MicrobesOnline Operon Predictions for Pseudomonas mendocina ymp

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 3613187 3613188 Pmen_0001 Pmen_0002 dnaA   TRUE 0.959 35.000 0.328 1.000 Y NA
 3613188 3613189 Pmen_0002 Pmen_0003   recF TRUE 0.993 8.000 0.318 1.000 Y NA
 3613189 3613190 Pmen_0003 Pmen_0004 recF gyrB TRUE 0.996 5.000 0.249 0.005 Y NA
 3613191 3613192 Pmen_0005 Pmen_0006     TRUE 0.994 2.000 0.595 1.000   NA
 3613192 3613193 Pmen_0006 Pmen_0007     TRUE 0.942 10.000 0.140 NA   NA
 3613193 3613194 Pmen_0007 Pmen_0008     TRUE 0.935 -10.000 0.090 NA   NA
 3613194 3613195 Pmen_0008 Pmen_0009     TRUE 0.984 0.000 0.285 NA   NA
 3613195 3613196 Pmen_0009 Pmen_0010     TRUE 0.955 26.000 0.215 NA Y NA
 3613196 3613197 Pmen_0010 Pmen_0011     FALSE 0.285 211.000 0.000 1.000 Y NA
 3613197 3613198 Pmen_0011 Pmen_0012     TRUE 0.959 14.000 0.310 1.000 N NA
 3613198 3613199 Pmen_0012 Pmen_0013   glyS TRUE 0.437 70.000 0.123 1.000 N NA
 3613199 3613200 Pmen_0013 Pmen_0014 glyS glyQ TRUE 0.999 -3.000 0.651 0.001 Y NA
 3613201 3613202 Pmen_0015 Pmen_0016     FALSE 0.205 94.000 0.017 1.000 N NA
 3613202 3613203 Pmen_0016 Pmen_0017     FALSE 0.287 117.000 0.053 NA   NA
 3613203 3613204 Pmen_0017 Pmen_0018     FALSE 0.016 378.000 0.000 NA   NA
 3613204 3613205 Pmen_0018 Pmen_0019     FALSE 0.068 177.000 0.000 NA   NA
 3613205 3613206 Pmen_0019 Pmen_0020     TRUE 0.995 0.000 0.667 NA   NA
 3613207 3613208 Pmen_0021 Pmen_0022     TRUE 0.997 3.000 1.000 NA   NA
 3613208 3613209 Pmen_0022 Pmen_0023     TRUE 0.989 0.000 0.375 NA   NA
 3613209 3613210 Pmen_0023 Pmen_0024     TRUE 0.980 2.000 0.250 NA   NA
 3613210 3613211 Pmen_0024 Pmen_0025     TRUE 0.979 -13.000 0.333 NA   NA
 3613211 3613212 Pmen_0025 Pmen_0026     TRUE 0.611 161.000 0.385 NA   NA
 3613212 3613213 Pmen_0026 Pmen_0027     TRUE 0.987 -10.000 0.462 NA   NA
 3613213 3613214 Pmen_0027 Pmen_0028     TRUE 0.994 -3.000 0.600 NA   NA
 3613214 3613215 Pmen_0028 Pmen_0029     TRUE 0.979 11.000 0.222 0.013   NA
 3613215 3613216 Pmen_0029 Pmen_0030     TRUE 0.546 44.000 0.074 NA   NA
 3613216 3613217 Pmen_0030 Pmen_0031     TRUE 0.806 52.000 0.400 NA   NA
 3613217 3613218 Pmen_0031 Pmen_0032     FALSE 0.024 296.000 0.000 NA   NA
 3613218 3613219 Pmen_0032 Pmen_0033     FALSE 0.214 384.000 0.000 0.007 Y NA
 3613219 3613220 Pmen_0033 Pmen_0034     FALSE 0.018 359.000 0.000 NA   NA
 3613220 3613221 Pmen_0034 Pmen_0035     FALSE 0.384 31.000 0.000 NA   NA
 3613221 3613222 Pmen_0035 Pmen_0036     TRUE 0.745 -1733.000 0.000 NA   NA
 3613222 3613223 Pmen_0036 Pmen_0037     TRUE 0.531 20.000 0.000 NA   NA
 3613224 3613225 Pmen_0038 Pmen_0039     TRUE 0.857 0.000 0.000 1.000   NA
 3613225 3613226 Pmen_0039 Pmen_0040     TRUE 0.933 17.000 0.250 NA   NA
 3613226 3613227 Pmen_0040 Pmen_0041     TRUE 0.981 -3.000 0.250 NA   NA
 3613227 3613228 Pmen_0041 Pmen_0042     TRUE 0.978 3.000 0.250 NA   NA
 3613228 3613229 Pmen_0042 Pmen_0043     TRUE 0.996 -10.000 1.000 NA   NA
 3613229 3613230 Pmen_0043 Pmen_0044     TRUE 0.989 -3.000 0.400 NA   NA
 3613230 3613231 Pmen_0044 Pmen_0045     TRUE 0.953 -10.000 0.154 NA   NA
 3613231 3613232 Pmen_0045 Pmen_0046     TRUE 0.994 -3.000 0.231 1.000 Y NA
 3613232 3613233 Pmen_0046 Pmen_0047     TRUE 0.996 8.000 0.318 0.013 Y NA
 3613233 3613234 Pmen_0047 Pmen_0048     TRUE 0.996 1.000 0.273 0.077 Y NA
 3613234 3613235 Pmen_0048 Pmen_0049     TRUE 0.999 -3.000 0.875 0.077 Y NA
 3613235 3613236 Pmen_0049 Pmen_0050     FALSE 0.060 187.000 0.000 NA   NA
 3613237 3613238 Pmen_0051 Pmen_0052   trkA FALSE 0.134 89.000 0.000 1.000   NA
 3613238 3613239 Pmen_0052 Pmen_0053 trkA   TRUE 0.921 12.000 0.122 1.000 N NA
 3613239 3613240 Pmen_0053 Pmen_0054   fmt TRUE 0.995 -3.000 0.305 1.000 Y NA
 3613240 3613241 Pmen_0054 Pmen_0055 fmt def TRUE 0.879 53.000 0.105 0.020 Y NA
 3613242 3613243 Pmen_0056 Pmen_0057     FALSE 0.291 87.000 0.043 1.000   NA
 3613243 3613244 Pmen_0057 Pmen_0058     FALSE 0.229 67.000 0.023 NA N NA
 3613246 3613247 Pmen_0060 Pmen_0061   aroE FALSE 0.364 108.000 0.093 1.000 N NA
 3613248 3613249 Pmen_0062 Pmen_0063     TRUE 0.831 47.000 0.259 0.071 N NA
 3613249 3613250 Pmen_0063 Pmen_0064     TRUE 0.736 44.000 0.218 1.000 N NA
 3613251 3613252 Pmen_0065 Pmen_0066   pbpG FALSE 0.120 116.000 0.000 1.000 N NA
 3613255 3613256 Pmen_0069 Pmen_0070   trpA FALSE 0.093 156.000 0.000 1.000 N NA
 3613256 3613257 Pmen_0070 Pmen_0071 trpA   TRUE 0.998 -3.000 0.344 0.001 Y NA
 3613258 3613259 Pmen_0072 Pmen_0073     TRUE 0.791 5.000 0.000 NA   NA
 3613259 3613260 Pmen_0073 Pmen_0074     FALSE 0.179 54.000 0.000 NA   NA
 3613260 3613261 Pmen_0074 Pmen_0075     FALSE 0.117 99.000 0.000 NA   NA
 3613264 3613265 Pmen_0078 Pmen_0079     FALSE 0.140 165.000 0.019 NA   NA
 3613265 3613266 Pmen_0079 Pmen_0080     TRUE 0.935 11.000 0.140 NA   NA
 3613266 3613267 Pmen_0080 Pmen_0081     TRUE 0.531 20.000 0.000 NA   NA
 3613269 3613270 Pmen_0083 Pmen_0084     TRUE 0.891 41.000 0.037 0.032 Y NA
 3613270 3613271 Pmen_0084 Pmen_0085     FALSE 0.012 570.000 0.000 1.000 N NA
 3613272 3613273 Pmen_0086 Pmen_0087     TRUE 0.997 -7.000 0.524 NA Y NA
 3613273 3613274 Pmen_0087 Pmen_0088     FALSE 0.174 105.000 0.008 1.000 N NA
 3613274 3613275 Pmen_0088 Pmen_0089     FALSE 0.013 436.000 0.000 NA   NA
 3613275 3613276 Pmen_0089 Pmen_0090     FALSE 0.362 55.000 0.040 NA   NA
 3613276 3613277 Pmen_0090 Pmen_0091     TRUE 0.642 26.000 0.030 NA   NA
 3613277 3613278 Pmen_0091 Pmen_0092     TRUE 0.992 7.000 0.627 NA   NA
 3613278 3613279 Pmen_0092 Pmen_0093     TRUE 0.896 -10.000 0.034 NA   NA
 3613279 3613280 Pmen_0093 Pmen_0094     TRUE 0.790 -7.000 0.000 NA   NA
 3613280 3613281 Pmen_0094 Pmen_0095     FALSE 0.384 31.000 0.000 NA   NA
 3613281 3613282 Pmen_0095 Pmen_0096     TRUE 0.994 -36.000 0.863 NA   NA
 3613282 3613283 Pmen_0096 Pmen_0097     TRUE 0.943 12.000 0.196 NA   NA
 3613283 3613284 Pmen_0097 Pmen_0098     TRUE 0.971 -13.000 0.118 0.020 N NA
 3613284 3613285 Pmen_0098 Pmen_0099     FALSE 0.209 48.000 0.000 NA   NA
 3613285 3613286 Pmen_0099 Pmen_0100     TRUE 0.512 21.000 0.000 NA   NA
 3613286 3613287 Pmen_0100 Pmen_0101     TRUE 0.981 6.000 0.333 NA   NA
 3613287 3613288 Pmen_0101 Pmen_0102     TRUE 0.997 -3.000 1.000 NA   NA
 3613288 3613289 Pmen_0102 Pmen_0103     TRUE 0.996 3.000 0.833 NA   NA
 3613289 3613290 Pmen_0103 Pmen_0104     TRUE 0.989 -3.000 0.400 NA   NA
 3613290 3613291 Pmen_0104 Pmen_0105     TRUE 0.964 0.000 0.125 NA   NA
 3613291 3613292 Pmen_0105 Pmen_0106     TRUE 0.998 -3.000 0.625 1.000 Y NA
 3613292 3613293 Pmen_0106 Pmen_0107     TRUE 0.930 25.000 0.364 NA   NA
 3613293 3613294 Pmen_0107 Pmen_0108     FALSE 0.191 51.000 0.000 NA   NA
 3613294 3613295 Pmen_0108 Pmen_0109     TRUE 0.834 -3.000 0.000 NA   NA
 3613295 3613296 Pmen_0109 Pmen_0110     FALSE 0.126 79.000 0.000 NA   NA
 3613296 3613297 Pmen_0110 Pmen_0111     FALSE 0.110 128.000 0.000 NA   NA
 3613297 3613298 Pmen_0111 Pmen_0112     FALSE 0.121 84.000 0.000 NA   NA
 3613298 3613299 Pmen_0112 Pmen_0113     FALSE 0.053 197.000 0.000 NA   NA
 3613300 3613301 Pmen_0114 Pmen_0115     TRUE 0.552 19.000 0.000 NA   NA
 3613301 3613302 Pmen_0115 Pmen_0116     FALSE 0.418 89.000 0.130 NA   NA
 3613302 3613303 Pmen_0116 Pmen_0117     FALSE 0.154 66.000 0.000 1.000   NA
 3613303 3613304 Pmen_0117 Pmen_0118     FALSE 0.176 56.000 0.000 1.000 N NA
 3613304 3613305 Pmen_0118 Pmen_0119     TRUE 0.996 0.000 0.136 0.001 Y NA
 3613306 3613307 Pmen_0120 Pmen_0121     FALSE 0.179 105.000 0.012 NA   NA
 3613307 3613308 Pmen_0121 Pmen_0122     FALSE 0.125 80.000 0.000 NA   NA
 3613308 3613309 Pmen_0122 Pmen_0123     FALSE 0.010 601.000 0.000 NA N NA
 3613309 3613310 Pmen_0123 Pmen_0124     TRUE 0.656 64.000 0.286 NA N NA
 3613314 3613315 Pmen_0128 Pmen_0129 aspA   TRUE 0.664 129.000 0.353 1.000 N NA
 3613317 3613318 Pmen_0131 Pmen_0132     TRUE 0.704 20.000 0.019 1.000   NA
 3613318 3613319 Pmen_0132 Pmen_0133     TRUE 0.990 0.000 0.222 0.009   NA
 3613321 3613322 Pmen_0135 Pmen_0136     TRUE 0.607 162.000 0.095 1.000 Y NA
 3613322 3613323 Pmen_0136 Pmen_0137     TRUE 0.436 29.000 0.000 1.000   NA
 3613324 3613325 Pmen_0138 Pmen_0139     FALSE 0.118 72.000 0.000 NA N NA
 3613328 3613329 Pmen_0142 Pmen_0143     TRUE 0.999 5.000 0.741 0.004 Y NA
 3613329 3613330 Pmen_0143 Pmen_0144     TRUE 0.967 11.000 0.268 1.000 N NA
 3613330 3613331 Pmen_0144 Pmen_0145     TRUE 0.984 12.000 0.536 1.000 N NA
 3613333 3613334 Pmen_0147 Pmen_0148     TRUE 0.992 -25.000 0.722 NA   NA
 3613334 3613335 Pmen_0148 Pmen_0149     TRUE 0.826 37.000 0.255 NA   NA
 3613335 3613336 Pmen_0149 Pmen_0150     TRUE 0.982 19.000 0.321 1.000 Y NA
 3613336 3613337 Pmen_0150 Pmen_0151     FALSE 0.329 153.000 0.099 1.000   NA
 3613338 3613339 Pmen_0152 Pmen_0153     TRUE 0.921 16.000 0.204 NA   NA
 3613342 3613343 Pmen_0156 Pmen_0157     TRUE 0.799 49.000 0.000 0.013 Y NA
 3613343 3613344 Pmen_0157 Pmen_0158     FALSE 0.333 140.000 0.088 1.000 N NA
 3613344 3613345 Pmen_0158 Pmen_0159     TRUE 0.875 20.000 0.162 NA   NA
 3613346 3613347 Pmen_0160 Pmen_0161     TRUE 0.531 20.000 0.000 NA   NA
 3613350 3613351 Pmen_0164 Pmen_0165     TRUE 0.910 -3.000 0.025 NA N NA
 3613352 3613353 Pmen_0166 Pmen_0167     FALSE 0.114 114.000 0.000 NA   NA
 3613353 3613354 Pmen_0167 Pmen_0168     FALSE 0.341 35.000 0.000 NA   NA
 3613355 3613356 Pmen_0169 Pmen_0170     TRUE 0.993 0.000 0.208 1.000 Y NA
 3613356 3613357 Pmen_0170 Pmen_0171     TRUE 0.990 -3.000 0.416 1.000   NA
 3613357 3613358 Pmen_0171 Pmen_0172     TRUE 0.985 -6.000 0.353 1.000   NA
 3613358 3613359 Pmen_0172 Pmen_0173     FALSE 0.069 176.000 0.000 NA   NA
 3613359 3613360 Pmen_0173 Pmen_0174     TRUE 0.552 19.000 0.000 NA   NA
 3613361 3613362 Pmen_0175 Pmen_0176     TRUE 0.991 14.000 0.455 1.000 Y NA
 3613363 3613364 Pmen_0177 Pmen_0178     TRUE 0.500 66.000 0.167 NA   NA
 3613364 3613365 Pmen_0178 Pmen_0179     FALSE 0.010 904.000 0.000 NA   NA
 3613365 3613366 Pmen_0179 Pmen_0180     TRUE 0.538 166.000 0.211 0.092   NA
 3613366 3613367 Pmen_0180 Pmen_0181     TRUE 0.973 16.000 0.489 1.000   NA
 3613367 3613368 Pmen_0181 Pmen_0182     TRUE 0.962 67.000 0.511 0.001 Y NA
 3613368 3613369 Pmen_0182 Pmen_0183     TRUE 0.793 162.000 0.330 NA Y NA
 3613369 3613370 Pmen_0183 Pmen_0184     FALSE 0.198 136.000 0.027 NA N NA
 3613370 3613371 Pmen_0184 Pmen_0185     TRUE 0.679 148.000 0.412 1.000 N NA
 3613371 3613372 Pmen_0185 Pmen_0186     FALSE 0.019 356.000 0.000 1.000 N NA
 3613372 3613373 Pmen_0186 Pmen_0187     TRUE 0.999 0.000 0.865 0.005 Y NA
 3613373 3613374 Pmen_0187 Pmen_0188     TRUE 0.930 -16.000 0.081 1.000   NA
 3613374 3613375 Pmen_0188 Pmen_0189     TRUE 0.950 4.000 0.094 1.000   NA
 3613375 3613376 Pmen_0189 Pmen_0190     TRUE 0.902 28.000 0.296 1.000   NA
 3613376 3613377 Pmen_0190 Pmen_0191     TRUE 0.955 17.000 0.333 1.000   NA
 3613377 3613378 Pmen_0191 Pmen_0192     TRUE 0.992 2.000 0.500 1.000 N NA
 3613378 3613379 Pmen_0192 Pmen_0193     TRUE 0.999 -3.000 0.846 1.000 Y NA
 3613380 3613381 Pmen_0194 Pmen_0195     TRUE 0.997 -3.000 1.000 NA   NA
 3613381 3613382 Pmen_0195 Pmen_0196     FALSE 0.022 319.000 0.000 1.000 N NA
 3613382 3613383 Pmen_0196 Pmen_0197     FALSE 0.029 279.000 0.000 1.000 N NA
 3613383 3613384 Pmen_0197 Pmen_0198     TRUE 0.505 118.000 0.000 1.000 Y NA
 3613384 3613385 Pmen_0198 Pmen_0199     FALSE 0.253 228.000 0.000 1.000 Y NA
 3613385 3613386 Pmen_0199 Pmen_0200     FALSE 0.345 154.000 0.125 NA   NA
 3613386 3613387 Pmen_0200 Pmen_0201   glcF TRUE 0.596 37.000 0.057 NA   NA
 3613387 3613388 Pmen_0201 Pmen_0202 glcF glcE TRUE 0.991 4.000 0.074 0.066 Y NA
 3613388 3613389 Pmen_0202 Pmen_0203 glcE   TRUE 0.993 0.000 0.070 0.017 Y NA
 3613392 3613393 Pmen_0206 Pmen_0207   flgC TRUE 0.999 3.000 0.972 0.007 Y NA
 3613393 3613394 Pmen_0207 Pmen_0208 flgC flgD TRUE 0.999 0.000 0.914 NA Y NA
 3613394 3613395 Pmen_0208 Pmen_0209 flgD   TRUE 0.989 37.000 0.970 NA Y NA
 3613395 3613396 Pmen_0209 Pmen_0210     TRUE 0.999 10.000 1.000 0.007 Y NA
 3613396 3613397 Pmen_0210 Pmen_0211     TRUE 0.959 196.000 0.971 0.002 Y NA
 3613397 3613398 Pmen_0211 Pmen_0212   flgH TRUE 0.999 6.000 0.941 0.011 Y NA
 3613398 3613399 Pmen_0212 Pmen_0213 flgH flgI TRUE 0.999 10.000 0.912 0.014 Y NA
 3613399 3613400 Pmen_0213 Pmen_0214 flgI   TRUE 0.977 4.000 0.025 NA Y NA
 3613400 3613401 Pmen_0214 Pmen_0215     TRUE 0.977 4.000 0.025 NA Y NA
 3613401 3613402 Pmen_0215 Pmen_0216   flgL TRUE 0.994 24.000 0.576 0.002 Y NA
 3613402 3613403 Pmen_0216 Pmen_0217 flgL   TRUE 0.987 13.000 0.667 NA   NA
 3613404 3613405 Pmen_0218 Pmen_0219     FALSE 0.039 233.000 0.000 NA   NA
 3613405 3613406 Pmen_0219 Pmen_0220     FALSE 0.102 143.000 0.000 NA   NA
 3613406 3613407 Pmen_0220 Pmen_0221     TRUE 0.542 18.000 0.000 NA N NA
 3613407 3613408 Pmen_0221 Pmen_0222     FALSE 0.116 128.000 0.000 1.000 N NA
 3613408 3613409 Pmen_0222 Pmen_0223     FALSE 0.106 136.000 0.000 NA   NA
 3613409 3613410 Pmen_0223 Pmen_0224     TRUE 0.512 21.000 0.000 NA   NA
 3613411 3613412 Pmen_0225 Pmen_0226     FALSE 0.105 106.000 0.000 NA N NA
 3613412 3613413 Pmen_0226 Pmen_0227     FALSE 0.031 248.000 0.000 NA N NA
 3613415 3613416 Pmen_0229 Pmen_0230     FALSE 0.119 88.000 0.000 NA   NA
 3613418 3613419 Pmen_0231 Pmen_0232 gabD   TRUE 0.633 98.000 0.303 1.000 N NA
 3613419 3613420 Pmen_0232 Pmen_0233     FALSE 0.035 264.000 0.000 1.000   NA
 3613420 3613421 Pmen_0233 Pmen_0234     FALSE 0.134 93.000 0.000 1.000   NA
 3613421 3613422 Pmen_0234 Pmen_0235     TRUE 0.990 -3.000 0.400 1.000   NA
 3613424 3613425 Pmen_0237 Pmen_0238     FALSE 0.221 306.000 0.292 1.000 N NA
 3613425 3613426 Pmen_0238 Pmen_0239     FALSE 0.288 88.000 0.000 0.076 N NA
 3613432 3613433 Pmen_0245 Pmen_0246     TRUE 0.628 38.000 0.088 NA N NA
 3613433 3613434 Pmen_0246 Pmen_0247   dadX FALSE 0.283 144.000 0.070 NA N NA
 3613434 3613435 Pmen_0247 Pmen_0248 dadX   FALSE 0.278 104.000 0.046 1.000 N NA
 3613435 3613436 Pmen_0248 Pmen_0249     FALSE 0.297 123.000 0.057 1.000 N NA
 3613436 3613437 Pmen_0249 Pmen_0250     FALSE 0.220 413.000 0.123 1.000 Y NA
 3613438 3613439 Pmen_0251 Pmen_0252     FALSE 0.159 135.000 0.009 NA   NA
 3613439 3613440 Pmen_0252 Pmen_0253     FALSE 0.067 179.000 0.000 NA   NA
 3613444 3613445 Pmen_0257 Pmen_0258     TRUE 0.659 35.000 0.074 NA   NA
 3613446 3613447 Pmen_0259 Pmen_0260     FALSE 0.103 330.000 0.139 1.000 N NA
 3613447 3613448 Pmen_0260 Pmen_0261     FALSE 0.169 99.000 0.007 NA   NA
 3613448 3613449 Pmen_0261 Pmen_0262     FALSE 0.214 78.000 0.018 NA   NA
 3613450 3613451 Pmen_0263 Pmen_0264   xerC TRUE 0.989 -3.000 0.367 1.000   NA
 3613451 3613452 Pmen_0264 Pmen_0265 xerC   TRUE 0.986 15.000 0.714 NA   NA
 3613452 3613453 Pmen_0265 Pmen_0266   dapF TRUE 0.971 -3.000 0.175 NA   NA
 3613453 3613454 Pmen_0266 Pmen_0267 dapF   TRUE 0.990 11.000 0.104 0.002 Y NA
 3613455 3613456 Pmen_0268 Pmen_0269   cyaY FALSE 0.119 70.000 0.000 NA N NA
 3613456 3613457 Pmen_0269 Pmen_0270 cyaY   TRUE 0.879 -10.000 0.025 NA   NA
 3613457 3613458 Pmen_0270 Pmen_0271     FALSE 0.288 118.000 0.054 NA   NA
 3613458 3613459 Pmen_0271 Pmen_0272     FALSE 0.175 59.000 0.000 1.000   NA
 3613460 3613461 Pmen_0273 Pmen_0274 cyaA   TRUE 0.457 121.000 0.164 1.000   NA
 3613461 3613462 Pmen_0274 Pmen_0275     TRUE 0.525 75.000 0.200 NA   NA
 3613462 3613463 Pmen_0275 Pmen_0276     TRUE 0.754 -19.000 0.000 NA   NA
 3613463 3613464 Pmen_0276 Pmen_0277     FALSE 0.183 53.000 0.000 NA   NA
 3613465 3613466 Pmen_0278 Pmen_0279     TRUE 0.999 -3.000 0.775 0.032 Y NA
 3613466 3613467 Pmen_0279 Pmen_0280   hemC FALSE 0.254 85.000 0.032 1.000 N NA
 3613467 3613468 Pmen_0280 Pmen_0281 hemC   TRUE 0.996 -3.000 0.205 0.002 Y NA
 3613468 3613469 Pmen_0281 Pmen_0282     TRUE 0.995 13.000 0.600 1.000 Y NA
 3613469 3613470 Pmen_0282 Pmen_0283     TRUE 0.999 -3.000 0.765 1.000 Y NA
 3613470 3613471 Pmen_0283 Pmen_0284     FALSE 0.229 153.000 0.042 1.000 N NA
 3613471 3613472 Pmen_0284 Pmen_0285     FALSE 0.111 310.000 0.133 1.000 N NA
 3613476 3613477 Pmen_0289 Pmen_0290     TRUE 0.961 0.000 0.108 NA   NA
 3613477 3613478 Pmen_0290 Pmen_0291     TRUE 0.663 35.000 0.075 NA   NA
 3613478 3613479 Pmen_0291 Pmen_0292     FALSE 0.208 129.000 0.024 1.000 N NA
 3613479 3613480 Pmen_0292 Pmen_0293     FALSE 0.112 123.000 0.000 NA   NA
 3613480 3613481 Pmen_0293 Pmen_0294     FALSE 0.147 62.000 0.000 NA   NA
 3613482 3613483 Pmen_0295 Pmen_0296     FALSE 0.299 231.000 0.021 NA Y NA
 3613486 3613487 Pmen_0299 Pmen_0300     TRUE 0.743 20.000 0.033 1.000 N NA
 3613488 3613489 Pmen_0301 Pmen_0302     TRUE 0.518 87.000 0.000 1.000 Y NA
 3613489 3613490 Pmen_0302 Pmen_0303     TRUE 0.842 -3.000 0.000 1.000 N NA
 3613490 3613491 Pmen_0303 Pmen_0304     TRUE 0.994 -13.000 0.340 1.000 Y NA
 3613491 3613492 Pmen_0304 Pmen_0305     TRUE 0.999 0.000 0.513 0.014 Y NA
 3613492 3613493 Pmen_0305 Pmen_0306     TRUE 0.977 20.000 0.179 0.069 Y NA
 3613494 3613495 Pmen_0307 Pmen_0308     FALSE 0.182 110.000 0.008 1.000   NA
 3613495 3613496 Pmen_0308 Pmen_0309   rho FALSE 0.152 233.000 0.087 1.000   NA
 3613496 3613497 Pmen_0309 Pmen_0310 rho   FALSE 0.066 250.000 0.025 NA N NA
 3613497 3613498 Pmen_0310 Pmen_0311     TRUE 0.932 0.000 0.042 NA N NA
 3613498 3613499 Pmen_0311 Pmen_0312     FALSE 0.025 290.000 0.000 NA   NA
 3613502 3613503 Pmen_0315 Pmen_0316     TRUE 0.987 0.000 0.161 0.005   NA
 3613503 3613504 Pmen_0316 Pmen_0317     TRUE 0.852 -3.000 0.000 1.000   NA
 3613504 3613505 Pmen_0317 Pmen_0318     FALSE 0.124 94.000 0.000 1.000 N NA
 3613505 3613506 Pmen_0318 Pmen_0319     FALSE 0.187 52.000 0.000 NA   NA
 3613508 3613509 Pmen_0321 Pmen_0322     FALSE 0.055 301.000 0.034 NA   NA
 3613509 3613510 Pmen_0322 Pmen_0323     TRUE 0.940 -3.000 0.053 NA   NA
 3613511 3613512 Pmen_0324 Pmen_0325     TRUE 0.946 19.000 0.329 NA   NA
 3613512 3613513 Pmen_0325 Pmen_0326     TRUE 0.986 5.000 0.396 1.000 N NA
 3613513 3613514 Pmen_0326 Pmen_0327     TRUE 0.827 103.000 0.083 0.001 Y NA
 3613514 3613515 Pmen_0327 Pmen_0328     FALSE 0.275 40.000 0.000 NA   NA
 3613515 3613516 Pmen_0328 Pmen_0329     FALSE 0.114 108.000 0.000 NA   NA
 3613516 3613517 Pmen_0329 Pmen_0330     FALSE 0.089 156.000 0.000 NA   NA
 3613517 3613518 Pmen_0330 Pmen_0331   gcvT FALSE 0.089 312.000 0.017 0.069 N NA
 3613518 3613519 Pmen_0331 Pmen_0332 gcvT   TRUE 0.918 95.000 0.317 0.004 Y NA
 3613519 3613520 Pmen_0332 Pmen_0333     FALSE 0.105 147.000 0.000 1.000 N NA
 3613520 3613521 Pmen_0333 Pmen_0334     TRUE 0.952 -3.000 0.079 NA   NA
 3613521 3613522 Pmen_0334 Pmen_0335     TRUE 0.971 3.000 0.200 NA   NA
 3613522 3613523 Pmen_0335 Pmen_0336     TRUE 0.616 15.000 0.000 NA   NA
 3613524 3613525 Pmen_0337 Pmen_0338     FALSE 0.391 70.000 0.084 1.000   NA
 3613525 3613526 Pmen_0338 Pmen_0339     FALSE 0.075 264.000 0.032 1.000   NA
 3613526 3613527 Pmen_0339 Pmen_0340     FALSE 0.411 72.000 0.105 1.000 N NA
 3613527 3613528 Pmen_0340 Pmen_0341     FALSE 0.367 177.000 0.000 1.000 Y NA
 3613529 3613530 Pmen_0342 Pmen_0343     TRUE 0.571 84.000 0.239 1.000 N NA
 3613530 3613531 Pmen_0343 Pmen_0344     FALSE 0.114 132.000 0.000 1.000 N NA
 3613531 3613532 Pmen_0344 Pmen_0345     TRUE 0.694 68.000 0.000 0.027 Y NA
 3613532 3613533 Pmen_0345 Pmen_0346     TRUE 0.694 68.000 0.000 0.027 Y NA
 3613533 3613534 Pmen_0346 Pmen_0347     TRUE 0.899 54.000 0.300 1.000 Y NA
 3613534 3613535 Pmen_0347 Pmen_0348     TRUE 0.987 -3.000 0.071 1.000 Y NA
 3613535 3613536 Pmen_0348 Pmen_0349     TRUE 0.998 -3.000 0.528 0.069 Y NA
 3613538 3613539 Pmen_0351 Pmen_0352     TRUE 0.987 39.000 0.937 NA Y NA
 3613539 3613540 Pmen_0352 Pmen_0353     FALSE 0.315 68.000 0.048 1.000 N NA
 3613540 3613541 Pmen_0353 Pmen_0354     TRUE 0.826 64.000 0.051 0.003 Y NA
 3613542 3613543 Pmen_0355 Pmen_0356     FALSE 0.159 168.000 0.030 NA   NA
 3613543 3613544 Pmen_0356 Pmen_0357     FALSE 0.242 104.000 0.036 NA N NA
 3613544 3613545 Pmen_0357 Pmen_0358     TRUE 0.925 -3.000 0.036 NA N NA
 3613546 3613547 Pmen_0359 Pmen_0360 ompR   TRUE 0.932 77.000 0.584 1.000 Y NA
 3613547 3613548 Pmen_0360 Pmen_0361     TRUE 0.724 103.000 0.022 0.018 Y NA
 3613549 3613550 Pmen_0362 Pmen_0363     TRUE 0.976 -3.000 0.214 NA N NA
 3613550 3613551 Pmen_0363 Pmen_0364     TRUE 0.959 -3.000 0.102 1.000 N NA
 3613554 3613555 Pmen_0367 Pmen_0368 hslO   FALSE 0.222 158.000 0.048 1.000 N NA
 3613555 3613556 Pmen_0368 Pmen_0369     FALSE 0.129 159.000 0.004 1.000   NA
 3613557 3613558 Pmen_0370 Pmen_0371     TRUE 0.975 -3.000 0.201 NA   NA
 3613558 3613559 Pmen_0371 Pmen_0372     TRUE 0.998 1.000 0.650 NA Y NA
 3613559 3613560 Pmen_0372 Pmen_0373     TRUE 0.997 -3.000 0.491 NA Y NA
 3613561 3613562 Pmen_0374 Pmen_0375     FALSE 0.116 100.000 0.000 NA   NA
 3613562 3613563 Pmen_0375 Pmen_0376     FALSE 0.037 240.000 0.000 NA   NA
 3613563 3613564 Pmen_0376 Pmen_0377     TRUE 0.997 2.000 0.500 NA Y NA
 3613566 3613567 Pmen_0379 Pmen_0380     TRUE 0.997 -3.000 0.500 1.000 Y NA
 3613567 3613568 Pmen_0380 Pmen_0381     FALSE 0.343 139.000 0.094 1.000 N NA
 3613568 3613569 Pmen_0381 Pmen_0382     TRUE 0.496 98.000 0.185 1.000   NA
 3613569 3613570 Pmen_0382 Pmen_0383     FALSE 0.143 64.000 0.000 NA   NA
 3613570 3613571 Pmen_0383 Pmen_0384     TRUE 0.993 -3.000 0.556 NA   NA
 3613572 3613573 Pmen_0385 Pmen_0386     FALSE 0.122 132.000 0.000 1.000   NA
 3613574 3613575 Pmen_0387 Pmen_0388     TRUE 0.999 -3.000 0.870 0.010 Y NA
 3613575 3613576 Pmen_0388 Pmen_0389     TRUE 0.972 16.000 0.466 1.000   NA
 3613576 3613577 Pmen_0389 Pmen_0390     TRUE 0.651 149.000 0.175 0.001   NA
 3613577 3613578 Pmen_0390 Pmen_0391     FALSE 0.219 201.000 0.000 0.001   NA
 3613580 3613581 Pmen_0393 Pmen_0394 nudE   TRUE 0.989 -3.000 0.373 1.000   NA
 3613582 3613583 Pmen_0395 Pmen_0396   pyrC FALSE 0.033 257.000 0.000 1.000 N NA
 3613583 3613584 Pmen_0396 Pmen_0397 pyrC pyrB TRUE 0.997 0.000 0.452 1.000 Y NA
 3613584 3613585 Pmen_0397 Pmen_0398 pyrB   TRUE 0.987 12.000 0.247 1.000 Y NA
 3613585 3613586 Pmen_0398 Pmen_0399     FALSE 0.349 147.000 0.109 1.000 N NA
 3613586 3613587 Pmen_0399 Pmen_0400     TRUE 0.982 0.000 0.263 NA N NA
 3613587 3613588 Pmen_0400 Pmen_0401     FALSE 0.376 59.000 0.064 NA N NA
 3613588 3613589 Pmen_0401 Pmen_0402     FALSE 0.367 89.000 0.089 1.000 N NA
 3613590 3613591 Pmen_0403 Pmen_0404     TRUE 0.950 47.000 0.296 0.024 Y NA
 3613591 3613592 Pmen_0404 Pmen_0405     TRUE 0.912 46.000 0.266 1.000 Y NA
 3613592 3613593 Pmen_0405 Pmen_0406     TRUE 0.973 85.000 0.795 0.014 Y NA
 3613593 3613594 Pmen_0406 Pmen_0407     TRUE 0.850 61.000 0.241 1.000 Y NA
 3613594 3613595 Pmen_0407 Pmen_0408     TRUE 0.987 11.000 0.217 1.000 Y NA
 3613595 3613596 Pmen_0408 Pmen_0409     TRUE 0.996 -3.000 0.217 0.018 Y NA
 3613596 3613597 Pmen_0409 Pmen_0410     TRUE 0.992 11.000 0.517 0.014   NA
 3613598 3613599 Pmen_0411 Pmen_0412     FALSE 0.049 208.000 0.000 NA   NA
 3613599 3613600 Pmen_0412 Pmen_0413     FALSE 0.251 130.000 0.041 NA   NA
 3613600 3613601 Pmen_0413 Pmen_0414     FALSE 0.084 164.000 0.000 1.000 N NA
 3613601 3613602 Pmen_0414 Pmen_0415     TRUE 0.539 71.000 0.000 1.000 Y NA
 3613602 3613603 Pmen_0415 Pmen_0416     TRUE 0.898 42.000 0.500 1.000 N NA
 3613604 3613605 Pmen_0417 Pmen_0418     FALSE 0.124 98.000 0.000 1.000 N NA
 3613605 3613606 Pmen_0418 Pmen_0419     TRUE 0.881 59.000 0.676 NA   NA
 3613607 3613608 Pmen_0420 Pmen_0421     FALSE 0.063 188.000 0.000 1.000 N NA
 3613608 3613609 Pmen_0421 Pmen_0422     FALSE 0.183 53.000 0.000 NA   NA
 3613609 3613610 Pmen_0422 Pmen_0423     FALSE 0.117 99.000 0.000 NA   NA
 3613610 3613611 Pmen_0423 Pmen_0424     TRUE 0.961 -30.000 0.214 NA   NA
 3613612 3613613 Pmen_0425 Pmen_0426     FALSE 0.114 370.000 0.000 NA Y NA
 3613613 3613614 Pmen_0426 Pmen_0427     FALSE 0.124 352.000 0.000 NA Y NA
 3613614 3613615 Pmen_0427 Pmen_0428     FALSE 0.090 155.000 0.000 NA   NA
 3613615 3613616 Pmen_0428 Pmen_0429     FALSE 0.031 260.000 0.000 NA   NA
 3613616 3613617 Pmen_0429 Pmen_0430     FALSE 0.219 50.000 0.000 1.000   NA
 3613618 3613619 Pmen_0431 Pmen_0432     TRUE 0.531 20.000 0.000 NA   NA
 3613621 3613622 Pmen_0434 Pmen_0435     TRUE 0.531 20.000 0.000 NA   NA
 3613622 3613623 Pmen_0435 Pmen_0436     FALSE 0.033 254.000 0.000 NA   NA
 3613623 3613624 Pmen_0436 Pmen_0437     FALSE 0.121 102.000 0.000 1.000 N NA
 3613624 3613625 Pmen_0437 Pmen_0438     FALSE 0.127 74.000 0.000 NA   NA
 3613625 3613626 Pmen_0438 Pmen_0439     TRUE 0.745 -1850.000 0.000 NA   NA
 3613626 3613627 Pmen_0439 Pmen_0440     FALSE 0.011 1274.000 0.000 1.000 N NA
 3613627 3613628 Pmen_0440 Pmen_0441     TRUE 0.785 47.000 0.045 1.000 Y NA
 3613628 3613629 Pmen_0441 Pmen_0442     TRUE 0.887 36.000 0.000 0.010 Y NA
 3613629 3613630 Pmen_0442 Pmen_0443     FALSE 0.051 217.000 0.000 1.000   NA
 3613632 3613633 Pmen_0445 Pmen_0446     TRUE 0.790 -7.000 0.000 NA   NA
 3613633 3613634 Pmen_0446 Pmen_0447     FALSE 0.114 117.000 0.000 NA   NA
 3613634 3613635 Pmen_0447 Pmen_0448     FALSE 0.217 47.000 0.000 NA   NA
 3613635 3613636 Pmen_0448 Pmen_0449     FALSE 0.317 91.000 0.061 1.000 N NA
 3613637 3613638 Pmen_0450 Pmen_0451     FALSE 0.274 157.000 0.080 NA   NA
 3613639 3613640 Pmen_0452 Pmen_0453   ligB FALSE 0.351 84.000 0.079 NA   NA
 3613640 3613641 Pmen_0453 Pmen_0454 ligB   FALSE 0.149 141.000 0.004 1.000 N NA
 3613641 3613642 Pmen_0454 Pmen_0455     TRUE 0.930 -3.000 0.036 1.000 N NA
 3613642 3613643 Pmen_0455 Pmen_0456     FALSE 0.301 73.000 0.000 0.081 N NA
 3613644 3613645 Pmen_0457 Pmen_0458     FALSE 0.120 113.000 0.000 1.000 N NA
 3613645 3613646 Pmen_0458 Pmen_0459     TRUE 0.826 126.000 0.285 1.000 Y NA
 3613646 3613647 Pmen_0459 Pmen_0460   pgk TRUE 0.992 5.000 0.070 0.004 Y NA
 3613647 3613648 Pmen_0460 Pmen_0461 pgk   FALSE 0.018 354.000 0.000 NA   NA
 3613648 3613649 Pmen_0461 Pmen_0462     FALSE 0.350 98.000 0.084 NA   NA
 3613651 3613652 Pmen_0464 Pmen_0465     TRUE 0.958 14.000 0.308 NA   NA
 3613652 3613653 Pmen_0465 Pmen_0466     FALSE 0.267 56.000 0.016 NA   NA
 3613654 3613655 Pmen_0467 Pmen_0468     FALSE 0.145 63.000 0.000 NA   NA
 3613655 3613656 Pmen_0468 Pmen_0469     FALSE 0.166 62.000 0.000 1.000   NA
 3613656 3613657 Pmen_0469 Pmen_0470     FALSE 0.134 67.000 0.000 NA   NA
 3613658 3613659 Pmen_0471 Pmen_0472     TRUE 0.996 0.000 0.330 NA Y NA
 3613659 3613660 Pmen_0472 Pmen_0473     FALSE 0.152 108.000 0.006 NA N NA
 3613660 3613661 Pmen_0473 Pmen_0474     FALSE 0.106 146.000 0.000 1.000 N NA
 3613662 3613663 Pmen_0475 Pmen_0476     FALSE 0.079 176.000 0.000 1.000   NA
 3613665 3613666 Pmen_0478 Pmen_0479     FALSE 0.378 41.000 0.010 1.000 N NA
 3613666 3613667 Pmen_0479 Pmen_0480     FALSE 0.373 50.000 0.029 1.000   NA
 3613667 3613668 Pmen_0480 Pmen_0481     FALSE 0.193 119.000 0.012 1.000   NA
 3613668 3613669 Pmen_0481 Pmen_0482     TRUE 0.839 80.000 0.634 1.000 N NA
 3613669 3613670 Pmen_0482 Pmen_0483     FALSE 0.332 312.000 0.459 1.000 N NA
 3613670 3613671 Pmen_0483 Pmen_0484     FALSE 0.065 185.000 0.000 1.000 N NA
 3613671 3613672 Pmen_0484 Pmen_0485     TRUE 0.464 197.000 0.000 0.016 Y NA
 3613672 3613673 Pmen_0485 Pmen_0486     TRUE 0.952 28.000 0.095 0.068 Y NA
 3613673 3613674 Pmen_0486 Pmen_0487     TRUE 0.993 -7.000 0.288 1.000 Y NA
 3613674 3613675 Pmen_0487 Pmen_0488     FALSE 0.076 965.000 0.000 1.000 Y NA
 3613676 3613677 Pmen_0489 Pmen_0490     FALSE 0.021 313.000 0.000 NA   NA
 3613678 3613679 Pmen_0491 Pmen_0492     TRUE 0.690 26.000 0.045 NA   NA
 3613679 3613680 Pmen_0492 Pmen_0493     TRUE 0.976 63.000 0.776 0.022 Y NA
 3613680 3613681 Pmen_0493 Pmen_0494     TRUE 0.988 38.000 0.667 0.022 Y NA
 3613681 3613682 Pmen_0494 Pmen_0495     TRUE 0.937 153.000 0.574 0.064 Y NA
 3613682 3613683 Pmen_0495 Pmen_0496     TRUE 0.902 99.000 0.912 1.000   NA
 3613683 3613684 Pmen_0496 Pmen_0497     TRUE 0.886 131.000 0.868 1.000   NA
 3613684 3613685 Pmen_0497 Pmen_0498     FALSE 0.063 188.000 0.000 1.000 N NA
 3613686 3613687 Pmen_0499 Pmen_0500     FALSE 0.245 102.000 0.029 1.000   NA
 3613687 3613688 Pmen_0500 Pmen_0501     TRUE 0.809 134.000 0.608 1.000   NA
 3613688 3613689 Pmen_0501 Pmen_0502     TRUE 0.715 109.000 0.419 NA   NA
 3613689 3613690 Pmen_0502 Pmen_0503     FALSE 0.365 90.000 0.091 NA   NA
 3613692 3613693 Pmen_0505 Pmen_0506     TRUE 0.983 -3.000 0.283 NA   NA
 3613693 3613694 Pmen_0506 Pmen_0507     FALSE 0.052 198.000 0.000 NA   NA
 3613694 3613695 Pmen_0507 Pmen_0508     FALSE 0.274 63.000 0.026 1.000 N NA
 3613695 3613696 Pmen_0508 Pmen_0509     TRUE 0.952 4.000 0.103 1.000   NA
 3613696 3613697 Pmen_0509 Pmen_0510     TRUE 0.436 73.000 0.119 1.000   NA
 3613697 3613698 Pmen_0510 Pmen_0511     TRUE 0.954 13.000 0.250 1.000   NA
 3613700 3613701 Pmen_0513 Pmen_0514     TRUE 0.966 -3.000 0.026 0.044   NA
 3613702 3613703 Pmen_0515 Pmen_0516     TRUE 0.950 -3.000 0.076 NA   NA
 3613703 3613704 Pmen_0516 Pmen_0517     TRUE 0.995 -3.000 0.314 NA Y NA
 3613704 3613705 Pmen_0517 Pmen_0518     TRUE 0.988 4.000 0.015 0.009 Y NA
 3613705 3613706 Pmen_0518 Pmen_0519   hisE TRUE 0.595 23.000 0.007 1.000 N NA
 3613706 3613707 Pmen_0519 Pmen_0520 hisE hisI TRUE 0.994 -7.000 0.152 0.004 Y NA
 3613707 3613708 Pmen_0520 Pmen_0521 hisI   FALSE 0.234 71.000 0.018 1.000   NA
 3613708 3613709 Pmen_0521 Pmen_0522     TRUE 0.991 -3.000 0.432 1.000   NA
 3613709 3613710 Pmen_0522 Pmen_0523   ubiE TRUE 0.969 0.000 0.145 1.000   NA
 3613711 3613712 Pmen_0524 Pmen_0525     FALSE 0.329 172.000 0.167 NA   NA
 3613712 3613713 Pmen_0525 Pmen_0526     TRUE 0.990 11.000 0.667 NA   NA
 3613714 3613715 Pmen_0527 Pmen_0528     TRUE 0.436 71.000 0.123 1.000 N NA
 3613715 3613716 Pmen_0528 Pmen_0529     FALSE 0.207 209.000 0.119 1.000 N NA
 3613716 3613717 Pmen_0529 Pmen_0530     FALSE 0.430 154.000 0.190 1.000 N NA
 3613717 3613718 Pmen_0530 Pmen_0531     FALSE 0.015 390.000 0.000 NA   NA
 3613718 3613719 Pmen_0531 Pmen_0532   hslU FALSE 0.338 82.000 0.070 NA   NA
 3613719 3613720 Pmen_0532 Pmen_0533 hslU   TRUE 0.982 40.000 0.752 1.000 Y NA
 3613720 3613721 Pmen_0533 Pmen_0534     FALSE 0.394 97.000 0.122 NA N NA
 3613721 3613722 Pmen_0534 Pmen_0535   argS TRUE 0.935 1.000 0.052 NA N NA
 3613722 3613723 Pmen_0535 Pmen_0536 argS   FALSE 0.172 172.000 0.036 1.000 N NA
 3613724 3613725 Pmen_0537 Pmen_0538     TRUE 0.525 27.000 0.004 1.000 N NA
 3613725 3613726 Pmen_0538 Pmen_0539     TRUE 0.852 -3.000 0.000 1.000   NA
 3613726 3613727 Pmen_0539 Pmen_0540     FALSE 0.291 105.000 0.048 1.000   NA
 3613729 3613730 Pmen_0542 Pmen_0543     TRUE 0.998 0.000 0.616 NA Y NA
 3613730 3613731 Pmen_0543 Pmen_0544     TRUE 0.999 -3.000 0.770 NA Y NA
 3613731 3613732 Pmen_0544 Pmen_0545     TRUE 0.998 -3.000 0.680 NA Y NA
 3613732 3613733 Pmen_0545 Pmen_0546     TRUE 0.958 56.000 0.668 NA Y NA
 3613733 3613734 Pmen_0546 Pmen_0547   aroK TRUE 0.891 33.000 0.319 1.000 N NA
 3613734 3613735 Pmen_0547 Pmen_0548 aroK aroB TRUE 0.675 176.000 0.208 1.000 Y NA
 3613735 3613736 Pmen_0548 Pmen_0549 aroB   TRUE 0.847 11.000 0.020 1.000   NA
 3613736 3613737 Pmen_0549 Pmen_0550   gltB FALSE 0.101 238.000 0.037 1.000   NA
 3613737 3613738 Pmen_0550 Pmen_0551 gltB gltD TRUE 0.969 35.000 0.214 0.001 Y NA
 3613738 3613739 Pmen_0551 Pmen_0552 gltD hemE FALSE 0.217 119.000 0.024 1.000 N NA
 3613739 3613740 Pmen_0552 Pmen_0553 hemE   FALSE 0.114 131.000 0.000 1.000 N NA
 3613741 3613742 Pmen_0554 Pmen_0555     TRUE 0.435 124.000 0.167 NA N NA
 3613742 3613743 Pmen_0555 Pmen_0556     FALSE 0.040 222.000 0.000 NA N NA
 3613743 3613744 Pmen_0556 Pmen_0557     FALSE 0.164 59.000 0.000 1.000 N NA
 3613744 3613745 Pmen_0557 Pmen_0558     FALSE 0.024 291.000 0.000 NA   NA
 3613745 3613746 Pmen_0558 Pmen_0559     TRUE 0.833 12.000 0.028 NA   NA
 3613746 3613747 Pmen_0559 Pmen_0560     TRUE 0.687 102.000 0.379 NA N NA
 3613747 3613748 Pmen_0560 Pmen_0561     FALSE 0.207 163.000 0.046 1.000 N NA
 3613748 3613749 Pmen_0561 Pmen_0562     FALSE 0.386 57.000 0.000 0.067   NA
 3613750 3613751 Pmen_0563 Pmen_0564     TRUE 0.991 -7.000 0.103 0.051 Y NA
 3613751 3613752 Pmen_0564 Pmen_0565     TRUE 0.790 -7.000 0.000 NA   NA
 3613752 3613753 Pmen_0565 Pmen_0566     TRUE 0.986 -3.000 0.317 NA   NA
 3613753 3613754 Pmen_0566 Pmen_0567     TRUE 0.881 9.000 0.025 1.000   NA
 3613754 3613755 Pmen_0567 Pmen_0568     TRUE 0.995 1.000 0.681 NA   NA
 3613755 3613756 Pmen_0568 Pmen_0569     FALSE 0.115 103.000 0.000 NA   NA
 3613757 3613758 Pmen_0570 Pmen_0571     TRUE 0.912 84.000 1.000 NA   NA
 3613758 3613759 Pmen_0571 Pmen_0572     FALSE 0.180 74.000 0.006 NA   NA
 3613759 3613760 Pmen_0572 Pmen_0573     FALSE 0.363 52.000 0.032 1.000 N NA
 3613762 3613763 Pmen_0575 Pmen_0576 aceF aceE TRUE 0.981 12.000 0.167 1.000 Y NA
 3613764 3613765 Pmen_0577 Pmen_0578     FALSE 0.400 64.000 0.078 1.000 N NA
 3613765 3613766 Pmen_0578 Pmen_0579     FALSE 0.314 61.000 0.034 1.000 N NA
 3613766 3613767 Pmen_0579 Pmen_0580     TRUE 0.996 2.000 0.205 0.001 Y NA
 3613767 3613768 Pmen_0580 Pmen_0581     TRUE 0.988 10.000 0.217 1.000 Y NA
 3613768 3613769 Pmen_0581 Pmen_0582     TRUE 0.973 6.000 0.241 1.000   NA
 3613769 3613770 Pmen_0582 Pmen_0583     TRUE 0.986 0.000 0.133 0.002   NA
 3613770 3613771 Pmen_0583 Pmen_0584     TRUE 0.986 -3.000 0.133 0.002   NA
 3613771 3613772 Pmen_0584 Pmen_0585     TRUE 0.984 0.000 0.095 0.002   NA
 3613772 3613773 Pmen_0585 Pmen_0586     TRUE 0.881 13.000 0.067 1.000   NA
 3613773 3613774 Pmen_0586 Pmen_0587     TRUE 0.991 -13.000 0.409 0.016 N NA
 3613774 3613775 Pmen_0587 Pmen_0588     TRUE 0.704 37.000 0.125 NA   NA
 3613775 3613776 Pmen_0588 Pmen_0589     TRUE 0.959 3.000 0.125 NA   NA
 3613776 3613777 Pmen_0589 Pmen_0590     TRUE 0.946 -3.000 0.068 NA   NA
 3613777 3613778 Pmen_0590 Pmen_0591     TRUE 0.948 3.000 0.085 NA   NA
 3613780 3613781 Pmen_0594 Pmen_0595     TRUE 0.906 0.000 0.017 NA   NA
 3613781 3613782 Pmen_0595 Pmen_0596     TRUE 0.964 5.000 0.188 NA   NA
 3613782 3613783 Pmen_0596 Pmen_0597     FALSE 0.147 62.000 0.000 NA   NA
 3613783 3613784 Pmen_0597 Pmen_0598     FALSE 0.141 151.000 0.006 1.000 N NA
 3613784 3613785 Pmen_0598 Pmen_0599     TRUE 0.997 14.000 0.604 0.007 Y NA
 3613786 3613787 Pmen_0600 Pmen_0601     FALSE 0.116 172.000 0.012 NA   NA
 3613787 3613788 Pmen_0601 Pmen_0602     TRUE 0.869 8.000 0.016 1.000   NA
 3613788 3613789 Pmen_0602 Pmen_0603     TRUE 0.954 -3.000 0.086 NA   NA
 3613789 3613790 Pmen_0603 Pmen_0604     TRUE 0.908 0.000 0.019 NA   NA
 3613790 3613791 Pmen_0604 Pmen_0605     TRUE 0.927 16.000 0.217 NA   NA
 3613791 3613792 Pmen_0605 Pmen_0606     TRUE 0.718 113.000 0.427 NA   NA
 3613792 3613793 Pmen_0606 Pmen_0607     TRUE 0.689 147.000 0.433 NA   NA
 3613793 3613794 Pmen_0607 Pmen_0608     TRUE 0.990 -3.000 0.443 NA   NA
 3613794 3613795 Pmen_0608 Pmen_0609     FALSE 0.202 104.000 0.015 1.000   NA
 3613797 3613798 Pmen_0611 Pmen_0612     FALSE 0.425 44.000 0.028 1.000 N NA
 3613799 3613800 Pmen_0613 Pmen_0614     TRUE 0.754 64.000 0.400 1.000 N NA
 3613800 3613801 Pmen_0614 Pmen_0615     TRUE 0.998 -3.000 0.441 0.063 Y NA
 3613801 3613802 Pmen_0615 Pmen_0616     TRUE 0.627 142.000 0.324 1.000   NA
 3613805 3613806 Pmen_0619 Pmen_0620     TRUE 0.746 65.000 0.400 NA   NA
 3613806 3613807 Pmen_0620 Pmen_0621   psd FALSE 0.143 167.000 0.023 NA   NA
 3613807 3613808 Pmen_0621 Pmen_0622 psd   TRUE 0.509 57.000 0.125 1.000 N NA
 3613808 3613809 Pmen_0622 Pmen_0623     TRUE 0.479 67.000 0.156 NA   NA
 3613810 3613811 Pmen_0624 Pmen_0625   motB TRUE 0.994 17.000 0.722 1.000 Y NA
 3613813 3613814 Pmen_0627 Pmen_0628     FALSE 0.163 57.000 0.000 NA   NA
 3613816 3613817 Pmen_0630 Pmen_0631     TRUE 0.943 -12.000 0.118 NA   NA
 3613817 3613818 Pmen_0631 Pmen_0632     TRUE 0.693 23.000 0.033 NA   NA
 3613818 3613819 Pmen_0632 Pmen_0633   mutL TRUE 0.884 9.000 0.030 1.000 N NA
 3613819 3613820 Pmen_0633 Pmen_0634 mutL miaA TRUE 0.974 0.000 0.188 1.000 N NA
 3613820 3613821 Pmen_0634 Pmen_0635 miaA hfq TRUE 0.785 102.000 0.531 1.000   NA
 3613821 3613822 Pmen_0635 Pmen_0636 hfq   TRUE 0.920 13.000 0.141 1.000   NA
 3613822 3613823 Pmen_0636 Pmen_0637     TRUE 0.623 98.000 0.184 0.074   NA
 3613823 3613824 Pmen_0637 Pmen_0638     TRUE 0.999 0.000 0.947 0.008 Y NA
 3613824 3613825 Pmen_0638 Pmen_0639     TRUE 0.642 141.000 0.348 NA   NA
 3613825 3613826 Pmen_0639 Pmen_0640   hisZ TRUE 0.675 38.000 0.117 NA   NA
 3613826 3613827 Pmen_0640 Pmen_0641 hisZ   TRUE 0.548 57.000 0.161 1.000 N NA
 3613827 3613828 Pmen_0641 Pmen_0642     FALSE 0.075 209.000 0.007 1.000 N NA
 3613829 3613830 Pmen_R0002 Pmen_R0003     FALSE 0.122 83.000 0.000 NA   NA
 3613831 3613832 Pmen_0643 Pmen_0644     TRUE 0.984 -3.000 0.147 0.014 N NA
 3613832 3613833 Pmen_0644 Pmen_0645   rpsF TRUE 0.436 176.000 0.017 1.000 Y NA
 3613833 3613834 Pmen_0645 Pmen_0646 rpsF rpsR TRUE 0.981 29.000 0.319 0.012 Y NA
 3613834 3613835 Pmen_0646 Pmen_0647 rpsR   TRUE 0.532 37.000 0.034 NA   NA
 3613835 3613836 Pmen_0647 Pmen_0648   rplI TRUE 0.710 22.000 0.034 NA   NA
 3613836 3613837 Pmen_0648 Pmen_0649 rplI   FALSE 0.332 120.000 0.074 1.000 N NA
 3613837 3613838 Pmen_0649 Pmen_0650     FALSE 0.227 78.000 0.020 1.000 N NA
 3613840 3613841 Pmen_0652 Pmen_0653     FALSE 0.114 118.000 0.000 NA   NA
 3613841 3613842 Pmen_0653 Pmen_0654     TRUE 0.990 -3.000 0.433 NA   NA
 3613842 3613843 Pmen_0654 Pmen_0655     FALSE 0.059 188.000 0.000 NA   NA
 3613843 3613844 Pmen_0655 Pmen_0656     TRUE 0.834 112.000 0.667 NA   NA
 3613844 3613845 Pmen_0656 Pmen_0657     TRUE 0.996 -3.000 0.734 NA   NA
 3613846 3613847 Pmen_0658 Pmen_0659     FALSE 0.015 390.000 0.000 NA   NA
 3613847 3613848 Pmen_0659 Pmen_0660     FALSE 0.137 66.000 0.000 NA   NA
 3613848 3613849 Pmen_0660 Pmen_0661     FALSE 0.039 237.000 0.000 NA   NA
 3613849 3613850 Pmen_0661 Pmen_0662     FALSE 0.013 522.000 0.000 1.000 N NA
 3613850 3613851 Pmen_0662 Pmen_0663     FALSE 0.094 143.000 0.000 NA N NA
 3613851 3613852 Pmen_0663 Pmen_0664     TRUE 0.935 22.000 0.068 NA Y NA
 3613852 3613853 Pmen_0664 Pmen_0665     TRUE 0.996 17.000 0.550 0.002 Y NA
 3613853 3613854 Pmen_0665 Pmen_0666   ureE TRUE 0.987 38.000 0.560 0.002 Y NA
 3613854 3613855 Pmen_0666 Pmen_0667 ureE   FALSE 0.135 164.000 0.010 1.000   NA
 3613856 3613857 Pmen_0668 Pmen_0669     TRUE 0.968 -3.000 0.154 1.000 N NA
 3613859 3613860 Pmen_0671 Pmen_0672     FALSE 0.134 94.000 0.000 1.000   NA
 3613860 3613861 Pmen_0672 Pmen_0673     FALSE 0.084 159.000 0.000 NA   NA
 3613861 3613862 Pmen_0673 Pmen_0674     TRUE 0.999 0.000 0.865 NA Y NA
 3613862 3613863 Pmen_0674 Pmen_0675     TRUE 0.958 136.000 0.938 NA Y NA
 3613863 3613864 Pmen_0675 Pmen_0676     FALSE 0.020 341.000 0.000 1.000 N NA
 3613864 3613865 Pmen_0676 Pmen_0677     TRUE 0.494 100.000 0.190 1.000 N NA
 3613865 3613866 Pmen_0677 Pmen_0678     TRUE 0.998 9.000 0.706 0.063 Y NA
 3613867 3613868 Pmen_0679 Pmen_0680     FALSE 0.168 56.000 0.000 NA   NA
 3613868 3613869 Pmen_0680 Pmen_0681     TRUE 0.986 1.000 0.321 NA   NA
 3613869 3613870 Pmen_0681 Pmen_0682     FALSE 0.171 108.000 0.009 NA   NA
 3613870 3613871 Pmen_0682 Pmen_0683     FALSE 0.195 68.000 0.009 NA   NA
 3613871 3613872 Pmen_0683 Pmen_0684     FALSE 0.084 193.000 0.008 NA   NA
 3613872 3613873 Pmen_0684 Pmen_0685     TRUE 0.445 35.000 0.008 NA   NA
 3613874 3613875 Pmen_0686 Pmen_0687     FALSE 0.115 80.000 0.000 NA N NA
 3613875 3613876 Pmen_0687 Pmen_0688     FALSE 0.129 82.000 0.000 1.000 N NA
 3613876 3613877 Pmen_0688 Pmen_0689     FALSE 0.116 128.000 0.000 1.000 N NA
 3613877 3613878 Pmen_0689 Pmen_0690     FALSE 0.251 70.000 0.027 1.000 N NA
 3613878 3613879 Pmen_0690 Pmen_0691     FALSE 0.126 79.000 0.000 NA   NA
 3613880 3613881 Pmen_0692 Pmen_0693 ureC ureB TRUE 0.952 88.000 0.486 0.001 Y NA
 3613881 3613882 Pmen_0693 Pmen_0694 ureB   TRUE 0.848 8.000 0.010 1.000 N NA
 3613882 3613883 Pmen_0694 Pmen_0695   ureA TRUE 0.906 4.000 0.029 1.000 N NA
 3613883 3613884 Pmen_0695 Pmen_0696 ureA   TRUE 0.835 186.000 0.664 0.002 N NA
 3613884 3613885 Pmen_0696 Pmen_0697     FALSE 0.259 238.000 0.221 1.000 N NA
 3613885 3613886 Pmen_0697 Pmen_0698     TRUE 0.916 89.000 0.731 0.021   NA
 3613886 3613887 Pmen_0698 Pmen_0699     TRUE 0.997 -3.000 0.823 1.000   NA
 3613887 3613888 Pmen_0699 Pmen_0700     TRUE 0.999 0.000 0.758 0.067 Y NA
 3613888 3613889 Pmen_0700 Pmen_0701     TRUE 0.912 158.000 0.654 1.000 Y NA
 3613889 3613890 Pmen_0701 Pmen_0702     FALSE 0.246 75.000 0.026 1.000 N NA
 3613890 3613891 Pmen_0702 Pmen_0703     TRUE 0.959 2.000 0.114 1.000 N NA
 3613891 3613892 Pmen_0703 Pmen_0704     TRUE 0.667 118.000 0.343 1.000 N NA
 3613892 3613893 Pmen_0704 Pmen_0705     FALSE 0.028 261.000 0.000 NA N NA
 3613893 3613894 Pmen_0705 Pmen_0706     TRUE 0.504 34.000 0.020 NA N NA
 3613894 3613895 Pmen_0706 Pmen_0707     FALSE 0.179 110.000 0.010 1.000 N NA
 3613895 3613896 Pmen_0707 Pmen_0708   purH TRUE 0.592 220.000 0.238 1.000 Y NA
 3613896 3613897 Pmen_0708 Pmen_0709 purH fis FALSE 0.406 72.000 0.101 1.000 N NA
 3613897 3613898 Pmen_0709 Pmen_0710 fis   TRUE 0.969 -3.000 0.161 1.000 N NA
 3613898 3613899 Pmen_0710 Pmen_0711     FALSE 0.058 228.000 0.003 NA   NA
 3613899 3613900 Pmen_0711 Pmen_0712   prmA FALSE 0.122 158.000 0.006 NA   NA
 3613900 3613901 Pmen_0712 Pmen_0713 prmA   FALSE 0.408 140.000 0.152 1.000 N NA
 3613901 3613902 Pmen_0713 Pmen_0714     TRUE 0.990 18.000 0.275 0.001 Y NA
 3613902 3613903 Pmen_0714 Pmen_0715     TRUE 0.713 51.000 0.254 1.000 N NA
 3613903 3613904 Pmen_0715 Pmen_0716   dipZ FALSE 0.160 144.000 0.010 1.000 N NA
 3613904 3613905 Pmen_0716 Pmen_0717 dipZ   TRUE 0.516 158.000 0.273 1.000 N NA
 3613905 3613906 Pmen_0717 Pmen_0718     FALSE 0.120 110.000 0.000 1.000 N NA
 3613906 3613907 Pmen_0718 Pmen_0719     TRUE 0.990 4.000 0.286 0.009 N NA
 3613907 3613908 Pmen_0719 Pmen_0720     TRUE 0.996 10.000 0.765 0.009   NA
 3613908 3613909 Pmen_0720 Pmen_0721     FALSE 0.124 129.000 0.000 1.000   NA
 3613909 3613910 Pmen_0721 Pmen_0722     FALSE 0.372 256.000 0.000 0.002 Y NA
 3613910 3613911 Pmen_0722 Pmen_0723     FALSE 0.112 136.000 0.000 1.000 N NA
 3613912 3613913 Pmen_0724 Pmen_0725     TRUE 0.959 0.000 0.101 NA   NA
 3613913 3613914 Pmen_0725 Pmen_0726     FALSE 0.051 279.000 0.017 1.000 N NA
 3613914 3613915 Pmen_0726 Pmen_0727     FALSE 0.212 123.000 0.023 1.000 N NA
 3613916 3613917 Pmen_0728 Pmen_0729     TRUE 0.450 35.000 0.009 NA   NA
 3613918 3613919 Pmen_0730 Pmen_0731     FALSE 0.136 85.000 0.000 1.000   NA
 3613919 3613920 Pmen_0731 Pmen_0732     FALSE 0.134 73.000 0.000 1.000 N NA
 3613920 3613921 Pmen_0732 Pmen_0733     FALSE 0.137 69.000 0.000 1.000 N NA
 3613921 3613922 Pmen_0733 Pmen_0734     TRUE 0.463 148.000 0.000 1.000 Y NA
 3613923 3613924 Pmen_0735 Pmen_0736     FALSE 0.081 162.000 0.000 NA   NA
 3613924 3613925 Pmen_0736 Pmen_0737     FALSE 0.313 37.000 0.000 NA   NA
 3613925 3613926 Pmen_0737 Pmen_0738     TRUE 0.835 17.000 0.071 NA   NA
 3613926 3613927 Pmen_0738 Pmen_0739     TRUE 0.952 23.000 0.455 NA   NA
 3613927 3613928 Pmen_0739 Pmen_0740     FALSE 0.375 76.000 0.087 NA   NA
 3613928 3613929 Pmen_0740 Pmen_0741     TRUE 0.954 -3.000 0.088 NA   NA
 3613929 3613930 Pmen_0741 Pmen_0742     FALSE 0.231 141.000 0.036 NA   NA
 3613933 3613934 Pmen_0745 Pmen_0746     FALSE 0.016 398.000 0.000 1.000 N NA
 3613934 3613935 Pmen_0746 Pmen_0747     TRUE 0.999 3.000 0.750 0.066 Y NA
 3613935 3613936 Pmen_0747 Pmen_0748     FALSE 0.278 154.000 0.075 NA   NA
 3613936 3613937 Pmen_0748 Pmen_0749     FALSE 0.129 70.000 0.000 NA   NA
 3613937 3613938 Pmen_0749 Pmen_0750     TRUE 0.980 0.000 0.233 NA   NA
 3613940 3613941 Pmen_0752 Pmen_0753     FALSE 0.114 112.000 0.000 NA   NA
 3613941 3613942 Pmen_0753 Pmen_0754     FALSE 0.126 79.000 0.000 NA   NA
 3613947 3613948 Pmen_0759 Pmen_0760 glyA   TRUE 0.458 196.000 0.333 1.000 N NA
 3613948 3613949 Pmen_0760 Pmen_0761     TRUE 0.598 16.000 0.000 NA   NA
 3613951 3613952 Pmen_0763 Pmen_0764     TRUE 0.990 10.000 0.600 NA   NA
 3613953 3613954 Pmen_R0004 Pmen_R0005     TRUE 0.747 10.000 0.000 NA   NA
 3613954 3613955 Pmen_R0005 Pmen_R0006     TRUE 0.776 7.000 0.000 NA   NA
 3613956 3613957 Pmen_0765 Pmen_0766     TRUE 0.866 64.000 0.667 NA   NA
 3613957 3613958 Pmen_0766 Pmen_0767     TRUE 0.685 25.000 0.039 NA   NA
 3613958 3613959 Pmen_0767 Pmen_0768     TRUE 0.935 -3.000 0.039 1.000   NA
 3613960 3613961 Pmen_0769 Pmen_0770     TRUE 0.731 24.000 0.054 NA   NA
 3613962 3613963 Pmen_0771 Pmen_0772   coaE TRUE 0.930 -3.000 0.033 1.000   NA
 3613963 3613964 Pmen_0772 Pmen_0773 coaE   FALSE 0.297 168.000 0.122 1.000 N NA
 3613964 3613965 Pmen_0773 Pmen_0774     TRUE 0.997 1.000 0.454 1.000 Y NA
 3613965 3613966 Pmen_0774 Pmen_0775     TRUE 0.998 3.000 0.362 0.014 Y NA
 3613966 3613967 Pmen_0775 Pmen_0776     FALSE 0.031 267.000 0.000 1.000 N NA
 3613970 3613971 Pmen_0779 Pmen_0780     FALSE 0.048 374.000 0.048 NA   NA
 3613971 3613972 Pmen_0780 Pmen_0781     TRUE 0.993 3.000 0.249 1.000 Y NA
 3613972 3613973 Pmen_0781 Pmen_0782     FALSE 0.052 342.000 0.042 1.000 N NA
 3613977 3613978 Pmen_0786 Pmen_0787     TRUE 0.989 0.000 0.101 1.000 Y NA
 3613978 3613979 Pmen_0787 Pmen_0788     TRUE 0.995 12.000 0.562 1.000 Y NA
 3613979 3613980 Pmen_0788 Pmen_0789     FALSE 0.114 118.000 0.000 NA   NA
 3613984 3613985 Pmen_0793 Pmen_0794     FALSE 0.125 91.000 0.000 1.000 N NA
 3613985 3613986 Pmen_0794 Pmen_0795     TRUE 0.998 -3.000 0.556 1.000 Y NA
 3613986 3613987 Pmen_0795 Pmen_0796     TRUE 0.634 89.000 0.300 1.000 N NA
 3613987 3613988 Pmen_0796 Pmen_0797     TRUE 0.993 0.000 0.200 1.000 Y NA
 3613988 3613989 Pmen_0797 Pmen_0798     TRUE 0.965 12.000 0.035 1.000 Y NA
 3613989 3613990 Pmen_0798 Pmen_0799     TRUE 0.999 -3.000 0.833 1.000 Y NA
 3613990 3613991 Pmen_0799 Pmen_0800     TRUE 0.909 4.000 0.033 NA   NA
 3613991 3613992 Pmen_0800 Pmen_0801     FALSE 0.016 381.000 0.000 NA   NA
 3613992 3613993 Pmen_0801 Pmen_0802     FALSE 0.027 288.000 0.000 1.000 N NA
 3613993 3613994 Pmen_0802 Pmen_0803     TRUE 0.610 137.000 0.300 1.000   NA
 3613994 3613995 Pmen_0803 Pmen_0804     TRUE 0.783 26.000 0.095 1.000   NA
 3613995 3613996 Pmen_0804 Pmen_0805     FALSE 0.038 243.000 0.000 1.000 N NA
 3613999 3614000 Pmen_0808 Pmen_0809     FALSE 0.143 76.000 0.000 1.000   NA
 3614001 3614002 Pmen_0810 Pmen_0811     FALSE 0.126 87.000 0.000 1.000 N NA
 3614003 3614004 Pmen_0812 Pmen_0813     FALSE 0.313 37.000 0.000 NA   NA
 3614004 3614005 Pmen_0813 Pmen_0814     FALSE 0.118 97.000 0.000 NA   NA
 3614005 3614006 Pmen_0814 Pmen_0815     FALSE 0.011 688.000 0.000 NA   NA
 3614006 3614007 Pmen_0815 Pmen_0816     FALSE 0.028 273.000 0.000 NA   NA
 3614007 3614008 Pmen_0816 Pmen_0817     TRUE 0.988 7.000 0.500 NA   NA
 3614008 3614009 Pmen_0817 Pmen_0818     TRUE 0.849 75.000 0.667 NA   NA
 3614009 3614010 Pmen_0818 Pmen_0819     TRUE 0.997 -3.000 1.000 NA   NA
 3614010 3614011 Pmen_0819 Pmen_0820     TRUE 0.834 -3.000 0.000 NA   NA
 3614011 3614012 Pmen_0820 Pmen_0821     FALSE 0.107 134.000 0.000 NA   NA
 3614012 3614013 Pmen_0821 Pmen_0822     FALSE 0.140 65.000 0.000 NA   NA
 3614016 3614017 Pmen_0825 Pmen_0826     TRUE 0.996 6.000 0.945 1.000 N NA
 3614017 3614018 Pmen_0826 Pmen_0827     FALSE 0.295 93.000 0.000 0.066 N NA
 3614019 3614020 Pmen_0828 Pmen_0829     TRUE 0.553 40.000 0.057 NA   NA
 3614022 3614023 Pmen_0831 Pmen_0832     FALSE 0.400 59.000 0.062 1.000   NA
 3614026 3614027 Pmen_0835 Pmen_0836     TRUE 0.887 35.000 0.000 0.023 Y NA
 3614028 3614029 Pmen_0837 Pmen_0838 dppF   TRUE 0.998 0.000 0.377 0.001 Y NA
 3614029 3614030 Pmen_0838 Pmen_0839     TRUE 0.920 103.000 0.560 1.000 Y NA
 3614030 3614031 Pmen_0839 Pmen_0840     TRUE 0.967 100.000 0.779 0.066 Y NA
 3614031 3614032 Pmen_0840 Pmen_0841     TRUE 0.547 162.000 0.000 0.066 Y NA
 3614032 3614033 Pmen_0841 Pmen_0842     FALSE 0.230 175.000 0.077 1.000 N NA
 3614035 3614036 Pmen_0844 Pmen_0845     TRUE 0.748 54.000 0.000 0.066 Y NA
 3614036 3614037 Pmen_0845 Pmen_0846     FALSE 0.042 226.000 0.000 NA   NA
 3614038 3614039 Pmen_0847 Pmen_0848     TRUE 0.994 16.000 0.682 1.000 Y NA
 3614039 3614040 Pmen_0848 Pmen_0849     FALSE 0.192 166.000 0.038 1.000   NA
 3614041 3614042 Pmen_0850 Pmen_0851     TRUE 0.837 3.000 0.000 1.000   NA
 3614042 3614043 Pmen_0851 Pmen_0852     FALSE 0.118 92.000 0.000 NA   NA
 3614043 3614044 Pmen_0852 Pmen_0853   gatB FALSE 0.192 70.000 0.010 NA   NA
 3614044 3614045 Pmen_0853 Pmen_0854 gatB gatA TRUE 0.997 12.000 0.492 0.001 Y NA
 3614045 3614046 Pmen_0854 Pmen_0855 gatA gatC TRUE 0.997 16.000 0.643 0.001 Y NA
 3614047 3614048 Pmen_0856 Pmen_0857     TRUE 0.834 133.000 0.689 1.000 N NA
 3614048 3614049 Pmen_0857 Pmen_0858     TRUE 0.999 0.000 0.550 0.002 Y NA
 3614049 3614050 Pmen_0858 Pmen_0859     TRUE 0.651 50.000 0.206 NA N NA
 3614050 3614051 Pmen_0859 Pmen_0860     TRUE 0.712 101.000 0.417 NA N NA
 3614051 3614052 Pmen_0860 Pmen_0861     TRUE 0.942 18.000 0.296 NA   NA
 3614052 3614053 Pmen_0861 Pmen_0862     TRUE 0.872 38.000 0.358 NA   NA
 3614053 3614054 Pmen_0862 Pmen_0863     TRUE 0.979 3.000 0.259 NA   NA
 3614057 3614058 Pmen_0866 Pmen_0867     TRUE 0.917 15.000 0.182 NA   NA
 3614058 3614059 Pmen_0867 Pmen_0868     TRUE 0.969 3.000 0.186 NA   NA
 3614059 3614060 Pmen_0868 Pmen_0869     TRUE 0.989 13.000 0.728 NA N NA
 3614060 3614061 Pmen_0869 Pmen_0870     TRUE 0.876 99.000 0.820 NA N NA
 3614061 3614062 Pmen_0870 Pmen_0871     TRUE 0.437 137.000 0.163 1.000   NA
 3614062 3614063 Pmen_0871 Pmen_0872     TRUE 0.993 0.000 0.543 NA   NA
 3614063 3614064 Pmen_0872 Pmen_0873     TRUE 0.986 -13.000 0.459 NA   NA
 3614064 3614065 Pmen_0873 Pmen_0874     TRUE 0.991 9.000 0.617 NA   NA
 3614065 3614066 Pmen_0874 Pmen_0875     TRUE 0.994 0.000 0.598 1.000   NA
 3614067 3614068 Pmen_0876 Pmen_0877     TRUE 0.998 0.000 0.530 NA Y NA
 3614068 3614069 Pmen_0877 Pmen_0878     TRUE 0.994 0.000 0.562 NA   NA
 3614069 3614070 Pmen_0878 Pmen_0879     TRUE 0.872 15.000 0.091 NA   NA
 3614070 3614071 Pmen_0879 Pmen_0880     TRUE 0.988 -3.000 0.353 NA   NA
 3614071 3614072 Pmen_0880 Pmen_0881     FALSE 0.305 125.000 0.067 NA   NA
 3614072 3614073 Pmen_0881 Pmen_0882     TRUE 0.904 23.000 0.258 NA N NA
 3614073 3614074 Pmen_0882 Pmen_0883   hisG TRUE 0.465 64.000 0.123 1.000 N NA
 3614074 3614075 Pmen_0883 Pmen_0884 hisG hisD TRUE 0.894 124.000 0.254 0.004 Y NA
 3614075 3614076 Pmen_0884 Pmen_0885 hisD   TRUE 0.805 131.000 0.087 0.004 Y NA
 3614077 3614078 Pmen_0886 Pmen_0887     TRUE 0.973 14.000 0.152 NA Y NA
 3614078 3614079 Pmen_0887 Pmen_0888     FALSE 0.259 87.000 0.034 1.000 N NA
 3614080 3614081 Pmen_0889 Pmen_0890     FALSE 0.218 133.000 0.030 NA   NA
 3614081 3614082 Pmen_0890 Pmen_0891     TRUE 0.960 13.000 0.096 0.001 N NA
 3614084 3614085 Pmen_0893 Pmen_0894     FALSE 0.276 135.000 0.048 1.000   NA
 3614085 3614086 Pmen_0894 Pmen_0895     FALSE 0.308 99.000 0.061 NA   NA
 3614087 3614088 Pmen_0896 Pmen_0897     FALSE 0.326 129.000 0.080 NA   NA
 3614089 3614090 Pmen_0898 Pmen_0899     FALSE 0.135 72.000 0.000 1.000 N NA
 3614092 3614093 Pmen_0901 Pmen_0902 rplM rpsI TRUE 0.996 15.000 0.601 0.012 Y NA
 3614093 3614094 Pmen_0902 Pmen_0903 rpsI   FALSE 0.050 254.000 0.006 1.000 N NA
 3614094 3614095 Pmen_0903 Pmen_0904     TRUE 0.997 0.000 0.233 0.001 Y NA
 3614095 3614096 Pmen_0904 Pmen_0905     TRUE 0.999 0.000 0.630 0.001 Y NA
 3614096 3614097 Pmen_0905 Pmen_0906     TRUE 0.581 165.000 0.370 NA N NA
 3614097 3614098 Pmen_0906 Pmen_0907     TRUE 0.989 15.000 0.831 NA   NA
 3614099 3614100 Pmen_0908 Pmen_0909   gmhA TRUE 0.994 -3.000 0.613 NA   NA
 3614100 3614101 Pmen_0909 Pmen_0910 gmhA   TRUE 0.849 26.000 0.187 1.000 N NA
 3614101 3614102 Pmen_0910 Pmen_0911     TRUE 0.970 -3.000 0.172 NA   NA
 3614103 3614104 Pmen_0912 Pmen_R0007     FALSE 0.078 165.000 0.000 NA   NA
 3614104 3614105 Pmen_R0007 Pmen_0913     FALSE 0.020 327.000 0.000 NA   NA
 3614105 3614106 Pmen_0913 Pmen_0914   mraW TRUE 0.994 3.000 0.635 NA   NA
 3614106 3614107 Pmen_0914 Pmen_0915 mraW   TRUE 0.979 -3.000 0.227 1.000 N NA
 3614107 3614108 Pmen_0915 Pmen_0916     TRUE 0.968 -3.000 0.153 1.000 N NA
 3614108 3614109 Pmen_0916 Pmen_0917   murE TRUE 0.988 0.000 0.073 1.000 Y NA
 3614109 3614110 Pmen_0917 Pmen_0918 murE   TRUE 0.999 -7.000 0.569 0.002 Y NA
 3614110 3614111 Pmen_0918 Pmen_0919   mraY TRUE 0.997 1.000 0.309 0.004 Y NA
 3614111 3614112 Pmen_0919 Pmen_0920 mraY murD TRUE 0.999 7.000 0.647 0.004 Y NA
 3614112 3614113 Pmen_0920 Pmen_0921 murD   TRUE 0.993 0.000 0.297 0.003 N NA
 3614113 3614114 Pmen_0921 Pmen_0922   murG TRUE 0.992 -10.000 0.647 1.000 N NA
 3614114 3614115 Pmen_0922 Pmen_0923 murG murC TRUE 0.993 -7.000 0.283 1.000 Y NA
 3614115 3614116 Pmen_0923 Pmen_0924 murC ddl TRUE 0.995 -3.000 0.153 0.004 Y NA
 3614116 3614117 Pmen_0924 Pmen_0925 ddl   TRUE 0.995 4.000 0.372 NA Y NA
 3614117 3614118 Pmen_0925 Pmen_0926     TRUE 0.962 16.000 0.389 NA N NA
 3614118 3614119 Pmen_0926 Pmen_0927     TRUE 0.958 43.000 0.460 1.000 Y NA
 3614119 3614120 Pmen_0927 Pmen_0928   lpxC FALSE 0.418 112.000 0.134 1.000 N NA
 3614122 3614123 Pmen_0930 Pmen_0931   secA FALSE 0.266 155.000 0.068 1.000 N NA
 3614123 3614124 Pmen_0931 Pmen_0932 secA argJ FALSE 0.329 152.000 0.102 1.000 N NA
 3614124 3614125 Pmen_0932 Pmen_0933 argJ   FALSE 0.173 131.000 0.011 1.000 N NA
 3614125 3614126 Pmen_0933 Pmen_0934     TRUE 0.935 -3.000 0.042 1.000 N NA
 3614127 3614128 Pmen_0935 Pmen_0936     TRUE 0.911 4.000 0.030 1.000   NA
 3614128 3614129 Pmen_0936 Pmen_0937     FALSE 0.286 107.000 0.049 1.000 N NA
 3614129 3614130 Pmen_0937 Pmen_0938     TRUE 0.919 -3.000 0.027 1.000 N NA
 3614131 3614132 Pmen_0939 Pmen_0940     FALSE 0.206 104.000 0.021 NA   NA
 3614133 3614134 Pmen_0941 Pmen_0942     TRUE 0.617 44.000 0.120 NA   NA
 3614135 3614136 Pmen_0943 Pmen_0944     FALSE 0.384 151.000 0.154 NA   NA
 3614137 3614138 Pmen_0945 Pmen_0946   upp TRUE 0.988 3.000 0.101 1.000 Y NA
 3614143 3614144 Pmen_0951 Pmen_0952     TRUE 0.434 145.000 0.169 1.000   NA
 3614144 3614145 Pmen_0952 Pmen_0953   ileS TRUE 0.981 -3.000 0.254 1.000 N NA
 3614145 3614146 Pmen_0953 Pmen_0954 ileS lspA TRUE 0.956 -7.000 0.147 1.000 N NA
 3614146 3614147 Pmen_0954 Pmen_0955 lspA   TRUE 0.990 -3.000 0.417 1.000 N NA
 3614147 3614148 Pmen_0955 Pmen_0956   ispH TRUE 0.808 139.000 0.626 1.000 N NA
 3614149 3614150 Pmen_0957 Pmen_0958     TRUE 0.971 3.000 0.000 NA Y NA
 3614150 3614151 Pmen_0958 Pmen_0959     TRUE 0.897 12.000 0.077 NA   NA
 3614151 3614152 Pmen_0959 Pmen_0960     TRUE 0.995 -3.000 0.667 NA   NA
 3614152 3614153 Pmen_0960 Pmen_0961     TRUE 0.998 -3.000 0.750 NA Y NA
 3614153 3614154 Pmen_0961 Pmen_0962     TRUE 0.960 9.000 0.000 NA Y NA
 3614154 3614155 Pmen_0962 Pmen_0963     TRUE 0.463 142.000 0.000 NA Y NA
 3614157 3614158 Pmen_0965 Pmen_0966     TRUE 0.997 3.000 0.556 1.000 Y NA
 3614158 3614159 Pmen_0966 Pmen_0967     TRUE 0.860 -10.000 0.016 NA   NA
 3614159 3614160 Pmen_0967 Pmen_0968     FALSE 0.047 212.000 0.000 NA   NA
 3614161 3614162 Pmen_0969 Pmen_0970     TRUE 0.970 -3.000 0.168 NA   NA
 3614162 3614163 Pmen_0970 Pmen_0971     FALSE 0.113 122.000 0.000 NA   NA
 3614163 3614164 Pmen_0971 Pmen_0972     TRUE 0.733 27.000 0.070 1.000 N NA
 3614164 3614165 Pmen_0972 Pmen_0973     FALSE 0.217 47.000 0.000 NA   NA
 3614168 3614169 Pmen_0976 Pmen_0977     FALSE 0.190 72.000 0.007 1.000 N NA
 3614171 3614172 Pmen_0979 Pmen_0980     TRUE 0.997 -3.000 0.950 NA   NA
 3614172 3614173 Pmen_0980 Pmen_0981     TRUE 0.906 85.000 0.947 NA   NA
 3614174 3614175 Pmen_0982 Pmen_0983     TRUE 0.521 192.000 0.400 NA   NA
 3614175 3614176 Pmen_0983 Pmen_0984     TRUE 0.996 3.000 0.800 NA   NA
 3614176 3614177 Pmen_0984 Pmen_0985     TRUE 0.996 -13.000 1.000 NA   NA
 3614177 3614178 Pmen_0985 Pmen_0986     TRUE 0.991 12.000 0.800 NA   NA
 3614178 3614179 Pmen_0986 Pmen_0987     FALSE 0.037 240.000 0.000 NA   NA
 3614179 3614180 Pmen_0987 Pmen_0988     TRUE 0.888 128.000 0.444 1.000 Y NA
 3614180 3614181 Pmen_0988 Pmen_0989     FALSE 0.265 221.000 0.000 1.000 Y NA
 3614181 3614182 Pmen_0989 Pmen_0990     TRUE 0.890 -3.000 0.010 NA   NA
 3614182 3614183 Pmen_0990 Pmen_0991     FALSE 0.178 155.000 0.027 NA   NA
 3614185 3614186 Pmen_0993 Pmen_0994     TRUE 0.999 -3.000 0.852 1.000 Y NA
 3614186 3614187 Pmen_0994 Pmen_0995     TRUE 0.995 0.000 0.292 1.000 Y NA
 3614187 3614188 Pmen_0995 Pmen_0996     TRUE 0.749 16.000 0.021 NA   NA
 3614188 3614189 Pmen_0996 Pmen_0997     FALSE 0.153 60.000 0.000 NA   NA
 3614190 3614191 Pmen_0998 Pmen_0999     TRUE 0.565 106.000 0.250 NA   NA
 3614191 3614192 Pmen_0999 Pmen_1000     FALSE 0.123 82.000 0.000 NA   NA
 3614192 3614193 Pmen_1000 Pmen_1001     FALSE 0.196 76.000 0.012 NA   NA
 3614194 3614195 Pmen_1002 Pmen_1003     FALSE 0.292 68.000 0.035 1.000   NA
 3614195 3614196 Pmen_1003 Pmen_1004     TRUE 0.943 0.000 0.055 NA   NA
 3614198 3614199 Pmen_1006 Pmen_1007   ilvH TRUE 0.998 2.000 0.371 0.001 Y NA
 3614201 3614202 Pmen_1009 Pmen_1010     FALSE 0.237 148.000 0.041 1.000 N NA
 3614202 3614203 Pmen_1010 Pmen_1011     FALSE 0.275 67.000 0.029 1.000   NA
 3614203 3614204 Pmen_1011 Pmen_1012     TRUE 0.998 0.000 0.790 0.064   NA
 3614204 3614205 Pmen_1012 Pmen_R0008     FALSE 0.012 546.000 0.000 NA   NA
 3614205 3614206 Pmen_R0008 Pmen_R0009     FALSE 0.127 74.000 0.000 NA   NA
 3614206 3614207 Pmen_R0009 Pmen_R0010     TRUE 0.481 23.000 0.000 NA   NA
 3614207 3614208 Pmen_R0010 Pmen_R0011     FALSE 0.033 254.000 0.000 NA   NA
 3614208 3614209 Pmen_R0011 Pmen_R0012     FALSE 0.098 148.000 0.000 NA   NA
 3614209 3614210 Pmen_R0012 Pmen_1013     FALSE 0.058 190.000 0.000 NA   NA
 3614210 3614211 Pmen_1013 Pmen_1014     TRUE 0.940 -13.000 0.114 NA   NA
 3614211 3614212 Pmen_1014 Pmen_1015     TRUE 0.995 -7.000 0.840 NA   NA
 3614213 3614214 Pmen_1016 Pmen_1017     TRUE 0.449 25.000 0.000 NA   NA
 3614214 3614215 Pmen_1017 Pmen_1018     TRUE 0.987 -3.000 0.333 NA   NA
 3614215 3614216 Pmen_1018 Pmen_1019     TRUE 0.967 25.000 0.636 NA   NA
 3614216 3614217 Pmen_1019 Pmen_1020     FALSE 0.292 178.000 0.150 NA   NA
 3614217 3614218 Pmen_1020 Pmen_1021     TRUE 0.708 95.000 0.400 NA   NA
 3614218 3614219 Pmen_1021 Pmen_1022     TRUE 0.964 38.000 0.889 NA   NA
 3614219 3614220 Pmen_1022 Pmen_1023     TRUE 0.991 14.000 0.889 NA   NA
 3614220 3614221 Pmen_1023 Pmen_1024   algL TRUE 0.574 185.000 0.438 NA   NA
 3614221 3614222 Pmen_1024 Pmen_1025 algL   TRUE 0.987 11.000 0.562 NA   NA
 3614222 3614223 Pmen_1025 Pmen_1026     TRUE 0.982 12.000 0.500 NA   NA
 3614223 3614224 Pmen_1026 Pmen_1027     TRUE 0.988 12.000 0.625 NA   NA
 3614224 3614225 Pmen_1027 Pmen_1028     TRUE 0.852 -3.000 0.000 1.000   NA
 3614225 3614226 Pmen_1028 Pmen_1029     TRUE 0.723 11.000 0.000 NA   NA
 3614226 3614227 Pmen_1029 Pmen_1030     FALSE 0.424 27.000 0.000 NA   NA
 3614227 3614228 Pmen_1030 Pmen_1031     TRUE 0.655 49.000 0.000 NA Y NA
 3614228 3614229 Pmen_1031 Pmen_1032     FALSE 0.011 698.000 0.000 NA   NA
 3614230 3614231 Pmen_1033 Pmen_1034   moaC FALSE 0.133 165.000 0.013 1.000 N NA
 3614231 3614232 Pmen_1034 Pmen_1035 moaC   TRUE 0.992 -3.000 0.175 1.000 Y NA
 3614232 3614233 Pmen_1035 Pmen_1036     TRUE 0.887 154.000 0.501 1.000 Y NA
 3614235 3614236 Pmen_1038 Pmen_1039     FALSE 0.024 291.000 0.000 NA   NA
 3614236 3614237 Pmen_1039 Pmen_1040     FALSE 0.115 102.000 0.000 NA   NA
 3614238 3614239 Pmen_1041 Pmen_1042     FALSE 0.424 27.000 0.000 NA   NA
 3614243 3614244 Pmen_1045 Pmen_1046     TRUE 0.977 -3.000 0.214 NA   NA
 3614244 3614245 Pmen_1046 Pmen_1047     FALSE 0.183 53.000 0.000 NA   NA
 3614246 3614247 Pmen_1048 Pmen_1049     FALSE 0.012 500.000 0.000 NA   NA
 3614247 3614248 Pmen_1049 Pmen_1050     TRUE 0.531 20.000 0.000 NA   NA
 3614249 3614250 Pmen_1051 Pmen_1052     FALSE 0.049 223.000 0.000 1.000   NA
 3614250 3614251 Pmen_1052 Pmen_1053     TRUE 0.950 26.000 0.184 1.000 Y NA
 3614251 3614252 Pmen_1053 Pmen_1054     TRUE 0.954 64.000 0.496 0.018 Y NA
 3614252 3614253 Pmen_1054 Pmen_1055     FALSE 0.402 106.000 0.122 1.000 N NA
 3614253 3614254 Pmen_1055 Pmen_R0014     FALSE 0.173 55.000 0.000 NA   NA
 3614254 3614255 Pmen_R0014 Pmen_R0015     FALSE 0.163 57.000 0.000 NA   NA
 3614255 3614256 Pmen_R0015 Pmen_1056   ipk FALSE 0.424 27.000 0.000 NA   NA
 3614256 3614257 Pmen_1056 Pmen_1057 ipk lolB FALSE 0.107 261.000 0.072 1.000 N NA
 3614257 3614258 Pmen_1057 Pmen_1058 lolB   TRUE 0.952 0.000 0.072 1.000 N NA
 3614259 3614260 Pmen_1059 Pmen_1060 hemA prfA TRUE 0.985 -3.000 0.171 0.041 N NA
 3614260 3614261 Pmen_1060 Pmen_1061 prfA   TRUE 0.895 65.000 0.229 0.041 Y NA
 3614261 3614262 Pmen_1061 Pmen_1062     TRUE 0.932 -7.000 0.068 1.000 N NA
 3614262 3614263 Pmen_1062 Pmen_1063     TRUE 0.500 34.000 0.013 1.000 N NA
 3614263 3614264 Pmen_1063 Pmen_1064     FALSE 0.173 103.000 0.004 1.000   NA
 3614265 3614266 Pmen_1065 Pmen_1066     TRUE 0.992 -7.000 0.588 NA   NA
 3614266 3614267 Pmen_1066 Pmen_1067     TRUE 0.978 -13.000 0.311 1.000   NA
 3614267 3614268 Pmen_1067 Pmen_1068     TRUE 0.996 0.000 0.722 1.000   NA
 3614268 3614269 Pmen_1068 Pmen_1069     TRUE 0.987 -3.000 0.217 0.061   NA
 3614269 3614270 Pmen_1069 Pmen_1070     TRUE 0.993 -3.000 0.533 NA   NA
 3614270 3614271 Pmen_1070 Pmen_1071     TRUE 0.937 -3.000 0.048 NA   NA
 3614271 3614272 Pmen_1071 Pmen_1072     TRUE 0.834 -12.000 0.004 1.000 N NA
 3614272 3614273 Pmen_1072 Pmen_1073     TRUE 0.838 0.000 0.000 NA   NA
 3614273 3614274 Pmen_1073 Pmen_1074     FALSE 0.095 255.000 0.055 NA   NA
 3614274 3614275 Pmen_1074 Pmen_1075     TRUE 0.943 -3.000 0.060 NA   NA
 3614276 3614277 Pmen_1076 Pmen_1077   hemH TRUE 0.809 13.000 0.020 1.000   NA
 3614277 3614278 Pmen_1077 Pmen_1078 hemH   FALSE 0.083 165.000 0.000 1.000 N NA
 3614278 3614279 Pmen_1078 Pmen_1079     FALSE 0.108 132.000 0.000 NA   NA
 3614280 3614281 Pmen_1080 Pmen_1081     FALSE 0.131 80.000 0.000 1.000 N NA
 3614283 3614284 Pmen_1083 Pmen_1084     TRUE 0.463 24.000 0.000 NA   NA
 3614286 3614287 Pmen_1086 Pmen_1087     FALSE 0.307 55.000 0.025 NA   NA
 3614287 3614288 Pmen_1087 Pmen_1088     FALSE 0.119 87.000 0.000 NA   NA
 3614288 3614289 Pmen_1088 Pmen_1089     FALSE 0.107 100.000 0.000 NA N NA
 3614289 3614290 Pmen_1089 Pmen_1090     FALSE 0.137 69.000 0.000 1.000 N NA
 3614290 3614291 Pmen_1090 Pmen_1091     TRUE 0.484 25.000 0.000 1.000   NA
 3614291 3614292 Pmen_1091 Pmen_1092     TRUE 0.694 13.000 0.000 1.000   NA
 3614292 3614293 Pmen_1092 Pmen_1093     TRUE 0.999 12.000 0.875 0.013 Y NA
 3614293 3614294 Pmen_1093 Pmen_1094     TRUE 0.686 66.000 0.000 0.064 Y NA
 3614295 3614296 Pmen_1095 Pmen_1096     FALSE 0.126 79.000 0.000 NA   NA
 3614296 3614297 Pmen_1096 Pmen_1097     FALSE 0.145 63.000 0.000 NA   NA
 3614297 3614298 Pmen_1097 Pmen_1098     FALSE 0.232 155.000 0.000 0.085   NA
 3614298 3614299 Pmen_1098 Pmen_1099     FALSE 0.124 93.000 0.000 1.000 N NA
 3614299 3614300 Pmen_1099 Pmen_1100     FALSE 0.051 217.000 0.000 1.000   NA
 3614301 3614302 Pmen_1101 Pmen_1102     TRUE 0.738 32.000 0.115 NA N NA
 3614303 3614304 Pmen_1103 Pmen_1104     TRUE 0.842 -3.000 0.000 1.000 N NA
 3614305 3614306 Pmen_1105 Pmen_1106     TRUE 0.561 49.000 0.121 NA   NA
 3614306 3614307 Pmen_1106 Pmen_1107     TRUE 0.800 196.000 0.483 1.000 Y NA
 3614307 3614308 Pmen_1107 Pmen_1108     TRUE 0.650 67.000 0.033 1.000 Y NA
 3614308 3614309 Pmen_1108 Pmen_1109     TRUE 0.997 17.000 1.000 1.000 Y NA
 3614309 3614310 Pmen_1109 Pmen_1110   putA FALSE 0.014 456.000 0.000 1.000 N NA
 3614312 3614313 Pmen_1112 Pmen_1113     FALSE 0.018 360.000 0.000 NA   NA
 3614313 3614314 Pmen_1113 Pmen_1114     FALSE 0.063 194.000 0.000 1.000   NA
 3614314 3614315 Pmen_1114 Pmen_1115     TRUE 0.908 0.000 0.019 NA   NA
 3614316 3614317 Pmen_1116 Pmen_1117     FALSE 0.119 241.000 0.066 1.000 N NA
 3614320 3614321 Pmen_1120 Pmen_1121     TRUE 0.900 29.000 0.310 1.000 N NA
 3614325 3614326 Pmen_1125 Pmen_1126     TRUE 0.576 144.000 0.286 NA   NA
 3614327 3614328 Pmen_1127 Pmen_1128     FALSE 0.151 67.000 0.000 1.000   NA
 3614328 3614329 Pmen_1128 Pmen_1129     FALSE 0.134 200.000 0.043 1.000 N NA
 3614329 3614330 Pmen_1129 Pmen_1130     TRUE 0.996 -3.000 0.833 NA   NA
 3614330 3614331 Pmen_1130 Pmen_1131     TRUE 0.618 75.000 0.273 NA   NA
 3614331 3614332 Pmen_1131 Pmen_1132     TRUE 0.985 8.000 0.412 NA   NA
 3614332 3614333 Pmen_1132 Pmen_1133     FALSE 0.068 169.000 0.000 NA N NA
 3614333 3614334 Pmen_1133 Pmen_1134     FALSE 0.015 392.000 0.000 NA   NA
 3614334 3614335 Pmen_1134 Pmen_1135     TRUE 0.983 22.000 0.857 NA   NA
 3614335 3614336 Pmen_1135 Pmen_1136     TRUE 0.553 165.000 0.333 NA   NA
 3614337 3614338 Pmen_1137 Pmen_1138     TRUE 0.505 110.000 0.000 1.000 Y NA
 3614338 3614339 Pmen_1138 Pmen_1139     FALSE 0.422 181.000 0.019 1.000 Y NA
 3614339 3614340 Pmen_1139 Pmen_1140     TRUE 0.996 11.000 0.352 0.001 Y NA
 3614342 3614343 Pmen_1142 Pmen_1143     FALSE 0.114 118.000 0.000 NA   NA
 3614343 3614344 Pmen_1143 Pmen_1144     TRUE 0.979 -3.000 0.231 NA   NA
 3614347 3614348 Pmen_1147 Pmen_1148 glk   FALSE 0.171 57.000 0.000 1.000 N NA
 3614348 3614349 Pmen_1148 Pmen_1149     TRUE 0.999 -7.000 0.909 1.000 Y NA
 3614349 3614350 Pmen_1149 Pmen_1150     TRUE 0.469 203.000 0.367 1.000 N NA
 3614350 3614351 Pmen_1150 Pmen_1151     TRUE 0.865 172.000 0.367 0.064 Y NA
 3614351 3614352 Pmen_1151 Pmen_1152     TRUE 0.999 -7.000 0.816 0.064 Y NA
 3614352 3614353 Pmen_1152 Pmen_1153     TRUE 0.998 11.000 0.723 0.064 Y NA
 3614353 3614354 Pmen_1153 Pmen_1154     TRUE 0.786 119.000 0.108 0.084 Y NA
 3614354 3614355 Pmen_1154 Pmen_1155     TRUE 0.969 -6.000 0.000 1.000 Y NA
 3614359 3614360 Pmen_1159 Pmen_1160     FALSE 0.017 361.000 0.000 NA   NA
 3614363 3614364 Pmen_1163 Pmen_1164     TRUE 0.531 20.000 0.000 NA   NA
 3614364 3614365 Pmen_1164 Pmen_1165     TRUE 0.834 -3.000 0.000 NA   NA
 3614365 3614366 Pmen_1165 Pmen_1166     FALSE 0.111 125.000 0.000 NA   NA
 3614367 3614368 Pmen_1167 Pmen_1168     FALSE 0.144 74.000 0.000 1.000   NA
 3614368 3614369 Pmen_1168 Pmen_1169     FALSE 0.021 352.000 0.000 1.000   NA
 3614371 3614372 Pmen_1171 Pmen_1172     FALSE 0.129 70.000 0.000 NA   NA
 3614373 3614374 Pmen_1173 Pmen_1174     TRUE 0.990 -3.000 0.000 0.001 Y NA
 3614375 3614376 Pmen_1175 Pmen_1176     TRUE 0.600 58.000 0.000 1.000 Y NA
 3614376 3614377 Pmen_1176 Pmen_1177     TRUE 0.495 23.000 0.000 1.000 N NA
 3614378 3614379 Pmen_1178 Pmen_1179     FALSE 0.118 95.000 0.000 NA   NA
 3614381 3614382 Pmen_1181 Pmen_1182     TRUE 0.798 42.000 0.273 NA   NA
 3614382 3614383 Pmen_1182 Pmen_1183     TRUE 0.768 89.000 0.500 NA   NA
 3614383 3614384 Pmen_1183 Pmen_1184     TRUE 0.769 87.000 0.500 NA   NA
 3614384 3614385 Pmen_1184 Pmen_1185     TRUE 0.661 93.000 0.333 NA   NA
 3614386 3614387 Pmen_1186 Pmen_1187     TRUE 0.987 -3.000 0.346 NA   NA
 3614388 3614389 Pmen_1188 Pmen_R0016     FALSE 0.059 188.000 0.000 NA   NA
 3614391 3614392 Pmen_1190 Pmen_1191     FALSE 0.137 66.000 0.000 NA   NA
 3614392 3614393 Pmen_1191 Pmen_1192     FALSE 0.287 102.000 0.052 NA   NA
 3614393 3614394 Pmen_1192 Pmen_1193     TRUE 0.690 40.000 0.154 NA   NA
 3614394 3614395 Pmen_1193 Pmen_1194     TRUE 0.919 -3.000 0.029 NA   NA
 3614395 3614396 Pmen_1194 Pmen_1195     FALSE 0.375 32.000 0.000 NA   NA
 3614396 3614397 Pmen_1195 Pmen_R0017     FALSE 0.027 281.000 0.000 NA   NA
 3614397 3614398 Pmen_R0017 Pmen_R0018     TRUE 0.841 -1.000 0.000 NA   NA
 3614403 3614404 Pmen_1200 Pmen_1201     FALSE 0.309 166.000 0.132 NA   NA
 3614404 3614405 Pmen_1201 Pmen_1202     FALSE 0.354 85.000 0.082 NA   NA
 3614405 3614406 Pmen_1202 Pmen_1203     FALSE 0.241 142.000 0.041 NA   NA
 3614406 3614407 Pmen_1203 Pmen_1204     TRUE 0.692 12.000 0.000 NA   NA
 3614407 3614408 Pmen_1204 Pmen_1205     TRUE 0.962 -3.000 0.120 NA   NA
 3614408 3614409 Pmen_1205 Pmen_1206     FALSE 0.129 71.000 0.000 NA   NA
 3614410 3614411 Pmen_1207 Pmen_1208     FALSE 0.048 210.000 0.000 NA   NA
 3614411 3614412 Pmen_1208 Pmen_1209     TRUE 0.508 200.000 0.429 NA N NA
 3614412 3614413 Pmen_1209 Pmen_1210     FALSE 0.108 142.000 0.000 1.000 N NA
 3614413 3614414 Pmen_1210 Pmen_1211     FALSE 0.022 312.000 0.000 NA   NA
 3614414 3614415 Pmen_1211 Pmen_1212     TRUE 0.968 10.000 0.250 NA   NA
 3614415 3614416 Pmen_1212 Pmen_1213     TRUE 0.737 67.000 0.400 NA   NA
 3614416 3614417 Pmen_1213 Pmen_1214     TRUE 0.776 35.000 0.167 1.000   NA
 3614418 3614419 Pmen_1215 Pmen_1216     TRUE 0.801 111.000 0.123 0.070 Y NA
 3614419 3614420 Pmen_1216 Pmen_1217     FALSE 0.155 183.000 0.037 1.000 N NA
 3614420 3614421 Pmen_1217 Pmen_1218     TRUE 0.949 23.000 0.130 1.000 Y NA
 3614421 3614422 Pmen_1218 Pmen_1219     TRUE 0.829 14.000 0.039 1.000 N NA
 3614422 3614423 Pmen_1219 Pmen_1220     FALSE 0.017 387.000 0.000 1.000 N NA
 3614423 3614424 Pmen_1220 Pmen_1221     TRUE 0.993 -3.000 0.411 0.100 N NA
 3614425 3614426 Pmen_1222 Pmen_1223     FALSE 0.271 88.000 0.041 NA   NA
 3614426 3614427 Pmen_1223 Pmen_1224     FALSE 0.117 98.000 0.000 NA   NA
 3614428 3614429 Pmen_1225 Pmen_1226     FALSE 0.139 82.000 0.000 1.000   NA
 3614429 3614430 Pmen_1226 Pmen_1227     TRUE 0.950 -13.000 0.143 1.000   NA
 3614430 3614431 Pmen_1227 Pmen_1228     TRUE 0.936 4.000 0.070 NA   NA
 3614431 3614432 Pmen_1228 Pmen_1229     TRUE 0.994 3.000 0.619 NA   NA
 3614433 3614434 Pmen_1230 Pmen_1231     TRUE 0.734 15.000 0.011 1.000 N NA
 3614434 3614435 Pmen_1231 Pmen_1232     FALSE 0.102 198.000 0.022 1.000 N NA
 3614435 3614436 Pmen_1232 Pmen_1233   minE FALSE 0.041 268.000 0.008 NA N NA
 3614436 3614437 Pmen_1233 Pmen_1234 minE   TRUE 0.998 -3.000 0.618 NA Y NA
 3614437 3614438 Pmen_1234 Pmen_1235   minC TRUE 0.899 103.000 0.466 1.000 Y NA
 3614439 3614440 Pmen_1236 Pmen_1237     TRUE 0.635 37.000 0.069 1.000   NA
 3614441 3614442 Pmen_1238 Pmen_1239     FALSE 0.185 113.000 0.014 NA   NA
 3614442 3614443 Pmen_1239 Pmen_1240     TRUE 0.967 -7.000 0.204 NA   NA
 3614443 3614444 Pmen_1240 Pmen_1241     FALSE 0.120 86.000 0.000 NA   NA
 3614444 3614445 Pmen_1241 Pmen_1242     FALSE 0.143 64.000 0.000 NA   NA
 3614446 3614447 Pmen_1243 Pmen_1244     FALSE 0.035 245.000 0.000 NA   NA
 3614447 3614448 Pmen_1244 Pmen_1245     FALSE 0.391 110.000 0.107 1.000   NA
 3614448 3614449 Pmen_1245 Pmen_1246     TRUE 0.612 75.000 0.267 NA   NA
 3614449 3614450 Pmen_1246 Pmen_1247     TRUE 0.941 10.000 0.133 NA   NA
 3614450 3614451 Pmen_1247 Pmen_1248     FALSE 0.066 180.000 0.000 NA   NA
 3614451 3614452 Pmen_1248 Pmen_1249     FALSE 0.122 83.000 0.000 NA   NA
 3614452 3614453 Pmen_1249 Pmen_1250     FALSE 0.013 457.000 0.000 NA   NA
 3614453 3614454 Pmen_1250 Pmen_1251     FALSE 0.064 183.000 0.000 NA   NA
 3614455 3614456 Pmen_1252 Pmen_1253     FALSE 0.124 95.000 0.000 1.000 N NA
 3614457 3614458 Pmen_1254 Pmen_1255     TRUE 0.817 3.000 0.000 NA   NA
 3614458 3614459 Pmen_1255 Pmen_1256     TRUE 0.764 -13.000 0.000 NA   NA
 3614460 3614461 Pmen_1257 Pmen_1258     TRUE 0.646 21.000 0.013 NA   NA
 3614464 3614465 Pmen_1261 Pmen_1262     TRUE 0.834 -3.000 0.000 NA   NA
 3614466 3614467 Pmen_1263 Pmen_1264     FALSE 0.075 173.000 0.000 1.000 N NA
 3614467 3614468 Pmen_1264 Pmen_1265     FALSE 0.124 98.000 0.000 1.000 N NA
 3614468 3614469 Pmen_1265 Pmen_1266     FALSE 0.306 115.000 0.000 0.060   NA
 3614469 3614470 Pmen_1266 Pmen_1267     FALSE 0.128 72.000 0.000 NA   NA
 3614471 3614472 Pmen_1268 Pmen_1269 aspS   FALSE 0.257 106.000 0.039 NA   NA
 3614472 3614473 Pmen_1269 Pmen_1270   ruvC TRUE 0.536 154.000 0.277 NA   NA
 3614473 3614474 Pmen_1270 Pmen_1271 ruvC ruvA TRUE 0.993 19.000 0.451 0.008 Y NA
 3614474 3614475 Pmen_1271 Pmen_1272 ruvA ruvB TRUE 0.997 14.000 0.549 0.002 Y NA
 3614475 3614476 Pmen_1272 Pmen_1273 ruvB   TRUE 0.481 54.000 0.082 1.000   NA
 3614476 3614477 Pmen_1273 Pmen_1274     TRUE 0.993 3.000 0.593 1.000   NA
 3614477 3614478 Pmen_1274 Pmen_1275     TRUE 0.989 28.000 0.556 0.083 Y NA
 3614478 3614479 Pmen_1275 Pmen_1276     TRUE 0.992 0.000 0.460 1.000   NA
 3614479 3614480 Pmen_1276 Pmen_1277   tolB TRUE 0.985 6.000 0.215 0.008   NA
 3614480 3614481 Pmen_1277 Pmen_1278 tolB   TRUE 0.880 53.000 0.592 1.000 N NA
 3614481 3614482 Pmen_1278 Pmen_1279     TRUE 0.977 7.000 0.278 1.000   NA
 3614482 3614483 Pmen_1279 Pmen_1280     FALSE 0.194 183.000 0.059 1.000   NA
 3614483 3614484 Pmen_1280 Pmen_1281     TRUE 0.981 3.000 0.270 1.000   NA
 3614484 3614485 Pmen_1281 Pmen_R0019     FALSE 0.156 59.000 0.000 NA   NA
 3614485 3614486 Pmen_R0019 Pmen_1282     FALSE 0.105 138.000 0.000 NA   NA
 3614487 3614488 Pmen_1283 Pmen_1284     FALSE 0.337 133.000 0.089 NA   NA
 3614489 3614490 Pmen_1285 Pmen_1286     FALSE 0.327 38.000 0.000 1.000   NA
 3614492 3614493 Pmen_1288 Pmen_1289     FALSE 0.153 60.000 0.000 NA   NA
 3614498 3614499 Pmen_1294 Pmen_1295     TRUE 0.944 6.000 0.095 1.000   NA
 3614499 3614500 Pmen_1295 Pmen_1296     TRUE 0.932 11.000 0.118 1.000   NA
 3614501 3614502 Pmen_1297 Pmen_1298     TRUE 0.797 136.000 0.600 NA   NA
 3614502 3614503 Pmen_1298 Pmen_1299     FALSE 0.047 219.000 0.000 1.000 N NA
 3614503 3614504 Pmen_1299 Pmen_1300   motB TRUE 0.996 10.000 0.566 1.000 Y NA
 3614504 3614505 Pmen_1300 Pmen_1301 motB   FALSE 0.166 62.000 0.000 1.000   NA
 3614505 3614506 Pmen_1301 Pmen_1302     TRUE 0.909 0.000 0.019 NA   NA
 3614507 3614508 Pmen_1303 Pmen_1304     FALSE 0.118 95.000 0.000 NA   NA
 3614508 3614509 Pmen_1304 Pmen_1305     FALSE 0.245 57.000 0.012 NA   NA
 3614511 3614512 Pmen_1307 Pmen_1308     FALSE 0.243 44.000 0.000 NA   NA
 3614514 3614515 Pmen_1310 Pmen_1311 mgsA   TRUE 0.937 15.000 0.006 1.000 Y NA
 3614518 3614519 Pmen_R0020 Pmen_R0021     TRUE 0.598 16.000 0.000 NA   NA
 3614519 3614520 Pmen_R0021 Pmen_1314     FALSE 0.060 187.000 0.000 NA   NA
 3614520 3614521 Pmen_1314 Pmen_1315     FALSE 0.020 338.000 0.000 NA   NA
 3614523 3614524 Pmen_1317 Pmen_1318     TRUE 0.993 3.000 0.562 NA   NA
 3614524 3614525 Pmen_1318 Pmen_1319     TRUE 0.980 -7.000 0.312 NA   NA
 3614526 3614527 Pmen_1320 Pmen_1321     FALSE 0.234 104.000 0.029 1.000 N NA
 3614528 3614529 Pmen_1322 Pmen_1323     FALSE 0.243 156.000 0.000 0.059 N NA
 3614529 3614530 Pmen_1323 Pmen_1324     TRUE 0.897 154.000 0.551 1.000 Y NA
 3614533 3614534 Pmen_1327 Pmen_1328     TRUE 0.994 0.000 0.222 1.000 Y NA
 3614534 3614535 Pmen_1328 Pmen_1329     TRUE 0.998 -3.000 0.360 0.063 Y NA
 3614535 3614536 Pmen_1329 Pmen_1330     TRUE 0.996 -13.000 0.774 0.063   NA
 3614536 3614537 Pmen_1330 Pmen_1331     TRUE 0.985 -3.000 0.290 1.000   NA
 3614537 3614538 Pmen_1331 Pmen_1332     TRUE 0.937 33.000 0.500 1.000   NA
 3614539 3614540 Pmen_1333 Pmen_1334     FALSE 0.058 189.000 0.000 NA   NA
 3614540 3614541 Pmen_1334 Pmen_1335     FALSE 0.357 34.000 0.000 NA   NA
 3614541 3614542 Pmen_1335 Pmen_1336     FALSE 0.077 166.000 0.000 NA   NA
 3614549 3614550 Pmen_1343 Pmen_1344     TRUE 0.540 70.000 0.000 1.000 Y NA
 3614550 3614551 Pmen_1344 Pmen_1345     TRUE 0.584 186.000 0.002 0.001 Y NA
 3614551 3614552 Pmen_1345 Pmen_1346     TRUE 0.990 10.000 0.249 1.000 Y NA
 3614556 3614557 Pmen_1350 Pmen_1351     FALSE 0.108 142.000 0.000 1.000 N NA
 3614557 3614558 Pmen_1351 Pmen_1352     FALSE 0.105 107.000 0.000 NA N NA
 3614558 3614559 Pmen_1352 Pmen_1353     FALSE 0.053 190.000 0.000 NA N NA
 3614559 3614560 Pmen_1353 Pmen_R0022     FALSE 0.015 407.000 0.000 NA   NA
 3614560 3614561 Pmen_R0022 Pmen_1354     FALSE 0.120 86.000 0.000 NA   NA
 3614561 3614562 Pmen_1354 Pmen_1355     FALSE 0.015 392.000 0.000 NA   NA
 3614562 3614563 Pmen_1355 Pmen_1356     TRUE 0.967 4.000 0.189 NA   NA
 3614563 3614564 Pmen_1356 Pmen_1357     TRUE 0.967 0.000 0.148 NA   NA
 3614564 3614565 Pmen_1357 Pmen_1358     FALSE 0.212 93.000 0.019 1.000 N NA
 3614565 3614566 Pmen_1358 Pmen_1359     TRUE 0.825 167.000 0.835 NA   NA
 3614566 3614567 Pmen_1359 Pmen_1360     TRUE 0.994 11.000 0.931 NA   NA
 3614567 3614568 Pmen_1360 Pmen_1361     FALSE 0.140 81.000 0.000 1.000   NA
 3614569 3614570 Pmen_1362 Pmen_1363     TRUE 0.993 -3.000 0.545 NA   NA
 3614571 3614572 Pmen_1364 Pmen_1365     TRUE 0.999 -3.000 0.797 1.000 Y NA
 3614572 3614573 Pmen_1365 Pmen_1366     TRUE 0.720 461.000 0.719 0.063 Y NA
 3614576 3614577 Pmen_1369 Pmen_1370     FALSE 0.126 79.000 0.000 NA   NA
 3614578 3614579 Pmen_1371 Pmen_1372     FALSE 0.416 29.000 0.000 1.000 N NA
 3614579 3614580 Pmen_1372 Pmen_1373     FALSE 0.299 132.000 0.000 0.043 N NA
 3614580 3614581 Pmen_1373 Pmen_1374     TRUE 0.964 116.000 0.627 0.002 Y NA
 3614581 3614582 Pmen_1374 Pmen_1375     TRUE 0.813 95.000 0.242 1.000 Y NA
 3614582 3614583 Pmen_1375 Pmen_1376     TRUE 0.760 7.000 0.000 NA N NA
 3614583 3614584 Pmen_1376 Pmen_1377     FALSE 0.108 98.000 0.000 NA N NA
 3614586 3614587 Pmen_1379 Pmen_1380     TRUE 0.704 11.000 0.000 NA N NA
 3614589 3614590 Pmen_1382 Pmen_1383     FALSE 0.056 193.000 0.000 NA   NA
 3614590 3614591 Pmen_1383 Pmen_1384   livG TRUE 0.999 4.000 0.967 0.020 Y NA
 3614591 3614592 Pmen_1384 Pmen_1385 livG livM TRUE 0.998 -3.000 0.574 1.000 Y NA
 3614592 3614593 Pmen_1385 Pmen_1386 livM   TRUE 0.999 -3.000 0.574 0.063 Y NA
 3614593 3614594 Pmen_1386 Pmen_1387     TRUE 0.608 118.000 0.033 1.000 Y NA
 3614595 3614596 Pmen_1388 Pmen_1389     FALSE 0.270 93.000 0.041 NA   NA
 3614597 3614598 Pmen_1390 Pmen_1391     FALSE 0.106 171.000 0.009 NA N NA
 3614598 3614599 Pmen_1391 Pmen_1392     TRUE 0.948 -3.000 0.068 1.000 N NA
 3614600 3614601 Pmen_1393 Pmen_1394     FALSE 0.188 116.000 0.013 1.000 N NA
 3614601 3614602 Pmen_1394 Pmen_1395     TRUE 0.577 72.000 0.006 1.000 Y NA
 3614602 3614603 Pmen_1395 Pmen_1396     FALSE 0.136 70.000 0.000 1.000 N NA
 3614604 3614605 Pmen_1397 Pmen_1398     FALSE 0.177 112.000 0.012 NA   NA
 3614605 3614606 Pmen_1398 Pmen_1399     TRUE 0.961 -3.000 0.109 1.000 N NA
 3614606 3614607 Pmen_1399 Pmen_1400     TRUE 0.999 -3.000 0.908 0.062 Y NA
 3614607 3614608 Pmen_1400 Pmen_1401     TRUE 0.999 3.000 0.924 0.062 Y NA
 3614608 3614609 Pmen_1401 Pmen_1402     TRUE 0.966 140.000 0.814 0.062 Y NA
 3614609 3614610 Pmen_1402 Pmen_1403     TRUE 0.999 -3.000 0.537 0.020 Y NA
 3614610 3614611 Pmen_1403 Pmen_1404     TRUE 0.999 -3.000 0.564 0.062 Y NA
 3614611 3614612 Pmen_1404 Pmen_1405   metG FALSE 0.295 120.000 0.055 1.000 N NA
 3614615 3614616 Pmen_1408 Pmen_1409 dcd   FALSE 0.152 137.000 0.007 NA   NA
 3614617 3614618 Pmen_1410 Pmen_1411 nadE   TRUE 0.969 11.000 0.033 1.000 Y NA
 3614618 3614619 Pmen_1411 Pmen_1412     TRUE 0.941 -3.000 0.053 1.000 N NA
 3614621 3614622 Pmen_1414 Pmen_1415     FALSE 0.210 172.000 0.064 NA   NA
 3614622 3614623 Pmen_1415 Pmen_1416     TRUE 0.899 8.000 0.038 NA   NA
 3614623 3614624 Pmen_1416 Pmen_1417     TRUE 0.957 6.000 0.163 NA   NA
 3614626 3614627 Pmen_1419 Pmen_1420     FALSE 0.134 67.000 0.000 NA   NA
 3614627 3614628 Pmen_1420 Pmen_1421     TRUE 0.986 5.000 0.407 NA   NA
 3614629 3614630 Pmen_1422 Pmen_1423     TRUE 0.667 132.000 0.000 0.008 Y NA
 3614630 3614631 Pmen_1423 Pmen_1424     FALSE 0.299 70.000 0.045 NA   NA
 3614631 3614632 Pmen_1424 Pmen_1425     TRUE 0.946 -7.000 0.106 NA   NA
 3614635 3614636 Pmen_1428 Pmen_1429     TRUE 0.987 -3.000 0.069 1.000 Y NA
 3614636 3614637 Pmen_1429 Pmen_1430     TRUE 0.989 -3.000 0.020 0.068 Y NA
 3614637 3614638 Pmen_1430 Pmen_1431     TRUE 0.983 0.000 0.026 1.000 Y NA
 3614638 3614639 Pmen_1431 Pmen_1432     TRUE 0.999 -3.000 0.896 0.006 Y NA
 3614639 3614640 Pmen_1432 Pmen_1433     TRUE 0.995 0.000 0.123 0.006 Y NA
 3614641 3614642 Pmen_1434 Pmen_1435     TRUE 0.846 83.000 0.667 1.000 N NA
 3614642 3614643 Pmen_1435 Pmen_1436     TRUE 0.523 35.000 0.023 1.000 N NA
 3614643 3614644 Pmen_1436 Pmen_1437     FALSE 0.186 74.000 0.006 1.000 N NA
 3614644 3614645 Pmen_1437 Pmen_1438     FALSE 0.228 195.000 0.120 1.000 N NA
 3614645 3614646 Pmen_1438 Pmen_1439     TRUE 0.729 56.000 0.047 1.000 Y NA
 3614646 3614647 Pmen_1439 Pmen_1440     FALSE 0.307 125.000 0.065 1.000 N NA
 3614647 3614648 Pmen_1440 Pmen_1441     FALSE 0.017 380.000 0.000 1.000 N NA
 3614648 3614649 Pmen_1441 Pmen_1442     TRUE 0.999 2.000 0.881 0.006 Y NA
 3614649 3614650 Pmen_1442 Pmen_1443     TRUE 0.999 -3.000 0.976 0.006 Y NA
 3614650 3614651 Pmen_1443 Pmen_1444     TRUE 0.999 -3.000 0.944 1.000 Y NA
 3614651 3614652 Pmen_1444 Pmen_1445     TRUE 0.999 -15.000 0.937 0.068 Y NA
 3614652 3614653 Pmen_1445 Pmen_1446     TRUE 0.997 13.000 0.937 1.000 Y NA
 3614653 3614654 Pmen_1446 Pmen_1447     FALSE 0.186 95.000 0.016 NA N NA
 3614654 3614655 Pmen_1447 Pmen_1448     TRUE 0.579 17.000 0.000 NA   NA
 3614655 3614656 Pmen_1448 Pmen_1449     TRUE 0.834 -3.000 0.000 NA   NA
 3614657 3614658 Pmen_1450 Pmen_1451     FALSE 0.135 86.000 0.000 1.000   NA
 3614658 3614659 Pmen_1451 Pmen_1452     FALSE 0.084 159.000 0.000 NA   NA
 3614661 3614662 Pmen_1454 Pmen_1455     TRUE 0.974 -16.000 0.286 NA   NA
 3614662 3614663 Pmen_1455 Pmen_1456     TRUE 0.996 2.000 0.857 NA   NA
 3614663 3614664 Pmen_1456 Pmen_1457     TRUE 0.637 67.000 0.277 NA   NA
 3614664 3614665 Pmen_1457 Pmen_1458     TRUE 0.770 32.000 0.128 1.000   NA
 3614666 3614667 Pmen_1459 Pmen_1460     TRUE 0.991 -3.000 0.161 1.000 Y NA
 3614668 3614669 Pmen_1461 Pmen_1462     TRUE 0.543 66.000 0.000 NA Y NA
 3614669 3614670 Pmen_1462 Pmen_1463     FALSE 0.406 47.000 0.034 NA   NA
 3614671 3614672 Pmen_1464 Pmen_1465     TRUE 0.872 -16.000 0.027 NA   NA
 3614674 3614675 Pmen_1467 Pmen_1468 algU   TRUE 0.962 31.000 0.705 NA N NA
 3614675 3614676 Pmen_1468 Pmen_1469     TRUE 0.998 9.000 0.856 NA Y NA
 3614676 3614677 Pmen_1469 Pmen_1470     TRUE 0.998 -3.000 0.609 NA Y NA
 3614677 3614678 Pmen_1470 Pmen_1471     TRUE 0.788 36.000 0.206 NA N NA
 3614678 3614679 Pmen_1471 Pmen_1472     FALSE 0.175 152.000 0.020 1.000 N NA
 3614679 3614680 Pmen_1472 Pmen_1473     TRUE 0.962 7.000 0.187 1.000 N NA
 3614680 3614681 Pmen_1473 Pmen_1474     FALSE 0.420 89.000 0.133 NA   NA
 3614681 3614682 Pmen_1474 Pmen_1475   rnc TRUE 0.924 -3.000 0.033 NA   NA
 3614682 3614683 Pmen_1475 Pmen_1476 rnc era TRUE 0.976 -7.000 0.127 0.053   NA
 3614683 3614684 Pmen_1476 Pmen_1477 era recO TRUE 0.488 58.000 0.109 1.000   NA
 3614684 3614685 Pmen_1477 Pmen_1478 recO   TRUE 0.960 -7.000 0.166 1.000 N NA
 3614688 3614689 Pmen_1481 Pmen_1482     TRUE 0.985 -3.000 0.315 NA   NA
 3614689 3614690 Pmen_1482 Pmen_1483     FALSE 0.210 101.000 0.017 1.000   NA
 3614693 3614694 Pmen_1486 Pmen_1487     TRUE 0.743 36.000 0.156 NA   NA
 3614694 3614695 Pmen_1487 Pmen_1488     TRUE 0.973 -3.000 0.188 NA   NA
 3614695 3614696 Pmen_1488 Pmen_1489     FALSE 0.050 202.000 0.000 NA   NA
 3614696 3614697 Pmen_1489 Pmen_1490     FALSE 0.046 214.000 0.000 NA   NA
 3614697 3614698 Pmen_1490 Pmen_1491     TRUE 0.958 -13.000 0.185 NA   NA
 3614698 3614699 Pmen_1491 Pmen_1492     TRUE 0.962 15.000 0.353 NA   NA
 3614700 3614701 Pmen_1493 Pmen_1494     TRUE 0.985 -3.000 0.046 1.000 Y NA
 3614702 3614703 Pmen_1495 Pmen_1496     FALSE 0.221 406.000 0.000 0.001 Y NA
 3614704 3614705 Pmen_1497 Pmen_1498     TRUE 0.945 -3.000 0.065 NA   NA
 3614706 3614707 Pmen_1499 Pmen_1500     TRUE 0.650 116.000 0.000 0.053 Y NA
 3614707 3614708 Pmen_1500 Pmen_1501     FALSE 0.427 149.000 0.179 1.000 N NA
 3614708 3614709 Pmen_1501 Pmen_1502     TRUE 0.659 45.000 0.042 0.059   NA
 3614709 3614710 Pmen_1502 Pmen_1503     FALSE 0.026 284.000 0.000 NA   NA
 3614712 3614713 Pmen_1505 Pmen_1506     FALSE 0.039 233.000 0.000 NA   NA
 3614714 3614715 Pmen_1507 Pmen_1508     FALSE 0.011 657.000 0.000 NA   NA
 3614715 3614716 Pmen_1508 Pmen_1509     TRUE 0.721 12.000 0.000 1.000   NA
 3614717 3614718 Pmen_1510 Pmen_1511     FALSE 0.120 117.000 0.000 1.000 N NA
 3614718 3614719 Pmen_1511 Pmen_1512     FALSE 0.211 49.000 0.000 1.000 N NA
 3614720 3614721 Pmen_1513 Pmen_1514     FALSE 0.150 61.000 0.000 NA   NA
 3614722 3614723 Pmen_1515 Pmen_1516     FALSE 0.137 66.000 0.000 NA   NA
 3614724 3614725 Pmen_1517 Pmen_1518     FALSE 0.338 64.000 0.000 0.068 N NA
 3614726 3614727 Pmen_1519 Pmen_1520     FALSE 0.118 92.000 0.000 NA   NA
 3614727 3614728 Pmen_1520 Pmen_1521     TRUE 0.552 19.000 0.000 NA   NA
 3614728 3614729 Pmen_1521 Pmen_1522     TRUE 0.921 14.000 0.167 1.000   NA
 3614729 3614730 Pmen_1522 Pmen_1523     TRUE 0.700 196.000 0.689 NA   NA
 3614730 3614731 Pmen_1523 Pmen_1524     FALSE 0.072 172.000 0.000 NA   NA
 3614731 3614732 Pmen_1524 Pmen_1525     FALSE 0.066 180.000 0.000 NA   NA
 3614733 3614734 Pmen_1526 Pmen_1527     FALSE 0.137 66.000 0.000 NA   NA
 3614734 3614735 Pmen_1527 Pmen_1528     FALSE 0.133 76.000 0.000 1.000 N NA
 3614736 3614737 Pmen_1529 Pmen_1530     TRUE 0.616 47.000 0.136 1.000   NA
 3614741 3614742 Pmen_1534 Pmen_1535     FALSE 0.341 81.000 0.071 NA   NA
 3614743 3614744 Pmen_1536 Pmen_1537     FALSE 0.114 119.000 0.000 NA   NA
 3614744 3614745 Pmen_1537 Pmen_1538     FALSE 0.057 191.000 0.000 NA   NA
 3614745 3614746 Pmen_1538 Pmen_1539     TRUE 0.994 3.000 0.667 NA   NA
 3614746 3614747 Pmen_1539 Pmen_1540     FALSE 0.095 152.000 0.000 NA   NA
 3614748 3614749 Pmen_1541 Pmen_1542     TRUE 0.990 2.000 0.143 NA Y NA
 3614750 3614751 Pmen_1543 Pmen_1544     TRUE 0.976 0.000 0.000 1.000 Y NA
 3614752 3614753 Pmen_1545 Pmen_1546     FALSE 0.286 72.000 0.038 1.000 N NA
 3614753 3614754 Pmen_1546 Pmen_1547     TRUE 0.960 -6.000 0.160 NA   NA
 3614755 3614756 Pmen_1548 Pmen_1549     TRUE 0.531 20.000 0.000 NA   NA
 3614756 3614757 Pmen_1549 Pmen_1550     TRUE 0.834 -3.000 0.000 NA   NA
 3614757 3614758 Pmen_1550 Pmen_1551     FALSE 0.083 161.000 0.000 NA   NA
 3614758 3614759 Pmen_1551 Pmen_1552     FALSE 0.105 139.000 0.000 NA   NA
 3614760 3614761 Pmen_1553 Pmen_1554     TRUE 0.949 22.000 0.406 NA   NA
 3614761 3614762 Pmen_1554 Pmen_1555     TRUE 0.997 -3.000 0.914 NA   NA
 3614762 3614763 Pmen_1555 Pmen_1556     TRUE 0.976 6.000 0.271 NA   NA
 3614765 3614766 Pmen_1558 Pmen_1559     TRUE 0.995 3.000 0.352 1.000 Y NA
 3614766 3614767 Pmen_1559 Pmen_1560     TRUE 0.916 46.000 0.365 0.001 N NA
 3614770 3614771 Pmen_1563 Pmen_1564     FALSE 0.375 238.000 0.000 0.021 Y NA
 3614771 3614772 Pmen_1564 Pmen_1565     TRUE 0.981 23.000 0.400 1.000 Y NA
 3614772 3614773 Pmen_1565 Pmen_1566     TRUE 0.996 0.000 0.375 1.000 Y NA
 3614773 3614774 Pmen_1566 Pmen_1567     TRUE 0.994 11.000 0.250 0.013 Y NA
 3614774 3614775 Pmen_1567 Pmen_1568     TRUE 0.982 14.000 0.091 0.013 Y NA
 3614775 3614776 Pmen_1568 Pmen_1569     TRUE 0.882 14.000 0.091 NA   NA
 3614776 3614777 Pmen_1569 Pmen_1570     TRUE 0.995 2.000 0.667 NA   NA
 3614777 3614778 Pmen_1570 Pmen_1571     TRUE 0.956 22.000 0.154 1.000 Y NA
 3614779 3614780 Pmen_1572 Pmen_1573     FALSE 0.335 156.000 0.116 1.000   NA
 3614781 3614782 Pmen_1574 Pmen_1575     FALSE 0.013 463.000 0.000 NA   NA
 3614783 3614784 Pmen_1576 Pmen_1577     TRUE 0.702 19.000 0.019 NA   NA
 3614785 3614786 Pmen_1578 Pmen_1579     FALSE 0.325 152.000 0.103 NA   NA
 3614787 3614788 Pmen_1580 Pmen_1581 fadB fadA TRUE 0.984 31.000 0.607 1.000 Y NA
 3614788 3614789 Pmen_1581 Pmen_1582 fadA   FALSE 0.346 74.000 0.070 NA   NA
 3614789 3614790 Pmen_1582 Pmen_1583     FALSE 0.163 105.000 0.007 NA   NA
 3614790 3614791 Pmen_1583 Pmen_1584     FALSE 0.134 158.000 0.011 NA   NA
 3614791 3614792 Pmen_1584 Pmen_1585     TRUE 0.687 81.000 0.348 NA   NA
 3614793 3614794 Pmen_1586 Pmen_1587     TRUE 0.939 10.000 0.122 1.000 N NA
 3614795 3614796 Pmen_1588 Pmen_1589     TRUE 0.570 48.000 0.121 NA   NA
 3614796 3614797 Pmen_1589 Pmen_1590     TRUE 0.872 11.000 0.038 NA   NA
 3614797 3614798 Pmen_1590 Pmen_1591     TRUE 0.836 11.000 0.018 1.000 N NA
 3614799 3614800 Pmen_1592 Pmen_1593     TRUE 0.891 12.000 0.071 NA   NA
 3614801 3614802 Pmen_1594 Pmen_1595     FALSE 0.022 320.000 0.000 1.000 N NA
 3614802 3614803 Pmen_1595 Pmen_1596     TRUE 0.999 4.000 0.618 0.002 Y NA
 3614803 3614804 Pmen_1596 Pmen_1597     TRUE 0.998 -7.000 0.538 0.002 Y NA
 3614804 3614805 Pmen_1597 Pmen_1598     TRUE 0.996 3.000 0.188 0.002 Y NA
 3614805 3614806 Pmen_1598 Pmen_1599     TRUE 0.997 0.000 0.240 0.002 Y NA
 3614806 3614807 Pmen_1599 Pmen_1600     TRUE 0.997 16.000 0.700 0.002 Y NA
 3614807 3614808 Pmen_1600 Pmen_1601     TRUE 0.968 4.000 0.189 1.000 N NA
 3614808 3614809 Pmen_1601 Pmen_1602     TRUE 0.965 -3.000 0.137 NA   NA
 3614809 3614810 Pmen_1602 Pmen_1603     FALSE 0.401 97.000 0.121 NA   NA
 3614811 3614812 Pmen_1604 Pmen_1605     TRUE 0.972 -3.000 0.185 NA   NA
 3614812 3614813 Pmen_1605 Pmen_1606     TRUE 0.955 20.000 0.407 NA   NA
 3614814 3614815 Pmen_1607 Pmen_1608     TRUE 0.946 -7.000 0.025 0.081 N NA
 3614815 3614816 Pmen_1608 Pmen_1609     TRUE 0.996 0.000 0.620 0.081 N NA
 3614818 3614819 Pmen_1611 Pmen_1612     FALSE 0.311 73.000 0.045 1.000   NA
 3614819 3614820 Pmen_1612 Pmen_1613     TRUE 0.999 -3.000 0.746 0.081 Y NA
 3614820 3614821 Pmen_1613 Pmen_1614   lpxK TRUE 0.957 1.000 0.096 1.000 N NA
 3614821 3614822 Pmen_1614 Pmen_1615 lpxK   TRUE 0.908 23.000 0.263 NA   NA
 3614822 3614823 Pmen_1615 Pmen_1616     TRUE 0.981 1.000 0.265 NA   NA
 3614823 3614824 Pmen_1616 Pmen_1617     TRUE 0.942 0.000 0.050 1.000 N NA
 3614824 3614825 Pmen_1617 Pmen_1618   murB TRUE 0.940 -3.000 0.050 1.000 N NA
 3614827 3614828 Pmen_1620 Pmen_1621     TRUE 0.986 -7.000 0.389 1.000   NA
 3614828 3614829 Pmen_1621 Pmen_1622     TRUE 0.851 -10.000 0.006 1.000   NA
 3614831 3614832 Pmen_1624 Pmen_1625   rpmF TRUE 0.983 14.000 0.599 NA   NA
 3614832 3614833 Pmen_1625 Pmen_1626 rpmF   TRUE 0.916 34.000 0.418 1.000 N NA
 3614833 3614834 Pmen_1626 Pmen_1627     TRUE 0.823 126.000 0.106 0.003 Y NA
 3614834 3614835 Pmen_1627 Pmen_1628   fabG TRUE 0.990 24.000 0.432 0.003 Y NA
 3614835 3614836 Pmen_1628 Pmen_1629 fabG   TRUE 0.784 231.000 0.321 0.003 Y NA
 3614836 3614837 Pmen_1629 Pmen_1630     TRUE 0.862 111.000 0.346 1.000 Y NA
 3614837 3614838 Pmen_1630 Pmen_1631     TRUE 0.986 0.000 0.187 0.042 N NA
 3614838 3614839 Pmen_1631 Pmen_1632     TRUE 0.969 4.000 0.204 NA   NA
 3614839 3614840 Pmen_1632 Pmen_1633     TRUE 0.960 10.000 0.209 NA   NA
 3614840 3614841 Pmen_1633 Pmen_1634     TRUE 0.981 -7.000 0.211 0.097 N NA
 3614841 3614842 Pmen_1634 Pmen_1635     TRUE 0.678 126.000 0.382 NA N NA
 3614842 3614843 Pmen_1635 Pmen_1636     TRUE 0.676 35.000 0.089 NA N NA
 3614845 3614846 Pmen_1638 Pmen_1639     TRUE 0.662 134.000 0.357 1.000 N NA
 3614846 3614847 Pmen_1639 Pmen_1640     FALSE 0.133 231.000 0.000 0.042   NA
 3614847 3614848 Pmen_1640 Pmen_1641     FALSE 0.360 74.000 0.077 NA   NA
 3614848 3614849 Pmen_1641 Pmen_1642     FALSE 0.233 161.000 0.062 NA   NA
 3614849 3614850 Pmen_1642 Pmen_1643     FALSE 0.140 65.000 0.000 NA   NA
 3614850 3614851 Pmen_1643 Pmen_1644     TRUE 0.852 -3.000 0.000 1.000   NA
 3614854 3614855 Pmen_1647 Pmen_1648     FALSE 0.054 196.000 0.000 NA   NA
 3614858 3614859 Pmen_1651 Pmen_1652     FALSE 0.052 198.000 0.000 NA   NA
 3614863 3614864 Pmen_1656 Pmen_1657     FALSE 0.092 154.000 0.000 NA   NA
 3614866 3614867 Pmen_1659 Pmen_1660     FALSE 0.394 112.000 0.121 NA   NA
 3614868 3614869 Pmen_1661 Pmen_1662     TRUE 0.803 23.000 0.102 NA N NA
 3614870 3614871 Pmen_1663 Pmen_1664     TRUE 0.957 17.000 0.088 NA Y NA
 3614871 3614872 Pmen_1664 Pmen_1665     FALSE 0.164 88.000 0.008 NA N NA
 3614872 3614873 Pmen_1665 Pmen_R0023     FALSE 0.114 119.000 0.000 NA   NA
 3614873 3614874 Pmen_R0023 Pmen_1666     FALSE 0.014 427.000 0.000 NA   NA
 3614875 3614876 Pmen_1667 Pmen_1668   algL TRUE 0.975 15.000 0.500 NA   NA
 3614876 3614877 Pmen_1668 Pmen_1669 algL   TRUE 0.994 -9.000 0.750 NA   NA
 3614877 3614878 Pmen_1669 Pmen_1670     TRUE 0.960 35.000 0.750 NA   NA
 3614878 3614879 Pmen_1670 Pmen_1671     TRUE 0.986 16.000 0.750 NA   NA
 3614879 3614880 Pmen_1671 Pmen_1672     TRUE 0.992 11.000 0.750 NA   NA
 3614880 3614881 Pmen_1672 Pmen_1673     TRUE 0.990 18.000 1.000 NA   NA
 3614881 3614882 Pmen_1673 Pmen_1674     TRUE 0.834 -3.000 0.000 NA   NA
 3614882 3614883 Pmen_1674 Pmen_1675     TRUE 0.770 8.000 0.000 NA   NA
 3614883 3614884 Pmen_1675 Pmen_1676     TRUE 0.990 18.000 1.000 NA   NA
 3614884 3614885 Pmen_1676 Pmen_1677     TRUE 0.751 61.000 0.100 NA Y NA
 3614885 3614886 Pmen_1677 Pmen_1678     TRUE 0.697 115.000 0.100 1.000 Y NA
 3614886 3614887 Pmen_1678 Pmen_1679     FALSE 0.009 905.000 0.000 NA N NA
 3614887 3614888 Pmen_1679 Pmen_1680     TRUE 0.995 2.000 0.750 NA N NA
 3614888 3614889 Pmen_1680 Pmen_1681     TRUE 0.793 6.000 0.000 1.000 N NA
 3614889 3614890 Pmen_1681 Pmen_1682     FALSE 0.307 255.000 0.000 0.073 Y NA
 3614891 3614892 Pmen_1683 Pmen_1684     FALSE 0.074 197.000 0.007 NA N NA
 3614894 3614895 Pmen_1686 Pmen_1687     TRUE 0.769 -12.000 0.000 NA   NA
 3614896 3614897 Pmen_1688 Pmen_1689     TRUE 0.864 -7.000 0.007 1.000   NA
 3614897 3614898 Pmen_1689 Pmen_1690     FALSE 0.166 88.000 0.005 NA   NA
 3614899 3614900 Pmen_1691 Pmen_1692     TRUE 0.878 12.000 0.056 NA   NA
 3614900 3614901 Pmen_1692 Pmen_1693     FALSE 0.059 324.000 0.049 NA   NA
 3614901 3614902 Pmen_1693 Pmen_1694     TRUE 0.921 3.000 0.038 NA   NA
 3614902 3614903 Pmen_1694 Pmen_1695     TRUE 0.986 -7.000 0.407 1.000 N NA
 3614903 3614904 Pmen_1695 Pmen_1696     FALSE 0.019 357.000 0.000 1.000 N NA
 3614904 3614905 Pmen_1696 Pmen_1697     TRUE 0.917 5.000 0.044 1.000 N NA
 3614905 3614906 Pmen_1697 Pmen_1698     TRUE 0.552 216.000 0.195 1.000 Y NA
 3614906 3614907 Pmen_1698 Pmen_1699     TRUE 0.865 67.000 0.495 0.041 N NA
 3614907 3614908 Pmen_1699 Pmen_1700     FALSE 0.233 122.000 0.027 1.000   NA
 3614908 3614909 Pmen_1700 Pmen_1701     FALSE 0.028 291.000 0.000 1.000   NA
 3614912 3614913 Pmen_1704 Pmen_1705     FALSE 0.128 182.000 0.025 NA   NA
 3614913 3614914 Pmen_1705 Pmen_1706     TRUE 0.747 10.000 0.000 NA   NA
 3614914 3614915 Pmen_1706 Pmen_1707     FALSE 0.243 44.000 0.000 NA   NA
 3614915 3614916 Pmen_1707 Pmen_1708     FALSE 0.142 60.000 0.000 NA N NA
 3614917 3614918 Pmen_1709 Pmen_1710   nfrB TRUE 0.989 -3.000 0.091 1.000 Y NA
 3614918 3614919 Pmen_1710 Pmen_1711 nfrB   TRUE 0.970 -3.000 0.159 1.000   NA
 3614919 3614920 Pmen_1711 Pmen_1712     TRUE 0.992 0.000 0.500 NA   NA
 3614921 3614922 Pmen_1713 Pmen_1714     FALSE 0.124 97.000 0.000 1.000 N NA
 3614922 3614923 Pmen_1714 Pmen_R0024     FALSE 0.106 137.000 0.000 NA   NA
 3614923 3614924 Pmen_R0024 Pmen_R0025     FALSE 0.114 116.000 0.000 NA   NA
 3614926 3614927 Pmen_1716 Pmen_1717     FALSE 0.114 115.000 0.000 NA   NA
 3614927 3614928 Pmen_1717 Pmen_1718     TRUE 0.937 -7.000 0.080 NA   NA
 3614928 3614929 Pmen_1718 Pmen_1719     TRUE 0.805 21.000 0.080 NA   NA
 3614929 3614930 Pmen_1719 Pmen_1720     TRUE 0.993 13.000 1.000 NA   NA
 3614932 3614933 Pmen_1722 Pmen_1723     TRUE 0.569 72.000 0.222 1.000 N NA
 3614933 3614934 Pmen_1723 Pmen_1724     TRUE 0.993 11.000 0.400 1.000 Y NA
 3614934 3614935 Pmen_1724 Pmen_1725     FALSE 0.191 268.000 0.000 1.000 Y NA
 3614937 3614938 Pmen_1727 Pmen_1728     TRUE 0.954 5.000 0.135 NA   NA
 3614938 3614939 Pmen_1728 Pmen_1729     TRUE 0.580 28.000 0.020 NA   NA
 3614939 3614940 Pmen_1729 Pmen_1730     TRUE 0.758 10.000 0.000 1.000 N NA
 3614941 3614942 Pmen_1731 Pmen_1732     TRUE 0.993 -3.000 0.222 1.000 Y NA
 3614942 3614943 Pmen_1732 Pmen_1733   cysM FALSE 0.123 100.000 0.000 1.000 N NA
 3614943 3614944 Pmen_1733 Pmen_1734 cysM rumA TRUE 0.935 0.000 0.039 1.000 N NA
 3614944 3614945 Pmen_1734 Pmen_1735 rumA   FALSE 0.271 128.000 0.047 1.000 N NA
 3614945 3614946 Pmen_1735 Pmen_1736   mazG TRUE 0.843 13.000 0.035 1.000   NA
 3614946 3614947 Pmen_1736 Pmen_1737 mazG   FALSE 0.111 177.000 0.013 NA   NA
 3614948 3614949 Pmen_1738 Pmen_1739     FALSE 0.101 146.000 0.000 NA   NA
 3614950 3614951 Pmen_1740 Pmen_1741     FALSE 0.322 49.000 0.018 NA   NA
 3614952 3614953 Pmen_R0026 Pmen_1742     FALSE 0.107 134.000 0.000 NA   NA
 3614953 3614954 Pmen_1742 Pmen_1743   mobA FALSE 0.181 68.000 0.005 NA   NA
 3614955 3614956 Pmen_1744 Pmen_1745     TRUE 0.994 -3.000 0.073 0.002 Y NA
 3614956 3614957 Pmen_1745 Pmen_1746     FALSE 0.089 150.000 0.000 NA N NA
 3614957 3614958 Pmen_1746 Pmen_1747     TRUE 0.962 85.000 0.909 NA Y NA
 3614958 3614959 Pmen_1747 Pmen_1748     TRUE 0.974 8.000 0.273 NA   NA
 3614959 3614960 Pmen_1748 Pmen_1749     TRUE 0.776 7.000 0.000 NA   NA
 3614960 3614961 Pmen_1749 Pmen_1750     FALSE 0.014 429.000 0.000 NA   NA
 3614961 3614962 Pmen_1750 Pmen_1751     TRUE 0.993 0.000 0.054 0.007 Y NA
 3614962 3614963 Pmen_1751 Pmen_1752     TRUE 0.950 -3.000 0.071 1.000 N NA
 3614963 3614964 Pmen_1752 Pmen_1753   cobD TRUE 0.929 4.000 0.053 1.000 N NA
 3614964 3614965 Pmen_1753 Pmen_1754 cobD   TRUE 0.994 -7.000 0.463 0.007 N NA
 3614965 3614966 Pmen_1754 Pmen_1755     TRUE 0.973 0.000 0.033 0.007 N NA
 3614966 3614967 Pmen_1755 Pmen_1756   cobU TRUE 0.707 69.000 0.079 1.000 Y NA
 3614967 3614968 Pmen_1756 Pmen_1757 cobU cobT TRUE 0.990 -3.000 0.138 1.000 Y NA
 3614968 3614969 Pmen_1757 Pmen_1758 cobT   TRUE 0.957 0.000 0.090 1.000 N NA
 3614969 3614970 Pmen_1758 Pmen_1759   cobS TRUE 0.913 -3.000 0.021 1.000 N NA
 3614970 3614971 Pmen_1759 Pmen_1760 cobS   FALSE 0.192 74.000 0.008 1.000 N NA
 3614971 3614972 Pmen_1760 Pmen_1761     TRUE 0.662 53.000 0.220 1.000 N NA
 3614972 3614973 Pmen_1761 Pmen_1762     FALSE 0.159 185.000 0.042 1.000 N NA
 3614973 3614974 Pmen_1762 Pmen_1763     FALSE 0.127 123.000 0.000 1.000   NA
 3614974 3614975 Pmen_1763 Pmen_1764     TRUE 0.939 43.000 0.714 1.000   NA
 3614975 3614976 Pmen_1764 Pmen_1765     TRUE 0.975 13.000 0.429 1.000 N NA
 3614977 3614978 Pmen_1766 Pmen_1767     FALSE 0.147 65.000 0.000 1.000 N NA
 3614978 3614979 Pmen_1767 Pmen_1768     TRUE 0.437 144.000 0.182 NA   NA
 3614979 3614980 Pmen_1768 Pmen_1769     FALSE 0.053 197.000 0.000 NA   NA
 3614981 3614982 Pmen_1770 Pmen_1771     FALSE 0.074 175.000 0.000 1.000 N NA
 3614984 3614985 Pmen_1773 Pmen_1774     TRUE 0.949 -3.000 0.073 NA   NA
 3614985 3614986 Pmen_1774 Pmen_1775     TRUE 0.929 4.000 0.056 NA   NA
 3614986 3614987 Pmen_1775 Pmen_1776     FALSE 0.183 88.000 0.011 NA   NA
 3614987 3614988 Pmen_1776 Pmen_1777     FALSE 0.275 68.000 0.034 NA   NA
 3614991 3614992 Pmen_1780 Pmen_1781     FALSE 0.193 106.000 0.020 NA N NA
 3614993 3614994 Pmen_1782 Pmen_1783     TRUE 0.454 57.000 0.091 NA   NA
 3614994 3614995 Pmen_1783 Pmen_1784     TRUE 0.873 5.000 0.011 1.000   NA
 3614995 3614996 Pmen_1784 Pmen_1785     TRUE 0.846 14.000 0.053 NA   NA
 3614996 3614997 Pmen_1785 Pmen_1786     FALSE 0.099 147.000 0.000 NA   NA
 3614998 3614999 Pmen_1787 Pmen_1788     TRUE 0.593 177.000 0.431 NA   NA
 3614999 3615000 Pmen_1788 Pmen_1789     FALSE 0.199 160.000 0.041 NA   NA
 3615004 3615005 Pmen_1793 Pmen_1794     FALSE 0.063 194.000 0.000 1.000   NA
 3615005 3615006 Pmen_1794 Pmen_1795     FALSE 0.120 106.000 0.000 1.000 N NA
 3615006 3615007 Pmen_1795 Pmen_1796     FALSE 0.304 40.000 0.000 1.000   NA
 3615007 3615008 Pmen_1796 Pmen_1797     FALSE 0.142 79.000 0.000 1.000   NA
 3615009 3615010 Pmen_1798 Pmen_1799     TRUE 0.730 10.000 0.000 NA N NA
 3615010 3615011 Pmen_1799 Pmen_1800     TRUE 0.498 120.000 0.200 1.000 N NA
 3615011 3615012 Pmen_1800 Pmen_1801     FALSE 0.130 187.000 0.031 NA   NA
 3615013 3615014 Pmen_1802 Pmen_1803     TRUE 0.985 13.000 0.447 0.066 N NA
 3615014 3615015 Pmen_1803 Pmen_1804     TRUE 0.579 34.000 0.032 1.000 N NA
 3615015 3615016 Pmen_1804 Pmen_1805     FALSE 0.019 348.000 0.000 NA   NA
 3615017 3615018 Pmen_1806 Pmen_1807     FALSE 0.112 123.000 0.000 NA   NA
 3615019 3615020 Pmen_1808 Pmen_1809     FALSE 0.420 186.000 0.273 NA   NA
 3615020 3615021 Pmen_1809 Pmen_1810     FALSE 0.135 163.000 0.015 NA   NA
 3615021 3615022 Pmen_1810 Pmen_1811     TRUE 0.484 50.000 0.077 NA   NA
 3615023 3615024 Pmen_1812 Pmen_1813     FALSE 0.178 82.000 0.005 1.000 N NA
 3615024 3615025 Pmen_1813 Pmen_1814     FALSE 0.105 147.000 0.000 1.000 N NA
 3615025 3615026 Pmen_1814 Pmen_1815     FALSE 0.085 306.000 0.080 1.000 N NA
 3615029 3615030 Pmen_1818 Pmen_1819     TRUE 0.888 -3.000 0.009 NA   NA
 3615030 3615031 Pmen_1819 Pmen_1820     FALSE 0.076 217.000 0.009 1.000   NA
 3615032 3615033 Pmen_1821 Pmen_1822     TRUE 0.982 -3.000 0.255 1.000   NA
 3615034 3615035 Pmen_1823 Pmen_1824     FALSE 0.074 266.000 0.038 NA   NA
 3615038 3615039 Pmen_1827 Pmen_1828     FALSE 0.249 58.000 0.014 NA   NA
 3615040 3615041 Pmen_1829 Pmen_1830     TRUE 0.697 66.000 0.333 NA   NA
 3615041 3615042 Pmen_1830 Pmen_1831     TRUE 0.511 141.000 0.227 NA   NA
 3615042 3615043 Pmen_1831 Pmen_1832     TRUE 0.987 4.000 0.409 NA   NA
 3615043 3615044 Pmen_1832 Pmen_1833     TRUE 0.529 39.000 0.043 NA   NA
 3615045 3615046 Pmen_1834 Pmen_1835     TRUE 0.972 -28.000 0.281 NA   NA
 3615048 3615049 Pmen_1837 Pmen_1838     TRUE 0.858 14.000 0.065 NA   NA
 3615049 3615050 Pmen_1838 Pmen_1839     TRUE 0.953 -3.000 0.083 NA   NA
 3615050 3615051 Pmen_1839 Pmen_1840     FALSE 0.355 97.000 0.087 NA   NA
 3615051 3615052 Pmen_1840 Pmen_1841     FALSE 0.130 181.000 0.026 NA   NA
 3615053 3615054 Pmen_1842 Pmen_1843     FALSE 0.039 240.000 0.000 1.000 N NA
 3615054 3615055 Pmen_1843 Pmen_1844     TRUE 0.866 27.000 0.098 0.066   NA
 3615055 3615056 Pmen_1844 Pmen_1845     TRUE 0.983 0.000 0.259 1.000   NA
 3615056 3615057 Pmen_1845 Pmen_1846     FALSE 0.375 122.000 0.104 1.000 N NA
 3615058 3615059 Pmen_1847 Pmen_1848 mtnA   FALSE 0.064 226.000 0.007 1.000 N NA
 3615059 3615060 Pmen_1848 Pmen_1849     FALSE 0.316 119.000 0.067 1.000 N NA
 3615060 3615061 Pmen_1849 Pmen_1850     TRUE 0.989 2.000 0.121 1.000 Y NA
 3615061 3615062 Pmen_1850 Pmen_1851     TRUE 0.705 88.000 0.098 1.000 Y NA
 3615062 3615063 Pmen_1851 Pmen_1852     TRUE 0.983 -3.000 0.029 1.000 Y NA
 3615063 3615064 Pmen_1852 Pmen_1853   cmk TRUE 0.976 -3.000 0.209 1.000 N NA
 3615064 3615065 Pmen_1853 Pmen_1854 cmk rpsA TRUE 0.562 148.000 0.281 1.000 N NA
 3615065 3615066 Pmen_1854 Pmen_1855 rpsA ihfB FALSE 0.153 412.000 0.292 1.000 N NA
 3615066 3615067 Pmen_1855 Pmen_1856 ihfB   FALSE 0.046 220.000 0.000 1.000 N NA
 3615067 3615068 Pmen_1856 Pmen_1857     TRUE 0.513 22.000 0.000 1.000 N NA
 3615068 3615069 Pmen_1857 Pmen_1858     TRUE 0.557 62.000 0.060 0.059   NA
 3615069 3615070 Pmen_1858 Pmen_1859     TRUE 0.813 5.000 0.000 1.000   NA
 3615070 3615071 Pmen_1859 Pmen_1860     TRUE 0.979 -3.000 0.006 1.000 Y NA
 3615071 3615072 Pmen_1860 Pmen_1861     FALSE 0.389 32.000 0.000 1.000 N NA
 3615072 3615073 Pmen_1861 Pmen_1862     TRUE 0.794 36.000 0.000 1.000 Y NA
 3615073 3615074 Pmen_1862 Pmen_1863     TRUE 0.845 2.000 0.000 1.000   NA
 3615076 3615077 Pmen_1865 Pmen_1866     FALSE 0.327 36.000 0.000 NA   NA
 3615079 3615080 Pmen_1868 Pmen_1869     TRUE 0.971 3.000 0.000 NA Y NA
 3615080 3615081 Pmen_1869 Pmen_1870     TRUE 0.991 2.000 0.157 1.000 Y NA
 3615081 3615082 Pmen_1870 Pmen_1871     FALSE 0.341 35.000 0.000 NA   NA
 3615082 3615083 Pmen_1871 Pmen_1872     TRUE 0.838 0.000 0.000 NA   NA
 3615083 3615084 Pmen_1872 Pmen_1873     TRUE 0.958 -7.000 0.148 1.000   NA
 3615084 3615085 Pmen_1873 Pmen_1874     TRUE 0.978 3.000 0.014 1.000 Y NA
 3615085 3615086 Pmen_1874 Pmen_1875     TRUE 0.994 -3.000 0.250 1.000 Y NA
 3615086 3615087 Pmen_1875 Pmen_1876     TRUE 0.916 -3.000 0.020 1.000   NA
 3615087 3615088 Pmen_1876 Pmen_1877     FALSE 0.097 158.000 0.000 1.000   NA
 3615088 3615089 Pmen_1877 Pmen_1878     FALSE 0.120 110.000 0.000 1.000 N NA
 3615089 3615090 Pmen_1878 Pmen_1879     FALSE 0.189 90.000 0.012 1.000 N NA
 3615091 3615092 Pmen_R0027 Pmen_1880     FALSE 0.110 127.000 0.000 NA   NA
 3615092 3615093 Pmen_1880 Pmen_1881     TRUE 0.796 37.000 0.219 NA   NA
 3615094 3615095 Pmen_1882 Pmen_1883     FALSE 0.317 86.000 0.055 1.000   NA
 3615095 3615096 Pmen_1883 Pmen_1884     TRUE 0.922 -3.000 0.026 1.000   NA
 3615096 3615097 Pmen_1884 Pmen_1885     FALSE 0.131 68.000 0.000 NA   NA
 3615097 3615098 Pmen_1885 Pmen_1886     TRUE 0.747 -39.000 0.000 NA   NA
 3615099 3615100 Pmen_1887 Pmen_1888     TRUE 0.993 5.000 0.275 1.000 Y NA
 3615100 3615101 Pmen_1888 Pmen_1889     FALSE 0.116 243.000 0.000 0.045 N NA
 3615102 3615103 Pmen_1890 Pmen_1891     TRUE 0.923 -16.000 0.074 1.000 N NA
 3615103 3615104 Pmen_1891 Pmen_1892     TRUE 0.991 0.000 0.047 0.066 Y NA
 3615104 3615105 Pmen_1892 Pmen_1893     FALSE 0.029 267.000 0.000 NA   NA
 3615105 3615106 Pmen_1893 Pmen_1894     FALSE 0.115 102.000 0.000 NA   NA
 3615107 3615108 Pmen_1895 Pmen_1896     TRUE 0.437 26.000 0.000 NA   NA
 3615108 3615109 Pmen_1896 Pmen_1897     TRUE 0.707 26.000 0.000 0.066 N NA
 3615109 3615110 Pmen_1897 Pmen_1898     FALSE 0.036 243.000 0.000 NA   NA
 3615110 3615111 Pmen_1898 Pmen_1899     FALSE 0.118 94.000 0.000 NA   NA
 3615111 3615112 Pmen_1899 Pmen_1900     FALSE 0.013 437.000 0.000 NA   NA
 3615112 3615113 Pmen_1900 Pmen_1901     FALSE 0.120 86.000 0.000 NA   NA
 3615113 3615114 Pmen_1901 Pmen_1902     FALSE 0.057 192.000 0.000 NA   NA
 3615114 3615115 Pmen_1902 Pmen_1903   acnA FALSE 0.100 177.000 0.004 1.000 N NA
 3615116 3615117 Pmen_1904 Pmen_1905     FALSE 0.120 217.000 0.047 NA   NA
 3615118 3615119 Pmen_1906 Pmen_1907     TRUE 0.527 42.000 0.054 NA   NA
 3615120 3615121 Pmen_1908 Pmen_1909     FALSE 0.081 166.000 0.000 1.000 N NA
 3615121 3615122 Pmen_1909 Pmen_1910     TRUE 0.934 -3.000 0.041 1.000 N NA
 3615124 3615125 Pmen_1912 Pmen_1913     TRUE 0.905 -3.000 0.019 NA   NA
 3615126 3615127 Pmen_1914 Pmen_1915     TRUE 0.709 53.000 0.267 NA   NA
 3615128 3615129 Pmen_R0028 Pmen_R0029     TRUE 0.598 16.000 0.000 NA   NA
 3615129 3615130 Pmen_R0029 Pmen_R0030     FALSE 0.225 46.000 0.000 NA   NA
 3615130 3615131 Pmen_R0030 Pmen_R0031     TRUE 0.616 15.000 0.000 NA   NA
 3615132 3615133 Pmen_1916 Pmen_1917   fadE FALSE 0.356 101.000 0.090 NA   NA
 3615134 3615135 Pmen_1918 Pmen_1919     FALSE 0.090 155.000 0.000 NA   NA
 3615135 3615136 Pmen_1919 Pmen_1920     TRUE 0.999 -3.000 0.688 0.094 Y NA
 3615136 3615137 Pmen_1920 Pmen_1921     FALSE 0.125 92.000 0.000 1.000 N NA
 3615137 3615138 Pmen_1921 Pmen_1922     TRUE 0.997 -3.000 0.900 NA N NA
 3615138 3615139 Pmen_1922 Pmen_1923   queF FALSE 0.071 173.000 0.000 NA   NA
 3615140 3615141 Pmen_1924 Pmen_1925     FALSE 0.114 119.000 0.000 NA   NA
 3615141 3615142 Pmen_1925 Pmen_1926     FALSE 0.145 63.000 0.000 NA   NA
 3615145 3615146 Pmen_1929 Pmen_1930     TRUE 0.996 -3.000 0.408 NA Y NA
 3615149 3615150 Pmen_1933 Pmen_1934   dnaE2 FALSE 0.120 106.000 0.000 1.000 N NA
 3615150 3615151 Pmen_1934 Pmen_1935 dnaE2   TRUE 0.997 -3.000 0.500 1.000 Y NA
 3615151 3615152 Pmen_1935 Pmen_1936     TRUE 0.995 2.000 0.667 NA   NA
 3615153 3615154 Pmen_1937 Pmen_1938     FALSE 0.029 289.000 0.000 1.000   NA
 3615154 3615155 Pmen_1938 Pmen_1939     FALSE 0.117 342.000 0.182 NA   NA
 3615155 3615156 Pmen_1939 Pmen_1940     TRUE 0.790 -7.000 0.000 NA   NA
 3615156 3615157 Pmen_1940 Pmen_1941     TRUE 0.744 -1902.000 0.000 NA   NA
 3615158 3615159 Pmen_1942 Pmen_1943     FALSE 0.270 44.000 0.000 1.000   NA
 3615159 3615160 Pmen_1943 Pmen_1944     TRUE 0.830 24.000 0.146 NA   NA
 3615160 3615161 Pmen_1944 Pmen_1945     FALSE 0.308 129.000 0.070 NA   NA
 3615161 3615162 Pmen_1945 Pmen_1946     TRUE 0.999 -3.000 0.635 0.094 Y NA
 3615162 3615163 Pmen_1946 Pmen_1947     TRUE 0.975 -3.000 0.189 1.000   NA
 3615163 3615164 Pmen_1947 Pmen_1948     TRUE 0.827 82.000 0.615 NA   NA
 3615165 3615166 Pmen_1949 Pmen_1950     TRUE 0.992 1.000 0.500 NA   NA
 3615166 3615167 Pmen_1950 Pmen_1951     TRUE 0.999 -3.000 0.545 0.027 Y NA
 3615167 3615168 Pmen_1951 Pmen_1952     FALSE 0.070 175.000 0.000 NA   NA
 3615168 3615169 Pmen_1952 Pmen_1953     FALSE 0.324 143.000 0.089 NA   NA
 3615170 3615171 Pmen_1954 Pmen_1955     TRUE 0.986 -3.000 0.317 NA   NA
 3615171 3615172 Pmen_1955 Pmen_1956     FALSE 0.035 244.000 0.000 NA   NA
 3615172 3615173 Pmen_1956 Pmen_1957     TRUE 0.434 102.000 0.154 NA   NA
 3615174 3615175 Pmen_1958 Pmen_1959     TRUE 0.848 149.000 0.786 1.000   NA
 3615175 3615176 Pmen_1959 Pmen_1960     TRUE 0.868 22.000 0.175 NA   NA
 3615176 3615177 Pmen_1960 Pmen_1961     TRUE 0.921 57.000 0.857 NA   NA
 3615179 3615180 Pmen_1963 Pmen_1964     FALSE 0.058 333.000 0.048 1.000 N NA
 3615180 3615181 Pmen_1964 Pmen_1965   pqqA FALSE 0.014 483.000 0.000 1.000   NA
 3615181 3615182 Pmen_1965 Pmen_1966 pqqA   TRUE 0.661 48.000 0.028 0.002   NA
 3615182 3615183 Pmen_1966 Pmen_1967     TRUE 0.990 24.000 0.825 0.002   NA
 3615183 3615184 Pmen_1967 Pmen_1968     TRUE 0.991 -3.000 0.246 0.002   NA
 3615184 3615185 Pmen_1968 Pmen_1969     TRUE 0.983 -28.000 0.211 0.002   NA
 3615185 3615186 Pmen_1969 Pmen_1970     TRUE 0.937 -12.000 0.088 1.000   NA
 3615186 3615187 Pmen_1970 Pmen_1971     FALSE 0.289 78.000 0.041 1.000 N NA
 3615187 3615188 Pmen_1971 Pmen_1972     TRUE 0.910 -16.000 0.054 1.000 N NA
 3615188 3615189 Pmen_1972 Pmen_1973     FALSE 0.124 81.000 0.000 NA   NA
 3615189 3615190 Pmen_1973 Pmen_1974     TRUE 0.760 -15.000 0.000 NA   NA
 3615192 3615193 Pmen_R0032 Pmen_1976   thrS FALSE 0.030 265.000 0.000 NA   NA
 3615193 3615194 Pmen_1976 Pmen_1977 thrS infC TRUE 0.970 18.000 0.186 1.000 Y NA
 3615194 3615195 Pmen_1977 Pmen_1978 infC rpmI TRUE 0.951 61.000 0.652 1.000 Y NA
 3615195 3615196 Pmen_1978 Pmen_1979 rpmI rplT TRUE 0.996 30.000 0.928 0.011 Y NA
 3615196 3615197 Pmen_1979 Pmen_1980 rplT pheS TRUE 0.782 97.000 0.202 1.000 Y NA
 3615197 3615198 Pmen_1980 Pmen_1981 pheS pheT TRUE 0.983 45.000 0.574 0.001 Y NA
 3615198 3615199 Pmen_1981 Pmen_1982 pheT ihfA TRUE 0.971 4.000 0.208 1.000 N NA
 3615199 3615200 Pmen_1982 Pmen_1983 ihfA   TRUE 0.988 -19.000 0.535 1.000 N NA
 3615200 3615201 Pmen_1983 Pmen_R0033     FALSE 0.127 76.000 0.000 NA   NA
 3615201 3615202 Pmen_R0033 Pmen_1984     FALSE 0.025 288.000 0.000 NA   NA
 3615202 3615203 Pmen_1984 Pmen_1985     TRUE 0.512 99.000 0.000 1.000 Y NA
 3615203 3615204 Pmen_1985 Pmen_1986     TRUE 0.999 -3.000 0.542 0.001 Y NA
 3615204 3615205 Pmen_1986 Pmen_1987     TRUE 0.999 -3.000 0.688 0.001 Y NA
 3615205 3615206 Pmen_1987 Pmen_R0034     FALSE 0.011 567.000 0.000 NA   NA
 3615206 3615207 Pmen_R0034 Pmen_R0035     FALSE 0.127 74.000 0.000 NA   NA
 3615207 3615208 Pmen_R0035 Pmen_R0036     TRUE 0.481 23.000 0.000 NA   NA
 3615208 3615209 Pmen_R0036 Pmen_R0037     FALSE 0.033 254.000 0.000 NA   NA
 3615209 3615210 Pmen_R0037 Pmen_R0038     FALSE 0.098 148.000 0.000 NA   NA
 3615211 3615212 Pmen_1988 Pmen_1989     TRUE 0.531 20.000 0.000 NA   NA
 3615212 3615213 Pmen_1989 Pmen_1990     FALSE 0.118 97.000 0.000 NA   NA
 3615213 3615214 Pmen_1990 Pmen_1991     FALSE 0.173 55.000 0.000 NA   NA
 3615214 3615215 Pmen_1991 Pmen_1992     FALSE 0.381 51.000 0.037 NA   NA
 3615216 3615217 Pmen_1993 Pmen_1994     TRUE 0.997 0.000 0.619 0.002   NA
 3615217 3615218 Pmen_1994 Pmen_1995     TRUE 0.996 0.000 0.762 1.000   NA
 3615218 3615219 Pmen_1995 Pmen_1996     TRUE 0.999 -3.000 0.882 1.000 Y NA
 3615220 3615221 Pmen_1997 Pmen_1998     FALSE 0.101 146.000 0.000 NA   NA
 3615222 3615223 Pmen_1999 Pmen_2000     FALSE 0.257 119.000 0.034 1.000   NA
 3615226 3615227 Pmen_2003 Pmen_2004     FALSE 0.012 509.000 0.000 NA   NA
 3615227 3615228 Pmen_2004 Pmen_2005     TRUE 0.692 12.000 0.000 NA   NA
 3615230 3615231 Pmen_2007 Pmen_2008     TRUE 0.991 0.000 0.150 1.000 Y NA
 3615231 3615232 Pmen_2008 Pmen_2009     TRUE 0.993 -3.000 0.100 0.078 Y NA
 3615232 3615233 Pmen_2009 Pmen_2010     TRUE 0.910 72.000 0.469 1.000 Y NA
 3615233 3615234 Pmen_2010 Pmen_2011     FALSE 0.311 122.000 0.000 0.040 N NA
 3615234 3615235 Pmen_2011 Pmen_2012     TRUE 0.842 -3.000 0.000 1.000 N NA
 3615235 3615236 Pmen_2012 Pmen_2013     TRUE 0.663 20.000 0.013 NA   NA
 3615237 3615238 Pmen_2014 Pmen_2015     FALSE 0.114 131.000 0.000 1.000 N NA
 3615242 3615243 Pmen_2019 Pmen_2020     TRUE 0.996 -3.000 0.783 NA   NA
 3615246 3615247 Pmen_2023 Pmen_2024     TRUE 0.498 22.000 0.000 NA   NA
 3615247 3615248 Pmen_2024 Pmen_2025     FALSE 0.141 80.000 0.000 1.000   NA
 3615250 3615251 Pmen_2027 Pmen_2028     TRUE 0.890 -7.000 0.024 1.000 N NA
 3615251 3615252 Pmen_2028 Pmen_2029     FALSE 0.373 138.000 0.028 0.065 N NA
 3615252 3615253 Pmen_2029 Pmen_2030     TRUE 0.522 182.000 0.229 0.065 N NA
 3615253 3615254 Pmen_2030 Pmen_2031     TRUE 0.995 -3.000 0.205 0.065 Y NA
 3615254 3615255 Pmen_2031 Pmen_2032     TRUE 0.786 76.000 0.189 1.000 Y NA
 3615255 3615256 Pmen_2032 Pmen_2033     TRUE 0.850 101.000 0.316 1.000 Y NA
 3615256 3615257 Pmen_2033 Pmen_2034     TRUE 0.509 65.000 0.166 1.000 N NA
 3615258 3615259 Pmen_2035 Pmen_2036     TRUE 0.516 91.000 0.000 1.000 Y NA
 3615259 3615260 Pmen_2036 Pmen_2037     TRUE 0.520 85.000 0.000 1.000 Y NA
 3615261 3615262 Pmen_2038 Pmen_2039 ampC   TRUE 0.676 13.000 0.000 1.000 N NA
 3615265 3615266 Pmen_2042 Pmen_2043     TRUE 0.999 0.000 0.865 0.003 Y NA
 3615266 3615267 Pmen_2043 Pmen_2044     TRUE 0.999 -3.000 0.847 0.059 Y NA
 3615267 3615268 Pmen_2044 Pmen_2045     TRUE 0.999 9.000 0.922 0.059 Y NA
 3615268 3615269 Pmen_2045 Pmen_2046     TRUE 0.991 13.000 0.854 NA   NA
 3615269 3615270 Pmen_2046 Pmen_2047     FALSE 0.425 52.000 0.056 NA   NA
 3615272 3615273 Pmen_R0039 Pmen_R0040     FALSE 0.285 39.000 0.000 NA   NA
 3615273 3615274 Pmen_R0040 Pmen_R0041     FALSE 0.168 56.000 0.000 NA   NA
 3615274 3615275 Pmen_R0041 Pmen_2049   tig FALSE 0.110 127.000 0.000 NA   NA
 3615275 3615276 Pmen_2049 Pmen_2050 tig clpP TRUE 0.869 95.000 0.351 1.000 Y NA
 3615276 3615277 Pmen_2050 Pmen_2051 clpP clpX TRUE 0.865 108.000 0.352 1.000 Y NA
 3615277 3615278 Pmen_2051 Pmen_2052 clpX   TRUE 0.814 150.000 0.201 0.093 Y NA
 3615278 3615279 Pmen_2052 Pmen_2053     FALSE 0.250 136.000 0.040 1.000 N NA
 3615279 3615280 Pmen_2053 Pmen_2054     FALSE 0.104 196.000 0.017 1.000   NA
 3615281 3615282 Pmen_2055 Pmen_2056     FALSE 0.388 219.000 0.000 0.065 Y NA
 3615282 3615283 Pmen_2056 Pmen_2057     TRUE 0.700 29.000 0.057 1.000   NA
 3615283 3615284 Pmen_2057 Pmen_2058     TRUE 0.997 2.000 1.000 1.000   NA
 3615284 3615285 Pmen_2058 Pmen_2059     TRUE 0.998 3.000 1.000 0.059   NA
 3615285 3615286 Pmen_2059 Pmen_2060     TRUE 0.998 2.000 1.000 0.059   NA
 3615286 3615287 Pmen_2060 Pmen_2061     TRUE 0.995 -3.000 0.159 0.059 Y NA
 3615289 3615290 Pmen_2063 Pmen_2064     FALSE 0.253 251.000 0.233 1.000   NA
 3615291 3615292 Pmen_2065 Pmen_2066   rnhA FALSE 0.294 41.000 0.000 1.000   NA
 3615292 3615293 Pmen_2066 Pmen_2067 rnhA   TRUE 0.827 74.000 0.248 1.000 Y NA
 3615293 3615294 Pmen_2067 Pmen_2068     FALSE 0.201 123.000 0.019 1.000 N NA
 3615294 3615295 Pmen_2068 Pmen_2069     FALSE 0.120 203.000 0.035 1.000 N NA
 3615295 3615296 Pmen_2069 Pmen_2070     TRUE 0.736 47.000 0.250 NA   NA
 3615296 3615297 Pmen_2070 Pmen_2071   nudC TRUE 0.937 0.000 0.045 NA   NA
 3615300 3615301 Pmen_2074 Pmen_2075     TRUE 0.876 17.000 0.115 1.000   NA
 3615301 3615302 Pmen_2075 Pmen_2076     FALSE 0.082 268.000 0.000 0.093   NA
 3615302 3615303 Pmen_2076 Pmen_2077     TRUE 0.996 5.000 0.923 NA   NA
 3615303 3615304 Pmen_2077 Pmen_2078     TRUE 0.952 6.000 0.141 NA   NA
 3615305 3615306 Pmen_2079 Pmen_2080   prpB TRUE 0.953 -3.000 0.080 1.000 N NA
 3615306 3615307 Pmen_2080 Pmen_2081 prpB   TRUE 0.922 37.000 0.502 1.000 N NA
 3615307 3615308 Pmen_2081 Pmen_2082     TRUE 0.995 2.000 0.289 1.000 Y NA
 3615308 3615309 Pmen_2082 Pmen_2083     TRUE 0.767 177.000 0.733 NA   NA
 3615311 3615312 Pmen_2085 Pmen_2086     FALSE 0.126 188.000 0.029 NA   NA
 3615312 3615313 Pmen_2086 Pmen_2087     FALSE 0.142 252.000 0.113 NA   NA
 3615313 3615314 Pmen_2087 Pmen_2088     TRUE 0.938 6.000 0.093 NA N NA
 3615314 3615315 Pmen_2088 Pmen_2089     TRUE 0.466 56.000 0.093 NA   NA
 3615315 3615316 Pmen_2089 Pmen_2090     TRUE 0.980 2.000 0.256 NA   NA
 3615316 3615317 Pmen_2090 Pmen_2091     TRUE 0.614 83.000 0.279 NA   NA
 3615317 3615318 Pmen_2091 Pmen_2092     FALSE 0.120 109.000 0.000 1.000 N NA
 3615319 3615320 Pmen_2093 Pmen_2094     FALSE 0.324 66.000 0.048 1.000 N NA
 3615320 3615321 Pmen_2094 Pmen_2095     TRUE 0.738 110.000 0.294 0.055 N NA
 3615321 3615322 Pmen_2095 Pmen_2096     TRUE 0.997 -3.000 0.539 0.001 N NA
 3615322 3615323 Pmen_2096 Pmen_2097     FALSE 0.065 280.000 0.033 1.000 N NA
 3615323 3615324 Pmen_2097 Pmen_2098     TRUE 0.664 111.000 0.337 1.000 N NA
 3615324 3615325 Pmen_2098 Pmen_2099     FALSE 0.014 423.000 0.000 NA   NA
 3615325 3615326 Pmen_2099 Pmen_2100     FALSE 0.104 141.000 0.000 NA   NA
 3615326 3615327 Pmen_2100 Pmen_2101     FALSE 0.126 79.000 0.000 NA   NA
 3615327 3615328 Pmen_2101 Pmen_2102     FALSE 0.127 74.000 0.000 NA   NA
 3615328 3615329 Pmen_2102 Pmen_2103     FALSE 0.114 111.000 0.000 NA   NA
 3615329 3615330 Pmen_2103 Pmen_2104     TRUE 0.937 118.000 0.396 0.001 Y NA
 3615330 3615331 Pmen_2104 Pmen_2105     TRUE 0.993 13.000 0.514 NA Y NA
 3615331 3615332 Pmen_2105 Pmen_2106     FALSE 0.016 388.000 0.000 NA   NA
 3615335 3615336 Pmen_2109 Pmen_R0042     FALSE 0.118 94.000 0.000 NA   NA
 3615337 3615338 Pmen_2110 Pmen_2111     TRUE 0.994 0.000 0.600 NA   NA
 3615338 3615339 Pmen_21