MicrobesOnline Operon Predictions for Janthinobacterium sp. Marseille

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 3548874 3548875 mma_0001 mma_0002 dnaA dnaN FALSE 0.329 349.000 0.328 1.000 Y NA
 3548875 3548876 mma_0002 mma_0003 dnaN gyrB FALSE 0.153 408.000 0.114 1.000 Y NA
 3548876 3548877 mma_0003 mma_0004 gyrB   FALSE 0.027 258.000 0.000 NA   NA
 3548877 3548878 mma_0004 mma_0005     FALSE 0.216 243.000 0.293 NA   NA
 3548878 3548879 mma_0005 mma_0006     TRUE 0.948 -3.000 0.024 NA   NA
 3548880 3548881 mma_0007 mma_0008     TRUE 0.608 24.000 0.000 NA   NA
 3548882 3548883 mma_0009 mma_0010 fhaC1   TRUE 0.796 22.000 0.056 NA   NA
 3548883 3548884 mma_0010 mma_0011     TRUE 0.998 -31.000 1.000 NA   NA
 3548885 3548886 mma_0012 mma_0013   cheB1 TRUE 0.993 18.000 0.480 0.026 Y NA
 3548886 3548887 mma_0013 mma_0014 cheB1 cheA1 TRUE 0.997 3.000 0.324 0.016 Y NA
 3548887 3548888 mma_0014 mma_0015 cheA1 cheW1 TRUE 0.999 -3.000 0.587 0.016 Y NA
 3548888 3548889 mma_0015 mma_0016 cheW1 cheR2 TRUE 0.988 26.000 0.558 1.000 Y NA
 3548889 3548890 mma_0016 mma_0017 cheR2 cheW2 TRUE 0.999 -3.000 0.635 1.000 Y NA
 3548890 3548891 mma_0017 mma_0018 cheW2 tar1 TRUE 0.996 12.000 0.600 0.014 Y NA
 3548891 3548892 mma_0018 mma_0019 tar1   FALSE 0.019 309.000 0.000 NA   NA
 3548893 3548894 mma_0020 mma_0021 acrB1 acrA1 TRUE 0.833 2.000 0.000 NA N NA
 3548894 3548895 mma_0021 mma_0022 acrA1 tolC1 TRUE 0.986 -3.000 0.000 1.000 Y NA
 3548895 3548896 mma_0022 mma_0023 tolC1   FALSE 0.273 70.000 0.000 1.000 N NA
 3548896 3548897 mma_0023 mma_0024     TRUE 0.999 -3.000 0.793 0.003 Y NA
 3548898 3548899 mma_0025 mma_0026   tar2 FALSE 0.059 173.000 0.000 NA N NA
 3548901 3548902 mma_0028 mma_0029 ompW2   FALSE 0.140 131.000 0.000 1.000 N NA
 3548904 3548905 mma_0031 mma_0032   amaB1 TRUE 0.917 35.000 0.000 0.005 Y NA
 3548905 3548906 mma_0032 mma_0033 amaB1   TRUE 0.896 26.000 0.000 1.000 Y NA
 3548906 3548907 mma_0033 mma_0034     TRUE 0.998 -19.000 0.532 1.000 Y NA
 3548907 3548908 mma_0034 mma_0035     TRUE 0.998 -3.000 0.308 0.012 Y NA
 3548908 3548909 mma_0035 mma_0036     TRUE 0.816 85.000 0.000 0.083 Y NA
 3548909 3548910 mma_0036 mma_0037     TRUE 0.894 -3.000 0.000 1.000 N NA
 3548910 3548911 mma_0037 mma_0038   ahpF FALSE 0.019 260.000 0.000 1.000 N NA
 3548911 3548912 mma_0038 mma_0039 ahpF ahpC TRUE 0.963 96.000 0.551 1.000 Y NA
 3548913 3548914 mma_0040 mma_0041     TRUE 0.908 47.000 0.452 1.000   NA
 3548914 3548915 mma_0041 mma_0042     FALSE 0.416 49.000 0.005 1.000   NA
 3548915 3548916 mma_0042 mma_0043   greB1 FALSE 0.322 99.000 0.005 1.000   NA
 3548916 3548917 mma_0043 mma_0044 greB1   TRUE 0.473 64.000 0.027 NA   NA
 3548917 3548918 mma_0044 mma_0045     FALSE 0.016 339.000 0.000 NA   NA
 3548919 3548920 mma_0046 mma_0047   pnuC TRUE 0.992 2.000 0.143 1.000 Y NA
 3548921 3548922 mma_0048 mma_0049     FALSE 0.011 457.000 0.000 NA   NA
 3548922 3548923 mma_0049 mma_0050   tolC2 TRUE 0.994 -3.000 0.500 1.000 N NA
 3548923 3548924 mma_0050 mma_0051 tolC2 acrA2 TRUE 0.972 33.000 0.333 1.000 Y NA
 3548924 3548925 mma_0051 mma_0052 acrA2 acrB2 TRUE 0.988 9.000 0.792 1.000 N NA
 3548925 3548926 mma_0052 mma_0053 acrB2   TRUE 0.965 0.000 0.091 NA   NA
 3548926 3548927 mma_0053 mma_0054     TRUE 0.942 2.000 0.053 NA   NA
 3548930 3548931 mma_0057 mma_0058 yjdB colS1 TRUE 0.570 119.000 0.133 1.000   NA
 3548931 3548932 mma_0058 mma_0059 colS1 colR1 TRUE 0.999 -10.000 1.000 1.000 Y NA
 3548932 3548933 mma_0059 mma_0060 colR1   FALSE 0.387 89.000 0.014 NA   NA
 3548933 3548934 mma_0060 mma_0061     TRUE 0.763 14.000 0.014 NA   NA
 3548934 3548935 mma_0061 mma_0062     FALSE 0.398 87.000 0.016 NA   NA
 3548935 3548936 mma_0062 mma_0063     FALSE 0.144 157.000 0.016 NA   NA
 3548936 3548937 mma_0063 mma_0064   parA1 FALSE 0.010 516.000 0.000 NA   NA
 3548937 3548938 mma_0064 mma_0065 parA1   FALSE 0.097 164.000 0.000 NA   NA
 3548938 3548939 mma_0065 mma_0066     TRUE 0.950 12.000 0.224 NA   NA
 3548939 3548940 mma_0066 mma_0067     TRUE 0.552 29.000 0.000 NA   NA
 3548940 3548941 mma_0067 mma_0068     FALSE 0.015 351.000 0.000 NA   NA
 3548942 3548943 mma_0069 mma_0070     TRUE 0.480 58.000 0.026 NA   NA
 3548943 3548944 mma_0070 mma_0071     TRUE 0.508 34.000 0.000 NA   NA
 3548944 3548945 mma_0071 mma_0072     FALSE 0.126 149.000 0.000 NA   NA
 3548947 3548948 mma_0074 mma_0075 creA   TRUE 0.651 25.000 0.011 NA   NA
 3548950 3548951 mma_0077 mma_0078 tag sugE FALSE 0.006 620.000 0.000 1.000 N NA
 3548952 3548953 mma_0079 mma_0080   tar3 FALSE 0.025 273.000 0.000 1.000   NA
 3548953 3548954 mma_0080 mma_0081 tar3 cheW3 TRUE 0.962 118.000 0.500 0.014 Y NA
 3548955 3548956 mma_0082 mma_0083   tar4 FALSE 0.061 191.000 0.000 1.000   NA
 3548957 3548958 mma_0084 mma_0085 corA1   FALSE 0.428 104.000 0.035 NA   NA
 3548965 3548966 mma_0092 mma_0093     TRUE 0.930 -10.000 0.006 1.000   NA
 3548966 3548967 mma_0093 mma_0094     FALSE 0.043 191.000 0.000 1.000 N NA
 3548968 3548969 mma_0095 mma_0096 livF1 livG1 TRUE 0.999 0.000 0.800 0.024 Y NA
 3548969 3548970 mma_0096 mma_0097 livG1 livM1 TRUE 0.999 -3.000 0.800 1.000 Y NA
 3548970 3548971 mma_0097 mma_0098 livM1 livH1 TRUE 0.994 -3.000 0.060 0.065 Y NA
 3548971 3548972 mma_0098 mma_0099 livH1 livK1 TRUE 0.865 73.000 0.090 NA Y NA
 3548973 3548974 mma_0100 mma_0101   tctC1 FALSE 0.206 127.000 0.000 NA   NA
 3548974 3548975 mma_0101 mma_0102 tctC1 tctB1 TRUE 0.710 14.000 0.000 NA   NA
 3548975 3548976 mma_0102 mma_0103 tctB1 tctA1 TRUE 0.901 38.000 0.333 NA   NA
 3548976 3548977 mma_0103 mma_0104 tctA1 mdcA1 TRUE 0.922 -3.000 0.000 NA   NA
 3548977 3548978 mma_0104 mma_0105 mdcA1 mdcC1 TRUE 0.985 7.000 0.500 NA   NA
 3548978 3548979 mma_0105 mma_0106 mdcC1 mdcD1 TRUE 0.955 -3.000 0.037 NA   NA
 3548979 3548980 mma_0106 mma_0107 mdcD1 mdcE1 TRUE 0.950 -7.000 0.025 NA   NA
 3548980 3548981 mma_0107 mma_0108 mdcE1 mdcG1 TRUE 0.994 -70.000 0.500 NA   NA
 3548981 3548982 mma_0108 mma_0109 mdcG1 mdcB1 TRUE 0.964 -9.000 0.051 1.000   NA
 3548982 3548983 mma_0109 mma_0110 mdcB1 mdcH1 TRUE 0.707 48.000 0.127 1.000 N NA
 3548983 3548984 mma_0110 mma_0111 mdcH1   TRUE 0.498 27.000 0.000 1.000 N NA
 3548984 3548985 mma_0111 mma_0112     FALSE 0.058 193.000 0.000 NA   NA
 3548985 3548986 mma_0112 mma_0113   argS FALSE 0.344 77.000 0.000 NA   NA
 3548986 3548987 mma_0113 mma_0114 argS   TRUE 0.698 38.000 0.062 NA   NA
 3548987 3548988 mma_0114 mma_0115   dsbA TRUE 0.978 15.000 0.573 NA   NA
 3548988 3548989 mma_0115 mma_0116 dsbA   TRUE 0.867 86.000 0.434 1.000   NA
 3548990 3548991 mma_0117 mma_0118     TRUE 0.494 36.000 0.000 NA   NA
 3548992 3548993 mma_0119 mma_0120   bioA TRUE 0.596 25.000 0.003 NA   NA
 3548993 3548994 mma_0120 mma_0121 bioA bioF TRUE 0.996 -3.000 0.054 0.002 Y NA
 3548994 3548995 mma_0121 mma_0122 bioF bioD TRUE 0.995 2.000 0.121 0.002 Y NA
 3548995 3548996 mma_0122 mma_0123 bioD bioB TRUE 0.921 43.000 0.025 0.002 Y NA
 3548996 3548997 mma_0123 mma_0124 bioB hmgL FALSE 0.255 89.000 0.000 1.000 N NA
 3548998 3548999 mma_0125 mma_0126 fcbTl1 fcbTs1 TRUE 0.996 -3.000 0.600 NA   NA
 3548999 3549000 mma_0126 mma_0127 fcbTs1 fcbTp1 TRUE 0.974 88.000 0.743 NA Y NA
 3549001 3549002 mma_0128 mma_0129     TRUE 0.947 -7.000 0.020 NA   NA
 3549003 3549004 mma_0130 mma_0131     FALSE 0.159 140.000 0.000 NA   NA
 3549005 3549006 mma_0132 mma_0133     FALSE 0.315 97.000 0.000 NA   NA
 3549006 3549007 mma_0133 mma_0134     FALSE 0.339 82.000 0.000 NA   NA
 3549007 3549008 mma_0134 mma_0135   ada TRUE 0.830 119.000 0.500 NA   NA
 3549008 3549009 mma_0135 mma_0136 ada ogt1 TRUE 0.975 14.000 0.030 0.001 Y NA
 3549010 3549011 mma_0137 mma_0138 bcpB   FALSE 0.369 57.000 0.000 NA   NA
 3549011 3549012 mma_0138 mma_0139   topB FALSE 0.079 175.000 0.000 NA   NA
 3549012 3549013 mma_0139 mma_0140 topB smg FALSE 0.063 240.000 0.045 NA   NA
 3549013 3549014 mma_0140 mma_0141 smg smf FALSE 0.132 229.000 0.124 NA   NA
 3549014 3549015 mma_0141 mma_0142 smf   TRUE 0.761 23.000 0.043 1.000   NA
 3549016 3549017 mma_0143 mma_0144 def1 fmt TRUE 0.905 100.000 0.105 0.028 Y NA
 3549017 3549018 mma_0144 mma_0145 fmt   TRUE 0.471 37.000 0.002 NA   NA
 3549020 3549021 mma_0147 mma_0148 rocD   TRUE 0.988 -3.000 0.019 1.000 Y NA
 3549021 3549022 mma_0148 mma_0149   metH FALSE 0.338 175.000 0.004 1.000 Y NA
 3549025 3549026 mma_0152 mma_0153     TRUE 0.545 80.000 0.054 NA   NA
 3549026 3549027 mma_0153 mma_0154     FALSE 0.140 185.000 0.054 NA   NA
 3549027 3549028 mma_0154 mma_0155     TRUE 0.956 -3.000 0.038 NA   NA
 3549028 3549029 mma_0155 mma_0156     TRUE 0.973 58.000 0.605 1.000 Y NA
 3549029 3549030 mma_0156 mma_0157     TRUE 0.997 -3.000 0.810 NA   NA
 3549030 3549031 mma_0157 mma_0158   sun TRUE 0.501 119.000 0.094 NA   NA
 3549031 3549032 mma_0158 mma_0159 sun   FALSE 0.021 296.000 0.000 NA   NA
 3549032 3549033 mma_0159 mma_0160     TRUE 0.697 103.000 0.182 NA   NA
 3549033 3549034 mma_0160 mma_0161   tar5 FALSE 0.287 106.000 0.000 NA   NA
 3549035 3549036 mma_0162 mma_0163     FALSE 0.030 246.000 0.000 NA   NA
 3549037 3549038 mma_0164 mma_0165   tdcF1 TRUE 0.569 19.000 0.000 NA N NA
 3549038 3549039 mma_0165 mma_0166 tdcF1   FALSE 0.393 51.000 0.000 NA   NA
 3549039 3549040 mma_0166 mma_0167     FALSE 0.248 121.000 0.007 NA   NA
 3549041 3549042 mma_0168 mma_0169   glnK1 TRUE 0.890 27.000 0.200 NA   NA
 3549042 3549043 mma_0169 mma_0170 glnK1 amtB1 TRUE 0.851 11.000 0.054 1.000 N NA
 3549043 3549044 mma_0170 mma_0171 amtB1 gshA1 FALSE 0.054 228.000 0.020 1.000   NA
 3549044 3549045 mma_0171 mma_0172 gshA1 gshB FALSE 0.381 146.000 0.120 1.000   NA
 3549045 3549046 mma_0172 mma_0173 gshB   TRUE 0.487 64.000 0.048 1.000 N NA
 3549046 3549047 mma_0173 mma_0174   ptsH TRUE 0.986 25.000 0.261 0.002 Y NA
 3549047 3549048 mma_0174 mma_0175 ptsH ptsI TRUE 0.948 96.000 0.205 0.002 Y NA
 3549049 3549050 mma_0176 mma_0177     TRUE 0.993 21.000 0.438 0.002 Y NA
 3549050 3549051 mma_0177 mma_0178     FALSE 0.011 344.000 0.000 1.000 N NA
 3549051 3549052 mma_0178 mma_0179     TRUE 0.987 0.000 0.039 NA Y NA
 3549052 3549053 mma_0179 mma_0180   lgtF TRUE 0.953 13.000 0.029 NA Y NA
 3549054 3549055 mma_0181 mma_0182 metX   TRUE 0.995 -3.000 0.509 NA   NA
 3549057 3549058 mma_0183 mma_0185     TRUE 0.857 23.000 0.111 NA   NA
 3549058 3549059 mma_0185 mma_0186   sulP2 TRUE 0.743 19.000 0.024 NA   NA
 3549059 3549060 mma_0186 mma_0187 sulP2   FALSE 0.247 117.000 0.000 NA   NA
 3549061 3549062 mma_0188 mma_0189   phoX FALSE 0.013 401.000 0.000 NA   NA
 3549062 3549063 mma_0189 mma_0190 phoX xthA1 FALSE 0.163 138.000 0.003 NA   NA
 3549064 3549065 mma_0191 mma_0192 pyrE   TRUE 0.770 25.000 0.052 NA   NA
 3549066 3549067 mma_0193 mma_0194 gatB gatA1 TRUE 0.978 72.000 0.492 0.002 Y NA
 3549067 3549068 mma_0194 mma_0195 gatA1 gatC TRUE 0.984 73.000 0.643 0.002 Y NA
 3549069 3549070 mma_0196 mma_0197 mreB mreC TRUE 0.729 155.000 0.689 1.000 N NA
 3549070 3549071 mma_0197 mma_0198 mreC mreD TRUE 0.999 -3.000 0.550 0.003 Y NA
 3549071 3549072 mma_0198 mma_0199 mreD mrdA TRUE 0.925 39.000 0.108 1.000 Y NA
 3549072 3549073 mma_0199 mma_0200 mrdA rodA TRUE 0.963 -3.000 0.073 1.000 N NA
 3549073 3549074 mma_0200 mma_0201 rodA rlpA FALSE 0.276 65.000 0.000 NA N NA
 3549076 3549077 mma_0203 mma_0204     TRUE 0.949 9.000 0.172 NA   NA
 3549077 3549078 mma_0204 mma_0205   gmhA TRUE 0.738 55.000 0.187 1.000 N NA
 3549078 3549079 mma_0205 mma_0206 gmhA   TRUE 0.996 -7.000 0.613 NA   NA
 3549079 3549080 mma_0206 mma_0207   betT FALSE 0.332 85.000 0.000 NA   NA
 3549080 3549081 mma_0207 mma_0208 betT lemA1 TRUE 0.679 17.000 0.000 NA   NA
 3549081 3549082 mma_0208 mma_0209 lemA1   TRUE 0.829 66.000 0.307 NA   NA
 3549082 3549083 mma_0209 mma_0210     FALSE 0.416 90.000 0.020 1.000   NA
 3549084 3549085 mma_0211 mma_0212 hemK1 dsbB TRUE 0.871 0.000 0.006 1.000 N NA
 3549085 3549086 mma_0212 mma_0213 dsbB prfA FALSE 0.257 69.000 0.002 1.000 N NA
 3549086 3549087 mma_0213 mma_0214 prfA hemA TRUE 0.740 107.000 0.171 0.044 N NA
 3549087 3549088 mma_0214 mma_0215 hemA   FALSE 0.262 83.000 0.003 1.000 N NA
 3549088 3549089 mma_0215 mma_0216     TRUE 0.867 17.000 0.086 1.000   NA
 3549089 3549090 mma_0216 mma_0217   ompR1 TRUE 0.657 33.000 0.034 1.000   NA
 3549090 3549091 mma_0217 mma_0218 ompR1 psiF FALSE 0.008 704.000 0.000 NA   NA
 3549091 3549092 mma_0218 mma_0219 psiF   FALSE 0.118 153.000 0.000 NA   NA
 3549092 3549093 mma_0219 mma_0220     FALSE 0.323 90.000 0.000 NA   NA
 3549093 3549094 mma_0220 mma_0221   adhC TRUE 0.887 20.000 0.136 1.000   NA
 3549097 3549098 mma_0224 mma_0225     TRUE 0.452 42.000 0.000 NA   NA
 3549098 3549099 mma_0225 mma_0226   pbuX1 FALSE 0.194 129.000 0.000 NA   NA
 3549099 3549100 mma_0226 mma_0227 pbuX1   TRUE 0.483 28.000 0.000 1.000 N NA
 3549100 3549101 mma_0227 mma_0228     FALSE 0.102 161.000 0.000 NA   NA
 3549103 3549104 mma_0229 mma_0230   dsbC TRUE 0.955 42.000 0.814 1.000 N NA
 3549104 3549105 mma_0230 mma_0231 dsbC   FALSE 0.283 182.000 0.174 1.000   NA
 3549106 3549107 mma_0232 mma_0233 trpC trpD1 TRUE 0.968 33.000 0.293 1.000 Y NA
 3549107 3549108 mma_0233 mma_0234 trpD1 trpG TRUE 0.912 44.000 0.105 1.000 Y NA
 3549108 3549109 mma_0234 mma_0235 trpG trpE TRUE 0.997 1.000 0.230 0.001 Y NA
 3549109 3549110 mma_0235 mma_0236 trpE gph1 FALSE 0.334 184.000 0.233 1.000   NA
 3549110 3549111 mma_0236 mma_0237 gph1 rpe TRUE 0.641 27.000 0.012 1.000   NA
 3549112 3549113 mma_0238 mma_0239 apaG   FALSE 0.179 164.000 0.063 NA N NA
 3549113 3549114 mma_0239 mma_0240   paaG1 FALSE 0.337 56.000 0.009 1.000 N NA
 3549114 3549115 mma_0240 mma_rRNA01 paaG1   FALSE 0.009 531.000 0.000 NA   NA
 3549115 3549116 mma_rRNA01 mma_tRNA02     FALSE 0.221 123.000 0.000 NA   NA
 3549116 3549117 mma_tRNA02 mma_tRNA03     TRUE 0.616 23.000 0.000 NA   NA
 3549117 3549118 mma_tRNA03 mma_rRNA02     FALSE 0.019 306.000 0.000 NA   NA
 3549118 3549119 mma_rRNA02 mma_rRNA03     FALSE 0.046 211.000 0.000 NA   NA
 3549119 3549120 mma_rRNA03 mma_tRNA04     FALSE 0.018 314.000 0.000 NA   NA
 3549120 3549121 mma_tRNA04 mma_0241     FALSE 0.012 435.000 0.000 NA   NA
 3549121 3549122 mma_0241 mma_0242   terC3 FALSE 0.007 897.000 0.000 NA   NA
 3549122 3549123 mma_0242 mma_0243 terC3 usp1 TRUE 0.566 53.000 0.067 1.000 N NA
 3549123 3549124 mma_0243 mma_0244 usp1   FALSE 0.007 562.000 0.000 1.000 N NA
 3549124 3549125 mma_0244 mma_0245   exbB1 TRUE 0.511 69.000 0.000 0.014 N NA
 3549125 3549126 mma_0245 mma_0246 exbB1 exbD1 TRUE 0.980 4.000 0.000 0.081 Y NA
 3549126 3549127 mma_0246 mma_0247 exbD1 exbD2 TRUE 0.940 21.000 0.000 0.064 Y NA
 3549127 3549128 mma_0247 mma_0248 exbD2   FALSE 0.405 36.000 0.000 NA N NA
 3549128 3549129 mma_0248 mma_0249     FALSE 0.114 141.000 0.000 NA N NA
 3549129 3549130 mma_0249 mma_0250     FALSE 0.073 388.000 0.000 NA Y NA
 3549130 3549131 mma_0250 mma_0251     FALSE 0.337 46.000 0.000 NA N NA
 3549131 3549132 mma_0251 mma_0252     FALSE 0.276 67.000 0.000 1.000 N NA
 3549132 3549133 mma_0252 mma_0253     FALSE 0.186 118.000 0.000 1.000 N NA
 3549133 3549134 mma_0253 mma_0254     TRUE 0.999 -3.000 0.500 0.006 Y NA
 3549135 3549136 mma_0255 mma_0256   sseA1 TRUE 0.958 1.000 0.086 NA   NA
 3549136 3549137 mma_0256 mma_0257 sseA1   FALSE 0.132 135.000 0.000 1.000 N NA
 3549138 3549139 mma_0258 mma_0259     FALSE 0.267 74.000 0.000 NA N NA
 3549139 3549140 mma_0259 mma_0260     TRUE 0.923 -3.000 0.000 1.000   NA
 3549140 3549141 mma_0260 mma_0261     TRUE 0.924 -10.000 0.000 1.000   NA
 3549141 3549142 mma_0261 mma_0262     TRUE 0.787 112.000 0.000 0.013 Y NA
 3549142 3549143 mma_0262 mma_0263     TRUE 0.787 112.000 0.000 0.013 Y NA
 3549143 3549144 mma_0263 mma_0264     TRUE 0.605 38.000 0.000 0.063 N NA
 3549144 3549145 mma_0264 mma_0265     TRUE 0.999 -3.000 1.000 0.063 Y NA
 3549145 3549146 mma_0265 mma_0266     FALSE 0.274 69.000 0.000 1.000 N NA
 3549146 3549147 mma_0266 mma_0267     TRUE 0.923 -3.000 0.000 1.000   NA
 3549148 3549149 mma_0268 mma_0269 glpK   TRUE 0.531 23.000 0.004 NA N NA
 3549150 3549151 mma_0270 mma_0271 garR1   FALSE 0.434 112.000 0.048 1.000   NA
 3549151 3549152 mma_0271 mma_0272     TRUE 0.525 73.000 0.048 NA   NA
 3549154 3549155 mma_0274 mma_0275   fadD FALSE 0.262 113.000 0.000 1.000   NA
 3549157 3549158 mma_0277 mma_0278 atm1 gdhA1 FALSE 0.210 110.000 0.000 1.000 N NA
 3549158 3549159 mma_0278 mma_0279 gdhA1 gltI TRUE 0.689 110.000 0.000 1.000 Y NA
 3549159 3549160 mma_0279 mma_0280 gltI gltJ TRUE 0.922 62.000 0.111 0.063 Y NA
 3549160 3549161 mma_0280 mma_0281 gltJ gltK TRUE 0.999 -7.000 0.897 0.012 Y NA
 3549161 3549162 mma_0281 mma_0282 gltK gltL TRUE 0.970 11.000 0.069 1.000 Y NA
 3549162 3549163 mma_0282 mma_0283 gltL pyrC1 FALSE 0.246 101.000 0.004 1.000 N NA
 3549163 3549164 mma_0283 mma_0284 pyrC1   TRUE 0.793 20.000 0.048 NA   NA
 3549165 3549166 mma_0285 mma_0286 tolC3 czcA1 TRUE 0.720 9.000 0.000 1.000 N NA
 3549166 3549167 mma_0286 mma_0287 czcA1 czcB1 TRUE 0.997 -7.000 1.000 1.000 N NA
 3549167 3549168 mma_0287 mma_0288 czcB1 ragB FALSE 0.046 187.000 0.000 1.000 N NA
 3549168 3549169 mma_0288 mma_0289 ragB ragA TRUE 0.893 42.000 0.058 1.000 Y NA
 3549169 3549170 mma_0289 mma_0290 ragA   FALSE 0.044 190.000 0.000 1.000 N NA
 3549170 3549171 mma_0290 mma_0291     FALSE 0.127 344.000 0.000 0.063 Y NA
 3549174 3549175 mma_0294 mma_0295 rplM rpsI TRUE 0.997 10.000 0.601 0.017 Y NA
 3549175 3549176 mma_0295 mma_0296 rpsI argC FALSE 0.164 149.000 0.032 1.000 N NA
 3549176 3549177 mma_0296 mma_0297 argC   TRUE 0.689 18.000 0.007 NA   NA
 3549177 3549178 mma_0297 mma_0298     TRUE 0.957 13.000 0.293 NA   NA
 3549178 3549179 mma_0298 mma_0299     TRUE 0.648 51.000 0.079 NA   NA
 3549180 3549181 mma_0300 mma_0301     TRUE 0.680 95.000 0.184 NA N NA
 3549182 3549183 mma_0302 mma_0303 tyrS dtd TRUE 0.974 11.000 0.026 0.043 Y NA
 3549183 3549184 mma_0303 mma_0304 dtd   FALSE 0.374 73.000 0.008 NA   NA
 3549184 3549185 mma_0304 mma_0305   gpm1 TRUE 0.848 26.000 0.117 NA   NA
 3549185 3549186 mma_0305 mma_0306 gpm1   FALSE 0.144 128.000 0.002 1.000 N NA
 3549186 3549187 mma_0306 mma_0307   fis TRUE 0.978 -67.000 0.161 1.000 N NA
 3549187 3549188 mma_0307 mma_0308 fis purH FALSE 0.392 133.000 0.101 1.000 N NA
 3549188 3549189 mma_0308 mma_0309 purH ruvC FALSE 0.404 57.000 0.023 1.000 N NA
 3549189 3549190 mma_0309 mma_0310 ruvC ruvA TRUE 0.906 42.000 0.011 0.010 Y NA
 3549190 3549191 mma_0310 mma_0311 ruvA ruvB TRUE 0.928 36.000 0.011 0.002 Y NA
 3549191 3549192 mma_0311 mma_0312 ruvB   FALSE 0.391 49.000 0.002 NA   NA
 3549192 3549193 mma_0312 mma_0313   mhpD FALSE 0.062 191.000 0.005 NA   NA
 3549194 3549195 mma_0314 mma_0315 tar6 valS FALSE 0.015 289.000 0.000 1.000 N NA
 3549196 3549197 mma_0316 mma_0317 thiS1 thiG1 TRUE 0.940 35.000 0.130 1.000 Y NA
 3549197 3549198 mma_0317 mma_0318 thiG1 thiE TRUE 0.921 35.000 0.003 0.002 Y NA
 3549198 3549199 mma_0318 mma_0319 thiE uvrD FALSE 0.094 155.000 0.007 1.000 N NA
 3549200 3549201 mma_0320 mma_0321   thrB TRUE 0.982 0.000 0.209 NA   NA
 3549201 3549202 mma_0321 mma_0322 thrB   TRUE 0.740 92.000 0.204 NA   NA
 3549203 3549204 mma_0323 mma_0324 polA   FALSE 0.243 105.000 0.006 1.000 N NA
 3549204 3549205 mma_0324 mma_0325     FALSE 0.102 236.000 0.117 1.000 N NA
 3549206 3549207 mma_0326 mma_0327 sseA2   TRUE 0.707 24.000 0.025 NA   NA
 3549207 3549208 mma_0327 mma_0328     FALSE 0.365 139.000 0.085 NA   NA
 3549209 3549210 mma_0329 mma_0330 xseB ispA TRUE 0.756 48.000 0.177 1.000 N NA
 3549210 3549211 mma_0330 mma_0331 ispA dxs TRUE 0.994 2.000 0.246 1.000 Y NA
 3549211 3549212 mma_0331 mma_0332 dxs   TRUE 0.622 53.000 0.069 1.000   NA
 3549214 3549215 mma_0334 mma_0335   glcD1 FALSE 0.066 168.000 0.000 1.000 N NA
 3549215 3549216 mma_0335 mma_0336 glcD1 glcE TRUE 0.955 29.000 0.044 0.002 Y NA
 3549216 3549217 mma_0336 mma_0337 glcE glcF TRUE 0.936 44.000 0.057 0.002 Y NA
 3549218 3549219 mma_0338 mma_0339 bsaA pilU1 TRUE 0.947 -3.000 0.041 1.000 N NA
 3549219 3549220 mma_0339 mma_0340 pilU1 pilT TRUE 0.890 102.000 0.079 0.021 Y NA
 3549221 3549222 mma_0341 mma_0342   proC TRUE 0.992 -10.000 0.357 NA   NA
 3549223 3549224 mma_0343 mma_0344     FALSE 0.104 160.000 0.000 NA   NA
 3549224 3549225 mma_0344 mma_0345     TRUE 0.710 14.000 0.000 NA   NA
 3549225 3549226 mma_0345 mma_0346     TRUE 0.480 38.000 0.000 NA   NA
 3549226 3549227 mma_0346 mma_0347   ubiA TRUE 0.821 16.000 0.000 0.076   NA
 3549227 3549228 mma_0347 mma_0348 ubiA oxyR FALSE 0.359 51.000 0.009 1.000 N NA
 3549228 3549229 mma_0348 mma_0349 oxyR recG TRUE 0.978 11.000 0.117 1.000 Y NA
 3549230 3549231 mma_0350 mma_0351 queA tgt TRUE 0.999 -6.000 0.360 0.001 Y NA
 3549231 3549232 mma_0351 mma_0352 tgt yajC TRUE 0.774 104.000 0.325 NA N NA
 3549232 3549233 mma_0352 mma_0353 yajC secD TRUE 0.858 80.000 0.083 NA Y NA
 3549233 3549234 mma_0353 mma_0354 secD secF TRUE 0.945 123.000 0.332 0.001 Y NA
 3549235 3549236 mma_0355 mma_0356     TRUE 0.690 85.000 0.143 NA   NA
 3549236 3549237 mma_0356 mma_0357     TRUE 0.683 65.000 0.120 NA   NA
 3549237 3549238 mma_0357 mma_0358   cybB1 TRUE 0.691 27.000 0.027 NA   NA
 3549238 3549239 mma_0358 mma_0359 cybB1 purB FALSE 0.216 104.000 0.002 1.000 N NA
 3549241 3549242 mma_0361 mma_0362 bfr1 bfr2 FALSE 0.370 212.000 0.000 0.001 Y NA
 3549242 3549243 mma_0362 mma_0363 bfr2 exbD3 FALSE 0.013 313.000 0.000 1.000 N NA
 3549243 3549244 mma_0363 mma_0364 exbD3 exbB2 TRUE 0.999 0.000 0.667 0.080 Y NA
 3549244 3549245 mma_0364 mma_0365 exbB2 tonB TRUE 0.888 13.000 0.033 0.014 N NA
 3549245 3549246 mma_0365 mma_0366 tonB bfd TRUE 0.835 12.000 0.053 NA N NA
 3549246 3549247 mma_0366 mma_0367 bfd   FALSE 0.315 97.000 0.000 NA   NA
 3549247 3549248 mma_0367 mma_0368     FALSE 0.010 514.000 0.000 NA   NA
 3549249 3549250 mma_0369 mma_0370     TRUE 0.913 6.000 0.056 NA   NA
 3549250 3549251 mma_0370 mma_0371     TRUE 0.950 0.000 0.050 NA   NA
 3549251 3549252 mma_0371 mma_0372     TRUE 0.990 7.000 0.740 NA   NA
 3549253 3549254 mma_0373 mma_0374 trmU   TRUE 0.980 -7.000 0.158 1.000 N NA
 3549255 3549256 mma_0375 mma_0376 panD pntA FALSE 0.163 125.000 0.004 1.000 N NA
 3549256 3549257 mma_0376 mma_0377 pntA pntB TRUE 0.998 11.000 0.745 0.001 Y NA
 3549259 3549260 mma_0379 mma_0380 gcl gip TRUE 0.890 2.000 0.007 1.000   NA
 3549260 3549261 mma_0380 mma_0381 gip garR2 FALSE 0.269 98.000 0.007 1.000 N NA
 3549261 3549262 mma_0381 mma_0382 garR2 ttuD TRUE 0.731 89.000 0.222 1.000 N NA
 3549262 3549263 mma_0382 mma_0383 ttuD pyk TRUE 0.923 77.000 0.222 1.000 Y NA
 3549263 3549264 mma_0383 mma_0384 pyk thiC FALSE 0.009 407.000 0.000 1.000 N NA
 3549264 3549265 mma_0384 mma_0385 thiC thiS2 TRUE 0.981 0.000 0.003 1.000 Y NA
 3549265 3549266 mma_0385 mma_0386 thiS2 thiG2 TRUE 0.890 75.000 0.130 1.000 Y NA
 3549266 3549267 mma_0386 mma_0387 thiG2 qor1 FALSE 0.194 114.000 0.003 1.000 N NA
 3549269 3549270 mma_0389 mma_0390   sucC FALSE 0.013 411.000 0.000 1.000   NA
 3549270 3549271 mma_0390 mma_0391 sucC sucD TRUE 0.988 3.000 0.006 0.001 Y NA
 3549271 3549272 mma_0391 mma_0392 sucD   FALSE 0.069 218.000 0.000 0.059 N NA
 3549272 3549273 mma_0392 mma_0393   apbA TRUE 0.782 20.000 0.059 1.000 N NA
 3549273 3549274 mma_0393 mma_0394 apbA tctC2 FALSE 0.008 666.000 0.000 1.000   NA
 3549274 3549275 mma_0394 mma_0395 tctC2 tctB2 TRUE 0.767 116.000 0.333 NA   NA
 3549275 3549276 mma_0395 mma_0396 tctB2 tctA2 TRUE 0.851 73.000 0.364 NA   NA
 3549276 3549277 mma_0396 mma_0397 tctA2   FALSE 0.034 238.000 0.000 NA   NA
 3549279 3549280 mma_0399 mma_0400 oxc   FALSE 0.096 252.000 0.134 1.000 N NA
 3549280 3549281 mma_0400 mma_0401   caiB1 FALSE 0.078 1087.000 0.000 0.002 Y NA
 3549281 3549282 mma_0401 mma_0402 caiB1 fdhB1 FALSE 0.045 745.000 0.000 1.000 Y NA
 3549282 3549283 mma_0402 mma_0403 fdhB1 fdhA1 TRUE 0.973 32.000 0.571 0.005   NA
 3549288 3549289 mma_0408 mma_0409 glnB1 czcA2 TRUE 0.851 72.000 0.417 1.000 N NA
 3549289 3549290 mma_0409 mma_0410 czcA2 czcB2 TRUE 0.974 5.000 0.304 1.000 N NA
 3549290 3549291 mma_0410 mma_0411 czcB2   TRUE 0.998 -3.000 0.533 1.000 Y NA
 3549291 3549292 mma_0411 mma_0412     FALSE 0.324 89.000 0.000 NA   NA
 3549292 3549293 mma_0412 mma_0413   ubiH FALSE 0.057 196.000 0.000 NA   NA
 3549293 3549294 mma_0413 mma_0414 ubiH pepP TRUE 0.969 11.000 0.396 1.000 N NA
 3549294 3549295 mma_0414 mma_0415 pepP   TRUE 0.964 -3.000 0.074 1.000 N NA
 3549295 3549296 mma_0415 mma_0416     TRUE 0.905 100.000 0.642 NA   NA
 3549297 3549298 mma_0417 mma_0418 ostA surA TRUE 0.892 23.000 0.168 1.000   NA
 3549298 3549299 mma_0418 mma_0419 surA pdxA TRUE 0.960 28.000 0.561 1.000   NA
 3549299 3549300 mma_0419 mma_0420 pdxA ksgA TRUE 0.784 45.000 0.197 1.000 N NA
 3549300 3549301 mma_0420 mma_0421 ksgA gloA1 FALSE 0.248 88.000 0.003 1.000 N NA
 3549302 3549303 mma_0422 mma_0423   plsC1 TRUE 0.892 14.000 0.099 NA   NA
 3549303 3549304 mma_0423 mma_0424 plsC1   TRUE 0.884 32.000 0.279 1.000 N NA
 3549304 3549305 mma_0424 mma_0425   glyS TRUE 0.673 54.000 0.123 1.000 N NA
 3549305 3549306 mma_0425 mma_0426 glyS glyQ TRUE 0.999 3.000 0.651 0.001 Y NA
 3549306 3549307 mma_0426 mma_0427 glyQ lnt FALSE 0.269 72.000 0.003 1.000 N NA
 3549307 3549308 mma_0427 mma_0428 lnt corC FALSE 0.337 46.000 0.000 NA N NA
 3549308 3549309 mma_0428 mma_0429 corC   TRUE 0.543 127.000 0.150 NA   NA
 3549309 3549310 mma_0429 mma_0430   phoH TRUE 0.994 -16.000 0.457 NA   NA
 3549310 3549311 mma_0430 mma_0431 phoH miaB TRUE 0.759 62.000 0.220 1.000 N NA
 3549311 3549312 mma_0431 mma_0432 miaB   TRUE 0.669 25.000 0.015 NA   NA
 3549312 3549313 mma_0432 mma_0433   usp3 FALSE 0.031 243.000 0.000 NA   NA
 3549315 3549316 mma_0435 mma_0436 glcD2   FALSE 0.030 220.000 0.000 1.000 N NA
 3549318 3549319 mma_0438 mma_0439 tctA3 tctB3 TRUE 0.981 10.000 0.500 NA   NA
 3549319 3549320 mma_0439 mma_0440 tctB3 tctC3 TRUE 0.892 76.000 0.500 NA   NA
 3549321 3549322 mma_0441 mma_0442     FALSE 0.134 146.000 0.000 NA   NA
 3549322 3549323 mma_0442 mma_0443     TRUE 0.726 62.000 0.154 NA   NA
 3549323 3549324 mma_0443 mma_0444     TRUE 0.881 41.000 0.294 NA   NA
 3549324 3549325 mma_0444 mma_0445     TRUE 0.536 112.000 0.094 NA   NA
 3549325 3549326 mma_0445 mma_0446   soxC TRUE 0.659 94.000 0.125 1.000   NA
 3549326 3549327 mma_0446 mma_0447 soxC   TRUE 0.990 -16.000 0.179 0.068   NA
 3549327 3549328 mma_0447 mma_0448   azu1 TRUE 0.931 89.000 0.167 0.026 Y NA
 3549328 3549329 mma_0448 mma_0449 azu1   FALSE 0.240 141.000 0.031 NA   NA
 3549329 3549330 mma_0449 mma_0450   soxZ TRUE 0.879 43.000 0.312 NA   NA
 3549330 3549331 mma_0450 mma_0451 soxZ soxA TRUE 0.774 119.000 0.370 NA   NA
 3549331 3549332 mma_0451 mma_0452 soxA   TRUE 0.986 28.000 0.926 0.012   NA
 3549332 3549333 mma_0452 mma_0453   soxB TRUE 0.786 117.000 0.370 1.000   NA
 3549333 3549334 mma_0453 mma_0454 soxB   TRUE 0.913 12.000 0.111 NA   NA
 3549334 3549335 mma_0454 mma_0455     FALSE 0.369 57.000 0.000 NA   NA
 3549335 3549336 mma_0455 mma_0456     TRUE 0.981 0.000 0.000 NA Y NA
 3549336 3549337 mma_0456 mma_0457     FALSE 0.241 98.000 0.000 NA N NA
 3549337 3549338 mma_0457 mma_0458     TRUE 0.986 0.000 0.271 NA   NA
 3549338 3549339 mma_0458 mma_0459     TRUE 0.908 11.000 0.094 NA   NA
 3549339 3549340 mma_0459 mma_0460     FALSE 0.027 259.000 0.000 NA   NA
 3549341 3549342 mma_tRNA05 mma_0461   miaA FALSE 0.186 131.000 0.000 NA   NA
 3549342 3549343 mma_0461 mma_0462 miaA mutL TRUE 0.971 2.000 0.188 1.000 N NA
 3549345 3549346 mma_0464 mma_0465 amiA   TRUE 0.966 -36.000 0.063 NA   NA
 3549346 3549347 mma_0465 mma_0466     FALSE 0.074 178.000 0.003 NA   NA
 3549347 3549348 mma_0466 mma_0467   dctR FALSE 0.362 107.000 0.018 1.000   NA
 3549348 3549349 mma_0467 mma_0468 dctR   TRUE 0.983 94.000 0.759 0.033 Y NA
 3549350 3549351 mma_0469 mma_0470 dctP tctC4 FALSE 0.028 427.000 0.000 0.016   NA
 3549351 3549352 mma_0470 mma_0471 tctC4 tctB4 TRUE 0.561 179.000 0.500 NA   NA
 3549352 3549353 mma_0471 mma_0472 tctB4 tctA4 TRUE 0.983 13.000 0.667 NA   NA
 3549353 3549354 mma_0472 mma_0473 tctA4 ogt2 FALSE 0.009 546.000 0.000 NA   NA
 3549354 3549355 mma_0473 mma_0474 ogt2 xerD TRUE 0.991 -3.000 0.046 1.000 Y NA
 3549357 3549358 mma_0476 mma_0477     FALSE 0.044 313.000 0.061 NA   NA
 3549360 3549361 mma_0479 mma_0480 nasT nasF FALSE 0.084 333.000 0.218 NA N NA
 3549361 3549362 mma_0480 mma_0481 nasF nasE TRUE 0.994 10.000 0.514 NA Y NA
 3549362 3549363 mma_0481 mma_0482 nasE nasD TRUE 0.981 47.000 0.396 0.001 Y NA
 3549363 3549364 mma_0482 mma_0483 nasD nirB TRUE 0.646 43.000 0.074 1.000 N NA
 3549364 3549365 mma_0483 mma_0484 nirB nirD TRUE 0.972 30.000 0.539 0.001 N NA
 3549365 3549366 mma_0484 mma_0485 nirD nasA TRUE 0.993 -3.000 0.294 0.068 N NA
 3549366 3549367 mma_0485 mma_0486 nasA trpD2 TRUE 0.605 63.000 0.095 1.000 N NA
 3549367 3549368 mma_0486 mma_0487 trpD2 cobA TRUE 0.913 -22.000 0.010 1.000 N NA
 3549368 3549369 mma_0487 mma_0488 cobA   FALSE 0.353 72.000 0.004 1.000   NA
 3549369 3549370 mma_0488 mma_0489   gloA2 FALSE 0.324 93.000 0.000 1.000   NA
 3549370 3549371 mma_0489 mma_0490 gloA2 rpsU FALSE 0.128 149.000 0.000 1.000   NA
 3549371 3549372 mma_0490 mma_0491 rpsU   TRUE 0.675 129.000 0.173 0.027   NA
 3549372 3549373 mma_0491 mma_0492   dnaG TRUE 0.865 26.000 0.137 1.000   NA
 3549373 3549374 mma_0492 mma_0493 dnaG rpoD FALSE 0.251 219.000 0.299 1.000 N NA
 3549374 3549375 mma_0493 mma_tRNA06 rpoD   TRUE 0.667 18.000 0.000 NA   NA
 3549375 3549376 mma_tRNA06 mma_0494     FALSE 0.090 168.000 0.000 NA   NA
 3549380 3549381 mma_tRNA07 mma_0498     FALSE 0.035 234.000 0.000 NA   NA
 3549381 3549382 mma_0498 mma_0499     FALSE 0.032 241.000 0.000 NA   NA
 3549382 3549383 mma_0499 mma_0500     FALSE 0.055 179.000 0.000 1.000 N NA
 3549384 3549385 mma_0501 mma_0502     TRUE 0.926 -7.000 0.000 1.000   NA
 3549387 3549388 mma_0504 mma_0505 guaD xdhC1 FALSE 0.298 54.000 0.000 NA N NA
 3549388 3549389 mma_0505 mma_0506 xdhC1 xdhB TRUE 0.901 10.000 0.096 NA N NA
 3549389 3549390 mma_0506 mma_0507 xdhB xdhA TRUE 0.978 19.000 0.085 0.001 Y NA
 3549390 3549391 mma_0507 mma_0508 xdhA   FALSE 0.310 118.000 0.017 1.000   NA
 3549391 3549392 mma_0508 mma_0509     FALSE 0.054 200.000 0.000 1.000   NA
 3549392 3549393 mma_0509 mma_0510   tar7 FALSE 0.015 294.000 0.000 1.000 N NA
 3549393 3549394 mma_0510 mma_0511 tar7   TRUE 0.625 15.000 0.000 1.000 N NA
 3549394 3549395 mma_0511 mma_0512   pbuX2 FALSE 0.238 102.000 0.000 1.000 N NA
 3549395 3549396 mma_0512 mma_0513 pbuX2   FALSE 0.022 245.000 0.000 1.000 N NA
 3549397 3549398 mma_0514 mma_0515   hutH FALSE 0.409 49.000 0.000 1.000   NA
 3549399 3549400 mma_0516 mma_0517     FALSE 0.160 126.000 0.000 1.000 N NA
 3549403 3549404 mma_0520 mma_0521     TRUE 0.776 26.000 0.000 0.017   NA
 3549404 3549405 mma_0521 mma_0522     TRUE 0.772 10.000 0.000 1.000   NA
 3549405 3549406 mma_0522 mma_0523   cysC TRUE 0.786 9.000 0.000 1.000   NA
 3549407 3549408 mma_0524 mma_0525   cfa1 FALSE 0.106 159.000 0.000 NA   NA
 3549409 3549410 mma_0526 mma_0527   aer FALSE 0.103 164.000 0.017 1.000 N NA
 3549410 3549411 mma_0527 mma_0528 aer   FALSE 0.013 323.000 0.000 1.000 N NA
 3549412 3549413 mma_0529 mma_0530     TRUE 0.848 4.000 0.017 1.000 N NA
 3549415 3549416 mma_0532 mma_0533 kdsA   FALSE 0.345 76.000 0.004 NA   NA
 3549417 3549418 mma_0534 mma_0535 dnaE1 msbA FALSE 0.400 43.000 0.008 1.000 N NA
 3549418 3549419 mma_0535 mma_0536 msbA   TRUE 0.461 41.000 0.000 NA   NA
 3549420 3549421 mma_0537 mma_0538 cafA maf1 TRUE 0.992 -3.000 0.417 NA N NA
 3549421 3549422 mma_0538 mma_0539 maf1   TRUE 0.913 8.000 0.074 NA   NA
 3549422 3549423 mma_0539 mma_0540     TRUE 0.717 13.000 0.003 NA   NA
 3549423 3549424 mma_0540 mma_0541   nadD TRUE 0.947 0.000 0.045 NA   NA
 3549424 3549425 mma_0541 mma_0542 nadD hemF TRUE 0.987 2.000 0.066 1.000 Y NA
 3549425 3549426 mma_0542 mma_0543 hemF purD TRUE 0.554 43.000 0.043 1.000 N NA
 3549426 3549427 mma_0543 mma_0544 purD   FALSE 0.328 124.000 0.034 NA   NA
 3549430 3549431 mma_0547 mma_0548 acpD1 ribA FALSE 0.305 86.000 0.010 1.000 N NA
 3549431 3549432 mma_0548 mma_0549 ribA   FALSE 0.387 75.000 0.010 NA   NA
 3549432 3549433 mma_0549 mma_0550     TRUE 0.904 10.000 0.077 NA   NA
 3549433 3549434 mma_0550 mma_0551   qor2 TRUE 0.533 35.000 0.021 1.000 N NA
 3549436 3549437 mma_0553 mma_0554 pepN fbp TRUE 0.508 91.000 0.071 1.000 N NA
 3549437 3549438 mma_0554 mma_rRNA04 fbp   FALSE 0.009 552.000 0.000 NA   NA
 3549438 3549439 mma_rRNA04 mma_tRNA08     FALSE 0.221 123.000 0.000 NA   NA
 3549439 3549440 mma_tRNA08 mma_tRNA09     TRUE 0.616 23.000 0.000 NA   NA
 3549440 3549441 mma_tRNA09 mma_rRNA05     FALSE 0.019 306.000 0.000 NA   NA
 3549441 3549442 mma_rRNA05 mma_rRNA06     FALSE 0.046 211.000 0.000 NA   NA
 3549442 3549443 mma_rRNA06 mma_0555   atoB FALSE 0.009 587.000 0.000 NA   NA
 3549443 3549444 mma_0555 mma_0556 atoB phbB TRUE 0.919 45.000 0.125 1.000 Y NA
 3549445 3549446 mma_0557 mma_0558     TRUE 0.563 57.000 0.071 1.000 N NA
 3549446 3549447 mma_0558 mma_0559     FALSE 0.388 53.000 0.000 1.000   NA
 3549447 3549448 mma_0559 mma_0560     TRUE 0.554 30.000 0.005 NA   NA
 3549448 3549449 mma_0560 mma_0561     TRUE 0.670 32.000 0.038 NA   NA
 3549449 3549450 mma_0561 mma_0562   sbcB FALSE 0.363 99.000 0.011 NA   NA
 3549450 3549451 mma_0562 mma_0563 sbcB   FALSE 0.404 37.000 0.000 1.000 N NA
 3549451 3549452 mma_0563 mma_0564     TRUE 0.952 10.000 0.000 1.000 Y NA
 3549452 3549453 mma_0564 mma_0565     TRUE 0.995 -3.000 0.500 NA   NA
 3549453 3549454 mma_0565 mma_0566     FALSE 0.427 182.000 0.333 NA   NA
 3549454 3549455 mma_0566 mma_0567     FALSE 0.343 78.000 0.000 NA   NA
 3549455 3549456 mma_0567 mma_0568     FALSE 0.399 72.000 0.012 NA   NA
 3549456 3549457 mma_0568 mma_0569   rhtB FALSE 0.063 187.000 0.000 NA   NA
 3549459 3549460 mma_0570 mma_0571 penP   TRUE 0.690 24.000 0.019 NA   NA
 3549464 3549465 mma_0575 mma_0576     TRUE 0.710 14.000 0.000 NA   NA
 3549465 3549466 mma_0576 mma_0577     TRUE 0.922 -3.000 0.000 NA   NA
 3549466 3549467 mma_0577 mma_0578   dam TRUE 0.723 13.000 0.000 NA   NA
 3549467 3549468 mma_0578 mma_0579 dam glnS TRUE 0.894 -3.000 0.000 1.000 N NA
 3549468 3549469 mma_0579 mma_0580 glnS   FALSE 0.048 207.000 0.000 NA   NA
 3549469 3549470 mma_0580 mma_0581   ggt1 FALSE 0.079 175.000 0.000 NA   NA
 3549471 3549472 mma_0582 mma_0583 glpQ alaS FALSE 0.219 104.000 0.002 1.000 N NA
 3549472 3549473 mma_0583 mma_0584 alaS   FALSE 0.053 252.000 0.006 0.042 N NA
 3549473 3549474 mma_0584 mma_0585   etfB FALSE 0.027 228.000 0.000 1.000 N NA
 3549474 3549475 mma_0585 mma_0586 etfB etfA TRUE 0.947 63.000 0.200 0.026 Y NA
 3549475 3549476 mma_0586 mma_0587 etfA   TRUE 0.531 141.000 0.118 0.012 N NA
 3549477 3549478 mma_0588 mma_0589   amtB2 TRUE 0.957 -3.000 0.041 NA   NA
 3549478 3549479 mma_0589 mma_0590 amtB2   FALSE 0.045 212.000 0.000 NA   NA
 3549480 3549481 mma_0591 mma_0592 rpsP rimM TRUE 0.986 28.000 0.342 0.017 Y NA
 3549481 3549482 mma_0592 mma_0593 rimM trmD TRUE 0.990 27.000 0.672 1.000 Y NA
 3549482 3549483 mma_0593 mma_0594 trmD rplS TRUE 0.952 113.000 0.567 1.000 Y NA
 3549483 3549484 mma_0594 mma_0595 rplS   FALSE 0.041 267.000 0.027 1.000   NA
 3549484 3549485 mma_0595 mma_0596   cobD1 TRUE 0.689 121.000 0.254 1.000   NA
 3549485 3549486 mma_0596 mma_0597 cobD1   FALSE 0.152 128.000 0.000 1.000 N NA
 3549487 3549488 mma_0598 mma_0599     TRUE 0.922 -3.000 0.000 NA   NA
 3549489 3549490 mma_0600 mma_0601 dacB ggt2 FALSE 0.017 276.000 0.000 1.000 N NA
 3549491 3549492 mma_0602 mma_0603     TRUE 0.960 0.000 0.074 NA   NA
 3549492 3549493 mma_0603 mma_0604   lemA2 TRUE 0.841 14.000 0.049 NA   NA
 3549493 3549494 mma_0604 mma_0605 lemA2   FALSE 0.354 65.000 0.000 NA   NA
 3549496 3549497 mma_0607 mma_0608 cinA1 pgpA TRUE 0.931 11.000 0.141 NA   NA
 3549497 3549498 mma_0608 mma_0609 pgpA thiL TRUE 0.984 -3.000 0.206 1.000 N NA
 3549498 3549499 mma_0609 mma_0610 thiL rubB FALSE 0.142 144.000 0.003 1.000   NA
 3549502 3549503 mma_0613 mma_0614     FALSE 0.010 473.000 0.000 NA   NA
 3549503 3549504 mma_0614 mma_0615   hmp TRUE 0.820 88.000 0.367 NA N NA
 3549504 3549505 mma_0615 mma_0616 hmp   FALSE 0.006 660.000 0.000 1.000 N NA
 3549505 3549506 mma_0616 mma_0617     TRUE 0.916 -87.000 0.000 NA   NA
 3549506 3549507 mma_0617 mma_0618   rscB TRUE 0.508 34.000 0.000 NA   NA
 3549508 3549509 mma_tRNA11 mma_0619     FALSE 0.275 109.000 0.000 NA   NA
 3549509 3549510 mma_0619 mma_0620   rpmE FALSE 0.164 171.000 0.067 NA N NA
 3549512 3549513 mma_0622 mma_0623 rho trxA TRUE 0.539 109.000 0.087 1.000   NA
 3549514 3549515 mma_0624 mma_0625     TRUE 0.962 27.000 0.173 NA Y NA
 3549515 3549516 mma_0625 mma_0626     FALSE 0.087 171.000 0.000 NA   NA
 3549516 3549517 mma_0626 mma_0627     TRUE 0.922 -3.000 0.000 NA   NA
 3549517 3549518 mma_0627 mma_0628     FALSE 0.015 345.000 0.000 NA   NA
 3549520 3549521 mma_0630 mma_0631     TRUE 0.990 -10.000 0.294 NA   NA
 3549521 3549522 mma_0631 mma_0632   wza TRUE 0.944 38.000 0.176 NA Y NA
 3549522 3549523 mma_0632 mma_0633 wza   TRUE 0.988 14.000 0.333 1.000 Y NA
 3549523 3549524 mma_0633 mma_0634     TRUE 0.912 34.000 0.385 1.000 N NA
 3549524 3549525 mma_0634 mma_0635     TRUE 0.900 9.000 0.087 NA N NA
 3549525 3549526 mma_0635 mma_0636     TRUE 0.889 13.000 0.087 NA   NA
 3549526 3549527 mma_0636 mma_0637     TRUE 0.708 56.000 0.125 NA   NA
 3549527 3549528 mma_0637 mma_0638     TRUE 0.590 108.000 0.111 NA   NA
 3549528 3549529 mma_0638 mma_0639     TRUE 0.866 21.000 0.111 NA   NA
 3549529 3549530 mma_0639 mma_0640   cysE1 TRUE 0.962 0.000 0.083 NA   NA
 3549530 3549531 mma_0640 mma_0641 cysE1   TRUE 0.950 -3.000 0.044 1.000 N NA
 3549531 3549532 mma_0641 mma_0642     TRUE 0.996 -3.000 0.222 NA Y NA
 3549532 3549533 mma_0642 mma_0643     TRUE 0.991 -10.000 0.045 NA Y NA
 3549533 3549534 mma_0643 mma_0644   galE FALSE 0.172 237.000 0.000 1.000 Y NA
 3549534 3549535 mma_0644 mma_0645 galE mpg TRUE 0.839 53.000 0.037 1.000 Y NA
 3549535 3549536 mma_0645 mma_0646 mpg xanB TRUE 0.940 18.000 0.029 1.000 Y NA
 3549536 3549537 mma_0646 mma_0647 xanB   TRUE 0.986 0.000 0.286 NA   NA
 3549537 3549538 mma_0647 mma_0648     TRUE 0.934 6.000 0.091 NA   NA
 3549539 3549540 mma_0649 mma_0650   lgt TRUE 0.595 26.000 0.003 1.000   NA
 3549540 3549541 mma_0650 mma_0651 lgt   TRUE 0.790 4.000 0.003 1.000 N NA
 3549544 3549545 mma_0654 mma_0655   cyt FALSE 0.228 121.000 0.000 NA   NA
 3549545 3549546 mma_0655 mma_0656 cyt livK2 FALSE 0.006 629.000 0.000 1.000 N NA
 3549546 3549547 mma_0656 mma_0657 livK2 livH2 TRUE 0.967 92.000 0.600 1.000 Y NA
 3549547 3549548 mma_0657 mma_0658 livH2 livM2 TRUE 0.999 2.000 0.800 0.061 Y NA
 3549548 3549549 mma_0658 mma_0659 livM2 livG2 TRUE 0.997 0.000 0.400 1.000 Y NA
 3549549 3549550 mma_0659 mma_0660 livG2 livF2 TRUE 0.999 -3.000 0.704 0.022 Y NA
 3549550 3549551 mma_0660 mma_0661 livF2   TRUE 0.895 16.000 0.148 1.000 N NA
 3549551 3549552 mma_0661 mma_0662   amaB2 TRUE 0.957 15.000 0.364 1.000 N NA
 3549552 3549553 mma_0662 mma_0663 amaB2   TRUE 0.844 51.000 0.286 1.000   NA
 3549553 3549554 mma_0663 mma_0664     FALSE 0.011 448.000 0.000 1.000   NA
 3549557 3549558 mma_0667 mma_0668 dadA2   TRUE 0.821 137.000 0.667 NA   NA
 3549558 3549559 mma_0668 mma_0669   holC TRUE 0.927 -3.000 0.006 NA   NA
 3549559 3549560 mma_0669 mma_0670 holC   FALSE 0.370 59.000 0.000 1.000   NA
 3549560 3549561 mma_0670 mma_0671   prlC TRUE 0.466 41.000 0.000 1.000   NA
 3549561 3549562 mma_0671 mma_0672 prlC folD TRUE 0.861 0.000 0.000 1.000 N NA
 3549563 3549564 mma_0673 mma_0674 aceE1 aceF TRUE 0.811 109.000 0.075 1.000 Y NA
 3549564 3549565 mma_0674 mma_0675 aceF   TRUE 0.772 17.000 0.044 1.000 N NA
 3549565 3549566 mma_0675 mma_0676   lpdA FALSE 0.443 89.000 0.046 1.000 N NA
 3549566 3549567 mma_0676 mma_0677 lpdA   FALSE 0.228 121.000 0.000 NA   NA
 3549567 3549568 mma_0677 mma_0678     TRUE 0.461 41.000 0.000 NA   NA
 3549568 3549569 mma_0678 mma_0679     FALSE 0.344 75.000 0.000 NA   NA
 3549569 3549570 mma_0679 mma_0680     FALSE 0.423 46.000 0.000 NA   NA
 3549571 3549572 mma_0681 mma_0682 tesA1 spr TRUE 0.741 7.000 0.000 NA N NA
 3549572 3549573 mma_0682 mma_0683 spr argM TRUE 0.856 6.000 0.032 NA N NA
 3549573 3549574 mma_0683 mma_0684 argM ascD FALSE 0.082 253.000 0.040 0.025 N NA
 3549575 3549576 mma_0685 mma_0686   terC2 FALSE 0.007 480.000 0.000 1.000 N NA
 3549577 3549578 mma_0687 mma_0688   gspE FALSE 0.383 53.000 0.000 NA   NA
 3549578 3549579 mma_0688 mma_0689 gspE   TRUE 0.713 56.000 0.164 1.000 N NA
 3549579 3549580 mma_0689 mma_0690   mug TRUE 0.738 24.000 0.053 NA N NA
 3549581 3549582 mma_0691 mma_0692   eco FALSE 0.344 73.000 0.000 NA   NA
 3549583 3549584 mma_0693 mma_0694     TRUE 0.923 -10.000 0.000 NA   NA
 3549584 3549585 mma_0694 mma_0695     FALSE 0.367 58.000 0.000 NA   NA
 3549585 3549586 mma_0695 mma_0696     FALSE 0.095 165.000 0.000 NA   NA
 3549586 3549587 mma_0696 mma_0697   htpG FALSE 0.021 289.000 0.000 NA   NA
 3549587 3549588 mma_0697 mma_0698 htpG   FALSE 0.137 157.000 0.028 1.000 N NA
 3549589 3549590 mma_0699 mma_0700     TRUE 0.805 18.000 0.045 NA   NA
 3549590 3549591 mma_0700 mma_0701   tdcF2 FALSE 0.201 203.000 0.159 NA   NA
 3549591 3549592 mma_0701 mma_0702 tdcF2 aro8 TRUE 0.742 68.000 0.216 NA N NA
 3549592 3549593 mma_0702 mma_0703 aro8   FALSE 0.019 259.000 0.000 1.000 N NA
 3549593 3549594 mma_0703 mma_0704     FALSE 0.028 255.000 0.000 NA   NA
 3549595 3549596 mma_0705 mma_0706   parC TRUE 0.710 14.000 0.000 NA   NA
 3549596 3549597 mma_0706 mma_0707 parC parE TRUE 0.951 44.000 0.106 0.002 Y NA
 3549599 3549600 mma_0709 mma_0710     TRUE 0.936 31.000 0.431 NA   NA
 3549601 3549602 mma_0711 mma_0712   cytc553 FALSE 0.101 172.000 0.026 NA N NA
 3549602 3549603 mma_0712 mma_0713 cytc553   TRUE 0.997 12.000 0.688 0.012 Y NA
 3549606 3549607 mma_0716 mma_0717 nth rnfB TRUE 0.928 1.000 0.048 1.000 N NA
 3549607 3549608 mma_0717 mma_0718 rnfB depA FALSE 0.288 105.000 0.014 1.000 N NA
 3549608 3549609 mma_0718 mma_0719 depA fdxA1 FALSE 0.030 220.000 0.000 1.000 N NA
 3549610 3549611 mma_0720 mma_0721 arsB1   TRUE 0.955 11.000 0.283 1.000 N NA
 3549611 3549612 mma_0721 mma_0722     TRUE 0.908 5.000 0.045 NA   NA
 3549613 3549614 mma_0723 mma_0724   fkpA FALSE 0.435 62.000 0.015 1.000   NA
 3549615 3549616 mma_0725 mma_0726     TRUE 0.727 17.000 0.011 1.000   NA
 3549620 3549621 mma_0730 mma_0731   pbpG1 TRUE 0.507 135.000 0.160 NA   NA
 3549621 3549622 mma_0731 mma_0732 pbpG1   FALSE 0.334 84.000 0.000 NA   NA
 3549625 3549626 mma_0735 mma_0736   tas FALSE 0.343 79.000 0.000 NA   NA
 3549627 3549628 mma_0737 mma_0738 sbp ssuE TRUE 0.790 25.000 0.060 1.000   NA
 3549628 3549629 mma_0738 mma_0739 ssuE ssuA1 TRUE 0.540 136.000 0.193 1.000   NA
 3549629 3549630 mma_0739 mma_0740 ssuA1 ssuD1 TRUE 0.610 66.000 0.102 1.000 N NA
 3549630 3549631 mma_0740 mma_0741 ssuD1 ssuC TRUE 0.967 10.000 0.340 1.000 N NA
 3549631 3549632 mma_0741 mma_0742 ssuC ssuB TRUE 0.986 15.000 0.321 1.000 Y NA
 3549632 3549633 mma_0742 mma_0743 ssuB ssuF TRUE 0.889 48.000 0.435 1.000 N NA
 3549633 3549634 mma_0743 mma_0744 ssuF   TRUE 0.612 78.000 0.109 NA N NA
 3549634 3549635 mma_0744 mma_0745     TRUE 0.988 -3.000 0.241 NA   NA
 3549636 3549637 mma_0746 mma_0747   agtX FALSE 0.272 73.000 0.000 1.000 N NA
 3549637 3549638 mma_0747 mma_0748 agtX   FALSE 0.056 194.000 0.013 1.000 N NA
 3549638 3549639 mma_0748 mma_0749     FALSE 0.023 240.000 0.000 1.000 N NA
 3549640 3549641 mma_0750 mma_0751 metE1   FALSE 0.023 282.000 0.000 NA   NA
 3549641 3549642 mma_0751 mma_0752     TRUE 0.973 -3.000 0.088 NA   NA
 3549642 3549643 mma_0752 mma_0753     TRUE 0.582 27.000 0.000 NA   NA
 3549643 3549644 mma_0753 mma_0754   fecI1 FALSE 0.329 86.000 0.000 NA   NA
 3549644 3549645 mma_0754 mma_0755 fecI1 fecR1 TRUE 0.546 21.000 0.000 NA N NA
 3549645 3549646 mma_0755 mma_0756 fecR1   TRUE 0.732 95.000 0.000 NA Y NA
 3549647 3549648 mma_0757 mma_0758     TRUE 0.900 54.000 0.522 1.000 N NA
 3549649 3549650 mma_0759 mma_0760   citB1 FALSE 0.369 57.000 0.000 NA   NA
 3549650 3549651 mma_0760 mma_0761 citB1   FALSE 0.154 142.000 0.000 1.000   NA
 3549651 3549652 mma_0761 mma_0762   fhaC2 FALSE 0.348 72.000 0.000 1.000   NA
 3549652 3549653 mma_0762 mma_0763 fhaC2   FALSE 0.068 165.000 0.000 NA N NA
 3549654 3549655 mma_0764 mma_0765 xdhC2   TRUE 0.788 13.000 0.036 1.000 N NA
 3549655 3549656 mma_0765 mma_0766   coxS TRUE 0.996 2.000 0.200 0.001 Y NA
 3549658 3549659 mma_0768 mma_0769     TRUE 0.467 40.000 0.000 NA   NA
 3549659 3549660 mma_0769 mma_0770     TRUE 0.644 20.000 0.000 NA   NA
 3549660 3549661 mma_0770 mma_0771     TRUE 0.971 -3.000 0.081 NA   NA
 3549661 3549662 mma_0771 mma_0772     TRUE 0.897 0.000 0.000 NA   NA
 3549663 3549664 mma_0773 mma_0774   cutL FALSE 0.006 592.000 0.000 1.000 N NA
 3549664 3549665 mma_0774 mma_0775 cutL cutM TRUE 0.999 -3.000 0.632 0.001 Y NA
 3549665 3549666 mma_0775 mma_0776 cutM   TRUE 0.999 -3.000 0.429 0.001 Y NA
 3549666 3549667 mma_0776 mma_0777     TRUE 0.993 -10.000 0.375 NA   NA
 3549667 3549668 mma_0777 mma_0778   livK3 FALSE 0.351 66.000 0.000 NA   NA
 3549668 3549669 mma_0778 mma_0779 livK3 livH3 TRUE 0.961 101.000 0.545 1.000 Y NA
 3549669 3549670 mma_0779 mma_0780 livH3 livM3 TRUE 0.994 3.000 0.179 0.060 Y NA
 3549670 3549671 mma_0780 mma_0781 livM3 livG3 TRUE 0.994 -3.000 0.128 1.000 Y NA
 3549671 3549672 mma_0781 mma_0782 livG3 livF3 TRUE 0.997 -58.000 0.208 0.022 Y NA
 3549672 3549673 mma_0782 mma_0783 livF3 xdhC3 TRUE 0.698 10.000 0.000 NA N NA
 3549673 3549674 mma_0783 mma_0784 xdhC3   FALSE 0.020 254.000 0.000 NA N NA
 3549674 3549675 mma_0784 mma_0785     TRUE 0.915 91.000 0.667 NA   NA
 3549675 3549676 mma_0785 mma_0786     TRUE 0.954 58.000 1.000 NA   NA
 3549676 3549677 mma_0786 mma_0787     FALSE 0.017 329.000 0.000 NA   NA
 3549677 3549678 mma_0787 mma_0788     FALSE 0.287 106.000 0.000 NA   NA
 3549679 3549680 mma_0789 mma_0790     FALSE 0.343 79.000 0.000 NA   NA
 3549680 3549681 mma_0790 mma_0791   map1 FALSE 0.108 158.000 0.000 NA   NA
 3549681 3549682 mma_0791 mma_0792 map1   TRUE 0.991 0.000 0.410 NA   NA
 3549682 3549683 mma_0792 mma_0793   copS1 FALSE 0.325 88.000 0.000 NA   NA
 3549683 3549684 mma_0793 mma_0794 copS1 copR1 TRUE 0.993 -10.000 0.000 0.003 Y NA
 3549685 3549686 mma_0795 mma_0796 copA1 copB1 TRUE 0.993 12.000 1.000 0.006 N NA
 3549686 3549687 mma_0796 mma_0797 copB1 copC1 TRUE 0.834 83.000 0.182 0.006   NA
 3549687 3549688 mma_0797 mma_0798 copC1 copD1 TRUE 0.987 4.000 0.455 1.000   NA
 3549691 3549692 mma_0801 mma_0802     FALSE 0.026 261.000 0.000 NA   NA
 3549692 3549693 mma_0802 mma_0803     TRUE 0.916 -82.000 0.000 NA   NA
 3549693 3549694 mma_0803 mma_0804     FALSE 0.016 342.000 0.000 NA   NA
 3549694 3549695 mma_0804 mma_0805     FALSE 0.315 97.000 0.000 NA   NA
 3549695 3549696 mma_0805 mma_0806     TRUE 0.925 -6.000 0.000 NA   NA
 3549696 3549697 mma_0806 mma_0807     TRUE 0.975 12.000 0.444 1.000   NA
 3549697 3549698 mma_0807 mma_0808     TRUE 0.997 -3.000 0.800 NA   NA
 3549699 3549700 mma_0809 mma_0810     FALSE 0.054 199.000 0.000 NA   NA
 3549700 3549701 mma_0810 mma_0811     TRUE 0.991 0.000 0.410 1.000   NA
 3549701 3549702 mma_0811 mma_0812   cysU1 FALSE 0.010 513.000 0.000 1.000   NA
 3549702 3549703 mma_0812 mma_0813 cysU1 cysW1 TRUE 0.998 2.000 0.935 0.001 N NA
 3549703 3549704 mma_0813 mma_0814 cysW1 cysA TRUE 0.999 -3.000 0.587 1.000 Y NA
 3549704 3549705 mma_0814 mma_0815 cysA cysB2 TRUE 0.468 64.000 0.044 1.000 N NA
 3549706 3549707 mma_0816 mma_0817 tctA5 tctB5 TRUE 0.842 4.000 0.000 NA   NA
 3549707 3549708 mma_0817 mma_0818 tctB5   FALSE 0.354 65.000 0.000 NA   NA
 3549708 3549709 mma_0818 mma_0819   mmsB TRUE 0.766 64.000 0.000 1.000 Y NA
 3549709 3549710 mma_0819 mma_0820 mmsB   FALSE 0.303 54.000 0.000 1.000 N NA
 3549710 3549711 mma_0820 mma_0821   glcG1 TRUE 0.487 37.000 0.000 NA   NA
 3549711 3549712 mma_0821 mma_0822 glcG1 tctC5 FALSE 0.343 79.000 0.000 NA   NA
 3549714 3549715 mma_0824 mma_0825   dut TRUE 0.639 20.000 0.002 1.000   NA
 3549715 3549716 mma_0825 mma_0826 dut dfp TRUE 0.788 46.000 0.201 1.000 N NA
 3549716 3549717 mma_0826 mma_0827 dfp lspA FALSE 0.413 56.000 0.024 1.000 N NA
 3549717 3549718 mma_0827 mma_0828 lspA ileS TRUE 0.507 91.000 0.071 1.000 N NA
 3549718 3549719 mma_0828 mma_0829 ileS ribF TRUE 0.787 59.000 0.254 1.000 N NA
 3549719 3549720 mma_0829 mma_0830 ribF   FALSE 0.172 142.000 0.009 NA   NA
 3549721 3549722 mma_0831 mma_0832 tktA   TRUE 0.968 -3.000 0.014 0.056   NA
 3549722 3549723 mma_0832 mma_0833   gapA TRUE 0.494 46.000 0.014 1.000   NA
 3549725 3549726 mma_0835 mma_0836     TRUE 0.877 50.000 0.358 NA   NA
 3549726 3549727 mma_0836 mma_0837   tldD TRUE 0.787 87.000 0.259 NA   NA
 3549727 3549728 mma_0837 mma_0838 tldD aroG FALSE 0.021 289.000 0.000 NA   NA
 3549729 3549730 mma_0839 mma_0840     TRUE 0.559 44.000 0.029 NA   NA
 3549731 3549732 mma_0841 mma_0842 murB   TRUE 0.693 17.000 0.006 NA   NA
 3549733 3549734 mma_0843 mma_0844 acuC hyuA TRUE 0.987 11.000 0.255 NA Y NA
 3549734 3549735 mma_0844 mma_0845 hyuA trpS FALSE 0.041 196.000 0.000 1.000 N NA
 3549735 3549736 mma_0845 mma_0846 trpS   FALSE 0.322 95.000 0.000 1.000   NA
 3549736 3549737 mma_0846 mma_0847   argG TRUE 0.608 33.000 0.019 1.000   NA
 3549737 3549738 mma_0847 mma_0848 argG argF TRUE 0.865 72.000 0.088 1.000 Y NA
 3549738 3549739 mma_0848 mma_0849 argF engC FALSE 0.270 110.000 0.003 1.000   NA
 3549739 3549740 mma_0849 mma_0850 engC pcd TRUE 0.940 0.000 0.034 1.000   NA
 3549740 3549741 mma_0850 mma_0851 pcd   TRUE 0.873 12.000 0.059 1.000   NA
 3549744 3549745 mma_0854 mma_0855     TRUE 0.792 8.000 0.000 NA   NA
 3549745 3549746 mma_0855 mma_0856     FALSE 0.428 46.000 0.000 1.000   NA
 3549747 3549748 mma_0857 mma_0858     TRUE 0.895 129.000 1.000 NA   NA
 3549749 3549750 mma_0859 mma_0860     TRUE 0.984 3.000 0.333 NA   NA
 3549750 3549751 mma_0860 mma_0861     TRUE 0.971 13.000 0.429 NA   NA
 3549753 3549754 mma_0863 mma_0864 hstK   TRUE 0.989 9.000 0.500 0.015   NA
 3549754 3549755 mma_0864 mma_0865     FALSE 0.034 206.000 0.000 NA N NA
 3549755 3549756 mma_0865 mma_0866     FALSE 0.019 306.000 0.000 NA   NA
 3549756 3549757 mma_0866 mma_0867     TRUE 0.539 75.000 0.052 NA   NA
 3549757 3549758 mma_0867 mma_0868     FALSE 0.029 249.000 0.000 NA   NA
 3549759 3549760 mma_0869 mma_0870   usp4 FALSE 0.263 112.000 0.000 NA   NA
 3549760 3549761 mma_0870 mma_0871 usp4   FALSE 0.403 97.000 0.038 1.000 N NA
 3549763 3549764 mma_0873 mma_0874   tenA1 FALSE 0.371 110.000 0.026 NA   NA
 3549764 3549765 mma_0874 mma_0875 tenA1 tenA2 TRUE 0.906 52.000 0.022 0.001 Y NA
 3549765 3549766 mma_0875 mma_0876 tenA2   FALSE 0.411 72.000 0.015 NA   NA
 3549766 3549767 mma_0876 mma_0877     FALSE 0.359 63.000 0.000 NA   NA
 3549769 3549770 mma_tRNA12 mma_0879   murI FALSE 0.278 108.000 0.000 NA   NA
 3549770 3549771 mma_0879 mma_0880 murI fumB TRUE 0.491 38.000 0.017 1.000 N NA
 3549771 3549772 mma_0880 mma_0881 fumB   TRUE 0.770 30.000 0.079 NA   NA
 3549773 3549774 mma_0882 mma_tRNA13 acs   FALSE 0.112 156.000 0.000 NA   NA
 3549774 3549775 mma_tRNA13 mma_0883   intC FALSE 0.093 166.000 0.000 NA   NA
 3549776 3549777 mma_0884 mma_0885     TRUE 0.922 -3.000 0.000 NA   NA
 3549778 3549779 mma_0886 mma_0887 shiA1   FALSE 0.267 72.000 0.000 NA N NA
 3549779 3549780 mma_0887 mma_0888     TRUE 0.912 2.000 0.019 NA   NA
 3549780 3549781 mma_0888 mma_0889     TRUE 0.690 28.000 0.029 1.000   NA
 3549785 3549786 mma_0893 mma_0894 gst2   FALSE 0.007 1043.000 0.000 NA   NA
 3549788 3549789 mma_0896 mma_0897     FALSE 0.017 333.000 0.000 1.000   NA
 3549790 3549791 mma_0898 mma_0899 dhlB   TRUE 0.474 60.000 0.025 1.000   NA
 3549791 3549792 mma_0899 mma_0900     TRUE 0.997 -3.000 0.800 NA   NA
 3549794 3549795 mma_0902 mma_0903     FALSE 0.029 250.000 0.000 NA   NA
 3549796 3549797 mma_0904 mma_0905 rpoE1   TRUE 0.995 -3.000 0.500 NA   NA
 3549797 3549798 mma_0905 mma_0906   tsr FALSE 0.017 324.000 0.000 NA   NA
 3549798 3549799 mma_0906 mma_0907 tsr   TRUE 0.768 10.000 0.000 NA   NA
 3549799 3549800 mma_0907 mma_0908     FALSE 0.085 172.000 0.000 NA   NA
 3549800 3549801 mma_0908 mma_0909     TRUE 0.977 6.000 0.000 0.031 Y NA
 3549801 3549802 mma_0909 mma_0910   tar8 FALSE 0.157 245.000 0.000 1.000 Y NA
 3549802 3549803 mma_0910 mma_0911 tar8   TRUE 0.915 20.000 0.000 1.000 Y NA
 3549804 3549805 mma_0912 mma_0913   chrR FALSE 0.034 307.000 0.053 NA N NA
 3549805 3549806 mma_0913 mma_0914 chrR   TRUE 0.590 52.000 0.053 NA   NA
 3549806 3549807 mma_0914 mma_0915     TRUE 0.644 20.000 0.000 NA   NA
 3549809 3549810 mma_0917 mma_0918     TRUE 0.962 -178.000 0.000 0.017   NA
 3549810 3549811 mma_0918 mma_0919   fabF1 FALSE 0.337 85.000 0.000 1.000   NA
 3549811 3549812 mma_0919 mma_0920 fabF1   FALSE 0.272 73.000 0.000 1.000 N NA
 3549812 3549813 mma_0920 mma_0921     FALSE 0.044 217.000 0.000 1.000   NA
 3549813 3549814 mma_0921 mma_0922     TRUE 0.567 28.000 0.000 NA   NA
 3549815 3549816 mma_0923 mma_0924     FALSE 0.008 715.000 0.000 NA   NA
 3549816 3549817 mma_0924 mma_0925     TRUE 0.737 36.000 0.080 NA   NA
 3549817 3549818 mma_0925 mma_0926     TRUE 0.994 -3.000 0.450 NA   NA
 3549818 3549819 mma_0926 mma_0927     TRUE 0.961 16.000 0.367 NA   NA
 3549819 3549820 mma_0927 mma_0928     FALSE 0.146 143.000 0.000 NA   NA
 3549820 3549821 mma_0928 mma_0929   silC1 TRUE 0.892 72.000 0.500 NA   NA
 3549821 3549822 mma_0929 mma_0930 silC1   TRUE 0.986 -3.000 0.000 1.000 Y NA
 3549822 3549823 mma_0930 mma_0931     TRUE 0.894 -3.000 0.000 1.000 N NA
 3549823 3549824 mma_0931 mma_0932     TRUE 0.986 18.000 1.000 NA   NA
 3549826 3549827 mma_0934 mma_0935     FALSE 0.325 88.000 0.000 NA   NA
 3549828 3549829 mma_0936 mma_0937     FALSE 0.021 292.000 0.000 NA   NA
 3549829 3549830 mma_0937 mma_0938     FALSE 0.108 158.000 0.000 NA   NA
 3549830 3549831 mma_0938 mma_0939   ccmH TRUE 0.992 -171.000 0.087 NA Y NA
 3549831 3549832 mma_0939 mma_0940 ccmH ccmG TRUE 0.996 -3.000 0.196 NA Y NA
 3549832 3549833 mma_0940 mma_0941 ccmG ccmF TRUE 0.999 -3.000 0.804 0.004 Y NA
 3549833 3549834 mma_0941 mma_0942 ccmF ccmE TRUE 0.998 -3.000 0.211 0.004 Y NA
 3549834 3549835 mma_0942 mma_0943 ccmE ccmD TRUE 0.991 -3.000 0.344 1.000 N NA
 3549835 3549836 mma_0943 mma_0944 ccmD ccmC TRUE 0.994 -3.000 0.501 1.000 N NA
 3549836 3549837 mma_0944 mma_0945 ccmC ccmB TRUE 0.976 17.000 0.051 0.001 Y NA
 3549837 3549838 mma_0945 mma_0946 ccmB ccmA TRUE 0.996 -3.000 0.074 0.004 Y NA
 3549838 3549839 mma_0946 mma_0947 ccmA msrA1 TRUE 0.758 69.000 0.000 1.000 Y NA
 3549839 3549840 mma_0947 mma_0948 msrA1 msrB1 TRUE 0.998 2.000 0.404 0.001 Y NA
 3549840 3549841 mma_0948 mma_0949 msrB1   FALSE 0.272 78.000 0.000 1.000 N NA
 3549841 3549842 mma_0949 mma_0950     FALSE 0.031 242.000 0.000 NA   NA
 3549842 3549843 mma_0950 mma_0951   cyp TRUE 0.838 47.000 0.250 NA   NA
 3549843 3549844 mma_0951 mma_0952 cyp cybB2 FALSE 0.020 298.000 0.000 NA   NA
 3549844 3549845 mma_0952 mma_0953 cybB2   FALSE 0.172 136.000 0.000 NA   NA
 3549845 3549846 mma_0953 mma_0954     TRUE 0.804 7.000 0.000 NA   NA
 3549846 3549847 mma_0954 mma_0955   kefB1 FALSE 0.016 286.000 0.000 1.000 N NA
 3549847 3549848 mma_0955 mma_0956 kefB1   FALSE 0.019 262.000 0.000 1.000 N NA
 3549848 3549849 mma_0956 mma_0957     FALSE 0.007 1389.000 0.000 NA   NA
 3549849 3549850 mma_0957 mma_0958     FALSE 0.030 247.000 0.000 NA   NA
 3549851 3549852 mma_0959 mma_0960     FALSE 0.006 580.000 0.000 1.000 N NA
 3549852 3549853 mma_0960 mma_0961     TRUE 0.889 -43.000 0.000 1.000 N NA
 3549853 3549854 mma_0961 mma_0962     TRUE 0.841 1.000 0.000 NA N NA
 3549854 3549855 mma_0962 mma_0963     FALSE 0.152 247.000 0.000 NA Y NA
 3549856 3549857 mma_0964 mma_0965     FALSE 0.053 180.000 0.000 1.000 N NA
 3549857 3549858 mma_0965 mma_0966   gor TRUE 0.736 93.000 0.000 1.000 Y NA
 3549858 3549859 mma_0966 mma_0967 gor   FALSE 0.158 141.000 0.000 1.000   NA
 3549859 3549860 mma_0967 mma_0968     FALSE 0.347 79.000 0.000 1.000   NA
 3549860 3549861 mma_0968 mma_0969   acpD2 TRUE 0.925 -9.000 0.000 1.000   NA
 3549861 3549862 mma_0969 mma_0970 acpD2 gst3 TRUE 0.677 60.000 0.136 1.000 N NA
 3549862 3549863 mma_0970 mma_0971 gst3 mip TRUE 0.815 27.000 0.091 NA   NA
 3549863 3549864 mma_0971 mma_0972 mip   TRUE 0.452 42.000 0.000 NA   NA
 3549864 3549865 mma_0972 mma_0973     FALSE 0.102 161.000 0.000 NA   NA
 3549865 3549866 mma_0973 mma_0974     FALSE 0.034 236.000 0.000 NA   NA
 3549866 3549867 mma_0974 mma_0975   noxC FALSE 0.026 231.000 0.000 1.000 N NA
 3549867 3549868 mma_0975 mma_0976 noxC   TRUE 0.796 46.000 0.182 NA   NA
 3549868 3549869 mma_0976 mma_0977     TRUE 0.749 93.000 0.214 NA   NA
 3549871 3549872 mma_0979 mma_0980     TRUE 0.662 23.000 0.010 NA   NA
 3549875 3549876 mma_0983 mma_0984     FALSE 0.008 648.000 0.000 NA   NA
 3549876 3549877 mma_0984 mma_0985   alpA FALSE 0.018 313.000 0.000 NA   NA
 3549877 3549878 mma_0985 mma_0986 alpA   FALSE 0.008 760.000 0.000 NA   NA
 3549879 3549880 mma_0987 mma_0988 radC1   TRUE 0.780 121.000 0.400 NA   NA
 3549880 3549881 mma_0988 mma_0989     TRUE 0.701 77.000 0.143 NA   NA
 3549881 3549882 mma_0989 mma_0990     TRUE 0.644 20.000 0.000 NA   NA
 3549884 3549885 mma_0992 mma_0993     TRUE 0.878 137.000 1.000 NA   NA
 3549885 3549886 mma_0993 mma_0994     FALSE 0.049 205.000 0.000 NA   NA
 3549886 3549887 mma_0994 mma_0995     FALSE 0.376 55.000 0.000 NA   NA
 3549887 3549888 mma_0995 mma_0996     TRUE 0.976 -13.000 0.100 NA   NA
 3549888 3549889 mma_0996 mma_0997     TRUE 0.922 -3.000 0.000 NA   NA
 3549890 3549891 mma_0998 mma_0999     FALSE 0.315 97.000 0.000 NA   NA
 3549891 3549892 mma_0999 mma_1000     TRUE 0.939 13.000 0.000 NA Y NA
 3549892 3549893 mma_1000 mma_1001     TRUE 0.951 10.000 0.000 NA Y NA
 3549893 3549894 mma_1001 mma_1002     FALSE 0.258 113.000 0.000 NA   NA
 3549894 3549895 mma_1002 mma_1003     TRUE 0.922 -3.000 0.000 NA   NA
 3549895 3549896 mma_1003 mma_1004     FALSE 0.019 308.000 0.000 NA   NA
 3549896 3549897 mma_1004 mma_1005     TRUE 0.918 -43.000 0.000 NA   NA
 3549898 3549899 mma_1006 mma_1007     TRUE 0.971 -48.000 0.007 0.004   NA
 3549899 3549900 mma_1007 mma_1008     TRUE 0.919 0.000 0.014 NA   NA
 3549900 3549901 mma_1008 mma_1009     TRUE 0.998 -7.000 0.900 NA   NA
 3549902 3549903 mma_1010 mma_1011     FALSE 0.344 73.000 0.000 NA   NA
 3549903 3549904 mma_1011 mma_1012     FALSE 0.007 1304.000 0.000 NA   NA
 3549904 3549905 mma_1012 mma_1013     FALSE 0.019 311.000 0.000 NA   NA
 3549905 3549906 mma_1013 mma_1014     TRUE 0.975 30.000 0.630 0.015   NA
 3549906 3549907 mma_1014 mma_1015     TRUE 0.994 -3.000 0.485 1.000   NA
 3549907 3549908 mma_1015 mma_1016     FALSE 0.009 630.000 0.000 NA   NA
 3549909 3549910 mma_1017 mma_1018     FALSE 0.283 64.000 0.000 1.000 N NA
 3549911 3549912 mma_1019 mma_1020   fabF2 FALSE 0.272 78.000 0.000 1.000 N NA
 3549912 3549913 mma_1020 mma_1021 fabF2 ssuA2 FALSE 0.009 404.000 0.000 1.000 N NA
 3549913 3549914 mma_1021 mma_1022 ssuA2 ssuD2 TRUE 0.906 10.000 0.102 1.000 N NA
 3549914 3549915 mma_1022 mma_1023 ssuD2   FALSE 0.006 707.000 0.000 1.000 N NA
 3549915 3549916 mma_1023 mma_1024     FALSE 0.271 79.000 0.000 1.000 N NA
 3549916 3549917 mma_1024 mma_1025     TRUE 0.997 -3.000 0.857 NA N NA
 3549917 3549918 mma_1025 mma_1026   opmR TRUE 0.891 -3.000 0.000 NA N NA
 3549918 3549919 mma_1026 mma_1027 opmR   FALSE 0.007 1188.000 0.000 1.000   NA
 3549919 3549920 mma_1027 mma_1028     FALSE 0.348 67.000 0.000 NA   NA
 3549920 3549921 mma_1028 mma_1029     TRUE 0.993 0.000 0.161 NA Y NA
 3549921 3549922 mma_1029 mma_1030     FALSE 0.092 168.000 0.000 1.000   NA
 3549925 3549926 mma_1033 mma_1035     FALSE 0.009 405.000 0.000 1.000 N NA
 3549927 3549928 mma_1034 mma_1036     FALSE 0.348 75.000 0.000 1.000   NA
 3549929 3549930 mma_1037 mma_1038   fadL FALSE 0.138 145.000 0.000 NA   NA
 3549930 3549931 mma_1038 mma_1039 fadL   FALSE 0.010 507.000 0.000 NA   NA
 3549932 3549933 mma_1040 mma_1041     FALSE 0.036 288.000 0.000 0.058 N NA
 3549935 3549936 mma_1043 mma_1044     FALSE 0.403 50.000 0.000 1.000   NA
 3549936 3549937 mma_1044 mma_1045     FALSE 0.012 420.000 0.000 NA   NA
 3549937 3549938 mma_1045 mma_1046     TRUE 0.854 51.000 0.308 NA   NA
 3549940 3549941 mma_1048 mma_1049     FALSE 0.106 159.000 0.000 NA   NA
 3549941 3549942 mma_1049 mma_1050     FALSE 0.429 45.000 0.000 NA   NA
 3549942 3549943 mma_1050 mma_1051     FALSE 0.262 113.000 0.000 1.000   NA
 3549943 3549944 mma_1051 mma_1052     TRUE 0.922 -3.000 0.000 NA   NA
 3549944 3549945 mma_1052 mma_1053   pqiA TRUE 0.988 -3.000 0.250 NA   NA
 3549945 3549946 mma_1053 mma_1054 pqiA pqiB TRUE 0.993 -13.000 0.400 NA   NA
 3549946 3549947 mma_1054 mma_1055 pqiB   TRUE 0.993 -3.000 0.391 NA   NA
 3549950 3549951 mma_1058 mma_1059     TRUE 0.810 103.000 0.333 NA   NA
 3549952 3549953 mma_1060 mma_1061     FALSE 0.319 94.000 0.000 NA   NA
 3549955 3549956 mma_1063 mma_1064 fpr   FALSE 0.008 442.000 0.000 1.000 N NA
 3549956 3549957 mma_1064 mma_1065     TRUE 0.988 12.000 0.943 1.000 N NA
 3549957 3549958 mma_1065 mma_1066     TRUE 0.956 11.000 0.286 1.000 N NA
 3549960 3549961 mma_1068 mma_1069     FALSE 0.024 276.000 0.000 NA   NA
 3549963 3549964 mma_1071 mma_1072     FALSE 0.439 103.000 0.037 NA   NA
 3549964 3549965 mma_1072 mma_1073     FALSE 0.439 75.000 0.020 1.000   NA
 3549965 3549966 mma_1073 mma_1074   prfC FALSE 0.243 118.000 0.003 1.000   NA
 3549966 3549967 mma_1074 mma_1075 prfC   FALSE 0.136 145.000 0.003 NA   NA
 3549968 3549969 mma_1076 mma_1077   nhaA TRUE 0.717 103.000 0.000 NA Y NA
 3549970 3549971 mma_1078 mma_1079 glnA   FALSE 0.160 173.000 0.048 NA   NA
 3549971 3549972 mma_1079 mma_1080   ntrB TRUE 0.588 112.000 0.122 NA   NA
 3549972 3549973 mma_1080 mma_1081 ntrB ntrC TRUE 0.978 69.000 0.587 0.099 Y NA
 3549973 3549974 mma_1081 mma_1082 ntrC   FALSE 0.015 370.000 0.000 1.000   NA
 3549974 3549975 mma_1082 mma_1083     TRUE 0.850 52.000 0.150 0.004   NA
 3549975 3549976 mma_1083 mma_1084   asdA FALSE 0.368 60.000 0.000 1.000   NA
 3549977 3549978 mma_1085 mma_1086 cheA2 cheZ1 TRUE 0.983 0.000 0.009 1.000 Y NA
 3549979 3549980 mma_1087 mma_1088 cobT cobS TRUE 0.951 20.000 0.003 0.006 Y NA
 3549980 3549981 mma_1088 mma_1089 cobS   TRUE 0.911 9.000 0.102 NA N NA
 3549983 3549984 mma_1091 mma_1092     FALSE 0.020 513.000 0.000 0.012 N NA
 3549984 3549985 mma_1092 mma_1093     TRUE 0.547 133.000 0.119 0.058 N NA
 3549985 3549986 mma_1093 mma_1094     TRUE 0.997 0.000 0.413 1.000 Y NA
 3549986 3549987 mma_1094 mma_1095   cobO TRUE 0.989 -3.000 0.026 1.000 Y NA
 3549987 3549988 mma_1095 mma_1096 cobO cobB TRUE 0.992 1.000 0.054 0.006 Y NA
 3549988 3549989 mma_1096 mma_1097 cobB cobU TRUE 0.985 0.000 0.024 1.000 Y NA
 3549989 3549990 mma_1097 mma_1098 cobU cobD2 TRUE 0.993 2.000 0.191 1.000 Y NA
 3549990 3549991 mma_1098 mma_1099 cobD2 cobC TRUE 0.996 -7.000 0.463 0.006 N NA
 3549991 3549992 mma_1099 mma_1100 cobC   TRUE 0.891 20.000 0.180 1.000 N NA
 3549992 3549993 mma_1100 mma_1101   cobQ TRUE 0.542 24.000 0.005 1.000 N NA
 3549993 3549994 mma_1101 mma_1102 cobQ parA2 FALSE 0.143 190.000 0.009 0.003 N NA
 3549994 3549995 mma_1102 mma_1103 parA2   TRUE 0.950 -3.000 0.026 NA   NA
 3549995 3549996 mma_1103 mma_1104     FALSE 0.423 46.000 0.000 NA   NA
 3549997 3549998 mma_1105 mma_1106 panC scpA FALSE 0.408 87.000 0.018 NA   NA
 3549998 3549999 mma_1106 mma_1107 scpA   TRUE 0.941 1.000 0.048 NA   NA
 3550001 3550002 mma_1109 mma_1110 sulP1   FALSE 0.197 129.000 0.000 1.000   NA
 3550005 3550006 mma_1113 mma_tRNA14 gltX   FALSE 0.351 66.000 0.000 NA   NA
 3550006 3550007 mma_tRNA14 mma_tRNA15     FALSE 0.364 60.000 0.000 NA   NA
 3550007 3550008 mma_tRNA15 mma_1114     FALSE 0.010 465.000 0.000 NA   NA
 3550008 3550009 mma_1114 mma_1115     TRUE 0.567 28.000 0.000 NA   NA
 3550009 3550010 mma_1115 mma_1116   yahF TRUE 0.994 -10.000 0.429 NA   NA
 3550010 3550011 mma_1116 mma_1117 yahF yahG TRUE 0.997 -3.000 0.714 NA   NA
 3550011 3550012 mma_1117 mma_1118 yahG   FALSE 0.087 225.000 0.057 NA   NA
 3550012 3550013 mma_1118 mma_1119   arcC1 TRUE 0.569 87.000 0.094 1.000 N NA
 3550013 3550014 mma_1119 mma_1120 arcC1   FALSE 0.253 91.000 0.000 1.000 N NA
 3550014 3550015 mma_1120 mma_1121     TRUE 0.701 127.000 0.000 0.072 Y NA
 3550015 3550016 mma_1121 mma_1122   tolC4 TRUE 0.780 26.000 0.083 1.000 N NA
 3550016 3550017 mma_1122 mma_1123 tolC4 emrA TRUE 0.985 -3.000 0.222 1.000 N NA
 3550017 3550018 mma_1123 mma_1124 emrA emrB TRUE 0.994 4.000 0.889 1.000   NA
 3550018 3550019 mma_1124 mma_1125 emrB   TRUE 0.462 59.000 0.022 NA   NA
 3550019 3550020 mma_1125 mma_1126   efp FALSE 0.420 127.000 0.074 NA   NA
 3550021 3550022 mma_1127 mma_1128     TRUE 0.979 16.000 0.637 NA   NA
 3550023 3550024 mma_1129 mma_1130   purU FALSE 0.068 165.000 0.000 NA N NA
 3550025 3550026 mma_1131 mma_1132   mog TRUE 0.530 36.000 0.008 NA   NA
 3550026 3550027 mma_1132 mma_1133 mog   TRUE 0.978 -16.000 0.117 NA   NA
 3550028 3550029 mma_1134 mma_1135 pmbA fcbTp2 FALSE 0.087 180.000 0.010 NA   NA
 3550030 3550031 mma_1136 mma_1137 fcbTl2 fcbTs2 TRUE 0.990 16.000 0.465 NA Y NA
 3550031 3550032 mma_1137 mma_1138 fcbTs2 argH FALSE 0.012 342.000 0.005 NA N NA
 3550033 3550034 mma_1139 mma_1140   algR TRUE 0.998 -3.000 0.775 0.030   NA
 3550036 3550037 mma_1142 mma_1143 hemC hemD TRUE 0.998 -7.000 0.205 0.002 Y NA
 3550037 3550038 mma_1143 mma_1144 hemD hemX TRUE 0.996 6.000 0.600 1.000 Y NA
 3550038 3550039 mma_1144 mma_1145 hemX hemY TRUE 0.979 61.000 0.765 1.000 Y NA
 3550039 3550040 mma_1145 mma_1146 hemY ppa FALSE 0.086 159.000 0.006 1.000 N NA
 3550041 3550042 mma_1147 mma_1148     FALSE 0.344 71.000 0.000 NA   NA
 3550042 3550043 mma_1148 mma_1149     FALSE 0.377 77.000 0.008 NA   NA
 3550044 3550045 mma_1150 mma_1151 nadE1 glnK2 TRUE 0.788 83.000 0.288 1.000 N NA
 3550046 3550047 mma_1152 mma_1153   trxB TRUE 0.519 91.000 0.053 NA   NA
 3550048 3550049 mma_1154 mma_1155 ftsK lolA TRUE 0.921 10.000 0.130 1.000 N NA
 3550049 3550050 mma_1155 mma_1156 lolA   FALSE 0.303 167.000 0.167 1.000 N NA
 3550050 3550051 mma_1156 mma_1157   serS FALSE 0.032 382.000 0.078 1.000 N NA
 3550054 3550055 mma_1159 mma_1160 fhuE1 fecR2 TRUE 0.502 143.000 0.000 NA Y NA
 3550055 3550056 mma_1160 mma_1161 fecR2 fecI2 TRUE 0.982 21.000 1.000 NA N NA
 3550057 3550058 mma_1162 mma_1163 mgtC2   FALSE 0.017 327.000 0.000 NA   NA
 3550059 3550060 mma_1164 mma_1165     FALSE 0.015 352.000 0.000 NA   NA
 3550060 3550061 mma_1165 mma_1166   gshA2 FALSE 0.022 288.000 0.000 NA   NA
 3550061 3550062 mma_1166 mma_1167 gshA2   FALSE 0.049 184.000 0.000 1.000 N NA
 3550063 3550064 mma_1168 mma_1169     FALSE 0.366 128.000 0.054 NA   NA
 3550064 3550065 mma_1169 mma_1170   tar9 FALSE 0.009 399.000 0.000 1.000 N NA
 3550066 3550067 mma_1171 mma_1172 fghA adhI TRUE 0.817 11.000 0.019 1.000   NA
 3550067 3550068 mma_1172 mma_1173 adhI minE FALSE 0.109 144.000 0.005 NA N NA
 3550068 3550069 mma_1173 mma_1174 minE minD TRUE 0.997 3.000 0.618 NA Y NA
 3550069 3550070 mma_1174 mma_1175 minD minC TRUE 0.983 29.000 0.466 1.000 Y NA
 3550071 3550072 mma_1176 mma_1177 rdgC   FALSE 0.410 101.000 0.025 NA   NA
 3550073 3550074 mma_1178 mma_1179   argA FALSE 0.434 131.000 0.123 NA N NA
 3550075 3550076 mma_1180 mma_1181 hrpA   TRUE 0.461 41.000 0.000 NA   NA
 3550076 3550077 mma_1181 mma_1182     TRUE 0.582 27.000 0.000 NA   NA
 3550077 3550078 mma_1182 mma_1183     TRUE 0.768 10.000 0.000 NA   NA
 3550078 3550079 mma_1183 mma_1184   dcd FALSE 0.337 83.000 0.000 NA   NA
 3550079 3550080 mma_1184 mma_1185 dcd   TRUE 0.633 21.000 0.000 NA   NA
 3550082 3550083 mma_1187 mma_1188     TRUE 0.999 -3.000 0.571 0.002 Y NA
 3550084 3550085 mma_1189 mma_1190     FALSE 0.376 55.000 0.000 NA   NA
 3550085 3550086 mma_1190 mma_1191   adi TRUE 0.903 27.000 0.012 NA Y NA
 3550086 3550087 mma_1191 mma_1192 adi folA FALSE 0.136 173.000 0.049 1.000 N NA
 3550087 3550088 mma_1192 mma_1193 folA thyA TRUE 0.904 13.000 0.134 1.000 N NA
 3550088 3550089 mma_1193 mma_1194 thyA   FALSE 0.221 105.000 0.003 1.000 N NA
 3550090 3550091 mma_1195 mma_1196     TRUE 0.559 87.000 0.069 NA   NA
 3550092 3550093 mma_1197 mma_1198 cti leuA2 FALSE 0.240 119.000 0.000 1.000   NA
 3550093 3550094 mma_1198 mma_1199 leuA2 selD FALSE 0.056 496.000 0.000 1.000 Y NA
 3550096 3550097 mma_1201 mma_1202     FALSE 0.047 209.000 0.000 NA   NA
 3550097 3550098 mma_1202 mma_1203   fabI FALSE 0.009 418.000 0.000 1.000 N NA
 3550099 3550100 mma_1204 mma_1205     TRUE 0.992 11.000 0.815 0.057   NA
 3550100 3550101 mma_1205 mma_1206     TRUE 0.982 -3.000 0.074 0.057   NA
 3550101 3550102 mma_1206 mma_1207     TRUE 0.983 -3.000 0.167 1.000   NA
 3550103 3550104 mma_1208 mma_1210 mltD gloB FALSE 0.200 234.000 0.233 1.000   NA
 3550105 3550106 mma_1209 mma_1211   rnhA TRUE 0.839 27.000 0.111 1.000   NA
 3550106 3550107 mma_1211 mma_1212 rnhA dnaQ TRUE 0.936 55.000 0.248 1.000 Y NA
 3550107 3550108 mma_1212 mma_tRNA17 dnaQ   TRUE 0.480 38.000 0.000 NA   NA
 3550108 3550109 mma_tRNA17 mma_1213   fecI3 FALSE 0.052 201.000 0.000 NA   NA
 3550109 3550110 mma_1213 mma_1214 fecI3 fecR3 TRUE 0.895 -7.000 0.000 NA N NA
 3550110 3550111 mma_1214 mma_1215 fecR3   TRUE 0.731 96.000 0.000 NA Y NA
 3550112 3550113 mma_1216 mma_1217 thiD1   FALSE 0.118 156.000 0.017 1.000 N NA
 3550114 3550115 mma_1218 mma_1219     TRUE 0.840 52.000 0.286 NA   NA
 3550115 3550116 mma_1219 mma_1220   cfa2 FALSE 0.012 427.000 0.000 NA   NA
 3550118 3550119 mma_1222 mma_1223 vanB3 vanA TRUE 0.587 57.000 0.000 0.002 N NA
 3550119 3550120 mma_1223 mma_1224 vanA   FALSE 0.410 48.000 0.000 NA   NA
 3550120 3550121 mma_1224 mma_1225   ompW1 FALSE 0.142 144.000 0.000 NA   NA
 3550121 3550122 mma_1225 mma_1226 ompW1   FALSE 0.077 179.000 0.000 1.000   NA
 3550123 3550124 mma_1227 mma_1228   acpD3 TRUE 0.955 -3.000 0.000 0.038 N NA
 3550124 3550125 mma_1228 mma_1229 acpD3   TRUE 0.927 11.000 0.128 1.000   NA
 3550125 3550126 mma_1229 mma_1230     TRUE 0.704 15.000 0.000 1.000   NA
 3550126 3550127 mma_1230 mma_1231     FALSE 0.354 65.000 0.000 NA   NA
 3550128 3550129 mma_1232 mma_1233   fecI4 TRUE 0.827 69.000 0.000 0.071 Y NA
 3550129 3550130 mma_1233 mma_1234 fecI4 fecR4 TRUE 0.814 3.000 0.000 NA N NA
 3550130 3550131 mma_1234 mma_1235 fecR4   TRUE 0.698 107.000 0.000 NA Y NA
 3550131 3550132 mma_1235 mma_1236   rluA FALSE 0.135 134.000 0.000 1.000 N NA
 3550133 3550134 mma_1237 mma_1238 ttuC   FALSE 0.248 96.000 0.000 1.000 N NA
 3550135 3550136 mma_1239 mma_1240 pbuX3 ssnA TRUE 0.959 37.000 0.250 1.000 Y NA
 3550136 3550137 mma_1240 mma_1241 ssnA pbuX4 TRUE 0.532 139.000 0.000 1.000 Y NA
 3550137 3550138 mma_1241 mma_1242 pbuX4 cumB1 TRUE 0.950 58.000 0.333 1.000 Y NA
 3550139 3550140 mma_1243 mma_1244     TRUE 0.587 125.000 0.176 NA   NA
 3550140 3550141 mma_1244 mma_1245     TRUE 0.815 122.000 0.059 0.071 Y NA
 3550143 3550144 mma_tRNA18 mma_1247   tyrB FALSE 0.296 104.000 0.000 NA   NA
 3550145 3550146 mma_1248 mma_1249 uvrB ung TRUE 0.748 81.000 0.002 1.000 Y NA
 3550148 3550149 mma_1251 mma_1252 iscR iscS TRUE 0.891 18.000 0.160 1.000 N NA
 3550149 3550150 mma_1252 mma_1253 iscS nifU TRUE 0.876 56.000 0.448 1.000 N NA
 3550150 3550151 mma_1253 mma_1254 nifU iscA TRUE 0.919 76.000 0.359 0.001   NA
 3550151 3550152 mma_1254 mma_1255 iscA hscB TRUE 0.624 165.000 0.500 1.000   NA
 3550152 3550153 mma_1255 mma_1256 hscB hscA TRUE 0.948 124.000 0.634 1.000 Y NA
 3550153 3550154 mma_1256 mma_1257 hscA fdx TRUE 0.912 103.000 0.794 1.000 N NA
 3550154 3550155 mma_1257 mma_1258 fdx   TRUE 0.983 12.000 0.625 1.000   NA
 3550156 3550157 mma_1259 mma_1260   lysS FALSE 0.065 185.000 0.003 1.000   NA
 3550157 3550158 mma_1260 mma_1261 lysS prfB TRUE 0.940 58.000 0.162 0.039 Y NA
 3550160 3550161 mma_1263 mma_1264 recJ   FALSE 0.441 45.000 0.005 NA   NA
 3550162 3550163 mma_1265 mma_1266 lolE lolD TRUE 0.997 -7.000 0.620 0.072 N NA
 3550163 3550164 mma_1266 mma_1267 lolD tatD1 TRUE 0.587 47.000 0.061 NA N NA
 3550164 3550165 mma_1267 mma_1268 tatD1 comEC TRUE 0.843 9.000 0.022 NA   NA
 3550165 3550166 mma_1268 mma_1269 comEC pyrG FALSE 0.044 217.000 0.000 1.000   NA
 3550166 3550167 mma_1269 mma_1270 pyrG eno TRUE 0.527 75.000 0.068 1.000 N NA
 3550167 3550168 mma_1270 mma_1271 eno ftsB TRUE 0.780 57.000 0.241 1.000 N NA
 3550169 3550170 mma_1272 mma_1273 hslo paaY TRUE 0.941 3.000 0.061 1.000   NA
 3550171 3550172 mma_1274 mma_1275     FALSE 0.079 186.000 0.011 NA   NA
 3550172 3550173 mma_1275 mma_1276     FALSE 0.069 183.000 0.000 NA   NA
 3550173 3550174 mma_1276 mma_1277     FALSE 0.439 95.000 0.029 1.000   NA
 3550174 3550175 mma_1277 mma_1278   htpX FALSE 0.314 103.000 0.005 1.000   NA
 3550175 3550176 mma_1278 mma_1279 htpX sua5 FALSE 0.292 58.000 0.004 NA N NA
 3550176 3550177 mma_1279 mma_1280 sua5   FALSE 0.393 141.000 0.104 NA   NA
 3550177 3550178 mma_1280 mma_1281     TRUE 0.807 7.000 0.000 1.000   NA
 3550178 3550179 mma_1281 mma_1282   dapA1 FALSE 0.332 87.000 0.000 1.000   NA
 3550179 3550180 mma_1282 mma_1283 dapA1   TRUE 0.745 98.000 0.009 NA Y NA
 3550180 3550181 mma_1283 mma_1284     TRUE 0.539 32.000 0.005 NA   NA
 3550182 3550183 mma_1285 mma_1286     FALSE 0.023 283.000 0.000 NA   NA
 3550185 3550186 mma_1288 mma_1289   mutS TRUE 0.862 9.000 0.033 NA   NA
 3550186 3550187 mma_1289 mma_1290 mutS   FALSE 0.086 154.000 0.000 1.000 N NA
 3550188 3550189 mma_1291 mma_1292 tctC6 tctB6 TRUE 0.737 12.000 0.000 NA   NA
 3550189 3550190 mma_1292 mma_1293 tctB6 tctA6 TRUE 0.723 13.000 0.000 NA   NA
 3550190 3550191 mma_1293 mma_1294 tctA6   FALSE 0.183 133.000 0.000 NA   NA
 3550191 3550192 mma_1294 mma_1295     FALSE 0.121 138.000 0.000 NA N NA
 3550193 3550194 mma_1296 mma_1297   rhlE FALSE 0.006 632.000 0.000 1.000 N NA
 3550194 3550195 mma_1297 mma_1298 rhlE suhB FALSE 0.022 246.000 0.000 1.000 N NA
 3550198 3550199 mma_1301 mma_1302 rpsF priB TRUE 0.813 28.000 0.122 NA N NA
 3550199 3550200 mma_1302 mma_1303 priB rpsR TRUE 0.885 16.000 0.128 NA N NA
 3550200 3550201 mma_1303 mma_1304 rpsR rplI TRUE 0.991 27.000 0.499 0.015 Y NA
 3550201 3550202 mma_1304 mma_1305 rplI dnaB TRUE 0.451 112.000 0.074 1.000 N NA
 3550202 3550203 mma_1305 mma_1306 dnaB   TRUE 0.534 96.000 0.085 NA N NA
 3550203 3550204 mma_1306 mma_1307   pitA TRUE 0.915 123.000 0.396 NA Y NA
 3550205 3550206 mma_1308 mma_1309   bcp FALSE 0.074 215.000 0.050 1.000 N NA
 3550206 3550207 mma_1309 mma_1310 bcp   FALSE 0.035 275.000 0.020 NA   NA
 3550208 3550209 mma_1311 mma_1312 aspB1 thrA TRUE 0.873 81.000 0.102 1.000 Y NA
 3550209 3550210 mma_1312 mma_1313 thrA thrC TRUE 0.641 159.000 0.125 1.000 Y NA
 3550210 3550211 mma_1313 mma_1314 thrC moeA1 FALSE 0.285 103.000 0.011 1.000 N NA
 3550211 3550212 mma_1314 mma_1315 moeA1 moaD TRUE 0.989 8.000 0.095 0.003 Y NA
 3550212 3550213 mma_1315 mma_1316 moaD moaE TRUE 0.994 19.000 0.501 0.003 Y NA
 3550213 3550214 mma_1316 mma_1317 moaE crcB TRUE 0.919 -3.000 0.014 NA N NA
 3550214 3550215 mma_1317 mma_1318 crcB clpB FALSE 0.065 168.000 0.004 NA N NA
 3550216 3550217 mma_1319 mma_1320 putA   FALSE 0.053 180.000 0.000 1.000 N NA
 3550217 3550218 mma_1320 mma_1321   metR FALSE 0.020 257.000 0.000 1.000 N NA
 3550219 3550220 mma_1322 mma_1323 metE2   FALSE 0.043 218.000 0.000 1.000   NA
 3550220 3550221 mma_1323 mma_1324     FALSE 0.014 379.000 0.000 NA   NA
 3550221 3550222 mma_1324 mma_1325   greB2 FALSE 0.244 110.000 0.010 NA N NA
 3550223 3550224 mma_1326 mma_1327 spoT rpoZ TRUE 0.959 42.000 0.291 1.000 Y NA
 3550224 3550225 mma_1327 mma_1328 rpoZ gmk TRUE 0.953 23.000 0.471 1.000 N NA
 3550225 3550226 mma_1328 mma_1329 gmk   TRUE 0.812 66.000 0.276 NA   NA
 3550227 3550228 mma_1330 mma_1331     TRUE 0.990 34.000 0.829 1.000 Y NA
 3550228 3550229 mma_1331 mma_1332   rph TRUE 0.862 7.000 0.040 1.000 N NA
 3550229 3550230 mma_1332 mma_1333 rph ham1 TRUE 0.646 125.000 0.262 1.000 N NA
 3550230 3550231 mma_1333 mma_1334 ham1 hemN1 TRUE 0.985 -3.000 0.218 1.000 N NA
 3550231 3550232 mma_1334 mma_tRNA19 hemN1   FALSE 0.118 153.000 0.000 NA   NA
 3550233 3550234 mma_1335 mma_1336 cheD1   FALSE 0.020 297.000 0.000 NA   NA
 3550234 3550235 mma_1336 mma_1337     FALSE 0.029 251.000 0.000 NA   NA
 3550236 3550237 mma_1338 mma_1339     TRUE 0.990 0.000 0.372 NA   NA
 3550237 3550238 mma_1339 mma_1340     FALSE 0.200 128.000 0.000 NA   NA
 3550240 3550241 mma_1342 mma_1343     TRUE 0.735 43.000 0.102 NA   NA
 3550241 3550242 mma_1343 mma_1344     FALSE 0.426 49.000 0.006 NA   NA
 3550242 3550243 mma_1344 mma_1345   ribH1 FALSE 0.015 354.000 0.000 NA   NA
 3550245 3550246 mma_1347 mma_1348 rluC1 gph2 TRUE 0.856 83.000 0.389 1.000   NA
 3550246 3550247 mma_1348 mma_1349 gph2   TRUE 0.959 7.000 0.199 1.000   NA
 3550247 3550248 mma_1349 mma_1350     TRUE 0.878 28.000 0.218 1.000 N NA
 3550249 3550250 mma_1351 mma_1352   maf2 TRUE 0.741 43.000 0.107 NA   NA
 3550251 3550252 mma_1353 mma_1354   rpmF TRUE 0.841 125.000 0.599 NA   NA
 3550252 3550253 mma_1354 mma_1355 rpmF plsX TRUE 0.617 148.000 0.418 1.000 N NA
 3550253 3550254 mma_1355 mma_1356 plsX fabH TRUE 0.993 15.000 0.380 0.004 Y NA
 3550254 3550255 mma_1356 mma_1357 fabH fabD TRUE 0.954 53.000 0.182 0.004 Y NA
 3550255 3550256 mma_1357 mma_1358 fabD fabG TRUE 0.998 0.000 0.432 0.004 Y NA
 3550256 3550257 mma_1358 mma_1359 fabG acpP TRUE 0.933 127.000 0.321 0.004 Y NA
 3550257 3550258 mma_1359 mma_1360 acpP fabF3 TRUE 0.976 30.000 0.346 1.000 Y NA
 3550258 3550259 mma_1360 mma_1361 fabF3   FALSE 0.391 53.000 0.005 NA   NA
 3550259 3550260 mma_1361 mma_1362   rpoE2 FALSE 0.373 83.000 0.009 NA   NA
 3550260 3550261 mma_1362 mma_1363 rpoE2 rseA TRUE 0.919 66.000 0.705 NA N NA
 3550261 3550262 mma_1363 mma_1364 rseA rseB TRUE 0.998 6.000 0.856 NA Y NA
 3550262 3550263 mma_1364 mma_1365 rseB mucD1 TRUE 0.925 16.000 0.218 1.000 N NA
 3550263 3550264 mma_1365 mma_1366 mucD1   TRUE 0.586 72.000 0.072 NA   NA
 3550264 3550265 mma_1366 mma_1367   lepA FALSE 0.068 197.000 0.010 NA   NA
 3550265 3550266 mma_1367 mma_1368 lepA lepB TRUE 0.982 -3.000 0.187 1.000 N NA
 3550266 3550267 mma_1368 mma_1369 lepB   TRUE 0.766 21.000 0.040 NA   NA
 3550267 3550268 mma_1369 mma_1370   rnc TRUE 0.552 34.000 0.010 NA   NA
 3550268 3550269 mma_1370 mma_1371 rnc era TRUE 0.981 -3.000 0.058 0.048   NA
 3550269 3550270 mma_1371 mma_1372 era recO TRUE 0.851 13.000 0.049 1.000   NA
 3550270 3550271 mma_1372 mma_1373 recO pdxJ TRUE 0.911 14.000 0.166 1.000 N NA
 3550271 3550272 mma_1373 mma_1374 pdxJ acpS TRUE 0.990 -3.000 0.326 1.000 N NA
 3550272 3550273 mma_1374 mma_1375 acpS nagZ TRUE 0.966 -3.000 0.081 1.000 N NA
 3550273 3550274 mma_1375 mma_1376 nagZ avrC FALSE 0.403 42.000 0.007 1.000 N NA
 3550274 3550275 mma_1376 mma_1377 avrC pgsA TRUE 0.775 56.000 0.227 1.000 N NA
 3550275 3550276 mma_1377 mma_tRNA20 pgsA   FALSE 0.361 62.000 0.000 NA   NA
 3550276 3550277 mma_tRNA20 mma_tRNA21     FALSE 0.311 99.000 0.000 NA   NA
 3550277 3550278 mma_tRNA21 mma_tRNA22     FALSE 0.242 118.000 0.000 NA   NA
 3550278 3550279 mma_tRNA22 mma_tRNA23     FALSE 0.361 62.000 0.000 NA   NA
 3550279 3550280 mma_tRNA23 mma_1378     TRUE 0.817 6.000 0.000 NA   NA
 3550280 3550281 mma_1378 mma_1379   maoC TRUE 0.751 16.000 0.015 NA   NA
 3550282 3550283 mma_1380 mma_1381 gst4 gpm4 FALSE 0.298 135.000 0.059 1.000 N NA
 3550283 3550284 mma_1381 mma_1382 gpm4 paaG2 TRUE 0.994 -3.000 0.531 1.000 N NA
 3550284 3550285 mma_1382 mma_1383 paaG2 aspB2 FALSE 0.312 52.000 0.000 1.000 N NA
 3550285 3550286 mma_1383 mma_1384 aspB2   TRUE 0.947 31.000 0.500 NA   NA
 3550287 3550288 mma_1385 mma_1386     FALSE 0.011 454.000 0.000 NA   NA
 3550288 3550289 mma_1386 mma_1387     TRUE 0.952 22.000 0.400 NA   NA
 3550289 3550290 mma_1387 mma_1388     TRUE 0.991 -3.000 0.333 NA   NA
 3550290 3550291 mma_1388 mma_1389     TRUE 0.958 -13.000 0.041 NA   NA
 3550291 3550292 mma_1389 mma_1390     TRUE 0.764 18.000 0.027 NA   NA
 3550292 3550293 mma_1390 mma_1391   ugp1 TRUE 0.715 54.000 0.125 1.000   NA
 3550295 3550296 mma_1393 mma_1394 rluD   TRUE 0.939 11.000 0.168 NA   NA
 3550298 3550299 mma_1396 mma_1397 phbC   FALSE 0.092 178.000 0.010 NA   NA
 3550299 3550300 mma_1397 mma_1398   yliG FALSE 0.425 102.000 0.030 NA   NA
 3550300 3550301 mma_1398 mma_1399 yliG   TRUE 0.922 -3.000 0.004 NA   NA
 3550301 3550302 mma_1399 mma_1400   metC TRUE 0.567 50.000 0.043 NA   NA
 3550302 3550303 mma_1400 mma_1401 metC oppA FALSE 0.084 350.000 0.000 1.000 Y NA
 3550303 3550304 mma_1401 mma_1402 oppA oppB TRUE 0.904 64.000 0.074 0.056 Y NA
 3550304 3550305 mma_1402 mma_1403 oppB oppC TRUE 0.999 3.000 0.871 0.056 Y NA
 3550305 3550306 mma_1403 mma_1404 oppC oppD TRUE 0.999 -3.000 0.742 1.000 Y NA
 3550306 3550307 mma_1404 mma_1405 oppD oppE TRUE 0.999 -3.000 0.677 0.001 Y NA
 3550308 3550309 mma_1406 mma_1407   serB FALSE 0.327 87.000 0.000 NA   NA
 3550309 3550310 mma_1407 mma_1408 serB mfd TRUE 0.483 37.000 0.014 1.000 N NA
 3550311 3550312 mma_1409 mma_1410 ispD ispF TRUE 0.998 -3.000 0.419 1.000 Y NA
 3550312 3550313 mma_1410 mma_1411 ispF   FALSE 0.028 253.000 0.000 NA   NA
 3550314 3550315 mma_1412 mma_1413 envZ risA TRUE 0.966 30.000 0.241 1.000 Y NA
 3550317 3550318 mma_1415 mma_1416 flgN flgM TRUE 0.994 7.000 0.211 0.002 Y NA
 3550318 3550319 mma_1416 mma_1417 flgM flgA TRUE 0.973 31.000 0.330 NA Y NA
 3550320 3550321 mma_1418 mma_1419 flgB flgC TRUE 0.997 3.000 0.261 0.004 Y NA
 3550321 3550322 mma_1419 mma_1420 flgC flgD TRUE 0.965 32.000 0.256 NA Y NA
 3550322 3550323 mma_1420 mma_1421 flgD flgE TRUE 0.965 31.000 0.244 NA Y NA
 3550323 3550324 mma_1421 mma_1422 flgE flgF TRUE 0.980 74.000 0.520 0.004 Y NA
 3550324 3550325 mma_1422 mma_1423 flgF flgG TRUE 0.974 77.000 0.381 0.001 Y NA
 3550325 3550326 mma_1423 mma_1424 flgG flgH TRUE 0.994 17.000 0.463 0.007 Y NA
 3550326 3550327 mma_1424 mma_1425 flgH flgI TRUE 0.973 24.000 0.110 0.008 Y NA
 3550327 3550328 mma_1425 mma_1426 flgI flgJ TRUE 0.985 8.000 0.054 0.008 Y NA
 3550328 3550329 mma_1426 mma_1427 flgJ flgK TRUE 0.979 112.000 0.705 0.003 Y NA
 3550329 3550330 mma_1427 mma_1428 flgK flgL TRUE 0.983 13.000 0.080 0.001 Y NA
 3550331 3550332 mma_1429 mma_1430 fliR fliQ TRUE 0.952 50.000 0.139 0.002 Y NA
 3550332 3550333 mma_1430 mma_1431 fliQ fliP TRUE 0.999 -19.000 0.827 0.011 Y NA
 3550333 3550334 mma_1431 mma_1432 fliP fliO TRUE 0.996 -10.000 0.203 1.000 Y NA
 3550334 3550335 mma_1432 mma_1433 fliO fliN TRUE 0.998 -3.000 0.443 1.000 Y NA
 3550335 3550336 mma_1433 mma_1434 fliN fliM TRUE 0.999 -7.000 0.741 0.001 Y NA
 3550336 3550337 mma_1434 mma_1435 fliM fliL TRUE 0.991 5.000 0.076 0.001 Y NA
 3550337 3550338 mma_1435 mma_1436 fliL fliK FALSE 0.104 377.000 0.031 1.000 Y NA
 3550338 3550339 mma_1436 mma_1437 fliK fliJ TRUE 0.988 24.000 0.317 0.007 Y NA
 3550339 3550340 mma_1437 mma_1438 fliJ fliI TRUE 0.949 36.000 0.073 0.008 Y NA
 3550340 3550341 mma_1438 mma_1439 fliI fliH TRUE 0.926 57.000 0.085 0.004 Y NA
 3550341 3550342 mma_1439 mma_1440 fliH fliG TRUE 0.998 -7.000 0.320 0.004 Y NA
 3550342 3550343 mma_1440 mma_1441 fliG fliF TRUE 0.998 -7.000 0.220 0.007 Y NA
 3550345 3550346 mma_1443 mma_1444     TRUE 0.593 54.000 0.057 NA   NA
 3550346 3550347 mma_1444 mma_1445     TRUE 0.990 -7.000 0.279 1.000   NA
 3550347 3550348 mma_1445 mma_1446   fliT TRUE 0.949 14.000 0.256 1.000   NA
 3550348 3550349 mma_1446 mma_1447 fliT fliS TRUE 0.982 4.000 0.338 1.000   NA
 3550349 3550350 mma_1447 mma_1448 fliS fliD TRUE 0.985 22.000 0.216 0.003 Y NA
 3550350 3550351 mma_1448 mma_1449 fliD flaG TRUE 0.791 97.000 0.035 NA Y NA
 3550351 3550352 mma_1449 mma_1450 flaG fliC TRUE 0.774 84.000 0.014 NA Y NA
 3550352 3550353 mma_1450 mma_1451 fliC   FALSE 0.007 472.000 0.000 1.000 N NA
 3550353 3550354 mma_1451 mma_1452   citB2 TRUE 0.475 185.000 0.095 1.000 Y NA
 3550354 3550355 mma_1452 mma_1453 citB2   TRUE 0.877 105.000 0.071 0.030 Y NA
 3550356 3550357 mma_tRNA24 mma_1454   gdhA2 FALSE 0.011 458.000 0.000 NA   NA
 3550357 3550358 mma_1454 mma_1455 gdhA2   FALSE 0.036 231.000 0.000 1.000   NA
 3550358 3550359 mma_1455 mma_1456   oxlT1 FALSE 0.030 249.000 0.000 1.000   NA
 3550361 3550362 mma_1458 mma_1459 rpsO pnp TRUE 0.667 196.000 0.335 1.000 Y NA
 3550362 3550363 mma_1459 mma_1460 pnp tpiA FALSE 0.097 145.000 0.002 1.000 N NA
 3550363 3550364 mma_1460 mma_1461 tpiA secG TRUE 0.777 45.000 0.184 1.000 N NA
 3550364 3550365 mma_1461 mma_tRNA25 secG   FALSE 0.332 85.000 0.000 NA   NA
 3550365 3550366 mma_tRNA25 mma_1462   nuoA FALSE 0.373 56.000 0.000 NA   NA
 3550366 3550367 mma_1462 mma_1463 nuoA nuoB TRUE 0.998 4.000 0.507 0.003 Y NA
 3550367 3550368 mma_1463 mma_1464 nuoB nuoC TRUE 0.993 14.000 0.328 0.003 Y NA
 3550368 3550369 mma_1464 mma_1465 nuoC nuoD TRUE 0.999 0.000 0.483 0.006 Y NA
 3550369 3550370 mma_1465 mma_1466 nuoD nuoE TRUE 0.987 28.000 0.355 0.006 Y NA
 3550370 3550371 mma_1466 mma_1467 nuoE nuoF TRUE 0.999 -3.000 0.343 0.006 Y NA
 3550371 3550372 mma_1467 mma_1468 nuoF nuoG TRUE 0.973 61.000 0.395 0.006 Y NA
 3550372 3550373 mma_1468 mma_1469 nuoG nuoH TRUE 0.999 0.000 0.515 0.006 Y NA
 3550373 3550374 mma_1469 mma_1470 nuoH nuoI TRUE 0.989 33.000 0.500 0.006 Y NA
 3550374 3550375 mma_1470 mma_1471 nuoI nuoJ TRUE 0.975 68.000 0.442 0.006 Y NA
 3550375 3550376 mma_1471 mma_1472 nuoJ nuoK TRUE 0.996 11.000 0.484 0.003 Y NA
 3550376 3550377 mma_1472 mma_1473 nuoK nuoL TRUE 0.989 29.000 0.451 0.006 Y NA
 3550377 3550378 mma_1473 mma_1474 nuoL nuoM TRUE 0.979 27.000 0.175 0.002 Y NA
 3550378 3550379 mma_1474 mma_1475 nuoM nuoN TRUE 0.978 46.000 0.340 0.002 Y NA
 3550379 3550380 mma_1475 mma_1476 nuoN   TRUE 0.843 39.000 0.202 NA   NA
 3550380 3550381 mma_1476 mma_1477     TRUE 0.558 70.000 0.058 NA   NA
 3550385 3550386 mma_1481 mma_1482 scoA scoB TRUE 0.996 23.000 0.789 0.001 Y NA
 3550388 3550389 mma_1484 mma_1485     TRUE 0.860 34.000 0.202 NA   NA
 3550389 3550390 mma_1485 mma_1486   relA TRUE 0.951 8.000 0.202 NA N NA
 3550390 3550391 mma_1486 mma_tRNA26 relA   FALSE 0.287 106.000 0.000 NA   NA
 3550391 3550392 mma_tRNA26 mma_1487   thrS FALSE 0.039 224.000 0.000 NA   NA
 3550392 3550393 mma_1487 mma_1488 thrS infC TRUE 0.863 117.000 0.186 1.000 Y NA
 3550393 3550394 mma_1488 mma_1489 infC rpmI TRUE 0.942 129.000 0.652 1.000 Y NA
 3550394 3550395 mma_1489 mma_1490 rpmI rplT TRUE 0.995 29.000 0.928 0.015 Y NA
 3550395 3550396 mma_1490 mma_1491 rplT pheS TRUE 0.829 130.000 0.202 1.000 Y NA
 3550396 3550397 mma_1491 mma_1492 pheS pheT TRUE 0.982 87.000 0.574 0.001 Y NA
 3550397 3550398 mma_1492 mma_1493 pheT ihfA TRUE 0.983 -64.000 0.208 1.000 N NA
 3550398 3550399 mma_1493 mma_1494 ihfA   TRUE 0.985 6.000 0.535 1.000 N NA
 3550400 3550401 mma_tRNA27 mma_1495   tar10 FALSE 0.343 79.000 0.000 NA   NA
 3550402 3550403 mma_1496 mma_1497 modA1   TRUE 0.501 74.000 0.041 NA   NA
 3550403 3550404 mma_1497 mma_1498     TRUE 0.480 38.000 0.000 NA   NA
 3550404 3550405 mma_1498 mma_1499     TRUE 0.931 -147.000 0.011 1.000   NA
 3550406 3550407 mma_1500 mma_1501   acnA FALSE 0.053 201.000 0.004 NA   NA
 3550407 3550408 mma_1501 mma_1502 acnA   FALSE 0.314 104.000 0.006 NA   NA
 3550408 3550409 mma_1502 mma_1503   citE TRUE 0.545 63.000 0.049 NA   NA
 3550409 3550410 mma_1503 mma_1504 citE mdh FALSE 0.314 71.000 0.009 1.000 N NA
 3550411 3550412 mma_1505 mma_1506 gntR1 sdhC FALSE 0.392 151.000 0.185 1.000 N NA
 3550412 3550413 mma_1506 mma_1507 sdhC sdhD TRUE 0.999 0.000 0.453 0.001 Y NA
 3550413 3550414 mma_1507 mma_1508 sdhD sdhA TRUE 0.999 2.000 0.705 0.001 Y NA
 3550414 3550415 mma_1508 mma_1509 sdhA sdhB TRUE 0.997 12.000 0.604 0.001 Y NA
 3550415 3550416 mma_1509 mma_1510 sdhB   TRUE 0.681 96.000 0.151 NA   NA
 3550416 3550417 mma_1510 mma_1511   gltA TRUE 0.691 81.000 0.136 NA   NA
 3550417 3550418 mma_1511 mma_1512 gltA sucA FALSE 0.224 227.000 0.020 1.000 Y NA
 3550418 3550419 mma_1512 mma_1513 sucA sucB TRUE 0.976 61.000 0.667 1.000 Y NA
 3550419 3550420 mma_1513 mma_1514 sucB pdhD1 TRUE 0.929 78.000 0.253 1.000 Y NA
 3550420 3550421 mma_1514 mma_1515 pdhD1   TRUE 0.594 27.000 0.005 NA   NA
 3550421 3550422 mma_1515 mma_1516     FALSE 0.249 138.000 0.029 NA   NA
 3550422 3550423 mma_1516 mma_1517     TRUE 0.668 51.000 0.088 NA   NA
 3550423 3550424 mma_1517 mma_1518   cspD1 FALSE 0.019 306.000 0.000 NA   NA
 3550426 3550427 mma_1520 mma_1521 yeaZ rimI1 TRUE 0.987 -3.000 0.209 1.000   NA
 3550427 3550428 mma_1521 mma_1522 rimI1 dpo TRUE 0.975 -3.000 0.096 1.000   NA
 3550428 3550429 mma_1522 mma_1523 dpo   TRUE 0.967 -22.000 0.064 1.000   NA
 3550431 3550432 mma_1525 mma_1526 alr radA FALSE 0.416 35.000 0.003 1.000 N NA
 3550433 3550434 mma_1527 mma_1528   crtb TRUE 0.973 0.000 0.130 1.000   NA
 3550434 3550435 mma_1528 mma_1529 crtb   TRUE 0.830 143.000 0.118 0.001 Y NA
 3550436 3550437 mma_tRNA28 mma_1530   tig TRUE 0.539 30.000 0.000 NA   NA
 3550437 3550438 mma_1530 mma_1531 tig clpP TRUE 0.975 31.000 0.351 1.000 Y NA
 3550438 3550439 mma_1531 mma_1532 clpP clpX TRUE 0.808 158.000 0.352 1.000 Y NA
 3550439 3550440 mma_1532 mma_1533 clpX lon FALSE 0.437 263.000 0.201 0.099 Y NA
 3550440 3550441 mma_1533 mma_1534 lon hupB FALSE 0.034 272.000 0.033 1.000 N NA
 3550441 3550442 mma_1534 mma_tRNA29 hupB   FALSE 0.329 86.000 0.000 NA   NA
 3550442 3550443 mma_tRNA29 mma_tRNA30     TRUE 0.487 37.000 0.000 NA   NA
 3550443 3550444 mma_tRNA30 mma_1535   ppiD FALSE 0.339 82.000 0.000 NA   NA
 3550445 3550446 mma_1536 mma_1538   tesA2 TRUE 0.886 4.000 0.019 1.000   NA
 3550448 3550449 mma_1539 mma_1540   dadA3 FALSE 0.276 77.000 0.004 1.000 N NA
 3550450 3550451 mma_1541 mma_1542     FALSE 0.330 145.000 0.087 NA   NA
 3550451 3550452 mma_1542 mma_1543   purL FALSE 0.052 201.000 0.000 NA   NA
 3550453 3550454 mma_1544 mma_1545   bolA FALSE 0.445 61.000 0.037 NA N NA
 3550454 3550455 mma_1545 mma_1546 bolA ispZ TRUE 0.976 -3.000 0.133 NA N NA
 3550455 3550456 mma_1546 mma_1547 ispZ msrB2 TRUE 0.917 11.000 0.136 1.000 N NA
 3550456 3550457 mma_1547 mma_1548 msrB2   TRUE 0.975 -3.000 0.095 NA   NA
 3550458 3550459 mma_1549 mma_1550 livK4 livH4 FALSE 0.413 201.000 0.097 NA Y NA
 3550459 3550460 mma_1550 mma_1551 livH4 livM4 TRUE 0.999 -3.000 0.549 0.055 Y NA
 3550460 3550461 mma_1551 mma_1552 livM4 livG4 TRUE 0.999 -3.000 0.647 1.000 Y NA
 3550461 3550462 mma_1552 mma_1553 livG4 livF4 TRUE 0.996 -3.000 0.086 0.020 Y NA
 3550462 3550463 mma_1553 mma_1554 livF4 katG FALSE 0.010 387.000 0.000 1.000 N NA
 3550463 3550464 mma_1554 mma_1555 katG   FALSE 0.232 120.000 0.000 NA   NA
 3550470 3550471 mma_1561 mma_1562     FALSE 0.351 66.000 0.000 NA   NA
 3550473 3550474 mma_1564 mma_1565 acrA3   TRUE 0.562 56.000 0.069 1.000 N NA
 3550474 3550475 mma_1565 mma_1566     TRUE 0.941 3.000 0.028 0.055 N NA
 3550475 3550476 mma_1566 mma_1567     FALSE 0.020 301.000 0.000 NA   NA
 3550477 3550478 mma_1568 mma_1569     FALSE 0.124 190.000 0.000 0.052   NA
 3550478 3550479 mma_1569 mma_1570     TRUE 0.933 17.000 0.222 NA   NA
 3550479 3550480 mma_1570 mma_1571     TRUE 0.758 92.000 0.222 NA   NA
 3550480 3550481 mma_1571 mma_1572     FALSE 0.009 543.000 0.000 NA   NA
 3550485 3550486 mma_1576 mma_1577     TRUE 0.557 29.000 0.000 1.000   NA
 3550486 3550487 mma_1577 mma_1578     FALSE 0.037 202.000 0.000 1.000 N NA
 3550489 3550490 mma_1580 mma_1581   add FALSE 0.383 54.000 0.000 1.000   NA
 3550490 3550491 mma_1581 mma_1582 add aadA4 FALSE 0.327 90.000 0.000 1.000   NA
 3550492 3550493 mma_1583 mma_1584     FALSE 0.244 190.000 0.200 1.000 N NA
 3550493 3550494 mma_1584 mma_1585   eriC TRUE 0.901 3.000 0.038 1.000 N NA
 3550495 3550496 mma_1586 mma_1587     TRUE 0.499 36.000 0.000 1.000   NA
 3550499 3550500 mma_1589 mma_1591     FALSE 0.253 87.000 0.000 NA N NA
 3550501 3550502 mma_1592 mma_1593     FALSE 0.073 180.000 0.000 NA   NA
 3550502 3550503 mma_1593 mma_1594     FALSE 0.010 482.000 0.000 NA   NA
 3550503 3550504 mma_1594 mma_1595     FALSE 0.334 84.000 0.000 NA   NA
 3550504 3550505 mma_1595 mma_1596     TRUE 0.792 8.000 0.000 NA   NA
 3550505 3550506 mma_1596 mma_1597     TRUE 0.946 39.000 0.600 NA   NA
 3550506 3550507 mma_1597 mma_1598     FALSE 0.009 566.000 0.000 NA   NA
 3550507 3550508 mma_1598 mma_1599     FALSE 0.013 316.000 0.000 NA N NA
 3550510 3550511 mma_1601 mma_1602 gst5   TRUE 0.978 2.000 0.250 NA N NA
 3550512 3550513 mma_1603 mma_1604   gltS FALSE 0.138 133.000 0.000 1.000 N NA
 3550514 3550515 mma_1605 mma_1606 cheY1   TRUE 0.946 19.000 0.312 NA   NA
 3550515 3550516 mma_1606 mma_1607     TRUE 0.989 7.000 0.667 NA   NA
 3550516 3550517 mma_1607 mma_1608     TRUE 0.844 53.000 0.294 1.000   NA
 3550518 3550519 mma_1609 mma_1610     TRUE 0.896 22.000 0.204 1.000 N NA
 3550519 3550520 mma_1610 mma_1611   xenB TRUE 0.746 29.000 0.080 1.000 N NA
 3550521 3550522 mma_1612 mma_1613     TRUE 0.772 10.000 0.000 1.000   NA
 3550522 3550523 mma_1613 mma_1614   citB3 TRUE 0.919 105.000 0.286 1.000 Y NA
 3550524 3550525 mma_1615 mma_1616     TRUE 0.671 42.000 0.000 0.014   NA
 3550525 3550526 mma_1616 mma_1617   fhaC3 TRUE 0.530 31.000 0.000 NA   NA
 3550526 3550527 mma_1617 mma_1618 fhaC3   FALSE 0.324 89.000 0.000 NA   NA
 3550528 3550529 mma_1619 mma_1620     FALSE 0.435 104.000 0.038 NA   NA
 3550529 3550530 mma_1620 mma_1621     TRUE 0.995 -3.000 0.411 0.098 N NA
 3550530 3550531 mma_1621 mma_1622     TRUE 0.517 25.000 0.000 1.000 N NA
 3550533 3550534 mma_1624 mma_1625 ansA1   FALSE 0.047 210.000 0.000 NA   NA
 3550534 3550535 mma_1625 mma_1626     FALSE 0.025 271.000 0.000 NA   NA
 3550536 3550537 mma_1627 mma_1628 hemN2   TRUE 0.924 5.000 0.061 1.000   NA
 3550537 3550538 mma_1628 mma_1629     TRUE 0.967 0.000 0.038 0.051   NA
 3550538 3550539 mma_1629 mma_1630   fixS TRUE 0.996 9.000 0.713 NA Y NA
 3550539 3550540 mma_1630 mma_1631 fixS ccoN FALSE 0.123 189.000 0.070 NA N NA
 3550540 3550541 mma_1631 mma_1632 ccoN ccoO TRUE 0.866 25.000 0.050 0.002 N NA
 3550541 3550542 mma_1632 mma_1633 ccoO ccoQ TRUE 0.975 3.000 0.074 0.002   NA
 3550542 3550543 mma_1633 mma_1634 ccoQ ccoP TRUE 0.997 -7.000 0.462 0.002   NA
 3550543 3550544 mma_1634 mma_1635 ccoP   TRUE 0.967 19.000 0.051 0.023 Y NA
 3550544 3550545 mma_1635 mma_1636     TRUE 0.716 21.000 0.020 NA   NA
 3550545 3550546 mma_1636 mma_1637     FALSE 0.014 384.000 0.000 NA   NA
 3550546 3550547 mma_1637 mma_1638     FALSE 0.013 400.000 0.000 1.000   NA
 3550548 3550549 mma_1639 mma_1640   fdxA2 FALSE 0.272 75.000 0.000 1.000 N NA
 3550550 3550551 mma_1641 mma_1642   rimI2 TRUE 0.494 36.000 0.000 NA   NA
 3550551 3550552 mma_1642 mma_1643 rimI2 brfB FALSE 0.026 270.000 0.000 1.000   NA
 3550552 3550553 mma_1643 mma_1644 brfB   FALSE 0.350 69.000 0.000 1.000   NA
 3550553 3550554 mma_1644 mma_1645     TRUE 0.983 3.000 0.316 NA   NA
 3550555 3550556 mma_1646 mma_1647   xenA FALSE 0.247 92.000 0.000 NA N NA
 3550559 3550560 mma_1650 mma_1651     TRUE 0.914 11.000 0.103 NA   NA
 3550561 3550562 mma_1652 mma_1653     FALSE 0.009 576.000 0.000 NA   NA
 3550562 3550563 mma_1653 mma_1654   cinA2 FALSE 0.383 53.000 0.000 NA   NA
 3550563 3550564 mma_1654 mma_1655 cinA2 nadE2 FALSE 0.322 111.000 0.013 NA   NA
 3550564 3550565 mma_1655 mma_1656 nadE2   FALSE 0.195 115.000 0.000 1.000 N NA
 3550568 3550569 mma_1659 mma_1660     TRUE 0.996 9.000 0.706 1.000 Y NA
 3550569 3550570 mma_1660 mma_1661     FALSE 0.210 127.000 0.000 1.000   NA
 3550572 3550573 mma_1663 mma_1664 osmB mrcA FALSE 0.009 560.000 0.000 NA   NA
 3550573 3550574 mma_1664 mma_1665 mrcA   FALSE 0.058 175.000 0.000 1.000 N NA
 3550575 3550576 mma_1666 mma_1667     FALSE 0.373 56.000 0.000 NA   NA
 3550576 3550577 mma_1667 mma_1668     FALSE 0.151 142.000 0.000 NA   NA
 3550580 3550581 mma_1671 mma_1672     FALSE 0.300 104.000 0.000 1.000   NA
 3550581 3550582 mma_1672 mma_1673     FALSE 0.321 96.000 0.000 1.000   NA
 3550582 3550583 mma_1673 mma_1674     TRUE 0.544 62.000 0.000 0.060   NA
 3550583 3550584 mma_1674 mma_1675     TRUE 0.967 42.000 0.667 0.037   NA
 3550584 3550585 mma_1675 mma_1676   gst6 TRUE 0.923 55.000 0.667 1.000 N NA
 3550585 3550586 mma_1676 mma_1677 gst6   FALSE 0.065 187.000 0.000 1.000   NA
 3550586 3550587 mma_1677 mma_1678     TRUE 0.996 -7.000 0.590 1.000   NA
 3550587 3550588 mma_1678 mma_1679     TRUE 0.993 0.000 0.359 0.055   NA
 3550589 3550590 mma_1680 mma_1681 def2 tolC5 FALSE 0.321 50.000 0.000 1.000 N NA
 3550590 3550591 mma_1681 mma_1682 tolC5 yegO TRUE 0.915 18.000 0.214 NA N NA
 3550591 3550592 mma_1682 mma_1683 yegO yegN TRUE 0.995 -3.000 0.143 NA Y NA
 3550592 3550593 mma_1683 mma_1684 yegN yegM TRUE 0.780 38.000 0.150 NA N NA
 3550595 3550596 mma_1686 mma_1687     FALSE 0.133 147.000 0.000 1.000   NA
 3550596 3550597 mma_1687 mma_1688     TRUE 0.471 47.000 0.011 NA   NA
 3550598 3550599 mma_1689 mma_1690   sodC FALSE 0.059 174.000 0.000 1.000 N NA
 3550599 3550600 mma_1690 mma_1691 sodC   FALSE 0.351 66.000 0.000 NA   NA
 3550600 3550601 mma_1691 mma_1692     FALSE 0.343 79.000 0.000 NA   NA
 3550603 3550604 mma_1694 mma_1695   mqo TRUE 0.505 118.000 0.000 0.001   NA
 3550604 3550605 mma_1695 mma_1696 mqo   TRUE 0.461 41.000 0.000 NA   NA
 3550606 3550607 mma_1697 mma_1698     FALSE 0.443 43.000 0.000 NA   NA
 3550607 3550608 mma_1698 mma_1699     TRUE 0.684 17.000 0.000 1.000   NA
 3550608 3550609 mma_1699 mma_1700     TRUE 0.690 16.000 0.000 NA   NA
 3550609 3550610 mma_1700 mma_1701     FALSE 0.033 239.000 0.000 NA   NA
 3550611 3550612 mma_1702 mma_1703     FALSE 0.091 396.000 0.254 NA   NA
 3550614 3550615 mma_1705 mma_1706 fhaC4   TRUE 0.624 22.000 0.000 NA   NA
 3550615 3550616 mma_1706 mma_1707     FALSE 0.019 311.000 0.000 1.000   NA
 3550616 3550617 mma_1707 mma_1708     TRUE 0.972 -132.000 0.000 0.001   NA
 3550617 3550618 mma_1708 mma_1709   tctC7 FALSE 0.069 184.000 0.000 1.000   NA
 3550618 3550619 mma_1709 mma_1710 tctC7   FALSE 0.010 468.000 0.000 NA   NA
 3550619 3550620 mma_1710 mma_1711     TRUE 0.991 -3.000 0.308 NA   NA
 3550620 3550621 mma_1711 mma_1712     TRUE 0.987 11.000 0.706 NA   NA
 3550621 3550622 mma_1712 mma_1713     FALSE 0.329 227.000 0.412 NA   NA
 3550622 3550623 mma_1713 mma_1714     FALSE 0.236 119.000 0.000 NA   NA
 3550625 3550626 mma_1716 mma_1717   silC2 FALSE 0.344 72.000 0.000 NA   NA
 3550626 3550627 mma_1717 mma_1718 silC2 silB TRUE 0.986 -3.000 0.000 1.000 Y NA
 3550627 3550628 mma_1718 mma_1719 silB silA TRUE 0.894 -3.000 0.000 1.000 N NA
 3550628 3550629 mma_1719 mma_1720 silA   TRUE 0.986 18.000 1.000 NA   NA
 3550630 3550631 mma_1721 mma_1722 copS2 copR2 TRUE 0.998 0.000 0.286 0.003 Y NA
 3550632 3550633 mma_1723 mma_1724 copA2 copB2 TRUE 0.984 30.000 1.000 0.005 N NA
 3550633 3550634 mma_1724 mma_1725 copB2 copC2 TRUE 0.983 38.000 1.000 0.005   NA
 3550634 3550635 mma_1725 mma_1726 copC2 copD2 TRUE 0.979 8.000 0.400 1.000   NA
 3550635 3550636 mma_1726 mma_1727 copD2   FALSE 0.134 146.000 0.000 NA   NA
 3550636 3550637 mma_1727 mma_1728   gtrB1 FALSE 0.044 214.000 0.000 NA   NA
 3550637 3550638 mma_1728 mma_1729 gtrB1   TRUE 0.922 -3.000 0.000 NA   NA
 3550638 3550639 mma_1729 mma_1730     FALSE 0.322 91.000 0.000 NA   NA
 3550639 3550640 mma_1730 mma_1731   czcB3 TRUE 0.996 -3.000 0.200 1.000 Y NA
 3550640 3550641 mma_1731 mma_1732 czcB3 czcA3 TRUE 0.969 3.000 0.200 1.000 N NA
 3550641 3550642 mma_1732 mma_1733 czcA3 cnrT FALSE 0.190 137.000 0.024 NA N NA
 3550643 3550644 mma_1734 mma_1735     TRUE 0.616 23.000 0.000 NA   NA
 3550647 3550648 mma_1738 mma_1739     TRUE 0.993 -34.000 0.410 1.000   NA
 3550648 3550649 mma_1739 mma_1740     FALSE 0.121 152.000 0.000 NA   NA
 3550649 3550650 mma_1740 mma_1741     TRUE 0.922 -3.000 0.000 NA   NA
 3550652 3550653 mma_1743 mma_1744     FALSE 0.323 90.000 0.000 NA   NA
 3550654 3550655 mma_1745 mma_1746     FALSE 0.020 300.000 0.000 NA   NA
 3550655 3550656 mma_1746 mma_1747     FALSE 0.258 113.000 0.000 NA   NA
 3550656 3550657 mma_1747 mma_1748   merD TRUE 0.995 -3.000 0.500 NA   NA
 3550657 3550658 mma_1748 mma_1749 merD merA TRUE 0.945 18.000 0.333 1.000 N NA
 3550658 3550659 mma_1749 mma_1750 merA merC TRUE 0.941 39.000 0.556 NA   NA
 3550659 3550660 mma_1750 mma_1751 merC merP TRUE 0.959 28.000 0.556 NA   NA
 3550660 3550661 mma_1751 mma_1752 merP merT TRUE 0.978 14.000 0.300 0.001   NA
 3550661 3550662 mma_1752 mma_1753 merT merB FALSE 0.096 165.000 0.000 1.000   NA
 3550664 3550665 mma_1755 mma_1756     FALSE 0.017 329.000 0.000 NA   NA
 3550665 3550666 mma_1756 mma_1757     TRUE 0.916 -130.000 0.000 NA   NA
 3550667 3550668 mma_1758 mma_1759     FALSE 0.124 150.000 0.000 NA   NA
 3550669 3550670 mma_1760 mma_1761   czcR1 TRUE 0.922 -3.000 0.000 NA   NA
 3550672 3550673 mma_1763 mma_1764 flgB2   TRUE 0.741 12.000 0.000 1.000   NA
 3550673 3550674 mma_1764 mma_1765   gtrB2 FALSE 0.217 124.000 0.000 NA   NA
 3550674 3550675 mma_1765 mma_1766 gtrB2   FALSE 0.047 209.000 0.000 NA   NA
 3550675 3550676 mma_1766 mma_1767   czcD1 FALSE 0.019 308.000 0.000 NA   NA
 3550676 3550677 mma_1767 mma_1768 czcD1   FALSE 0.012 423.000 0.000 NA   NA
 3550677 3550678 mma_1768 mma_1769   czcA4 TRUE 0.793 96.000 0.286 NA   NA
 3550678 3550679 mma_1769 mma_1770 czcA4 glnB2 TRUE 0.963 15.000 0.429 1.000 N NA
 3550679 3550680 mma_1770 mma_1771 glnB2 czcB4 TRUE 0.977 11.000 0.500 1.000 N NA
 3550680 3550681 mma_1771 mma_1772 czcB4 czcC1 TRUE 0.997 9.000 1.000 1.000 Y NA
 3550681 3550682 mma_1772 mma_1773 czcC1 czcI TRUE 0.943 94.000 1.000 NA   NA
 3550682 3550683 mma_1773 mma_1774 czcI   FALSE 0.079 175.000 0.000 NA   NA
 3550683 3550684 mma_1774 mma_1775     TRUE 0.922 -3.000 0.000 NA   NA
 3550684 3550685 mma_1775 mma_1776     TRUE 0.782 9.000 0.000 NA   NA
 3550685 3550686 mma_1776 mma_1777     TRUE 0.993 -13.000 0.429 NA   NA
 3550686 3550687 mma_1777 mma_1778     FALSE 0.009 614.000 0.000 NA   NA
 3550687 3550688 mma_1778 mma_1779     FALSE 0.322 91.000 0.000 NA   NA
 3550688 3550689 mma_1779 mma_1780     TRUE 0.897 0.000 0.000 NA   NA
 3550689 3550690 mma_1780 mma_1781     FALSE 0.009 556.000 0.000 NA   NA
 3550690 3550691 mma_1781 mma_1782     TRUE 0.984 3.000 0.333 NA   NA
 3550691 3550692 mma_1782 mma_1783     TRUE 0.987 10.000 0.667 NA   NA
 3550692 3550693 mma_1783 mma_1784     FALSE 0.008 705.000 0.000 NA   NA
 3550694 3550695 mma_1785 mma_1786     FALSE 0.051 202.000 0.000 NA   NA
 3550695 3550696 mma_1786 mma_1787     FALSE 0.345 81.000 0.000 1.000   NA
 3550697 3550698 mma_1788 mma_1789     FALSE 0.189 130.000 0.000 NA   NA
 3550698 3550699 mma_1789 mma_1790     FALSE 0.225 122.000 0.000 NA   NA
 3550699 3550700 mma_1790 mma_1791     FALSE 0.045 213.000 0.000 NA   NA
 3550700 3550701 mma_1791 mma_1792   czcA5 FALSE 0.146 143.000 0.000 NA   NA
 3550701 3550702 mma_1792 mma_1793 czcA5 czcB5 TRUE 0.963 19.000 0.500 1.000 N NA
 3550702 3550703 mma_1793 mma_1794 czcB5 czcC2 TRUE 0.990 40.000 1.000 1.000 Y NA
 3550703 3550704 mma_1794 mma_1795 czcC2   FALSE 0.344 75.000 0.000 NA   NA
 3550704 3550705 mma_1795 mma_1796   zntA1 FALSE 0.410 48.000 0.000 NA   NA
 3550707 3550708 mma_1798 mma_1799     TRUE 0.452 42.000 0.000 NA   NA
 3550708 3550709 mma_1799 mma_1800   ptsN1 FALSE 0.100 162.000 0.000 NA   NA
 3550710 3550711 mma_1801 mma_1802   dapA2 TRUE 0.508 34.000 0.000 NA   NA
 3550711 3550712 mma_1802 mma_1803 dapA2   TRUE 0.737 12.000 0.000 NA   NA
 3550712 3550713 mma_1803 mma_1804     FALSE 0.032 240.000 0.000 NA   NA
 3550713 3550714 mma_1804 mma_1805     TRUE 0.516 33.000 0.000 NA   NA
 3550714 3550715 mma_1805 mma_1806   livK5 FALSE 0.014 381.000 0.000 NA   NA
 3550715 3550716 mma_1806 mma_1807 livK5 livH5 TRUE 0.856 174.000 0.654 NA Y NA
 3550716 3550717 mma_1807 mma_1808 livH5 livM5 TRUE 0.999 -3.000 0.758 0.054 Y NA
 3550717 3550718 mma_1808 mma_1809 livM5 livG5 TRUE 0.997 -3.000 0.823 1.000   NA
 3550718 3550719 mma_1809 mma_1810 livG5 livF5 TRUE 0.995 5.000 0.731 0.020   NA
 3550719 3550720 mma_1810 mma_1811 livF5 ureD TRUE 0.792 49.000 0.221 1.000 N NA
 3550720 3550721 mma_1811 mma_1812 ureD ureA TRUE 0.965 44.000 0.664 0.002 N NA
 3550721 3550722 mma_1812 mma_1813 ureA ureB TRUE 0.994 27.000 0.595 0.001 Y NA
 3550722 3550723 mma_1813 mma_1814 ureB ureC TRUE 0.999 0.000 0.486 0.001 Y NA
 3550723 3550724 mma_1814 mma_1815 ureC ureE TRUE 0.984 8.000 0.315 0.001 N NA
 3550724 3550725 mma_1815 mma_1816 ureE ureF TRUE 0.996 13.000 0.560 0.002 Y NA
 3550725 3550726 mma_1816 mma_1817 ureF ureG TRUE 0.989 38.000 0.550 0.002 Y NA
 3550726 3550727 mma_1817 mma_1818 ureG ureJ TRUE 0.875 50.000 0.068 NA Y NA
 3550728 3550729 mma_1819 mma_1820 kdpE kdpD TRUE 0.995 -3.000 0.154 1.000 Y NA
 3550729 3550730 mma_1820 mma_1821 kdpD kdpC TRUE 0.585 85.000 0.100 1.000 N NA
 3550730 3550731 mma_1821 mma_1822 kdpC kdpB TRUE 0.998 13.000 0.877 0.001 Y NA
 3550731 3550732 mma_1822 mma_1823 kdpB kdpA TRUE 0.933 62.000 0.091 0.001 Y NA
 3550732 3550733 mma_1823 mma_1824 kdpA   FALSE 0.073 397.000 0.000 1.000 Y NA
 3550733 3550734 mma_1824 mma_1825   frmR FALSE 0.236 119.000 0.000 NA   NA
 3550736 3550737 mma_1827 mma_1828 dps   FALSE 0.054 199.000 0.000 NA   NA
 3550737 3550738 mma_1828 mma_1829     FALSE 0.344 72.000 0.000 NA   NA
 3550738 3550739 mma_1829 mma_1830     FALSE 0.272 73.000 0.000 1.000 N NA
 3550739 3550740 mma_1830 mma_1831   mdoD FALSE 0.262 85.000 0.000 1.000 N NA
 3550741 3550742 mma_1832 mma_1833   pbpG2 FALSE 0.036 229.000 0.000 NA   NA
 3550743 3550744 mma_1834 mma_1835   feoB TRUE 0.951 -3.000 0.028 NA   NA
 3550744 3550745 mma_1835 mma_1836 feoB feoA TRUE 0.992 13.000 0.500 1.000 Y NA
 3550748 3550749 mma_1839 mma_1840     TRUE 0.461 41.000 0.000 NA   NA
 3550749 3550750 mma_1840 mma_1841   phnB TRUE 0.922 -3.000 0.000 NA   NA
 3550750 3550751 mma_1841 mma_1842 phnB   TRUE 0.539 30.000 0.000 NA   NA
 3550751 3550752 mma_1842 mma_1843     FALSE 0.365 59.000 0.000 NA   NA
 3550754 3550755 mma_1845 mma_1846   mxcB TRUE 0.980 0.000 0.223 NA N NA
 3550755 3550756 mma_1846 mma_1847 mxcB   FALSE 0.097 164.000 0.000 NA   NA
 3550756 3550757 mma_1847 mma_1848     FALSE 0.211 126.000 0.000 NA   NA
 3550758 3550759 mma_1849 mma_1850     FALSE 0.347 68.000 0.000 NA   NA
 3550759 3550760 mma_1850 mma_1851     FALSE 0.072 181.000 0.000 1.000   NA
 3550762 3550763 mma_1853 mma_1854     FALSE 0.074 162.000 0.000 1.000 N NA
 3550763 3550764 mma_1854 mma_1855   lysR1 FALSE 0.011 342.000 0.000 1.000 N NA
 3550766 3550767 mma_1857 mma_1858     TRUE 0.556 126.000 0.154 NA   NA
 3550770 3550771 mma_1861 mma_1862     TRUE 0.700 15.000 0.000 NA   NA
 3550771 3550772 mma_1862 mma_1863     FALSE 0.440 67.000 0.020 NA   NA
 3550772 3550773 mma_1863 mma_1864     FALSE 0.107 194.000 0.043 NA   NA
 3550775 3550776 mma_1866 mma_1867     TRUE 0.545 43.000 0.040 1.000 N NA
 3550777 3550778 mma_1868 mma_1869     FALSE 0.330 88.000 0.000 1.000   NA
 3550782 3550783 mma_1873 mma_1874 lipG   TRUE 0.933 8.000 0.108 NA   NA
 3550783 3550784 mma_1874 mma_1875     TRUE 0.953 7.000 0.162 NA   NA
 3550784 3550785 mma_1875 mma_1876     FALSE 0.242 118.000 0.000 NA   NA
 3550785 3550786 mma_1876 mma_1877     FALSE 0.423 46.000 0.000 NA   NA
 3550786 3550787 mma_1877 mma_1878     TRUE 0.994 -3.000 0.446 1.000   NA
 3550787 3550788 mma_1878 mma_1879     FALSE 0.007 930.000 0.000 NA   NA
 3550790 3550791 mma_1881 mma_1882     FALSE 0.337 83.000 0.000 NA   NA
 3550792 3550793 mma_1883 mma_1884 aceE2 acpD4 TRUE 0.509 26.000 0.000 1.000 N NA
 3550794 3550795 mma_1885 mma_1886   smpB1 FALSE 0.040 223.000 0.000 NA   NA
 3550798 3550799 mma_1889 mma_1890 str   FALSE 0.009 427.000 0.000 1.000 N NA
 3550800 3550801 mma_1891 mma_1892     TRUE 0.979 -25.000 0.071 0.021 N NA
 3550802 3550803 mma_1893 mma_1894 fmdA   TRUE 0.974 13.000 0.478 NA   NA
 3550803 3550804 mma_1894 mma_1895   ureI FALSE 0.161 167.000 0.040 NA   NA
 3550804 3550805 mma_1895 mma_1896 ureI   FALSE 0.203 128.000 0.000 1.000   NA
 3550805 3550806 mma_1896 mma_1897     TRUE 0.994 0.000 0.600 NA   NA
 3550807 3550808 mma_1898 mma_1899 marC   TRUE 0.850 22.000 0.100 NA   NA
 3550808 3550809 mma_1899 mma_1900   psd FALSE 0.015 352.000 0.000 NA   NA
 3550809 3550810 mma_1900 mma_1901 psd   FALSE 0.007 522.000 0.000 NA N NA
 3550810 3550811 mma_1901 mma_1902     FALSE 0.186 137.000 0.007 NA   NA
 3550812 3550813 mma_1903 mma_1904   cbpA1 TRUE 0.456 56.000 0.018 NA   NA
 3550813 3550814 mma_1904 mma_1905 cbpA1   TRUE 0.968 13.000 0.388 NA   NA
 3550814 3550815 mma_1905 mma_1906     FALSE 0.339 82.000 0.000 NA   NA
 3550815 3550816 mma_1906 mma_1907     TRUE 0.943 -3.000 0.037 NA N NA
 3550820 3550821 mma_1911 mma_1912     TRUE 0.994 -64.000 0.500 NA   NA
 3550821 3550822 mma_1912 mma_1913   dnaE2 TRUE 0.992 19.000 0.600 1.000 Y NA
 3550825 3550826 mma_1916 mma_1917   rpoE3 TRUE 0.995 -3.000 0.511 NA   NA
 3550826 3550827 mma_1917 mma_1918 rpoE3   TRUE 0.981 0.000 0.200 NA   NA
 3550827 3550828 mma_1918 mma_1919     FALSE 0.183 133.000 0.000 NA   NA
 3550830 3550831 mma_1921 mma_1922 rpoE4 ugp2 FALSE 0.090 169.000 0.000 1.000   NA
 3550831 3550832 mma_1922 mma_1923 ugp2 fecR5 FALSE 0.093 166.000 0.000 NA   NA
 3550832 3550833 mma_1923 mma_1924 fecR5 fecI5 TRUE 0.968 24.000 0.667 NA N NA
 3550833 3550834 mma_1924 mma_1925 fecI5   TRUE 0.772 10.000 0.000 1.000   NA
 3550834 3550835 mma_1925 mma_1926     FALSE 0.240 119.000 0.000 1.000   NA
 3550835 3550836 mma_1926 mma_1927   bfrF1 FALSE 0.036 232.000 0.000 1.000   NA
 3550836 3550837 mma_1927 mma_1928 bfrF1   FALSE 0.025 235.000 0.000 1.000 N NA
 3550837 3550838 mma_1928 mma_1929     FALSE 0.083 156.000 0.000 1.000 N NA
 3550840 3550841 mma_1931 mma_1932     TRUE 0.971 12.000 0.400 NA   NA
 3550841 3550842 mma_1932 mma_1933     TRUE 0.996 -10.000 0.600 NA   NA
 3550842 3550843 mma_1933 mma_1934     TRUE 0.922 -3.000 0.000 NA   NA
 3550843 3550844 mma_1934 mma_1935     TRUE 0.894 -3.000 0.000 1.000 N NA
 3550846 3550847 mma_1937 mma_1938   gloA3 FALSE 0.200 128.000 0.000 NA   NA
 3550847 3550848 mma_1938 mma_1939 gloA3   TRUE 0.508 34.000 0.000 NA   NA
 3550848 3550849 mma_1939 mma_1940     TRUE 0.774 48.000 0.162 1.000   NA
 3550851 3550852 mma_1942 mma_1943 aceB aceA TRUE 0.799 116.000 0.084 1.000 Y NA
 3550854 3550855 mma_1945 mma_1946     FALSE 0.159 145.000 0.009 NA   NA
 3550856 3550857 mma_1947 mma_1948 cbpA2   FALSE 0.060 199.000 0.007 NA   NA
 3550858 3550859 mma_1949 mma_1950   rsuA FALSE 0.011 457.000 0.000 NA   NA
 3550860 3550861 mma_1951 mma_1952 hisC1   FALSE 0.157 146.000 0.010 NA   NA
 3550862 3550863 mma_1953 mma_1954     FALSE 0.053 201.000 0.000 1.000   NA
 3550866 3550867 mma_1957 mma_1958     TRUE 0.970 29.000 0.263 NA Y NA
 3550867 3550868 mma_1958 mma_1959     TRUE 0.990 -39.000 0.289 NA   NA
 3550868 3550869 mma_1959 mma_1960     FALSE 0.189 130.000 0.000 NA   NA
 3550869 3550870 mma_1960 mma_1961     FALSE 0.179 134.000 0.000 NA   NA
 3550870 3550871 mma_1961 mma_1962     TRUE 0.995 3.000 0.300 1.000 Y NA
 3550872 3550873 mma_1963 mma_1964   cysT TRUE 0.989 0.000 0.389 1.000 N NA
 3550873 3550874 mma_1964 mma_1965 cysT fdhD2 FALSE 0.319 94.000 0.014 1.000 N NA
 3550874 3550875 mma_1965 mma_1966 fdhD2   FALSE 0.105 227.000 0.084 NA   NA
 3550875 3550876 mma_1966 mma_1967   fdhC TRUE 0.941 13.000 0.205 NA   NA
 3550876 3550877 mma_1967 mma_1968 fdhC   TRUE 0.919 23.000 0.241 NA   NA
 3550877 3550878 mma_1968 mma_1969   fdhB2 TRUE 0.991 -3.000 0.333 NA   NA
 3550878 3550879 mma_1969 mma_1970 fdhB2 fdhA2 TRUE 0.970 66.000 0.350 0.004 Y NA
 3550879 3550880 mma_1970 mma_1971 fdhA2   TRUE 0.941 16.000 0.243 NA   NA
 3550880 3550881 mma_1971 mma_1972   torD FALSE 0.223 161.000 0.063 NA   NA
 3550881 3550882 mma_1972 mma_1973 torD   TRUE 0.878 47.000 0.221 0.058   NA
 3550882 3550883 mma_1973 mma_1974     TRUE 0.866 35.000 0.218 NA   NA
 3550883 3550884 mma_1974 mma_1975     TRUE 0.997 -10.000 0.901 NA   NA
 3550884 3550885 mma_1975 mma_1976   mrp FALSE 0.076 219.000 0.039 NA   NA
 3550886 3550887 mma_1977 mma_1978 moaA mobA TRUE 0.932 50.000 0.075 0.003 Y NA
 3550887 3550888 mma_1978 mma_1979 mobA moeA2 TRUE 0.995 0.000 0.089 0.003 Y NA
 3550888 3550889 mma_1979 mma_1980 moeA2   FALSE 0.034 208.000 0.000 NA N NA
 3550890 3550891 mma_1981 mma_1982   tatD2 TRUE 0.909 5.000 0.046 NA   NA
 3550891 3550892 mma_1982 mma_1983 tatD2 yncA FALSE 0.339 79.000 0.015 NA N NA
 3550892 3550893 mma_1983 mma_1984 yncA pilZ TRUE 0.662 24.000 0.029 NA N NA
 3550893 3550894 mma_1984 mma_1985 pilZ holB TRUE 0.968 11.000 0.382 NA N NA
 3550894 3550895 mma_1985 mma_1986 holB tmk TRUE 0.990 -3.000 0.211 0.094 N NA
 3550895 3550896 mma_1986 mma_1987 tmk   TRUE 0.791 54.000 0.209 NA   NA
 3550897 3550898 mma_1988 mma_1989     FALSE 0.414 50.000 0.006 NA   NA
 3550898 3550899 mma_1989 mma_1990     TRUE 0.940 -9.000 0.013 NA   NA
 3550900 3550901 mma_1991 mma_1992     TRUE 0.523 32.000 0.000 NA   NA
 3550902 3550903 mma_1993 mma_1994   purT FALSE 0.040 225.000 0.000 1.000   NA
 3550903 3550904 mma_1994 mma_1995 purT   TRUE 0.894 0.000 0.013 1.000 N NA
 3550907 3550908 mma_1998 mma_1999   nadC FALSE 0.009 409.000 0.000 1.000 N NA
 3550908 3550909 mma_1999 mma_2000 nadC nadA TRUE 0.998 -3.000 0.198 0.003 Y NA
 3550909 3550910 mma_2000 mma_2001 nadA   TRUE 0.526 31.000 0.003 1.000   NA
 3550910 3550911 mma_2001 mma_2002   ldcA FALSE 0.064 253.000 0.056 NA   NA
 3550911 3550912 mma_2002 mma_2003 ldcA   TRUE 0.904 4.000 0.034 NA   NA
 3550912 3550913 mma_2003 mma_2004     TRUE 0.487 37.000 0.000 NA   NA
 3550913 3550914 mma_2004 mma_2005     FALSE 0.332 87.000 0.000 1.000   NA
 3550915 3550916 mma_2006 mma_2007 benE   TRUE 0.953 0.000 0.056 NA   NA
 3550917 3550918 mma_2008 mma_2009 cumB2 ptpS TRUE 0.829 10.000 0.038 1.000 N NA
 3550918 3550919 mma_2009 mma_2010 ptpS nrdG TRUE 0.938 7.000 0.139 1.000 N NA
 3550919 3550920 mma_2010 mma_2011 nrdG yjcE FALSE 0.034 210.000 0.000 1.000 N NA
 3550920 3550921 mma_2011 mma_2012 yjcE   FALSE 0.127 170.000 0.023 NA   NA
 3550921 3550922 mma_2012 mma_2013   cydB TRUE 0.781 73.000 0.230 NA   NA
 3550922 3550923 mma_2013 mma_2014 cydB cydA TRUE 0.999 -3.000 0.953 0.058 Y NA
 3550923 3550924 mma_2014 mma_2015 cydA cydC TRUE 0.859 56.000 0.059 1.000 Y NA
 3550924 3550925 mma_2015 mma_2016 cydC cydD TRUE 0.999 -3.000 0.631 0.005 Y NA
 3550928 3550929 mma_2019 mma_2020     FALSE 0.096 165.000 0.000 1.000   NA
 3550931 3550932 mma_2022 mma_2023 fecI6 fecR6 TRUE 0.640 84.000 0.133 NA N NA
 3550932 3550933 mma_2023 mma_2024 fecR6   TRUE 0.736 91.000 0.000 NA Y NA
 3550934 3550935 mma_2025 mma_2026 bfrC fecR7 TRUE 0.753 80.000 0.000 NA Y NA
 3550935 3550936 mma_2026 mma_2027 fecR7 fecI7 TRUE 0.891 -3.000 0.000 NA N NA
 3550936 3550937 mma_2027 mma_2028 fecI7 bfrF2 FALSE 0.058 175.000 0.000 1.000 N NA
 3550937 3550938 mma_2028 mma_2029 bfrF2 fecR8 TRUE 0.585 129.000 0.000 NA Y NA
 3550938 3550939 mma_2029 mma_2030 fecR8 fecI8 TRUE 0.891 -3.000 0.000 NA N NA
 3550939 3550940 mma_2030 mma_2031 fecI8   FALSE 0.087 153.000 0.000 1.000 N NA
 3550940 3550941 mma_2031 mma_2032   guaA FALSE 0.007 498.000 0.003 1.000 N NA
 3550941 3550942 mma_2032 mma_2033 guaA   FALSE 0.345 62.000 0.002 NA   NA
 3550942 3550943 mma_2033 mma_2034   guaB TRUE 0.728 12.000 0.002 NA   NA
 3550945 3550946 mma_2036 mma_2037 rnfH   TRUE 0.954 -16.000 0.035 NA   NA
 3550948 3550949 mma_2039 mma_2040 hflC1   TRUE 0.968 14.000 0.091 NA Y NA
 3550949 3550950 mma_2040 mma_2041   ppsA FALSE 0.158 162.000 0.048 NA N NA
 3550952 3550953 mma_2043 mma_2044 spoU rnhB TRUE 0.873 18.000 0.046 0.016 N NA
 3550953 3550954 mma_2044 mma_2045 rnhB lpxB TRUE 0.889 21.000 0.186 1.000 N NA
 3550954 3550955 mma_2045 mma_2046 lpxB lpxA TRUE 0.997 -16.000 0.289 1.000 Y NA
 3550955 3550956 mma_2046 mma_2047 lpxA fabZ TRUE 0.996 0.000 0.850 1.000 N NA
 3550956 3550957 mma_2047 mma_2048 fabZ lpxD TRUE 0.997 -3.000 0.796 1.000 N NA
 3550957 3550958 mma_2048 mma_2049 lpxD   TRUE 0.995 16.000 0.814 1.000 Y NA
 3550958 3550959 mma_2049 mma_2050   ecfK TRUE 0.954 56.000 0.354 1.000 Y NA
 3550959 3550960 mma_2050 mma_2051 ecfK ecfE TRUE 0.925 57.000 0.204 1.000 Y NA
 3550960 3550961 mma_2051 mma_2052 ecfE dxr TRUE 0.995 -3.000 0.568 1.000 N NA
 3550961 3550962 mma_2052 mma_2053 dxr cdsA TRUE 0.993 8.000 0.372 1.000 Y NA
 3550962 3550963 mma_2053 mma_2054 cdsA uppS TRUE 0.998 -6.000 0.400 1.000 Y NA
 3550963 3550964 mma_2054 mma_2055 uppS rrf TRUE 0.876 50.000 0.409 1.000 N NA
 3550964 3550965 mma_2055 mma_2056 rrf pyrH TRUE 0.512 66.000 0.058 1.000 N NA
 3550965 3550966 mma_2056 mma_2057 pyrH tsf FALSE 0.132 173.000 0.047 1.000 N NA
 3550966 3550967 mma_2057 mma_2058 tsf rpsB TRUE 0.954 127.000 0.748 1.000 Y NA
 3550968 3550969 mma_2059 mma_2060 map2 glnD TRUE 0.991 7.000 0.817 1.000 N NA
 3550969 3550970 mma_2060 mma_2061 glnD   TRUE 0.766 65.000 0.237 1.000 N NA
 3550970 3550971 mma_2061 mma_2062     FALSE 0.018 268.000 0.000 1.000 N NA
 3550972 3550973 mma_2063 mma_2064 def3 galU TRUE 0.919 -3.000 0.012 1.000 N NA
 3550973 3550974 mma_2064 mma_2065 galU ligA TRUE 0.916 -7.000 0.010 1.000 N NA
 3550974 3550975 mma_2065 mma_2066 ligA zipA TRUE 0.925 7.000 0.106 1.000 N NA
 3550975 3550976 mma_2066 mma_2067 zipA smc FALSE 0.283 341.000 0.115 0.008 Y NA
 3550977 3550978 mma_2068 mma_2069 dapC dapD TRUE 0.910 54.000 0.149 1.000 Y NA
 3550978 3550979 mma_2069 mma_2070 dapD pilU2 TRUE 0.524 49.000 0.045 1.000 N NA
 3550979 3550980 mma_2070 mma_2071 pilU2 arsC1 TRUE 0.855 3.000 0.011 1.000 N NA
 3550980 3550981 mma_2071 mma_2072 arsC1 dapE TRUE 0.975 4.000 0.292 1.000 N NA
 3550981 3550982 mma_2072 mma_2073 dapE hemK2 TRUE 0.608 87.000 0.115 1.000 N NA
 3550982 3550983 mma_2073 mma_2074 hemK2   FALSE 0.038 228.000 0.000 1.000   NA
 3550983 3550984 mma_2074 mma_2075     TRUE 0.677 20.000 0.008 1.000   NA
 3550985 3550986 mma_2076 mma_2077     FALSE 0.011 457.000 0.000 NA   NA
 3550986 3550987 mma_2077 mma_2078     FALSE 0.085 172.000 0.000 NA   NA
 3550987 3550988 mma_2078 mma_2079     FALSE 0.011 460.000 0.000 NA   NA
 3550988 3550989 mma_2079 mma_2080     TRUE 0.737 12.000 0.000 NA   NA
 3550989 3550990 mma_2080 mma_2081   motB1 FALSE 0.014 383.000 0.000 NA   NA
 3550990 3550991 mma_2081 mma_2082 motB1 motA1 TRUE 0.880 29.000 0.000 1.000 Y NA
 3550991 3550992 mma_2082 mma_2083 motA1 fliA TRUE 0.981 -18.000 0.089 0.066 N NA
 3550992 3550993 mma_2083 mma_2084 fliA fleN TRUE 0.947 8.000 0.193 NA N NA
 3550993 3550994 mma_2084 mma_2085 fleN flhF TRUE 0.501 104.000 0.083 NA N NA
 3550994 3550995 mma_2085 mma_2086 flhF flhA TRUE 0.992 -3.000 0.065 1.000 Y NA
 3550995 3550996 mma_2086 mma_2087 flhA flhB TRUE 0.998 -3.000 0.287 0.010 Y NA
 3550996 3550997 mma_2087 mma_2088 flhB   FALSE 0.256 118.000 0.018 1.000 N NA
 3550997 3550998 mma_2088 mma_2089   cheZ2 TRUE 0.898 80.000 0.154 1.000 Y NA
 3550998 3550999 mma_2089 mma_2090 cheZ2 cheY2 TRUE 0.999 -49.000 0.857 1.000 Y NA
 3550999 3551000 mma_2090 mma_2091 cheY2 cheB2 TRUE 0.802 152.000 0.179 0.021 Y NA
 3551000 3551001 mma_2091 mma_2092 cheB2 cheD2 TRUE 0.942 52.000 0.256 1.000 Y NA