994 0.000 0.483 0.001 N NA
 2099632 2099633 BCG_1345 BCG_1346 cysN   FALSE 0.172 54.000 0.073 NA N NA
 2099633 2099634 BCG_1346 BCG_1347     FALSE 0.141 58.000 0.000 NA   NA
 2099634 2099635 BCG_1347 BCG_1348     FALSE 0.149 49.000 0.000 NA   NA
 2099638 5582088 BCG_1351c BCG_t16   tRNA-Arg FALSE 0.004 359.000 0.000 NA   NA
 2099640 2099641 BCG_1352 BCG_1353 argS lysA TRUE 0.933 -3.000 0.071 1.000 N NA
 2099641 2099642 BCG_1353 BCG_1354 lysA thrA TRUE 0.979 4.000 0.071 1.000 Y NA
 2099642 2099643 BCG_1354 BCG_1355 thrA thrC TRUE 0.994 -3.000 0.194 1.000 Y NA
 2099643 2099644 BCG_1355 BCG_1356 thrC thrB FALSE 0.261 218.000 0.221 1.000 Y NA
 2099644 2099645 BCG_1356 BCG_1357 thrB rho FALSE 0.037 257.000 0.000 0.085 N NA
 2099645 2099646 BCG_1357 BCG_1358 rho rpmE FALSE 0.085 151.000 0.115 1.000 N NA
 2099646 2099647 BCG_1358 BCG_1359 rpmE prfA TRUE 0.720 90.000 0.110 1.000 Y NA
 2099647 2099648 BCG_1359 BCG_1360 prfA hemK TRUE 0.992 -3.000 0.069 1.000 Y NA
 2099648 2099649 BCG_1360 BCG_1361 hemK   TRUE 0.961 16.000 0.583 NA Y NA
 2099649 2099650 BCG_1361 BCG_1362   rfe FALSE 0.299 84.000 0.248 NA N NA
 2099650 2099651 BCG_1362 BCG_1363 rfe   FALSE 0.016 257.000 0.000 1.000   NA
 2099651 2099652 BCG_1363 BCG_1364   atpB TRUE 0.720 -7.000 0.021 1.000   NA
 2099652 2099653 BCG_1364 BCG_1365 atpB atpE TRUE 0.963 49.000 0.557 0.003 Y NA
 2099653 2099654 BCG_1365 BCG_1366 atpE atpF TRUE 0.918 31.000 0.012 0.003 Y NA
 2099654 2099655 BCG_1366 BCG_1367 atpF atpH TRUE 0.987 7.000 0.008 0.003 Y NA
 2099655 2099656 BCG_1367 BCG_1368 atpH atpA TRUE 0.978 45.000 0.864 0.003 Y NA
 2099656 2099657 BCG_1368 BCG_1369 atpA atpG TRUE 0.997 7.000 0.846 0.003 Y NA
 2099657 2099658 BCG_1369 BCG_1370 atpG atpD TRUE 0.975 40.000 0.724 0.003 Y NA
 2099658 2099659 BCG_1370 BCG_1371 atpD atpC TRUE 0.993 14.000 0.837 0.003 Y NA
 2099659 2099660 BCG_1371 BCG_1372 atpC   TRUE 0.768 8.000 0.054 NA   NA
 2099661 2099662 BCG_1373c BCG_1374c     TRUE 0.766 -25.000 0.000 0.009   NA
 2099662 2099663 BCG_1374c BCG_1375c     FALSE 0.049 166.000 0.000 1.000   NA
 2099664 5582089 BCG_1376 BCG_r17 murA 16S_rRNA FALSE 0.008 269.000 0.000 NA   NA
 5582089 5582090 BCG_r17 BCG_r18 16S_rRNA 23S_rRNA FALSE 0.008 276.000 0.000 NA   NA
 5582090 5582091 BCG_r18 BCG_r19 23S_rRNA 5S_rRNA FALSE 0.103 104.000 0.000 NA   NA
 2099668 2099669 BCG_1377c BCG_1378c ogt alkA TRUE 0.998 -3.000 0.093 0.001 Y NA
 2099669 2099670 BCG_1378c BCG_1379c alkA   FALSE 0.071 81.000 0.000 1.000 N NA
 2099670 2099671 BCG_1379c BCG_1380c     TRUE 0.864 70.000 0.000 0.002 Y NA
 2099671 2099672 BCG_1380c BCG_1381c     TRUE 0.966 13.000 0.000 0.002 Y NA
 2099673 2099674 BCG_1382 BCG_1383     FALSE 0.514 23.000 0.141 NA   NA
 2099676 2099677 BCG_1385 BCG_1386 fadA4   FALSE 0.089 130.000 0.035 1.000 N NA
 2099678 2099679 BCG_1387c BCG_1388c PE_PGRS24 glgB FALSE 0.038 152.000 0.000 NA   NA
 2099679 2099680 BCG_1388c BCG_1389c glgB glgE TRUE 0.988 8.000 0.159 0.004 Y NA
 2099682 2099683 BCG_1391c BCG_1392c dinG   FALSE 0.395 24.000 0.080 1.000 N NA
 2099684 2099685 BCG_1393 BCG_1394     TRUE 0.872 -40.000 0.823 NA   NA
 2099685 2099686 BCG_1394 BCG_1395     TRUE 0.563 17.000 0.093 NA   NA
 2099686 2099687 BCG_1395 BCG_1396     TRUE 0.758 8.000 0.044 NA   NA
 2099687 2099688 BCG_1396 BCG_1397     FALSE 0.495 22.000 0.093 NA   NA
 2099688 2099689 BCG_1397 BCG_1398   cysM TRUE 0.661 10.000 0.052 1.000 N NA
 2099689 2099690 BCG_1398 BCG_1399 cysM   TRUE 0.695 -9.000 0.032 1.000   NA
 2099690 2099691 BCG_1399 BCG_1400   murI TRUE 0.951 -3.000 0.024 1.000   NA
 2099691 2099692 BCG_1400 BCG_1401 murI   FALSE 0.466 27.000 0.054 1.000   NA
 2099692 2099693 BCG_1401 BCG_1402   rphA TRUE 0.598 17.000 0.053 1.000   NA
 2099693 2099694 BCG_1402 BCG_1403 rphA   FALSE 0.477 39.000 0.262 1.000 N NA
 2099695 2099696 BCG_1404c BCG_1405c   lprD TRUE 0.977 -3.000 0.286 NA   NA
 2099697 2099698 BCG_1406 BCG_1407   fadD33 TRUE 0.966 -7.000 0.286 1.000 Y NA
 2099698 2099699 BCG_1407 BCG_1408 fadD33 fadE14 TRUE 0.992 0.000 0.200 1.000 Y NA
 5582092 2099702 BCG_t20 BCG_1410 tRNA-Leu   FALSE 0.011 236.000 0.000 NA   NA
 2099702 2099703 BCG_1410 BCG_1411     TRUE 0.999 -3.000 0.686 0.003 Y NA
 2099703 2099704 BCG_1411 BCG_1412   fabG2 FALSE 0.035 129.000 0.000 1.000 N NA
 2099704 2099705 BCG_1412 BCG_1413 fabG2   TRUE 0.876 -3.000 0.000 NA   NA
 2099705 2099706 BCG_1413 BCG_1414     FALSE 0.017 203.000 0.000 NA   NA
 2099707 2099708 BCG_1415c BCG_1416c     FALSE 0.174 20.000 0.000 1.000 N NA
 2099708 2099709 BCG_1416c BCG_1417c   moeY FALSE 0.413 9.000 0.000 1.000 N NA
 2099709 2099710 BCG_1417c BCG_1418c moeY   TRUE 0.966 -3.000 0.200 NA   NA
 2099710 2099711 BCG_1418c BCG_1419c     FALSE 0.003 473.000 0.000 NA   NA
 2099712 2099713 BCG_1420 BCG_1421     TRUE 0.569 82.000 0.000 0.005   NA
 2099713 2099714 BCG_1421 BCG_1422     FALSE 0.000 423.000 0.000 NA N NA
 2099715 2099716 BCG_1423c BCG_1424c PPE19   FALSE 0.005 315.000 0.000 NA   NA
 2099716 2099717 BCG_1424c BCG_1425c     TRUE 0.876 -3.000 0.000 NA   NA
 2099717 2099718 BCG_1425c BCG_1426c     FALSE 0.006 291.000 0.000 NA   NA
 2099718 2099719 BCG_1426c BCG_1427c     FALSE 0.398 139.000 0.000 1.000 Y NA
 2099722 2099723 BCG_1430 BCG_1431 lprF   FALSE 0.019 196.000 0.000 NA   NA
 2099723 2099724 BCG_1431 BCG_1432     FALSE 0.273 -478.000 0.000 1.000   NA
 2099724 2099725 BCG_1432 BCG_1433     TRUE 0.909 -3.000 0.028 1.000 N NA
 2099725 2099726 BCG_1433 BCG_1434     TRUE 0.760 6.000 0.000 1.000   NA
 2099728 2099729 BCG_1436 BCG_1437     TRUE 0.976 -3.000 0.282 NA   NA
 2099730 2099731 BCG_1438c BCG_1439c     FALSE 0.485 11.000 0.000 NA   NA
 2099732 2099733 BCG_1440 BCG_1441 pyrR pyrB TRUE 0.995 -3.000 0.247 1.000 Y NA
 2099733 2099734 BCG_1441 BCG_1442 pyrB pyrC TRUE 0.997 -3.000 0.452 1.000 Y NA
 2099734 2099735 BCG_1442 BCG_1443 pyrC   TRUE 0.943 -3.000 0.057 NA   NA
 2099735 2099736 BCG_1443 BCG_1444   carA TRUE 0.941 -3.000 0.050 NA   NA
 2099736 2099737 BCG_1444 BCG_1445 carA carB TRUE 0.998 0.000 0.345 0.001 Y NA
 2099737 2099738 BCG_1445 BCG_1446 carB pyrF TRUE 0.992 -3.000 0.075 1.000 Y NA
 2099738 2099739 BCG_1446 BCG_1447 pyrF PE15 FALSE 0.020 195.000 0.000 NA   NA
 2099739 2099740 BCG_1447 BCG_1448 PE15 PPE20 TRUE 0.991 -3.000 0.667 NA   NA
 2099740 2099741 BCG_1448 BCG_1449 PPE20 mihF FALSE 0.006 306.000 0.000 NA   NA
 2099741 2099742 BCG_1449 BCG_1450 mihF gmk FALSE 0.157 135.000 0.054 1.000   NA
 2099742 2099743 BCG_1450 BCG_1451 gmk rpoZ TRUE 0.579 66.000 0.471 1.000 N NA
 2099743 2099744 BCG_1451 BCG_1452 rpoZ dfp TRUE 0.620 16.000 0.192 1.000 N NA
 2099744 2099745 BCG_1452 BCG_1453 dfp metK FALSE 0.547 128.000 0.059 1.000 Y NA
 2099746 2099747 BCG_1454c BCG_1455c   cyp132 TRUE 0.969 -3.000 0.000 0.062 N NA
 2099749 2099750 BCG_1457c BCG_1458c PE_PGRS25   FALSE 0.010 255.000 0.000 NA   NA
 2099750 2099751 BCG_1458c BCG_1459c     TRUE 0.876 -3.000 0.000 NA   NA
 2099751 2099752 BCG_1459c BCG_1460c   lipH FALSE 0.190 83.000 0.000 1.000   NA
 2099752 2099753 BCG_1460c BCG_1461c lipH lipI TRUE 0.948 25.000 0.250 0.023 Y NA
 2099754 2099755 BCG_1462 BCG_1463   priA FALSE 0.240 81.000 0.050 NA   NA
 2099759 2099760 BCG_1467 BCG_1468 fmt fmu TRUE 0.996 -3.000 0.305 1.000 Y NA
 2099760 2099761 BCG_1468 BCG_1469 fmu rpe FALSE 0.348 25.000 0.056 1.000 N NA
 2099761 2099762 BCG_1469 BCG_1470 rpe ribG TRUE 0.909 -3.000 0.028 1.000 N NA
 2099763 2099764 BCG_1471c BCG_1472c   lprG TRUE 0.855 6.000 0.143 NA   NA
 2099765 2099766 BCG_1473 BCG_1474 ribC   FALSE 0.015 214.000 0.000 NA   NA
 2099766 2099767 BCG_1474 BCG_1475     FALSE 0.419 -10.000 0.000 NA   NA
 2099767 2099768 BCG_1475 BCG_1476   ribA2 FALSE 0.100 105.000 0.000 NA   NA
 2099768 2099769 BCG_1476 BCG_1477 ribA2 ribH TRUE 0.968 15.000 0.041 0.002 Y NA
 2099769 2099770 BCG_1477 BCG_1478 ribH   TRUE 0.925 -3.000 0.014 NA   NA
 2099770 2099771 BCG_1478 BCG_1479   lprH FALSE 0.492 25.000 0.143 NA   NA
 2099771 2099772 BCG_1479 BCG_1480 lprH   FALSE 0.024 180.000 0.000 NA   NA
 2099772 2099773 BCG_1480 BCG_1481   uvrC FALSE 0.134 64.000 0.000 NA   NA
 2099773 2099774 BCG_1481 BCG_1482 uvrC   TRUE 0.949 -3.000 0.073 NA   NA
 2099774 2099775 BCG_1482 BCG_1483     TRUE 0.974 -3.000 0.259 NA   NA
 2099775 2099776 BCG_1483 BCG_1484   whiA TRUE 0.987 -3.000 0.470 NA   NA
 2099779 2099780 BCG_1487c BCG_1488c lipO fadD12 TRUE 0.998 0.000 0.857 1.000 Y NA
 2099780 2099781 BCG_1488c BCG_1489c fadD12   TRUE 0.991 4.000 0.429 1.000 Y NA
 2099782 2099783 BCG_1490 BCG_1491   PE16 FALSE 0.011 240.000 0.000 NA   NA
 2099783 2099784 BCG_1491 BCG_1492 PE16   FALSE 0.084 111.000 0.000 NA   NA
 2099784 2099785 BCG_1492 BCG_1493     TRUE 0.988 -3.000 0.500 NA   NA
 2099785 2099786 BCG_1493 BCG_1494     FALSE 0.030 164.000 0.000 NA   NA
 2099786 2099787 BCG_1494 BCG_1495     TRUE 0.837 0.000 0.000 NA   NA
 2099789 2099790 BCG_1497 BCG_1498 gap pgk TRUE 0.994 3.000 0.055 0.003 Y NA
 2099790 2099791 BCG_1498 BCG_1499 pgk tpi TRUE 0.992 -3.000 0.075 1.000 Y NA
 2099796 2099797 BCG_1504c BCG_1505c     FALSE 0.002 599.000 0.000 NA   NA
 2099797 2099798 BCG_1505c BCG_1506c   devB FALSE 0.491 17.000 0.038 NA   NA
 2099798 2099799 BCG_1506c BCG_1507c devB opcA TRUE 0.992 -3.000 0.179 NA Y NA
 2099799 2099800 BCG_1507c BCG_1508c opcA zwf2 TRUE 0.731 53.000 0.104 NA Y NA
 2099800 2099801 BCG_1508c BCG_1509c zwf2 tal TRUE 0.992 -3.000 0.067 1.000 Y NA
 2099801 2099802 BCG_1509c BCG_1510c tal tkt TRUE 0.897 17.000 0.090 1.000 Y NA
 2099802 2099803 BCG_1510c BCG_1511c tkt PE_PGRS27 FALSE 0.003 439.000 0.000 NA   NA
 2099809 2099810 BCG_1517c BCG_1518c     FALSE 0.445 112.000 0.022 0.045   NA
 2099810 2099811 BCG_1518c BCG_1519c     TRUE 0.972 -3.000 0.186 1.000   NA
 2099811 2099812 BCG_1519c BCG_1520c     FALSE 0.222 156.000 0.357 NA   NA
 2099813 2099814 BCG_1521 BCG_1522     TRUE 0.940 -3.000 0.100 1.000 N NA
 2099814 2099815 BCG_1522 BCG_1523     TRUE 0.993 -3.000 0.266 0.001 N NA
 2099815 2099816 BCG_1523 BCG_1524     TRUE 0.997 -3.000 0.482 1.000 Y NA
 2099816 2099817 BCG_1524 BCG_1525   csd TRUE 0.883 2.000 0.093 1.000 N NA
 2099817 2099818 BCG_1525 BCG_1526 csd   TRUE 0.967 -3.000 0.249 1.000 N NA
 2099818 2099819 BCG_1526 BCG_1527     FALSE 0.556 -25.000 0.152 NA   NA
 2099820 2099821 BCG_1528c BCG_1529c fadE15 PE_PGRS29 FALSE 0.324 107.000 0.222 NA   NA
 2099822 2099823 BCG_1530 BCG_1531 ctpD trxA FALSE 0.190 44.000 0.018 1.000 N NA
 2099823 2099824 BCG_1531 BCG_1532 trxA trxB1 TRUE 0.974 16.000 0.222 0.003 Y NA
 2099824 2099825 BCG_1532 BCG_1533 trxB1 echA12 TRUE 0.820 22.000 0.636 1.000 N NA
 2099825 2099826 BCG_1533 BCG_1534 echA12   FALSE 0.441 36.000 0.090 1.000   NA
 2099826 2099827 BCG_1534 BCG_1535     FALSE 0.334 97.000 0.191 NA   NA
 2099828 2099829 BCG_1536c BCG_1537c   acn TRUE 0.807 11.000 0.256 1.000 N NA
 2099830 2099831 BCG_1538 BCG_1539     FALSE 0.013 226.000 0.000 NA   NA
 2099831 2099832 BCG_1539 BCG_1540     TRUE 0.830 11.000 0.250 NA   NA
 2099832 2099833 BCG_1540 BCG_1541   moxR1 FALSE 0.135 139.000 0.120 NA   NA
 2099833 2099834 BCG_1541 BCG_1542 moxR1   TRUE 0.994 -3.000 0.920 NA   NA
 2099834 2099835 BCG_1542 BCG_1543     TRUE 0.947 11.000 0.760 NA   NA
 2099837 2099838 BCG_1545 BCG_1546 fabG1 inhA TRUE 0.882 19.000 0.078 1.000 Y NA
 2099838 2099839 BCG_1546 BCG_1547 inhA hemZ TRUE 0.738 6.000 0.038 1.000 N NA
 2099841 2099842 BCG_1549 BCG_1550     TRUE 0.893 22.000 0.259 NA Y NA
 2099842 2099843 BCG_1550 BCG_1551     TRUE 0.720 10.000 0.049 NA   NA
 2099843 2099844 BCG_1551 BCG_1552     FALSE 0.181 34.000 0.000 NA   NA
 2099844 2099845 BCG_1552 BCG_1553     FALSE 0.040 150.000 0.000 NA   NA
 2099847 2099848 BCG_1555 BCG_1556 mutA mutB TRUE 0.996 1.000 0.115 0.001 Y NA
 2099848 2099849 BCG_1556 BCG_1557 mutB   FALSE 0.379 14.000 0.000 NA   NA
 2099849 2099850 BCG_1557 BCG_1558     TRUE 0.876 -3.000 0.000 NA   NA
 2099850 2099851 BCG_1558 BCG_1559     TRUE 0.793 -3.000 0.000 1.000 N NA
 2099851 2099852 BCG_1559 BCG_1560   lipL FALSE 0.163 53.000 0.011 1.000 N NA
 2099853 2099854 BCG_1561c BCG_1562c     FALSE 0.015 214.000 0.000 NA   NA
 2099855 2099856 BCG_1563 BCG_1564     FALSE 0.155 45.000 0.000 NA   NA
 2099856 2099857 BCG_1564 BCG_1565     TRUE 0.596 12.000 0.167 NA N NA
 2099857 2099858 BCG_1565 BCG_1566     FALSE 0.042 213.000 0.105 NA   NA
 2099859 2099860 BCG_1567c BCG_1568c     FALSE 0.132 137.000 0.027 1.000   NA
 2099861 2099862 BCG_1569 BCG_1570     TRUE 0.566 9.000 0.000 NA   NA
 2099862 2099863 BCG_1570 BCG_1571     FALSE 0.062 130.000 0.000 NA   NA
 2099863 2099864 BCG_1571 BCG_1572     FALSE 0.222 26.000 0.000 NA   NA
 2099864 2099865 BCG_1572 BCG_1573   fadD25 FALSE 0.001 234.000 0.000 NA N NA
 2099867 2099868 BCG_1575 BCG_1576     FALSE 0.118 30.000 0.000 1.000 N NA
 2099868 2099869 BCG_1576 BCG_1577   wbbL2 FALSE 0.152 47.000 0.000 NA   NA
 2099870 2099871 BCG_1578c BCG_1579c   pks5 FALSE 0.154 23.000 0.000 1.000 N NA
 2099871 2099872 BCG_1579c BCG_1580c pks5 papA4 FALSE 0.002 544.000 0.000 NA   NA
 2099873 2099874 BCG_1581 BCG_1582 fadD24 adh FALSE 0.042 117.000 0.000 1.000 N NA
 2099874 2099875 BCG_1582 BCG_1583 adh   TRUE 0.978 -3.000 0.300 NA   NA
 2099877 2099878 BCG_1585 BCG_1586     TRUE 0.924 -3.000 0.000 1.000   NA
 2099878 2099879 BCG_1586 BCG_1587     FALSE 0.002 565.000 0.000 NA   NA
 2099879 2099880 BCG_1587 BCG_1588   ileS FALSE 0.006 307.000 0.000 NA   NA
 2099880 2099881 BCG_1588 BCG_1589 ileS dinX FALSE 0.019 212.000 0.014 1.000 N NA
 2099883 2099884 BCG_1591 BCG_1592 lspA   TRUE 0.656 -7.000 0.073 1.000 N NA
 2099885 2099886 BCG_1593c BCG_1594c lprI glbN FALSE 0.273 55.000 0.050 NA   NA
 2099887 2099888 BCG_1595 BCG_1596     TRUE 0.689 5.000 0.000 NA   NA
 2099888 2099889 BCG_1596 BCG_1597     TRUE 0.837 0.000 0.000 NA   NA
 2099889 2099890 BCG_1597 BCG_1598     FALSE 0.261 22.000 0.000 NA   NA
 2099890 2099891 BCG_1598 BCG_1599     FALSE 0.149 49.000 0.000 NA   NA
 2099891 2099892 BCG_1599 BCG_1600   dnaE1 FALSE 0.186 68.000 0.003 NA   NA
 2099894 2099895 BCG_1602 BCG_1603 fadD11 plsB1 TRUE 0.975 14.000 0.333 0.100 Y NA
 2099895 2099896 BCG_1603 BCG_1604 plsB1 frdA FALSE 0.002 370.000 0.000 1.000 N NA
 2099896 2099897 BCG_1604 BCG_1605 frdA frdBC TRUE 0.997 3.000 0.470 0.003 Y NA
 2099897 2099898 BCG_1605 BCG_1606 frdBC frdD TRUE 0.996 -3.000 0.000 0.003 Y NA
 2099898 2099899 BCG_1606 BCG_1607 frdD   FALSE 0.076 68.000 0.000 1.000 N NA
 2099899 2099900 BCG_1607 BCG_1608   mmpS6 FALSE 0.327 139.000 0.429 NA   NA
 2099900 2099901 BCG_1608 BCG_1609 mmpS6 mmpL6 TRUE 0.992 -3.000 0.750 NA   NA
 2099901 2099902 BCG_1609 BCG_1610 mmpL6   FALSE 0.535 10.000 0.000 NA   NA
 2099902 2099903 BCG_1610 BCG_1611   ilvA FALSE 0.305 35.000 0.033 NA   NA
 2099903 2099904 BCG_1611 BCG_1612 ilvA   FALSE 0.014 38.000 0.000 NA N NA
 2099904 2099905 BCG_1612 BCG_1613     TRUE 0.648 6.000 0.000 NA   NA
 2099906 2099907 BCG_1614c BCG_1615c treZb treZa TRUE 0.986 -3.000 0.000 0.004   NA
 2099907 2099908 BCG_1615c BCG_1616c treZa treY TRUE 0.905 -7.000 0.000 0.004   NA
 2099908 2099909 BCG_1616c BCG_1617c treY treX TRUE 0.992 4.000 0.061 0.004 Y NA
 2099909 2099910 BCG_1617c BCG_1618c treX   FALSE 0.286 39.000 0.073 1.000 N NA
 2099910 2099911 BCG_1618c BCG_1619c     FALSE 0.427 99.000 0.400 NA N NA
 2099911 2099912 BCG_1619c BCG_1620c     FALSE 0.011 240.000 0.000 NA   NA
 2099913 2099914 BCG_1621 BCG_1622 bioA bioF1 TRUE 0.998 -3.000 0.033 0.001 Y NA
 2099914 2099915 BCG_1622 BCG_1623 bioF1 bioD TRUE 0.998 -3.000 0.214 0.001 Y NA
 2099915 2099916 BCG_1623 BCG_1624 bioD   TRUE 0.938 0.000 0.036 1.000   NA
 2099917 2099918 BCG_1625c BCG_1626c     FALSE 0.198 -229.000 0.000 NA   NA
 2099919 2099920 BCG_1627 BCG_1628 bioB   TRUE 0.893 1.000 0.041 NA   NA
 2099920 2099921 BCG_1628 BCG_1629     TRUE 0.982 -3.000 0.361 NA   NA
 2099922 2099923 BCG_1630c BCG_1631c     FALSE 0.050 257.000 0.273 NA   NA
 2099924 2099925 BCG_1632 BCG_1633 nadA nadB TRUE 0.997 0.000 0.210 0.003 Y NA
 2099925 2099926 BCG_1633 BCG_1634 nadB nadC TRUE 0.997 0.000 0.223 0.003 Y NA
 2099926 2099927 BCG_1634 BCG_1635 nadC   FALSE 0.231 49.000 0.000 1.000   NA
 2099929 2099930 BCG_1637 BCG_1638 hisD hisC1 TRUE 0.998 -3.000 0.112 0.003 Y NA
 2099930 2099931 BCG_1638 BCG_1639 hisC1 hisB TRUE 0.999 -3.000 0.341 0.003 Y NA
 2099931 2099932 BCG_1639 BCG_1640 hisB hisH TRUE 0.997 -3.000 0.046 0.003 Y NA
 2099932 2099933 BCG_1640 BCG_1641 hisH hisA TRUE 0.993 10.000 0.491 0.003 Y NA
 2099933 2099934 BCG_1641 BCG_1642 hisA impA TRUE 0.868 8.000 0.266 1.000 N NA
 2099934 2099935 BCG_1642 BCG_1643 impA hisF TRUE 0.820 2.000 0.021 1.000 N NA
 2099935 2099936 BCG_1643 BCG_1644 hisF hisI TRUE 0.999 -3.000 0.430 0.003 Y NA
 2099936 2099937 BCG_1644 BCG_1645 hisI chaA FALSE 0.023 181.000 0.002 1.000 N NA
 2099939 2099940 BCG_1647 BCG_1648 trpE   TRUE 0.924 -10.000 0.690 NA   NA
 2099940 2099941 BCG_1648 BCG_1649   trpC FALSE 0.254 90.000 0.070 NA   NA
 2099941 2099942 BCG_1649 BCG_1650 trpC trpB TRUE 0.903 69.000 0.070 0.001 Y NA
 2099942 2099943 BCG_1650 BCG_1651 trpB trpA TRUE 0.997 0.000 0.153 0.001 Y NA
 2099943 2099944 BCG_1651 BCG_1652 trpA lgt TRUE 0.854 0.000 0.011 1.000 N NA
 2099944 2099945 BCG_1652 BCG_1653 lgt   FALSE 0.002 676.000 0.000 NA   NA
 2099945 2099946 BCG_1653 BCG_1654     TRUE 0.677 -10.000 0.111 NA   NA
 2099946 2099947 BCG_1654 BCG_1655   pykA FALSE 0.273 108.000 0.083 1.000   NA
 2099947 2099948 BCG_1655 BCG_1656 pykA tesB1 TRUE 0.905 8.000 0.361 1.000 N NA
 2099948 2099949 BCG_1656 BCG_1657 tesB1   FALSE 0.416 58.000 0.214 NA   NA
 2099950 2099951 BCG_1658c BCG_1659c cydC cydD TRUE 0.999 -3.000 0.631 0.003 Y NA
 2099951 2099952 BCG_1659c BCG_1660c cydD cydB TRUE 0.735 87.000 0.151 1.000 Y NA
 2099952 2099953 BCG_1660c BCG_1661c cydB cydA TRUE 0.979 30.000 0.925 0.044 Y NA
 2099953 2099954 BCG_1661c BCG_1662c cydA   FALSE 0.208 111.000 0.104 NA   NA
 2099954 2099955 BCG_1662c BCG_1663c   cya FALSE 0.481 29.000 0.176 NA   NA
 2099955 5582093 BCG_1663c BCG_t21 cya tRNA-Leu FALSE 0.044 145.000 0.000 NA   NA
 2099958 2099959 BCG_1665c BCG_1666c     TRUE 0.994 -3.000 0.850 NA   NA
 2099960 2099961 BCG_1667 BCG_1668 polA rpsA FALSE 0.031 163.000 0.005 1.000 N NA
 2099961 2099962 BCG_1668 BCG_1669 rpsA coaE FALSE 0.276 26.000 0.024 1.000 N NA
 2099964 2099965 BCG_1671 BCG_1672 uvrB   TRUE 0.944 -3.000 0.006 1.000   NA
 2099970 2099971 BCG_1677c BCG_1678c     FALSE 0.340 16.000 0.000 NA   NA
 2099971 2099972 BCG_1678c BCG_1679c   lysX FALSE 0.277 59.000 0.057 NA   NA
 2099973 2099974 BCG_1680 BCG_1681 infC rpmI TRUE 0.915 50.000 0.652 1.000 Y NA
 2099974 2099975 BCG_1681 BCG_1682 rpmI rplT TRUE 0.970 62.000 0.928 0.015 Y NA
 2099975 2099976 BCG_1682 BCG_1683 rplT tsnR TRUE 0.908 33.000 0.057 0.012 Y NA
 2099978 2099979 BCG_1685 BCG_1686 PE17   FALSE 0.317 78.000 0.143 NA   NA
 2099979 2099980 BCG_1686 BCG_1687     TRUE 0.875 7.000 0.214 NA   NA
 2099980 2099981 BCG_1687 BCG_1688   pheS FALSE 0.028 196.000 0.002 NA   NA
 2099981 2099982 BCG_1688 BCG_1689 pheS pheT TRUE 0.999 0.000 0.574 0.001 Y NA
 2099984 2099985 BCG_1691 BCG_1692 argC argJ TRUE 0.999 -3.000 0.303 0.002 Y NA
 2099985 2099986 BCG_1692 BCG_1693 argJ argB TRUE 0.998 -3.000 0.239 0.002 Y NA
 2099986 2099987 BCG_1693 BCG_1694 argB argD TRUE 0.993 -3.000 0.105 1.000 Y NA
 2099987 2099988 BCG_1694 BCG_1695 argD argF TRUE 0.993 -3.000 0.091 1.000 Y NA
 2099988 2099989 BCG_1695 BCG_1696 argF argR TRUE 0.937 -3.000 0.088 1.000 N NA
 2099989 2099990 BCG_1696 BCG_1697 argR argG TRUE 0.691 9.000 0.054 1.000 N NA
 2099990 2099991 BCG_1697 BCG_1698 argG argH TRUE 0.806 80.000 0.278 1.000 Y NA
 2099991 2099992 BCG_1698 BCG_1699 argH pks10 FALSE 0.090 109.000 0.003 1.000 N NA
 2099992 2099993 BCG_1699 BCG_1700 pks10 pks7 TRUE 0.967 83.000 1.000 0.018 Y NA
 2099993 2099994 BCG_1700 BCG_1701 pks7 pks8 TRUE 0.989 20.000 1.000 0.008 Y NA
 2099994 2099995 BCG_1701 BCG_1702 pks8 pks17 TRUE 0.994 0.000 0.000 0.009 Y NA
 2099995 2099996 BCG_1702 BCG_1703 pks17 pks9 TRUE 0.985 6.000 0.000 0.005 Y NA
 2099996 2099997 BCG_1703 BCG_1704 pks9 pks11 TRUE 0.877 147.000 0.750 0.018 Y NA
 2099998 2099999 BCG_1705c BCG_1706c cyp139   TRUE 0.576 15.000 0.008 1.000   NA
 2100000 2100001 BCG_1707 BCG_1708     FALSE 0.184 33.000 0.000 NA   NA
 2100001 2100002 BCG_1708 BCG_1709     TRUE 0.590 8.000 0.000 NA   NA
 2100003 2100004 BCG_1710c BCG_1711c     FALSE 0.009 93.000 0.000 NA N NA
 2100004 2100005 BCG_1711c BCG_1712c     FALSE 0.018 28.000 0.000 NA N NA
 2100005 2100006 BCG_1712c BCG_1713c     FALSE 0.024 325.000 0.000 0.027 N NA
 2100007 2100008 BCG_1714 BCG_1715   dsbF TRUE 0.987 -3.000 0.000 0.003   NA
 2100008 2100009 BCG_1715 BCG_1716 dsbF   FALSE 0.108 101.000 0.000 NA   NA
 2100009 2100010 BCG_1716 BCG_1717   fadE16 TRUE 0.914 0.000 0.037 NA   NA
 2100010 2100011 BCG_1717 BCG_1718 fadE16   TRUE 0.782 9.000 0.222 NA N NA
 2100011 2100012 BCG_1718 BCG_1719   moeX TRUE 0.940 -3.000 0.047 NA   NA
 2100012 2100013 BCG_1719 BCG_1720 moeX   FALSE 0.032 161.000 0.000 NA   NA
 2100013 2100014 BCG_1720 BCG_1721     FALSE 0.014 218.000 0.000 NA   NA
 2100014 2100015 BCG_1721 BCG_1722     TRUE 0.620 -7.000 0.013 NA   NA
 2100016 2100017 BCG_1723c BCG_1724c     TRUE 0.973 2.000 0.400 1.000   NA
 2100017 2100018 BCG_1724c BCG_1725c     TRUE 0.850 72.000 0.089 0.081 Y NA
 2100019 2100020 BCG_1726 BCG_1727   tyrS TRUE 0.593 12.000 0.067 1.000 N NA
 2100020 2100021 BCG_1727 BCG_1728 tyrS lprJ FALSE 0.002 651.000 0.000 NA   NA
 2100021 2100022 BCG_1728 BCG_1729 lprJ   FALSE 0.167 39.000 0.000 NA   NA
 2100022 2100023 BCG_1729 BCG_1730     TRUE 0.990 -3.000 0.500 1.000   NA
 2100023 2100024 BCG_1730 BCG_1731     TRUE 0.963 -3.000 0.083 1.000   NA
 2100024 2100025 BCG_1731 BCG_1732   tlyA TRUE 0.787 8.000 0.014 1.000   NA
 2100025 2100026 BCG_1732 BCG_1733 tlyA ppnK TRUE 0.923 0.000 0.120 1.000 N NA
 2100026 2100027 BCG_1733 BCG_1734 ppnK recN TRUE 0.568 14.000 0.094 1.000 N NA
 2100027 2100028 BCG_1734 BCG_1735 recN   FALSE 0.538 96.000 0.049 0.081   NA
 2100028 2100029 BCG_1735 BCG_1736     TRUE 0.875 22.000 0.798 NA   NA
 2100029 2100030 BCG_1736 BCG_1737   pyrG FALSE 0.081 140.000 0.014 NA   NA
 2100030 2100031 BCG_1737 BCG_1738 pyrG   TRUE 0.757 -7.000 0.055 1.000   NA
 2100031 2100032 BCG_1738 BCG_1739     TRUE 0.960 -3.000 0.063 1.000   NA
 2100033 2100034 BCG_1740c BCG_1741c     FALSE 0.002 555.000 0.000 NA   NA
 2100034 2100035 BCG_1741c BCG_1742c   cycA FALSE 0.208 65.000 0.000 1.000   NA
 2100035 2100036 BCG_1742c BCG_1743c cycA PPE22 FALSE 0.014 41.000 0.000 NA N NA
 2100036 2100037 BCG_1743c BCG_1744c PPE22 PPE23 TRUE 0.674 40.000 0.000 NA Y NA
 2100037 2100038 BCG_1744c BCG_1745c PPE23   FALSE 0.002 604.000 0.000 NA   NA
 2100039 2100040 BCG_1746 BCG_1747     FALSE 0.187 18.000 0.000 1.000 N NA
 2100040 2100041 BCG_1747 BCG_1748     TRUE 0.946 -3.000 0.065 NA   NA
 2100041 2100042 BCG_1748 BCG_1749     TRUE 0.989 -3.000 0.570 NA   NA
 2100042 2100043 BCG_1749 BCG_1750     TRUE 0.952 -3.000 0.224 NA N NA
 2100043 2100044 BCG_1750 BCG_1751   cmk TRUE 0.918 -3.000 0.042 1.000 N NA
 2100044 2100045 BCG_1751 BCG_1752 cmk engA TRUE 0.988 -3.000 0.060 0.014   NA
 2100045 2100046 BCG_1752 BCG_1753 engA   FALSE 0.045 174.000 0.000 1.000   NA
 2100046 2100047 BCG_1753 BCG_1754   fadB3 TRUE 0.938 -6.000 0.000 1.000 Y NA
 2100047 2100048 BCG_1754 BCG_1755 fadB3   TRUE 0.897 3.000 0.105 NA   NA
 2100048 2100049 BCG_1755 BCG_1756     TRUE 0.837 0.000 0.000 NA   NA
 2100049 2100050 BCG_1756 BCG_1757     FALSE 0.145 53.000 0.000 NA   NA
 2100050 2100051 BCG_1757 BCG_1758     FALSE 0.027 208.000 0.000 1.000   NA
 2100051 5582094 BCG_1758 BCG_t22   tRNA-Pro FALSE 0.020 193.000 0.000 NA   NA
 2100053 2100054 BCG_1759c BCG_1760c     TRUE 0.961 -3.000 0.167 NA   NA
 2100055 2100056 BCG_1761 BCG_1762     TRUE 0.943 -3.000 0.121 1.000 N NA
 2100057 2100058 BCG_1763c BCG_1764c     FALSE 0.419 -10.000 0.000 NA   NA
 2100059 2100060 BCG_1765 BCG_1766     FALSE 0.184 33.000 0.000 NA   NA
 2100061 2100062 BCG_1767c BCG_1768c     TRUE 0.876 -3.000 0.000 NA   NA
 2100062 2100063 BCG_1768c BCG_1769c     FALSE 0.011 66.000 0.000 NA N NA
 2100065 2100066 BCG_1771c BCG_1772c     FALSE 0.134 64.000 0.000 NA   NA
 2100066 2100067 BCG_1772c BCG_1773c     FALSE 0.007 287.000 0.000 NA   NA
 2100067 2100068 BCG_1773c BCG_1774c     FALSE 0.013 275.000 0.000 1.000   NA
 2100068 2100069 BCG_1774c BCG_1775c   narX FALSE 0.005 440.000 0.000 1.000   NA
 2100069 2100070 BCG_1775c BCG_1776c narX narK2 TRUE 0.793 -3.000 0.000 1.000 N NA
 2100073 2100074 BCG_1779 BCG_1780     TRUE 0.837 0.000 0.000 NA   NA
 2100074 2100075 BCG_1780 BCG_1781     FALSE 0.124 81.000 0.000 NA   NA
 2100075 2100076 BCG_1781 BCG_1782   pknE FALSE 0.116 94.000 0.000 NA   NA
 2100077 2100078 BCG_1783c BCG_1784c   idi FALSE 0.130 71.000 0.000 NA   NA
 2100079 2100080 BCG_1785 BCG_1786 pknF   FALSE 0.394 62.000 0.000 0.081 N NA
 2100080 2100081 BCG_1786 BCG_1787     FALSE 0.004 373.000 0.000 NA   NA
 2100082 2100083 BCG_1788c BCG_1789c   fadD1 FALSE 0.120 84.000 0.000 NA   NA
 2100084 2100085 BCG_1790 BCG_1791     FALSE 0.066 127.000 0.000 NA   NA
 2100086 2100087 BCG_1792c BCG_1793c PPE24   FALSE 0.017 204.000 0.000 NA   NA
 2100087 2100088 BCG_1793c BCG_1794c   plcD FALSE 0.023 184.000 0.000 NA   NA
 2100088 2100089 BCG_1794c BCG_1795c plcD   FALSE 0.462 129.000 0.000 1.000 Y NA
 2100090 2100091 BCG_1796 BCG_1797   mmpL14 FALSE 0.031 201.000 0.000 1.000   NA
 2100091 2100092 BCG_1797 BCG_1798 mmpL14 cut1 FALSE 0.009 321.000 0.000 1.000   NA
 2100093 2100094 BCG_1799c BCG_1800c wag22b wag22a TRUE 0.876 -3.000 0.000 NA   NA
 2100096 2100097 BCG_1802c BCG_1803c     TRUE 0.992 0.000 1.000 NA   NA
 2100097 2100098 BCG_1803c BCG_1804c     FALSE 0.049 140.000 0.000 NA   NA
 2100098 2100099 BCG_1804c BCG_1805c     FALSE 0.113 98.000 0.000 NA   NA
 2100099 2100100 BCG_1805c BCG_1806c     FALSE 0.032 161.000 0.000 NA   NA
 2100101 2100102 BCG_1807 BCG_1808     TRUE 0.932 0.000 0.080 NA   NA
 2100105 2100106 BCG_1811c BCG_1812c     FALSE 0.036 156.000 0.000 NA   NA
 2100109 2100110 BCG_1815 BCG_1816     TRUE 0.995 -3.000 1.000 NA   NA
 2100112 2100113 BCG_1818 BCG_1819   PPE25 FALSE 0.001 270.000 0.000 NA N NA
 2100113 2100114 BCG_1819 BCG_1820 PPE25 PE18 FALSE 0.126 79.000 0.000 NA   NA
 2100114 2100115 BCG_1820 BCG_1821 PE18 PPE26 TRUE 0.907 14.000 0.667 NA   NA
 2100115 2100116 BCG_1821 BCG_1822 PPE26 PPE27 FALSE 0.029 454.000 0.000 NA Y NA
 2100116 2100117 BCG_1822 BCG_1823 PPE27 PE19 FALSE 0.003 427.000 0.000 NA   NA
 2100117 2100118 BCG_1823 BCG_1824 PE19 esxM FALSE 0.044 144.000 0.000 NA   NA
 2100118 2100119 BCG_1824 BCG_1825 esxM esxN TRUE 0.732 51.000 0.667 NA   NA
 2100119 2100120 BCG_1825 BCG_1826 esxN   FALSE 0.555 88.000 0.429 NA   NA
 2100120 2100121 BCG_1826 BCG_1827     FALSE 0.008 272.000 0.000 NA   NA
 2100121 2100122 BCG_1827 BCG_1828     TRUE 0.915 -22.000 1.000 NA   NA
 2100122 2100123 BCG_1828 BCG_1829     TRUE 0.995 -3.000 1.000 NA   NA
 2100123 2100124 BCG_1829 BCG_1830     TRUE 0.991 -3.000 0.667 NA   NA
 2100124 2100125 BCG_1830 BCG_1831   lppT FALSE 0.002 627.000 0.000 NA   NA
 2100125 2100126 BCG_1831 BCG_1832 lppT PPE28 FALSE 0.105 103.000 0.000 NA   NA
 2100126 2100127 BCG_1832 BCG_1833 PPE28 PPE29 FALSE 0.023 581.000 0.000 NA Y NA
 2100127 2100128 BCG_1833 BCG_1834 PPE29 PPE30 FALSE 0.485 112.000 0.000 NA Y NA
 2100129 2100130 BCG_1835c BCG_1836c PE_PGRS32b PE_PGRS32a FALSE 0.181 34.000 0.000 NA   NA
 2100130 2100131 BCG_1836c BCG_1837c PE_PGRS32a   FALSE 0.024 181.000 0.000 NA   NA
 2100131 2100132 BCG_1837c BCG_1838c     FALSE 0.005 338.000 0.000 NA   NA
 2100133 2100134 BCG_1839 BCG_1840 PE20 PPE31 FALSE 0.213 27.000 0.000 NA   NA
 2100134 2100135 BCG_1840 BCG_1841 PPE31 PPE32 FALSE 0.050 324.000 0.000 NA Y NA
 2100135 2100136 BCG_1841 BCG_1842 PPE32 PPE33a FALSE 0.499 132.000 0.667 NA   NA
 2100136 2100137 BCG_1842 BCG_1843 PPE33a PPE33b TRUE 0.797 1.000 0.000 NA   NA
 2100137 2100138 BCG_1843 BCG_1844 PPE33b   FALSE 0.011 239.000 0.000 NA   NA
 2100138 2100139 BCG_1844 BCG_1845     FALSE 0.063 154.000 0.014 NA   NA
 2100140 2100141 BCG_1846c BCG_1847c     FALSE 0.005 322.000 0.000 NA   NA
 2100142 2100143 BCG_1848 BCG_1849 erg3   FALSE 0.195 105.000 0.045 NA   NA
 2100143 2100144 BCG_1849 BCG_1850     FALSE 0.210 63.000 0.000 1.000   NA
 2100144 2100145 BCG_1850 BCG_1851     FALSE 0.002 558.000 0.000 NA   NA
 2100145 2100146 BCG_1851 BCG_1852     TRUE 0.876 -3.000 0.000 NA   NA
 2100147 2100148 BCG_1853c BCG_1854c PE_PGRS33   FALSE 0.054 135.000 0.000 NA   NA
 2100149 2100150 BCG_1855 BCG_1856 ilvG secA2 FALSE 0.536 15.000 0.082 1.000 N NA
 2100150 2100151 BCG_1856 BCG_1857 secA2 pgsA2 FALSE 0.029 197.000 0.038 1.000 N NA
 2100151 2100152 BCG_1857 BCG_1858 pgsA2   TRUE 0.737 -7.000 0.114 NA   NA
 2100152 2100153 BCG_1858 BCG_1859     TRUE 0.692 29.000 0.409 NA   NA
 2100153 2100154 BCG_1859 BCG_1860     TRUE 0.803 17.000 0.409 NA   NA
 2100154 2100155 BCG_1860 BCG_1861   gcvH TRUE 0.661 38.000 0.434 NA   NA
 2100155 2100156 BCG_1861 BCG_1862 gcvH cfp17 FALSE 0.033 240.000 0.242 NA N NA
 2100156 2100157 BCG_1862 BCG_1863 cfp17   TRUE 0.989 -3.000 0.707 NA N NA
 2100157 2100158 BCG_1863 BCG_1864     FALSE 0.194 119.000 0.133 NA   NA
 2100158 2100159 BCG_1864 BCG_1865     FALSE 0.009 348.000 0.043 NA   NA
 2100159 2100160 BCG_1865 BCG_1866     FALSE 0.249 53.000 0.028 NA   NA
 2100160 2100161 BCG_1866 BCG_1867   gcvB FALSE 0.207 49.000 0.002 NA   NA
 2100164 2100165 BCG_1870c BCG_1871c     FALSE 0.340 16.000 0.000 NA   NA
 2100165 2100166 BCG_1871c BCG_1872c   glcB FALSE 0.173 120.000 0.089 NA   NA
 2100166 2100167 BCG_1872c BCG_1873c glcB   FALSE 0.008 276.000 0.000 NA   NA
 2100167 2100168 BCG_1873c BCG_1874c     TRUE 0.876 -3.000 0.000 NA   NA
 2100168 2100169 BCG_1874c BCG_1875c   PE_PGRS34b FALSE 0.139 59.000 0.000 NA   NA
 2100169 2100170 BCG_1875c BCG_1876c PE_PGRS34b PE_PGRS34a FALSE 0.188 -318.000 0.000 NA   NA
 2100170 2100171 BCG_1876c BCG_1877c PE_PGRS34a   FALSE 0.030 163.000 0.000 NA   NA
 2100171 2100172 BCG_1877c BCG_1878c     TRUE 0.996 0.000 0.815 0.042   NA
 2100172 2100173 BCG_1878c BCG_1879c   guaB1 FALSE 0.189 174.000 0.038 0.096   NA
 2100173 2100174 BCG_1879c BCG_1880c guaB1 gnd1 FALSE 0.221 -634.000 0.023 1.000 N NA
 2100174 2100175 BCG_1880c BCG_1881c gnd1   FALSE 0.151 90.000 0.023 1.000 N NA
 2100175 2100176 BCG_1881c BCG_1882c     TRUE 0.917 15.000 0.850 1.000 N NA
 2100177 2100178 BCG_1883 BCG_1884   ureA FALSE 0.326 49.000 0.222 NA N NA
 2100178 2100179 BCG_1884 BCG_1885 ureA ureB TRUE 0.998 -3.000 0.052 0.001 Y NA
 2100179 2100180 BCG_1885 BCG_1886 ureB ureC TRUE 0.999 0.000 0.486 0.001 Y NA
 2100180 2100181 BCG_1886 BCG_1887 ureC ureF TRUE 0.984 0.000 0.061 0.002 N NA
 2100181 2100182 BCG_1887 BCG_1888 ureF ureG TRUE 0.992 11.000 0.439 0.002 Y NA
 2100182 2100183 BCG_1888 BCG_1889 ureG ureD TRUE 0.955 8.000 0.032 0.002   NA
 2100184 2100185 BCG_1890c BCG_1891c ndh   TRUE 0.707 141.000 0.500 1.000 Y NA
 2100185 2100186 BCG_1891c BCG_1892c     TRUE 0.694 39.000 0.571 1.000 N NA
 2100187 2100188 BCG_1893 BCG_1894 modA modB TRUE 0.998 3.000 0.578 0.001 Y NA
 2100188 2100189 BCG_1894 BCG_1895 modB modC TRUE 0.961 7.000 0.018 1.000 Y NA
 2100189 2100190 BCG_1895 BCG_1896 modC apa FALSE 0.350 53.000 0.052 1.000   NA
 2100190 2100191 BCG_1896 BCG_1897 apa   FALSE 0.017 452.000 0.238 1.000   NA
 2100191 2100192 BCG_1897 BCG_1898   adhA FALSE 0.427 75.000 0.189 1.000   NA
 2100193 2100194 BCG_1899c BCG_1900c     FALSE 0.490 -7.000 0.000 NA   NA
 2100194 2100195 BCG_1900c BCG_1901c     TRUE 0.924 -3.000 0.000 1.000   NA
 2100196 2100197 BCG_1902 BCG_1903     FALSE 0.017 288.000 0.143 1.000 N NA
 2100197 2100198 BCG_1903 BCG_1904     FALSE 0.309 99.000 0.214 1.000 N NA
 2100199 2100200 BCG_1905c BCG_1906c     FALSE 0.206 67.000 0.000 1.000   NA
 2100200 2100201 BCG_1906c BCG_1907c     FALSE 0.133 65.000 0.000 NA   NA
 2100201 2100202 BCG_1907c BCG_1908c   lldD2 FALSE 0.251 23.000 0.000 NA   NA
 2100203 2100204 BCG_1909 BCG_1910     FALSE 0.130 73.000 0.000 NA   NA
 2100204 2100205 BCG_1910 BCG_1911     TRUE 0.784 11.000 0.188 NA   NA
 2100205 2100206 BCG_1911 BCG_1912   bfrA FALSE 0.004 516.000 0.000 1.000   NA
 2100206 2100207 BCG_1912 BCG_1913 bfrA   FALSE 0.359 85.000 0.135 1.000   NA
 2100207 2100208 BCG_1913 BCG_1914     TRUE 0.596 -685.000 0.000 0.044   NA
 2100208 2100209 BCG_1914 BCG_1915   glnA3 FALSE 0.222 55.000 0.000 1.000   NA
 2100209 2100210 BCG_1915 BCG_1916 glnA3   TRUE 0.967 3.000 0.364 1.000   NA
 2100211 2100212 BCG_1917c BCG_1918c cyp140 lppE FALSE 0.493 50.000 0.273 NA   NA
 2100212 2100213 BCG_1918c BCG_1919c lppE   FALSE 0.331 41.000 0.070 NA   NA
 2100213 2100214 BCG_1919c BCG_1920c     FALSE 0.420 28.000 0.093 NA   NA
 2100214 2100215 BCG_1920c BCG_1921c   rpfC TRUE 0.618 39.000 0.375 NA   NA
 2100215 2100216 BCG_1921c BCG_1922c rpfC   TRUE 0.669 12.000 0.018 1.000   NA
 2100216 2100217 BCG_1922c BCG_1923c   fbpB FALSE 0.434 18.000 0.018 NA   NA
 2100219 2100220 BCG_1925c BCG_1926c     FALSE 0.004 365.000 0.000 NA   NA
 2100220 2100221 BCG_1926c BCG_1927c     FALSE 0.157 44.000 0.000 NA   NA
 2100221 2100222 BCG_1927c BCG_1928c     FALSE 0.139 59.000 0.000 NA   NA
 2100223 2100224 BCG_1929 BCG_1930     TRUE 0.767 17.000 0.333 NA   NA
 2100224 2100225 BCG_1930 BCG_1931     TRUE 0.903 10.000 0.375 NA   NA
 2100227 2100228 BCG_1933 BCG_1934     TRUE 0.983 -3.000 0.000 0.016   NA
 2100229 2100230 BCG_1935c BCG_1936c     FALSE 0.466 5.000 0.004 NA N NA
 2100232 2100233 BCG_1938c BCG_1939c lppD lipJ TRUE 0.837 0.000 0.000 NA   NA
 2100236 2100237 BCG_1942 BCG_1943     FALSE 0.022 186.000 0.000 NA   NA
 2100238 2100239 BCG_1944c BCG_1945c aao   FALSE 0.441 30.000 0.143 NA   NA
 2100239 2100240 BCG_1945c BCG_1946c     FALSE 0.005 340.000 0.000 NA   NA
 2100240 2100241 BCG_1946c BCG_1947c   katG TRUE 0.617 7.000 0.000 NA   NA
 2100241 2100242 BCG_1947c BCG_1948c katG furA TRUE 0.781 38.000 0.057 1.000 Y NA
 2100242 2100243 BCG_1948c BCG_1949c furA   FALSE 0.100 105.000 0.000 NA   NA
 2100243 2100244 BCG_1949c BCG_1950c   lppC FALSE 0.121 83.000 0.000 NA   NA
 2100244 2100245 BCG_1950c BCG_1951c lppC fadB5 FALSE 0.110 100.000 0.000 NA   NA
 2100249 2100250 BCG_1955c BCG_1956c PPE34 PPE35b FALSE 0.005 338.000 0.000 NA   NA
 2100250 2100251 BCG_1956c BCG_1957c PPE35b PPE35a FALSE 0.121 83.000 0.000 NA   NA
 2100251 2100252 BCG_1957c BCG_1958c PPE35a   FALSE 0.003 449.000 0.000 NA   NA
 2100255 2100256 BCG_1961 BCG_1962   lipD TRUE 0.986 -9.000 0.333 0.004 Y NA
 2100261 2100262 BCG_1967c BCG_1968c     FALSE 0.155 45.000 0.000 NA   NA
 2100262 2100263 BCG_1968c BCG_1969c     FALSE 0.434 12.000 0.000 NA   NA
 2100263 2100264 BCG_1969c BCG_1970c     FALSE 0.298 18.000 0.000 NA   NA
 2100266 2100267 BCG_1972c BCG_1973c fadE18 fadE17 TRUE 0.998 2.000 0.800 0.010 Y NA
 2100267 2100268 BCG_1973c BCG_1974c fadE17 echA13 TRUE 0.969 15.000 0.600 1.000 Y NA
 2100269 2100270 BCG_1975 BCG_1976     TRUE 0.992 3.000 0.500 NA Y NA
 2100270 2100271 BCG_1976 BCG_1977   ephB TRUE 0.958 12.000 1.000 1.000   NA
 2100271 2100272 BCG_1977 BCG_1978 ephB   TRUE 0.984 -3.000 0.333 1.000   NA
 2100272 2100273 BCG_1978 BCG_1979   ribA1 TRUE 0.954 -3.000 0.036 1.000   NA
 2100273 2100274 BCG_1979 BCG_1980 ribA1   TRUE 0.914 -3.000 0.036 1.000 N NA
 2100275 2100276 BCG_1981c BCG_1982c     TRUE 0.992 -3.000 0.750 NA   NA
 2100276 2100277 BCG_1982c BCG_1983c     TRUE 0.876 -3.000 0.000 NA   NA
 2100281 2100282 BCG_1987c BCG_1988c     FALSE 0.485 11.000 0.000 NA   NA
 2100282 2100283 BCG_1988c BCG_1989c     FALSE 0.270 21.000 0.000 NA   NA
 2100283 2100284 BCG_1989c BCG_1990c     TRUE 0.797 1.000 0.000 NA   NA
 2100285 2100286 BCG_1991 BCG_1992     TRUE 0.876 -3.000 0.000 NA   NA
 2100288 2100289 BCG_1994 BCG_1995     FALSE 0.161 42.000 0.000 NA   NA
 2100289 2100290 BCG_1995 BCG_1996     TRUE 0.924 -3.000 0.000 1.000   NA
 2100291 2100292 BCG_1997c BCG_1998c     FALSE 0.149 49.000 0.000 NA   NA
 2100292 2100293 BCG_1998c BCG_1999c     TRUE 0.983 -3.000 0.385 NA   NA
 2100295 2100296 BCG_2001c BCG_2001A     TRUE 0.939 4.000 0.286 NA   NA
 2100296 2100297 BCG_2001A BCG_2002c     FALSE 0.184 33.000 0.000 NA   NA
 2100298 2100299 BCG_2003 BCG_2004 yrbE3A   FALSE 0.120 85.000 0.000 NA   NA
 2100300 2100301 BCG_2005c BCG_2006c     TRUE 0.995 -3.000 1.000 NA   NA
 2100301 2100302 BCG_2006c BCG_2007c     FALSE 0.010 244.000 0.000 NA   NA
 2100302 2100303 BCG_2007c BCG_2008c     FALSE 0.118 89.000 0.000 NA   NA
 2100303 2100304 BCG_2008c BCG_2009c   ctpG FALSE 0.002 342.000 0.000 1.000 N NA
 2100304 2100305 BCG_2009c BCG_2010c ctpG   TRUE 0.876 -3.000 0.000 NA   NA
 2100305 2100306 BCG_2010c BCG_2011c     FALSE 0.145 53.000 0.000 NA   NA
 2100307 2100308 BCG_2012 BCG_2013     FALSE 0.115 96.000 0.000 NA   NA
 2100308 2100309 BCG_2013 BCG_2014   ctpF FALSE 0.010 202.000 0.000 1.000 N NA
 2100310 2100311 BCG_2015c BCG_2016c     FALSE 0.066 95.000 0.000 1.000 N NA
 2100312 2100313 BCG_2017 BCG_2018     TRUE 0.773 10.000 0.118 NA   NA
 2100313 2100314 BCG_2018 BCG_2019   fabG3 TRUE 0.651 76.000 0.000 1.000 Y NA
 2100315 2100316 BCG_2020c BCG_2021c     FALSE 0.219 58.000 0.000 1.000   NA
 2100316 2100317 BCG_2021c BCG_2022c     FALSE 0.377 22.000 0.000 1.000   NA
 2100319 2100320 BCG_2024c BCG_2025c fdxA   FALSE 0.021 189.000 0.000 NA   NA
 2100321 2100322 BCG_2026 BCG_2027     TRUE 0.797 1.000 0.000 NA   NA
 2100324 2100325 BCG_2029 BCG_2030     FALSE 0.002 704.000 0.000 NA   NA
 2100325 2100326 BCG_2030 BCG_2031     TRUE 0.736 -46.000 0.000 0.008   NA
 2100328 2100329 BCG_2033 BCG_2034     TRUE 0.876 -3.000 0.000 NA   NA
 2100329 2100330 BCG_2034 BCG_2035     FALSE 0.011 242.000 0.000 NA   NA
 2100330 2100331 BCG_2035 BCG_2036     TRUE 0.816 -10.000 0.294 NA   NA
 2100332 2100333 BCG_2037c BCG_2038c     FALSE 0.120 85.000 0.000 NA   NA
 2100333 2100334 BCG_2038c BCG_2039c     TRUE 0.913 9.000 0.375 NA   NA
 2100334 2100335 BCG_2039c BCG_2040c     FALSE 0.233 25.000 0.000 NA   NA
 2100335 2100336 BCG_2040c BCG_2041c     FALSE 0.033 160.000 0.000 NA   NA
 2100336 2100337 BCG_2041c BCG_2042c     FALSE 0.003 395.000 0.000 NA   NA
 2100337 2100338 BCG_2042c BCG_2043c     FALSE 0.023 184.000 0.000 NA   NA
 2100338 2100339 BCG_2043c BCG_2044c     FALSE 0.004 510.000 0.000 1.000   NA
 2100339 2100340 BCG_2044c BCG_2045c     FALSE 0.044 115.000 0.000 1.000 N NA
 2100340 2100341 BCG_2045c BCG_2046c     TRUE 0.714 40.000 0.000 1.000 Y NA
 2100341 2100342 BCG_2046c BCG_2047c     TRUE 0.667 61.000 0.000 1.000 Y NA
 2100342 2100343 BCG_2047c BCG_2048c   pfkB TRUE 0.793 -3.000 0.000 1.000 N NA
 2100343 2100344 BCG_2048c BCG_2049c pfkB   TRUE 0.593 17.000 0.050 1.000   NA
 2100344 2100345 BCG_2049c BCG_2050c   hspX TRUE 0.828 12.000 0.300 NA   NA
 2100348 2100349 BCG_2053 BCG_2054     TRUE 0.966 -3.000 0.200 NA   NA
 2100349 2100350 BCG_2054 BCG_2055     TRUE 0.959 -3.000 0.150 NA   NA
 2100351 2100352 BCG_2056c BCG_2057c     TRUE 0.976 2.000 0.444 1.000   NA
 2100352 2100353 BCG_2057c BCG_2058c     TRUE 0.994 3.000 0.211 0.020 Y NA
 2100353 2100354 BCG_2058c BCG_2059c     TRUE 0.971 -13.000 0.211 0.020 Y NA
 2100354 2100355 BCG_2059c BCG_2060c     TRUE 0.998 -3.000 0.235 0.020 Y NA
 2100355 2100356 BCG_2060c BCG_2061c     TRUE 0.714 38.000 0.118 0.026   NA
 2100356 2100357 BCG_2061c BCG_2062c   pncA TRUE 0.923 0.000 0.005 1.000   NA
 2100357 2100358 BCG_2062c BCG_2063c pncA   FALSE 0.163 41.000 0.000 NA   NA
 2100358 2100359 BCG_2063c BCG_2064c   lipT FALSE 0.119 86.000 0.000 NA   NA
 2100361 2100362 BCG_2066c BCG_2067c   pks12 TRUE 0.981 5.000 1.000 1.000 N NA
 2100362 2100363 BCG_2067c BCG_2068c pks12   FALSE 0.006 307.000 0.000 NA   NA
 2100365 2100366 BCG_2070c BCG_2071c ppm1   FALSE 0.332 158.000 0.041 0.003   NA
 2100366 2100367 BCG_2071c BCG_2072c     TRUE 0.867 5.000 0.037 1.000   NA
 2100369 2100370 BCG_2074c BCG_2075c rpsR2 rpsN2 TRUE 0.994 1.000 0.024 0.014 Y NA
 2100370 2100371 BCG_2075c BCG_2076c rpsN2 rpmG1 TRUE 0.993 2.000 0.052 0.014 Y NA
 2100371 2100372 BCG_2076c BCG_2077c rpmG1 rpmB2 TRUE 0.998 0.000 0.332 0.014 Y NA
 2100374 2100375 BCG_2080c BCG_2081c   cobN FALSE 0.295 84.000 0.045 1.000   NA
 2100376 2100377 BCG_2082 BCG_2083   cobG FALSE 0.006 387.000 0.000 1.000   NA
 2100377 2100378 BCG_2083 BCG_2084 cobG cobH TRUE 0.836 10.000 0.255 1.000 N NA
 2100378 2100379 BCG_2084 BCG_2085 cobH cobI TRUE 0.997 -3.000 0.096 0.008 Y NA
 2100380 2100381 BCG_2086c BCG_2087c   blaC FALSE 0.468 16.000 0.000 1.000   NA
 2100383 2100384 BCG_2089c BCG_2090c cobK cobM TRUE 0.908 37.000 0.076 0.008 Y NA
 2100384 2100385 BCG_2090c BCG_2091c cobM cobLb TRUE 0.997 -3.000 0.065 0.008 Y NA
 2100385 2100386 BCG_2091c BCG_2092c cobLb cobLa TRUE 0.794 -58.000 0.000 0.001   NA
 2100386 2100387 BCG_2092c BCG_2093c cobLa   FALSE 0.202 75.000 0.000 1.000   NA
 2100387 2100388 BCG_2093c BCG_2094c     FALSE 0.034 158.000 0.000 NA   NA
 2100388 2100389 BCG_2094c BCG_2095c     FALSE 0.178 35.000 0.000 NA   NA
 2100389 2100390 BCG_2095c BCG_2096c     TRUE 0.797 1.000 0.000 NA   NA
 2100391 2100392 BCG_2097 BCG_2098     TRUE 0.852 -18.000 0.500 NA   NA
 2100392 2100393 BCG_2098 BCG_2099   lppJ FALSE 0.327 -19.000 0.000 NA   NA
 2100395 2100396 BCG_2101 BCG_2102     TRUE 0.876 -3.000 0.000 NA   NA
 2100396 2100397 BCG_2102 BCG_2103     FALSE 0.490 -7.000 0.000 NA   NA
 2100397 2100398 BCG_2103 BCG_2104     FALSE 0.205 -180.000 0.000 NA   NA
 2100398 2100399 BCG_2104 BCG_2105     FALSE 0.121 83.000 0.000 NA   NA
 2100399 2100400 BCG_2105 BCG_2106     FALSE 0.315 -21.000 0.000 NA   NA
 2100400 2100401 BCG_2106 BCG_2107     FALSE 0.127 78.000 0.000 NA   NA
 2100401 2100402 BCG_2107 BCG_2108   pknJ FALSE 0.021 187.000 0.000 NA   NA
 2100405 2100406 BCG_2111c BCG_2112c   helY FALSE 0.354 42.000 0.105 NA   NA
 2100406 2100407 BCG_2112c BCG_2113c helY tatC FALSE