MicrobesOnline Operon Predictions for Neisseria meningitidis 053442

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 3543274 3543275 NMCC_0001 NMCC_0002     TRUE 0.904 4.000 0.000 NA   NA
 3543275 3543276 NMCC_0002 NMCC_0003   gltX TRUE 0.767 21.000 0.000 NA   NA
 3543276 3543277 NMCC_0003 NMCC_0004 gltX   FALSE 0.463 116.000 0.000 NA   NA
 3543277 3543278 NMCC_0004 NMCC_0005   arsC TRUE 0.879 -3.000 0.000 NA   NA
 3543279 3543280 NMCC_0006 NMCC_0007   ftsE FALSE 0.256 123.000 0.000 1.000 N NA
 3543280 3543281 NMCC_0007 NMCC_0008 ftsE ftsX TRUE 0.987 -3.000 0.121 1.000 Y NA
 3543281 3543282 NMCC_0008 NMCC_0009 ftsX   FALSE 0.344 61.000 0.000 NA N NA
 3543283 3543284 NMCC_0010 NMCC_0011 pgk   FALSE 0.324 75.000 0.000 1.000 N NA
 3543284 3543285 NMCC_0011 NMCC_0012   murA FALSE 0.251 124.000 0.000 1.000 N NA
 3543285 3543286 NMCC_0012 NMCC_0013 murA   FALSE 0.302 219.000 0.000 NA   NA
 3543286 3543287 NMCC_0013 NMCC_0014     TRUE 0.517 69.000 0.000 NA   NA
 3543287 3543288 NMCC_0014 NMCC_0015     TRUE 0.658 33.000 0.000 NA   NA
 3543288 3543289 NMCC_0015 NMCC_0016   kdtA TRUE 0.591 41.000 0.000 NA   NA
 3543289 3543290 NMCC_0016 NMCC_0017 kdtA gnd FALSE 0.324 63.000 0.000 1.000 N NA
 3543291 3543292 NMCC_0018 NMCC_0019     TRUE 0.517 65.000 0.000 NA   NA
 3543294 3543295 NMCC_0021 NMCC_0022     FALSE 0.158 441.000 0.000 NA   NA
 3543296 3543297 NMCC_0023 NMCC_0024 pilE   TRUE 0.530 608.000 0.000 0.006 Y NA
 3543297 3543298 NMCC_0024 NMCC_0025     TRUE 0.919 40.000 0.000 0.006 Y NA
 3543298 3543299 NMCC_0025 NMCC_0026     TRUE 0.817 172.000 0.000 0.006 Y NA
 3543299 3543300 NMCC_0026 NMCC_0027     TRUE 0.919 40.000 0.000 0.006 Y NA
 3543300 3543301 NMCC_0027 NMCC_0028     TRUE 0.688 29.000 0.000 1.000   NA
 3543301 3543302 NMCC_0028 NMCC_0029     FALSE 0.358 179.000 0.000 NA   NA
 3543304 3543305 NMCC_0031 NMCC_0032 metG glmS TRUE 0.906 11.000 0.000 0.068 N NA
 3543308 3543309 NMCC_0035 NMCC_0036     TRUE 0.958 -3.000 0.000 NA Y NA
 3543309 3543310 NMCC_0036 NMCC_0037     TRUE 0.511 264.000 0.000 NA Y NA
 3543311 3543312 NMCC_0038 NMCC_0039 phnA glmU FALSE 0.327 77.000 0.000 1.000 N NA
 3543312 3543313 NMCC_0039 NMCC_0040 glmU   TRUE 0.523 55.000 0.000 NA   NA
 3543313 3543314 NMCC_0040 NMCC_0041     TRUE 0.846 -7.000 0.000 NA   NA
 3543315 3543316 NMCC_0042 NMCC_0043     FALSE 0.321 94.000 0.000 1.000 N NA
 3543316 3543317 NMCC_0043 NMCC_0044     TRUE 0.729 26.000 0.000 NA   NA
 3543319 3543320 NMCC_0046 NMCC_0047     FALSE 0.053 941.000 0.000 1.000 N NA
 3543323 3543324 NMCC_0050 NMCC_0051   pilU TRUE 0.824 16.000 0.000 NA   NA
 3543324 3543325 NMCC_0051 NMCC_0052 pilU pilT TRUE 0.803 163.000 0.000 0.021 Y NA
 3543326 3543327 NMCC_0053 NMCC_0054     TRUE 0.689 30.000 0.000 NA   NA
 3543327 3543328 NMCC_0054 NMCC_0055   proC TRUE 0.522 79.000 0.000 NA   NA
 3543328 3543329 NMCC_0055 NMCC_0056 proC dksA FALSE 0.220 147.000 0.000 1.000 N NA
 3543331 3543332 NMCC_0058 NMCC_0059     FALSE 0.433 123.000 0.000 NA   NA
 3543332 3543333 NMCC_0059 NMCC_0060     TRUE 0.901 6.000 0.000 NA   NA
 3543333 3543334 NMCC_0060 NMCC_0061     FALSE 0.173 407.000 0.000 NA   NA
 3543334 3543335 NMCC_0061 NMCC_0063     FALSE 0.188 379.000 0.000 NA   NA
 3543335 3543336 NMCC_0063 NMCC_0064     TRUE 0.518 66.000 0.000 NA   NA
 3543336 3543337 NMCC_0064 NMCC_0065     TRUE 0.702 29.000 0.000 NA   NA
 3543339 3543340 NMCC_0067 NMCC_0068 dnaJ   FALSE 0.333 196.000 0.000 NA   NA
 3543341 3543342 NMCC_0069 NMCC_0070 rfbC rfbA TRUE 0.769 54.000 0.000 1.000 Y NA
 3543342 3543343 NMCC_0070 NMCC_0071 rfbA rfbB TRUE 0.973 -81.000 0.074 0.006 Y NA
 3543343 3543344 NMCC_0071 NMCC_0072 rfbB galE TRUE 0.873 116.000 0.000 0.005 Y NA
 3543346 3543347 NMCC_0074 NMCC_0075   siaD TRUE 0.702 29.000 0.000 NA   NA
 3543347 3543348 NMCC_0075 NMCC_0076 siaD siaC FALSE 0.282 239.000 0.000 NA   NA
 3543348 3543349 NMCC_0076 NMCC_0077 siaC siaB TRUE 0.973 1.000 0.020 1.000 Y NA
 3543349 3543350 NMCC_0077 NMCC_0078 siaB synX TRUE 0.995 4.000 0.111 0.009 Y NA
 3543351 3543352 NMCC_0079 NMCC_0080 ctrA ctrB TRUE 0.976 15.000 0.088 1.000 Y NA
 3543352 3543353 NMCC_0080 NMCC_0081 ctrB ctrC TRUE 0.890 72.000 0.083 1.000 Y NA
 3543353 3543354 NMCC_0081 NMCC_0082 ctrC ctrD TRUE 0.998 -3.000 0.418 1.000 Y NA
 3543354 3543355 NMCC_0082 NMCC_0083 ctrD tex FALSE 0.308 61.000 0.007 1.000 N NA
 3543355 3543356 NMCC_0083 NMCC_0084 tex   TRUE 0.677 31.000 0.000 NA   NA
 3543356 3543357 NMCC_0084 NMCC_0085     TRUE 0.859 -4.000 0.000 NA   NA
 3543357 3543358 NMCC_0085 NMCC_0086   galE2 TRUE 0.499 58.000 0.000 1.000   NA
 3543358 3543359 NMCC_0086 NMCC_0087 galE2 rfbB2 TRUE 0.863 116.000 0.000 0.008 Y NA
 3543359 3543360 NMCC_0087 NMCC_0088 rfbB2 rfbA2 TRUE 0.973 -81.000 0.074 0.006 Y NA
 3543360 3543361 NMCC_0088 NMCC_0089 rfbA2 rfbC2 TRUE 0.769 54.000 0.000 1.000 Y NA
 3543361 3543362 NMCC_0089 NMCC_0090 rfbC2 lipA TRUE 0.896 24.000 0.000 1.000 Y NA
 3543362 3543363 NMCC_0090 NMCC_0091 lipA lipB TRUE 0.984 137.000 0.315 0.002 Y NA
 3543363 3543364 NMCC_0091 NMCC_0092 lipB   FALSE 0.142 493.000 0.000 1.000   NA
 3543364 3543365 NMCC_0092 NMCC_0093   gltS FALSE 0.290 218.000 0.000 1.000   NA
 3543365 3543366 NMCC_0093 NMCC_0094 gltS   TRUE 0.501 99.000 0.000 NA   NA
 3543366 3543367 NMCC_0094 NMCC_0095     TRUE 0.873 11.000 0.000 NA   NA
 3543367 3543368 NMCC_0095 NMCC_0096     TRUE 0.890 9.000 0.000 NA   NA
 3543369 3543370 NMCC_0097 NMCC_0098   pykA FALSE 0.448 34.000 0.000 1.000 N NA
 3543371 3543372 NMCC_0099 NMCC_0100     FALSE 0.138 556.000 0.000 NA   NA
 3543372 3543373 NMCC_0100 NMCC_0101     TRUE 0.509 83.000 0.000 1.000   NA
 3543373 3543374 NMCC_0101 NMCC_0102   cysS TRUE 0.875 10.000 0.000 1.000   NA
 3543374 3543375 NMCC_0102 NMCC_0103 cysS exoA FALSE 0.150 242.000 0.000 1.000 N NA
 3543375 3543376 NMCC_0103 NMCC_0104 exoA   FALSE 0.201 342.000 0.000 NA   NA
 3543380 3543381 NMCC_0108 NMCC_0109     TRUE 0.735 25.000 0.000 NA   NA
 3543381 3543382 NMCC_0109 NMCC_0110     TRUE 0.713 28.000 0.000 NA   NA
 3543382 3543383 NMCC_0110 NMCC_0111     FALSE 0.393 136.000 0.000 NA   NA
 3543383 3543384 NMCC_0111 NMCC_0112   birA TRUE 0.846 -3.000 0.004 1.000   NA
 3543384 3543385 NMCC_0112 NMCC_0113 birA   FALSE 0.475 113.000 0.000 NA   NA
 3543386 3543387 NMCC_0114 NMCC_0115 thiG thiS TRUE 0.740 214.000 0.064 1.000 Y NA
 3543387 3543388 NMCC_0115 NMCC_0116 thiS thiE FALSE 0.368 422.000 0.000 1.000 Y NA
 3543388 3543389 NMCC_0116 NMCC_0117 thiE thiO TRUE 0.586 22.000 0.000 1.000 N NA
 3543389 3543390 NMCC_0117 NMCC_0118 thiO cytX TRUE 0.848 -3.000 0.018 1.000 N NA
 3543391 3543392 NMCC_0119 NMCC_0120 tldD   TRUE 0.517 65.000 0.000 NA   NA
 3543392 3543393 NMCC_0120 NMCC_0121   hemK TRUE 0.486 107.000 0.000 NA   NA
 3543393 3543394 NMCC_0121 NMCC_0122 hemK   TRUE 0.508 86.000 0.000 1.000   NA
 3543394 3543395 NMCC_0122 NMCC_0123   slyX TRUE 0.906 1.000 0.008 NA   NA
 3543397 3543398 NMCC_0124 NMCC_0126 ppc gpsA TRUE 0.693 123.000 0.000 1.000 Y NA
 3543398 3543399 NMCC_0126 NMCC_0127 gpsA   TRUE 0.507 55.000 0.000 1.000   NA
 3543399 3543400 NMCC_0127 NMCC_0128     TRUE 0.873 11.000 0.000 NA   NA
 3543400 3543401 NMCC_0128 NMCC_0129   rplM FALSE 0.193 363.000 0.000 NA   NA
 3543401 3543402 NMCC_0129 NMCC_0130 rplM rpsI TRUE 0.999 10.000 0.601 0.032 Y NA
 3543404 3543405 NMCC_0132 NMCC_0133   petA TRUE 0.510 123.000 0.013 NA   NA
 3543405 3543406 NMCC_0133 NMCC_0134 petA petB TRUE 0.979 19.000 0.029 0.002 Y NA
 3543406 3543407 NMCC_0134 NMCC_0135 petB petC TRUE 1.000 15.000 0.630 0.002 Y NA
 3543407 3543408 NMCC_0135 NMCC_0136 petC   FALSE 0.170 408.000 0.000 NA   NA
 3543410 3543411 NMCC_0138 NMCC_0139   hpt TRUE 0.500 30.000 0.000 1.000 N NA
 3543411 3543412 NMCC_0139 NMCC_0140 hpt   TRUE 0.809 3.000 0.000 1.000 N NA
 3543412 3543413 NMCC_0140 NMCC_0141   ptsH TRUE 0.986 69.000 0.261 0.004 Y NA
 3543413 3543414 NMCC_0141 NMCC_0142 ptsH ptsI TRUE 0.998 0.000 0.205 0.003 Y NA
 3543415 3543416 NMCC_0143 NMCC_0144     TRUE 0.896 0.000 0.000 NA   NA
 3543416 3543417 NMCC_0144 NMCC_0145     TRUE 0.884 9.000 0.000 1.000   NA
 3543417 3543418 NMCC_0145 NMCC_0146     TRUE 0.633 35.000 0.000 NA   NA
 3543420 3543421 NMCC_0148 NMCC_0149 pivNM-1B   FALSE 0.307 215.000 0.000 NA   NA
 3543421 3543422 NMCC_0149 NMCC_0150     TRUE 0.525 82.000 0.000 NA   NA
 3543422 3543423 NMCC_0150 NMCC_0151   tspB FALSE 0.108 945.000 0.000 NA   NA
 3543423 3543424 NMCC_0151 NMCC_0152 tspB   FALSE 0.166 419.000 0.000 NA   NA
 3543424 3543425 NMCC_0152 NMCC_0153     TRUE 0.713 28.000 0.000 NA   NA
 3543425 3543426 NMCC_0153 NMCC_0154     FALSE 0.283 238.000 0.000 NA   NA
 3543426 3543427 NMCC_0154 NMCC_0155     TRUE 0.904 4.000 0.000 NA   NA
 3543427 3543428 NMCC_0155 NMCC_0156     TRUE 0.863 12.000 0.000 NA   NA
 3543428 3543429 NMCC_0156 NMCC_0157     FALSE 0.096 1470.000 0.000 NA   NA
 3543429 3543430 NMCC_0157 NMCC_0158   porB FALSE 0.419 126.000 0.000 NA   NA
 3543430 3543431 NMCC_0158 NMCC_0159 porB chpA1 FALSE 0.045 1802.000 0.000 1.000 N NA
 3543431 3543432 NMCC_0159 NMCC_0160 chpA1   TRUE 0.994 -6.000 0.264 NA Y NA
 3543432 3543433 NMCC_0160 NMCC_0161   truA FALSE 0.275 123.000 0.000 NA N NA
 3543433 3543434 NMCC_0161 NMCC_0162 truA   FALSE 0.127 628.000 0.000 NA   NA
 3543434 3543435 NMCC_0162 NMCC_0163     FALSE 0.105 974.000 0.000 NA   NA
 3543435 3543436 NMCC_0163 NMCC_0164   nlaB TRUE 0.930 -3.000 0.034 NA   NA
 3543436 3543437 NMCC_0164 NMCC_0166 nlaB   TRUE 0.879 138.000 0.310 1.000 N NA
 3543438 3543439 NMCC_0165 NMCC_0167     FALSE 0.376 166.000 0.000 NA   NA
 3543441 3543442 NMCC_0169 NMCC_0170 ubiG thrB TRUE 0.603 37.000 0.000 1.000   NA
 3543443 3543444 NMCC_0171 NMCC_0172 gntK gntP TRUE 0.913 20.000 0.000 1.000 Y NA
 3543445 3543446 NMCC_0173 NMCC_0174     TRUE 0.874 29.000 0.000 1.000 Y NA
 3543446 3543447 NMCC_0174 NMCC_0175     TRUE 0.899 -3.000 0.045 1.000 N NA
 3543447 3543448 NMCC_0175 NMCC_0176     TRUE 0.684 59.000 0.044 NA   NA
 3543448 3543449 NMCC_0176 NMCC_0177     TRUE 0.948 54.000 0.307 NA   NA
 3543449 3543450 NMCC_0177 NMCC_0178     TRUE 0.514 73.000 0.000 NA   NA
 3543450 3543451 NMCC_0178 NMCC_0179     FALSE 0.381 157.000 0.000 NA   NA
 3543451 3543452 NMCC_0179 NMCC_0180   kdtB FALSE 0.426 124.000 0.000 NA   NA
 3543452 3543453 NMCC_0180 NMCC_0181 kdtB   TRUE 0.482 -25.000 0.004 1.000 N NA
 3543453 3543454 NMCC_0181 NMCC_0182     FALSE 0.112 876.000 0.000 NA   NA
 3543454 3543455 NMCC_0182 NMCC_0183     FALSE 0.433 123.000 0.000 NA   NA
 3543455 3543456 NMCC_0183 NMCC_0184     TRUE 0.901 6.000 0.000 NA   NA
 3543456 3543457 NMCC_0184 NMCC_0185     FALSE 0.173 407.000 0.000 NA   NA
 3543457 3543458 NMCC_0185 NMCC_0187     FALSE 0.188 379.000 0.000 NA   NA
 3543458 3543459 NMCC_0187 NMCC_0188     FALSE 0.458 117.000 0.000 NA   NA
 3543459 3543460 NMCC_0188 NMCC_0189     FALSE 0.350 88.000 0.000 NA N NA
 3543461 3543462 NMCC_0190 NMCC_0191     FALSE 0.247 271.000 0.000 NA   NA
 3543463 3543464 NMCC_0192 NMCC_0193     TRUE 0.931 220.000 0.433 NA   NA
 3543465 3543466 NMCC_0194 NMCC_0195 hrpA   TRUE 0.502 66.000 0.000 1.000   NA
 3543466 3543467 NMCC_0195 NMCC_0196     FALSE 0.357 180.000 0.000 NA   NA
 3543467 3543468 NMCC_0196 NMCC_0197   hrpA' TRUE 0.495 101.000 0.000 NA   NA
 3543468 3543469 NMCC_0197 NMCC_0198 hrpA'   TRUE 0.499 58.000 0.000 1.000   NA
 3543469 3543470 NMCC_0198 NMCC_0199   argJ FALSE 0.220 147.000 0.000 1.000 N NA
 3543470 3543471 NMCC_0199 NMCC_0200 argJ   FALSE 0.327 67.000 0.000 1.000 N NA
 3543471 3543472 NMCC_0200 NMCC_0201     TRUE 0.983 0.000 0.186 1.000   NA
 3543472 3543473 NMCC_0201 NMCC_0202     TRUE 0.879 -3.000 0.000 NA   NA
 3543473 3543474 NMCC_0202 NMCC_0203     TRUE 0.548 50.000 0.000 NA   NA
 3543474 3543475 NMCC_0203 NMCC_0204     TRUE 0.904 19.000 0.057 NA   NA
 3543477 3543478 NMCC_0206 NMCC_0207 mgtE ausI FALSE 0.288 232.000 0.000 NA   NA
 3543478 3543479 NMCC_0207 NMCC_0208 ausI golB FALSE 0.198 350.000 0.000 NA   NA
 3543479 3543480 NMCC_0208 NMCC_0209 golB purL TRUE 0.493 95.000 0.000 1.000   NA
 3543482 3543483 NMCC_0211 NMCC_0212     FALSE 0.354 84.000 0.000 NA N NA
 3543483 3543484 NMCC_0212 NMCC_0213     FALSE 0.400 45.000 0.000 NA N NA
 3543484 3543485 NMCC_0213 NMCC_0214     TRUE 1.000 -10.000 0.870 0.031 Y NA
 3543485 3543486 NMCC_0214 NMCC_0215   fetB TRUE 0.969 164.000 0.356 1.000 Y NA
 3543486 3543487 NMCC_0215 NMCC_0216 fetB frpB FALSE 0.244 1248.000 0.000 1.000 Y NA
 3543488 3543489 NMCC_0217 NMCC_0218     FALSE 0.374 168.000 0.000 NA   NA
 3543489 3543490 NMCC_0218 NMCC_0219     FALSE 0.175 404.000 0.000 NA   NA
 3543492 3543493 NMCC_0221 NMCC_0222     TRUE 0.879 -3.000 0.000 NA   NA
 3543493 3543494 NMCC_0222 NMCC_0223   app FALSE 0.396 134.000 0.000 NA   NA
 3543495 3543496 NMCC_0224 NMCC_0225     TRUE 0.509 81.000 0.000 1.000   NA
 3543496 3543497 NMCC_0225 NMCC_0226     FALSE 0.216 313.000 0.000 NA   NA
 3543497 3543498 NMCC_0226 NMCC_0227     FALSE 0.345 188.000 0.000 NA   NA
 3543498 3543499 NMCC_0227 NMCC_0228     FALSE 0.254 263.000 0.000 NA   NA
 3543500 3543501 NMCC_0229 NMCC_0230     FALSE 0.280 654.000 0.000 0.020   NA
 3543502 3543503 NMCC_0231 NMCC_0232 polA   FALSE 0.220 146.000 0.000 1.000 N NA
 3543503 3543504 NMCC_0232 NMCC_0233     TRUE 0.758 22.000 0.000 NA   NA
 3543504 3543505 NMCC_0233 NMCC_0234     FALSE 0.337 194.000 0.000 NA   NA
 3543505 3543506 NMCC_0234 NMCC_0235   cyaY TRUE 0.722 27.000 0.000 NA   NA
 3543507 3543508 NMCC_0236 NMCC_0237   lysA TRUE 0.951 11.000 0.071 NA   NA
 3543509 3543510 NMCC_0238 NMCC_0239     FALSE 0.458 117.000 0.000 NA   NA
 3543511 3543512 NMCC_0240 NMCC_0241 groES groEL TRUE 0.996 94.000 0.538 0.014 Y NA
 3543512 3543513 NMCC_0241 NMCC_0242 groEL   FALSE 0.116 698.000 0.000 1.000   NA
 3543514 3543515 NMCC_0243 NMCC_0244   ausP FALSE 0.092 1384.000 0.000 1.000   NA
 3543515 3543516 NMCC_0244 NMCC_0245 ausP aldA FALSE 0.094 1199.000 0.000 1.000   NA
 3543516 3543517 NMCC_0245 NMCC_0246 aldA   TRUE 0.633 35.000 0.000 NA   NA
 3543517 3543518 NMCC_0246 NMCC_0247     TRUE 0.890 9.000 0.000 NA   NA
 3543518 3543519 NMCC_0247 NMCC_0248     FALSE 0.319 208.000 0.000 NA   NA
 3543520 3543521 NMCC_0249 NMCC_0250     TRUE 0.993 48.000 0.530 NA Y NA
 3543521 3543522 NMCC_0250 NMCC_0251     TRUE 0.985 51.000 0.562 NA   NA
 3543522 3543523 NMCC_0251 NMCC_0252     TRUE 0.667 37.000 0.010 NA   NA
 3543523 3543524 NMCC_0252 NMCC_0253     TRUE 0.658 33.000 0.000 NA   NA
 3543524 3543525 NMCC_0253 NMCC_0254     TRUE 0.879 -3.000 0.000 NA   NA
 3543525 3543526 NMCC_0254 NMCC_0255     TRUE 0.903 5.000 0.000 NA   NA
 3543526 3543527 NMCC_0255 NMCC_0256     TRUE 0.896 0.000 0.000 NA   NA
 3543527 3543528 NMCC_0256 NMCC_0257     TRUE 0.940 -3.000 0.048 1.000   NA
 3543530 3543531 NMCC_0259 NMCC_0260 rpmE cad FALSE 0.119 315.000 0.000 NA N NA
 3543531 3543532 NMCC_0260 NMCC_0261 cad   TRUE 0.546 -43.000 0.000 NA N NA
 3543532 3543533 NMCC_0261 NMCC_0262   sspA FALSE 0.325 102.000 0.000 NA N NA
 3543533 3543534 NMCC_0262 NMCC_0263 sspA sspB TRUE 0.989 183.000 0.831 NA   NA
 3543534 3543535 NMCC_0263 NMCC_0264 sspB   TRUE 0.744 24.000 0.000 NA   NA
 3543536 3543537 NMCC_0265 NMCC_0266   rpsU TRUE 0.952 36.000 0.173 0.048   NA
 3543537 3543538 NMCC_0266 NMCC_0267 rpsU   FALSE 0.159 224.000 0.000 1.000 N NA
 3543539 3543540 NMCC_0268 NMCC_0269     FALSE 0.383 153.000 0.000 NA   NA
 3543540 3543541 NMCC_0269 NMCC_0270     TRUE 0.925 89.000 0.135 1.000 Y NA
 3543541 3543542 NMCC_0270 NMCC_0271     TRUE 0.946 202.000 0.308 NA Y NA
 3543544 3543545 NMCC_0272 NMCC_0274 parB   TRUE 0.540 52.000 0.000 NA   NA
 3543547 3543548 NMCC_0276 NMCC_0277   atpI FALSE 0.383 154.000 0.000 NA   NA
 3543548 3543549 NMCC_0277 NMCC_0278 atpI atpB TRUE 0.993 -10.000 0.291 1.000 Y NA
 3543549 3543550 NMCC_0278 NMCC_0279 atpB atpE TRUE 0.992 57.000 0.557 0.006   NA
 3543550 3543551 NMCC_0279 NMCC_0280 atpE atpF TRUE 0.995 71.000 0.666 0.006   NA
 3543551 3543552 NMCC_0280 NMCC_0281 atpF atpH TRUE 0.998 5.000 0.242 0.006 Y NA
 3543552 3543553 NMCC_0281 NMCC_0282 atpH atpA TRUE 1.000 11.000 0.864 0.006 Y NA
 3543553 3543554 NMCC_0282 NMCC_0283 atpA atpG TRUE 1.000 25.000 0.846 0.006 Y NA
 3543554 3543555 NMCC_0283 NMCC_0284 atpG atpD TRUE 0.999 38.000 0.724 0.006 Y NA
 3543555 3543556 NMCC_0284 NMCC_0285 atpD atpC TRUE 1.000 11.000 0.837 0.006 Y NA
 3543556 3543557 NMCC_0285 NMCC_0286 atpC glyQ FALSE 0.107 323.000 0.000 1.000 N NA
 3543557 3543558 NMCC_0286 NMCC_0287 glyQ   TRUE 0.519 77.000 0.000 NA   NA
 3543558 3543559 NMCC_0287 NMCC_0288   glyS TRUE 0.767 21.000 0.000 NA   NA
 3543559 3543560 NMCC_0288 NMCC_0289 glyS lgtA TRUE 0.685 17.000 0.000 NA N NA
 3543560 3543561 NMCC_0289 NMCC_0290 lgtA lgtB TRUE 0.639 174.000 0.000 NA Y NA
 3543561 3543562 NMCC_0290 NMCC_0291 lgtB   TRUE 0.863 12.000 0.000 NA   NA
 3543562 3543563 NMCC_0291 NMCC_0292   lgtE TRUE 0.515 63.000 0.000 NA   NA
 3543566 3543567 NMCC_0295 NMCC_0296     FALSE 0.199 349.000 0.000 NA   NA
 3543569 3543570 NMCC_0298 NMCC_0299 fabG guaA FALSE 0.323 62.000 0.000 1.000 N NA
 3543570 3543571 NMCC_0299 NMCC_0300 guaA msbA FALSE 0.310 100.000 0.000 1.000 N NA
 3543571 3543572 NMCC_0300 NMCC_0301 msbA fabD TRUE 0.514 -54.000 0.000 1.000 N NA
 3543572 3543573 NMCC_0301 NMCC_0302 fabD   FALSE 0.347 186.000 0.000 NA   NA
 3543573 3543574 NMCC_0302 NMCC_0303   fabH TRUE 0.563 47.000 0.000 NA   NA
 3543574 3543575 NMCC_0303 NMCC_0304 fabH   FALSE 0.269 250.000 0.000 NA   NA
 3543575 3543576 NMCC_0304 NMCC_0305     TRUE 0.722 27.000 0.000 NA   NA
 3543576 3543577 NMCC_0305 NMCC_0306     TRUE 0.805 18.000 0.000 NA   NA
 3543577 3543578 NMCC_0306 NMCC_0307   plsX FALSE 0.393 136.000 0.000 NA   NA
 3543578 3543579 NMCC_0307 NMCC_0308 plsX   FALSE 0.260 247.000 0.000 1.000   NA
 3543579 3543580 NMCC_0308 NMCC_0309   rpmF FALSE 0.347 175.000 0.000 1.000   NA
 3543580 3543581 NMCC_0309 NMCC_0310 rpmF   TRUE 0.991 34.000 0.599 NA   NA
 3543582 3543583 NMCC_0311 NMCC_0312     TRUE 0.812 62.000 0.107 NA   NA
 3543584 3543585 NMCC_0313 NMCC_0314     TRUE 0.952 172.000 0.461 NA   NA
 3543585 3543586 NMCC_0314 NMCC_0315   rnpA TRUE 0.982 65.000 0.540 NA   NA
 3543586 3543587 NMCC_0315 NMCC_0316 rnpA rpmH TRUE 0.998 33.000 0.787 1.000 Y NA
 3543588 3543589 NMCC_0317 NMCC_0318 dnaA dnaN TRUE 0.942 235.000 0.328 1.000 Y NA
 3543590 3543591 NMCC_0319 NMCC_0320   ppk FALSE 0.098 395.000 0.000 NA N NA
 3543591 3543592 NMCC_0320 NMCC_0321 ppk   FALSE 0.373 169.000 0.000 NA   NA
 3543592 3543593 NMCC_0321 NMCC_0322   mlp TRUE 0.854 13.000 0.000 NA   NA
 3543594 3543595 NMCC_0323 NMCC_0324 leuS drg FALSE 0.373 141.000 0.000 1.000   NA
 3543595 3543596 NMCC_0324 NMCC_0325 drg   TRUE 0.873 -3.000 0.000 1.000   NA
 3543596 3543597 NMCC_0325 NMCC_0326     TRUE 0.846 -7.000 0.000 NA   NA
 3543597 3543598 NMCC_0326 NMCC_0327     TRUE 0.752 23.000 0.000 NA   NA
 3543599 3543600 NMCC_0328 NMCC_0329     TRUE 0.901 6.000 0.000 NA   NA
 3543600 3543601 NMCC_0329 NMCC_0330     TRUE 0.879 -3.000 0.000 NA   NA
 3543603 3543604 NMCC_0332 NMCC_0333   secG TRUE 0.845 14.000 0.000 NA   NA
 3543604 3543605 NMCC_0333 NMCC_0334 secG tpi TRUE 0.834 7.000 0.009 1.000 N NA
 3543606 3543607 NMCC_0335 NMCC_0336   pcm FALSE 0.325 102.000 0.000 NA N NA
 3543607 3543608 NMCC_0336 NMCC_0337 pcm   TRUE 0.861 79.000 0.200 NA N NA
 3543609 3543610 NMCC_0338 NMCC_0339     FALSE 0.371 170.000 0.000 NA   NA
 3543610 3543611 NMCC_0339 NMCC_0340     TRUE 0.620 114.000 0.000 0.014 N NA
 3543611 3543612 NMCC_0340 NMCC_0341     FALSE 0.224 304.000 0.000 NA   NA
 3543612 3543613 NMCC_0341 NMCC_0342   fetB2 TRUE 0.517 76.000 0.000 NA   NA
 3543615 3543616 NMCC_0344 NMCC_0345   argA TRUE 0.752 96.000 0.000 1.000 Y NA
 3543616 3543617 NMCC_0345 NMCC_0346 argA   TRUE 0.879 -3.000 0.000 NA   NA
 3543617 3543618 NMCC_0346 NMCC_0347   pyrE TRUE 0.514 74.000 0.000 NA   NA
 3543618 3543619 NMCC_0347 NMCC_0348 pyrE   FALSE 0.323 62.000 0.000 1.000 N NA
 3543619 3543620 NMCC_0348 NMCC_0349     TRUE 0.955 -6.000 0.096 1.000   NA
 3543620 3543621 NMCC_0349 NMCC_0350     TRUE 0.985 -3.000 0.209 1.000   NA
 3543621 3543622 NMCC_0350 NMCC_0351     FALSE 0.389 140.000 0.000 NA   NA
 3543622 3543623 NMCC_0351 NMCC_0352   fba FALSE 0.381 158.000 0.000 NA   NA
 3543624 3543625 NMCC_0353 NMCC_0354 xerC dxs FALSE 0.333 85.000 0.000 1.000 N NA
 3543627 3543628 NMCC_0356 NMCC_0357   hemL TRUE 0.516 64.000 0.000 NA   NA
 3543629 3543630 NMCC_0358 NMCC_0359 orn prmA TRUE 0.651 18.000 0.000 1.000 N NA
 3543630 3543631 NMCC_0359 NMCC_0360 prmA accC TRUE 0.954 13.000 0.152 1.000 N NA
 3543631 3543632 NMCC_0360 NMCC_0361 accC accB TRUE 0.977 183.000 0.275 0.001 Y NA
 3543633 3543634 NMCC_0362 NMCC_0363   queA FALSE 0.364 174.000 0.000 NA   NA
 3543634 3543635 NMCC_0363 NMCC_0364 queA   TRUE 0.793 19.000 0.000 NA   NA
 3543638 3543639 NMCC_0367 NMCC_0368 carB   TRUE 0.899 7.000 0.000 NA   NA
 3543639 3543640 NMCC_0368 NMCC_0369     TRUE 0.926 3.000 0.013 NA   NA
 3543640 3543641 NMCC_0369 NMCC_0370     FALSE 0.107 851.000 0.000 1.000   NA
 3543641 3543642 NMCC_0370 NMCC_0371     FALSE 0.205 331.000 0.000 NA   NA
 3543642 3543643 NMCC_0371 NMCC_0372     FALSE 0.468 115.000 0.000 NA   NA
 3543643 3543644 NMCC_0372 NMCC_0373   carA TRUE 0.569 46.000 0.000 NA   NA
 3543646 3543647 NMCC_0375 NMCC_0376 pilC1   FALSE 0.054 1047.000 0.000 NA N NA
 11422776 3543648   NMCC_0377     FALSE NA 1629.000 0.000 NA   NA
 11565139 3543648   NMCC_0377     FALSE NA 1629.000 0.000 NA   NA
 11707531 3543648   NMCC_0377     FALSE NA 1629.000 0.000 NA   NA
 11422777 3543648   NMCC_0377     FALSE NA 1587.000 0.000 NA   NA
 11565140 3543648   NMCC_0377     FALSE NA 1587.000 0.000 NA   NA
 11707532 3543648   NMCC_0377     FALSE NA 1587.000 0.000 NA   NA
 11422778 3543648   NMCC_0377     FALSE NA 1561.000 0.000 NA   NA
 11565141 3543648   NMCC_0377     FALSE NA 1561.000 0.000 NA   NA
 11707533 3543648   NMCC_0377     FALSE NA 1561.000 0.000 NA   NA
 11422779 3543648   NMCC_0377     FALSE NA 1513.000 0.000 NA   NA
 11565142 3543648   NMCC_0377     FALSE NA 1513.000 0.000 NA   NA
 11707534 3543648   NMCC_0377     FALSE NA 1513.000 0.000 NA   NA
 11422780 3543648   NMCC_0377     FALSE NA 1487.000 0.000 NA   NA
 11565143 3543648   NMCC_0377     FALSE NA 1487.000 0.000 NA   NA
 11707535 3543648   NMCC_0377     FALSE NA 1487.000 0.000 NA   NA
 3543648 3543649 NMCC_0377 NMCC_0378     TRUE 0.522 79.000 0.000 NA   NA
 3543649 3543650 NMCC_0378 NMCC_0379   farR FALSE 0.087 406.000 0.000 1.000 N NA
 3543650 3543651 NMCC_0379 NMCC_0380 farR   FALSE 0.452 115.000 0.000 1.000   NA
 3543651 3543652 NMCC_0380 NMCC_0381     TRUE 0.814 16.000 0.000 1.000   NA
 3543654 3543655 NMCC_0383 NMCC_0384 fhs   FALSE 0.288 114.000 0.000 1.000 N NA
 3543655 3543656 NMCC_0384 NMCC_0385     FALSE 0.404 130.000 0.000 NA   NA
 3543656 3543657 NMCC_0385 NMCC_0386   wbpC TRUE 0.523 55.000 0.000 NA   NA
 3543657 3543658 NMCC_0386 NMCC_0387 wbpC tyrS FALSE 0.323 62.000 0.000 1.000 N NA
 3543658 3543659 NMCC_0387 NMCC_0388 tyrS ribF FALSE 0.323 263.000 0.000 0.061 N NA
 3543659 3543660 NMCC_0388 NMCC_0389 ribF ileS TRUE 0.902 141.000 0.254 0.061 N NA
 3543660 3543661 NMCC_0389 NMCC_0390 ileS lsp FALSE 0.182 787.000 0.071 1.000 N NA
 3543661 3543662 NMCC_0390 NMCC_0391 lsp lytB TRUE 0.898 30.000 0.019 1.000 Y NA
 3543663 3543664 NMCC_0392 NMCC_0393     FALSE 0.475 103.000 0.000 1.000   NA
 3543664 3543665 NMCC_0393 NMCC_0394     FALSE 0.101 1166.000 0.000 NA   NA
 3543665 3543666 NMCC_0394 NMCC_0395     TRUE 0.999 -7.000 0.876 NA   NA
 3543666 3543667 NMCC_0395 NMCC_0396     TRUE 0.625 76.000 0.021 NA   NA
 3543667 3543668 NMCC_0396 NMCC_0397     TRUE 0.983 67.000 0.546 NA   NA
 3543668 3543669 NMCC_0397 NMCC_0398   dnaE FALSE 0.452 278.000 0.000 0.021   NA
 3543670 3543671 NMCC_0399 NMCC_0400     TRUE 0.764 -22.000 0.000 NA   NA
 3543671 3543672 NMCC_0400 NMCC_0401     FALSE 0.157 445.000 0.000 NA   NA
 3543673 3543674 NMCC_0402 NMCC_0403 avtA pglD TRUE 0.790 -133.000 0.000 0.017 N NA
 3543674 3543675 NMCC_0403 NMCC_0404 pglD pglC TRUE 0.879 48.000 0.054 1.000 Y NA
 3543677 3543678 NMCC_0406 NMCC_0407 pglB2   TRUE 0.837 -7.000 0.000 1.000   NA
 3543678 3543679 NMCC_0407 NMCC_0409     TRUE 0.726 -36.000 0.000 NA   NA
 3543681 3543682 NMCC_0410 NMCC_0411   ribD FALSE 0.320 195.000 0.000 1.000   NA
 3543682 3543683 NMCC_0411 NMCC_0412 ribD   TRUE 0.796 224.000 0.277 NA N NA
 3543683 3543684 NMCC_0412 NMCC_0413     TRUE 0.704 -49.000 0.000 NA   NA
 3543684 3543685 NMCC_0413 NMCC_0414   aroB FALSE 0.212 1155.000 0.000 0.037   NA
 3543685 3543686 NMCC_0414 NMCC_0415 aroB aroK TRUE 0.957 80.000 0.208 1.000 Y NA
 3543686 3543687 NMCC_0415 NMCC_0416 aroK pilQ TRUE 0.577 1178.000 0.319 1.000 N NA
 3543687 3543688 NMCC_0416 NMCC_0417 pilQ pilP TRUE 0.999 19.000 0.668 NA Y NA
 3543688 3543689 NMCC_0417 NMCC_0418 pilP pilO TRUE 0.999 18.000 0.680 NA Y NA
 3543689 3543690 NMCC_0418 NMCC_0419 pilO pilN TRUE 1.000 1.000 0.770 NA Y NA
 3543690 3543691 NMCC_0419 NMCC_0420 pilN pilM TRUE 0.999 3.000 0.616 NA Y NA
 3543694 3543695 NMCC_0423 NMCC_0424 cyc   FALSE 0.135 277.000 0.000 NA N NA
 3543695 3543696 NMCC_0424 NMCC_0425     TRUE 0.997 -7.000 0.399 NA Y NA
 3543696 3543697 NMCC_0425 NMCC_0426   gcp FALSE 0.411 366.000 0.000 1.000 Y NA
 3543699 3543700 NMCC_0428 NMCC_0429 metK   FALSE 0.087 434.000 0.000 NA N NA
 3543700 3543701 NMCC_0429 NMCC_0430     TRUE 0.690 -73.000 0.000 NA   NA
 3543703 3543704 NMCC_0432 NMCC_0433     FALSE 0.136 558.000 0.000 NA   NA
 3543704 3543705 NMCC_0433 NMCC_0433a     FALSE 0.296 223.000 0.000 NA   NA
 3543705 3543706 NMCC_0433a NMCC_0434     TRUE 0.514 72.000 0.000 NA   NA
 3543708 3543709 NMCC_0436 NMCC_0437 grxC secB TRUE 0.957 21.000 0.221 1.000 N NA
 3543709 3543710 NMCC_0437 NMCC_0438 secB recG FALSE 0.332 86.000 0.000 1.000 N NA
 3543711 3543712 NMCC_0439 NMCC_0440 argC   TRUE 0.879 -3.000 0.000 NA   NA
 3543713 3543714 NMCC_0441 NMCC_0442     FALSE 0.311 213.000 0.000 NA   NA
 3543714 3543715 NMCC_0442 NMCC_0443     TRUE 0.982 19.000 0.286 NA   NA
 3543715 3543716 NMCC_0443 NMCC_0444     FALSE 0.290 229.000 0.000 NA   NA
 3543716 3543717 NMCC_0444 NMCC_0445     TRUE 0.514 61.000 0.000 NA   NA
 3543717 3543718 NMCC_0445 NMCC_0447     FALSE 0.119 762.000 0.000 NA   NA
 3543718 3543719 NMCC_0447 NMCC_0448   hecB FALSE 0.178 399.000 0.000 NA   NA
 3543719 3543720 NMCC_0448 NMCC_0449 hecB   TRUE 0.482 110.000 0.000 NA   NA
 3543720 3543721 NMCC_0449 NMCC_0450     TRUE 0.899 7.000 0.000 NA   NA
 3543721 3543722 NMCC_0450 NMCC_0451     TRUE 0.587 42.000 0.000 NA   NA
 3543722 3543723 NMCC_0451 NMCC_0452     TRUE 0.890 9.000 0.000 NA   NA
 3543723 3543724 NMCC_0452 NMCC_0453     FALSE 0.238 278.000 0.000 NA   NA
 3543724 3543725 NMCC_0453 NMCC_0454     TRUE 0.633 35.000 0.000 NA   NA
 3543725 3543726 NMCC_0454 NMCC_0455     TRUE 0.890 9.000 0.000 NA   NA
 3543726 3543727 NMCC_0455 NMCC_0456     TRUE 0.619 37.000 0.000 NA   NA
 3543727 3543728 NMCC_0456 NMCC_0457     FALSE 0.433 123.000 0.000 NA   NA
 3543728 3543729 NMCC_0457 NMCC_0458     FALSE 0.359 178.000 0.000 NA   NA
 3543729 3543730 NMCC_0458 NMCC_0459     FALSE 0.116 799.000 0.000 NA   NA
 3543730 3543731 NMCC_0459 NMCC_0460     FALSE 0.233 283.000 0.000 NA   NA
 3543733 3543734 NMCC_0462 NMCC_0463     TRUE 0.713 28.000 0.000 NA   NA
 3543734 3543735 NMCC_0463 NMCC_0464     TRUE 0.899 7.000 0.000 NA   NA
 3543735 3543736 NMCC_0464 NMCC_0465     TRUE 0.482 110.000 0.000 NA   NA
 3543736 3543737 NMCC_0465 NMCC_0466     TRUE 0.879 -3.000 0.000 NA   NA
 3543738 3543739 NMCC_0467 NMCC_0468     TRUE 0.525 81.000 0.000 NA   NA
 3543739 3543740 NMCC_0468 NMCC_0470     FALSE 0.326 57.000 0.000 1.000 N NA
 3543742 3543743 NMCC_0471 NMCC_0472   nth FALSE 0.136 138.000 0.002 1.000 N NA
 3543743 3543744 NMCC_0472 NMCC_0473 nth   TRUE 0.904 4.000 0.000 NA   NA
 3543745 3543746 NMCC_0474 NMCC_0475   gluP TRUE 0.525 83.000 0.000 NA   NA
 3543746 3543747 NMCC_0475 NMCC_0476 gluP   FALSE 0.276 319.000 0.000 0.060 N NA
 3543748 3543749 NMCC_0477 NMCC_0479     TRUE 0.980 2.000 0.150 NA   NA
 3543750 3543751 NMCC_0478 NMCC_0480 hemC   TRUE 0.626 36.000 0.000 NA   NA
 3543752 3543753 NMCC_0481 NMCC_0482 aspC   TRUE 0.525 82.000 0.000 NA   NA
 3543755 3543756 NMCC_0484 NMCC_0485 lctP   FALSE 0.237 269.000 0.000 1.000   NA
 3543758 3543759 NMCC_0487 NMCC_0488   adhP TRUE 0.899 7.000 0.000 NA   NA
 3543759 3543760 NMCC_0488 NMCC_0489 adhP pilV1 FALSE 0.233 283.000 0.000 NA   NA
 3543761 3543762 NMCC_0490 NMCC_0491   ybjZ TRUE 0.940 66.000 0.258 0.074 N NA
 3543765 3543766 NMCC_0494 NMCC_0495     TRUE 0.890 9.000 0.000 NA   NA
 3543766 3543767 NMCC_0495 NMCC_0496     TRUE 0.731 243.000 0.000 0.018 Y NA
 3543767 3543768 NMCC_0496 NMCC_0497     TRUE 0.728 245.000 0.000 0.018 Y NA
 3543768 3543769 NMCC_0497 NMCC_0498     TRUE 0.500 64.000 0.000 1.000   NA
 3543771 3543772 NMCC_0500 NMCC_0501 dnaK   FALSE 0.319 208.000 0.000 NA   NA
 3543773 3543774 NMCC_0502 NMCC_0503     TRUE 0.773 -21.000 0.000 NA   NA
 3543774 3543775 NMCC_0503 NMCC_0504     FALSE 0.373 169.000 0.000 NA   NA
 3543775 3543776 NMCC_0504 NMCC_0505   ubiB TRUE 0.723 -37.000 0.000 NA   NA
 3543779 3543780 NMCC_0508 NMCC_0509   apbE TRUE 0.940 -19.000 0.113 NA   NA
 3543780 3543781 NMCC_0509 NMCC_0510 apbE nqrF TRUE 0.913 272.000 0.519 1.000 N NA
 3543781 3543782 NMCC_0510 NMCC_0511 nqrF nqrE TRUE 0.999 14.000 0.551 0.004 Y NA
 3543782 3543783 NMCC_0511 NMCC_0512 nqrE nqrD TRUE 0.997 4.000 0.188 0.004 Y NA
 3543783 3543784 NMCC_0512 NMCC_0513 nqrD nqrC TRUE 0.999 0.000 0.312 0.004 Y NA
 3543784 3543785 NMCC_0513 NMCC_0514 nqrC nqrB TRUE 0.999 -7.000 0.603 0.004 Y NA
 3543785 3543786 NMCC_0514 NMCC_0515 nqrB nqrA TRUE 1.000 3.000 0.854 0.004 Y NA
 3543786 3543787 NMCC_0515 NMCC_0516 nqrA   FALSE 0.066 563.000 0.000 1.000 N NA
 3543787 3543788 NMCC_0516 NMCC_0517     FALSE 0.194 361.000 0.000 NA   NA
 3543788 3543789 NMCC_0517 NMCC_0518     TRUE 0.879 -3.000 0.000 NA   NA
 3543789 3543790 NMCC_0518 NMCC_0519     TRUE 0.519 56.000 0.000 NA   NA
 3543791 3543792 NMCC_0520 NMCC_0521 gcvT gcvH TRUE 0.983 162.000 0.317 0.002 Y NA
 3543792 3543793 NMCC_0521 NMCC_0522 gcvH hemA FALSE 0.219 152.000 0.000 1.000 N NA
 3543793 3543794 NMCC_0522 NMCC_0523 hemA   FALSE 0.137 516.000 0.000 1.000   NA
 3543794 3543795 NMCC_0523 NMCC_0524   nosD TRUE 0.530 54.000 0.000 NA   NA
 3543795 3543796 NMCC_0524 NMCC_0525 nosD nosF TRUE 0.515 58.000 0.000 NA   NA
 3543796 3543797 NMCC_0525 NMCC_0526 nosF nosL FALSE 0.112 340.000 0.000 NA N NA
 3543798 3543799 NMCC_0527 NMCC_0528     FALSE 0.388 130.000 0.000 1.000   NA
 3543799 3543800 NMCC_0528 NMCC_0529     FALSE 0.095 1613.000 0.000 NA   NA
 3543801 3543802 NMCC_0530 NMCC_0531   frpA1 TRUE 0.814 17.000 0.000 NA   NA
 3543803 3543804 NMCC_0532 NMCC_0533 mntC   TRUE 0.985 77.000 0.400 1.000 Y NA
 3543804 3543805 NMCC_0533 NMCC_0534     TRUE 0.976 183.000 0.465 1.000 Y NA
 3543805 3543806 NMCC_0534 NMCC_0535   rplS FALSE 0.326 57.000 0.000 1.000 N NA
 3543806 3543807 NMCC_0535 NMCC_0536 rplS trmD TRUE 0.998 16.000 0.567 1.000 Y NA
 3543807 3543808 NMCC_0536 NMCC_0537 trmD rimM TRUE 0.999 0.000 0.672 1.000 Y NA
 3543808 3543809 NMCC_0537 NMCC_0538 rimM rpsP TRUE 0.998 16.000 0.342 0.027 Y NA
 3543809 3543810 NMCC_0538 NMCC_0539 rpsP   FALSE 0.378 45.000 0.000 1.000 N NA
 3543810 3543811 NMCC_0539 NMCC_0540     FALSE 0.274 118.000 0.000 1.000 N NA
 3543811 3543812 NMCC_0540 NMCC_0541     TRUE 0.970 14.000 0.054 1.000 Y NA
 3543812 3543813 NMCC_0541 NMCC_0542     FALSE 0.205 190.000 0.000 NA N NA
 3543813 3543814 NMCC_0542 NMCC_0543     TRUE 0.818 -10.000 0.000 NA   NA
 3543814 3543815 NMCC_0543 NMCC_0544     TRUE 0.890 9.000 0.000 NA   NA
 3543815 3543816 NMCC_0544 NMCC_0545   tatC FALSE 0.345 92.000 0.000 NA N NA
 3543816 3543817 NMCC_0545 NMCC_0546 tatC tatB TRUE 0.944 14.000 0.000 NA Y NA
 3543817 3543818 NMCC_0546 NMCC_0547 tatB tatA TRUE 0.986 4.000 0.000 0.009 Y NA
 3543818 3543819 NMCC_0547 NMCC_0548 tatA   TRUE 0.705 47.000 0.080 1.000 N NA
 3543819 3543820 NMCC_0548 NMCC_0549   hisE TRUE 0.659 72.000 0.079 1.000 N NA
 3543820 3543821 NMCC_0549 NMCC_0550 hisE   TRUE 0.763 78.000 0.000 1.000 Y NA
 3543821 3543822 NMCC_0550 NMCC_0551     FALSE 0.106 363.000 0.000 NA N NA
 3543823 3543824 NMCC_0552 NMCC_0553   secD TRUE 0.780 212.000 0.083 NA Y NA
 3543824 3543825 NMCC_0553 NMCC_0554 secD secF TRUE 0.999 4.000 0.332 0.001 Y NA
 3543825 3543826 NMCC_0554 NMCC_0555 secF   TRUE 0.895 8.000 0.000 NA   NA
 3543826 3543827 NMCC_0555 NMCC_0556   rpsO TRUE 0.605 39.000 0.000 NA   NA
 3543827 3543828 NMCC_0556 NMCC_0557 rpsO potA1 FALSE 0.154 234.000 0.000 1.000 N NA
 3543828 3543829 NMCC_0557 NMCC_0558 potA1 potB TRUE 0.824 16.000 0.000 NA   NA
 3543829 3543830 NMCC_0558 NMCC_0559 potB potC TRUE 0.896 0.000 0.000 NA   NA
 3543830 3543831 NMCC_0559 NMCC_0560 potC   TRUE 0.681 126.000 0.000 1.000 Y NA
 3543834 3543835 NMCC_0563 NMCC_0564     TRUE 0.530 195.000 0.000 0.070   NA
 3543835 3543836 NMCC_0564 NMCC_0565   rho FALSE 0.114 306.000 0.000 1.000 N NA
 3543836 3543837 NMCC_0565 NMCC_0566 rho ppsA FALSE 0.163 220.000 0.000 1.000 N NA
 3543839 3543840 NMCC_0568 NMCC_0569 pgp   TRUE 0.589 39.000 0.000 1.000   NA
 3543841 3543842 NMCC_0570 NMCC_0571 lolA potD2 FALSE 0.401 252.000 0.000 0.009 N NA
 3543842 3543843 NMCC_0571 NMCC_0572 potD2 pglE FALSE 0.146 513.000 0.000 NA   NA
 3543843 3543844 NMCC_0572 NMCC_0573 pglE   TRUE 0.591 41.000 0.000 NA   NA
 3543845 3543846 NMCC_0574 NMCC_0575 prfC hisI FALSE 0.233 131.000 0.000 1.000 N NA
 3543846 3543847 NMCC_0575 NMCC_0576 hisI hisF TRUE 0.887 76.000 0.006 0.006 Y NA
 3543847 3543848 NMCC_0576 NMCC_0577 hisF hisA TRUE 0.977 13.000 0.006 0.006 Y NA
 3543848 3543849 NMCC_0577 NMCC_0578 hisA hisH TRUE 0.979 33.000 0.120 0.006 Y NA
 3543849 3543850 NMCC_0578 NMCC_0579 hisH   FALSE 0.233 131.000 0.000 1.000 N NA
 3543850 3543851 NMCC_0579 NMCC_0580   fbpC FALSE 0.342 53.000 0.000 1.000 N NA
 3543851 3543852 NMCC_0580 NMCC_0581 fbpC fbpB TRUE 0.900 21.000 0.037 0.027 N NA
 3543852 3543853 NMCC_0581 NMCC_0582 fbpB fbpA TRUE 0.996 50.000 0.529 0.027 Y NA
 3543853 3543854 NMCC_0582 NMCC_0583 fbpA   FALSE 0.267 251.000 0.000 NA   NA
 3543854 3543855 NMCC_0583 NMCC_0584     TRUE 0.856 -6.000 0.000 NA   NA
 3543855 3543856 NMCC_0584 NMCC_0585   argH TRUE 0.899 7.000 0.000 NA   NA
 3543856 3543857 NMCC_0585 NMCC_0586 argH galU TRUE 0.634 19.000 0.000 1.000 N NA
 3543857 3543858 NMCC_0586 NMCC_0587 galU   TRUE 0.529 28.000 0.000 1.000 N NA
 3543858 3543859 NMCC_0587 NMCC_0588     TRUE 0.846 -7.000 0.000 NA   NA
 3543859 3543860 NMCC_0588 NMCC_0589   ppa TRUE 0.485 108.000 0.000 NA   NA
 3543860 3543861 NMCC_0589 NMCC_0590 ppa ntpA FALSE 0.307 101.000 0.000 1.000 N NA
 3543862 3543863 NMCC_0591 NMCC_0592     FALSE 0.381 158.000 0.000 NA   NA
 3543863 3543864 NMCC_0592 NMCC_0593     TRUE 0.903 3.000 0.000 NA   NA
 3543864 3543865 NMCC_0593 NMCC_0594     FALSE 0.185 383.000 0.000 NA   NA
 3543865 3543866 NMCC_0594 NMCC_0595     FALSE 0.140 541.000 0.000 NA   NA
 3543866 3543867 NMCC_0595 NMCC_0596     TRUE 0.998 27.000 1.000 NA   NA
 3543867 3543868 NMCC_0596 NMCC_0597     FALSE 0.381 158.000 0.000 NA   NA
 3543868 3543869 NMCC_0597 NMCC_0598     TRUE 0.501 99.000 0.000 NA   NA
 3543869 3543870 NMCC_0598 NMCC_0599     TRUE 0.903 3.000 0.000 NA   NA
 3543870 3543871 NMCC_0599 NMCC_0600     TRUE 0.683 -82.000 0.000 NA   NA
 3543871 3543872 NMCC_0600 NMCC_0601   mafA2 FALSE 0.433 123.000 0.000 NA   NA
 3543872 3543873 NMCC_0601 NMCC_0602 mafA2 mafB2 TRUE 0.904 4.000 0.000 NA   NA
 3543873 3543874 NMCC_0602 NMCC_0603 mafB2   TRUE 0.835 15.000 0.000 NA   NA
 3543874 3543875 NMCC_0603 NMCC_0604     FALSE 0.183 389.000 0.000 NA   NA
 3543875 3543876 NMCC_0604 NMCC_0605     TRUE 0.879 -3.000 0.000 NA   NA
 3543876 3543877 NMCC_0605 NMCC_0606     FALSE 0.375 167.000 0.000 NA   NA
 3543877 3543878 NMCC_0606 NMCC_0607     TRUE 0.903 3.000 0.000 NA   NA
 3543878 3543879 NMCC_0607 NMCC_0608     TRUE 0.514 59.000 0.000 NA   NA
 3543879 3543880 NMCC_0608 NMCC_0609     FALSE 0.415 127.000 0.000 NA   NA
 3543880 3543881 NMCC_0609 NMCC_0610     FALSE 0.189 375.000 0.000 NA   NA
 3543881 3543882 NMCC_0610 NMCC_0611     TRUE 0.729 26.000 0.000 NA   NA
 3543882 3543883 NMCC_0611 NMCC_0612     FALSE 0.167 417.000 0.000 NA   NA
 3543883 3543884 NMCC_0612 NMCC_0613     FALSE 0.355 182.000 0.000 NA   NA
 3543885 3543886 NMCC_0614 NMCC_0615 trkH apaH TRUE 0.696 15.000 0.000 1.000 N NA
 3543886 3543887 NMCC_0615 NMCC_0616 apaH   TRUE 0.672 18.000 0.000 NA N NA
 3543887 3543888 NMCC_0616 NMCC_0617   nspA FALSE 0.243 136.000 0.000 NA N NA
 3543888 3543889 NMCC_0617 NMCC_0618 nspA   FALSE 0.064 585.000 0.000 1.000 N NA
 3543889 3543890 NMCC_0618 NMCC_0619   ligA FALSE 0.465 33.000 0.000 1.000 N NA
 3543890 3543891 NMCC_0619 NMCC_0620 ligA   FALSE 0.344 148.000 0.005 1.000   NA
 3543891 3543892 NMCC_0620 NMCC_0621   ampD FALSE 0.334 185.000 0.000 1.000   NA
 3543893 3543894 NMCC_0622 NMCC_0623   tmk TRUE 0.852 159.000 0.209 NA   NA
 3543894 3543895 NMCC_0623 NMCC_0624 tmk maeA FALSE 0.160 222.000 0.000 1.000 N NA
 3543895 3543896 NMCC_0624 NMCC_0625 maeA   TRUE 0.515 58.000 0.000 NA   NA
 3543896 3543897 NMCC_0625 NMCC_0626   lpxK FALSE 0.337 194.000 0.000 NA   NA
 3543897 3543898 NMCC_0626 NMCC_0627 lpxK   FALSE 0.299 221.000 0.000 NA   NA
 3543898 3543899 NMCC_0627 NMCC_0628     TRUE 0.517 69.000 0.000 NA   NA
 3543899 3543900 NMCC_0628 NMCC_0629   kdsB TRUE 0.990 -3.000 0.265 NA   NA
 3543900 3543901 NMCC_0629 NMCC_0630 kdsB   TRUE 0.752 23.000 0.000 NA   NA
 3543901 3543902 NMCC_0630 NMCC_0631     TRUE 0.767 21.000 0.000 NA   NA
 3543902 3543903 NMCC_0631 NMCC_0632     TRUE 0.764 -22.000 0.000 NA   NA
 3543903 3543904 NMCC_0632 NMCC_0633     TRUE 0.515 63.000 0.000 NA   NA
 3543904 3543905 NMCC_0633 NMCC_0634   trpA FALSE 0.152 474.000 0.000 NA   NA
 3543905 3543906 NMCC_0634 NMCC_0635 trpA accD TRUE 0.920 37.000 0.232 1.000 N NA
 3543908 3543909 NMCC_0637 NMCC_0638     TRUE 0.854 13.000 0.000 NA   NA
 3543909 3543910 NMCC_0638 NMCC_0639   pyrC TRUE 0.513 60.000 0.000 NA   NA
 3543911 3543912 NMCC_0640 NMCC_0641 nusB ribE TRUE 0.943 78.000 0.347 1.000 N NA
 3543912 3543913 NMCC_0641 NMCC_0643 ribE   TRUE 0.563 47.000 0.000 NA   NA
 3543914 3543915 NMCC_0642 NMCC_0644 rnc era TRUE 0.898 35.000 0.058 0.033   NA
 3543916 3543917 NMCC_0645 NMCC_0646   trpF FALSE 0.128 608.000 0.000 NA   NA
 3543917 3543918 NMCC_0646 NMCC_0647 trpF greB FALSE 0.323 59.000 0.000 1.000 N NA
 3543918 3543919 NMCC_0647 NMCC_0648 greB purF FALSE 0.310 100.000 0.000 1.000 N NA
 3543919 3543920 NMCC_0648 NMCC_0649 purF   FALSE 0.244 274.000 0.000 NA   NA
 3543920 3543921 NMCC_0649 NMCC_0650     TRUE 0.879 -3.000 0.000 NA   NA
 3543921 3543922 NMCC_0650 NMCC_0651   tpc TRUE 0.846 -7.000 0.000 NA   NA
 3543922 3543923 NMCC_0651 NMCC_0652 tpc folC TRUE 0.854 13.000 0.000 NA   NA
 3543923 3543924 NMCC_0652 NMCC_0653 folC folI TRUE 0.524 86.000 0.000 NA   NA
 3543924 3543925 NMCC_0653 NMCC_0654 folI   TRUE 0.903 5.000 0.000 NA   NA
 3543925 3543926 NMCC_0654 NMCC_0655     TRUE 0.515 58.000 0.000 NA   NA
 3543926 3543927 NMCC_0655 NMCC_0656   ksgA FALSE 0.121 152.000 0.002 1.000 N NA
 3543928 3543929 NMCC_0657 NMCC_0658   trpB FALSE 0.355 83.000 0.000 NA N NA
 3543934 3543935 NMCC_0663 NMCC_0664     TRUE 0.521 78.000 0.000 NA   NA
 3543936 3543937 NMCC_0665 NMCC_0666     TRUE 0.540 52.000 0.000 NA   NA
 3543937 3543938 NMCC_0666 NMCC_0667   holA TRUE 0.980 2.000 0.199 NA N NA
 3543938 3543939 NMCC_0667 NMCC_0668 holA   FALSE 0.445 121.000 0.000 NA   NA
 3543939 3543940 NMCC_0668 NMCC_0669     TRUE 0.517 76.000 0.000 NA   NA
 3543941 3543942 NMCC_0670 NMCC_0671   rpoH FALSE 0.151 484.000 0.000 NA   NA
 3543942 3543943 NMCC_0671 NMCC_0672 rpoH lnt FALSE 0.131 265.000 0.000 1.000 N NA
 3543943 3543944 NMCC_0672 NMCC_0673 lnt   TRUE 0.904 4.000 0.000 NA   NA
 3543945 3543946 NMCC_0674 NMCC_0675     FALSE 0.140 545.000 0.000 NA   NA
 3543947 3543948 NMCC_0676 NMCC_0677   hemH FALSE 0.218 155.000 0.000 1.000 N NA
 3543948 3543949 NMCC_0677 NMCC_0678 hemH tgt TRUE 0.772 10.000 0.000 1.000 N NA
 3543950 3543951 NMCC_0679 NMCC_0680   thrS TRUE 0.535 53.000 0.000 NA   NA
 3543951 3543952 NMCC_0680 NMCC_0681 thrS infC TRUE 0.915 129.000 0.186 1.000 Y NA
 3543952 3543953 NMCC_0681 NMCC_0682 infC rpmI TRUE 0.995 51.000 0.652 1.000 Y NA
 3543953 3543954 NMCC_0682 NMCC_0683 rpmI rplT TRUE 1.000 13.000 0.928 0.026 Y NA
 3543954 3543955 NMCC_0683 NMCC_0684 rplT pheS TRUE 0.854 280.000 0.202 1.000 Y NA
 3543955 3543956 NMCC_0684 NMCC_0685 pheS   FALSE 0.360 177.000 0.000 NA   NA
 3543956 3543957 NMCC_0685 NMCC_0686     TRUE 0.997 7.000 0.500 NA   NA
 3543957 3543958 NMCC_0686 NMCC_0687   pheT TRUE 0.626 36.000 0.000 NA   NA
 3543958 3543959 NMCC_0687 NMCC_0688 pheT himA TRUE 0.867 74.000 0.208 1.000 N NA
 3543959 3543960 NMCC_0688 NMCC_0689 himA   TRUE 0.798 -16.000 0.000 NA   NA
 3543960 3543961 NMCC_0689 NMCC_0690     FALSE 0.206 330.000 0.000 NA   NA
 3543961 3543962 NMCC_0690 NMCC_0691     FALSE 0.257 260.000 0.000 NA   NA
 3543962 3543963 NMCC_0691 NMCC_0692   bioA TRUE 0.515 63.000 0.000 NA   NA
 3543963 3543964 NMCC_0692 NMCC_0693 bioA bioD TRUE 0.991 -3.000 0.051 0.004 Y NA
 3543964 3543965 NMCC_0693 NMCC_0694 bioD   TRUE 0.895 -33.000 0.000 NA Y NA
 3543965 3543966 NMCC_0694 NMCC_0695   ubiA TRUE 0.983 30.000 0.248 NA Y NA
 3543966 3543967 NMCC_0695 NMCC_0696 ubiA ptsN FALSE 0.194 185.000 0.000 1.000 N NA
 3543967 3543968 NMCC_0696 NMCC_0697 ptsN   TRUE 0.993 4.000 0.177 1.000 Y NA
 3543968 3543969 NMCC_0697 NMCC_0698     TRUE 0.986 5.000 0.194 NA   NA
 3543969 3543970 NMCC_0698 NMCC_0699     TRUE 0.525 81.000 0.000 NA   NA
 3543970 3543971 NMCC_0699 NMCC_0700   scpB TRUE 0.495 101.000 0.000 NA   NA
 3543971 3543972 NMCC_0700 NMCC_0701 scpB recN FALSE 0.211 184.000 0.000 NA N NA
 3543972 3543973 NMCC_0701 NMCC_0702 recN   TRUE 0.482 110.000 0.000 NA   NA
 3543973 3543974 NMCC_0702 NMCC_0703     TRUE 0.805 18.000 0.000 NA   NA
 3543974 3543975 NMCC_0703 NMCC_0704     FALSE 0.127 624.000 0.000 NA   NA
 3543977 3543978 NMCC_0706 NMCC_0707   ubiE TRUE 0.803 43.000 0.074 NA   NA
 3543978 3543979 NMCC_0707 NMCC_0708 ubiE   FALSE 0.301 220.000 0.000 NA   NA
 3543980 3543981 NMCC_0709 NMCC_0710 folK   TRUE 0.882 10.000 0.000 NA   NA
 3543981 3543982 NMCC_0710 NMCC_0711     TRUE 0.530 54.000 0.000 NA   NA
 3543982 3543983 NMCC_0711 NMCC_0712   hfq TRUE 0.509 85.000 0.000 1.000   NA
 3543983 3543984 NMCC_0712 NMCC_0713 hfq   TRUE 0.743 -24.000 0.000 1.000   NA
 3543985 3543986 NMCC_0714 NMCC_0715 bcp xerD FALSE 0.235 52.000 0.002 1.000 N NA
 3543986 3543987 NMCC_0715 NMCC_0716 xerD   FALSE 0.224 172.000 0.000 NA N NA
 3543987 3543988 NMCC_0716 NMCC_0717     FALSE 0.376 166.000 0.000 NA   NA
 3543988 3543989 NMCC_0717 NMCC_0718     FALSE 0.398 133.000 0.000 NA   NA
 3543990 3543991 NMCC_0719 NMCC_0720   rfbD FALSE 0.380 162.000 0.000 NA   NA
 3543992 3543993 NMCC_0721 NMCC_0722 purC pnp FALSE 0.152 237.000 0.000 1.000 N NA
 3543994 3543995 NMCC_0723 NMCC_0724     TRUE 0.845 14.000 0.000 NA   NA
 3543996 3543997 NMCC_0725 NMCC_0726 dapF   TRUE 0.493 102.000 0.000 NA   NA
 3543997 3543998 NMCC_0726 NMCC_0727   cysK FALSE 0.337 194.000 0.000 NA   NA
 3543998 3543999 NMCC_0727 NMCC_0728 cysK   FALSE 0.143 484.000 0.000 1.000   NA
 3544000 3544001 NMCC_0729 NMCC_0730 lepB lepA TRUE 0.748 143.000 0.187 1.000 N NA
 3544001 3544002 NMCC_0730 NMCC_0731 lepA pfs FALSE 0.221 143.000 0.000 1.000 N NA
 3544003 3544004 NMCC_0732 NMCC_0733 pilT2 holB FALSE 0.448 34.000 0.000 1.000 N NA
 3544004 3544005 NMCC_0733 NMCC_0734 holB pilZ TRUE 0.994 4.000 0.382 NA N NA
 3544005 3544006 NMCC_0734 NMCC_0735 pilZ   TRUE 0.955 5.000 0.089 NA N NA
 3544006 3544007 NMCC_0735 NMCC_0736   grlA FALSE 0.111 342.000 0.000 NA N NA
 3544007 3544008 NMCC_0736 NMCC_0737 grlA   TRUE 0.896 0.000 0.000 NA   NA
 3544008 3544009 NMCC_0737 NMCC_0738   upp TRUE 0.818 -10.000 0.000 NA   NA
 3544009 3544010 NMCC_0738 NMCC_0739 upp   TRUE 0.752 23.000 0.000 NA   NA
 3544010 3544011 NMCC_0739 NMCC_0740     FALSE 0.267 251.000 0.000 NA   NA
 3544011 3544012 NMCC_0740 NMCC_0741   hemD TRUE 0.605 39.000 0.000 NA   NA
 3544012 3544013 NMCC_0741 NMCC_0742 hemD hemX TRUE 0.999 15.000 0.600 1.000 Y NA
 3544013 3544014 NMCC_0742 NMCC_0743 hemX hemY TRUE 0.999 -3.000 0.765 1.000 Y NA
 3544014 3544015 NMCC_0743 NMCC_0744 hemY hemE TRUE 0.759 75.000 0.000 1.000 Y NA
 3544016 3544017 NMCC_0745 NMCC_0746     TRUE 0.961 1.000 0.070 NA   NA
 3544017 3544018 NMCC_0746 NMCC_0747     TRUE 0.494 244.000 0.062 NA   NA
 3544020 3544021 NMCC_0749 NMCC_0750     FALSE 0.423 125.000 0.000 NA   NA
 3544021 3544022 NMCC_0750 NMCC_0751   recB FALSE 0.432 39.000 0.000 NA N NA
 3544022 3544023 NMCC_0751 NMCC_0752 recB   FALSE 0.353 80.000 0.000 NA N NA
 3544024 3544025 NMCC_0753 NMCC_0754     TRUE 0.999 -10.000 0.594 0.026 Y NA
 3544025 3544026 NMCC_0754 NMCC_0755     TRUE 0.998 10.000 0.481 1.000 Y NA
 3544027 3544028 NMCC_0756 NMCC_0757 pgm ppiB FALSE 0.216 163.000 0.000 1.000 N NA
 3544028 3544029 NMCC_0757 NMCC_0758 ppiB   FALSE 0.271 119.000 0.000 1.000 N NA
 3544029 3544030 NMCC_0758 NMCC_0759   pth FALSE 0.072 509.000 0.000 1.000 N NA
 3544030 3544031 NMCC_0759 NMCC_0760 pth   TRUE 0.535 53.000 0.000 NA   NA
 3544031 3544032 NMCC_0760 NMCC_0761     TRUE 0.947 -7.000 0.086 NA   NA
 3544032 3544033 NMCC_0761 NMCC_0762   ftsH FALSE 0.185 212.000 0.000 NA N NA
 3544033 3544034 NMCC_0762 NMCC_0763 ftsH ftsJ TRUE 0.719 64.000 0.095 NA N NA
 3544035 3544036 NMCC_0764 NMCC_0765   hemB FALSE 0.110 345.000 0.000 NA N NA
 3544038 3544039 NMCC_0766 NMCC_0768     TRUE 0.598 40.000 0.000 NA   NA
 3544039 3544040 NMCC_0768 NMCC_0769     TRUE 0.835 15.000 0.000 NA   NA
 3544041 3544042 NMCC_0770 NMCC_0771     TRUE 0.557 25.000 0.000 1.000 N NA
 3544042 3544043 NMCC_0771 NMCC_0772     TRUE 0.779 20.000 0.000 NA   NA
 3544043 3544044 NMCC_0772 NMCC_0773     TRUE 0.545 51.000 0.000 NA   NA
 3544044 3544045 NMCC_0773 NMCC_0774     FALSE 0.331 55.000 0.000 1.000 N NA
 3544045 3544046 NMCC_0774 NMCC_0775   murB TRUE 0.740 12.000 0.000 1.000 N NA
 3544049 3544050 NMCC_0778 NMCC_0779 hisS1 purA TRUE 0.784 104.000 0.161 1.000 N NA
 3544050 3544051 NMCC_0779 NMCC_0780 purA   FALSE 0.094 1929.000 0.000 NA   NA
 3544051 3544052 NMCC_0780 NMCC_0781     TRUE 0.735 -31.000 0.000 NA   NA
 3544052 3544053 NMCC_0781 NMCC_0782     TRUE 0.578 44.000 0.000 NA   NA
 3544055 3544056 NMCC_0784 NMCC_0785 adk pyrF FALSE 0.332 526.000 0.000 1.000 Y NA
 3544056 3544057 NMCC_0785 NMCC_0786 pyrF rfaE FALSE 0.272 56.000 0.005 1.000 N NA
 3544057 3544058 NMCC_0786 NMCC_0787 rfaE nmgII FALSE 0.423 37.000 0.000 1.000 N NA
 3544058 3544059 NMCC_0787 NMCC_0788 nmgII nmgI TRUE 0.939 2.000 0.065 NA N NA
 3544059 3544060 NMCC_0788 NMCC_0789 nmgI rfaD FALSE 0.418 41.000 0.000 NA N NA
 3544060 3544061 NMCC_0789 NMCC_0790 rfaD hsdM TRUE 0.514 73.000 0.000 NA   NA
 3544061 3544062 NMCC_0790 NMCC_0791 hsdM   TRUE 0.522 87.000 0.000 NA   NA
 3544062 3544063 NMCC_0791 NMCC_0792   hsdS FALSE 0.376 166.000 0.000 NA   NA
 3544063 3544064 NMCC_0792 NMCC_0793 hsdS hsdR FALSE 0.348 185.000 0.000 NA   NA
 3544065 3544066 NMCC_0794 NMCC_0795 clpA   TRUE 0.998 2.000 0.596 NA   NA
 3544069 3544070 NMCC_0798 NMCC_0799     TRUE 0.563 47.000 0.000 NA   NA
 3544070 3544071 NMCC_0799 NMCC_0800   recJ TRUE 0.517 69.000 0.000 NA   NA
 3544071 3544072 NMCC_0800 NMCC_0801 recJ   TRUE 0.522 249.000 0.000 1.000 Y NA
 3544072 3544073 NMCC_0801 NMCC_0802   pcnB FALSE 0.155 230.000 0.000 1.000 N NA
 3544073 3544074 NMCC_0802 NMCC_0803 pcnB   FALSE 0.366 173.000 0.000 NA   NA
 3544075 3544076 NMCC_0804 NMCC_0805     FALSE 0.224 139.000 0.000 1.000 N NA
 3544078 3544079 NMCC_0807 NMCC_0808     TRUE 0.518 66.000 0.000 NA   NA
 3544079 3544080 NMCC_0808 NMCC_0809   rdgC TRUE 0.540 52.000 0.000 NA   NA
 3544080 3544081 NMCC_0809 NMCC_0810 rdgC engA TRUE 0.663 31.000 0.000 1.000   NA
 3544081 3544082 NMCC_0810 NMCC_0811 engA   TRUE 0.905 1.000 0.009 1.000   NA
 3544082 3544083 NMCC_0811 NMCC_0812   hisS2 TRUE 0.985 13.000 0.259 1.000   NA
 3544083 3544084 NMCC_0812 NMCC_0813 hisS2   TRUE 0.694 94.000 0.000 0.100   NA
 3544084 3544085 NMCC_0813 NMCC_0814     TRUE 0.514 61.000 0.000 NA   NA
 3544085 3544086 NMCC_0814 NMCC_0815     TRUE 0.658 33.000 0.000 NA   NA
 3544086 3544087 NMCC_0815 NMCC_0816     TRUE 0.517 57.000 0.000 NA   NA
 3544087 3544088 NMCC_0816 NMCC_0817     TRUE 0.904 4.000 0.000 NA   NA
 3544088 3544089 NMCC_0817 NMCC_0818     FALSE 0.468 115.000 0.000 NA   NA
 3544089 3544090 NMCC_0818 NMCC_0819     TRUE 0.515 58.000 0.000 NA   NA
 3544090 3544091 NMCC_0819 NMCC_0820     TRUE 0.793 -18.000 0.000 NA   NA
 3544091 3544092 NMCC_0820 NMCC_0821     FALSE 0.379 163.000 0.000 NA   NA
 3544092 3544093 NMCC_0821 NMCC_0822     TRUE 0.517 69.000 0.000 NA   NA
 3544093 3544094 NMCC_0822 NMCC_0823     TRUE 0.952 43.000 0.286 NA   NA
 3544096 3544097 NMCC_0825 NMCC_0826     TRUE 0.507 55.000 0.000 1.000   NA
 3544098 3544099 NMCC_0827 NMCC_0828     TRUE 0.633 35.000 0.000 NA   NA
 3544099 3544100 NMCC_0828 NMCC_0829   panB FALSE 0.333 196.000 0.000 NA   NA
 3544100 3544101 NMCC_0829 NMCC_0830 panB panC TRUE 0.987 198.000 0.395 0.001 Y NA
 3544101 3544102 NMCC_0830 NMCC_0831 panC   FALSE 0.155 432.000 0.000 1.000   NA
 3544102 3544103 NMCC_0831 NMCC_0832   lolB TRUE 0.622 140.000 0.067 1.000   NA
 3544103 3544104 NMCC_0832 NMCC_0833 lolB   TRUE 0.965 10.000 0.157 1.000 N NA
 3544104 3544105 NMCC_0833 NMCC_0834     TRUE 0.895 8.000 0.000 NA   NA
 3544105 3544106 NMCC_0834 NMCC_0835     TRUE 0.854 13.000 0.000 NA   NA
 3544106 3544107 NMCC_0835 NMCC_0836     TRUE 0.890 9.000 0.000 NA   NA
 3544107 3544108 NMCC_0836 NMCC_0837   prsA FALSE 0.375 167.000 0.000 NA   NA
 3544108 3544109 NMCC_0837 NMCC_0838 prsA rplY TRUE 0.768 67.000 0.122 1.000 N NA
 3544112 3544113 NMCC_0841 NMCC_0842 cysA cysW TRUE 0.999 -3.000 0.587 1.000 Y NA
 3544113 3544114 NMCC_0842 NMCC_0843 cysW cysT TRUE 0.993 255.000 0.935 0.001 N NA
 3544115 3544116 NMCC_0844 NMCC_0845     FALSE 0.204 332.000 0.000 NA   NA
 3544118 3544119 NMCC_0847 NMCC_0848 dnaB fimT FALSE 0.143 264.000 0.000 NA N NA
 3544119 3544120 NMCC_0848 NMCC_0849 fimT pilV TRUE 0.958 -3.000 0.000 NA Y NA
 3544120 3544121 NMCC_0849 NMCC_0850 pilV pilW TRUE 0.958 -3.000 0.000 NA Y NA
 3544121 3544122 NMCC_0850 NMCC_0851 pilW pilX TRUE 0.914 -21.000 0.000 NA Y NA
 3544122 3544123 NMCC_0851 NMCC_0852 pilX   TRUE 0.966 5.000 0.000 NA Y NA
 3544123 3544124 NMCC_0852 NMCC_0853     FALSE 0.110 933.000 0.000 NA   NA
 3544124 3544125 NMCC_0853 NMCC_0854   dut FALSE 0.158 444.000 0.000 NA   NA
 3544125 3544126 NMCC_0854 NMCC_0855 dut   FALSE 0.331 79.000 0.000 1.000 N NA
 3544126 3544127 NMCC_0855 NMCC_0856     FALSE 0.256 262.000 0.000 NA   NA
 3544127 3544128 NMCC_0856 NMCC_0857     TRUE 0.525 83.000 0.000 NA   NA
 3544128 3544129 NMCC_0857 NMCC_0858     TRUE 0.521 78.000 0.000 NA   NA
 3544130 3544131 NMCC_0859 NMCC_0860     TRUE 0.500 64.000 0.000 1.000   NA
 3544131 3544132 NMCC_0860 NMCC_0861   icd FALSE 0.100 964.000 0.000 1.000   NA
 3544133 3544134 NMCC_0862 NMCC_0863   lst FALSE 0.371 170.000 0.000 NA   NA
 3544140 3544141 NMCC_0869 NMCC_0870   pip TRUE 0.846 -7.000 0.000 NA   NA
 3544142 3544143 NMCC_0871 NMCC_0872   dapA TRUE 0.851 78.000 0.041 NA Y NA
 3544145 3544146 NMCC_0874 NMCC_0875 rlmB   FALSE 0.472 114.000 0.000 NA   NA
 3544146 3544147 NMCC_0875 NMCC_0876     TRUE 0.903 5.000 0.000 NA   NA
 3544147 3544148 NMCC_0876 NMCC_0877   miaA TRUE 0.965 4.000 0.000 1.000 Y NA
 3544149 3544150 NMCC_0878 NMCC_0879     TRUE 0.854 13.000 0.000 NA   NA
 3544150 3544151 NMCC_0879 NMCC_0880   efp TRUE 0.805 43.000 0.074 NA   NA
 3544152 3544153 NMCC_0881 NMCC_0882     FALSE 0.458 117.000 0.000 NA   NA
 3544153 3544154 NMCC_0882 NMCC_0883   metX TRUE 0.997 -3.000 0.509 NA   NA
 3544154 3544155 NMCC_0883 NMCC_0884 metX rpmJ2 FALSE 0.147 457.000 0.000 1.000   NA
 3544155 3544156 NMCC_0884 NMCC_0885 rpmJ2 rpmE2 TRUE 0.983 0.000 0.083 0.025   NA
 3544157 3544158 NMCC_0886 NMCC_0887 metF metE TRUE 0.861 135.000 0.009 0.002 Y NA
 3544158 3544159 NMCC_0887 NMCC_0888 metE   TRUE 0.863 12.000 0.000 NA   NA
 3544159 3544160 NMCC_0888 NMCC_0889     TRUE 0.530 54.000 0.000 NA   NA
 3544160 3544161 NMCC_0889 NMCC_0890   lpdA2 TRUE 0.797 305.000 0.204 0.008 N NA
 3544161 3544162 NMCC_0890 NMCC_0891 lpdA2   TRUE 0.901 6.000 0.000 NA   NA
 3544162 3544163 NMCC_0891 NMCC_0892   sdhC TRUE 0.514 61.000 0.000 NA   NA
 3544163 3544164 NMCC_0892 NMCC_0893 sdhC sdhD TRUE 0.984 -6.000 0.010 0.001 Y NA
 3544164 3544165 NMCC_0893 NMCC_0894 sdhD sdhA TRUE 0.988 3.000 0.008 0.002 Y NA
 3544165 3544166 NMCC_0894 NMCC_0895 sdhA sdhB TRUE 0.997 120.000 0.604 0.002 Y NA
 3544166 3544167 NMCC_0895 NMCC_0896 sdhB   TRUE 0.981 4.000 0.151 NA   NA
 3544167 3544168 NMCC_0896 NMCC_0897   gltA TRUE 0.824 112.000 0.136 NA   NA
 3544168 3544169 NMCC_0897 NMCC_0898 gltA sucA TRUE 0.661 205.000 0.020 1.000 Y NA
 3544169 3544170 NMCC_0898 NMCC_0899 sucA sucB TRUE 0.995 100.000 0.667 1.000 Y NA
 3544170 3544171 NMCC_0899 NMCC_0900 sucB lpdA3 TRUE 0.856 365.000 0.253 1.000 Y NA
 3544171 3544172 NMCC_0900 NMCC_0901 lpdA3   TRUE 0.509 95.000 0.000 NA   NA
 3544172 3544173 NMCC_0901 NMCC_0902   sucC TRUE 0.514 72.000 0.000 NA   NA
 3544173 3544174 NMCC_0902 NMCC_0903 sucC sucD TRUE 1.000 11.000 0.806 0.001 Y NA
 3544175 3544176 NMCC_0904 NMCC_0905     FALSE 0.121 741.000 0.000 NA   NA
 3544176 3544177 NMCC_0905 NMCC_0906   uvrA FALSE 0.060 821.000 0.000 NA N NA
 3544180 3544181 NMCC_0909 NMCC_0910 trpG trpD TRUE 0.907 64.000 0.105 1.000 Y NA
 3544181 3544182 NMCC_0910 NMCC_0911 trpD   TRUE 0.764 -22.000 0.000 NA   NA
 3544184 3544185 NMCC_0913 NMCC_0914     TRUE 0.832 -9.000 0.000 NA   NA
 3544185 3544186 NMCC_0914 NMCC_0915     TRUE 0.996 5.000 0.400 NA   NA
 3544186 3544187 NMCC_0915 NMCC_0916     TRUE 0.895 8.000 0.000 NA   NA
 3544187 3544188 NMCC_0916 NMCC_0917     TRUE 0.899 7.000 0.000 NA   NA
 3544188 3544189 NMCC_0917 NMCC_0918     FALSE 0.411 128.000 0.000 NA   NA
 3544189 3544190 NMCC_0918 NMCC_0919     TRUE 0.785 -19.000 0.000 NA   NA
 3544190 3544191 NMCC_0919 NMCC_0920     FALSE 0.146 511.000 0.000 NA   NA
 3544192 3544193 NMCC_0921 NMCC_0922 pntB   TRUE 0.518 66.000 0.000 NA   NA
 3544193 3544194 NMCC_0922 NMCC_0923   pntA TRUE 0.904 4.000 0.000 NA   NA
 3544195 3544196 NMCC_0924 NMCC_0925 serB   FALSE 0.220 147.000 0.000 1.000 N NA
 3544196 3544197 NMCC_0925 NMCC_0926   purH FALSE 0.217 161.000 0.000 1.000 N NA
 3544197 3544198 NMCC_0926 NMCC_0927 purH   FALSE 0.063 597.000 0.000 1.000 N NA
 3544198 3544199 NMCC_0927 NMCC_0928     TRUE 0.902 2.000 0.000 NA   NA
 3544199 3544200 NMCC_0928 NMCC_0929     TRUE 0.764 -22.000 0.000 NA   NA
 3544200 3544201 NMCC_0929 NMCC_0930     FALSE 0.218 309.000 0.000 NA   NA
 3544201 3544202 NMCC_0930 NMCC_0931     FALSE 0.321 206.000 0.000 NA   NA
 3544202 3544203 NMCC_0931 NMCC_0932     TRUE 0.903 3.000 0.000 NA   NA
 3544203 3544204 NMCC_0932 NMCC_0933     TRUE 0.741 -28.000 0.000 NA   NA
 3544205 3544206 NMCC_0934 NMCC_0935     FALSE 0.230 133.000 0.000 1.000 N NA
 3544206 3544207 NMCC_0935 NMCC_0936     FALSE 0.046 1570.000 0.000 1.000 N NA
 3544207 3544208 NMCC_0936 NMCC_0937     FALSE 0.184 570.000 0.000 0.043 N NA
 3544208 3544209 NMCC_0937 NMCC_0938     TRUE 0.843 134.000 0.200 NA   NA
 3544209 3544210 NMCC_0938 NMCC_0939     TRUE 0.779 20.000 0.000 NA   NA
 3544210 3544211 NMCC_0939 NMCC_0940   dld FALSE 0.228 295.000 0.000 NA   NA
 3544212 3544213 NMCC_0941 NMCC_0942     TRUE 0.509 95.000 0.000 NA   NA
 3544213 3544214 NMCC_0942 NMCC_0943     TRUE 0.666 77.000 0.000 0.010 N NA
 3544217 3544218 NMCC_0946 NMCC_0947     TRUE 0.563 47.000 0.000 NA   NA
 3544218 3544219 NMCC_0947 NMCC_0948     TRUE 0.779 20.000 0.000 NA   NA
 3544219 3544220 NMCC_0948 NMCC_0949     TRUE 0.785 -19.000 0.000 NA   NA
 3544220 3544221 NMCC_0949 NMCC_0950     TRUE 0.573 45.000 0.000 NA   NA
 3544221 3544222 NMCC_0950 NMCC_0951     TRUE 0.863 12.000 0.000 NA   NA
 3544223 3544224 NMCC_0952 NMCC_0953     FALSE 0.183 389.000 0.000 NA   NA
 3544224 3544225 NMCC_0953 NMCC_0954     FALSE 0.109 944.000 0.000 NA   NA
 3544225 3544226 NMCC_0954 NMCC_0955     FALSE 0.478 112.000 0.000 NA   NA
 3544226 3544227 NMCC_0955 NMCC_0956     TRUE 0.824 16.000 0.000 NA   NA
 3544227 3544228 NMCC_0956 NMCC_0957     TRUE 0.879 -3.000 0.000 NA   NA
 3544228 3544229 NMCC_0957 NMCC_0958     TRUE 0.903 5.000 0.000 NA   NA
 3544230 3544231 NMCC_0959 NMCC_0960     TRUE 0.578 44.000 0.000 NA   NA
 3544231 3544232 NMCC_0960 NMCC_0961   sbp FALSE 0.177 401.000 0.000 NA   NA
 3544232 3544233 NMCC_0961 NMCC_0962 sbp   FALSE 0.472 106.000 0.000 1.000   NA
 3544233 3544234 NMCC_0962 NMCC_0963   purK TRUE 0.548 47.000 0.000 1.000   NA
 3544234 3544235 NMCC_0963 NMCC_0964 purK   TRUE 0.879 -3.000 0.000 NA   NA
 3544235 3544236 NMCC_0964 NMCC_0965   trpE TRUE 0.879 -3.000 0.000 NA   NA
 3544236 3544237 NMCC_0965 NMCC_0966 trpE abcZ FALSE 0.188 350.000 0.000 1.000   NA
 3544237 3544238 NMCC_0966 NMCC_0967 abcZ dedA TRUE 0.904 4.000 0.000 NA   NA
 3544238 3544239 NMCC_0967 NMCC_0968 dedA opcA FALSE 0.378 165.000 0.000 NA   NA
 3544239 3544240 NMCC_0968 NMCC_0969 opcA   FALSE 0.111 886.000 0.000 NA   NA
 3544240 3544241 NMCC_0969 NMCC_0970     FALSE 0.415 127.000 0.000 NA   NA
 3544241 3544242 NMCC_0970 NMCC_0971   glyA FALSE 0.306 217.000 0.000 NA   NA
 3544242 3544243 NMCC_0971 NMCC_0972 glyA   TRUE 0.518 66.000 0.000 NA   NA
 3544243 3544244 NMCC_0972 NMCC_0973   ggt FALSE 0.299 221.000 0.000 NA   NA
 3544245 3544246 NMCC_0974 NMCC_0975     TRUE 0.755 -24.000 0.000 NA   NA
 3544247 3544248 NMCC_0976 NMCC_0977 fbp   FALSE 0.262 246.000 0.000 1.000   NA
 3544248 3544249 NMCC_0977 NMCC_0978     TRUE 0.503 77.000 0.000 1.000   NA
 3544250 3544251 NMCC_0979 NMCC_0980 folB   FALSE 0.448 34.000 0.000 1.000 N NA
 3544251 3544252 NMCC_0980 NMCC_0981     FALSE 0.310 214.000 0.000 NA   NA
 3544252 3544253 NMCC_0981 NMCC_0982     FALSE 0.388 141.000 0.000 NA   NA
 3544254 3544255 NMCC_0983 NMCC_0984 crcB   TRUE 0.702 29.000 0.000 NA   NA
 3544257 3544258 NMCC_0986 NMCC_0987 proA proB TRUE 0.998 13.000 0.281 0.003 Y NA
 3544259 3544260 NMCC_0988 NMCC_0989 leuA   FALSE 0.329 200.000 0.000 NA   NA
 3544261 3544262 NMCC_0990 NMCC_0991 lgt   FALSE 0.324 71.000 0.000 1.000 N NA
 3544264 3544265 NMCC_0993 NMCC_0994     FALSE 0.149 493.000 0.000 NA   NA
 3544265 3544266 NMCC_0994 NMCC_0995     TRUE 0.767 -3.000 0.000 1.000 N NA
 3544266 3544267 NMCC_0995 NMCC_0996     TRUE 0.756 42.000 0.000 0.095   NA
 3544267 3544268 NMCC_0996 NMCC_0997     FALSE 0.271 248.000 0.000 NA   NA
 3544269 3544270 NMCC_0998 NMCC_0999     TRUE 0.863 12.000 0.000 NA   NA
 3544270 3544271 NMCC_0999 NMCC_1000     TRUE 0.689 30.000 0.000 NA   NA
 3544271 3544272 NMCC_1000 NMCC_1001     TRUE 0.518 90.000 0.000 NA   NA
 3544272 3544273 NMCC_1001 NMCC_1002     TRUE 0.846 -7.000 0.000 NA   NA
 3544273 3544274 NMCC_1002 NMCC_1003     FALSE 0.379 163.000 0.000 NA   NA
 3544274 3544275 NMCC_1003 NMCC_1004   gam FALSE 0.221 306.000 0.000 NA   NA
 3544276 3544277 NMCC_1005 NMCC_1006     FALSE 0.385 146.000 0.000 NA   NA
 3544277 3544278 NMCC_1006 NMCC_1007     TRUE 0.904 4.000 0.000 NA   NA
 3544278 3544279 NMCC_1007 NMCC_1008     FALSE 0.407 129.000 0.000 NA   NA
 3544279 3544280 NMCC_1008 NMCC_1009     TRUE 0.773 -21.000 0.000 NA   NA
 3544280 3544281 NMCC_1009 NMCC_1010     FALSE 0.339 193.000 0.000 NA   NA
 3544282 3544283 NMCC_1011 NMCC_1012     TRUE 0.992 45.000 0.667 NA   NA
 3544283 3544284 NMCC_1012 NMCC_1013     FALSE 0.267 251.000 0.000 NA   NA
 3544284 3544285 NMCC_1013 NMCC_1014     TRUE 0.879 -3.000 0.000 NA   NA
 3544285 3544286 NMCC_1014 NMCC_1015     FALSE 0.262 256.000 0.000 NA   NA
 3544286 3544287 NMCC_1015 NMCC_1016     TRUE 0.879 -3.000 0.000 NA   NA
 3544287 3544288 NMCC_1016 NMCC_1017     TRUE 0.903 3.000 0.000 NA   NA
 3544288 3544289 NMCC_1017 NMCC_1018     TRUE 0.903 3.000 0.000 NA   NA
 3544289 3544290 NMCC_1018 NMCC_1019     TRUE 0.741 -28.000 0.000 NA   NA
 3544290 3544291 NMCC_1019 NMCC_1020     TRUE 0.578 44.000 0.000 NA   NA
 3544293 3544294 NMCC_1022 NMCC_1023     TRUE 0.879 -3.000 0.000 NA   NA
 3544294 3544295 NMCC_1023 NMCC_1024     TRUE 0.863 12.000 0.000 NA   NA
 3544295 3544296 NMCC_1024 NMCC_1025     TRUE 0.879 -3.000 0.000 NA   NA
 3544296 3544297 NMCC_1025 NMCC_1026     TRUE 0.903 3.000 0.000 NA   NA
 3544297 3544298 NMCC_1026 NMCC_1027     TRUE 0.866 521.000 0.485 NA   NA
 3544298 3544299 NMCC_1027 NMCC_1028     TRUE 0.975 0.000 0.121 NA   NA
 3544299 3544300 NMCC_1028 NMCC_1029     TRUE 0.998 -100.000 1.000 NA   NA
 3544300 3544301 NMCC_1029 NMCC_1030     TRUE 0.884 110.000 0.200 NA   NA
 3544301 3544302 NMCC_1030 NMCC_1031     TRUE 0.499 207.000 0.045 NA   NA
 3544302 3544303 NMCC_1031 NMCC_1032     FALSE 0.153 462.000 0.000 NA   NA
 3544303 3544304 NMCC_1032 NMCC_1033     TRUE 0.999 -3.000 1.000 NA   NA
 3544304 3544305 NMCC_1033 NMCC_1034     TRUE 0.873 11.000 0.000 NA   NA
 3544306 3544307 NMCC_1035 NMCC_1036     TRUE 0.515 70.000 0.000 NA   NA
 3544307 3544308 NMCC_1036 NMCC_1037     TRUE 0.741 -28.000 0.000 NA   NA
 3544309 3544310 NMCC_1038 NMCC_1039     TRUE 0.773 -21.000 0.000 NA   NA
 3544310 3544311 NMCC_1039 NMCC_1040     FALSE 0.391 138.000 0.000 NA   NA
 3544311 3544312 NMCC_1040 NMCC_1041     FALSE 0.210 323.000 0.000 NA   NA
 3544312 3544313 NMCC_1041 NMCC_1042   chpA2 TRUE 0.994 -6.000 0.264 NA Y NA
 3544314 3544315 NMCC_1043 NMCC_1044     FALSE 0.133 564.000 0.000 NA   NA
 3544315 3544316 NMCC_1044 NMCC_1045     TRUE 0.999 -3.000 0.740 NA   NA
 3544316 3544317 NMCC_1045 NMCC_1046     TRUE 0.991 42.000 0.625 NA   NA
 3544317 3544318 NMCC_1046 NMCC_1047     FALSE 0.215 165.000 0.000 1.000 N NA
 3544318 3544319 NMCC_1047 NMCC_1048     TRUE 0.803 84.000 0.019 0.020   NA
 3544319 3544320 NMCC_1048 NMCC_1049     TRUE 0.630 82.000 0.028 1.000   NA
 3544321 3544322 NMCC_1050 NMCC_1051 hscA   TRUE 0.514 62.000 0.000 NA   NA
 3544322 3544323 NMCC_1051 NMCC_1052     FALSE 0.383 151.000 0.000 NA   NA
 3544323 3544324 NMCC_1052 NMCC_1053     TRUE 0.619 37.000 0.000 NA   NA
 3544324 3544325 NMCC_1053 NMCC_1054   fdx TRUE 0.530 54.000 0.000 NA   NA
 3544325 3544326 NMCC_1054 NMCC_1055 fdx   FALSE 0.243 275.000 0.000 NA   NA
 3544326 3544327 NMCC_1055 NMCC_1056     TRUE 0.879 -3.000 0.000 NA   NA
 3544329 3544330 NMCC_1058 NMCC_1059 accA   TRUE 0.770 67.000 0.123 1.000 N NA
 3544330 3544331 NMCC_1059 NMCC_1060     FALSE 0.351 51.000 0.000 1.000 N NA
 3544331 3544332 NMCC_1060 NMCC_1061     TRUE 0.882 10.000 0.000 NA   NA
 3544332 3544333 NMCC_1061 NMCC_1062     TRUE 0.675 -156.000 0.000 NA   NA
 3544333 3544334 NMCC_1062 NMCC_1063     FALSE 0.307 215.000 0.000 NA   NA
 3544334 3544335 NMCC_1063 NMCC_1064     TRUE 0.863 12.000 0.000 NA   NA
 3544335 3544336 NMCC_1064 NMCC_1065   mpl TRUE 0.514 62.000 0.000 NA   NA
 3544336 3544337 NMCC_1065 NMCC_1066 mpl bioB TRUE 0.785 9.000 0.000 1.000 N NA
 3544338 3544339 NMCC_1067 NMCC_1068   ilvD FALSE 0.119 646.000 0.000 1.000   NA
 3544339 3544340 NMCC_1068 NMCC_1069 ilvD cysI TRUE 0.511 -55.000 0.000 1.000 N NA
 3544340 3544341 NMCC_1069 NMCC_1070 cysI cysJ TRUE 0.999 27.000 0.791 0.001 Y NA
 3544341 3544342 NMCC_1070 NMCC_1071 cysJ cysN TRUE 0.966 -3.000 0.015 1.000 Y NA
 3544342 3544343 NMCC_1071 NMCC_1072 cysN cysD TRUE 0.953 39.000 0.182 0.001 N NA
 3544343 3544344 NMCC_1072 NMCC_1073 cysD cysH TRUE 0.849 38.000 0.011 1.000 Y NA
 3544344 3544345 NMCC_1073 NMCC_1074 cysH cysG TRUE 0.921 -22.000 0.011 1.000 Y NA
 3544345 3544346 NMCC_1074 NMCC_1075 cysG   FALSE 0.241 276.000 0.000 NA   NA
 3544346 3544347 NMCC_1075 NMCC_1076     TRUE 0.854 13.000 0.000 NA   NA
 3544348 3544349 NMCC_1077 NMCC_1078   typA FALSE 0.099 393.000 0.000 NA N NA
 3544350 3544351 NMCC_1079 NMCC_1080     TRUE 0.605 39.000 0.000 NA   NA
 3544351 3544352 NMCC_1080 NMCC_1081     TRUE 0.626 36.000 0.000 NA   NA
 3544353 3544354 NMCC_1082 NMCC_1083 vacB   TRUE 0.896 0.000 0.000 NA   NA
 3544355 3544356 NMCC_1084 NMCC_1085 guaB   FALSE 0.228 294.000 0.000 NA   NA
 3544356 3544357 NMCC_1085 NMCC_1086   glnD TRUE 0.518 90.000 0.000 NA   NA
 3544357 3544358 NMCC_1086 NMCC_1087 glnD   TRUE 0.541 48.000 0.000 1.000   NA
 3544358 3544359 NMCC_1087 NMCC_1088   bfrB FALSE 0.219 292.000 0.000 1.000   NA
 3544359 3544360 NMCC_1088 NMCC_1089 bfrB bfrA TRUE 0.997 28.000 0.396 0.001 Y NA
 3544361 3544362 NMCC_1090 NMCC_1091     FALSE 0.111 886.000 0.000 NA   NA
 3544362 3544363 NMCC_1091 NMCC_1092     FALSE 0.113 822.000 0.000 NA   NA
 3544363 3544364 NMCC_1092 NMCC_1093     TRUE 0.873 -3.000 0.000 1.000   NA
 3544364 3544365 NMCC_1093 NMCC_1094     FALSE 0.153 434.000 0.000 1.000   NA
 3544366 3544367 NMCC_1095 NMCC_1096     TRUE 0.998 -7.000 0.319 0.001 Y NA
 3544367 3544368 NMCC_1096 NMCC_1098     TRUE 0.989 3.000 0.219 NA   NA
 3544369 3544370 NMCC_1097 NMCC_1099     TRUE 0.515 58.000 0.000 NA   NA
 3544371 3544372 NMCC_1100 NMCC_1102     TRUE 0.792 65.000 0.091 NA   NA
 3544373 3544374 NMCC_1101 NMCC_1103 ung   FALSE 0.351 184.000 0.000 NA   NA
 3544374 3544375 NMCC_1103 NMCC_1104     TRUE 0.493 102.000 0.000 NA   NA
 3544376 3544377 NMCC_1105 NMCC_1106     FALSE 0.344 189.000 0.000 NA   NA
 3544377 3544378 NMCC_1106 NMCC_1107     TRUE 0.806 -13.000 0.000 NA   NA
 3544378 3544379 NMCC_1107 NMCC_1108     TRUE 0.519 77.000 0.000 NA   NA
 3544380 3544381 NMCC_1109 NMCC_1110 hom   TRUE 0.846 -7.000 0.000 NA   NA
 3544382 3544383 NMCC_1111 NMCC_1112 hupB lon FALSE 0.353 182.000 0.033 1.000 N NA
 3544385 3544386 NMCC_1114 NMCC_1115 recD lolD TRUE 0.590 67.000 0.000 0.092 N NA
 3544386 3544387 NMCC_1115 NMCC_1116 lolD lolC TRUE 0.995 -67.000 0.620 0.031 N NA
 3544389 3544390 NMCC_1118 NMCC_1119 recR   TRUE 0.502 67.000 0.000 1.000   NA
 3544390 3544391 NMCC_1119 NMCC_1121     TRUE 0.508 80.000 0.000 1.000   NA
 3544392 3544393 NMCC_1120 NMCC_1122   cca TRUE 0.706 85.000 0.000 0.092   NA
 3544393 3544394 NMCC_1122 NMCC_1123 cca   FALSE 0.295 224.000 0.000 NA   NA
 3544394 3544395 NMCC_1123 NMCC_1124   ruvB TRUE 0.525 82.000 0.000 NA   NA
 3544398 3544399 NMCC_1127 NMCC_1128   ribC TRUE 0.809 -10.000 0.000 1.000   NA
 3544399 3544400 NMCC_1128 NMCC_1129 ribC   TRUE 0.654 163.000 0.000 NA Y NA
 3544401 3544402 NMCC_1130 NMCC_1131     TRUE 1.000 -3.000 0.686 0.003 Y NA
 3544403 3544404 NMCC_1132 NMCC_1133   purM FALSE 0.351 184.000 0.000 NA   NA
 3544407 3544408 NMCC_1136 NMCC_1137   ribA TRUE 0.846 -7.000 0.000 NA   NA
 3544408 3544409 NMCC_1137 NMCC_1138 ribA   FALSE 0.384 147.000 0.000 NA   NA
 3544409 3544410 NMCC_1138 NMCC_1139   ribB FALSE 0.102 1115.000 0.000 NA   NA
 3544411 3544412 NMCC_1140 NMCC_1141     TRUE 0.949 48.000 0.086 0.060 Y NA
 3544412 3544413 NMCC_1141 NMCC_1142     TRUE 0.864 125.000 0.000 0.002 Y NA
 3544413 3544414 NMCC_1142 NMCC_1143     TRUE 0.559 114.000 0.000 0.060 N NA
 3544415 3544416 NMCC_1144 NMCC_1145     TRUE 0.524 86.000 0.000 NA   NA
 3544418 3544419 NMCC_1147 NMCC_1148     FALSE 0.267 251.000 0.000 NA   NA
 3544419 3544420 NMCC_1148 NMCC_1149   thrC TRUE 0.514 73.000 0.000 NA   NA
 3544420 3544421 NMCC_1149 NMCC_1150 thrC   TRUE 0.514 59.000 0.000 NA   NA
 3544421 3544422 NMCC_1150 NMCC_1151   fpr1 FALSE 0.307 215.000 0.000 NA   NA
 3544422 3544423 NMCC_1151 NMCC_1152 fpr1   FALSE 0.219 308.000 0.000 NA   NA
 3544424 3544425 NMCC_1153 NMCC_1154   hflX TRUE 0.698 -42.000 0.000 1.000   NA
 3544425 3544426 NMCC_1154 NMCC_1155 hflX   TRUE 0.903 5.000 0.000 NA   NA
 3544426 3544427 NMCC_1155 NMCC_1156     FALSE 0.383 153.000 0.000 NA   NA
 3544427 3544428 NMCC_1156 NMCC_1157   radC TRUE 0.514 73.000 0.000 NA   NA
 3544428 3544429 NMCC_1157 NMCC_1158 radC gshA FALSE 0.417 123.000 0.000 1.000   NA
 3544430 3544431 NMCC_1159 NMCC_1160 leuC   TRUE 0.504 97.000 0.000 NA   NA
 3544431 3544432 NMCC_1160 NMCC_1161   leuD TRUE 0.514 62.000 0.000 NA   NA
 3544432 3544433 NMCC_1161 NMCC_1162 leuD   FALSE 0.210 170.000 0.000 1.000 N NA
 3544433 3544434 NMCC_1162 NMCC_1163   nlaIVR TRUE 0.974 16.000 0.200 1.000   NA
 3544434 3544435 NMCC_1163 NMCC_1164 nlaIVR leuB TRUE 0.628 34.000 0.000 1.000   NA
 3544435 3544436 NMCC_1164 NMCC_1165 leuB   FALSE 0.379 163.000 0.000 NA   NA
 3544436 3544437 NMCC_1165 NMCC_1166   aspA FALSE 0.169 413.000 0.000 NA   NA
 3544438 3544439 NMCC_1167 NMCC_1168     TRUE 0.902 2.000 0.000 NA   NA
 3544439 3544440 NMCC_1168 NMCC_1170     TRUE 0.746 22.000 0.000 1.000   NA
 3544441 3544442 NMCC_1169 NMCC_1171     TRUE 0.798 -16.000 0.000 NA   NA
 3544442 3544443 NMCC_1171 NMCC_1172     FALSE 0.314 212.000 0.000 NA   NA
 3544444 3544445 NMCC_1173 NMCC_1174   ppiA TRUE 0.798 -16.000 0.000 NA   NA
 3544445 3544446 NMCC_1174 NMCC_1175 ppiA   TRUE 0.517 65.000 0.000 NA   NA
 3544446 3544447 NMCC_1175 NMCC_1176     TRUE 0.965 -3.000 0.103 NA   NA
 3544447 3544448 NMCC_1176 NMCC_1177     TRUE 0.532 -40.000 0.000 1.000 N NA
 3544448 3544449 NMCC_1177 NMCC_1178     FALSE 0.249 125.000 0.000 1.000 N NA
 3544449 3544450 NMCC_1178 NMCC_1179     FALSE 0.472 114.000 0.000 NA   NA
 3544450 3544451 NMCC_1179 NMCC_1180     FALSE 0.285 235.000 0.000 NA   NA
 3544451 3544452 NMCC_1180 NMCC_1181     FALSE 0.312 202.000 0.000 1.000   NA
 3544452 3544453 NMCC_1181 NMCC_1182     TRUE 0.518 67.000 0.000 NA   NA
 3544454 3544455 NMCC_1183 NMCC_1184 algI   TRUE 0.987 11.000 0.244 NA   NA
 3544455 3544456 NMCC_1184 NMCC_1185     TRUE 0.958 -3.000 0.000 0.006   NA
 3544459 3544460 NMCC_1188 NMCC_1189     TRUE 0.899 7.000 0.000 NA   NA
 3544462 3544463 NMCC_1191 NMCC_1192     TRUE 0.741 -28.000 0.000 NA   NA
 3544463 3544464 NMCC_1192 NMCC_1193     TRUE 0.832 -9.000 0.000 NA   NA
 3544465 3544466 NMCC_1194 NMCC_1195 mfd panD TRUE 0.712 14.000 0.000 1.000 N NA
 3544466 3544467 NMCC_1195 NMCC_1196 panD kdsA TRUE 0.586 22.000 0.000 1.000 N NA
 3544467 3544468 NMCC_1196 NMCC_1197 kdsA   TRUE 0.835 15.000 0.000 NA   NA
 3544468 3544469 NMCC_1197 NMCC_1198   eno TRUE 0.563 47.000 0.000 NA   NA
 3544469 3544470 NMCC_1198 NMCC_1199 eno ftsB TRUE 0.973 15.000 0.241 1.000 N NA
 3544471 3544472 NMCC_1200 NMCC_1201   nrdB TRUE 0.504 121.000 0.046 1.000 N NA
 3544472 3544473 NMCC_1201 NMCC_1202 nrdB   TRUE 0.582 40.000 0.000 1.000   NA
 3544473 3544474 NMCC_1202 NMCC_1203     TRUE 0.982 -7.000 0.150 0.059   NA
 3544474 3544475 NMCC_1203 NMCC_1204   nrdA FALSE 0.324 58.000 0.000 1.000 N NA
 3544475 3544476 NMCC_1204 NMCC_1205 nrdA   FALSE 0.381 157.000 0.000 NA   NA
 3544478 3544479 NMCC_1207 NMCC_1208 plsC fpg FALSE 0.231 88.000 0.003 1.000 N NA
 3544479 3544480 NMCC_1208 NMCC_1209 fpg   TRUE 0.540 52.000 0.000 NA   NA
 3544481 3544482 NMCC_1210 NMCC_1211   rsuA TRUE 0.671 -10.000 0.000 1.000 N NA
 3544482 3544483 NMCC_1211 NMCC_1212 rsuA   FALSE 0.124 688.000 0.000 NA   NA
 3544483 3544484 NMCC_1212 NMCC_1213   cmk FALSE 0.468 115.000 0.000 NA   NA
 3544484 3544485 NMCC_1213 NMCC_1214 cmk rpsA TRUE 0.849 155.000 0.281 1.000 N NA
 3544485 3544486 NMCC_1214 NMCC_1215 rpsA hip TRUE 0.941 38.000 0.292 1.000 N NA
 3544488 3544489 NMCC_1217 NMCC_1218 adhC esd TRUE 0.945 108.000 0.327 1.000   NA
 3544489 3544490 NMCC_1218 NMCC_1219 esd   FALSE 0.121 731.000 0.000 NA   NA
 3544490 3544491 NMCC_1219 NMCC_1220   ndk FALSE 0.366 173.000 0.000 NA   NA
 3544491 3544492 NMCC_1220 NMCC_1221 ndk   TRUE 0.771 143.000 0.156 1.000   NA
 3544492 3544493 NMCC_1221 NMCC_1222     TRUE 0.967 3.000 0.086 1.000   NA
 3544493 3544494 NMCC_1222 NMCC_1223     TRUE 0.624 16.000 0.005 1.000 N NA
 3544495 3544496 NMCC_1224 NMCC_1225 clpP tig TRUE 0.980 96.000 0.351 1.000 Y NA
 3544496 3544497 NMCC_1225 NMCC_1226 tig ftsK2 FALSE 0.304 209.000 0.000 1.000   NA
 3544500 3544501 NMCC_1229 NMCC_1230     TRUE 0.744 24.000 0.000 NA   NA
 3544501 3544502 NMCC_1230 NMCC_1231   pssA TRUE 0.515 75.000 0.000 NA   NA
 3544502 3544503 NMCC_1231 NMCC_1232 pssA   TRUE 0.894 1.000 0.000 1.000   NA
 3544503 3544504 NMCC_1232 NMCC_1233     FALSE 0.216 313.000 0.000 NA   NA
 3544505 3544506 NMCC_1234 NMCC_1235   rplI TRUE 0.569 46.000 0.000 NA   NA
 3544506 3544507 NMCC_1235 NMCC_1236 rplI rpsR TRUE 0.999 17.000 0.499 0.023 Y NA
 3544507 3544508 NMCC_1236 NMCC_1237 rpsR priB TRUE 0.966 7.000 0.128 1.000 N NA
 3544508 3544509 NMCC_1237 NMCC_1238 priB rpsF TRUE 0.964 1.000 0.122 1.000 N NA
 3544509 3544510 NMCC_1238 NMCC_1239 rpsF trxB FALSE 0.218 156.000 0.000 1.000 N NA
 3544511 3544512 NMCC_1240 NMCC_1241   uvrC FALSE 0.325 64.000 0.000 1.000 N NA
 3544512 3544513 NMCC_1241 NMCC_1242 uvrC   FALSE 0.268 242.000 0.000 1.000   NA
 3544513 3544514 NMCC_1242 NMCC_1243     FALSE 0.425 122.000 0.000 1.000   NA
 3544515 3544516 NMCC_1244 NMCC_1245 uvrB   FALSE 0.176 206.000 0.000 1.000 N NA
 3544516 3544517 NMCC_1245 NMCC_1246     TRUE 0.536 127.000 0.000 0.025 N NA
 3544517 3544518 NMCC_1246 NMCC_1247     TRUE 0.514 73.000 0.000 NA   NA
 3544519 3544520 NMCC_1248 NMCC_1249 creA   TRUE 0.902 2.000 0.000 NA   NA
 3544520 3544521 NMCC_1249 NMCC_1250     TRUE 0.979 -7.000 0.263 NA N NA
 3544522 3544523 NMCC_1251 NMCC_1252   proS FALSE 0.324 63.000 0.000 1.000 N NA
 3544524 3544525 NMCC_1253 NMCC_1254   aceE TRUE 0.854 13.000 0.000 NA   NA
 3544525 3544526 NMCC_1254 NMCC_1255 aceE aceF TRUE 0.737 150.000 0.031 1.000 Y NA
 3544526 3544527 NMCC_1255 NMCC_1256 aceF lpdA TRUE 0.988 77.000 0.463 1.000 Y NA
 3544528 3544529 NMCC_1257 NMCC_1258     FALSE 0.478 112.000 0.000 NA   NA
 3544529 3544530 NMCC_1258 NMCC_1259     FALSE 0.258 259.000 0.000 NA   NA
 3544531 3544532 NMCC_1260 NMCC_1261     FALSE 0.373 166.000 0.007 NA   NA
 3544532 3544533 NMCC_1261 NMCC_1262     TRUE 0.669 32.000 0.000 NA   NA
 3544533 3544534 NMCC_1262 NMCC_1263     FALSE 0.378 165.000 0.000 NA   NA
 3544535 3544536 NMCC_1264 NMCC_1265     TRUE 0.821 5.000 0.000 NA N NA
 3544537 3544538 NMCC_1266 NMCC_1267 gatC gatA TRUE 0.998 63.000 0.643 0.002 Y NA
 3544538 3544539 NMCC_1267 NMCC_1268 gatA   TRUE 0.755 -24.000 0.000 NA   NA
 3544539 3544540 NMCC_1268 NMCC_1269   gatB TRUE 0.491 43.000 0.002 NA   NA
 3544540 3544541 NMCC_1269 NMCC_1270 gatB   FALSE 0.171 212.000 0.000 1.000 N NA
 3544544 3544545 NMCC_1273 NMCC_1274   xseA FALSE 0.097 1076.000 0.000 1.000   NA
 3544551 3544552 NMCC_1280 NMCC_1281     TRUE 0.845 14.000 0.000 NA   NA
 3544552 3544553 NMCC_1281 NMCC_1282     TRUE 0.758 22.000 0.000 NA   NA
 3544556 3544557 NMCC_1285 NMCC_1286 rbfA truB TRUE 0.997 6.000 0.318 1.000 Y NA
 3544557 3544558 NMCC_1286 NMCC_1287 truB   FALSE 0.323 204.000 0.000 NA   NA
 3544558 3544559 NMCC_1287 NMCC_1288     FALSE 0.229 293.000 0.000 NA   NA
 3544559 3544560 NMCC_1288 NMCC_1289     TRUE 0.912 -10.000 0.000 0.058   NA
 3544561 3544562 NMCC_1290 NMCC_1292 lldA   FALSE 0.445 121.000 0.000 NA   NA
 3544563 3544564 NMCC_1291 NMCC_1293     TRUE 0.897 29.000 0.160 1.000 N NA
 3544564 3544565 NMCC_1293 NMCC_1294     FALSE 0.106 973.000 0.000 NA   NA
 3544565 3544566 NMCC_1294 NMCC_1295     TRUE 0.518 66.000 0.000 NA   NA
 3544566 3544567 NMCC_1295 NMCC_1296     TRUE 0.994 27.000 0.359 0.002   NA
 3544567 3544568 NMCC_1296 NMCC_1297   hscB TRUE 0.932 263.000 0.500 1.000   NA
 3544568 3544569 NMCC_1297 NMCC_1298 hscB gyrA FALSE 0.314 98.000 0.000 1.000 N NA
 3544569 3544570 NMCC_1298 NMCC_1299 gyrA   TRUE 0.656 157.000 0.000 NA Y NA
 3544570 3544571 NMCC_1299 NMCC_1300     FALSE 0.160 435.000 0.000 NA   NA
 3544572 3544573 NMCC_1301 NMCC_1302     TRUE 0.573 45.000 0.000 NA   NA
 3544573 3544574 NMCC_1302 NMCC_1303   pgi1 TRUE 0.845 14.000 0.000 NA   NA
 3544574 3544575 NMCC_1303 NMCC_1304 pgi1   FALSE 0.266 121.000 0.000 1.000 N NA
 3544575 3544576 NMCC_1304 NMCC_1305   glk FALSE 0.354 50.000 0.000 1.000 N NA
 3544576 3544577 NMCC_1305 NMCC_1306 glk pgl TRUE 0.974 -19.000 0.117 1.000 Y NA
 3544577 3544578 NMCC_1306 NMCC_1307 pgl zwf TRUE 0.522 280.000 0.011 1.000 Y NA
 3544579 3544580 NMCC_1308 NMCC_1309 edd eda TRUE 0.595 197.000 0.000 1.000 Y NA
 3544582 3544583 NMCC_1311 NMCC_1312 mutY   TRUE 0.835 15.000 0.000 NA   NA
 3544583 3544584 NMCC_1312 NMCC_1313     TRUE 0.785 -19.000 0.000 NA   NA
 3544584 3544585 NMCC_1313 NMCC_1314   sodC FALSE 0.382 156.000 0.000 NA   NA
 3544586 3544587 NMCC_1315 NMCC_1316     TRUE 0.798 -16.000 0.000 NA   NA
 3544587 3544588 NMCC_1316 NMCC_1317     FALSE 0.260 257.000 0.000 NA   NA
 3544588 3544589 NMCC_1317 NMCC_1318     FALSE 0.065 718.000 0.000 NA N NA
 3544590 3544591 NMCC_1319 NMCC_1320   frpA2 TRUE 0.814 17.000 0.000 NA   NA
 3544592 3544593 NMCC_1321 NMCC_1322 pepN   FALSE 0.227 136.000 0.000 1.000 N NA
 3544593 3544594 NMCC_1322 NMCC_1323     FALSE 0.463 116.000 0.000 NA   NA
 3544594 3544595 NMCC_1323 NMCC_1324   msbB FALSE 0.159 439.000 0.000 NA   NA
 3544595 3544596 NMCC_1324 NMCC_1325 msbB ruvC TRUE 0.598 21.000 0.000 1.000 N NA
 3544596 3544597 NMCC_1325 NMCC_1326 ruvC fis TRUE 0.956 -3.000 0.000 1.000 Y NA
 3544597 3544598 NMCC_1326 NMCC_1327 fis   TRUE 0.896 30.000 0.161 1.000 N NA
 3544599 3544600 NMCC_1328 NMCC_1329     FALSE 0.097 1416.000 0.000 NA   NA
 3544602 3544603 NMCC_1331 NMCC_1332     FALSE 0.366 173.000 0.000 NA   NA
 3544603 3544604 NMCC_1332 NMCC_1333     FALSE 0.154 460.000 0.000 NA   NA
 3544604 3544605 NMCC_1333 NMCC_1334     TRUE 0.677 31.000 0.000 NA   NA
 3544606 3544607 NMCC_1335 NMCC_1336 lysS   FALSE 0.189 191.000 0.000 1.000 N NA
 3544610 3544611 NMCC_1339 NMCC_1340     FALSE 0.181 390.000 0.000 NA   NA
 3544614 3544615 NMCC_1343 NMCC_1344     FALSE 0.321 106.000 0.000 NA N NA
 3544615 3544616 NMCC_1344 NMCC_1345   agrA FALSE 0.415 38.000 0.000 1.000 N NA
 3544617 3544618 NMCC_1346 NMCC_1347     TRUE 0.982 -3.000 0.194 NA   NA
 3544618 3544619 NMCC_1347 NMCC_1348     TRUE 0.999 -3.000 0.639 0.002   NA
 3544620 3544621 NMCC_1349 NMCC_1350 purE   TRUE 0.541 48.000 0.000 1.000   NA
 3544621 3544622 NMCC_1350 NMCC_1351     TRUE 0.890 0.000 0.000 1.000   NA
 3544622 3544623 NMCC_1351 NMCC_1352     TRUE 0.545 164.000 0.041 NA   NA
 3544624 3544625 NMCC_1353 NMCC_1354 mutL dnaZX TRUE 0.855 95.000 0.000 0.088 Y NA
 3544625 3544626 NMCC_1354 NMCC_1355 dnaZX   TRUE 0.971 80.000 0.411 NA   NA
 3544628 3544629 NMCC_1357 NMCC_1358 aroD rep TRUE 0.541 -37.000 0.000 1.000 N NA
 3544630 3544631 NMCC_1359 NMCC_1360 dinP   FALSE 0.349 174.000 0.000 1.000   NA
 3544631 3544632 NMCC_1360 NMCC_1361     TRUE 0.881 -58.000 0.000 0.005   NA
 3544635 3544636 NMCC_1364 NMCC_1365     TRUE 0.805 18.000 0.000 NA   NA
 3544636 3544637 NMCC_1365 NMCC_1366     FALSE 0.136 559.000 0.000 NA   NA
 3544638 3544639 NMCC_1367 NMCC_1368     TRUE 0.940 3.000 0.030 NA   NA
 3544639 3544640 NMCC_1368 NMCC_1369     FALSE 0.257 260.000 0.000 NA   NA
 3544641 3544642 NMCC_1370 NMCC_1371 tkt fumC FALSE 0.223 141.000 0.000 1.000 N NA
 3544643 3544644 NMCC_1372 NMCC_1373   ssb FALSE 0.103 337.000 0.000 1.000 N NA
 3544644 3544645 NMCC_1373 NMCC_1374 ssb   TRUE 0.889 4.000 0.022 1.000 N NA
 3544645 3544646 NMCC_1374 NMCC_1375     TRUE 0.485 108.000 0.000 NA   NA
 3544646 3544647 NMCC_1375 NMCC_1376     FALSE 0.124 688.000 0.000 NA   NA
 3544647 3544648 NMCC_1376 NMCC_1377     TRUE 0.752 67.000 0.000 0.015   NA
 3544648 3544649 NMCC_1377 NMCC_1378   opa95 FALSE 0.052 950.000 0.000 1.000 N NA
 3544650 3544651 NMCC_1379 NMCC_1380   ppx FALSE 0.458 117.000 0.000 NA   NA
 3544652 3544653 NMCC_1381 NMCC_1382     FALSE 0.212 319.000 0.000 NA   NA
 3544653 3544654 NMCC_1382 NMCC_1383   trpS TRUE 0.901 6.000 0.000 NA   NA
 3544656 3544657 NMCC_1385 NMCC_1386     TRUE 0.503 89.000 0.000 1.000   NA
 3544659 3544660 NMCC_1388 NMCC_1389 gluD   FALSE 0.241 276.000 0.000 NA   NA
 3544661 3544662 NMCC_1390 NMCC_1391   recX FALSE 0.327 191.000 0.000 1.000   NA
 3544662 3544663 NMCC_1391 NMCC_1392 recX   TRUE 0.779 20.000 0.000 NA   NA
 3544663 3544664 NMCC_1392 NMCC_1393     FALSE 0.383 153.000 0.000 NA   NA
 3544665 3544666 NMCC_1394 NMCC_1395 nlpD surE FALSE 0.249 256.000 0.000 1.000   NA
 3544666 3544667 NMCC_1395 NMCC_1396 surE   TRUE 0.804 17.000 0.000 1.000   NA
 3544667 3544668 NMCC_1396 NMCC_1397     TRUE 0.552 49.000 0.000 NA   NA
 3544668 3544669 NMCC_1397 NMCC_1398   fimB FALSE 0.423 125.000 0.000 NA   NA
 3544669 3544670 NMCC_1398 NMCC_1399 fimB gabD FALSE 0.167 415.000 0.000 NA   NA
 3544670 3544671 NMCC_1399 NMCC_1400 gabD   FALSE 0.115 811.000 0.000 NA   NA
 3544672 3544673 NMCC_1401 NMCC_1402 cstA   TRUE 0.818 -10.000 0.000 NA   NA
 3544673 3544674 NMCC_1402 NMCC_1403     FALSE 0.103 1050.000 0.000 NA   NA
 3544674 3544675 NMCC_1403 NMCC_1404     TRUE 0.689 30.000 0.000 NA   NA
 3544676 3544677 NMCC_1405 NMCC_1406 lysC rph FALSE 0.084 409.000 0.000 1.000 N NA
 3544677 3544678 NMCC_1406 NMCC_1407 rph   FALSE 0.333 82.000 0.000 1.000 N NA
 3544679 3544680 NMCC_1408 NMCC_1409   scpA FALSE 0.276 245.000 0.000 NA   NA
 3544680 3544681 NMCC_1409 NMCC_1410 scpA pncB TRUE 0.591 41.000 0.000 NA   NA
 3544681 3544682 NMCC_1410 NMCC_1411 pncB argS FALSE 0.326 65.000 0.000 1.000 N NA
 3544682 3544683 NMCC_1411 NMCC_1412 argS   TRUE 0.509 95.000 0.000 NA   NA
 3544683 3544684 NMCC_1412 NMCC_1413     TRUE 0.711 -42.000 0.000 NA   NA
 3544685 3544686 NMCC_1414 NMCC_1415     FALSE 0.120 284.000 0.000 1.000 N NA
 3544686 3544687 NMCC_1415 NMCC_1416   rpiA FALSE 0.218 156.000 0.000 1.000 N NA
 3544687 3544688 NMCC_1416 NMCC_1417 rpiA   FALSE 0.267 77.000 0.005 1.000 N NA
 3544688 3544689 NMCC_1417 NMCC_1418     TRUE 0.993 32.000 0.419 1.000 Y NA
 3544689 3544690 NMCC_1418 NMCC_1419   dnaQ TRUE 0.706 -3.000 0.004 1.000 N NA
 3544690 3544691 NMCC_1419 NMCC_1420 dnaQ   FALSE 0.207 327.000 0.000 NA   NA
 3544691 3544692 NMCC_1420 NMCC_1421   fixS TRUE 0.818 -10.000 0.000 NA   NA
 3544692 3544693 NMCC_1421 NMCC_1422 fixS   TRUE 0.896 0.000 0.000 NA   NA
 3544694 3544695 NMCC_1423 NMCC_1424 ackA1   TRUE 0.513 60.000 0.000 NA   NA
 3544698 3544699 NMCC_1427 NMCC_1428   slyD FALSE 0.330 87.000 0.000 1.000 N NA
 3544700 3544701 NMCC_1429 NMCC_1430     TRUE 0.672 -235.000 0.000 NA   NA
 3544701 3544702 NMCC_1430 NMCC_1431     TRUE 0.515 58.000 0.000 NA   NA
 3544703 3544704 NMCC_1432 NMCC_1433 smpB rfaF FALSE 0.331 55.000 0.000 1.000 N NA
 3544704 3544705 NMCC_1433 NMCC_1434 rfaF   TRUE 0.658 33.000 0.000 NA   NA
 3544705 3544706 NMCC_1434 NMCC_1435     FALSE 0.335 195.000 0.000 NA   NA
 3544706 3544707 NMCC_1435 NMCC_1436     FALSE 0.341 191.000 0.000 NA   NA
 3544707 3544708 NMCC_1436 NMCC_1437     FALSE 0.142 535.000 0.000 NA   NA
 3544708 3544709 NMCC_1437 NMCC_1438   dapE FALSE 0.190 372.000 0.000 NA   NA
 3544709 3544710 NMCC_1438 NMCC_1439 dapE   FALSE 0.472 114.000 0.000 NA   NA
 3544710 3544711 NMCC_1439 NMCC_1440     TRUE 0.643 34.000 0.000 NA   NA
 3544711 3544712 NMCC_1440 NMCC_1441     TRUE 0.506 96.000 0.000 NA   NA
 3544712 3544713 NMCC_1441 NMCC_1442     TRUE 0.879 -3.000 0.000 NA   NA
 3544713 3544714 NMCC_1442 NMCC_1443     FALSE 0.385 144.000 0.000 NA   NA
 3544715 3544716 NMCC_1444 NMCC_1445 secA dnaG FALSE 0.149 243.000 0.000 1.000 N NA
 3544716 3544717 NMCC_1445 NMCC_1446 dnaG rpoD TRUE 0.848 187.000 0.299 1.000 N NA
 3544717 3544718 NMCC_1446 NMCC_1447 rpoD   FALSE 0.374 168.000 0.000 NA   NA
 3544718 3544719 NMCC_1447 NMCC_1448     FALSE 0.362 175.000 0.000 NA   NA
 3544719 3544720 NMCC_1448 NMCC_1449     TRUE 0.515 75.000 0.000 NA   NA
 3544720 3544721 NMCC_1449 NMCC_1450     TRUE 0.719 -39.000 0.000 NA   NA
 3544721 3544722 NMCC_1450 NMCC_1451     FALSE 0.133 564.000 0.000 NA   NA
 3544723 3544724 NMCC_1452 NMCC_1453 lbpA lbpB TRUE 0.873 -3.000 0.000 1.000   NA
 3544726 3544727 NMCC_1455 NMCC_1456   pyrG FALSE 0.291 228.000 0.000 NA   NA
 3544727 3544728 NMCC_1456 NMCC_1457 pyrG fadD2 FALSE 0.293 112.000 0.000 1.000 N NA
 3544728 3544729 NMCC_1457 NMCC_1458 fadD2 trmU FALSE 0.324 71.000 0.000 1.000 N NA
 3544729 3544730 NMCC_1458 NMCC_1459 trmU   FALSE 0.292 225.000 0.000 NA   NA
 3544730 3544731 NMCC_1459 NMCC_1460   dgk FALSE 0.468 115.000 0.000 NA   NA
 3544731 3544732 NMCC_1460 NMCC_1461 dgk gshB FALSE 0.111 312.000 0.000 1.000 N NA
 3544732 3544733 NMCC_1461 NMCC_1462 gshB glnS TRUE 0.858 93.000 0.000 0.086 Y NA
 3544733 3544734 NMCC_1462 NMCC_1463 glnS glpR FALSE 0.127 274.000 0.000 1.000 N NA
 3544734 3544735 NMCC_1463 NMCC_1464 glpR   TRUE 0.583 43.000 0.000 NA   NA
 3544735 3544736 NMCC_1464 NMCC_1465     FALSE 0.384 149.000 0.000 NA   NA
 3544736 3544737 NMCC_1465 NMCC_1466     FALSE 0.166 419.000 0.000 NA   NA
 3544737 3544738 NMCC_1466 NMCC_1467     TRUE 0.824 16.000 0.000 NA   NA
 3544738 3544739 NMCC_1467 NMCC_1468     FALSE 0.455 118.000 0.000 NA   NA
 3544739 3544740 NMCC_1468 NMCC_1469   purN TRUE 0.793 19.000 0.000 NA   NA
 3544740 3544741 NMCC_1469 NMCC_1470 purN   TRUE 0.756 11.000 0.000 1.000 N NA
 3544741 3544742 NMCC_1470 NMCC_1471   holC FALSE 0.212 169.000 0.000 1.000 N NA
 3544742 3544743 NMCC_1471 NMCC_1473 holC pepA TRUE 0.966 75.000 0.494 1.000 N NA
 3544744 3544745 NMCC_1472 NMCC_1474     TRUE 0.999 -3.000 0.631 0.047   NA
 3544745 3544746 NMCC_1474 NMCC_1475   acnB FALSE 0.215 300.000 0.000 1.000   NA
 3544746 3544747 NMCC_1475 NMCC_1476 acnB argF FALSE 0.222 142.000 0.000 1.000 N NA
 3544748 3544749 NMCC_1477 NMCC_1478 ilvC   TRUE 0.508 80.000 0.000 1.000   NA
 3544749 3544750 NMCC_1478 NMCC_1479   ilvH TRUE 0.502 67.000 0.000 1.000   NA
 3544750 3544751 NMCC_1479 NMCC_1480 ilvH ilvI TRUE 0.999 11.000 0.371 0.001 Y NA
 3544751 3544752 NMCC_1480 NMCC_1481 ilvI   FALSE 0.120 759.000 0.000 NA   NA
 3544753 3544754 NMCC_1482 NMCC_1483   hisG TRUE 0.875 10.000 0.000 1.000   NA
 3544754 3544755 NMCC_1483 NMCC_1484 hisG   TRUE 0.490 104.000 0.000 NA   NA
 3544755 3544756 NMCC_1484 NMCC_1485   hisD TRUE 0.879 -3.000 0.000 NA   NA
 3544756 3544757 NMCC_1485 NMCC_1486 hisD hisC TRUE 0.977 46.000 0.165 0.005 Y NA
 3544757 3544758 NMCC_1486 NMCC_1487 hisC hisB TRUE 0.983 180.000 0.341 0.005 Y NA
 3544758 3544759 NMCC_1487 NMCC_1488 hisB   FALSE 0.319 95.000 0.000 1.000 N NA
 3544759 3544760 NMCC_1488 NMCC_1489     FALSE 0.124 278.000 0.000 1.000 N NA
 3544760 3544761 NMCC_1489 NMCC_1490     TRUE 0.855 12.000 0.000 1.000   NA
 3544762 3544763 NMCC_1491 NMCC_1492 sohB   TRUE 0.490 104.000 0.000 NA   NA
 3544763 3544764 NMCC_1492 NMCC_1493     TRUE 0.495 101.000 0.000 NA   NA
 3544764 3544765 NMCC_1493 NMCC_1494     TRUE 0.729 26.000 0.000 NA   NA
 3544765 3544766 NMCC_1494 NMCC_1495     TRUE 0.758 22.000 0.000 NA   NA
 3544766 3544767 NMCC_1495 NMCC_1496     TRUE 0.744 24.000 0.000 NA   NA
 3544767 3544768 NMCC_1496 NMCC_1497     TRUE 0.729 26.000 0.000 NA   NA
 3544768 3544769 NMCC_1497 NMCC_1498   pgsA TRUE 0.524 80.000 0.000 NA   NA
 3544769 3544770 NMCC_1498 NMCC_1499 pgsA   TRUE 0.523 55.000 0.000 NA   NA
 3544770 3544771 NMCC_1499 NMCC_1500     FALSE 0.205 331.000 0.000 NA   NA
 3544772 3544773 NMCC_1501 NMCC_1502 mtrA   TRUE 0.779 20.000 0.000 NA   NA
 3544773 3544774 NMCC_1502 NMCC_1503     FALSE 0.407 129.000 0.000 NA   NA
 3544776 3544777 NMCC_1505 NMCC_1506 alaS   TRUE 0.702 29.000 0.000 NA   NA
 3544777 3544778 NMCC_1506 NMCC_1507     FALSE 0.098 1324.000 0.000 NA   NA
 3544778 3544779 NMCC_1507 NMCC_1508     FALSE 0.130 597.000 0.000 NA   NA
 3544781 3544782 NMCC_1510 NMCC_1511 parC   TRUE 0.796 20.000 0.003 0.085 N NA
 3544782 3544783 NMCC_1511 NMCC_1512     TRUE 0.524 52.000 0.000 1.000   NA
 3544783 3544784 NMCC_1512 NMCC_1513     TRUE 0.490 104.000 0.000 NA   NA
 3544785 3544786 NMCC_1514 NMCC_1515   metZ TRUE 0.509 95.000 0.000 NA   NA
 3544786 3544787 NMCC_1515 NMCC_1516 metZ   FALSE 0.227 299.000 0.000 NA   NA
 3544788 3544789 NMCC_1517 NMCC_1518   hisJ TRUE 0.540 52.000 0.000 NA   NA
 3544789 3544790 NMCC_1518 NMCC_1519 hisJ fumA FALSE 0.113 307.000 0.000 1.000 N NA
 3544790 3544791 NMCC_1519 NMCC_1520 fumA trkA FALSE 0.327 56.000 0.000 1.000 N NA
 3544793 3544794 NMCC_1522 NMCC_1523     FALSE 0.148 506.000 0.000 NA   NA
 3544794 3544795 NMCC_1523 NMCC_1524     TRUE 0.520 88.000 0.000 NA   NA
 3544795 3544796 NMCC_1524 NMCC_1525   thiD FALSE 0.118 769.000 0.000 NA   NA
 3544798 3544799 NMCC_1527 NMCC_1528 rnhA   FALSE 0.045 1622.000 0.000 1.000 N NA
 3544799 3544800 NMCC_1528 NMCC_1529     FALSE 0.424 40.000 0.000 NA N NA
 3544801 3544802 NMCC_1530 NMCC_1531 gpxA nor FALSE 0.290 113.000 0.000 1.000 N NA
 3544802 3544803 NMCC_1531 NMCC_1532 nor   FALSE 0.415 38.000 0.000 1.000 N NA
 3544804 3544805 NMCC_1533 NMCC_1534     TRUE 0.629 407.000 0.000 0.004 Y NA
 3544805 3544806 NMCC_1534 NMCC_1535     TRUE 0.683 325.000 0.000 0.004 Y NA
 3544806 3544807 NMCC_1535 NMCC_1536     FALSE 0.058 749.000 0.000 1.000 N NA
 3544808 3544809 NMCC_1537 NMCC_1538     TRUE 0.501 76.000 0.000 1.000   NA
 3544809 3544810 NMCC_1538 NMCC_1539     TRUE 0.515 70.000 0.000 NA   NA
 3544810 3544811 NMCC_1539 NMCC_1540   serC TRUE 0.896 0.000 0.000 NA   NA
 3544812 3544813 NMCC_1541 NMCC_1542   nusA TRUE 0.994 40.000 0.759 NA   NA
 3544813 3544814 NMCC_1542 NMCC_1543 nusA infB TRUE 0.989 12.000 0.342 1.000 N NA
 3544815 3544816 NMCC_1544 NMCC_1545     TRUE 0.996 74.000 0.904 NA   NA
 3544820 3544821 NMCC_1549 NMCC_1550 dsbB   TRUE 0.658 33.000 0.000 NA   NA
 3544821 3544822 NMCC_1550 NMCC_1551   lrp FALSE 0.218 309.000 0.000 NA   NA
 3544824 3544825 NMCC_1553 NMCC_1554     FALSE 0.386 143.000 0.000 NA   NA
 3544825 3544826 NMCC_1554 NMCC_1555     TRUE 0.997 15.000 0.569 NA   NA
 3544826 3544827 NMCC_1555 NMCC_1556     FALSE 0.419 126.000 0.000 NA   NA
 3544830 3544831 NMCC_1559 NMCC_1560     FALSE 0.478 112.000 0.000 NA   NA
 3544832 3544833 NMCC_1561 NMCC_1563     FALSE 0.188 379.000 0.000 NA   NA
 3544833 3544834 NMCC_1563 NMCC_1564     FALSE 0.173 407.000 0.000 NA   NA
 3544834 3544835 NMCC_1564 NMCC_1565     TRUE 0.901 6.000 0.000 NA   NA
 3544835 3544836 NMCC_1565 NMCC_1566     FALSE 0.433 123.000 0.000 NA   NA
 3544837 3544838 NMCC_1567 NMCC_1568     FALSE 0.224 303.000 0.000 NA   NA
 3544839 3544840 NMCC_1569 NMCC_1570 spoT rpoZ TRUE 0.971 93.000 0.291 1.000 Y NA
 3544840 3544841 NMCC_1570 NMCC_1571 rpoZ gmk TRUE 0.963 59.000 0.471 1.000 N NA
 3544844 3544845 NMCC_1574 NMCC_1575     FALSE 0.380 161.000 0.000 NA   NA
 3544845 3544846 NMCC_1575 NMCC_1576     FALSE 0.214 314.000 0.000 NA   NA
 3544847 3544848 NMCC_1577 NMCC_1578     TRUE 0.969 -3.000 0.116 NA   NA
 3544848 3544849 NMCC_1578 NMCC_1579   hmbR FALSE 0.195 360.000 0.000 NA   NA
 3544849 3544850 NMCC_1579 NMCC_1580 hmbR hemO FALSE 0.362 175.000 0.000 NA   NA
 3544851 3544852 NMCC_1581 NMCC_1582   pqiB FALSE 0.386 143.000 0.000 NA   NA
 3544852 3544853 NMCC_1582 NMCC_1583 pqiB   TRUE 0.998 0.000 0.531 NA   NA
 3544853 3544854 NMCC_1583 NMCC_1584   tag TRUE 0.904 4.000 0.000 NA   NA
 3544854 3544855 NMCC_1584 NMCC_1585 tag   FALSE 0.383 44.000 0.000 1.000 N NA
 3544855 3544856 NMCC_1585 NMCC_1586     FALSE 0.208 326.000 0.000 NA   NA
 3544856 3544857 NMCC_1586 NMCC_1587   gcvP TRUE 0.677 31.000 0.000 NA   NA
 3544857 3544858 NMCC_1587 NMCC_1588 gcvP   TRUE 0.514 71.000 0.000 NA   NA
 3544861 3544862 NMCC_1591 NMCC_1592 tyrB trmA TRUE 0.860 6.000 0.012 1.000 N NA
 3544863 3544864 NMCC_1593 NMCC_1594 aroC   TRUE 0.517 91.000 0.000 NA   NA
 3544865 3544866 NMCC_1595 NMCC_1596 parE   TRUE 0.743 67.000 0.005 1.000 Y NA
 3544868 3544869 NMCC_1598 NMCC_1599 ldhA prfA FALSE 0.262 122.000 0.000 1.000 N NA
 3544869 3544870 NMCC_1599 NMCC_1600 prfA   FALSE 0.348 90.000 0.000 NA N NA
 3544870 3544871 NMCC_1600 NMCC_1601   ans FALSE 0.424 40.000 0.000 NA N NA
 3544871 3544872 NMCC_1601 NMCC_1602 ans dedA TRUE 0.513 60.000 0.000 NA   NA
 3544872 3544873 NMCC_1602 NMCC_1603 dedA manB FALSE 0.344 189.000 0.000 NA   NA
 3544873 3544874 NMCC_1603 NMCC_1604 manB folP TRUE 0.847 130.000 0.260 1.000 N NA
 3544874 3544875 NMCC_1604 NMCC_1605 folP aroX FALSE 0.106 326.000 0.000 1.000 N NA
 3544877 3544878 NMCC_1607 NMCC_1608     FALSE 0.475 113.000 0.000 NA   NA
 3544878 3544879 NMCC_1608 NMCC_1609     TRUE 0.899 7.000 0.000 NA   NA
 3544879 3544880 NMCC_1609 NMCC_1610     TRUE 0.515 92.000 0.000 NA   NA
 3544880 3544881 NMCC_1610 NMCC_1611     TRUE 0.519 77.000 0.000 NA   NA
 3544882 3544883 NMCC_1612 NMCC_1613   fabF2 FALSE 0.390 47.000 0.000 NA N NA
 3544883 3544884 NMCC_1613 NMCC_1614 fabF2   TRUE 0.530 54.000 0.000 NA   NA
 3544884 3544885 NMCC_1614 NMCC_1615   lgtF TRUE 0.513 93.000 0.000 NA   NA
 3544885 3544886 NMCC_1615 NMCC_1616 lgtF rfaK TRUE 0.965 1.000 0.000 NA Y NA
 3544886 3544887 NMCC_1616 NMCC_1617 rfaK   FALSE 0.368 153.000 0.000 1.000   NA
 3544888 3544889 NMCC_1618 NMCC_1619     TRUE 0.785 -19.000 0.000 NA   NA
 3544889 3544890 NMCC_1619 NMCC_1620   thyA TRUE 0.890 9.000 0.000 NA   NA
 3544891 3544892 NMCC_1621 NMCC_1622 gdhA   FALSE 0.135 560.000 0.000 NA   NA
 3544894 3544895 NMCC_1624 NMCC_1625     TRUE 0.873 -3.000 0.000 1.000   NA
 3544896 3544897 NMCC_1626 NMCC_1627 mtrE mtrD TRUE 0.974 55.000 0.368 0.021 N NA
 3544897 3544898 NMCC_1627 NMCC_1628 mtrD mtrC TRUE 0.941 12.000 0.105 1.000 N NA
 3544902 3544903 NMCC_1632 NMCC_1633 recC   FALSE 0.279 225.000 0.000 1.000   NA
 3544903 3544904 NMCC_1633 NMCC_1634     TRUE 0.536 202.000 0.000 0.037   NA
 3544904 3544905 NMCC_1634 NMCC_1635   fixP TRUE 0.744 109.000 0.000 0.006   NA
 3544905 3544906 NMCC_1635 NMCC_1636 fixP fixQ TRUE 0.973 24.000 0.182 0.002 N NA
 3544906 3544907 NMCC_1636 NMCC_1637 fixQ fixO TRUE 0.991 5.000 0.167 0.002 N NA
 3544907 3544908 NMCC_1637 NMCC_1638 fixO fixN TRUE 0.995 27.000 0.525 0.002 N NA
 3544909 3544910 NMCC_1639 NMCC_1640     TRUE 0.517 65.000 0.000 NA   NA
 3544911 3544912 NMCC_1641 NMCC_1642 exbD exbB TRUE 0.999 3.000 0.500 0.028 Y NA
 3544912 3544913 NMCC_1642 NMCC_1643 exbB tonB TRUE 0.770 36.000 0.000 0.006 N NA
 3544915 3544916 NMCC_1645 NMCC_1646     FALSE 0.376 166.000 0.000 NA   NA
 3544916 3544917 NMCC_1646 NMCC_1647   grxB FALSE 0.211 322.000 0.000 NA   NA
 3544918 3544919 NMCC_1648 NMCC_1649 relA   FALSE 0.068 555.000 0.000 1.000 N NA
 3544920 3544921 NMCC_1650 NMCC_1651 natC natD TRUE 0.866 69.000 0.000 0.046 Y NA
 3544922 3544923 NMCC_1652 NMCC_1653     TRUE 0.832 -9.000 0.000 NA   NA
 3544923 3544924 NMCC_1653 NMCC_1654     TRUE 0.900 1.000 0.000 NA   NA
 3544924 3544925 NMCC_1654 NMCC_1655     FALSE 0.178 396.000 0.000 NA   NA
 3544925 3544926 NMCC_1655 NMCC_1656     TRUE 0.832 -9.000 0.000 NA   NA
 3544926 3544927 NMCC_1656 NMCC_1657     TRUE 0.996 5.000 0.400 NA   NA
 3544927 3544928 NMCC_1657 NMCC_1658     TRUE 0.895 8.000 0.000 NA   NA
 3544928 3544929 NMCC_1658 NMCC_1659     TRUE 0.899 7.000 0.000 NA   NA
 3544929 3544930 NMCC_1659 NMCC_1660     FALSE 0.411 128.000 0.000 NA   NA
 3544930 3544931 NMCC_1660 NMCC_1661     TRUE 0.785 -19.000 0.000 NA   NA
 3544932 3544933 NMCC_1662 NMCC_1663     TRUE 0.513 93.000 0.000 NA   NA
 3544933 3544934 NMCC_1663 NMCC_1664     TRUE 0.941 200.000 0.444 NA   NA
 3544934 3544935 NMCC_1664 NMCC_1665     TRUE 0.999 2.000 0.667 NA   NA
 3544935 3544936 NMCC_1665 NMCC_1666     TRUE 0.863 12.000 0.000 NA   NA
 3544936 3544937 NMCC_1666 NMCC_1667     TRUE 0.506 96.000 0.000 NA   NA
 3544937 3544938 NMCC_1667 NMCC_1668   bioC FALSE 0.239 265.000 0.000 1.000   NA
 3544938 3544939 NMCC_1668 NMCC_1669 bioC   TRUE 0.892 -24.000 0.065 NA   NA
 3544939 3544940 NMCC_1669 NMCC_1670   bioF TRUE 0.995 10.000 0.389 NA   NA
 3544942 3544943 NMCC_1672 NMCC_1673   speB FALSE 0.182 198.000 0.000 1.000 N NA
 3544943 3544944 NMCC_1673 NMCC_1674 speB speA TRUE 0.795 99.000 0.015 1.000 Y NA
 3544944 3544945 NMCC_1674 NMCC_1675 speA   FALSE 0.375 167.000 0.000 NA   NA
 3544945 3544946 NMCC_1675 NMCC_1676   aspS TRUE 0.525 82.000 0.000 NA   NA
 3544946 3544947 NMCC_1676 NMCC_1677 aspS   TRUE 0.724 58.000 0.057 NA   NA
 3544947 3544948 NMCC_1677 NMCC_1678     FALSE 0.314 212.000 0.000 NA   NA
 3544948 3544949 NMCC_1678 NMCC_1679   rpsT FALSE 0.199 182.000 0.000 1.000 N NA
 3544951 3544952 NMCC_1681 NMCC_1682 tbpA tbpB TRUE 0.990 87.000 0.667 1.000   NA
 3544954 3544955 NMCC_1684 NMCC_1685   glr FALSE 0.056 797.000 0.000 1.000 N NA
 3544956 3544957 NMCC_1686 NMCC_1687   amiC TRUE 0.949 -3.000 0.063 NA   NA
 3544957 3544958 NMCC_1687 NMCC_1688 amiC   TRUE 0.502 67.000 0.000 1.000   NA
 3544959 3544960 NMCC_1689 NMCC_1690     TRUE 0.552 49.000 0.000 NA   NA
 3544960 3544961 NMCC_1690 NMCC_1691     TRUE 0.846 -7.000 0.000 NA   NA
 3544961 3544962 NMCC_1691 NMCC_1692   acpS FALSE 0.333 82.000 0.000 1.000 N NA
 3544962 3544963 NMCC_1692 NMCC_1693 acpS   FALSE 0.315 200.000 0.000 1.000   NA
 3544963 3544964 NMCC_1693 NMCC_1694     TRUE 0.875 10.000 0.000 1.000   NA
 3544964 3544965 NMCC_1694 NMCC_1695   pdxJ FALSE 0.368 152.000 0.000 1.000   NA
 3544965 3544966 NMCC_1695 NMCC_1696 pdxJ recO TRUE 0.921 24.000 0.166 1.000 N NA
 3544966 3544967 NMCC_1696 NMCC_1697 recO pheA TRUE 0.486 31.000 0.000 1.000 N NA
 3544967 3544968 NMCC_1697 NMCC_1698 pheA   FALSE 0.329 78.000 0.000 1.000 N NA
 3544968 3544969 NMCC_1698 NMCC_1699     FALSE 0.318 209.000 0.000 NA   NA
 3544969 3544970 NMCC_1699 NMCC_1700     TRUE 0.744 24.000 0.000 NA   NA
 3544970 3544971 NMCC_1700 NMCC_1701     FALSE 0.063 605.000 0.000 1.000 N NA
 3544971 3544972 NMCC_1701 NMCC_1702     FALSE 0.415 127.000 0.000 NA   NA
 3544973 3544974 NMCC_1703 NMCC_1704     FALSE 0.162 434.000 0.000 NA   NA
 3544977 3544978 NMCC_1707 NMCC_1708     TRUE 0.573 45.000 0.000 NA   NA
 3544980 3544981 NMCC_1710 NMCC_1711   ackA2 FALSE 0.108 358.000 0.000 NA N NA
 3544981 3544982 NMCC_1711 NMCC_1712 ackA2 prpF FALSE 0.168 414.000 0.000 NA   NA
 3544982 3544983 NMCC_1712 NMCC_1713 prpF acnA TRUE 0.937 803.000 0.733 NA   NA
 3544983 3544984 NMCC_1713 NMCC_1714 acnA prpC TRUE 0.762 2259.000 0.289 1.000 Y NA
 3544984 3544985 NMCC_1714 NMCC_1715 prpC prpB TRUE 0.970 86.000 0.502 1.000 N NA
 3544985 3544986 NMCC_1715 NMCC_1716 prpB   FALSE 0.111 782.000 0.000 1.000   NA
 3544986 3544987 NMCC_1716 NMCC_1717   ftsZ FALSE 0.364 163.000 0.000 1.000   NA
 3544987 3544988 NMCC_1717 NMCC_1718 ftsZ ftsA TRUE 0.983 119.000 0.460 1.000 Y NA
 3544988 3544989 NMCC_1718 NMCC_1719 ftsA ftsQ TRUE 0.953 86.000 0.389 NA N NA
 3544989 3544990 NMCC_1719 NMCC_1720 ftsQ ddlB TRUE 0.996 -10.000 0.372 NA Y NA
 3544990 3544991 NMCC_1720 NMCC_1721 ddlB murC TRUE 0.950 143.000 0.153 0.005 Y NA
 3544991 3544992 NMCC_1721 NMCC_1722 murC murG TRUE 0.949 157.000 0.283 1.000 Y NA
 3544992 3544993 NMCC_1722 NMCC_1723 murG ftsW TRUE 0.998 4.000 0.647 1.000 N NA
 3544993 3544994 NMCC_1723 NMCC_1724 ftsW murD TRUE 0.948 126.000 0.297 0.005 N NA
 3544994 3544995 NMCC_1724 NMCC_1725 murD   TRUE 0.509 85.000 0.000 1.000   NA
 3544995 3544996 NMCC_1725 NMCC_1726   mraY FALSE 0.452 115.000 0.000 1.000   NA
 3544996 3544997 NMCC_1726 NMCC_1727 mraY   FALSE 0.273 247.000 0.000 NA   NA
 3544997 3544998 NMCC_1727 NMCC_1728   murF TRUE 0.903 3.000 0.000 NA   NA
 3544998 3544999 NMCC_1728 NMCC_1729 murF dca TRUE 0.499 92.000 0.000 1.000   NA
 3544999 3545000 NMCC_1729 NMCC_1730 dca murE FALSE 0.152 435.000 0.000 1.000   NA
 3545000 3545001 NMCC_1730 NMCC_1731 murE penA TRUE 0.894 25.000 0.008 1.000 Y NA
 3545001 3545002 NMCC_1731 NMCC_1732 penA   FALSE 0.366 157.000 0.000 1.000   NA
 3545002 3545003 NMCC_1732 NMCC_1733   mraW TRUE 0.823 -9.000 0.000 1.000   NA
 3545003 3545004 NMCC_1733 NMCC_1734 mraW mraZ TRUE 0.977 189.000 0.635 NA   NA
 3545005 3545006 NMCC_1735 NMCC_1736     FALSE 0.400 132.000 0.000 NA   NA
 3545006 3545007 NMCC_1736 NMCC_1737     TRUE 0.895 8.000 0.000 NA   NA
 3545008 3545009 NMCC_1738 NMCC_1739 bacA dsbA1 TRUE 0.643 33.000 0.000 1.000   NA
 3545009 3545010 NMCC_1739 NMCC_1740 dsbA1   TRUE 0.903 3.000 0.000 NA   NA
 3545010 3545011 NMCC_1740 NMCC_1741   comM FALSE 0.330 100.000 0.000 NA N NA
 3545011 3545012 NMCC_1741 NMCC_1742 comM   TRUE 0.527 53.000 0.007 NA   NA
 3545013 3545014 NMCC_1743 NMCC_1744 putP putA FALSE 0.287 251.000 0.040 1.000 N NA
 3545015 3545016 NMCC_1745 NMCC_1746   xthA FALSE 0.424 942.000 0.000 0.054 Y NA
 3545016 3545017 NMCC_1746 NMCC_1747 xthA   TRUE 0.743 54.000 0.000 0.026   NA
 3545017 3545018 NMCC_1747 NMCC_1748   nadC FALSE 0.145 468.000 0.000 1.000   NA
 3545018 3545019 NMCC_1748 NMCC_1749 nadC   TRUE 0.544 76.000 0.010 1.000   NA
 3545020 3545021 NMCC_1750 NMCC_1751 nadA nadB TRUE 0.984 52.000 0.210 0.003 Y NA
 3545022 3545023 NMCC_1752 NMCC_1753 pgmB mapA TRUE 0.974 13.000 0.179 1.000   NA
 3545023 3545024 NMCC_1753 NMCC_1754 mapA galM TRUE 0.784 234.000 0.000 0.001 Y NA
 3545024 3545025 NMCC_1754 NMCC_1755 galM   TRUE 0.996 4.000 0.250 NA Y NA
 3545027 3545028 NMCC_1757 NMCC_1758 pgpA thiL TRUE 0.716 -7.000 0.008 1.000 N NA
 3545028 3545029 NMCC_1758 NMCC_1759 thiL rmpM FALSE 0.051 956.000 0.000 1.000 N NA
 3545034 3545035 NMCC_1763 NMCC_1765     TRUE 0.503 98.000 0.000 NA   NA
 3545035 3545036 NMCC_1765 NMCC_1766   mafA2 FALSE 0.452 119.000 0.000 NA   NA
 3545036 3545037 NMCC_1766 NMCC_1767 mafA2 mafB2 TRUE 0.904 4.000 0.000 NA   NA
 3545037 3545038 NMCC_1767 NMCC_1768 mafB2   TRUE 0.835 15.000 0.000 NA   NA
 3545038 3545039 NMCC_1768 NMCC_1769     FALSE 0.183 389.000 0.000 NA   NA
 3545039 3545040 NMCC_1769 NMCC_1770     TRUE 0.879 -3.000 0.000 NA   NA
 3545040 3545041 NMCC_1770 NMCC_1771     FALSE 0.271 248.000 0.000 NA   NA
 3545041 3545042 NMCC_1771 NMCC_1772     FALSE 0.445 121.000 0.000 NA   NA
 3545042 3545043 NMCC_1772 NMCC_1773     FALSE 0.393 136.000 0.000 NA   NA
 3545043 3545044 NMCC_1773 NMCC_1774     TRUE 0.764 -22.000 0.000 NA   NA
 3545044 3545045 NMCC_1774 NMCC_1775     FALSE 0.316 210.000 0.000 NA   NA
 3545045 3545046 NMCC_1775 NMCC_1776     TRUE 0.517 69.000 0.000 NA   NA
 3545046 3545047 NMCC_1776 NMCC_1777     TRUE 0.516 64.000 0.000 NA   NA
 3545048 3545049 NMCC_1778 NMCC_1779 frpC   TRUE 0.814 17.000 0.000 NA   NA
 3545049 3545050 NMCC_1779 NMCC_1780     FALSE 0.156 449.000 0.000 NA   NA
 3545050 3545051 NMCC_1780 NMCC_1781     TRUE 0.879 -3.000 0.000 NA   NA
 3545051 3545052 NMCC_1781 NMCC_1782   glnA FALSE 0.384 148.000 0.000 NA   NA
 3545053 3545054 NMCC_1783 NMCC_1784 aroE mtgA TRUE 0.973 2.000 0.107 1.000   NA
 3545055 3545056 NMCC_1785 NMCC_1786     FALSE 0.341 191.000 0.000 NA   NA
 3545056 3545057 NMCC_1786 NMCC_1787     TRUE 0.982 74.000 0.543 NA   NA
 3545057 3545058 NMCC_1787 NMCC_1788     TRUE 0.979 42.000 0.459 NA   NA
 3545058 3545059 NMCC_1788 NMCC_1789     TRUE 0.998 -3.000 0.617 NA   NA
 3545059 3545060 NMCC_1789 NMCC_1790     TRUE 0.977 128.000 0.598 1.000   NA
 3545061 3545062 NMCC_1791 NMCC_1792 tal   FALSE 0.383 154.000 0.000 NA   NA
 3545062 3545063 NMCC_1792 NMCC_1793   glu TRUE 0.814 17.000 0.000 NA   NA
 3545064 3545065 NMCC_1794 NMCC_1795     TRUE 0.861 31.000 0.000 1.000 Y NA
 3545065 3545066 NMCC_1795 NMCC_1796     TRUE 0.482 110.000 0.000 NA   NA
 3545066 3545067 NMCC_1796 NMCC_1797     TRUE 0.716 -40.000 0.000 NA   NA
 3545067 3545068 NMCC_1797 NMCC_1798     TRUE 0.552 49.000 0.000 NA   NA
 3545068 3545069 NMCC_1798 NMCC_1799     TRUE 0.970 0.000 0.103 NA   NA
 3545069 3545070 NMCC_1799 NMCC_1800   ispZ TRUE 0.981 15.000 0.224 NA   NA
 3545072 3545073 NMCC_1802 NMCC_1803 gloA   TRUE 0.567 24.000 0.000 1.000 N NA
 3545073 3545074 NMCC_1803 NMCC_1804     TRUE 0.968 -28.000 0.229 NA   NA
 3545075 3545076 NMCC_1805 NMCC_1806   ilvE TRUE 0.522 79.000 0.000 NA   NA
 3545077 3545078 NMCC_1807 NMCC_1808 fabI dapD FALSE 0.218 155.000 0.000 1.000 N NA
 3545078 3545079 NMCC_1808 NMCC_1809 dapD pgi2 FALSE 0.173 210.000 0.000 1.000 N NA
 3545080 3545081 NMCC_1810 NMCC_1811 pilG pilD TRUE 0.987 74.000 0.454 1.000 Y NA
 3545081 3545082 NMCC_1811 NMCC_1812 pilD   TRUE 0.965 2.000 0.122 1.000 N NA
 3545082 3545083 NMCC_1812 NMCC_1813     TRUE 0.901 -7.000 0.033 1.000   NA
 3545084 3545085 NMCC_1814 NMCC_1815 pilF   FALSE 0.177 401.000 0.000 NA   NA
 3545085 3545086 NMCC_1815 NMCC_1816     TRUE 0.779 20.000 0.000 NA   NA
 3545086 3545087 NMCC_1816 NMCC_1817     TRUE 0.903 5.000 0.000 NA   NA
 3545088 3545089 NMCC_1818 NMCC_1819 rplU rpmA TRUE 0.999 25.000 0.667 0.021 Y NA
 3545089 3545090 NMCC_1819 NMCC_1820 rpmA   FALSE 0.165 218.000 0.000 1.000 N NA
 3545090 3545091 NMCC_1820 NMCC_1821     TRUE 0.879 -3.000 0.000 NA   NA
 3545092 3545093 NMCC_1822 NMCC_1823 rpmG rpmB TRUE 0.995 28.000 0.332 0.021 Y NA
 3545093 3545094 NMCC_1823 NMCC_1824 rpmB   TRUE 0.514 72.000 0.000 NA   NA
 3545094 3545095 NMCC_1824 NMCC_1825   farB TRUE 0.818 -10.000 0.000 NA   NA
 3545095 3545096 NMCC_1825 NMCC_1826 farB farA TRUE 0.996 24.000 0.667 1.000   NA
 3545097 3545098 NMCC_1827 NMCC_1828     TRUE 0.597 74.000 0.015 NA   NA
 3545101 3545102 NMCC_1831 NMCC_1832 ompU vapA FALSE 0.231 275.000 0.000 1.000   NA
 3545102 3545103 NMCC_1832 NMCC_1834 vapA   FALSE 0.099 1199.000 0.000 NA   NA
 3545104 3545105 NMCC_1833 NMCC_1835     TRUE 0.870 12.000 0.008 NA   NA
 3545106 3545107 NMCC_1836 NMCC_1837 folA aroG TRUE 0.549 -34.000 0.000 1.000 N NA
 3545108 3545109 NMCC_1838 NMCC_1839     FALSE 0.455 118.000 0.000 NA   NA
 3545111 3545112 NMCC_1841 NMCC_1842     FALSE 0.247 271.000 0.000 NA   NA
 3545113 3545114 NMCC_1843 NMCC_1845     FALSE 0.188 379.000 0.000 NA   NA
 3545114 3545115 NMCC_1845 NMCC_1846     FALSE 0.173 407.000 0.000 NA   NA
 3545115 3545116 NMCC_1846 NMCC_1847     TRUE 0.901 6.000 0.000 NA   NA
 3545116 3545117 NMCC_1847 NMCC_1848     FALSE 0.433 123.000 0.000 NA   NA
 3545117 3545118 NMCC_1848 NMCC_1849     FALSE 0.105 990.000 0.000 NA   NA
 3545120 3545121 NMCC_1851 NMCC_1852 dsbA2   FALSE 0.369 171.000 0.000 NA   NA
 3545121 3545122 NMCC_1852 NMCC_1853     FALSE 0.324 203.000 0.000 NA   NA
 3545122 3545123 NMCC_1853 NMCC_1854     FALSE 0.364 174.000 0.000 NA   NA
 3545123 3545124 NMCC_1854 NMCC_1855     TRUE 0.689 30.000 0.000 NA   NA
 3545125 3545126 NMCC_1856 NMCC_1857   phr TRUE 0.671 -10.000 0.000 1.000 N NA
 3545126 3545127 NMCC_1857 NMCC_1858 phr dinG FALSE 0.393 395.000 0.000 1.000 Y NA
 3545127 3545128 NMCC_1858 NMCC_1859 dinG   FALSE 0.382 155.000 0.000 NA   NA
 3545129 3545130 NMCC_1860 NMCC_1861   purB FALSE 0.332 80.000 0.000 1.000 N NA
 3545130 3545131 NMCC_1861 NMCC_1862 purB   TRUE 0.514 72.000 0.000 NA   NA
 3545133 3545134 NMCC_1864 NMCC_1865 surA ostA TRUE 0.798 105.000 0.168 1.000 N NA
 3545137 3545138 NMCC_1868 NMCC_1869     FALSE 0.398 133.000 0.000 NA   NA
 3545138 3545139 NMCC_1869 NMCC_1870   trpC TRUE 0.883 8.000 0.005 NA   NA
 3545139 3545140 NMCC_1870 NMCC_1871 trpC recQ FALSE 0.199 182.000 0.000 1.000 N NA
 3545141 3545142 NMCC_1872 NMCC_1873     TRUE 0.669 32.000 0.000 NA   NA
 3545142 3545143 NMCC_1873 NMCC_1874     FALSE 0.148 508.000 0.000 NA   NA
 3545143 3545144 NMCC_1874 NMCC_1875     TRUE 0.917 2.000 0.010 NA   NA
 3545145 3545146 NMCC_1876 NMCC_1877     TRUE 0.680 56.000 0.045 1.000   NA
 3545146 3545147 NMCC_1877 NMCC_1878     FALSE 0.275 130.000 0.008 NA N NA
 3545147 3545148 NMCC_1878 NMCC_1879     TRUE 0.530 54.000 0.000 NA   NA
 3545148 3545149 NMCC_1879 NMCC_1880   ruvA TRUE 0.509 82.000 0.000 1.000   NA
 3545149 3545150 NMCC_1880 NMCC_1881 ruvA   TRUE 0.896 0.000 0.000 NA   NA
 3545150 3545151 NMCC_1881 NMCC_1882     TRUE 0.785 -19.000 0.000 NA   NA
 3545151 3545152 NMCC_1882 NMCC_1883   engC TRUE 0.897 5.000 0.000 1.000   NA
 3545152 3545153 NMCC_1883 NMCC_1884 engC xseB FALSE 0.279 225.000 0.000 1.000   NA
 3545153 3545154 NMCC_1884 NMCC_1885 xseB ispA TRUE 0.945 -16.000 0.177 1.000 N NA
 3545155 3545156 NMCC_1886 NMCC_1887   nuoN TRUE 0.971 19.000 0.202 NA   NA
 3545156 3545157 NMCC_1887 NMCC_1888 nuoN nuoM TRUE 0.999 10.000 0.340 0.002 Y NA
 3545157 3545158 NMCC_1888 NMCC_1889 nuoM   TRUE 0.498 100.000 0.000 NA   NA
 3545158 3545159 NMCC_1889 NMCC_1890     TRUE 0.515 75.000 0.000 NA   NA
 3545159 3545160 NMCC_1890 NMCC_1891   nuoL FALSE 0.327 56.000 0.000 1.000 N NA
 3545160 3545161 NMCC_1891 NMCC_1892 nuoL   TRUE 0.552 49.000 0.000 NA   NA
 3545161 3545162 NMCC_1892 NMCC_1893     FALSE 0.415 127.000 0.000 NA   NA
 3545162 3545163 NMCC_1893 NMCC_1894   nuoK FALSE 0.325 64.000 0.000 1.000 N NA
 3545163 3545164 NMCC_1894 NMCC_1895 nuoK nuoJ TRUE 0.999 -3.000 0.484 0.003 Y NA
 3545164 3545165 NMCC_1895 NMCC_1896 nuoJ nuoI TRUE 0.999 12.000 0.442 0.007 Y NA
 3545165 3545166 NMCC_1896 NMCC_1897 nuoI nuoH TRUE 0.995 81.000 0.500 0.007 Y NA
 3545166 3545167 NMCC_1897 NMCC_1898 nuoH nuoG TRUE 1.000 3.000 0.515 0.007 Y NA
 3545167 3545168 NMCC_1898 NMCC_1899 nuoG   FALSE 0.122 282.000 0.000 1.000 N NA
 3545168 3545169 NMCC_1899 NMCC_1900   nuoF FALSE 0.064 585.000 0.000 1.000 N NA
 3545169 3545170 NMCC_1900 NMCC_1901 nuoF nuoE TRUE 0.959 389.000 0.343 0.007 Y NA
 3545170 3545171 NMCC_1901 NMCC_1902 nuoE nuoD TRUE 0.946 557.000 0.355 0.007 Y NA
 3545171 3545172 NMCC_1902 NMCC_1903 nuoD nuoC TRUE 0.999 -10.000 0.483 0.007 Y NA
 3545172 3545173 NMCC_1903 NMCC_1904 nuoC nuoB TRUE 0.988 120.000 0.328 0.003 Y NA
 3545173 3545174 NMCC_1904 NMCC_1905 nuoB nuoA TRUE 0.999 -9.000 0.507 0.003 Y NA
 3545174 3545175 NMCC_1905 NMCC_1906 nuoA   FALSE 0.077 451.000 0.000 1.000 N NA
 3545175 3545176 NMCC_1906 NMCC_1907     TRUE 0.809 -10.000 0.000 1.000   NA
 3545176 3545177 NMCC_1907 NMCC_1908     FALSE 0.383 154.000 0.000 NA   NA
 3545178 3545179 NMCC_1909 NMCC_1910     TRUE 0.498 100.000 0.000 NA   NA
 3545180 3545181 NMCC_1911 NMCC_1912   uvrD FALSE 0.196 357.000 0.000 NA   NA
 3545182 3545183 NMCC_1913 NMCC_1914     TRUE 0.519 56.000 0.000 NA   NA
 3545183 3545184 NMCC_1914 NMCC_1915     TRUE 0.984 -3.000 0.086 NA Y NA
 3545184 3545185 NMCC_1915 NMCC_1916     TRUE 0.899 -13.000 0.046 NA   NA
 3545185 3545186 NMCC_1916 NMCC_1917     TRUE 0.613 129.000 0.055 1.000   NA
 3545186 3545187 NMCC_1917 NMCC_1918     TRUE 0.485 108.000 0.000 NA   NA
 3545187 3545188 NMCC_1918 NMCC_1919     FALSE 0.249 266.000 0.000 NA   NA
 3545189 3545190 NMCC_1920 NMCC_1921 glnE   FALSE 0.304 218.000 0.000 NA   NA
 3545190 3545191 NMCC_1921 NMCC_1922     TRUE 0.845 14.000 0.000 NA   NA
 3545191 3545192 NMCC_1922 NMCC_1923     TRUE 0.713 28.000 0.000 NA   NA
 3545192 3545193 NMCC_1923 NMCC_1924   pyrD TRUE 0.818 -10.000 0.000 NA   NA
 3545194 3545195 NMCC_1925 NMCC_1926 acpP fabF1 TRUE 0.967 156.000 0.346 1.000 Y NA
 3545195 3545196 NMCC_1926 NMCC_1927 fabF1 pglA FALSE 0.344 305.000 0.000 0.012 N NA
 3545198 3545199 NMCC_1929 NMCC_1930 katA   FALSE 0.103 1068.000 0.000 NA   NA
 3545200 3545201 NMCC_1931 NMCC_1932 prlC   FALSE 0.329 88.000 0.000 1.000 N NA
 3545202 3545203 NMCC_1933 NMCC_1934 gyrB sdaA TRUE 0.500 30.000 0.000 1.000 N NA
 3545203 3545204 NMCC_1934 NMCC_1934a sdaA   FALSE 0.139 547.000 0.000 NA   NA
 3545205 3545206 NMCC_1935 NMCC_1936     TRUE 0.658 33.000 0.000 NA   NA
 3545206 3545207 NMCC_1936 NMCC_1937     TRUE 0.598 40.000 0.000 NA   NA
 3545207 3545208 NMCC_1937 NMCC_1938     TRUE 0.658 33.000 0.000 NA   NA
 3545208 3545209 NMCC_1938 NMCC_1940     TRUE 0.515 70.000 0.000 NA   NA
 3545210 3545211 NMCC_1939 NMCC_1941   gapA1 FALSE 0.180 201.000 0.000 1.000 N NA
 3545212 3545213 NMCC_1942 NMCC_1944 aat fur FALSE 0.300 70.000 0.006 1.000 N NA
 3545214 3545215 NMCC_1943 NMCC_1945   dapB TRUE 0.910 10.000 0.049 1.000 N NA
 3545216 3545217 NMCC_1946 NMCC_1947     TRUE 0.805 18.000 0.000 NA   NA
 3545217 3545218 NMCC_1947 NMCC_1948     TRUE 0.999 2.000 0.667 NA   NA
 3545218 3545219 NMCC_1948 NMCC_1949   lpxB TRUE 0.868 8.000 0.003 NA   NA
 3545219 3545220 NMCC_1949 NMCC_1950 lpxB rluC FALSE 0.149 243.000 0.000 1.000 N NA
 3545220 3545221 NMCC_1950 NMCC_1951 rluC   FALSE 0.384 148.000 0.000 NA   NA
 3545223 3545224 NMCC_1953 NMCC_1954     TRUE 0.785 -19.000 0.000 NA   NA
 3545224 3545225 NMCC_1954 NMCC_1955   pdxA FALSE 0.143 529.000 0.000 NA   NA
 3545226 3545227 NMCC_1956 NMCC_1957   gidA FALSE 0.119 292.000 0.000 1.000 N NA
 3545227 3545228 NMCC_1957 NMCC_1958 gidA rnhB FALSE 0.326 68.000 0.000 1.000 N NA
 3545228 3545229 NMCC_1958 NMCC_1959 rnhB   FALSE 0.273 247.000 0.000 NA   NA
 3545230 3545231 NMCC_1960 NMCC_1961   gidB TRUE 0.932 99.000 0.339 1.000 N NA
 3545231 3545232 NMCC_1961 NMCC_1962 gidB   TRUE 0.506 96.000 0.000 NA   NA
 3545233 3545234 NMCC_1963 NMCC_1964     TRUE 0.619 37.000 0.000 NA   NA
 3545234 3545235 NMCC_1964 NMCC_1965   frr TRUE 0.480 111.000 0.000 NA   NA
 3545235 3545236 NMCC_1965 NMCC_1966 frr uppS TRUE 0.980 29.000 0.409 1.000 N NA
 3545236 3545237 NMCC_1966 NMCC_1967 uppS cdsA TRUE 0.998 3.000 0.400 1.000 Y NA
 3545237 3545238 NMCC_1967 NMCC_1968 cdsA dxr TRUE 0.998 5.000 0.372 1.000 Y NA
 3545238 3545239 NMCC_1968 NMCC_1969 dxr   TRUE 0.990 -49.000 0.568 1.000 N NA
 3545239 3545240 NMCC_1969 NMCC_1970   omp85 TRUE 0.955 55.000 0.204 1.000 Y NA
 3545240 3545241 NMCC_1970 NMCC_1971 omp85 ompH TRUE 0.982 66.000 0.354 1.000 Y NA
 3545241 3545242 NMCC_1971 NMCC_1972 ompH lpxD TRUE 0.998 33.000 0.814 1.000 Y NA
 3545242 3545243 NMCC_1972 NMCC_1973 lpxD fabZ TRUE 0.994 34.000 0.796 1.000 N NA
 3545243 3545244 NMCC_1973 NMCC_1974 fabZ lpxA TRUE 0.993 87.000 0.850 1.000 N NA
 3545244 3545245 NMCC_1974 NMCC_1975 lpxA   FALSE 0.100 357.000 0.000 1.000 N NA
 3545245 3545246 NMCC_1975 NMCC_1976   dadA TRUE 0.764 79.000 0.000 1.000 Y NA
 3545246 3545247 NMCC_1976 NMCC_1977 dadA   FALSE 0.129 271.000 0.000 1.000 N NA
 3545247 3545248 NMCC_1977 NMCC_1978   valS FALSE 0.315 97.000 0.000 1.000 N NA
 3545249 3545250 NMCC_1979 NMCC_1980 oxyR minE FALSE 0.182 214.000 0.008 NA N NA
 3545250 3545251 NMCC_1980 NMCC_1981 minE minD TRUE 0.999 4.000 0.618 NA Y NA
 3545251 3545252 NMCC_1981 NMCC_1982 minD minC TRUE 0.995 28.000 0.466 1.000 Y NA
 3545252 3545253 NMCC_1982 NMCC_1983 minC rplQ FALSE 0.288 114.000 0.000 1.000 N NA
 3545253 3545254 NMCC_1983 NMCC_1984 rplQ rpoA TRUE 0.998 24.000 0.873 1.000 N NA
 3545254 3545255 NMCC_1984 NMCC_1985 rpoA rpsD TRUE 0.990 26.000 0.549 1.000 N NA
 3545255 3545256 NMCC_1985 NMCC_1986 rpsD rpsK TRUE 0.998 20.000 0.509 0.027 Y NA
 3545256 3545257 NMCC_1986 NMCC_1987 rpsK rpsM TRUE 1.000 20.000 0.810 0.020 Y NA
 3545257 3545258 NMCC_1987 NMCC_1987a rpsM rpmJ TRUE 0.944 66.000 0.194 0.020   NA
 3545258 3545259 NMCC_1987a NMCC_1987b rpmJ infA TRUE 0.924 21.000 0.104 1.000   NA
 3545259 3545260 NMCC_1987b NMCC_1988 infA secY TRUE 0.948 5.000 0.083 1.000 N NA
 3545260 3545261 NMCC_1988 NMCC_1988a secY rplO TRUE 0.998 12.000 0.730 1.000 N NA
 3545261 3545262 NMCC_1988a NMCC_1989 rplO rpmD TRUE 1.000 2.000 0.653 0.003 Y NA
 3545262 3545263 NMCC_1989 NMCC_1990 rpmD rpsE TRUE 1.000 -7.000 0.789 0.027 Y NA
 3545263 3545264 NMCC_1990 NMCC_1991 rpsE rplR TRUE 1.000 19.000 0.814 0.027 Y NA
 3545264 3545265 NMCC_1991 NMCC_1992 rplR rplF TRUE 1.000 14.000 0.815 0.020 Y NA
 3545265 3545266 NMCC_1992 NMCC_1992a rplF rpsH TRUE 1.000 14.000 0.808 0.020 Y NA
 3545266 3545267 NMCC_1992a NMCC_1993 rpsH rpsN TRUE 0.997 16.000 0.295 0.020 Y NA
 3545267 3545268 NMCC_1993 NMCC_1994 rpsN rplE TRUE 0.999 3.000 0.309 0.020 Y NA
 3545268 3545269 NMCC_1994 NMCC_1995 rplE rplX TRUE 1.000 10.000 0.758 0.020 Y NA
 3545269 3545270 NMCC_1995 NMCC_1995a rplX rplN TRUE 1.000 12.000 0.810 0.027 Y NA
 3545270 3545271 NMCC_1995a NMCC_1996 rplN rpsQ TRUE 0.996 222.000 0.791 0.027 Y NA
 3545271 3545272 NMCC_1996 NMCC_1997 rpsQ rpmC TRUE 1.000 0.000 0.828 0.020 Y NA
 3545272 3545273 NMCC_1997 NMCC_1998 rpmC rplP TRUE 1.000 0.000 0.802 0.020 Y NA
 3545273 3545274 NMCC_1998 NMCC_1999 rplP rpsC TRUE 1.000 -16.000 0.828 0.027 Y NA
 3545274 3545275 NMCC_1999 NMCC_2000 rpsC rplV TRUE 1.000 10.000 0.719 0.027 Y NA
 3545275 3545276 NMCC_2000 NMCC_2001 rplV rpsS TRUE 1.000 9.000 0.769 0.027 Y NA
 3545276 3545277 NMCC_2001 NMCC_2002 rpsS rplB TRUE 1.000 7.000 0.820 0.027 Y NA
 3545277 3545278 NMCC_2002 NMCC_2003 rplB rplW TRUE 1.000 6.000 0.849 1.000 Y NA
 3545278 3545279 NMCC_2003 NMCC_2004 rplW rplD TRUE 0.999 -3.000 0.513 1.000 Y NA
 3545279 3545280 NMCC_2004 NMCC_2005 rplD rplC TRUE 0.999 0.000 0.486 0.020 Y NA
 3545280 3545281 NMCC_2005 NMCC_2006 rplC   FALSE 0.369 171.000 0.000 NA   NA
 3545281 3545282 NMCC_2006 NMCC_2007   rpsJ FALSE 0.445 121.000 0.000 NA   NA
 3545282 3545283 NMCC_2007 NMCC_2008 rpsJ tufA1 TRUE 0.908 18.000 0.003 1.000 Y NA
 3545283 3545284 NMCC_2008 NMCC_2009 tufA1 fusA TRUE 0.999 88.000 1.000 0.001 Y NA
 3545284 3545285 NMCC_2009 NMCC_2010 fusA rpsG TRUE 0.904 19.000 0.003 1.000 Y NA
 3545285 3545286 NMCC_2010 NMCC_2011 rpsG rpsL TRUE 0.997 118.000 0.620 0.004 Y NA
 3545286 3545287 NMCC_2011 NMCC_2012 rpsL rpoC TRUE 0.508 258.000 0.122 1.000 N NA
 3545287 3545288 NMCC_2012 NMCC_2013 rpoC rpoB TRUE 0.997 157.000 0.851 0.001   NA
 3545288 3545289 NMCC_2013 NMCC_2014 rpoB rplL TRUE 0.780 253.000 0.223 1.000   NA
 3545289 3545290 NMCC_2014 NMCC_2015 rplL rplJ TRUE 0.998 58.000 0.884 1.000 Y NA
 3545290 3545291 NMCC_2015 NMCC_2016 rplJ rplA TRUE 0.923 257.000 0.302 1.000 Y NA
 3545291 3545292 NMCC_2016 NMCC_2017 rplA rplK TRUE 1.000 0.000 0.838 0.027 Y NA
 3545292 3545293 NMCC_2017 NMCC_2018 rplK nusG TRUE 0.986 101.000 0.681 1.000 N NA
 3545293 3545294 NMCC_2018 NMCC_2019 nusG secE TRUE 0.992 92.000 0.843 1.000 N NA
 3545294 3545295 NMCC_2019 NMCC_2020 secE   FALSE 0.463 116.000 0.000 NA   NA
 3545295 3545296 NMCC_2020 NMCC_2021   tufA2 TRUE 0.899 7.000 0.000 NA   NA
 3545296 3545297 NMCC_2021 NMCC_2022 tufA2   TRUE 0.552 49.000 0.000 NA   NA
 3545297 3545298 NMCC_2022 NMCC_2023     TRUE 0.882 10.000 0.000 NA   NA
 3545298 3545299 NMCC_2023 NMCC_2024     TRUE 0.677 31.000 0.000 NA   NA
 3545299 3545300 NMCC_2024 NMCC_2025     TRUE 0.504 97.000 0.000 NA   NA
 3545300 3545301 NMCC_2025 NMCC_2026     FALSE 0.417 123.000 0.000 1.000   NA
 3545301 3545302 NMCC_2026 NMCC_2027     TRUE 0.509 83.000 0.000 1.000   NA
 3545303 3545304 NMCC_2028 NMCC_2029     TRUE 0.779 20.000 0.000 NA   NA
 3545305 3545306 NMCC_2030 NMCC_2031 topA   TRUE 0.561 132.000 0.040 NA   NA
 3545306 3545307 NMCC_2031 NMCC_2032   dprA TRUE 0.930 26.000 0.124 NA   NA
 3545307 3545308 NMCC_2032 NMCC_2033 dprA ntrX FALSE 0.326 91.000 0.000 1.000 N NA
 3545308 3545309 NMCC_2033 NMCC_2034 ntrX ntrY TRUE 0.994 140.000 0.605 0.078 Y NA
 3545309 3545310 NMCC_2034 NMCC_2035 ntrY   TRUE 0.999 0.000 0.810 NA   NA
 3545310 3545311 NMCC_2035 NMCC_2036   rsmB TRUE 0.907 -34.000 0.094 NA   NA
 3545311 3545312 NMCC_2036 NMCC_2037 rsmB   TRUE 0.563 47.000 0.000 NA   NA
 3545312 3545313 NMCC_2037 NMCC_2038   fmt TRUE 0.643 34.000 0.000 NA   NA
 3545313 3545314 NMCC_2038 NMCC_2039 fmt def TRUE 0.950 88.000 0.105 0.031 Y NA
 3545314 3545315 NMCC_2039 NMCC_2041 def   TRUE 0.514 73.000 0.000 NA   NA
 3545317 3545318 NMCC_2042 NMCC_2043   pyrI TRUE 0.514 71.000 0.000 NA   NA
 3545318 3545319 NMCC_2043 NMCC_2044 pyrI pyrB TRUE 0.977 112.000 0.197 0.001 Y NA
 3545320 3545321 NMCC_2045 NMCC_2046     TRUE 0.803 -15.000 0.000 NA   NA
 3545321 3545322 NMCC_2046 NMCC_2047     FALSE 0.276 245.000 0.000 NA   NA
 3545322 3545323 NMCC_2047 NMCC_2048     FALSE 0.440 122.000 0.000 NA   NA
 3545323 3545324 NMCC_2048 NMCC_2049     FALSE 0.385 145.000 0.000 NA   NA
 3545325 3545326 NMCC_2050 NMCC_2051     FALSE 0.235 281.000 0.000 NA   NA
 3545329 3545330 NMCC_2054 NMCC_2055   lpcA TRUE 0.978 5.000 0.187 1.000 N NA
 3545330 3545331 NMCC_2055 NMCC_2056 lpcA   TRUE 0.987 64.000 0.613 NA   NA
 3545331 3545332 NMCC_2056 NMCC_2057     TRUE 0.895 8.000 0.000 NA   NA
 3545332 3545333 NMCC_2057 NMCC_2058   map TRUE 0.598 40.000 0.000 NA   NA
 3545333 3545334 NMCC_2058 NMCC_2059 map   FALSE 0.367 155.000 0.000 1.000   NA
 3545334 3545335 NMCC_2059 NMCC_2060     TRUE 0.540 52.000 0.000 NA   NA
 3545336 3545337 NMCC_2061 NMCC_2062 mqo   FALSE 0.134 537.000 0.000 1.000   NA
 3545337 3545338 NMCC_2062 NMCC_2063     FALSE 0.323 61.000 0.000 1.000 N NA
 3545339 3545340 NMCC_2064 NMCC_2065   rpsB FALSE 0.360 177.000 0.000 NA   NA
 3545340 3545341 NMCC_2065 NMCC_2066 rpsB tsf TRUE 0.994 129.000 0.748 1.000 Y NA
 3545341 3545342 NMCC_2066 NMCC_2067 tsf pyrH FALSE 0.362 217.000 0.047 1.000 N NA
 3545342 3545343 NMCC_2067 NMCC_2068 pyrH mafA FALSE 0.351 184.000 0.000 NA   NA
 3545343 3545344 NMCC_2068 NMCC_2069 mafA mafB TRUE 0.517 91.000 0.000 NA   NA
 3545344 3545345 NMCC_2069 NMCC_2070 mafB   TRUE 0.882 10.000 0.000 NA   NA
 3545345 3545346 NMCC_2070 NMCC_2071     FALSE 0.186 380.000 0.000 NA   NA
 3545346 3545347 NMCC_2071 NMCC_2072     FALSE 0.225 302.000 0.000 NA   NA
 3545347 3545348 NMCC_2072 NMCC_2073     TRUE 0.525 82.000 0.000 NA   NA
 3545348 3545349 NMCC_2073 NMCC_2074     TRUE 0.903 3.000 0.000 NA   NA
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