MicrobesOnline Operon Predictions for Streptococcus pneumoniae D39

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 2016964 2016965 SPD_0001 SPD_0002 dnaA dnaN TRUE 0.646 159.000 0.328 1.000 Y 0.414
 2016965 2016966 SPD_0002 SPD_0003 dnaN   TRUE 0.533 65.000 0.009 NA   -0.163
 2016966 2016967 SPD_0003 SPD_0004     TRUE 0.433 84.000 0.064 NA   0.816
 2016967 2016968 SPD_0004 SPD_0005   pth TRUE 0.866 71.000 0.184 1.000 Y 0.910
 2016968 2016969 SPD_0005 SPD_0006 pth mfd TRUE 0.984 1.000 0.137 1.000 N 0.698
 2016969 2016970 SPD_0006 SPD_0007 mfd   TRUE 0.720 58.000 0.024 1.000 N -0.004
 2016970 2016971 SPD_0007 SPD_0008     TRUE 0.977 -7.000 0.053 1.000 N 0.836
 2016971 2016972 SPD_0008 SPD_0009     TRUE 0.917 5.000 0.009 NA   0.804
 2016972 2016973 SPD_0009 SPD_0010     TRUE 0.981 -7.000 0.105 NA   0.118
 2016973 2016974 SPD_0010 SPD_0011   tilS TRUE 0.972 -3.000 0.014 1.000 N 0.445
 2016974 2016975 SPD_0011 SPD_0012 tilS hpt TRUE 0.978 4.000 0.067 0.068 N 0.045
 2016975 2016976 SPD_0012 SPD_0013 hpt ftsH TRUE 0.960 16.000 0.192 1.000 N 0.845
 2016976 2016977 SPD_0013 SPD_0014 ftsH comX1 FALSE 0.135 122.000 0.006 1.000   NA
 2016977 1618686 SPD_0014 SPD_0015 comX1   FALSE 0.101 94.000 0.000 NA   NA
 1618686 1618687 SPD_0015 SPD_0016   rrsA FALSE 0.033 266.000 0.000 NA   NA
 1618687 1618688 SPD_0016 SPD_0017 rrsA   FALSE 0.060 127.000 0.000 NA   NA
 1618688 1618689 SPD_0017 SPD_0018   rrlA FALSE 0.061 125.000 0.000 NA   NA
 1618689 1618690 SPD_0018 SPD_0019 rrlA rrfA TRUE 0.237 77.000 0.000 NA   -0.116
 1618690 1618691 SPD_0019 SPD_0020 rrfA   TRUE 0.863 6.000 0.000 NA   0.367
 1618691 1618692 SPD_0020 SPD_0021     FALSE 0.109 108.000 0.000 NA   0.829
 2016978 2016979 SPD_0023 SPD_0024   purA FALSE 0.037 231.000 0.000 NA   NA
 2016979 2016980 SPD_0024 SPD_0025 purA   FALSE 0.193 201.000 0.000 1.000 Y 0.971
 2016980 1618697 SPD_0025 SPD_0026   scRNA TRUE 0.602 42.000 0.000 NA   0.985
 1618697 2016981 SPD_0026 SPD_0027 scRNA dut TRUE 0.861 -39.000 0.000 NA   0.991
 2016981 2016982 SPD_0027 SPD_0028 dut   TRUE 0.904 -40.000 0.005 NA N NA
 2016982 2016983 SPD_0028 SPD_0029   radA FALSE 0.124 113.000 0.003 NA N NA
 2016983 2016984 SPD_0029 SPD_0030 radA   TRUE 0.408 73.000 0.009 1.000 N NA
 2016984 2016985 SPD_0030 SPD_0031     TRUE 0.904 25.000 0.111 NA   NA
 2016985 2016986 SPD_0031 SPD_0032     TRUE 0.890 -7.000 0.000 NA   NA
 2016986 2016987 SPD_0032 SPD_0033   prsA FALSE 0.052 145.000 0.000 NA   NA
 1618705 2016988 SPD_0034 SPD_0035     FALSE 0.081 127.000 0.000 NA   0.906
 2016988 2016989 SPD_0035 SPD_0036     TRUE 0.911 -7.000 0.000 NA   0.993
 2016989 2016990 SPD_0036 SPD_0037     FALSE 0.055 215.000 0.000 NA   0.854
 2016991 2016992 SPD_0038 SPD_0039     FALSE 0.213 85.000 0.005 NA   NA
 2016994 2016995 SPD_0041 SPD_0042 araT recO TRUE 0.959 -3.000 0.012 1.000 N NA
 2016995 2016996 SPD_0042 SPD_0043 recO plsX TRUE 0.967 -3.000 0.011 1.000 N 0.887
 2016996 2016997 SPD_0043 SPD_0044 plsX   TRUE 0.987 6.000 0.017 0.009 Y 0.598
 2016997 1618716 SPD_0044 SPD_0045     TRUE 0.596 43.000 0.000 NA   -0.218
 1618716 2016998 SPD_0045 SPD_0046   blpU FALSE 0.052 203.000 0.000 NA   -0.267
 2016998 2016999 SPD_0046 SPD_0047 blpU   TRUE 0.823 3.000 0.000 NA   -0.840
 2017000 2017001 SPD_0049 SPD_0050 comA comB TRUE 0.986 13.000 0.444 0.036   -0.058
 2017001 2017002 SPD_0050 SPD_0051 comB purC FALSE 0.124 170.000 0.004 1.000   0.024
 2017002 2017003 SPD_0051 SPD_0052 purC   TRUE 0.341 202.000 0.043 1.000 Y -0.272
 2017003 2017004 SPD_0052 SPD_0053   purF TRUE 0.532 93.000 0.024 1.000 Y -0.479
 2017004 2017005 SPD_0053 SPD_0054 purF purM TRUE 0.972 37.000 0.248 1.000 Y 0.988
 2017005 2017006 SPD_0054 SPD_0055 purM purN TRUE 0.998 -3.000 0.238 0.003 Y 0.556
 2017006 2017007 SPD_0055 SPD_0056 purN   TRUE 0.331 84.000 0.003 1.000 N 0.393
 2017007 2017008 SPD_0056 SPD_0057   purH TRUE 0.821 25.000 0.002 1.000 N -0.226
 2017008 2017009 SPD_0057 SPD_0058 purH purD TRUE 0.638 122.000 0.238 1.000 Y 0.931
 2017009 2017010 SPD_0058 SPD_0059 purD purE TRUE 0.270 403.000 0.044 1.000 Y 0.465
 2017010 2017011 SPD_0059 SPD_0060 purE purK TRUE 0.993 -13.000 0.008 0.001 Y 0.128
 2017011 2017012 SPD_0060 SPD_0061 purK   TRUE 0.797 10.000 0.000 NA   -0.023
 2017012 2017013 SPD_0061 SPD_0062   purB TRUE 0.465 63.000 0.002 NA   -0.360
 2017014 2017015 SPD_0063 SPD_0064 strH   FALSE 0.057 315.000 0.000 1.000 N 0.152
 2017016 2017017 SPD_0065 SPD_0066 bgaC   TRUE 0.995 -3.000 0.190 1.000 Y 0.907
 2017017 2017018 SPD_0066 SPD_0067     TRUE 0.995 28.000 0.810 0.040 Y 0.277
 2017018 2017019 SPD_0067 SPD_0068     TRUE 0.987 -13.000 0.000 0.040 Y 0.524
 2017019 2017020 SPD_0068 SPD_0069     TRUE 0.975 7.000 0.000 0.040 Y 0.297
 2017020 2017021 SPD_0069 SPD_0070   agaS FALSE 0.122 299.000 0.022 1.000 N 0.155
 2017021 2017022 SPD_0070 SPD_0071 agaS galM TRUE 0.244 116.000 0.000 0.032 N 0.118
 2017022 2017023 SPD_0071 SPD_0072 galM   FALSE 0.117 207.000 0.000 0.032   -0.622
 2017023 2017024 SPD_0072 SPD_0073     FALSE 0.074 150.000 0.000 NA   -0.037
 2017024 2017025 SPD_0073 SPD_0074     FALSE 0.032 975.000 0.000 NA   0.154
 2017025 2017026 SPD_0074 SPD_0075     FALSE 0.052 256.000 0.000 NA   0.039
 2017026 2017027 SPD_0075 SPD_0076     FALSE 0.076 169.000 0.000 NA   0.175
 2017027 2017028 SPD_0076 SPD_0077     TRUE 0.995 14.000 0.490 0.005 Y 0.161
 2017028 2017029 SPD_0077 SPD_0078     FALSE 0.046 310.000 0.000 NA   0.693
 2017029 2017030 SPD_0078 SPD_0079     TRUE 0.381 67.000 0.000 NA   0.558
 2017030 2017031 SPD_0079 SPD_0080     FALSE 0.105 116.000 0.000 NA   0.656
 2017031 2017032 SPD_0080 SPD_0081     TRUE 0.356 167.000 0.333 1.000   NA
 2017032 2017033 SPD_0081 SPD_0082     TRUE 0.997 -3.000 0.500 1.000 Y NA
 2017033 2017034 SPD_0082 SPD_0083   rpsD FALSE 0.115 195.000 0.002 1.000 N 0.305
 2017034 2017035 SPD_0083 SPD_0084 rpsD   FALSE 0.062 186.000 0.000 NA   0.856
 2017037 2017038 SPD_0086 SPD_0087     TRUE 0.826 -46.000 0.000 NA   NA
 2017038 2017039 SPD_0087 SPD_0088     FALSE 0.035 319.000 0.000 NA   -0.343
 2017039 2017040 SPD_0088 SPD_0089     TRUE 0.996 14.000 0.917 0.057 Y 0.821
 2017040 2017041 SPD_0089 SPD_0090     TRUE 0.587 258.000 0.250 0.057 Y -0.258
 2017041 2017042 SPD_0090 SPD_0091     FALSE 0.053 272.000 0.000 NA   0.185
 2017042 2017043 SPD_0091 SPD_0092     FALSE 0.101 122.000 0.000 NA   0.525
 2017044 2017045 SPD_0093 SPD_0094     TRUE 0.889 63.000 0.500 NA   0.742
 2017045 2017046 SPD_0094 SPD_0095     TRUE 0.985 -7.000 0.150 NA   0.496
 2017046 2017047 SPD_0095 SPD_0096     TRUE 0.986 -13.000 0.250 NA   0.600
 2017047 2017048 SPD_0096 SPD_0097     TRUE 0.272 139.000 0.100 NA N 0.527
 2017049 2017050 SPD_0098 SPD_0099   capD TRUE 0.865 42.000 0.000 NA Y 0.817
 2017050 1618771 SPD_0099 SPD_0100 capD   TRUE 0.481 55.000 0.000 NA   0.944
 2017051 2017052 SPD_0101 SPD_0102   sdhA TRUE 0.875 22.000 0.033 1.000   -0.932
 2017052 2017053 SPD_0102 SPD_0103 sdhA sdhB TRUE 0.993 9.000 0.221 0.001 Y 0.957
 2017056 2017057 SPD_0106 SPD_0107     TRUE 0.896 55.000 0.353 NA   -0.124
 2017057 2017058 SPD_0107 SPD_0108     TRUE 0.993 -3.000 0.520 NA   -0.233
 2017058 2017059 SPD_0108 SPD_0109     FALSE 0.067 206.000 0.000 1.000 N -0.204
 2017059 2017060 SPD_0109 SPD_0110   argG TRUE 0.944 17.000 0.002 1.000 Y -0.547
 2017060 2017061 SPD_0110 SPD_0111 argG argH TRUE 0.981 29.000 0.278 1.000 Y 0.597
 1618784 2017063 SPD_0113 SPD_0114     TRUE 0.890 -7.000 0.000 NA   NA
 2017063 2017064 SPD_0114 SPD_0115     TRUE 0.987 -3.000 0.286 NA   NA
 2017064 2017065 SPD_0115 SPD_0116     FALSE 0.079 146.000 0.000 NA   0.688
 2017065 2017066 SPD_0116 SPD_0117     FALSE 0.028 1580.000 0.000 NA   -0.065
 2017066 2017067 SPD_0117 SPD_0118     FALSE 0.034 594.000 0.000 NA   0.026
 2017067 2017068 SPD_0118 SPD_0119     FALSE 0.049 306.000 0.000 NA   0.192
 2017068 2017069 SPD_0119 SPD_0120     FALSE 0.038 314.000 0.000 NA   0.924
 2017069 2017070 SPD_0120 SPD_0121     FALSE 0.025 377.000 0.000 NA   -0.842
 2017070 2017071 SPD_0121 SPD_0122     FALSE 0.063 208.000 0.000 NA   0.603
 2017071 2017072 SPD_0122 SPD_0123     TRUE 0.429 56.000 0.000 NA   -0.457
 2017072 2017073 SPD_0123 SPD_0124     TRUE 0.886 -33.000 0.000 NA   0.789
 2017073 2017074 SPD_0124 SPD_0125     FALSE 0.029 1129.000 0.000 NA   0.005
 2017074 2017075 SPD_0125 SPD_0126   pspA FALSE 0.031 554.000 0.000 NA   -0.174
 2017075 2017076 SPD_0126 SPD_0127 pspA trmU FALSE 0.041 401.000 0.000 1.000   -0.225
 2017076 2017077 SPD_0127 SPD_0128 trmU   FALSE 0.142 141.000 0.003 1.000 N 0.730
 2017077 2017078 SPD_0128 SPD_0129   gidA TRUE 0.891 10.000 0.005 1.000 N -0.020
 2017079 2017080 SPD_0130 SPD_0131     TRUE 0.989 2.000 0.576 NA   NA
 2017080 2017081 SPD_0131 SPD_0132     FALSE 0.020 818.000 0.000 NA   NA
 2017081 2017082 SPD_0132 SPD_0133     TRUE 0.988 2.000 0.500 NA   NA
 2017083 2017084 SPD_0134 SPD_0135   rimI TRUE 0.987 -3.000 0.209 1.000   -0.359
 2017084 2017085 SPD_0135 SPD_0136 rimI   TRUE 0.971 -10.000 0.030 1.000   0.728
 2017086 2017087 SPD_0138 SPD_0139     TRUE 0.979 -7.000 0.000 NA Y 0.085
 2017087 2017088 SPD_0139 SPD_0140     TRUE 0.735 10.000 0.000 NA N NA
 2017088 2017089 SPD_0140 SPD_0141     FALSE 0.029 310.000 0.000 NA   NA
 2017089 2017090 SPD_0141 SPD_0142     TRUE 0.846 6.000 0.000 NA   0.779
 2017090 2017091 SPD_0142 SPD_0143     TRUE 0.793 13.000 0.000 NA   0.711
 2017091 2017092 SPD_0143 SPD_0144     FALSE 0.045 395.000 0.000 1.000   0.826
 2017092 2017093 SPD_0144 SPD_0145     FALSE 0.043 291.000 0.000 NA   0.871
 2017093 2017094 SPD_0145 SPD_0146     TRUE 0.699 22.000 0.000 NA   -0.509
 2017094 2017095 SPD_0146 SPD_0147     TRUE 0.713 12.000 0.000 NA   -0.711
 2017095 2017096 SPD_0147 SPD_0148     TRUE 0.237 72.000 0.000 NA   -0.477
 2017096 2017097 SPD_0148 SPD_0149     FALSE 0.044 333.000 0.000 NA   0.078
 2017097 2017098 SPD_0149 SPD_0150     TRUE 0.271 104.000 0.000 NA Y -0.654
 2017098 2017099 SPD_0150 SPD_0151     FALSE 0.069 154.000 0.000 NA N 0.927
 2017099 2017100 SPD_0151 SPD_0152     TRUE 0.619 100.000 0.500 NA N 0.776
 2017100 2017101 SPD_0152 SPD_0153     TRUE 0.970 -7.000 0.042 1.000 N -0.607
 2017101 2017102 SPD_0153 SPD_0154     TRUE 0.998 2.000 0.938 1.000 Y -0.396
 2017104 2017105 SPD_0156 SPD_0157     TRUE 0.992 2.000 0.667 NA   0.003
 2017105 2017106 SPD_0157 SPD_0158     TRUE 0.992 12.000 0.227 0.014 Y 0.607
 2017106 2017107 SPD_0158 SPD_0159     TRUE 0.831 52.000 0.091 NA   0.220
 2017107 2017108 SPD_0159 SPD_0160     TRUE 0.650 78.000 0.286 NA   -0.586
 2017109 2017110 SPD_0161 SPD_0162     FALSE 0.028 310.000 0.000 NA   -0.852
 2017110 2017111 SPD_0162 SPD_0163     TRUE 0.992 -3.000 0.392 NA   0.174
 2017112 2017113 SPD_0164 SPD_0165   hexB TRUE 0.356 61.000 0.000 NA   -0.558
 2017114 2017115 SPD_0166 SPD_0167 ribH ribB TRUE 0.995 1.000 0.054 0.003 Y 0.586
 2017115 2017116 SPD_0167 SPD_0168 ribB ribE TRUE 0.970 20.000 0.051 1.000 Y 0.030
 2017116 2017117 SPD_0168 SPD_0169 ribE ribD TRUE 0.995 -15.000 0.456 1.000 Y NA
 2017118 2017119 SPD_0170 SPD_0171 ruvA tag TRUE 0.965 10.000 0.012 1.000 Y 0.247
 2017119 2017120 SPD_0171 SPD_0172 tag   TRUE 0.955 -3.000 0.004 NA   0.000
 2017121 2017122 SPD_0173 SPD_0174     FALSE 0.043 255.000 0.000 NA   -0.297
 2017122 2017123 SPD_0174 SPD_0175     TRUE 0.977 -9.000 0.072 NA   0.583
 2017124 2017125 SPD_0176 SPD_0177 uvrA   TRUE 0.962 -7.000 0.008 1.000 N 0.916
 2017125 2017126 SPD_0177 SPD_0178     FALSE 0.104 132.000 0.000 1.000 N 0.731
 2017126 2017127 SPD_0178 SPD_0179     TRUE 0.823 66.000 0.267 NA   0.439
 2017127 2017128 SPD_0179 SPD_0180     TRUE 0.254 87.000 0.016 NA   -0.611
 2017128 2017129 SPD_0180 SPD_0181     TRUE 0.987 4.000 0.537 NA   0.567
 2017129 2017130 SPD_0181 SPD_0182     TRUE 0.981 16.000 0.651 NA   0.509
 2017130 2017131 SPD_0182 SPD_0183   folC FALSE 0.080 451.000 0.019 NA   0.051
 2017131 2017132 SPD_0183 SPD_0184 folC   FALSE 0.171 84.000 0.000 NA   -0.212
 2017132 2017133 SPD_0184 SPD_0185     FALSE 0.073 146.000 0.000 NA   0.842
 2017133 2017134 SPD_0185 SPD_0186     FALSE 0.056 258.000 0.000 NA   0.240
 2017134 2017135 SPD_0186 SPD_0187   nrdD TRUE 0.265 120.000 0.057 NA   0.439
 2017135 2017136 SPD_0187 SPD_0188 nrdD   TRUE 0.911 12.000 0.062 NA   -0.485
 2017136 2017137 SPD_0188 SPD_0189     TRUE 0.910 44.000 0.292 NA   -0.459
 2017137 2017138 SPD_0189 SPD_0190   nrdG TRUE 0.987 -7.000 0.159 1.000   0.341
 2017138 2017139 SPD_0190 SPD_0191 nrdG   TRUE 0.977 -3.000 0.029 1.000 N 0.314
 2017139 2017140 SPD_0191 SPD_0192   rpsJ FALSE 0.067 267.000 0.000 1.000 N 0.446
 2017140 2017141 SPD_0192 SPD_0193 rpsJ rplC TRUE 0.690 217.000 0.467 0.040 Y NA
 2017141 2017142 SPD_0193 SPD_0194 rplC rplD TRUE 0.992 25.000 0.544 0.030 Y NA
 2017142 2017143 SPD_0194 SPD_0195 rplD rplW TRUE 0.998 0.000 0.307 0.030 Y 0.177
 2017143 2017144 SPD_0195 SPD_0196 rplW rplB TRUE 0.996 18.000 0.849 0.035 Y -0.688
 2017144 2017145 SPD_0196 SPD_0197 rplB rpsS TRUE 0.909 104.000 0.820 0.040 Y 0.443
 2017145 2017146 SPD_0197 SPD_0198 rpsS rplV TRUE 0.996 12.000 0.769 0.040 Y 0.700
 2017146 2017147 SPD_0198 SPD_0199 rplV rpsC TRUE 0.996 13.000 0.719 0.040 Y 0.662
 2017147 2017148 SPD_0199 SPD_0200 rpsC rplP TRUE 0.998 4.000 0.828 0.040 Y 0.781
 2017148 2017149 SPD_0200 SPD_0201 rplP rpmC TRUE 0.996 10.000 0.802 0.030 Y 0.849
 2017149 2017150 SPD_0201 SPD_0202 rpmC rpsQ TRUE 0.995 25.000 0.828 0.030 Y -0.006
 2017150 2017151 SPD_0202 SPD_0203 rpsQ rplN TRUE 0.994 26.000 0.791 0.040 Y 0.880
 2017151 2017152 SPD_0203 SPD_0204 rplN rplX TRUE 0.954 78.000 0.810 0.040 Y 0.807
 2017152 2017153 SPD_0204 SPD_0205 rplX rplE TRUE 0.995 24.000 0.758 0.030 Y 0.623
 2017153 2017154 SPD_0205 SPD_0206 rplE rpsN TRUE 0.992 18.000 0.309 0.030 Y 0.951
 2017154 2017155 SPD_0206 SPD_0207 rpsN rpsH TRUE 0.629 285.000 0.295 0.030 Y 0.853
 2017155 2017156 SPD_0207 SPD_0208 rpsH rplF TRUE 0.832 192.000 0.808 0.030 Y 0.043
 2017156 2017157 SPD_0208 SPD_0209 rplF rplR TRUE 0.949 84.000 0.815 0.030 Y 0.302
 2017157 2017158 SPD_0209 SPD_0210 rplR rpsE TRUE 0.996 18.000 0.814 0.040 Y 0.620
 2017158 2017159 SPD_0210 SPD_0211 rpsE rpmD TRUE 0.995 14.000 0.789 0.040 Y NA
 2017159 2017160 SPD_0211 SPD_0212 rpmD rplO TRUE 0.822 145.000 0.653 0.005 Y NA
 2017160 2017161 SPD_0212 SPD_0213 rplO secY TRUE 0.981 13.000 0.730 1.000 N -0.762
 2017161 2017162 SPD_0213 SPD_0214 secY adk TRUE 0.350 151.000 0.241 1.000 N -0.362
 2017162 2017163 SPD_0214 SPD_0215 adk infA TRUE 0.297 117.000 0.059 1.000 N 0.065
 2017163 2017164 SPD_0215 SPD_0216 infA rpsM TRUE 0.538 159.000 0.075 0.035 Y -0.558
 2017164 2017165 SPD_0216 SPD_0217 rpsM rpsK TRUE 0.997 18.000 0.810 0.030 Y 0.715
 2017165 2017166 SPD_0217 SPD_0218 rpsK rpoA TRUE 0.941 43.000 0.308 1.000 N 0.466
 2017166 2017167 SPD_0218 SPD_0219 rpoA rplQ TRUE 0.986 12.000 0.873 1.000 N -0.312
 2017167 2017168 SPD_0219 SPD_0220 rplQ   FALSE 0.093 265.000 0.002 1.000 N 0.402
 2017168 1618892 SPD_0220 SPD_0221     TRUE 0.809 10.000 0.000 NA   0.577
 1618892 2017169 SPD_0221 SPD_0222     FALSE 0.059 244.000 0.000 NA   0.459
 2017170 2017171 SPD_0223 SPD_0224     TRUE 0.872 27.000 0.000 0.055   0.444
 2017171 2017172 SPD_0224 SPD_0225     TRUE 0.988 -10.000 0.000 0.055 Y 0.442
 2017172 2017173 SPD_0225 SPD_0226     TRUE 0.897 13.000 0.000 0.055   0.757
 2017173 2017174 SPD_0226 SPD_0227     FALSE 0.080 145.000 0.000 NA   0.664
 2017174 2017175 SPD_0227 SPD_0228     FALSE 0.034 632.000 0.000 NA   0.687
 2017175 2017176 SPD_0228 SPD_0229     TRUE 0.318 75.000 0.000 1.000   0.744
 2017177 2017178 SPD_0230 SPD_0231     TRUE 0.990 13.000 0.188 0.042 Y 0.317
 2017178 2017179 SPD_0231 SPD_0232     TRUE 0.233 195.000 0.091 1.000 N 0.582
 2017179 2017180 SPD_0232 SPD_0233     TRUE 0.992 46.000 0.889 0.024 Y 0.875
 2017180 2017181 SPD_0233 SPD_0234     TRUE 0.997 17.000 0.889 0.024 Y 0.902
 2017181 2017182 SPD_0234 SPD_0235   pfl TRUE 0.278 151.000 0.132 1.000 N 0.969
 2017182 2017183 SPD_0235 SPD_0236 pfl talC TRUE 0.972 19.000 0.368 1.000 N 0.954
 2017183 2017184 SPD_0236 SPD_0237 talC gldA TRUE 0.962 18.000 0.211 1.000 N 0.876
 2017184 2017185 SPD_0237 SPD_0238 gldA leuS FALSE 0.031 455.000 0.000 1.000 N -0.846
 2017185 2017186 SPD_0238 SPD_0239 leuS   FALSE 0.218 194.000 0.000 1.000 Y 0.704
 2017186 2017187 SPD_0239 SPD_0240     TRUE 0.962 12.000 0.037 0.016   0.441
 2017187 2017188 SPD_0240 SPD_0241   ruvB FALSE 0.024 1041.000 0.000 1.000   NA
 2017188 2017189 SPD_0241 SPD_0242 ruvB   TRUE 0.913 -19.000 0.004 NA   NA
 2017189 2017190 SPD_0242 SPD_0243   uppS FALSE 0.061 231.000 0.000 NA   0.194
 2017190 2017191 SPD_0243 SPD_0244 uppS cdsA TRUE 0.982 9.000 0.113 1.000 Y -0.120
 2017191 2017192 SPD_0244 SPD_0245 cdsA eep TRUE 0.885 22.000 0.040 1.000 N -0.858
 2017192 2017193 SPD_0245 SPD_0246 eep proS TRUE 0.943 13.000 0.095 1.000 N 0.754
 2017193 2017194 SPD_0246 SPD_0247 proS   FALSE 0.164 100.000 0.002 1.000 N -0.708
 2017194 2017195 SPD_0247 SPD_0248   glmS FALSE 0.116 192.000 0.003 1.000 N 0.772
 2017195 2017196 SPD_0248 SPD_0249 glmS   FALSE 0.091 119.000 0.000 NA N -0.194
 2017198 2017199 SPD_0251 SPD_0252 rpsL rpsG TRUE 0.990 20.000 0.224 0.006 Y -0.508
 2017199 2017200 SPD_0252 SPD_0253 rpsG fusA TRUE 0.550 425.000 0.579 1.000 Y -0.104
 2017200 2017201 SPD_0253 SPD_0254 fusA polC FALSE 0.206 104.000 0.003 1.000 N 0.676
 2017201 2017202 SPD_0254 SPD_0255 polC   TRUE 0.346 102.000 0.000 1.000 Y -0.137
 2017202 2017203 SPD_0255 SPD_0256     TRUE 0.990 -7.000 0.400 NA   -0.561
 2017203 2017204 SPD_0256 SPD_0257     TRUE 0.690 21.000 0.000 NA   NA
 2017204 2017205 SPD_0257 SPD_0258   pepS TRUE 0.907 22.000 0.095 NA   NA
 2017205 2017206 SPD_0258 SPD_0259 pepS   TRUE 0.959 10.000 0.190 1.000   -0.128
 2017206 2017207 SPD_0259 SPD_0260   rsuA-1 FALSE 0.054 313.000 0.000 1.000   0.639
 2017207 2017208 SPD_0260 SPD_0261 rsuA-1 pepC FALSE 0.157 217.000 0.041 1.000 N -0.127
 2017209 2017210 SPD_0262 SPD_0263   manM TRUE 0.995 24.000 0.812 0.038 Y 0.878
 2017210 2017211 SPD_0263 SPD_0264 manM manL TRUE 0.995 28.000 0.943 0.038 Y 0.938
 2017211 2017212 SPD_0264 SPD_0265 manL   FALSE 0.068 233.000 0.000 1.000   0.103
 2017212 2017213 SPD_0265 SPD_0266     FALSE 0.054 339.000 0.000 1.000   0.156
 2017214 2017215 SPD_0267 SPD_0268     TRUE 0.594 69.000 0.034 NA   0.262
 2017215 2017216 SPD_0268 SPD_0269   folP FALSE 0.157 95.000 0.000 NA   0.240
 2017216 2017217 SPD_0269 SPD_0270 folP   TRUE 0.991 2.000 0.006 0.006 Y -0.138
 2017217 2017218 SPD_0270 SPD_0271   folE TRUE 0.982 -19.000 0.024 1.000 Y -0.766
 2017218 2017219 SPD_0271 SPD_0272 folE sulD TRUE 0.915 43.000 0.005 1.000 Y 0.336
 2017221 2017222 SPD_0274 SPD_0275 rplM rpsI TRUE 0.995 20.000 0.601 0.030 Y -0.112
 2017222 2017223 SPD_0275 SPD_0276 rpsI   FALSE 0.038 687.000 0.000 1.000   0.788
 2017223 2017224 SPD_0276 SPD_0277   bglA-1 FALSE 0.065 190.000 0.000 1.000   0.985
 2017224 2017225 SPD_0277 SPD_0278 bglA-1   TRUE 0.812 52.000 0.066 NA   0.501
 2017225 2017226 SPD_0278 SPD_0279     FALSE 0.208 130.000 0.033 NA   0.262
 2017226 2017227 SPD_0279 SPD_0280     TRUE 0.460 124.000 0.128 0.024 N -0.400
 2017227 2017228 SPD_0280 SPD_0281     TRUE 0.961 10.000 0.043 0.024 N -0.082
 2017228 2017229 SPD_0281 SPD_0282     TRUE 0.935 19.000 0.105 NA   0.888
 2017229 2017230 SPD_0282 SPD_0283     TRUE 0.810 80.000 0.842 NA   0.982
 2017230 2017231 SPD_0283 SPD_0284     FALSE 0.033 382.000 0.000 NA   0.999
 2017231 2017232 SPD_0284 SPD_0285     FALSE 0.038 402.000 0.000 NA   0.796
 2017234 1618959 SPD_0287 SPD_0288     FALSE 0.045 381.000 0.000 NA   0.452
 2017235 2017236 SPD_0289 SPD_0290 eda   TRUE 0.983 10.000 0.167 1.000 Y 0.891
 2017236 2017237 SPD_0290 SPD_0291     TRUE 0.961 31.000 0.094 1.000 Y 0.963
 2017237 2017238 SPD_0291 SPD_0292     TRUE 0.959 19.000 0.197 1.000 N 0.866
 2017239 2017240 SPD_0293 SPD_0294     TRUE 0.951 12.000 0.160 1.000   -0.318
 2017240 2017241 SPD_0294 SPD_0295     TRUE 0.969 11.000 0.267 1.000   0.108
 2017241 2017242 SPD_0295 SPD_0296     TRUE 0.996 15.000 0.933 0.038 Y -0.843
 2017242 2017243 SPD_0296 SPD_0297     TRUE 0.999 -13.000 0.933 0.038 Y 0.087
 2017243 2017244 SPD_0297 SPD_0298   yajC-1 TRUE 0.948 0.000 0.002 NA N -0.068
 2017244 2017245 SPD_0298 SPD_0299 yajC-1   TRUE 0.679 22.000 0.000 NA   NA
 2017245 2017246 SPD_0299 SPD_0300     TRUE 0.825 -54.000 0.000 NA   NA
 2017246 2017247 SPD_0300 SPD_0301   regR TRUE 0.886 60.000 0.562 NA   NA
 2017248 2017249 SPD_0302 SPD_0303     TRUE 0.712 16.000 0.000 NA   -0.731
 2017250 2017251 SPD_0304 SPD_0305 mraW ftsL TRUE 0.943 12.000 0.077 1.000 N 0.155
 2017251 2017252 SPD_0305 SPD_0306 ftsL pbpX TRUE 0.987 4.000 0.456 1.000 N 0.789
 2017252 2017253 SPD_0306 SPD_0307 pbpX mraY TRUE 0.988 2.000 0.038 1.000 Y 0.273
 2017253 2017254 SPD_0307 SPD_0308 mraY clpL FALSE 0.047 557.000 0.000 1.000 N 0.267
 2017255 2017256 SPD_0309 SPD_0310 luxS   TRUE 0.238 95.000 0.006 NA   0.521
 2017257 2017258 SPD_0311 SPD_0313 dexB   FALSE 0.055 159.000 0.000 NA   -0.428
 1618984 1618985 SPD_0312 SPD_0314     FALSE 0.070 179.000 0.000 NA   0.672
 2017259 2017260 SPD_0315 SPD_0316 cps2A cps2B TRUE 0.991 2.000 0.583 1.000 N NA
 2017260 2017261 SPD_0316 SPD_0317 cps2B cps2C TRUE 0.994 9.000 0.636 1.000 Y -0.045
 2017261 2017262 SPD_0317 SPD_0318 cps2C cps2D TRUE 0.987 10.000 0.800 1.000 N 0.156
 2017262 2017263 SPD_0318 SPD_0319 cps2D cps2E TRUE 0.930 15.000 0.067 NA N 0.686
 2017263 2017264 SPD_0319 SPD_0320 cps2E cps2T TRUE 0.957 32.000 0.067 NA Y 0.483
 2017264 2017265 SPD_0320 SPD_0321 cps2T cps2F TRUE 0.978 -7.000 0.079 NA   -0.021
 2017265 2017266 SPD_0321 SPD_0322 cps2F cps2G TRUE 0.803 16.000 0.000 NA   0.555
 2017266 2017267 SPD_0322 SPD_0323 cps2G csp2H TRUE 0.665 41.000 0.000 NA   0.667
 2017267 2017268 SPD_0323 SPD_0324 csp2H cps2I FALSE 0.086 130.000 0.000 NA   0.770
 2017268 2017269 SPD_0324 SPD_0325 cps2I   TRUE 0.930 -3.000 0.000 1.000   -0.313
 2017269 2017270 SPD_0325 SPD_0326   cps2K TRUE 0.633 36.000 0.000 1.000   NA
 2017270 2017271 SPD_0326 SPD_0327 cps2K cps2P TRUE 0.673 29.000 0.000 1.000   NA
 2017271 2017272 SPD_0327 SPD_0328 cps2P cps2L FALSE 0.200 78.000 0.000 1.000   NA
 2017272 2017273 SPD_0328 SPD_0329 cps2L rfbC TRUE 0.992 1.000 0.149 1.000 Y NA
 2017273 2017274 SPD_0329 SPD_0330 rfbC rfbB TRUE 0.989 13.000 0.350 1.000 Y 0.191
 2017274 2017275 SPD_0330 SPD_0331 rfbB rfbD TRUE 0.951 66.000 0.273 0.004 Y NA
 2017275 1619003 SPD_0331 SPD_0332 rfbD   FALSE 0.193 76.000 0.000 NA   NA
 1619003 2017276 SPD_0332 SPD_0333     TRUE 0.326 71.000 0.000 NA   0.153
 2017276 2017277 SPD_0333 SPD_0334   aliA FALSE 0.065 202.000 0.000 NA   0.566
 2017277 2017278 SPD_0334 SPD_0335 aliA   FALSE 0.057 300.000 0.000 1.000   0.588
 2017279 2017280 SPD_0336 SPD_0337 pbp1A recU TRUE 0.992 -3.000 0.319 1.000   0.396
 2017281 2017282 SPD_0338 SPD_0339     TRUE 0.825 70.000 0.579 NA   NA
 2017282 1619011 SPD_0339 SPD_0340   rnpB TRUE 0.708 13.000 0.000 NA   NA
 1619011 2017283 SPD_0340 SPD_0341 rnpB   TRUE 0.298 70.000 0.000 NA   0.927
 2017283 2017284 SPD_0341 SPD_0342     TRUE 0.898 13.000 0.029 NA   0.860
 2017284 2017285 SPD_0342 SPD_0343   gnd TRUE 0.307 76.000 0.005 NA   NA
 2017285 2017286 SPD_0343 SPD_0344 gnd   TRUE 0.870 12.000 0.012 1.000 N NA
 2017286 2017287 SPD_0344 SPD_0345   cbpC FALSE 0.090 98.000 0.000 NA   NA
 2017287 2017288 SPD_0345 SPD_0346 cbpC mvk FALSE 0.064 122.000 0.000 NA   NA
 2017288 2017289 SPD_0346 SPD_0347 mvk mvaD TRUE 0.997 -18.000 0.281 0.005 Y 0.814
 2017289 2017290 SPD_0347 SPD_0348 mvaD mvaK2 TRUE 0.998 -13.000 0.312 0.006 Y 0.854
 2017290 2017291 SPD_0348 SPD_0349 mvaK2 fni TRUE 0.979 -16.000 0.097 1.000 N 0.439
 2017291 2017292 SPD_0349 SPD_0350 fni   TRUE 0.354 78.000 0.005 NA   0.590
 2017292 2017293 SPD_0350 SPD_0351     TRUE 0.994 -3.000 0.679 NA   -0.103
 2017293 2017294 SPD_0351 SPD_0352     TRUE 0.996 14.000 0.853 0.014 Y -0.400
 2017294 2017295 SPD_0352 SPD_0353     TRUE 0.926 1.000 0.000 NA   0.354
 2017295 1619025 SPD_0353 SPD_0354     FALSE 0.167 93.000 0.000 NA   0.461
 1619025 2017296 SPD_0354 SPD_0355     FALSE 0.083 150.000 0.000 NA   0.248
 2017296 1619027 SPD_0355 SPD_0356   cbpG FALSE 0.034 486.000 0.000 NA   -0.079
 1619027 2017297 SPD_0356 SPD_0357 cbpG cbpF TRUE 0.763 19.000 0.000 NA   0.951
 1619029 2017298 SPD_0358 SPD_0359     FALSE 0.024 571.000 0.000 NA   -0.551
 2017299 2017300 SPD_0360 SPD_0361 mtlA   TRUE 0.976 24.000 0.336 0.023 N NA
 2017300 2017301 SPD_0361 SPD_0362   mtlA2 TRUE 0.987 2.000 0.131 0.023 N NA
 2017301 2017302 SPD_0362 SPD_0363 mtlA2   TRUE 0.855 62.000 0.062 1.000 Y NA
 2017302 2017303 SPD_0363 SPD_0364     FALSE 0.026 382.000 0.000 NA   NA
 2017303 2017304 SPD_0364 SPD_0365   tig FALSE 0.030 304.000 0.000 NA   NA
 2017305 2017306 SPD_0366 SPD_0367   lepB FALSE 0.213 234.000 0.099 1.000 N 0.564
 2017306 2017307 SPD_0367 SPD_0368 lepB rnhC TRUE 0.925 12.000 0.080 1.000 N NA
 2017308 2017309 SPD_0369 SPD_0370     TRUE 0.967 -3.000 0.019 NA   0.793
 2017309 2017310 SPD_0370 SPD_0371     TRUE 0.339 104.000 0.070 1.000   0.763
 2017310 2017311 SPD_0371 SPD_0372     FALSE 0.047 342.000 0.000 1.000 N 0.911
 2017311 2017312 SPD_0372 SPD_0373     FALSE 0.059 218.000 0.000 NA   0.058
 2017312 2017313 SPD_0373 SPD_0374     FALSE 0.125 110.000 0.000 NA   0.377
 2017314 2017315 SPD_0375 SPD_0376 serS   FALSE 0.088 213.000 0.003 NA   0.716
 2017315 2017316 SPD_0376 SPD_0377     TRUE 0.940 3.000 0.010 NA   0.415
 2017317 2017318 SPD_0378 SPD_0379     TRUE 0.516 94.000 0.098 0.041 N NA
 2017318 2017319 SPD_0379 SPD_0380   fabH TRUE 0.981 0.000 0.070 1.000 N 0.462
 2017319 2017320 SPD_0380 SPD_0381 fabH acpP TRUE 0.868 60.000 0.065 0.008   0.502
 2017320 2017321 SPD_0381 SPD_0382 acpP fabK TRUE 0.380 119.000 0.216 1.000   -0.498
 2017321 2017322 SPD_0382 SPD_0383 fabK fabD TRUE 0.983 -7.000 0.099 1.000   0.216
 2017322 2017323 SPD_0383 SPD_0384 fabD fabG TRUE 0.990 34.000 0.432 0.008 Y 0.836
 2017323 2017324 SPD_0384 SPD_0385 fabG fabF TRUE 0.968 22.000 0.056 1.000 Y 0.023
 2017324 2017325 SPD_0385 SPD_0386 fabF accB TRUE 0.987 3.000 0.074 1.000 Y 0.707
 2017325 2017326 SPD_0386 SPD_0387 accB fabZ TRUE 0.996 -3.000 0.047 0.008 Y 0.496
 2017326 2017327 SPD_0387 SPD_0388 fabZ accC TRUE 0.964 12.000 0.045 1.000 Y NA
 2017327 2017328 SPD_0388 SPD_0389 accC accD TRUE 0.974 37.000 0.090 0.003 Y NA
 2017328 2017329 SPD_0389 SPD_0390 accD accA TRUE 0.998 -3.000 0.234 0.002 Y 0.915
 2017329 2017330 SPD_0390 SPD_0391 accA   FALSE 0.111 159.000 0.003 NA   0.705
 2017330 2017331 SPD_0391 SPD_0392     TRUE 0.469 257.000 1.000 NA   NA
 2017332 2017333 SPD_0393 SPD_0394 nusB   TRUE 0.986 -7.000 0.265 NA   NA
 2017333 2017334 SPD_0394 SPD_0395   efp TRUE 0.884 22.000 0.031 NA   0.915
 2017334 2017335 SPD_0395 SPD_0396 efp gatB TRUE 0.294 129.000 0.000 1.000 Y 0.392
 2017335 2017336 SPD_0396 SPD_0397 gatB gatA TRUE 0.999 0.000 0.492 0.002 Y 0.720
 2017336 2017337 SPD_0397 SPD_0398 gatA gatC TRUE 0.999 0.000 0.643 0.002 Y 0.792
 2017338 2017339 SPD_0399 SPD_0400 prfC   FALSE 0.040 269.000 0.000 1.000   NA
 2017339 2017340 SPD_0400 SPD_0401   rpmB FALSE 0.133 116.000 0.000 1.000   0.375
 2017340 2017341 SPD_0401 SPD_0402 rpmB   FALSE 0.181 157.000 0.044 NA   0.807
 2017341 2017342 SPD_0402 SPD_0403     TRUE 0.989 3.000 0.567 NA   0.704
 2017342 2017343 SPD_0403 SPD_0404   ilvB FALSE 0.112 201.000 0.004 1.000   0.776
 2017343 2017344 SPD_0404 SPD_0405 ilvB ilvN TRUE 0.998 -7.000 0.249 0.001 Y 0.968
 2017344 2017345 SPD_0405 SPD_0406 ilvN ilvC TRUE 0.941 66.000 0.130 0.003 Y 0.819
 2017345 2017346 SPD_0406 SPD_0407 ilvC   TRUE 0.259 77.000 0.000 NA   0.657
 2017346 2017347 SPD_0407 SPD_0408     FALSE 0.059 238.000 0.000 NA   0.480
 2017347 2017348 SPD_0408 SPD_0409   ilvA TRUE 0.544 50.000 0.000 NA   0.950
 2017348 2017349 SPD_0409 SPD_0410 ilvA   FALSE 0.034 735.000 0.000 NA   0.129
 2017350 2017351 SPD_0411 SPD_0412     TRUE 0.998 0.000 0.758 1.000 Y 0.950
 2017353 1619086 SPD_0413 SPD_0415     FALSE 0.064 142.000 0.000 NA   -0.324
 1619086 1619087 SPD_0415 SPD_0416     FALSE 0.052 198.000 0.000 NA   0.990
 2017354 2017355 SPD_0417 SPD_0418 bacA   TRUE 0.923 -7.000 0.000 NA   0.839
 2017358 2017359 SPD_0421 SPD_0422     FALSE 0.055 198.000 0.000 NA   0.931
 2017359 2017360 SPD_0422 SPD_0423     FALSE 0.025 1435.000 0.000 NA   0.974
 2017361 2017362 SPD_0424 SPD_0425     TRUE 0.983 2.000 0.250 NA   0.934
 2017362 2017363 SPD_0425 SPD_0426   lacF-1 FALSE 0.061 168.000 0.000 NA   0.954
 2017363 2017364 SPD_0426 SPD_0427 lacF-1 lacG-1 TRUE 0.938 10.000 0.000 1.000 Y 0.905
 2017364 2017365 SPD_0427 SPD_0428 lacG-1 lacE-1 TRUE 0.666 69.000 0.000 1.000 Y 0.873
 2017366 2017367 SPD_0429 SPD_0430     TRUE 0.990 4.000 0.017 0.005 Y 0.604
 2017368 2017369 SPD_0431 SPD_0432     TRUE 0.907 15.000 0.068 NA   NA
 2017369 2017370 SPD_0432 SPD_0433     TRUE 0.772 7.000 0.000 NA   NA
 2017370 2017371 SPD_0433 SPD_0434     FALSE 0.120 102.000 0.000 NA   0.807
 2017371 2017372 SPD_0434 SPD_0435     TRUE 0.992 -15.000 0.530 1.000   0.615
 2017372 2017373 SPD_0435 SPD_0436     FALSE 0.123 193.000 0.005 1.000 N 0.698
 2017373 2017374 SPD_0436 SPD_0437     FALSE 0.049 459.000 0.000 1.000   0.380
 2017374 2017375 SPD_0437 SPD_0438     TRUE 0.993 -10.000 0.600 1.000   0.945
 2017375 2017376 SPD_0438 SPD_0439     TRUE 0.925 28.000 0.105 1.000   0.569
 2017376 2017377 SPD_0439 SPD_0440     TRUE 0.831 5.000 0.000 1.000   NA
 2017377 2017378 SPD_0440 SPD_0441     FALSE 0.076 128.000 0.000 1.000 N NA
 2017378 2017379 SPD_0441 SPD_0442   pyrG FALSE 0.090 390.000 0.029 1.000 N -0.457
 2017381 2017382 SPD_0444 SPD_0445   pgk TRUE 0.526 90.000 0.002 1.000 Y 0.293
 2017382 2017383 SPD_0445 SPD_0446 pgk   FALSE 0.106 136.000 0.002 NA   0.892
 2017383 2017384 SPD_0446 SPD_0447     TRUE 0.621 77.000 0.154 NA   0.845
 2017384 2017385 SPD_0447 SPD_0448   glnA TRUE 0.927 37.000 0.179 1.000 N 0.794
 2017385 2017386 SPD_0448 SPD_0449 glnA   FALSE 0.036 473.000 0.000 NA   0.743
 2017386 2017387 SPD_0449 SPD_0451     FALSE 0.060 170.000 0.000 NA   -0.249
 2017388 2017389 SPD_0450 SPD_0452     TRUE 0.903 11.000 0.000 0.058   0.154
 2017389 2017390 SPD_0452 SPD_0453   hsdS TRUE 0.709 57.000 0.000 0.058 N 0.080
 2017390 2017391 SPD_0453 SPD_0454 hsdS hsdM TRUE 0.994 0.000 0.045 0.058 Y 0.386
 2017391 2017392 SPD_0454 SPD_0455 hsdM hsdR TRUE 0.993 13.000 0.564 0.058 Y -0.537
 2017393 2017394 SPD_0456 SPD_0457     TRUE 0.584 35.000 0.000 NA   NA
 2017394 2017395 SPD_0457 SPD_0458   hrcA FALSE 0.108 164.000 0.003 NA   0.004
 2017395 2017396 SPD_0458 SPD_0459 hrcA grpE TRUE 0.908 27.000 0.051 1.000 N 0.490
 2017396 2017397 SPD_0459 SPD_0460 grpE dnaK TRUE 0.338 480.000 0.026 0.007 Y -0.240
 2017397 2017398 SPD_0460 SPD_0461 dnaK dnaJ TRUE 0.491 760.000 0.196 0.005 Y -0.082
 2017399 2017400 SPD_0462 SPD_0463     TRUE 0.934 10.000 0.063 NA   0.390
 2017401 2017402 SPD_0464 SPD_0465     TRUE 0.986 -3.000 0.167 NA N 0.847
 2017404 2017405 SPD_0467 SPD_0468 blpS blpR TRUE 0.982 5.000 0.500 NA   -0.552
 2017405 2017406 SPD_0468 SPD_0469 blpR blpH TRUE 0.988 14.000 0.444 1.000 Y NA
 2017407 1619142 SPD_0470 SPD_0471 blpC blpB TRUE 0.495 57.000 0.000 NA   0.788
 1619142 1619143 SPD_0471 SPD_0472 blpB blpA TRUE 0.726 11.000 0.000 NA   -0.569
 2017408 2017409 SPD_0473 SPD_0474 blpY   TRUE 0.655 42.000 0.000 NA   0.662
 2017409 2017410 SPD_0474 SPD_0475     FALSE 0.072 151.000 0.000 NA   0.826
 2017410 2017411 SPD_0475 SPD_0476     FALSE 0.061 161.000 0.000 NA   0.982
 2017411 2017412 SPD_0476 SPD_0477   trmB TRUE 0.985 -3.000 0.154 NA   0.059
 2017412 2017413 SPD_0477 SPD_0478 trmB   FALSE 0.154 126.000 0.004 NA   0.289
 2017413 2017414 SPD_0478 SPD_0479   nusA TRUE 0.959 44.000 0.759 NA   0.890
 2017414 2017415 SPD_0479 SPD_0480 nusA   TRUE 0.984 22.000 0.323 NA Y 0.888
 2017415 2017416 SPD_0480 SPD_0481     TRUE 0.992 -7.000 0.408 NA N 0.117
 2017416 2017417 SPD_0481 SPD_0482   infB TRUE 0.983 17.000 0.223 NA Y 0.858
 2017417 2017418 SPD_0482 SPD_0483 infB rbfA TRUE 0.578 251.000 0.530 1.000 Y -0.606
 2017418 2017419 SPD_0483 SPD_0484 rbfA   FALSE 0.050 243.000 0.000 NA   -0.118
 2017419 2017420 SPD_0484 SPD_0485     TRUE 0.859 2.000 0.000 NA   NA
 2017420 2017421 SPD_0485 SPD_0486     TRUE 0.896 -3.000 0.000 NA   NA
 2017421 2017422 SPD_0486 SPD_0487     FALSE 0.040 301.000 0.000 NA   -0.217
 2017422 2017423 SPD_0487 SPD_0488     TRUE 0.988 0.000 0.229 NA   0.419
 2017423 2017424 SPD_0488 SPD_0489     TRUE 0.934 10.000 0.114 NA   -0.477
 2017424 2017425 SPD_0489 SPD_0490     TRUE 0.424 96.000 0.143 NA   0.850
 2017425 2017426 SPD_0490 SPD_0491     FALSE 0.040 412.000 0.000 1.000   0.965
 2017426 2017427 SPD_0491 SPD_0492     TRUE 0.981 -13.000 0.150 1.000   0.985
 2017427 2017428 SPD_0492 SPD_0493     TRUE 0.907 2.000 0.000 NA   0.622
 2017428 2017429 SPD_0493 SPD_0494   valS TRUE 0.801 12.000 0.000 NA   0.603
 2017429 2017430 SPD_0494 SPD_0495 valS   TRUE 0.239 70.000 0.000 NA   NA
 2017430 2017431 SPD_0495 SPD_0496     FALSE 0.031 283.000 0.000 NA   NA
 1619168 1619169 SPD_0497 SPD_0498     FALSE 0.211 77.000 0.000 NA   -0.356
 1619169 2017432 SPD_0498 SPD_0499     FALSE 0.059 226.000 0.000 NA   0.610
 1619171 2017433 SPD_0500 SPD_0501   licT FALSE 0.051 301.000 0.000 NA   0.291
 2017433 2017434 SPD_0501 SPD_0502 licT   TRUE 0.965 18.000 0.259 1.000   0.985
 2017434 2017435 SPD_0502 SPD_0503   bglA-2 TRUE 0.988 13.000 0.318 1.000 Y 0.757
 2017435 2017436 SPD_0503 SPD_0504 bglA-2 pheS FALSE 0.036 592.000 0.000 1.000 N 0.953
 2017436 2017437 SPD_0504 SPD_0505 pheS   TRUE 0.950 0.000 0.009 1.000   NA
 2017437 2017438 SPD_0505 SPD_0506   pheT TRUE 0.343 77.000 0.007 1.000   NA
 1619179 2017440 SPD_0508 SPD_0509     FALSE 0.103 123.000 0.000 NA   0.222
 2017440 2017441 SPD_0509 SPD_0510   metE FALSE 0.062 261.000 0.000 1.000   0.671
 2017441 2017442 SPD_0510 SPD_0511 metE metF TRUE 0.921 64.000 0.050 0.002 Y -0.407
 2017442 2017443 SPD_0511 SPD_0512 metF pnp FALSE 0.042 571.000 0.000 1.000 N -0.013
 2017443 2017444 SPD_0512 SPD_0513 pnp cysE TRUE 0.890 16.000 0.006 1.000 N 0.737
 2017444 2017445 SPD_0513 SPD_0514 cysE   TRUE 0.879 12.000 0.017 1.000   -0.680
 2017445 2017446 SPD_0514 SPD_0515   cysS TRUE 0.300 82.000 0.002 1.000   -0.040
 2017446 2017447 SPD_0515 SPD_0516 cysS   TRUE 0.982 -7.000 0.129 1.000   -0.373
 2017447 2017448 SPD_0516 SPD_0517     TRUE 0.938 4.000 0.017 NA   0.655
 2017448 2017449 SPD_0517 SPD_0518     FALSE 0.084 137.000 0.000 NA   0.696
 2017449 2017450 SPD_0518 SPD_0519     TRUE 0.932 -3.000 0.000 NA   0.653
 2017450 2017451 SPD_0519 SPD_0520     FALSE 0.084 146.000 0.000 NA   0.228
 2017451 2017452 SPD_0520 SPD_0521   vex1 FALSE 0.046 352.000 0.000 NA   0.468
 2017452 2017453 SPD_0521 SPD_0522 vex1 vex2 TRUE 0.995 13.000 0.917 1.000 Y 0.611
 2017453 2017454 SPD_0522 SPD_0523 vex2 vex3 TRUE 0.974 52.000 0.542 1.000 Y 0.694
 2017454 2017455 SPD_0523 SPD_0524 vex3 vncR TRUE 0.338 312.000 0.409 1.000 N 0.534
 2017455 2017456 SPD_0524 SPD_0525 vncR vncS TRUE 0.998 -3.000 1.000 1.000 Y 0.938
 2017456 2017457 SPD_0525 SPD_0526 vncS fba FALSE 0.090 141.000 0.000 1.000 N 0.892
 2017458 2017459 SPD_0527 SPD_0528     FALSE 0.110 258.000 0.000 0.066 N 0.813
 2017459 2017460 SPD_0528 SPD_0529     TRUE 0.997 10.000 0.947 0.014 Y 0.848
 2017460 2017461 SPD_0529 SPD_0530     TRUE 0.992 13.000 0.400 0.052 Y NA
 2017461 1619202 SPD_0530 SPD_0531     TRUE 0.713 11.000 0.000 NA   NA
 2017462 2017463 SPD_0532 SPD_0533 recJ   FALSE 0.063 175.000 0.000 1.000   -0.445
 2017463 2017464 SPD_0533 SPD_0534   estA TRUE 0.716 69.000 0.143 NA   0.620
 2017464 2017465 SPD_0534 SPD_0535 estA murM/fibA TRUE 0.302 112.000 0.100 NA   -0.248
 2017465 2017466 SPD_0535 SPD_0536 murM/fibA fibB TRUE 0.996 5.000 0.467 0.009 Y -0.173
 2017466 2017467 SPD_0536 SPD_0537 fibB   TRUE 0.275 116.000 0.087 1.000 N NA
 2017467 2017468 SPD_0537 SPD_0538   uvrC TRUE 0.715 40.000 0.002 1.000 N NA
 2017468 2017469 SPD_0538 SPD_0539 uvrC   TRUE 0.902 -10.000 0.000 1.000   NA
 2017471 2017472 SPD_0541 SPD_0542   pepV TRUE 0.809 13.000 0.000 1.000 N -0.164
 2017472 2017473 SPD_0542 SPD_0543 pepV   TRUE 0.756 54.000 0.031 NA N 0.540
 2017473 2017474 SPD_0543 SPD_0544     FALSE 0.061 164.000 0.000 NA   -0.263
 2017474 2017475 SPD_0544 SPD_0545     TRUE 0.920 1.000 0.000 NA   0.650
 2017475 2017476 SPD_0545 SPD_0546   brnQ FALSE 0.058 171.000 0.000 NA   0.982
 2017476 2017477 SPD_0546 SPD_0547 brnQ   FALSE 0.071 204.000 0.000 1.000 N 0.872
 2017477 2017478 SPD_0547 SPD_0548     TRUE 0.978 -31.000 0.007 1.000 Y -0.176
 2017478 2017479 SPD_0548 SPD_0549     TRUE 0.928 3.000 0.007 1.000 N -0.482
 2017479 2017480 SPD_0549 SPD_0550   rplK FALSE 0.042 309.000 0.000 1.000 N -0.463
 2017480 2017481 SPD_0550 SPD_0551 rplK rplA TRUE 0.795 208.000 0.838 0.037 Y NA
 2017483 2017484 SPD_0553 SPD_0554     FALSE 0.037 1044.000 0.000 1.000   0.647
 2017484 2017485 SPD_0554 SPD_0555     TRUE 0.970 2.000 0.098 NA   0.967
 2017485 2017486 SPD_0555 SPD_0556     TRUE 0.971 2.000 0.083 NA   0.773
 2017486 1619228 SPD_0556 SPD_0557     TRUE 0.409 64.000 0.000 NA   0.794
 1619228 2017487 SPD_0557 SPD_0558   prtA FALSE 0.032 732.000 0.000 NA   0.715
 2017487 2017488 SPD_0558 SPD_0559 prtA   FALSE 0.041 625.000 0.000 1.000   0.614
 2017488 2017489 SPD_0559 SPD_0560     TRUE 0.937 38.000 0.000 0.022 Y 0.904
 2017489 2017490 SPD_0560 SPD_0561     TRUE 0.893 48.000 0.000 0.036 Y NA
 2017490 2017491 SPD_0561 SPD_0562   bgaA FALSE 0.129 305.000 0.000 1.000 Y NA
 1619234 2017492 SPD_0563 SPD_0564     FALSE 0.040 212.000 0.000 NA   -0.636
 2017493 2017494 SPD_0565 SPD_0566     TRUE 0.695 58.000 0.025 NA   0.671
 2017494 2017495 SPD_0566 SPD_0567     TRUE 0.964 -22.000 0.042 1.000   -0.009
 2017495 2017496 SPD_0567 SPD_0568     TRUE 0.981 -7.000 0.100 NA   0.149
 2017496 2017497 SPD_0568 SPD_0569     TRUE 0.933 12.000 0.136 NA   NA
 2017497 2017498 SPD_0569 SPD_0570     FALSE 0.153 179.000 0.044 1.000   NA
 2017498 2017499 SPD_0570 SPD_0571   ccdA-1 FALSE 0.078 211.000 0.000 1.000   0.318
 2017499 2017500 SPD_0571 SPD_0572 ccdA-1   TRUE 0.982 20.000 0.250 1.000 Y NA
 2017500 2017501 SPD_0572 SPD_0573   msrAB2 TRUE 0.730 188.000 0.875 1.000 Y NA
 2017501 2017502 SPD_0573 SPD_0574 msrAB2   TRUE 0.282 268.000 0.240 1.000   0.159
 2017502 2017503 SPD_0574 SPD_0575     TRUE 0.997 -3.000 0.480 0.013   0.545
 2017503 2017504 SPD_0575 SPD_0576     FALSE 0.164 116.000 0.020 NA   -0.577
 2017504 2017505 SPD_0576 SPD_0577   zmpB TRUE 0.888 22.000 0.020 NA   0.436
 2017505 2017506 SPD_0577 SPD_0578 zmpB pabB TRUE 0.468 70.000 0.006 1.000 N 0.995
 2017506 2017507 SPD_0578 SPD_0579 pabB   FALSE 0.070 158.000 0.000 NA   0.843
 2017507 2017508 SPD_0579 SPD_0580   gki FALSE 0.141 136.000 0.015 NA   0.977
 2017508 2017509 SPD_0580 SPD_0581 gki thyA TRUE 0.251 97.000 0.006 1.000 N 0.668
 2017511 2017512 SPD_0583 SPD_0584 miaA hflX TRUE 0.963 -7.000 0.027 1.000   NA
 2017512 2017513 SPD_0584 SPD_0585 hflX   TRUE 0.950 -7.000 0.014 NA   -0.700
 2017513 2017514 SPD_0585 SPD_0586   rnz TRUE 0.898 15.000 0.022 NA   0.667
 2017514 2017515 SPD_0586 SPD_0587 rnz   TRUE 0.931 21.000 0.074 1.000   0.004
 2017517 2017518 SPD_0589 SPD_0590     TRUE 0.970 0.000 0.035 NA   0.061
 2017518 2017519 SPD_0590 SPD_0591     FALSE 0.088 119.000 0.000 NA   0.906
 2017521 2017522 SPD_0593 SPD_0594     TRUE 0.882 20.000 0.015 NA   0.737
 2017522 2017523 SPD_0594 SPD_0595     FALSE 0.036 316.000 0.000 NA   0.971
 2017523 2017524 SPD_0595 SPD_0596     TRUE 0.305 71.000 0.000 NA   -0.022
 2017524 2017525 SPD_0596 SPD_0597     TRUE 0.994 2.000 1.000 NA   NA
 2017525 2017526 SPD_0597 SPD_0598   murD FALSE 0.102 104.000 0.000 1.000 N NA
 2017526 2017527 SPD_0598 SPD_0599 murD murG TRUE 0.981 4.000 0.060 1.000 Y -0.630
 2017527 2017528 SPD_0599 SPD_0600 murG divIB TRUE 0.974 10.000 0.072 NA Y 0.565
 2017528 2017529 SPD_0600 SPD_0601 divIB   FALSE 0.092 131.000 0.000 NA   0.471
 2017529 2017530 SPD_0601 SPD_0602     TRUE 0.807 12.000 0.000 NA   0.160
 2017530 2017531 SPD_0602 SPD_0603     FALSE 0.033 392.000 0.000 NA   -0.301
 2017531 2017532 SPD_0603 SPD_0604     FALSE 0.052 343.000 0.000 1.000   0.611
 2017532 1619276 SPD_0604 SPD_0605     FALSE 0.067 210.000 0.000 NA   0.381
 1619276 2017533 SPD_0605 SPD_0606     TRUE 0.932 -7.000 0.000 NA   0.175
 2017534 2017535 SPD_0608 SPD_0609 pyrF pyrE TRUE 0.930 34.000 0.006 1.000 Y 0.698
 2017535 2017536 SPD_0609 SPD_0610 pyrE   FALSE 0.070 180.000 0.000 NA   0.621
 2017536 2017537 SPD_0610 SPD_0611     TRUE 0.700 96.000 0.667 NA   0.424
 2017537 2017538 SPD_0611 SPD_0612     TRUE 0.994 0.000 0.667 NA   0.901
 2017538 2017539 SPD_0612 SPD_0613     TRUE 0.993 4.000 1.000 NA   0.488
 2017539 2017540 SPD_0613 SPD_0614     TRUE 0.996 -3.000 1.000 NA   0.467
 1619286 2017541 SPD_0615 SPD_0616     TRUE 0.781 12.000 0.000 NA   0.872
 2017541 2017542 SPD_0616 SPD_0617     TRUE 0.997 1.000 0.773 1.000 Y -0.710
 2017542 2017543 SPD_0617 SPD_0618     TRUE 0.998 -40.000 0.841 0.014 Y 0.696
 2017544 2017545 SPD_0619 SPD_0620   lysS FALSE 0.112 128.000 0.000 1.000   0.216
 2017545 2017546 SPD_0620 SPD_0621 lysS lctO FALSE 0.043 625.000 0.000 1.000 N 0.090
 2017546 2017547 SPD_0621 SPD_0622 lctO   FALSE 0.038 555.000 0.000 NA N 0.626
 2017547 2017548 SPD_0622 SPD_0623   thiM FALSE 0.045 289.000 0.000 NA N 0.889
 2017548 2017549 SPD_0623 SPD_0624 thiM thiE-1 TRUE 0.995 2.000 0.061 0.005 Y 0.186
 2017549 2017550 SPD_0624 SPD_0625 thiE-1   FALSE 0.023 558.000 0.000 NA   NA
 2017550 2017551 SPD_0625 SPD_0626     TRUE 0.877 1.000 0.000 NA   NA
 2017551 2017552 SPD_0626 SPD_0627     TRUE 0.859 2.000 0.000 NA   NA
 2017552 2017553 SPD_0627 SPD_0628   tenA TRUE 0.896 11.000 0.050 NA   NA
 2017553 2017554 SPD_0628 SPD_0629 tenA thiW TRUE 0.949 5.000 0.052 NA   0.646
 2017554 2017555 SPD_0629 SPD_0630 thiW   TRUE 0.973 0.000 0.059 NA   -0.139
 2017555 2017556 SPD_0630 SPD_0631   thiE-2 TRUE 0.998 -7.000 0.190 0.005 Y 0.353
 2017558 2017559 SPD_0633 SPD_0634     TRUE 0.962 11.000 0.250 NA   0.837
 2017559 2017560 SPD_0634 SPD_0635     TRUE 0.953 10.000 0.167 NA   -0.072
 2017560 2017561 SPD_0635 SPD_0636   spxB FALSE 0.058 207.000 0.000 1.000 N -0.464
 2017561 2017562 SPD_0636 SPD_0637 spxB   TRUE 0.271 111.000 0.083 NA   -0.452
 2017563 2017564 SPD_0638 SPD_0639     TRUE 0.890 -112.000 0.000 NA   0.419
 1619311 2017565 SPD_0640 SPD_0641   manA FALSE 0.102 121.000 0.000 NA   0.122
 2017567 2017568 SPD_0644 SPD_0645     TRUE 0.743 20.000 0.000 1.000   NA
 2017568 2017569 SPD_0645 SPD_0646     TRUE 0.617 59.000 0.012 NA   0.881
 2017570 2017571 SPD_0647 SPD_0648     TRUE 0.841 19.000 0.000 1.000 N 0.357
 2017571 2017572 SPD_0648 SPD_0649   upp TRUE 0.787 68.000 0.041 1.000 Y NA
 2017572 2017573 SPD_0649 SPD_0650 upp clpP FALSE 0.110 174.000 0.010 1.000 N NA
 2017573 2017574 SPD_0650 SPD_0651 clpP   TRUE 0.423 79.000 0.065 NA   NA
 2017574 2017575 SPD_0651 SPD_0652   livJ TRUE 0.311 102.000 0.109 NA   NA
 2017575 2017576 SPD_0652 SPD_0653 livJ livH TRUE 0.383 268.000 0.150 1.000 Y -0.430
 2017576 2017577 SPD_0653 SPD_0654 livH livM TRUE 0.995 4.000 0.363 0.050 Y -0.819
 2017577 2017578 SPD_0654 SPD_0655 livM livG TRUE 0.997 0.000 0.349 1.000 Y 0.427
 2017578 2017579 SPD_0655 SPD_0656 livG livF TRUE 0.995 0.000 0.128 0.038 Y NA
 2017579 2017580 SPD_0656 SPD_0657 livF   FALSE 0.176 414.000 0.214 1.000   NA
 2017580 2017581 SPD_0657 SPD_0658   prfB FALSE 0.069 214.000 0.000 1.000   0.016
 2017581 2017582 SPD_0658 SPD_0659 prfB ftsE TRUE 0.937 18.000 0.053 1.000 N 0.271
 2017582 2017583 SPD_0659 SPD_0660 ftsE ftsX TRUE 0.997 -7.000 0.431 1.000 Y 0.033
 2017583 2017584 SPD_0660 SPD_0661 ftsX exp5 FALSE 0.104 286.000 0.000 0.089 N 0.684
 2017584 2017585 SPD_0661 SPD_0662 exp5   TRUE 0.942 52.000 0.610 NA   0.543
 2017585 2017586 SPD_0662 SPD_0663     FALSE 0.081 140.000 0.000 NA   0.738
 2017586 2017587 SPD_0663 SPD_0664   metK FALSE 0.080 215.000 0.000 1.000 N 0.357
 2017587 2017588 SPD_0664 SPD_0665 metK pyrDa FALSE 0.047 553.000 0.000 1.000 N 0.474
 2017588 2017589 SPD_0665 SPD_0666 pyrDa holA TRUE 0.761 34.000 0.002 1.000 N -0.422
 2017589 2017590 SPD_0666 SPD_0667 holA sodA FALSE 0.155 173.000 0.012 1.000 N 0.116
 2017590 2017591 SPD_0667 SPD_0668 sodA   FALSE 0.159 157.000 0.021 NA   0.105
 2017591 2017592 SPD_0668 SPD_0669     TRUE 0.889 21.000 0.016 NA   0.389
 2017592 2017593 SPD_0669 SPD_0670     TRUE 0.807 38.000 0.012 NA   0.568
 2017593 2017594 SPD_0670 SPD_0671     TRUE 0.958 2.000 0.027 NA   0.034
 2017595 2017596 SPD_0672 SPD_0673     FALSE 0.178 84.000 0.000 NA   -0.129
 2017597 2017598 SPD_0674 SPD_0675 rpsP   TRUE 0.968 20.000 0.385 1.000   -0.439
 2017598 2017599 SPD_0675 SPD_0676     FALSE 0.038 577.000 0.000 NA   0.346
 2017599 2017600 SPD_0676 SPD_0677     TRUE 0.877 1.000 0.000 NA   NA
 2017600 2017601 SPD_0677 SPD_0678   rimM TRUE 0.612 31.000 0.000 NA   NA
 2017601 2017602 SPD_0678 SPD_0679 rimM trmD TRUE 0.998 -10.000 0.672 1.000 Y 0.454
 2017602 2017603 SPD_0679 SPD_0680 trmD   TRUE 0.861 12.000 0.002 1.000   -0.093
 2017606 2017607 SPD_0682 SPD_0684     TRUE 0.466 61.000 0.000 NA   0.213
 2017607 2017608 SPD_0684 SPD_0685   gor FALSE 0.069 197.000 0.000 NA   0.215
 2017609 2017610 SPD_0686 SPD_0687     TRUE 0.995 -16.000 0.923 1.000 N -0.255
 2017610 2017611 SPD_0687 SPD_0688     TRUE 0.997 2.000 0.923 1.000 Y -0.694
 2017611 2017612 SPD_0688 SPD_0689   metG FALSE 0.170 124.000 0.003 1.000 N 0.563
 2017612 2017613 SPD_0689 SPD_0690 metG   TRUE 0.599 50.000 0.000 NA   0.513
 2017613 2017614 SPD_0690 SPD_0691     FALSE 0.179 90.000 0.000 NA   0.161
 2017614 2017615 SPD_0691 SPD_0692     TRUE 0.985 4.000 0.429 NA   0.788
 2017615 2017616 SPD_0692 SPD_0693     TRUE 0.778 15.000 0.000 NA   -0.085
 2017616 2017617 SPD_0693 SPD_0694     TRUE 0.336 79.000 0.008 NA   0.851
 2017617 2017618 SPD_0694 SPD_0695     TRUE 0.994 -7.000 0.710 NA   0.055
 2017618 2017619 SPD_0695 SPD_0696     TRUE 0.942 11.000 0.067 1.000 N 0.429
 2017619 2017620 SPD_0696 SPD_0697     TRUE 0.944 8.000 0.091 1.000 N NA
 2017620 2017621 SPD_0697 SPD_0698     TRUE 0.599 42.000 0.000 1.000   NA
 2017621 2017622 SPD_0698 SPD_0699     TRUE 0.892 -25.000 0.000 NA   0.746
 2017622 2017623 SPD_0699 SPD_0700   pepN FALSE 0.063 123.000 0.000 NA   NA
 2017623 2017624 SPD_0700 SPD_0701 pepN ciaR TRUE 0.833 43.000 0.061 1.000 N NA
 2017624 2017625 SPD_0701 SPD_0702 ciaR ciaH TRUE 0.997 -10.000 0.606 1.000 Y 0.636
 2017627 2017628 SPD_0704 SPD_0705     FALSE 0.072 200.000 0.000 1.000 N 0.877
 2017628 2017629 SPD_0705 SPD_0706     TRUE 0.840 37.000 0.019 1.000 N 0.822
 2017629 2017630 SPD_0706 SPD_0707     TRUE 0.880 11.000 0.008 NA   0.578
 2017630 2017631 SPD_0707 SPD_0708     FALSE 0.127 85.000 0.000 NA   NA
 2017631 2017632 SPD_0708 SPD_0709   gyrB TRUE 0.866 15.000 0.013 1.000   NA
 2017632 2017633 SPD_0709 SPD_0710 gyrB ezrA TRUE 0.389 82.000 0.011 1.000 N 0.499
 2017633 2017634 SPD_0710 SPD_0711 ezrA   FALSE 0.028 794.000 0.000 NA   0.895
 2017634 2017635 SPD_0711 SPD_0712     TRUE 0.603 32.000 0.000 NA   NA
 1619384 2017636 SPD_0713 SPD_0714     FALSE 0.033 261.000 0.000 NA   NA
 2017636 2017637 SPD_0714 SPD_0715     FALSE 0.203 165.000 0.114 NA   NA
 2017639 2017640 SPD_0717 SPD_0718 clpE   FALSE 0.057 229.000 0.000 NA   0.692
 2017641 2017642 SPD_0719 SPD_0720     TRUE 0.998 0.000 0.640 1.000 Y 0.865
 2017642 2017643 SPD_0720 SPD_0721   folD FALSE 0.191 133.000 0.017 1.000 N 0.712
 2017643 2017644 SPD_0721 SPD_0722 folD   FALSE 0.177 142.000 0.030 NA N 0.828
 2017644 2017645 SPD_0722 SPD_0723   rpiA FALSE 0.155 282.000 0.000 NA Y 0.071
 2017645 2017646 SPD_0723 SPD_0724 rpiA deoB TRUE 0.964 14.000 0.018 1.000 Y 0.507
 2017646 1619396 SPD_0724 SPD_0725 deoB   TRUE 0.896 2.000 0.000 NA   -0.121
 1619396 2017647 SPD_0725 SPD_0726     TRUE 0.807 16.000 0.000 NA   0.488
 2017647 2017648 SPD_0726 SPD_0727     FALSE 0.036 476.000 0.000 1.000   -0.295
 2017648 2017649 SPD_0727 SPD_0728     TRUE 0.665 46.000 0.000 1.000   0.216
 2017649 2017650 SPD_0728 SPD_0729     TRUE 0.777 25.000 0.000 1.000   0.042
 2017650 2017651 SPD_0729 SPD_0730   deoD FALSE 0.033 658.000 0.000 1.000   -0.287
 2017652 2017653 SPD_0731 SPD_0732   rpsT TRUE 0.603 53.000 0.002 1.000 N NA
 2017653 2017654 SPD_0732 SPD_0733 rpsT coaA TRUE 0.501 68.000 0.014 1.000 N NA
 2017655 2017656 SPD_0734 SPD_0735     FALSE 0.040 207.000 0.000 NA   NA
 2017656 2017657 SPD_0735 SPD_0736   pdp TRUE 0.971 -3.000 0.044 1.000 N NA
 2017657 2017658 SPD_0736 SPD_0737 pdp deoC TRUE 0.980 18.000 0.106 1.000 Y 0.556
 2017658 2017659 SPD_0737 SPD_0738 deoC cdd-1 TRUE 0.990 -13.000 0.051 1.000 Y 0.064
 2017659 2017660 SPD_0738 SPD_0739 cdd-1   TRUE 0.509 90.000 0.200 1.000   -0.627
 2017660 2017661 SPD_0739 SPD_0740     FALSE 0.164 144.000 0.024 1.000   -0.328
 2017661 2017662 SPD_0740 SPD_0741     TRUE 0.993 -7.000 0.438 1.000   0.378
 2017662 2017663 SPD_0741 SPD_0742     TRUE 0.995 3.000 0.720 0.049   0.133
 2017663 1619414 SPD_0742 SPD_0743     FALSE 0.190 85.000 0.000 NA   0.608
 1619414 1619415 SPD_0743 SPD_0744     TRUE 0.927 0.000 0.000 NA   0.592
 2017665 2017666 SPD_0746 SPD_0747 parE   FALSE 0.097 121.000 0.000 NA   0.022
 2017666 2017667 SPD_0747 SPD_0748   parC FALSE 0.073 165.000 0.000 NA   0.723
 2017667 2017668 SPD_0748 SPD_0749 parC ilvE TRUE 0.304 130.000 0.086 1.000 N 0.351
 2017668 2017669 SPD_0749 SPD_0750 ilvE   TRUE 0.532 56.000 0.000 NA   0.238
 2017669 2017670 SPD_0750 SPD_0751     TRUE 0.407 65.000 0.000 NA   0.640
 2017670 2017671 SPD_0751 SPD_0752     TRUE 0.996 -3.000 0.939 NA   0.249
 2017671 2017672 SPD_0752 SPD_0753   pcp TRUE 0.967 15.000 0.300 NA   0.663
 2017672 2017673 SPD_0753 SPD_0754 pcp   FALSE 0.078 168.000 0.000 NA   0.431
 2017673 1619426 SPD_0754 SPD_0755     TRUE 0.474 50.000 0.000 NA   NA
 1619426 1619427 SPD_0755 SPD_0756     TRUE 0.722 10.000 0.000 NA   NA
 1619427 2017674 SPD_0756 SPD_0757   rpsA FALSE 0.051 162.000 0.000 NA   -0.575
 2017675 2017676 SPD_0759 SPD_0760   dnaX TRUE 0.971 0.000 0.030 NA N 0.214
 2017676 2017677 SPD_0760 SPD_0761 dnaX   TRUE 0.870 28.000 0.067 NA   -0.774
 2017677 2017678 SPD_0761 SPD_0762   sufC FALSE 0.108 150.000 0.003 NA   -0.074
 2017678 2017679 SPD_0762 SPD_0763 sufC sufD TRUE 0.973 28.000 0.139 1.000 Y 0.601
 2017679 2017680 SPD_0763 SPD_0764 sufD sufS TRUE 0.982 11.000 0.606 1.000 N -0.092
 2017680 2017681 SPD_0764 SPD_0765 sufS   TRUE 0.989 -13.000 0.292 1.000 N 0.843
 2017681 2017682 SPD_0765 SPD_0766   sufB TRUE 0.933 54.000 0.152 0.002 N -0.031
 2017684 1619440 SPD_0768 SPD_0769   ssrA FALSE 0.032 646.000 0.000 NA   0.790
 2017685 2017686 SPD_0771 SPD_0772 lacR1   TRUE 0.998 -3.000 0.721 1.000 Y 0.856
 2017686 2017687 SPD_0772 SPD_0773     TRUE 0.998 -3.000 0.816 1.000 Y 0.297
 2017687 2017688 SPD_0773 SPD_0774     TRUE 0.461 86.000 0.010 0.063 N 0.744
 2017690 2017691 SPD_0776 SPD_0777   thiI TRUE 0.978 9.000 0.349 1.000 N 0.113
 2017691 2017692 SPD_0777 SPD_0778 thiI   FALSE 0.142 135.000 0.005 NA   0.288
 2017692 2017693 SPD_0778 SPD_0779     TRUE 0.747 22.000 0.000 NA   -0.142
 2017693 2017694 SPD_0779 SPD_0780     TRUE 0.886 0.000 0.000 NA   NA
 2017694 2017695 SPD_0780 SPD_0781     TRUE 0.930 13.000 0.130 NA   NA
 2017695 2017696 SPD_0781 SPD_0782     FALSE 0.034 508.000 0.000 1.000 N -0.411
 2017696 2017697 SPD_0782 SPD_0783     TRUE 0.963 13.000 0.092 0.054   -0.037
 2017697 2017698 SPD_0783 SPD_0784     TRUE 0.679 79.000 0.048 0.004   0.707
 2017698 2017699 SPD_0784 SPD_0785     FALSE 0.054 271.000 0.000 NA   0.449
 2017700 2017701 SPD_0786 SPD_0787   pepX TRUE 0.797 17.000 0.000 1.000   0.988
 2017702 2017703 SPD_0788 SPD_0789 dnaE pfkA TRUE 0.533 83.000 0.098 1.000 N 0.755
 2017703 2017704 SPD_0789 SPD_0790 pfkA pyk TRUE 0.969 59.000 0.261 0.006 Y 0.804
 2017706 2017707 SPD_0792 SPD_0793     TRUE 0.787 13.000 0.000 NA   -0.003
 2017708 2017709 SPD_0795 SPD_0796     TRUE 0.871 4.000 0.000 NA   0.014
 2017710 2017711 SPD_0797 SPD_0798     TRUE 0.995 -3.000 0.841 NA   -0.269
 2017711 2017712 SPD_0798 SPD_0799     TRUE 0.973 1.000 0.091 NA   0.986
 2017713 2017714 SPD_0800 SPD_0801     TRUE 0.896 -37.000 0.000 NA   0.274
 2017714 2017715 SPD_0801 SPD_0802     FALSE 0.117 102.000 0.000 NA N 0.894
 2017715 2017716 SPD_0802 SPD_0803     FALSE 0.096 495.000 0.000 NA Y -0.556
 2017716 2017717 SPD_0803 SPD_0804     FALSE 0.028 973.000 0.000 NA N 0.909
 2017717 2017718 SPD_0804 SPD_0805     TRUE 0.994 2.000 0.855 1.000   -0.341
 2017719 2017720 SPD_0806 SPD_0807     FALSE 0.212 80.000 0.000 NA   0.803
 2017720 2017721 SPD_0807 SPD_0808     FALSE 0.036 233.000 0.000 NA   NA
 2017723 2017724 SPD_0811 SPD_0812 speE lys1 TRUE 0.989 -3.000 0.036 1.000 Y NA
 2017724 2017725 SPD_0812 SPD_0813 lys1 nspC TRUE 0.996 0.000 0.444 1.000 Y NA
 2017725 2017726 SPD_0813 SPD_0814 nspC   TRUE 0.988 -3.000 0.025 1.000 Y NA
 2017726 2017727 SPD_0814 SPD_0815     TRUE 0.928 10.000 0.084 1.000   NA
 2017729 2017730 SPD_0817 SPD_0818     FALSE 0.036 242.000 0.000 NA   NA
 2017730 2017731 SPD_0818 SPD_0819   lspA TRUE 0.981 -3.000 0.119 1.000 N NA
 2017731 2017732 SPD_0819 SPD_0820 lspA rluD TRUE 0.974 -10.000 0.082 1.000 N NA
 2017732 2017733 SPD_0820 SPD_0821 rluD cbpE TRUE 0.901 3.000 0.000 1.000   0.740
 2017733 2017734 SPD_0821 SPD_0822 cbpE proB FALSE 0.189 101.000 0.003 1.000   -0.241
 2017734 2017735 SPD_0822 SPD_0823 proB proA TRUE 0.994 10.000 0.281 0.002 Y -0.104
 2017735 2017736 SPD_0823 SPD_0824 proA proC TRUE 0.990 4.000 0.009 0.002 Y 0.196
 2017736 2017737 SPD_0824 SPD_0825 proC tmk FALSE 0.114 116.000 0.000 1.000 N -0.153
 2017737 2017738 SPD_0825 SPD_0826 tmk holB TRUE 0.989 -3.000 0.254 1.000 N -0.347
 2017738 2017739 SPD_0826 SPD_0827 holB   TRUE 0.799 40.000 0.038 NA   NA
 2017739 2017740 SPD_0827 SPD_0828     TRUE 0.941 3.000 0.043 NA   NA
 2017740 2017741 SPD_0828 SPD_0829     FALSE 0.063 227.000 0.000 NA   0.272
 2017741 2017742 SPD_0829 SPD_0831     FALSE 0.119 109.000 0.000 NA   0.525
 2017743 2017744 SPD_0830 SPD_0832     TRUE 0.977 26.000 0.750 NA   0.168
 2017745 2017746 SPD_0833 SPD_0834 gid pyrH TRUE 0.320 84.000 0.002 1.000 N 0.442
 2017746 2017747 SPD_0834 SPD_0835 pyrH frr TRUE 0.985 9.000 0.626 1.000 N 0.758
 2017747 2017748 SPD_0835 SPD_0836 frr   TRUE 0.831 21.000 0.012 NA   NA
 2017748 2017749 SPD_0836 SPD_0837     TRUE 0.871 9.000 0.013 NA   NA
 2017749 2017750 SPD_0837 SPD_0838     TRUE 0.285 86.000 0.010 NA   0.812
 2017750 2017751 SPD_0838 SPD_0839     FALSE 0.066 193.000 0.000 1.000   -0.265
 2017751 2017752 SPD_0839 SPD_0840     TRUE 0.961 3.000 0.065 NA   0.003
 2017753 2017754 SPD_0842 SPD_0843   celA TRUE 0.731 68.000 0.125 1.000 N -0.049
 2017754 2017755 SPD_0843 SPD_0844 celA celB TRUE 0.946 -16.000 0.002 1.000   0.145
 2017755 2017756 SPD_0844 SPD_0845 celB   FALSE 0.051 399.000 0.000 1.000   0.256
 2017756 2017757 SPD_0845 SPD_0846     TRUE 0.498 115.000 0.500 NA   -0.809
 2017757 2017758 SPD_0846 SPD_0847   infC FALSE 0.054 280.000 0.000 NA   0.420
 2017758 2017759 SPD_0847 SPD_0848 infC rpmI TRUE 0.988 33.000 0.652 1.000 Y 0.248
 2017759 2017760 SPD_0848 SPD_0849 rpmI rplT TRUE 0.989 52.000 0.928 0.026 Y NA
 2017760 2017761 SPD_0849 SPD_0850 rplT gloA TRUE 0.565 58.000 0.003 1.000 N NA
 2017761 2017762 SPD_0850 SPD_0851 gloA pyrK FALSE 0.045 250.000 0.000 1.000 N NA
 2017762 2017763 SPD_0851 SPD_0852 pyrK pyrDb TRUE 0.981 11.000 0.592 1.000 N -0.077
 2017763 2017764 SPD_0852 SPD_0853 pyrDb lytB FALSE 0.176 99.000 0.005 1.000   NA
 2017766 2017767 SPD_0855 SPD_0856   dgkA TRUE 0.963 -19.000 0.035 NA   0.315
 2017767 2017768 SPD_0856 SPD_0857 dgkA era TRUE 0.918 17.000 0.063 1.000   NA
 2017768 2017769 SPD_0857 SPD_0858 era mutM TRUE 0.666 49.000 0.004 1.000   NA
 2017769 2017770 SPD_0858 SPD_0859 mutM coaE TRUE 0.980 0.000 0.066 1.000 N 0.459
 2017770 2017771 SPD_0859 SPD_0860 coaE pmrA TRUE 0.959 -13.000 0.007 1.000 N 0.577
 2017771 2017772 SPD_0860 SPD_0861 pmrA secG FALSE 0.166 189.000 0.007 0.062 N -0.837
 2017772 2017773 SPD_0861 SPD_0862 secG rnr TRUE 0.294 102.000 0.064 1.000 N -0.696
 2017773 2017774 SPD_0862 SPD_0863 rnr smpB TRUE 0.984 -37.000 0.143 0.031 N NA
 2017774 2017775 SPD_0863 SPD_0864 smpB tehB TRUE 0.832 16.000 0.002 1.000 N NA
 2017775 2017776 SPD_0864 SPD_0865 tehB coiA TRUE 0.299 73.000 0.000 NA   0.706
 2017776 2017777 SPD_0865 SPD_0866 coiA pepF TRUE 0.955 19.000 0.204 NA   -0.045
 2017777 2017778 SPD_0866 SPD_0867 pepF   TRUE 0.965 2.000 0.024 1.000   0.397
 2017778 2017779 SPD_0867 SPD_0868     TRUE 0.591 67.000 0.016 1.000   0.060
 2017780 2017781 SPD_0869 SPD_0870     FALSE 0.042 760.000 0.000 1.000   0.306
 2017781 2017782 SPD_0870 SPD_0871     TRUE 0.962 0.000 0.018 NA   0.829
 2017782 2017783 SPD_0871 SPD_0872     TRUE 0.954 0.000 0.012 NA   0.964
 2017783 2017784 SPD_0872 SPD_0873     TRUE 0.365 95.000 0.062 NA   0.187
 2017785 2017786 SPD_0874 SPD_0875 glmU   TRUE 0.892 10.000 0.015 1.000 N -0.426
 2017786 2017787 SPD_0875 SPD_0876     TRUE 0.890 12.000 0.025 NA   0.979
 2017787 2017788 SPD_0876 SPD_0877   mtnN TRUE 0.908 17.000 0.041 NA   0.915
 2017788 2017789 SPD_0877 SPD_0878 mtnN   TRUE 0.407 77.000 0.006 1.000   0.777
 2017789 2017790 SPD_0878 SPD_0879     TRUE 0.539 98.000 0.105 0.041   0.826
 2017790 2017791 SPD_0879 SPD_0880     TRUE 0.959 9.000 0.105 1.000 N 0.291
 2017791 1619552 SPD_0880 SPD_0881     FALSE 0.053 196.000 0.000 NA   0.978
 1619552 2017792 SPD_0881 SPD_0882     FALSE 0.081 159.000 0.000 NA   0.268
 2017792 2017793 SPD_0882 SPD_0883     FALSE 0.048 161.000 0.000 NA   NA
 2017793 2017794 SPD_0883 SPD_0884     TRUE 0.544 42.000 0.000 NA   NA
 2017794 2017795 SPD_0884 SPD_0885   ccdA-2 FALSE 0.059 231.000 0.000 NA   0.150
 2017795 2017796 SPD_0885 SPD_0886 ccdA-2   TRUE 0.992 11.000 0.500 1.000 Y 0.442
 2017796 2017797 SPD_0886 SPD_0887     FALSE 0.052 374.000 0.000 1.000 N 0.699
 2017797 2017798 SPD_0887 SPD_0888   lmb FALSE 0.101 143.000 0.000 1.000 N 0.567
 2017798 2017799 SPD_0888 SPD_0889 lmb phtD TRUE 0.979 8.000 0.500 NA   -0.386
 2017799 2017800 SPD_0889 SPD_0890 phtD phtE FALSE 0.063 210.000 0.000 NA   0.122
 2017800 1619562 SPD_0890 SPD_0891 phtE   FALSE 0.020 830.000 0.000 NA   NA
 1619562 1619563 SPD_0891 SPD_0892     TRUE 0.558 40.000 0.000 NA   NA
 1619563 2017801 SPD_0892 SPD_0893     FALSE 0.055 248.000 0.000 NA   0.591
 2017804 2017805 SPD_0896 SPD_0897 mscL   TRUE 0.403 82.000 0.003 0.064   -0.574
 2017806 1619570 SPD_0898 SPD_0899     FALSE 0.087 100.000 0.000 NA   NA
 1619570 2017807 SPD_0899 SPD_0900   asd FALSE 0.028 343.000 0.000 NA   NA
 2017807 2017808 SPD_0900 SPD_0901 asd dapA TRUE 0.890 56.000 0.063 1.000 Y NA
 2017809 2017810 SPD_0902 SPD_0903 trmE xylH FALSE 0.103 137.000 0.003 1.000   NA
 2017811 2017812 SPD_0904 SPD_0905 tdk   TRUE 0.957 -10.000 0.004 1.000   0.622
 2017812 2017813 SPD_0905 SPD_0906   prfA TRUE 0.879 10.000 0.002 1.000   0.492
 2017813 2017814 SPD_0906 SPD_0907 prfA hemK TRUE 0.991 0.000 0.084 1.000 Y -0.529
 2017814 2017815 SPD_0907 SPD_0908 hemK   TRUE 0.986 -16.000 0.029 NA Y 0.336
 2017815 2017816 SPD_0908 SPD_0909     TRUE 0.953 2.000 0.012 NA   0.223
 2017816 2017817 SPD_0909 SPD_0910   glyA TRUE 0.729 62.000 0.056 1.000   0.020
 2017817 2017818 SPD_0910 SPD_0911 glyA   TRUE 0.973 -25.000 0.103 NA   0.283
 2017818 2017819 SPD_0911 SPD_0912   pvaA TRUE 0.982 0.000 0.128 NA   0.082
 2017819 2017820 SPD_0912 SPD_0913 pvaA   TRUE 0.438 74.000 0.019 NA   0.978
 2017820 2017821 SPD_0913 SPD_0914   rumA-1 TRUE 0.397 74.000 0.019 NA   NA
 2017821 2017822 SPD_0914 SPD_0915 rumA-1   FALSE 0.025 1349.000 0.000 1.000 N NA
 2017822 2017823 SPD_0915 SPD_0916     TRUE 0.998 -10.000 0.778 1.000 Y 0.286
 2017823 2017824 SPD_0916 SPD_0917     TRUE 0.999 0.000 0.800 0.047 Y 0.968
 2017824 2017825 SPD_0917 SPD_0918     TRUE 0.996 0.000 0.250 1.000 Y 0.260
 2017825 2017826 SPD_0918 SPD_0919     FALSE 0.033 902.000 0.000 NA   0.501
 2017826 2017827 SPD_0919 SPD_0920     FALSE 0.027 684.000 0.000 NA   0.989
 2017827 2017828 SPD_0920 SPD_0921     TRUE 0.648 92.000 0.400 NA   0.433
 2017828 2017829 SPD_0921 SPD_0922     FALSE 0.048 223.000 0.000 NA   0.979
 2017829 2017830 SPD_0922 SPD_0923     FALSE 0.047 313.000 0.000 NA   0.139
 2017830 2017831 SPD_0923 SPD_0924     TRUE 0.741 62.000 0.125 NA   -0.381
 2017831 2017832 SPD_0924 SPD_0925     TRUE 0.920 0.000 0.000 NA   0.840
 2017832 2017833 SPD_0925 SPD_0926     TRUE 0.310 112.000 0.077 NA N 0.565
 2017833 2017834 SPD_0926 SPD_0927   nplT FALSE 0.102 139.000 0.000 1.000 N 0.059
 2017834 2017835 SPD_0927 SPD_0928 nplT   TRUE 0.310 86.000 0.016 NA   0.820
 2017835 2017836 SPD_0928 SPD_0929     TRUE 0.533 46.000 0.000 NA   -0.418
 2017836 2017837 SPD_0929 SPD_0930     FALSE 0.039 445.000 0.000 NA   0.103
 2017837 2017838 SPD_0930 SPD_0931     TRUE 0.921 0.000 0.000 1.000   -0.360
 2017838 2017839 SPD_0931 SPD_0932     TRUE 0.749 28.000 0.000 NA   0.360
 2017839 2017840 SPD_0932 SPD_0933     TRUE 0.888 -72.000 0.000 NA   0.479
 2017840 2017841 SPD_0933 SPD_0934     FALSE 0.031 832.000 0.000 NA   0.044
 2017841 2017842 SPD_0934 SPD_0935     TRUE 0.801 10.000 0.000 NA   0.753
 2017842 2017843 SPD_0935 SPD_0936     TRUE 0.745 23.000 0.000 NA   0.841
 2017843 1619608 SPD_0936 SPD_0937     FALSE 0.178 91.000 0.000 NA   0.251
 1619608 2017844 SPD_0937 SPD_0938     FALSE 0.154 93.000 0.000 NA   0.020
 2017846 2017847 SPD_0940 SPD_0941     TRUE 0.859 2.000 0.000 NA   NA
 2017847 2017848 SPD_0941 SPD_0942     TRUE 0.722 10.000 0.000 NA   NA
 2017848 2017849 SPD_0942 SPD_0943     TRUE 0.695 23.000 0.000 NA   -0.441
 2017849 2017850 SPD_0943 SPD_0944     TRUE 0.893 29.000 0.000 0.003   0.020
 2017850 2017851 SPD_0944 SPD_0945     TRUE 0.867 8.000 0.000 1.000   0.231
 2017851 2017852 SPD_0945 SPD_0946     TRUE 0.924 2.000 0.000 1.000 N 0.686
 2017852 2017853 SPD_0946 SPD_0947     TRUE 0.817 5.000 0.000 NA   -0.442
 2017853 2017854 SPD_0947 SPD_0948     TRUE 0.807 15.000 0.000 NA   0.256
 2017854 2017855 SPD_0948 SPD_0949     TRUE 0.363 64.000 0.000 1.000   NA
 2017855 2017856 SPD_0949 SPD_0950     FALSE 0.033 383.000 0.000 1.000   NA
 2017856 2017857 SPD_0950 SPD_0951     FALSE 0.043 659.000 0.000 1.000   0.420
 2017857 2017858 SPD_0951 SPD_0952     FALSE 0.025 902.000 0.000 1.000   NA
 2017858 2017859 SPD_0952 SPD_0953   ppc TRUE 0.887 20.000 0.028 1.000 N NA
 2017859 2017860 SPD_0953 SPD_0954 ppc   FALSE 0.039 383.000 0.000 NA   0.802
 2017860 2017861 SPD_0954 SPD_0955     TRUE 0.816 69.000 0.368 NA   -0.057
 2017861 2017862 SPD_0955 SPD_0956     TRUE 0.996 -3.000 0.895 1.000   0.703
 2017862 2017863 SPD_0956 SPD_0957   dnaG TRUE 0.250 90.000 0.002 1.000   0.866
 2017863 2017864 SPD_0957 SPD_0958 dnaG rpoD TRUE 0.979 3.000 0.209 1.000 N 0.963
 2017864 2017865 SPD_0958 SPD_0959 rpoD   TRUE 0.899 14.000 0.044 NA   -0.373
 2017865 2017866 SPD_0959 SPD_0960   cpoA TRUE 0.826 34.000 0.019 NA   -0.041
 2017866 2017867 SPD_0960 SPD_0961 cpoA   TRUE 0.995 16.000 0.413 0.014 Y 0.154
 2017867 2017868 SPD_0961 SPD_0962     TRUE 0.855 31.000 0.016 NA N 0.357
 2017868 2017869 SPD_0962 SPD_0963     TRUE 0.830 59.000 0.167 NA   0.339
 2017869 2017870 SPD_0963 SPD_0964     TRUE 0.568 64.000 0.011 NA   0.827
 2017870 2017871 SPD_0964 SPD_0965     TRUE 0.879 10.000 0.009 NA   0.818
 2017872 2017873 SPD_0967 SPD_0968 murA-1   TRUE 0.930 16.000 0.052 1.000 N 0.797
 2017873 2017874 SPD_0968 SPD_0969     TRUE 0.991 -7.000 0.342 1.000 N -0.046
 2017874 2017875 SPD_0969 SPD_0970   map TRUE 0.964 16.000 0.235 1.000 N -0.171
 2017875 2017876 SPD_0970 SPD_0971 map   FALSE 0.027 381.000 0.000 NA   NA
 2017876 2017877 SPD_0971 SPD_0972     TRUE 0.978 15.000 0.750 NA   NA
 2017877 2017878 SPD_0972 SPD_0973   pcrA TRUE 0.268 191.000 0.000 0.052 Y NA
 2017878 2017879 SPD_0973 SPD_0975 pcrA   TRUE 0.938 43.000 0.005 0.016 Y NA
 2017880 2017881 SPD_0974 SPD_0976     TRUE 0.985 18.000 0.714 1.000   0.336
 2017881 2017882 SPD_0976 SPD_0977     TRUE 0.537 83.000 0.143 NA   0.831
 2017882 2017883 SPD_0977 SPD_0978     TRUE 0.963 -28.000 0.056 NA   0.574
 2017883 2017884 SPD_0978 SPD_0979     TRUE 0.969 5.000 0.166 NA   0.035
 2017884 2017885 SPD_0979 SPD_0980   prs2 TRUE 0.977 10.000 0.089 1.000 Y 0.804
 2017885 2017886 SPD_0980 SPD_0981 prs2   TRUE 0.375 113.000 0.145 1.000   -0.153
 2017887 2017888 SPD_0982 SPD_0983     TRUE 0.992 -16.000 0.725 1.000   NA
 2017888 2017889 SPD_0983 SPD_0984     TRUE 0.983 -3.000 0.150 1.000 N NA
 2017889 2017890 SPD_0984 SPD_0985   pta TRUE 0.830 44.000 0.067 1.000 N NA
 1619657 2017891 SPD_0986 SPD_0987     FALSE 0.067 182.000 0.000 NA   0.762
 2017892 2017893 SPD_0988 SPD_0989   rplU FALSE 0.070 182.000 0.000 NA   0.605
 2017893 2017894 SPD_0989 SPD_0990 rplU   TRUE 0.984 16.000 0.208 NA Y 0.474
 2017894 2017895 SPD_0990 SPD_0991   rpmA TRUE 0.982 17.000 0.203 NA Y -0.199
 2017896 2017897 SPD_0992 SPD_0993     TRUE 0.901 -28.000 0.000 NA   0.422
 2017900 2017901 SPD_0996 SPD_0997   hup TRUE 0.282 106.000 0.098 NA   NA
 2017901 2017902 SPD_0997 SPD_0998 hup   FALSE 0.050 426.000 0.000 1.000   0.409
 2017902 2017903 SPD_0998 SPD_0999     TRUE 0.954 3.000 0.019 1.000   0.385
 2017903 2017904 SPD_0999 SPD_1000     TRUE 0.762 80.000 0.600 NA   0.917
 2017904 2017905 SPD_1000 SPD_1001   ligA FALSE 0.214 93.000 0.002 NA   0.719
 2017905 2017906 SPD_1001 SPD_1002 ligA pulA FALSE 0.182 112.000 0.002 1.000 N 0.671
 2017908 2017909 SPD_1004 SPD_1005 gapN glgB FALSE 0.031 465.000 0.000 1.000 N NA
 2017909 2017910 SPD_1005 SPD_1006 glgB glgC TRUE 0.998 -10.000 0.317 0.002 Y NA
 2017910 2017911 SPD_1006 SPD_1007 glgC glgD TRUE 0.999 -10.000 0.810 0.001 Y 0.763
 2017911 2017912 SPD_1007 SPD_1008 glgD glgA TRUE 0.997 -3.000 0.395 1.000 Y 0.524
 2017912 1619680 SPD_1008 SPD_1009 glgA serB TRUE 0.478 59.000 0.000 NA   0.549
 1619680 2017913 SPD_1009 SPD_1011 serB   TRUE 0.834 9.000 0.000 NA   0.181
 2017916 2017917 SPD_1013 SPD_1014     FALSE 0.041 397.000 0.000 NA   0.593
 2017918 2017919 SPD_1015 SPD_1016 rexB rexA TRUE 0.994 -3.000 0.070 0.051 Y NA
 2017919 2017920 SPD_1016 SPD_1017 rexA   FALSE 0.117 170.000 0.010 NA   -0.133
 2017920 2017921 SPD_1017 SPD_1018   iga FALSE 0.061 209.000 0.000 NA   0.043
 2017921 2017922 SPD_1018 SPD_1019 iga   FALSE 0.049 459.000 0.000 1.000   0.390
 2017922 2017923 SPD_1019 SPD_1020   rnhB TRUE 0.984 -13.000 0.148 1.000   0.310
 2017923 2017924 SPD_1020 SPD_1021 rnhB   TRUE 0.869 16.000 0.002 1.000 N -0.089
 2017927 2017928 SPD_1024 SPD_1025   lpdA TRUE 0.812 64.000 0.200 1.000 N 0.913
 2017928 2017929 SPD_1025 SPD_1026 lpdA   TRUE 0.909 64.000 0.227 1.000 Y NA
 2017929 2017930 SPD_1026 SPD_1027     TRUE 0.476 218.000 0.103 0.050 Y NA
 2017930 2017931 SPD_1027 SPD_1028   acoA TRUE 0.997 16.000 0.769 0.001 Y 0.787
 2017931 2017932 SPD_1028 SPD_1029 acoA   FALSE 0.090 154.000 0.000 1.000 N 0.797
 2017932 2017933 SPD_1029 SPD_1030   pyrC FALSE 0.046 285.000 0.000 1.000 N -0.418
 2017933 2017934 SPD_1030 SPD_1031 pyrC mutX TRUE 0.887 13.000 0.005 1.000 N 0.698
 2017934 2017935 SPD_1031 SPD_1032 mutX ung TRUE 0.972 10.000 0.043 1.000 Y 0.709
 2017935 2017936 SPD_1032 SPD_1033 ung   FALSE 0.076 136.000 0.000 NA   0.890
 2017936 2017937 SPD_1033 SPD_1034     TRUE 0.774 14.000 0.000 NA   0.865
 2017937 2017938 SPD_1034 SPD_1035     FALSE 0.041 458.000 0.000 1.000   0.873
 2017938 2017939 SPD_1035 SPD_1036     TRUE 0.558 70.000 0.000 0.032   0.797
 2017939 2017940 SPD_1036 SPD_1037     FALSE 0.038 422.000 0.000 NA   0.770
 2017940 2017941 SPD_1037 SPD_1038   phpA FALSE 0.063 158.000 0.000 NA   0.964
 2017941 2017942 SPD_1038 SPD_1039 phpA ptsI FALSE 0.054 255.000 0.000 NA   0.622
 2017942 2017943 SPD_1039 SPD_1040 ptsI ptsH TRUE 0.994 6.000 0.240 0.020 Y 0.852
 2017944 2017945 SPD_1041 SPD_1042 nrdH nrdE TRUE 0.792 81.000 0.562 1.000 N 0.460
 2017945 2017946 SPD_1042 SPD_1043 nrdE nrdF TRUE 0.814 188.000 0.500 0.002 Y 0.320
 2017946 2017947 SPD_1043 SPD_1044 nrdF lacR2 FALSE 0.208 182.000 0.056 1.000 N 0.706
 2017948 2017949 SPD_1045 SPD_1046   lacG-2 TRUE 0.525 43.000 0.000 NA   NA
 2017949 2017950 SPD_1046 SPD_1047 lacG-2 lacE-2 TRUE 0.452 209.000 0.200 1.000 Y NA
 2017950 2017951 SPD_1047 SPD_1048 lacE-2 lacF-2 TRUE 0.999 0.000 0.600 0.020 Y 0.266
 2017951 2017952 SPD_1048 SPD_1049 lacF-2 lacT TRUE 0.963 36.000 0.500 1.000   0.665
 2017952 2017953 SPD_1049 SPD_1050 lacT lacD FALSE 0.072 234.000 0.000 1.000   0.308
 2017953 2017954 SPD_1050 SPD_1051 lacD lacC TRUE 0.999 2.000 0.800 0.001 Y 0.639
 2017954 2017955 SPD_1051 SPD_1052 lacC lacB TRUE 0.990 11.000 0.500 1.000 Y 0.979
 2017955 2017956 SPD_1052 SPD_1053 lacB lacA TRUE 0.992 31.000 0.333 0.001 Y 0.166
 2017956 2017957 SPD_1053 SPD_1054 lacA   FALSE 0.084 158.000 0.000 1.000   -0.043
 2017957 1619726 SPD_1054 SPD_1055     FALSE 0.076 169.000 0.000 NA   0.169
 1619726 1619727 SPD_1055 SPD_1056     TRUE 0.902 -15.000 0.000 NA   0.866
 1619727 2017958 SPD_1056 SPD_1057     TRUE 0.762 8.000 0.000 NA   NA
 2017958 1619729 SPD_1057 SPD_1058     TRUE 0.568 38.000 0.000 NA   NA
 2017960 2017961 SPD_1060 SPD_1061 lepA   TRUE 0.338 79.000 0.002 1.000   0.534
 2017961 2017962 SPD_1061 SPD_1062   recN TRUE 0.950 2.000 0.005 1.000   0.091
 2017962 2017963 SPD_1062 SPD_1063 recN   TRUE 0.936 7.000 0.037 1.000 N -0.262
 2017963 2017964 SPD_1063 SPD_1064     TRUE 0.971 -7.000 0.048 1.000 N NA
 2017964 2017965 SPD_1064 SPD_1065   ispA TRUE 0.973 -7.000 0.058 1.000 N NA
 2017965 2017966 SPD_1065 SPD_1066 ispA xseB TRUE 0.979 -3.000 0.100 1.000 N NA
 2017966 2017967 SPD_1066 SPD_1067 xseB xseA TRUE 0.997 -22.000 0.412 0.001 Y NA
 2017967 2017968 SPD_1067 SPD_1068 xseA udk FALSE 0.163 128.000 0.002 1.000 N 0.424
 2017968 2017969 SPD_1068 SPD_1069 udk   FALSE 0.090 108.000 0.000 NA   -0.392
 2017969 2017970 SPD_1069 SPD_1070   truB FALSE 0.054 241.000 0.000 NA   0.786
 2017970 2017971 SPD_1070 SPD_1071 truB   FALSE 0.131 101.000 0.000 NA   0.611
 2017971 2017972 SPD_1071 SPD_1072     TRUE 0.889 12.000 0.033 NA   -0.491
 2017972 2017973 SPD_1072 SPD_1073     TRUE 0.256 96.000 0.027 NA   0.979
 2017973 2017974 SPD_1073 SPD_1074     TRUE 0.914 22.000 0.000 0.001   -0.168
 2017974 2017975 SPD_1074 SPD_1075     FALSE 0.092 148.000 0.000 1.000   0.673
 2017975 2017976 SPD_1075 SPD_1076   srtA FALSE 0.054 244.000 0.000 NA N 0.831
 2017976 2017977 SPD_1076 SPD_1077 srtA gyrA TRUE 0.961 0.000 0.013 NA N 0.797
 2017979 2017980 SPD_1079 SPD_1080     TRUE 0.684 165.000 0.542 0.002   0.318
 2017980 2017981 SPD_1080 SPD_1081     TRUE 0.255 75.000 0.000 NA   -0.175
 2017981 2017982 SPD_1081 SPD_1082     TRUE 0.989 2.000 0.400 NA   0.751
 2017982 2017983 SPD_1082 SPD_1083   vicX TRUE 0.698 31.000 0.000 NA   0.842
 2017983 2017984 SPD_1083 SPD_1084 vicX   TRUE 0.966 2.000 0.038 1.000   0.785
 2017984 2017985 SPD_1084 SPD_1085     TRUE 0.998 -7.000 0.597 0.012 Y NA
 2017985 2017986 SPD_1085 SPD_1086   mutY TRUE 0.587 55.000 0.002 1.000 N NA
 2017986 2017987 SPD_1086 SPD_1087 mutY fhs FALSE 0.037 329.000 0.000 1.000 N NA
 2017988 2017989 SPD_1088 SPD_1089 coaB coaC TRUE 0.890 12.000 0.013 1.000   0.962
 2017989 2017990 SPD_1089 SPD_1090 coaC   TRUE 0.949 -16.000 0.019 NA   0.980
 2017990 2017991 SPD_1090 SPD_1091     FALSE 0.106 282.000 0.026 NA   -0.020
 2017991 2017992 SPD_1091 SPD_1093     TRUE 0.936 12.000 0.107 NA   -0.204
 2017993 2017994 SPD_1092 SPD_1094     TRUE 0.441 74.000 0.021 1.000   -0.699
 2017994 2017995 SPD_1094 SPD_1095     TRUE 0.976 -34.000 0.014 0.013   0.501
 2017995 2017996 SPD_1095 SPD_1096   uvrB TRUE 0.887 10.000 0.002 1.000 N 0.336
 2017996 2017997 SPD_1096 SPD_1097 uvrB   TRUE 0.287 77.000 0.002 NA   -0.362
 2017998 2017999 SPD_1098 SPD_1099     TRUE 0.996 0.000 0.326 1.000 Y 0.917
 2017999 2018000 SPD_1099 SPD_1100   zwf FALSE 0.184 149.000 0.021 1.000 N 0.704
 2018001 2018002 SPD_1101 SPD_1102 ftsY   TRUE 0.947 4.000 0.005 0.081   NA
 2018002 2018003 SPD_1102 SPD_1103     TRUE 0.991 0.000 0.103 0.020   0.206
 2018003 2018004 SPD_1103 SPD_1104   smc TRUE 0.966 -3.000 0.006 1.000   0.219
 2018004 2018005 SPD_1104 SPD_1105 smc rnc TRUE 0.979 -9.000 0.120 1.000 N -0.860
 2018005 1619777 SPD_1105 SPD_1106 rnc   FALSE 0.072 183.000 0.000 NA   0.482
 1619777 2018006 SPD_1106 SPD_1107   guaC TRUE 0.441 64.000 0.000 NA   0.425
 2018006 2018007 SPD_1107 SPD_1108 guaC   FALSE 0.078 175.000 0.000 NA N 0.179
 2018007 2018008 SPD_1108 SPD_1109     TRUE 0.996 -13.000 0.467 NA Y 0.274
 2018008 2018009 SPD_1109 SPD_1110     FALSE 0.056 164.000 0.000 NA   -0.390
 2018009 2018010 SPD_1110 SPD_1111     TRUE 0.909 -10.000 0.000 NA   -0.195
 2018010 2018011 SPD_1111 SPD_1112     FALSE 0.124 100.000 0.000 NA   0.819
 2018011 2018012 SPD_1112 SPD_1113     FALSE 0.048 219.000 0.000 NA   -0.274
 2018014 1619787 SPD_1115 SPD_1116 leuB leuA TRUE 0.802 12.000 0.000 NA   0.103
 1619787 2018015 SPD_1116 SPD_1117 leuA   TRUE 0.764 19.000 0.000 NA   -0.225
 2018015 2018016 SPD_1117 SPD_1118   cutC TRUE 0.827 44.000 0.040 NA   0.320
 2018016 2018017 SPD_1118 SPD_1119 cutC   TRUE 0.282 93.000 0.015 NA   0.620
 2018017 2018018 SPD_1119 SPD_1120   topA FALSE 0.101 106.000 0.000 NA   -0.229
 2018018 2018019 SPD_1120 SPD_1121 topA   FALSE 0.055 167.000 0.000 NA   -0.406
 2018019 2018020 SPD_1121 SPD_1122     FALSE 0.034 890.000 0.000 NA   0.293
 2018020 2018021 SPD_1122 SPD_1123   licC FALSE 0.232 96.000 0.002 1.000 N 0.650
 2018021 2018022 SPD_1123 SPD_1124 licC licB TRUE 0.950 12.000 0.133 1.000   -0.096
 2018022 2018023 SPD_1124 SPD_1125 licB pck TRUE 0.992 -10.000 0.667 NA   NA
 2018023 2018024 SPD_1125 SPD_1126 pck   TRUE 0.915 17.000 0.074 NA N NA
 2018024 2018025 SPD_1126 SPD_1127   ispD TRUE 0.984 5.000 0.367 1.000 N 0.620
 2018026 2018027 SPD_1128 SPD_1129   licD1 TRUE 0.978 10.000 0.500 NA   0.175
 2018027 2018028 SPD_1129 SPD_1130 licD1 licD2 TRUE 0.997 2.000 1.000 NA Y -0.656
 2018029 2018030 SPD_1131 SPD_1132 carB carA TRUE 0.555 313.000 0.117 0.001 Y 0.576
 2018030 2018031 SPD_1132 SPD_1133 carA pyrB TRUE 0.900 50.000 0.014 1.000 Y -0.084
 2018031 2018032 SPD_1133 SPD_1134 pyrB pyrR TRUE 0.985 19.000 0.247 1.000 Y -0.045
 2018032 2018033 SPD_1134 SPD_1135 pyrR nth FALSE 0.071 211.000 0.000 1.000 N -0.046
 2018033 2018034 SPD_1135 SPD_1136 nth   TRUE 0.934 0.000 0.002 NA   -0.406
 2018036 2018037 SPD_1138 SPD_1139 htpX lemA TRUE 0.983 2.000 0.222 NA   0.065
 2018038 2018039 SPD_1140 SPD_1141 gidB uraA FALSE 0.051 352.000 0.000 1.000 N -0.007
 2018040 2018041 SPD_1142 SPD_1143 ffh   TRUE 0.955 12.000 0.151 1.000   -0.003
 2018041 2018042 SPD_1143 SPD_1144     TRUE 0.287 91.000 0.009 NA   0.339
 2018043 2018044 SPD_1145 SPD_1146     TRUE 0.924 13.000 0.035 1.000   0.401
 1619818 2018045 SPD_1147 SPD_1148   rplS TRUE 0.544 42.000 0.000 NA   NA
 2018045 2018046 SPD_1148 SPD_1149 rplS crcB1 FALSE 0.160 119.000 0.004 1.000 N 0.942
 2018046 2018047 SPD_1149 SPD_1150 crcB1 crcB2 TRUE 0.996 -6.000 0.160 0.080 Y -0.060
 2018047 2018048 SPD_1150 SPD_1151 crcB2   TRUE 0.970 -3.000 0.023 1.000 N -0.273
 2018048 2018049 SPD_1151 SPD_1152   fld TRUE 0.401 116.000 0.167 1.000 N 0.816
 2018050 2018051 SPD_1153 SPD_1154   rpmE TRUE 0.244 96.000 0.020 1.000   -0.584
 2018052 2018053 SPD_1155 SPD_1156     TRUE 0.952 -25.000 0.029 NA   0.808
 2018053 2018054 SPD_1156 SPD_1157     TRUE 0.518 52.000 0.000 NA   -0.205
 2018056 2018057 SPD_1159 SPD_1160     TRUE 0.805 13.000 0.000 NA   0.469
 2018059 2018060 SPD_1162 SPD_1163     TRUE 0.780 18.000 0.000 NA   0.892
 2018060 2018061 SPD_1163 SPD_1164   cdd-2 FALSE 0.071 218.000 0.000 1.000 N 0.763
 2018061 2018062 SPD_1164 SPD_1165 cdd-2   FALSE 0.065 288.000 0.000 1.000 N 0.349
 2018062 2018063 SPD_1165 SPD_1166     TRUE 0.869 5.000 0.000 NA   0.202
 2018063 2018064 SPD_1166 SPD_1167     TRUE 0.816 10.000 0.000 NA   0.218
 2018064 2018065 SPD_1167 SPD_1168     TRUE 0.888 13.000 0.000 0.080   0.880
 2018065 2018066 SPD_1168 SPD_1169     TRUE 0.986 17.000 0.091 0.045 Y 0.629
 2018066 2018067 SPD_1169 SPD_1170     TRUE 0.696 110.000 0.091 0.045 Y 0.530
 2018067 2018068 SPD_1170 SPD_1171     FALSE 0.199 82.000 0.000 NA   0.827
 2018068 2018069 SPD_1171 SPD_1172   nanE-2 TRUE 0.692 24.000 0.000 NA   -0.426
 2018069 1619844 SPD_1172 SPD_1173 nanE-2   TRUE 0.622 47.000 0.000 NA   0.250
 1619844 2018070 SPD_1173 SPD_1174     FALSE 0.022 583.000 0.000 NA   NA
 2018070 2018071 SPD_1174 SPD_1175     FALSE 0.019 1064.000 0.000 NA   NA
 2018071 2018072 SPD_1175 SPD_1176     TRUE 0.887 3.000 0.000 1.000   0.953
 2018072 2018073 SPD_1176 SPD_1177     TRUE 0.941 15.000 0.000 1.000 Y 0.157
 2018073 2018074 SPD_1177 SPD_1178     TRUE 0.931 -3.000 0.000 1.000 N -0.353
 2018074 2018075 SPD_1178 SPD_1179     TRUE 0.936 33.000 0.182 1.000   0.323
 2018075 2018076 SPD_1179 SPD_1180     FALSE 0.030 518.000 0.000 NA   0.948
 2018076 2018077 SPD_1180 SPD_1181     FALSE 0.166 93.000 0.000 NA   0.472
 2018077 2018078 SPD_1181 SPD_1182     TRUE 0.801 13.000 0.000 NA   0.519
 2018078 2018079 SPD_1182 SPD_1183     TRUE 0.535 55.000 0.000 NA   0.518
 2018079 2018080 SPD_1183 SPD_1184     TRUE 0.833 8.000 0.000 NA   0.742
 2018080 2018081 SPD_1184 SPD_1185     TRUE 0.929 -3.000 0.000 NA   0.784
 2018083 2018084 SPD_1187 SPD_1188 rplL rplJ TRUE 0.969 76.000 0.884 0.024 Y 0.637
 2018086 2018087 SPD_1190 SPD_1191     FALSE 0.060 302.000 0.000 1.000 N 0.510
 2018087 2018088 SPD_1191 SPD_1192     TRUE 0.999 2.000 0.895 0.008 Y 0.648
 2018088 2018089 SPD_1192 SPD_1193   msrAB1 TRUE 0.747 58.000 0.035 1.000 N 0.679
 2018089 2018090 SPD_1193 SPD_1194 msrAB1 thrB FALSE 0.040 296.000 0.000 1.000 N NA
 2018090 2018091 SPD_1194 SPD_1195 thrB hom TRUE 0.984 2.000 0.036 1.000 Y NA
 2018091 2018092 SPD_1195 SPD_1196 hom mecA FALSE 0.155 151.000 0.044 NA N NA
 2018092 2018093 SPD_1196 SPD_1197 mecA   FALSE 0.053 142.000 0.000 NA   NA
 2018093 2018094 SPD_1197 SPD_1198     TRUE 0.943 29.000 0.333 NA   NA
 2018094 2018095 SPD_1198 SPD_1199     TRUE 0.950 16.000 0.222 NA   NA
 2018095 2018096 SPD_1199 SPD_1200     TRUE 0.993 2.000 0.250 1.000 Y NA
 2018096 2018097 SPD_1200 SPD_1201   licD3 TRUE 0.998 -7.000 0.667 NA Y 0.425
 2018097 2018098 SPD_1201 SPD_1202 licD3 psr FALSE 0.053 279.000 0.000 NA N 0.591
 2018098 2018099 SPD_1202 SPD_1203 psr   TRUE 0.973 -3.000 0.025 NA N 0.234
 2018099 2018100 SPD_1203 SPD_1204   aroK TRUE 0.991 -3.000 0.025 1.000 Y 0.426
 2018100 2018101 SPD_1204 SPD_1205 aroK aroA TRUE 0.989 -7.000 0.012 1.000 Y 0.390
 2018101 2018102 SPD_1205 SPD_1206 aroA   FALSE 0.212 92.000 0.003 NA   0.900
 2018102 2018103 SPD_1206 SPD_1207   tyrA TRUE 0.920 11.000 0.058 NA   -0.099
 2018103 2018104 SPD_1207 SPD_1208 tyrA aroC TRUE 0.965 10.000 0.010 1.000 Y 0.386
 2018104 2018105 SPD_1208 SPD_1209 aroC aroB TRUE 0.990 10.000 0.110 0.003 Y 0.076
 2018105 2018106 SPD_1209 SPD_1210 aroB aroE TRUE 0.962 19.000 0.010 1.000 Y 0.414
 2018106 2018107 SPD_1210 SPD_1211 aroE aroD TRUE 0.997 -10.000 0.500 1.000 Y 0.611
 2018107 2018108 SPD_1211 SPD_1212 aroD   TRUE 0.980 -3.000 0.125 NA   -0.406
 2018108 2018109 SPD_1212 SPD_1213     FALSE 0.035 678.000 0.000 NA   0.478
 2018109 2018110 SPD_1213 SPD_1214     TRUE 0.983 -19.000 0.341 NA   NA
 2018112 2018113 SPD_1216 SPD_1217 alaS   TRUE 0.857 22.000 0.006 NA   0.536
 2018113 2018114 SPD_1217 SPD_1218   potD FALSE 0.023 775.000 0.000 NA   -0.457
 2018114 2018115 SPD_1218 SPD_1219 potD potC TRUE 0.997 -3.000 0.253 0.045 Y 0.769
 2018115 2018116 SPD_1219 SPD_1220 potC potH TRUE 0.998 -3.000 0.492 0.045 Y -0.017
 2018116 2018117 SPD_1220 SPD_1221 potH potA TRUE 0.999 -19.000 0.928 0.045 Y 0.166
 2018117 2018118 SPD_1221 SPD_1222 potA murB TRUE 0.740 59.000 0.041 1.000 N 0.652
 2018118 2018119 SPD_1222 SPD_1223 murB   FALSE 0.154 112.000 0.005 NA   -0.181
 2018119 2018120 SPD_1223 SPD_1224   budA TRUE 0.919 10.000 0.042 NA   0.653
 2018122 2018123 SPD_1226 SPD_1227     FALSE 0.084 157.000 0.000 NA N 0.197
 2018123 2018124 SPD_1227 SPD_1228     TRUE 0.989 12.000 0.413 NA Y -0.047
 2018124 2018125 SPD_1228 SPD_1229     TRUE 0.996 13.000 0.542 0.002 Y 0.040
 2018125 2018126 SPD_1229 SPD_1230     TRUE 0.995 11.000 0.490 0.005 Y -0.076
 2018126 2018127 SPD_1230 SPD_1231     TRUE 0.999 -10.000 0.907 0.005 Y 0.347
 2018127 2018128 SPD_1231 SPD_1232     TRUE 0.994 0.000 0.206 1.000 Y -0.492
 2018128 2018129 SPD_1232 SPD_1233     FALSE 0.193 574.000 0.303 NA N -0.372
 2018129 2018130 SPD_1233 SPD_1234     TRUE 0.986 1.000 0.229 NA N 0.756
 2018130 2018131 SPD_1234 SPD_1235     TRUE 0.989 -10.000 0.337 NA   0.859
 2018131 2018132 SPD_1235 SPD_1236   spx TRUE 0.985 0.000 0.169 NA   0.184
 2018132 2018133 SPD_1236 SPD_1237 spx   FALSE 0.060 210.000 0.000 NA   0.764
 2018133 2018134 SPD_1237 SPD_1238     TRUE 0.989 -10.000 0.330 NA   -0.112
 2018134 2018135 SPD_1238 SPD_1239     TRUE 0.914 11.000 0.055 1.000 N NA
 2018135 2018136 SPD_1239 SPD_1240     TRUE 0.946 5.000 0.060 1.000 N NA
 2018136 2018137 SPD_1240 SPD_1241     TRUE 0.351 84.000 0.021 NA   0.767
 2018137 2018138 SPD_1241 SPD_1242     TRUE 0.954 16.000 0.206 NA   0.956
 2018138 2018139 SPD_1242 SPD_1243   lgt TRUE 0.972 1.000 0.079 NA   0.939
 2018139 2018140 SPD_1243 SPD_1244 lgt hprK TRUE 0.993 -7.000 0.494 1.000 N 0.805
 2018140 2018141 SPD_1244 SPD_1245 hprK rpsU FALSE 0.169 130.000 0.011 1.000   0.821
 2018141 2018142 SPD_1245 SPD_1246 rpsU nagB FALSE 0.169 140.000 0.011 1.000   0.129
 2018144 2018145 SPD_1248 SPD_1249     FALSE 0.030 1454.000 0.000 NA   0.084
 2018145 2018146 SPD_1249 SPD_1250   nadE FALSE 0.115 247.000 0.007 1.000 N 0.240
 2018146 2018147 SPD_1250 SPD_1251 nadE pncB TRUE 0.998 -3.000 0.194 0.003 Y 0.192
 2018147 2018148 SPD_1251 SPD_1252 pncB   FALSE 0.204 116.000 0.021 NA   -0.010
 2018148 2018149 SPD_1252 SPD_1253     TRUE 0.972 -10.000 0.103 NA   NA
 2018149 2018150 SPD_1253 SPD_1254     FALSE 0.026 385.000 0.000 NA   NA
 2018150 2018151 SPD_1254 SPD_1255     TRUE 0.944 16.000 0.154 NA   -0.352
 2018151 2018152 SPD_1255 SPD_1256     FALSE 0.043 505.000 0.000 1.000   0.071
 1619930 2018155 SPD_1259 SPD_1260     TRUE 0.932 -3.000 0.000 NA   0.072
 2018155 2018156 SPD_1260 SPD_1261     FALSE 0.057 259.000 0.000 NA   0.390
 2018158 2018159 SPD_1263 SPD_1264     TRUE 0.997 -16.000 0.294 0.008 Y 0.874
 2018159 2018160 SPD_1264 SPD_1265     TRUE 0.788 11.000 0.000 NA   0.806
 2018160 2018161 SPD_1265 SPD_1266     TRUE 0.996 0.000 1.000 NA   -0.241
 2018161 2018162 SPD_1266 SPD_1267     TRUE 0.990 -12.000 0.357 1.000   0.673
 2018163 2018164 SPD_1268 SPD_1269     TRUE 0.274 73.000 0.000 NA   0.893
 2018164 2018165 SPD_1269 SPD_1270     TRUE 0.810 9.000 0.000 NA   0.868
 2018165 2018166 SPD_1270 SPD_1271     TRUE 0.922 -13.000 0.000 NA   0.401
 2018166 2018167 SPD_1271 SPD_1272     FALSE 0.076 170.000 0.000 NA   0.464
 2018167 2018168 SPD_1272 SPD_1273     TRUE 0.898 -19.000 0.000 NA   -0.034
 2018168 2018169 SPD_1273 SPD_1274   guaA FALSE 0.051 250.000 0.000 NA   0.798
 2018171 2018172 SPD_1276 SPD_1277     TRUE 0.933 9.000 0.047 1.000   0.912
 2018172 2018173 SPD_1277 SPD_1278   cppA TRUE 0.990 -3.000 0.326 NA   0.914
 2018173 2018174 SPD_1278 SPD_1279 cppA   FALSE 0.152 84.000 0.000 NA   -0.417
 2018174 2018175 SPD_1279 SPD_1280     TRUE 0.978 2.000 0.143 1.000   0.969
 2018175 2018176 SPD_1280 SPD_1281     TRUE 0.781 22.000 0.000 NA   0.190
 2018176 2018177 SPD_1281 SPD_1282     TRUE 0.958 1.000 0.013 NA   0.593
 2018177 2018178 SPD_1282 SPD_1283     FALSE 0.145 94.000 0.000 NA   0.796
 2018179 2018180 SPD_1284 SPD_1285   def FALSE 0.045 324.000 0.000 NA   0.586
 2018180 2018181 SPD_1285 SPD_1286 def   TRUE 0.886 45.000 0.002 1.000 Y -0.066
 2018182 2018183 SPD_1287 SPD_1288 trxB   TRUE 0.739 66.000 0.117 NA   0.454
 2018183 2018184 SPD_1288 SPD_1289     TRUE 0.730 78.000 0.364 NA   0.647
 2018184 2018185 SPD_1289 SPD_1290     TRUE 0.996 0.000 0.310 1.000 Y 0.432
 2018185 2018186 SPD_1290 SPD_1291     FALSE 0.143 158.000 0.010 1.000 N 0.901
 2018186 2018187 SPD_1291 SPD_1292   ogt TRUE 0.975 -6.000 0.050 1.000 N -0.306
 2018187 2018188 SPD_1292 SPD_1293 ogt   TRUE 0.970 0.000 0.019 1.000   0.504
 2018189 2018190 SPD_1294 SPD_1295     TRUE 0.985 -3.000 0.146 1.000   0.934
 2018191 2018192 SPD_1296 SPD_1297     TRUE 0.997 1.000 0.488 NA Y 0.313
 2018192 2018193 SPD_1297 SPD_1298   nox FALSE 0.142 152.000 0.005 1.000   0.126
 2018194 2018195 SPD_1299 SPD_1300     TRUE 0.932 -3.000 0.000 NA   0.680
 2018195 2018196 SPD_1300 SPD_1301     TRUE 0.811 60.000 0.243 NA   NA
 2018196 2018197 SPD_1301 SPD_1302     TRUE 0.975 18.000 0.588 NA   NA
 2018198 2018199 SPD_1303 SPD_1304   glyS TRUE 0.755 42.000 0.020 NA   NA
 2018199 2018200 SPD_1304 SPD_1305 glyS glyQ TRUE 0.793 260.000 0.651 0.001 Y 0.815
 2018200 2018201 SPD_1305 SPD_1306 glyQ   FALSE 0.099 194.000 0.003 NA   0.702
 2018201 2018202 SPD_1306 SPD_1307     TRUE 0.909 -18.000 0.000 NA   0.146
 2018202 2018203 SPD_1307 SPD_1308     FALSE 0.040 273.000 0.000 1.000   NA
 2018203 2018204 SPD_1308 SPD_1309   pgdA FALSE 0.087 114.000 0.000 1.000   NA
 2018204 2018205 SPD_1309 SPD_1310 pgdA   FALSE 0.044 184.000 0.000 NA   NA
 2018206 2018207 SPD_1311 SPD_1312     TRUE 0.985 -3.000 0.200 1.000   NA
 1619984 1619985 SPD_1313 SPD_1314     TRUE 0.845 -24.000 0.000 NA   NA
 1619985 1619986 SPD_1314 SPD_1315     TRUE 0.930 0.000 0.000 NA   0.196
 1619986 2018208 SPD_1315 SPD_1316     TRUE 0.540 54.000 0.000 NA   0.656
 2018208 2018209 SPD_1316 SPD_1317     FALSE 0.098 123.000 0.000 NA   0.597
 2018209 2018210 SPD_1317 SPD_1318   tuf FALSE 0.039 384.000 0.000 NA   0.002
 2018210 2018211 SPD_1318 SPD_1319 tuf   FALSE 0.043 343.000 0.000 NA   0.059
 2018211 2018212 SPD_1319 SPD_1320     FALSE 0.042 457.000 0.000 NA   0.349
 2018212 2018213 SPD_1320 SPD_1321     FALSE 0.065 224.000 0.000 1.000   0.832
 2018213 2018214 SPD_1321 SPD_1322     TRUE 0.886 -42.000 0.000 NA   0.573
 2018214 2018215 SPD_1322 SPD_1323     FALSE 0.119 111.000 0.000 NA   0.191
 2018215 2018216 SPD_1323 SPD_1324     FALSE 0.030 358.000 0.000 NA   -0.468
 2018216 1619996 SPD_1324 SPD_1325     FALSE 0.055 220.000 0.000 NA   0.826
 2018217 2018218 SPD_1326 SPD_1327 pgm bta TRUE 0.273 111.000 0.049 NA   0.571
 2018219 2018220 SPD_1328 SPD_1329 aatB   TRUE 0.981 13.000 0.154 1.000 Y -0.088
 2018220 2018221 SPD_1329 SPD_1330     TRUE 0.981 10.000 0.130 1.000 Y 0.643
 2018221 2018222 SPD_1330 SPD_1331     FALSE 0.162 146.000 0.013 1.000   0.006
 2018222 2018223 SPD_1331 SPD_1332     TRUE 0.990 -10.000 0.324 NA   0.176
 2018225 2018226 SPD_1334 SPD_1335 atpC atpD TRUE 0.996 11.000 0.837 0.004 Y NA
 2018226 2018227 SPD_1335 SPD_1336 atpD atpG TRUE 0.930 86.000 0.724 0.004 Y NA
 2018227 2018228 SPD_1336 SPD_1337 atpG atpA TRUE 0.997 16.000 0.846 0.004 Y 0.475
 2018228 2018229 SPD_1337 SPD_1338 atpA atpH TRUE 0.997 15.000 0.864 0.004 Y 0.329
 2018229 2018230 SPD_1338 SPD_1339 atpH atpF TRUE 0.997 0.000 0.222 0.004 Y -0.227
 2018230 2018231 SPD_1339 SPD_1340 atpF atpB TRUE 0.984 14.000 0.032 0.004 Y 0.597
 2018231 2018232 SPD_1340 SPD_1341 atpB atpE TRUE 0.993 35.000 0.557 0.004 Y 0.732
 2018232 2018233 SPD_1341 SPD_1342 atpE   TRUE 0.292 75.000 0.000 1.000 N -0.272
 2018233 2018234 SPD_1342 SPD_1343     FALSE 0.045 445.000 0.000 1.000 N 0.822
 2018234 2018235 SPD_1343 SPD_1344     FALSE 0.144 88.000 0.000 NA   -0.322
 2018235 2018236 SPD_1344 SPD_1345   greA TRUE 0.663 28.000 0.000 NA   -0.424
 2018236 2018237 SPD_1345 SPD_1346 greA   TRUE 0.550 71.000 0.079 NA   NA
 2018237 2018238 SPD_1346 SPD_1347     TRUE 0.477 81.000 0.120 NA   NA
 2018238 2018239 SPD_1347 SPD_1348     TRUE 0.985 -3.000 0.037 0.012   NA
 2018239 2018240 SPD_1348 SPD_1349   murC TRUE 0.876 10.000 0.014 1.000   NA
 2018240 2018241 SPD_1349 SPD_1350 murC   TRUE 0.850 11.000 0.013 NA   NA
 2018241 2018242 SPD_1350 SPD_1351     TRUE 0.849 48.000 0.151 NA   NA
 2018242 2018243 SPD_1351 SPD_1352     FALSE 0.134 93.000 0.000 1.000 N NA
 2018243 2018244 SPD_1352 SPD_1353     TRUE 0.988 8.000 0.082 0.011 Y NA
 2018244 2018245 SPD_1353 SPD_1354     FALSE 0.063 158.000 0.000 NA   0.955
 2018245 2018246 SPD_1354 SPD_1355     FALSE 0.100 119.000 0.000 NA   0.698
 2018246 1620027 SPD_1355 SPD_1356     TRUE 0.757 25.000 0.000 NA   0.479
 1620027 2018247 SPD_1356 SPD_1357   aliB FALSE 0.065 172.000 0.000 NA   0.857
 2018247 2018248 SPD_1357 SPD_1358 aliB   FALSE 0.081 203.000 0.000 1.000   0.399
 2018250 1620032 SPD_1360 SPD_1361     FALSE 0.137 101.000 0.000 NA   0.453
 1620032 2018251 SPD_1361 SPD_1362     TRUE 0.915 -16.000 0.000 NA   0.310
 2018251 2018252 SPD_1362 SPD_1363   ppaC TRUE 0.271 87.000 0.005 NA   0.085
 2018252 2018253 SPD_1363 SPD_1364 ppaC   TRUE 0.500 71.000 0.005 1.000 N 0.267
 2018253 2018254 SPD_1364 SPD_1365     TRUE 0.986 -10.000 0.209 1.000   0.847
 2018254 2018255 SPD_1365 SPD_1366     TRUE 0.687 54.000 0.006 1.000   0.858
 2018255 2018256 SPD_1366 SPD_1367     TRUE 0.981 2.000 0.151 1.000   0.820
 2018256 2018257 SPD_1367 SPD_1368   rpsR FALSE 0.055 295.000 0.000 1.000   0.021
 2018257 2018258 SPD_1368 SPD_1369 rpsR ssb TRUE 0.850 32.000 0.012 1.000 N 0.670
 2018258 2018259 SPD_1369 SPD_1370 ssb rpsF TRUE 0.906 12.000 0.012 1.000 N 0.198
 2018259 2018260 SPD_1370 SPD_1371 rpsF asnS FALSE 0.231 153.000 0.000 1.000 Y -0.176
 2018260 2018261 SPD_1371 SPD_1372 asnS   TRUE 0.876 19.000 0.013 NA   0.889
 2018261 2018262 SPD_1372 SPD_1373   aspC TRUE 0.972 -7.000 0.042 NA   0.735
 2018262 2018263 SPD_1373 SPD_1374 aspC   TRUE 0.989 -3.000 0.205 1.000   0.429
 2018267 2018268 SPD_1378 SPD_1379     TRUE 0.332 79.000 0.004 NA   0.124
 2018268 2018269 SPD_1379 SPD_1380     FALSE 0.164 167.000 0.030 NA   0.617
 2018269 2018270 SPD_1380 SPD_1381   def-2 TRUE 0.897 12.000 0.028 NA   0.906
 2018270 2018271 SPD_1381 SPD_1382 def-2   FALSE 0.111 116.000 0.000 1.000 N 0.937
 2018271 2018272 SPD_1382 SPD_1383     TRUE 0.756 13.000 0.000 1.000 N -0.826
 2018274 2018275 SPD_1385 SPD_1386     TRUE 0.981 -3.000 0.056 1.000   0.348
 2018275 2018276 SPD_1386 SPD_1387   dapB TRUE 0.911 12.000 0.015 1.000 N 0.184
 2018276 2018277 SPD_1387 SPD_1388 dapB   FALSE 0.083 277.000 0.004 NA   0.271
 2018277 2018278 SPD_1388 SPD_1389     TRUE 0.974 2.000 0.139 NA   -0.346
 2018278 2018279 SPD_1389 SPD_1390     TRUE 0.420 74.000 0.003 1.000   0.740
 2018279 2018280 SPD_1390 SPD_1391     TRUE 0.938 24.000 0.150 NA   0.605
 2018280 2018281 SPD_1391 SPD_1392     TRUE 0.992 -13.000 0.502 NA   0.348
 2018283 2018284 SPD_1394 SPD_1395     TRUE 0.993 -3.000 0.470 NA   0.528
 2018284 2018285 SPD_1395 SPD_1396     TRUE 0.987 -3.000 0.214 NA   0.914
 2018285 2018286 SPD_1396 SPD_1397     TRUE 0.772 52.000 0.051 NA   0.904
 2018286 2018287 SPD_1397 SPD_1398     TRUE 0.858 11.000 0.002 NA   0.563
 2018287 2018288 SPD_1398 SPD_1399   clpX TRUE 0.939 9.000 0.043 1.000   0.174
 2018288 2018289 SPD_1399 SPD_1400 clpX   TRUE 0.816 32.000 0.012 NA   -0.068
 2018289 2018290 SPD_1400 SPD_1401   folA TRUE 0.966 0.000 0.030 NA   0.858
 2018290 2018291 SPD_1401 SPD_1402 folA   FALSE 0.161 130.000 0.005 1.000 N 0.020
 2018291 2018292 SPD_1402 SPD_1403   lytC FALSE 0.031 496.000 0.000 1.000   -0.558
 2018292 2018293 SPD_1403 SPD_1404 lytC tpiA TRUE 0.267 71.000 0.000 1.000   NA
 2018293 2018294 SPD_1404 SPD_1405 tpiA   FALSE 0.174 98.000 0.007 NA N NA
 2018294 2018295 SPD_1405 SPD_1406   metA TRUE 0.907 9.000 0.021 NA N 0.962
 2018295 2018296 SPD_1406 SPD_1407 metA apt FALSE 0.144 182.000 0.009 1.000 N 0.172
 2018296 2018297 SPD_1407 SPD_1408 apt   TRUE 0.478 70.000 0.002 1.000 N 0.657
 2018297 2018298 SPD_1408 SPD_1409     FALSE 0.043 501.000 0.000 1.000 N 0.795
 2018298 1620081 SPD_1409 SPD_1410     FALSE 0.051 283.000 0.000 NA   0.523
 1620081 2018299 SPD_1410 SPD_1411     FALSE 0.162 82.000 0.000 NA   -0.433
 2018299 2018300 SPD_1411 SPD_1412   codY TRUE 0.981 0.000 0.083 1.000 N 0.003
 2018300 2018301 SPD_1412 SPD_1413 codY   FALSE 0.163 264.000 0.000 1.000 Y 0.933
 2018301 2018302 SPD_1413 SPD_1414     FALSE 0.056 199.000 0.000 1.000 N -0.604
 2018303 2018304 SPD_1415 SPD_1416     FALSE 0.219 99.000 0.010 1.000 N -0.402
 2018304 2018305 SPD_1416 SPD_1417     TRUE 0.994 0.000 0.796 1.000   NA
 2018305 2018306 SPD_1417 SPD_1418   pepQ FALSE 0.075 126.000 0.000 1.000   NA
 2018306 2018307 SPD_1418 SPD_1419 pepQ   TRUE 0.910 -7.000 0.000 1.000   NA
 1620091 1620092 SPD_1420 SPD_1421     FALSE 0.050 226.000 0.000 NA   0.915
 1620092 2018308 SPD_1421 SPD_1422     FALSE 0.040 232.000 0.000 NA   -0.533
 2018308 2018309 SPD_1422 SPD_1423     TRUE 0.984 -22.000 0.276 NA   0.586
 2018309 2018310 SPD_1423 SPD_1424   truA TRUE 0.977 -10.000 0.058 1.000 N 0.732
 2018310 2018311 SPD_1424 SPD_1425 truA   FALSE 0.094 313.000 0.009 1.000   0.520
 2018311 2018312 SPD_1425 SPD_1426     FALSE 0.053 240.000 0.000 NA   0.797
 2018312 2018313 SPD_1426 SPD_1427   phnA TRUE 0.915 3.000 0.011 NA   NA
 2018313 2018314 SPD_1427 SPD_1428 phnA cmk FALSE 0.110 131.000 0.002 1.000 N NA
 2018314 2018315 SPD_1428 SPD_1429 cmk   TRUE 0.868 9.000 0.012 NA   NA
 2018317 2018318 SPD_1431 SPD_1432   galE-1 TRUE 0.985 2.000 0.030 NA Y 0.096
 2018318 2018319 SPD_1432 SPD_1433 galE-1   FALSE 0.061 301.000 0.000 1.000 N 0.500
 2018319 2018320 SPD_1433 SPD_1434     TRUE 0.898 17.000 0.021 NA   0.820
 2018320 2018321 SPD_1434 SPD_1435     TRUE 0.987 -13.000 0.283 NA   0.793
 2018321 2018322 SPD_1435 SPD_1436     FALSE 0.105 102.000 0.000 NA   -0.268
 2018324 2018325 SPD_1438 SPD_1439   rpsO FALSE 0.022 734.000 0.000 NA N NA
 2018325 2018326 SPD_1439 SPD_1440 rpsO   FALSE 0.065 141.000 0.000 1.000   NA
 2018327 2018328 SPD_1441 SPD_1442     FALSE 0.022 619.000 0.000 NA   NA
 2018328 2018329 SPD_1442 SPD_1443     TRUE 0.772 7.000 0.000 NA   NA
 2018329 2018330 SPD_1443 SPD_1444   thrS TRUE 0.601 58.000 0.018 NA   NA
 2018331 2018332 SPD_1445 SPD_1446     TRUE 0.998 -7.000 0.812 1.000 Y 0.684
 2018334 2018335 SPD_1448 SPD_1449     TRUE 0.820 76.000 0.667 NA   0.975
 2018336 2018337 SPD_1450 SPD_1451     TRUE 0.892 -19.000 0.000 NA   0.880
 2018337 2018338 SPD_1451 SPD_1452     FALSE 0.066 151.000 0.000 NA   0.938
 2018338 1620124 SPD_1452 SPD_1453     TRUE 0.930 -3.000 0.000 NA   0.005
 1620124 2018339 SPD_1453 SPD_1454     FALSE 0.091 131.000 0.000 NA   0.154
 2018339 2018340 SPD_1454 SPD_1455     FALSE 0.031 1296.000 0.000 NA   0.640
 2018340 2018341 SPD_1455 SPD_1456     FALSE 0.074 140.000 0.000 NA   -0.116
 2018342 2018343 SPD_1457 SPD_1458 dtd relA TRUE 0.940 30.000 0.177 1.000 N 0.534
 2018346 2018347 SPD_1461 SPD_1462 psaB psaC TRUE 0.992 -3.000 0.043 1.000 Y 0.597
 2018347 2018348 SPD_1462 SPD_1463 psaC   TRUE 0.950 32.000 0.038 1.000 Y 0.851
 2018348 2018349 SPD_1463 SPD_1464   psaD FALSE 0.187 123.000 0.007 1.000 N 0.559
 2018350 2018351 SPD_1465 SPD_1466     TRUE 0.991 2.000 0.438 1.000 N 0.577
 2018351 2018352 SPD_1466 SPD_1467     FALSE 0.058 250.000 0.000 1.000   -0.105
 2018352 2018353 SPD_1467 SPD_1468     TRUE 0.589 53.000 0.000 1.000   0.693
 2018353 2018354 SPD_1468 SPD_1469     TRUE 0.545 51.000 0.000 NA   0.895
 2018354 2018355 SPD_1469 SPD_1470     FALSE 0.046 376.000 0.000 NA   0.394
 2018355 2018356 SPD_1470 SPD_1471     TRUE 0.877 4.000 0.000 NA   0.554
 2018356 2018357 SPD_1471 SPD_1472   ileS FALSE 0.038 448.000 0.000 NA   0.684
 2018357 2018358 SPD_1472 SPD_1473 ileS   FALSE 0.058 253.000 0.000 NA   0.429
 2018358 2018359 SPD_1473 SPD_1474   divIVA TRUE 0.896 -21.000 0.000 NA   0.791
 2018359 2018360 SPD_1474 SPD_1475 divIVA ylmH TRUE 0.983 9.000 0.579 NA   0.041
 2018360 2018361 SPD_1475 SPD_1476 ylmH ylmG TRUE 0.990 -3.000 0.287 1.000   -0.264
 2018361 2018362 SPD_1476 SPD_1477 ylmG ylmF TRUE 0.991 0.000 0.370 NA   0.783
 2018362 2018363 SPD_1477 SPD_1478 ylmF ylmE TRUE 0.951 10.000 0.194 NA   -0.369
 2018363 2018364 SPD_1478 SPD_1479 ylmE ftsZ TRUE 0.942 5.000 0.030 NA   0.437
 2018364 2018365 SPD_1479 SPD_1480 ftsZ ftsA TRUE 0.991 17.000 0.460 1.000 Y 0.515
 2018365 2018366 SPD_1480 SPD_1481 ftsA   FALSE 0.059 219.000 0.000 NA   0.655
 2018366 2018367 SPD_1481 SPD_1482     TRUE 0.256 91.000 0.016 NA   -0.379
 2018367 2018368 SPD_1482 SPD_1483   murF TRUE 0.958 -13.000 0.016 1.000 N 0.982
 2018368 2018369 SPD_1483 SPD_1484 murF ddlA TRUE 0.767 84.000 0.046 0.007 Y NA
 2018369 2018370 SPD_1484 SPD_1485 ddlA recR FALSE 0.112 176.000 0.010 1.000 N NA
 2018370 2018371 SPD_1485 SPD_1486 recR penA TRUE 0.872 11.000 0.013 1.000 N NA
 2018373 2018374 SPD_1488 SPD_1489     TRUE 0.915 18.000 0.054 1.000 N NA
 2018374 2018375 SPD_1489 SPD_1490     FALSE 0.220 369.000 0.333 NA   -0.613
 2018375 2018376 SPD_1490 SPD_1491     FALSE 0.037 287.000 0.000 NA   -0.379
 2018376 2018377 SPD_1491 SPD_1492     FALSE 0.149 97.000 0.000 NA   0.441
 2018377 2018378 SPD_1492 SPD_1493     TRUE 0.425 273.000 0.250 NA Y -0.431
 2018378 2018379 SPD_1493 SPD_1494     TRUE 0.996 16.000 1.000 0.042 Y -0.385
 2018379 2018380 SPD_1494 SPD_1495     TRUE 0.297 231.000 0.000 0.042 Y 0.161
 2018380 2018381 SPD_1495 SPD_1496     TRUE 0.241 125.000 0.000 1.000 Y NA
 2018381 2018382 SPD_1496 SPD_1497   nanE-1 TRUE 0.975 19.000 0.132 1.000 Y NA
 2018382 2018383 SPD_1497 SPD_1498 nanE-1   FALSE 0.055 180.000 0.000 1.000   NA
 2018383 2018384 SPD_1498 SPD_1499   nanB TRUE 0.970 12.000 0.273 1.000   0.155
 2018384 2018385 SPD_1499 SPD_1500 nanB   TRUE 0.943 18.000 0.000 1.000 Y 0.165
 2018385 2018386 SPD_1500 SPD_1501     TRUE 0.998 0.000 0.300 0.042 Y 0.725
 2018386 2018387 SPD_1501 SPD_1502     TRUE 0.880 79.000 0.180 0.042 Y 0.462
 2018387 2018388 SPD_1502 SPD_1503     TRUE 0.963 19.000 0.060 NA Y NA
 2018388 2018389 SPD_1503 SPD_1504   nanA FALSE 0.078 1015.000 0.000 NA Y NA
 2018389 2018390 SPD_1504 SPD_1505 nanA   FALSE 0.043 357.000 0.000 NA   0.608
 2018390 2018391 SPD_1505 SPD_1506     FALSE 0.031 895.000 0.000 NA   0.661
 2018391 2018392 SPD_1506 SPD_1507   recG FALSE 0.058 316.000 0.000 1.000 N 0.201
 2018392 2018393 SPD_1507 SPD_1508 recG alr TRUE 0.941 19.000 0.078 1.000 N 0.537
 2018393 2018394 SPD_1508 SPD_1509 alr acpS TRUE 0.979 -10.000 0.093 1.000 N 0.901
 2018394 2018395 SPD_1509 SPD_1510 acpS   TRUE 0.754 45.000 0.007 1.000 N 0.899
 2018395 2018396 SPD_1510 SPD_1511     TRUE 0.999 2.000 0.750 0.001 Y 0.949
 2018396 2018397 SPD_1511 SPD_1512   secA TRUE 0.420 81.000 0.025 1.000 N 0.850
 2018397 1620184 SPD_1512 SPD_1513 secA   FALSE 0.076 146.000 0.000 NA   0.794
 1620184 2018398 SPD_1513 SPD_1514     TRUE 0.799 11.000 0.000 NA   0.644
 2018398 2018399 SPD_1514 SPD_1515     TRUE 0.814 4.000 0.000 NA   NA
 2018399 2018400 SPD_1515 SPD_1516     TRUE 0.359 59.000 0.000 NA   NA
 2018400 2018401 SPD_1516 SPD_1517     TRUE 0.975 22.000 0.667 NA   -0.362
 2018403 2018404 SPD_1519 SPD_1520     TRUE 0.875 14.000 0.005 1.000   -0.064
 2018404 2018405 SPD_1520 SPD_1521   dnaI TRUE 0.979 -3.000 0.048 1.000 N 0.034
 2018405 2018406 SPD_1521 SPD_1522 dnaI   TRUE 0.998 1.000 0.817 NA Y 0.923
 2018406 2018407 SPD_1522 SPD_1523     TRUE 0.980 1.000 0.109 NA N 0.639
 2018408 2018409 SPD_1524 SPD_1525     TRUE 0.985 5.000 0.412 1.000 N 0.118
 2018409 2018410 SPD_1525 SPD_1526     TRUE 0.970 17.000 0.471 NA   NA
 2018411 2018412 SPD_1527 SPD_1528     TRUE 0.971 -3.000 0.059 NA   -0.543
 1620200 2018413 SPD_1529 SPD_1530     FALSE 0.032 415.000 0.000 NA   -0.303
 2018414 2018415 SPD_1531 SPD_1532 scrK   TRUE 0.543 149.000 0.235 1.000 Y NA
 2018415 2018416 SPD_1532 SPD_1533     FALSE 0.060 127.000 0.000 NA   NA
 2018417 2018418 SPD_1534 SPD_1535 scrB scrR TRUE 0.990 -19.000 0.571 1.000 N NA
 2018419 2018420 SPD_1536 SPD_1537   mvaS TRUE 0.994 0.000 0.183 1.000 Y 0.970
 2018420 2018421 SPD_1537 SPD_1538 mvaS   FALSE 0.122 107.000 0.000 NA   0.512
 2018421 1620210 SPD_1538 SPD_1539     TRUE 0.741 29.000 0.000 NA   0.325
 1620210 2018422 SPD_1539 SPD_1540     TRUE 0.359 65.000 0.000 NA   -0.246
 2018422 2018423 SPD_1540 SPD_1541     TRUE 0.989 2.000 0.400 NA   0.020
 2018423 2018424 SPD_1541 SPD_1542     FALSE 0.166 115.000 0.010 NA   -0.183
 2018424 2018425 SPD_1542 SPD_1543     TRUE 0.998 -3.000 0.704 1.000 Y NA
 2018425 2018426 SPD_1543 SPD_1544   sun TRUE 0.921 15.000 0.074 1.000 N NA
 2018426 2018427 SPD_1544 SPD_1545 sun fmt TRUE 0.996 -7.000 0.305 1.000 Y 0.517
 2018427 2018428 SPD_1545 SPD_1546 fmt priA TRUE 0.929 13.000 0.052 1.000 N 0.010
 2018428 2018429 SPD_1546 SPD_1547 priA   TRUE 0.712 66.000 0.032 0.046 N -0.839
 2018429 2018430 SPD_1547 SPD_1548   gmk TRUE 0.971 25.000 0.471 1.000 N 0.796
 2018430 2018431 SPD_1548 SPD_1549 gmk   FALSE 0.158 130.000 0.010 1.000   0.924
 2018431 2018432 SPD_1549 SPD_1550     FALSE 0.059 191.000 0.000 NA   -0.129
 2018432 2018433 SPD_1550 SPD_1551     TRUE 0.988 4.000 0.615 NA   -0.149
 2018433 2018434 SPD_1551 SPD_1552     FALSE 0.058 232.000 0.000 NA   0.121
 2018434 2018435 SPD_1552 SPD_1553     TRUE 0.939 10.000 0.094 NA   0.018
 2018435 2018436 SPD_1553 SPD_1554     TRUE 0.343 103.000 0.085 NA   0.519
 2018436 2018437 SPD_1554 SPD_1555     TRUE 0.846 13.000 0.008 NA   -0.424
 2018437 2018438 SPD_1555 SPD_1556     TRUE 0.968 1.000 0.024 1.000 N 0.766
 2018438 2018439 SPD_1556 SPD_1557   nadD TRUE 0.995 0.000 0.199 1.000 Y 0.500
 2018439 2018440 SPD_1557 SPD_1558 nadD   TRUE 0.861 52.000 0.150 NA N 0.790
 2018440 2018441 SPD_1558 SPD_1559     FALSE 0.175 215.000 0.068 NA   0.036
 2018441 2018442 SPD_1559 SPD_1560     TRUE 0.990 3.000 0.555 1.000   0.837
 2018442 2018443 SPD_1560 SPD_1561     TRUE 0.903 15.000 0.015 1.000   0.535
 2018443 2018444 SPD_1561 SPD_1562     TRUE 0.856 57.000 0.059 0.074 N 0.762
 2018445 2018446 SPD_1563 SPD_1564     TRUE 0.495 68.000 0.013 NA   -0.270
 2018446 2018447 SPD_1564 SPD_1565     FALSE 0.066 144.000 0.000 NA   -0.285
 2018447 2018448 SPD_1565 SPD_1566     TRUE 0.946 18.000 0.143 NA   -0.115
 2018448 2018449 SPD_1566 SPD_1567   trx TRUE 0.970 17.000 0.364 NA   0.891
 2018449 2018450 SPD_1567 SPD_1568 trx   FALSE 0.037 494.000 0.000 1.000   -0.257
 2018451 2018452 SPD_1569 SPD_1570     FALSE 0.147 111.000 0.010 NA   NA
 2018452 2018453 SPD_1570 SPD_1571     FALSE 0.035 246.000 0.000 NA   NA
 2018453 2018454 SPD_1571 SPD_1572     TRUE 0.874 11.000 0.004 NA   0.336
 2018454 2018455 SPD_1572 SPD_1573   prmA TRUE 0.979 2.000 0.227 NA   NA
 2018455 2018456 SPD_1573 SPD_1574 prmA   FALSE 0.110 138.000 0.004 1.000   NA
 2018456 2018457 SPD_1574 SPD_1575     TRUE 0.887 -34.000 0.000 1.000   0.991
 2018457 2018458 SPD_1575 SPD_1576     TRUE 0.806 19.000 0.000 NA   0.224
 2018458 2018459 SPD_1576 SPD_1577     FALSE 0.049 291.000 0.000 NA   0.536
 2018459 2018460 SPD_1577 SPD_1578     FALSE 0.039 353.000 0.000 NA   0.875
 2018460 2018461 SPD_1578 SPD_1579     FALSE 0.065 165.000 0.000 NA   0.897
 2018462 1620252 SPD_1580 SPD_1581     FALSE 0.055 265.000 0.000 NA   0.261
 2018463 2018464 SPD_1582 SPD_1583     TRUE 0.984 10.000 0.273 1.000 Y NA
 2018464 2018465 SPD_1583 SPD_1584     TRUE 0.999 2.000 0.917 0.042 Y 0.788
 2018465 2018466 SPD_1584 SPD_1585     TRUE 0.921 96.000 0.917 0.042 Y -0.203
 2018466 2018467 SPD_1585 SPD_1586     TRUE 0.500 127.000 0.364 1.000 N 0.539
 2018467 2018468 SPD_1586 SPD_1587     FALSE 0.043 362.000 0.000 NA   0.643
 2018469 2018470 SPD_1588 SPD_1589     TRUE 0.951 12.000 0.143 NA   0.256
 2018470 2018471 SPD_1589 SPD_1590     TRUE 0.844 39.000 0.036 NA   0.595
 2018471 2018472 SPD_1590 SPD_1591     TRUE 0.980 31.000 1.000 NA   0.708
 2018475 2018476 SPD_1594 SPD_1595     TRUE 0.941 15.000 0.182 NA   NA
 2018476 2018477 SPD_1595 SPD_1596   trpA FALSE 0.030 302.000 0.000 NA   NA
 2018477 2018478 SPD_1596 SPD_1597 trpA trpB TRUE 0.998 -7.000 0.248 0.001 Y 0.684
 2018478 2018479 SPD_1597 SPD_1598 trpB trpF TRUE 0.997 -22.000 0.375 0.002 Y 0.914
 2018479 2018480 SPD_1598 SPD_1599 trpF trpC TRUE 0.998 -13.000 0.264 0.002 Y 0.714
 2018480 2018481 SPD_1599 SPD_1600 trpC trpD TRUE 0.996 -3.000 0.216 1.000 Y 0.761
 2018481 2018482 SPD_1600 SPD_1601 trpD trpG TRUE 0.963 11.000 0.018 1.000 Y 0.841
 2018482 2018483 SPD_1601 SPD_1602 trpG trpE TRUE 0.998 -3.000 0.321 0.001 Y 0.729
 2018483 2018484 SPD_1602 SPD_1603 trpE   FALSE 0.085 135.000 0.000 NA   0.056
 2018484 2018485 SPD_1603 SPD_1604     TRUE 0.868 4.000 0.000 NA   0.803
 2018485 2018486 SPD_1604 SPD_1605     FALSE 0.033 774.000 0.000 NA   0.640
 2018486 2018487 SPD_1605 SPD_1606     FALSE 0.044 572.000 0.000 1.000   0.477
 2018487 2018488 SPD_1606 SPD_1607     TRUE 0.938 3.000 0.000 0.073   0.967
 2018488 2018489 SPD_1607 SPD_1608     TRUE 0.989 12.000 0.545 0.041 N 0.396
 2018489 2018490 SPD_1608 SPD_1609     TRUE 0.685 103.000 0.364 0.041 N 0.797
 2018490 2018491 SPD_1609 SPD_1610     TRUE 0.794 25.000 0.000 1.000   0.386
 2018491 2018492 SPD_1610 SPD_1611     FALSE 0.099 128.000 0.000 NA   0.349
 2018492 2018493 SPD_1611 SPD_1612   galE-2 TRUE 0.841 -31.000 0.000 NA   -0.649
 2018493 2018494 SPD_1612 SPD_1613 galE-2 galT-1 TRUE 0.907 13.000 0.000 0.003 N NA
 2018494 2018495 SPD_1613 SPD_1614 galT-1   TRUE 0.721 13.000 0.000 NA N NA
 2018495 2018496 SPD_1614 SPD_1615     TRUE 0.377 58.000 0.000 NA   NA
 2018496 2018497 SPD_1615 SPD_1616     TRUE 0.339 61.000 0.000 NA   NA
 2018497 2018498 SPD_1616 SPD_1617     TRUE 0.905 -16.000 0.000 NA   0.774
 2018500 2018501 SPD_1619 SPD_1620     TRUE 0.976 43.000 0.382 NA Y 0.408
 2018501 2018502 SPD_1620 SPD_1621     FALSE 0.112 173.000 0.018 NA N NA
 2018502 2018503 SPD_1621 SPD_1622     TRUE 0.999 -10.000 0.911 0.007 Y NA
 2018503 2018504 SPD_1622 SPD_1623     FALSE 0.165 128.000 0.018 NA   -0.108
 2018504 2018505 SPD_1623 SPD_1624     TRUE 0.915 -3.000 0.000 NA   -0.317
 2018505 2018506 SPD_1624 SPD_1625     TRUE 0.881 -40.000 0.000 NA   -0.003
 2018507 1620298 SPD_1626 SPD_1627 xth   TRUE 0.724 12.000 0.000 NA   -0.594
 1620298 2018508 SPD_1627 SPD_1628   xpt FALSE 0.035 878.000 0.000 NA   0.367
 2018508 2018509 SPD_1628 SPD_1629 xpt pbuX TRUE 0.991 0.000 0.046 1.000 Y 0.241
 2018510 2018511 SPD_1630 SPD_1631     TRUE 0.928 -3.000 0.000 NA   0.804
 2018511 2018512 SPD_1631 SPD_1632     FALSE 0.065 181.000 0.000 NA   -0.049
 2018512 2018513 SPD_1632 SPD_1633   galT-2 TRUE 0.557 70.000 0.024 NA N 0.470
 2018513 2018514 SPD_1633 SPD_1634 galT-2 galK TRUE 0.990 19.000 0.107 0.003 Y 0.248
 2018516 2018517 SPD_1636 SPD_1637     TRUE 0.939 1.000 0.000 1.000 N 0.277
 2018517 2018518 SPD_1637 SPD_1638     FALSE 0.068 244.000 0.000 1.000 N 0.066
 2018521 2018522 SPD_1642 SPD_1643 proWX proV TRUE 0.992 -7.000 0.382 1.000 N -0.123
 2018522 2018523 SPD_1643 SPD_1644 proV   TRUE 0.908 15.000 0.031 NA   0.123
 2018523 2018524 SPD_1644 SPD_1645     TRUE 0.976 4.000 0.222 NA   0.811
 2018524 2018525 SPD_1645 SPD_1646     FALSE 0.031 682.000 0.000 NA   -0.044
 2018525 2018526 SPD_1646 SPD_1647   pepA TRUE 0.932 22.000 0.100 NA   0.222
 2018527 2018528 SPD_1648 SPD_1649     FALSE 0.033 423.000 0.000 1.000 N NA
 2018528 2018529 SPD_1649 SPD_1650     TRUE 0.999 -10.000 0.870 0.041 Y NA
 2018529 2018530 SPD_1650 SPD_1651     TRUE 0.998 -3.000 0.870 1.000 Y -0.292
 2018530 2018531 SPD_1651 SPD_1652     TRUE 0.572 96.000 0.055 1.000 Y -0.317
 2018532 2018533 SPD_1653 SPD_1654   rluB TRUE 0.963 0.000 0.014 NA   0.552
 2018533 2018534 SPD_1654 SPD_1655 rluB scpB TRUE 0.986 -13.000 0.224 NA N 0.681
 2018534 2018535 SPD_1655 SPD_1656 scpB scpA TRUE 0.980 19.000 0.570 NA   0.318
 2018535 2018536 SPD_1656 SPD_1657 scpA   TRUE 0.950 0.000 0.003 NA   0.613
 2018536 2018537 SPD_1657 SPD_1658     TRUE 0.968 -9.000 0.017 1.000   0.521
 2018537 2018538 SPD_1658 SPD_1659     TRUE 0.981 -3.000 0.065 1.000   0.531
 2018538 2018539 SPD_1659 SPD_1660     TRUE 0.972 -24.000 0.085 1.000   0.707
 2018539 2018540 SPD_1660 SPD_1661   murI TRUE 0.975 -3.000 0.034 1.000 N -0.067
 2018540 2018541 SPD_1661 SPD_1662 murI   FALSE 0.124 207.000 0.014 NA   0.131
 2018541 2018542 SPD_1662 SPD_1663   treC FALSE 0.053 142.000 0.000 NA   NA
 2018542 2018543 SPD_1663 SPD_1664 treC   TRUE 0.675 178.000 0.650 1.000 Y NA
 2018544 1620337 SPD_1665 SPD_1666 treR   FALSE 0.069 156.000 0.000 NA   0.876
 2018545 2018546 SPD_1667 SPD_1668 amiF amiE TRUE 0.994 11.000 0.333 0.002 Y 0.486
 2018546 2018547 SPD_1668 SPD_1669 amiE amiD TRUE 0.994 9.000 0.650 1.000 Y 0.796
 2018547 2018548 SPD_1669 SPD_1670 amiD amiC TRUE 0.994 0.000 0.278 0.041   0.845
 2018548 2018549 SPD_1670 SPD_1671 amiC amiA TRUE 0.928 67.000 0.600 0.041   0.796
 2018549 2018550 SPD_1671 SPD_1672 amiA   FALSE 0.036 687.000 0.000 NA N 0.511
 2018550 2018551 SPD_1672 SPD_1673   gtfA FALSE 0.095 138.000 0.000 NA N 0.370
 2018551 2018552 SPD_1673 SPD_1674 gtfA   FALSE 0.072 184.000 0.000 NA   0.201
 2018552 2018553 SPD_1674 SPD_1675   rafG TRUE 0.832 7.000 0.000 NA   0.837
 2018553 2018554 SPD_1675 SPD_1676 rafG rafF TRUE 0.996 14.000 0.925 0.041 Y -0.283
 2018554 2018555 SPD_1676 SPD_1677 rafF rafE TRUE 0.991 14.000 0.275 0.041 Y 0.007
 2018555 2018556 SPD_1677 SPD_1678 rafE aga TRUE 0.803 92.000 0.286 1.000 Y 0.327
 2018557 2018558 SPD_1679 SPD_1680 msmR   TRUE 0.939 -3.000 0.000 1.000 N 0.885
 2018558 1620352 SPD_1680 SPD_1681     FALSE 0.066 208.000 0.000 NA   0.232
 1620353 1620354 SPD_1682 SPD_1683     TRUE 0.856 7.000 0.000 NA   0.382
 1620354 1620355 SPD_1683 SPD_1684     TRUE 0.704 36.000 0.000 NA   0.263
 1620355 1620356 SPD_1684 SPD_1685     TRUE 0.801 20.000 0.000 NA   0.380
 1620356 1620357 SPD_1685 SPD_1686     TRUE 0.884 4.000 0.000 NA   0.320
 1620357 1620358 SPD_1686 SPD_1687     TRUE 0.797 14.000 0.000 NA   0.524
 1620358 1620359 SPD_1687 SPD_1688     TRUE 0.721 11.000 0.000 NA   -0.619
 1620359 1620360 SPD_1688 SPD_1689     TRUE 0.716 14.000 0.000 NA   -0.587
 1620360 1620361 SPD_1689 SPD_1690     TRUE 0.860 6.000 0.000 NA   0.444
 1620361 1620362 SPD_1690 SPD_1691     TRUE 0.789 16.000 0.000 NA   0.805
 1620362 1620363 SPD_1691 SPD_1692     TRUE 0.722 10.000 0.000 NA   NA
 1620363 1620364 SPD_1692 SPD_1693     TRUE 0.762 8.000 0.000 NA   NA
 1620364 1620365 SPD_1693 SPD_1694     TRUE 0.666 23.000 0.000 NA   NA
 1620365 1620366 SPD_1694 SPD_1695     TRUE 0.798 19.000 0.000 NA   0.092
 1620366 1620367 SPD_1695 SPD_1696     TRUE 0.827 6.000 0.000 NA   0.938
 1620367 1620368 SPD_1696 SPD_1697     TRUE 0.764 25.000 0.000 NA   0.336
 1620368 1620369 SPD_1697 SPD_1698     TRUE 0.889 3.000 0.000 NA   0.112
 1620369 1620370 SPD_1698 SPD_1699   rrfB TRUE 0.871 5.000 0.000 NA   0.255
 1620370 1620371 SPD_1699 SPD_1700 rrfB rrlB TRUE 0.256 77.000 0.000 NA   0.708
 1620371 1620372 SPD_1700 SPD_1701 rrlB   FALSE 0.094 125.000 0.000 NA   0.061
 1620372 1620373 SPD_1701 SPD_1702   rrsB FALSE 0.071 127.000 0.000 NA   -0.375
 1620373 1620374 SPD_1702 SPD_1703 rrsB   FALSE 0.042 266.000 0.000 NA   0.966
 1620374 2018559 SPD_1703 SPD_1704   rumA-2 TRUE 0.410 62.000 0.000 NA   0.888
 2018560 2018561 SPD_1705 SPD_1706 recX   TRUE 0.316 89.000 0.025 NA   -0.110
 2018564 2018565 SPD_1709 SPD_1710 groL groES TRUE 0.990 16.000 0.160 0.006 Y 0.850
 2018565 2018566 SPD_1710 SPD_1711 groES   TRUE 0.254 156.000 0.083 1.000 N 0.716
 2018566 2018567 SPD_1711 SPD_1712     TRUE 0.250 78.000 0.000 1.000   0.904
 2018567 2018568 SPD_1712 SPD_1713     TRUE 0.857 33.000 0.020 1.000   0.641
 2018568 2018569 SPD_1713 SPD_1714     TRUE 0.956 16.000 0.239 1.000   -0.785
 2018569 2018570 SPD_1714 SPD_1715     TRUE 0.982 -3.000 0.140 NA   0.991
 2018570 2018571 SPD_1715 SPD_1716     FALSE 0.027 337.000 0.000 NA   -0.793
 2018571 2018572 SPD_1716 SPD_1717     FALSE 0.073 161.000 0.000 NA   0.756
 2018572 2018573 SPD_1717 SPD_1718     TRUE 0.987 6.000 0.714 NA   -0.175
 2018573 2018574 SPD_1718 SPD_1719     FALSE 0.214 114.000 0.053 NA   NA
 2018574 2018575 SPD_1719 SPD_1720     TRUE 0.896 -3.000 0.000 NA   NA
 2018575 2018576 SPD_1720 SPD_1721     TRUE 0.396 66.000 0.000 NA   0.555
 2018576 1620393 SPD_1721 SPD_1722     TRUE 0.823 7.000 0.000 NA   0.909
 1620393 2018577 SPD_1722 SPD_1723     TRUE 0.789 17.000 0.000 NA   0.835
 2018577 1620395 SPD_1723 SPD_1724     TRUE 0.798 12.000 0.000 NA   0.052
 1620395 2018578 SPD_1724 SPD_1725     FALSE 0.095 124.000 0.000 NA   0.044
 2018578 2018579 SPD_1725 SPD_1726   ply FALSE 0.027 881.000 0.000 NA   0.920
 2018579 2018580 SPD_1726 SPD_1727 ply   TRUE 0.761 11.000 0.000 NA   -0.280
 2018580 2018581 SPD_1727 SPD_1728     TRUE 0.934 -7.000 0.000 NA   0.292
 2018581 2018582 SPD_1728 SPD_1729     TRUE 0.708 13.000 0.000 NA   NA
 2018583 2018584 SPD_1731 SPD_1732     TRUE 0.492 59.000 0.000 NA   0.273
 2018584 2018585 SPD_1732 SPD_1733     TRUE 0.922 -10.000 0.000 NA   0.657
 2018585 2018586 SPD_1733 SPD_1734     TRUE 0.806 4.000 0.000 NA   -0.843
 2018586 2018587 SPD_1734 SPD_1735     FALSE 0.038 408.000 0.000 NA   0.804
 2018587 2018588 SPD_1735 SPD_1736     FALSE 0.092 129.000 0.000 NA   0.555
 2018588 2018589 SPD_1736 SPD_1737   lytA FALSE 0.029 771.000 0.000 NA   -0.092
 2018589 2018590 SPD_1737 SPD_1738 lytA dinF FALSE 0.045 376.000 0.000 1.000   0.891
 2018590 2018591 SPD_1738 SPD_1739 dinF recA FALSE 0.058 307.000 0.000 1.000 N 0.543
 2018591 2018592 SPD_1739 SPD_1740 recA cinA TRUE 0.819 55.000 0.083 1.000   0.121
 2018592 2018593 SPD_1740 SPD_1741 cinA   TRUE 0.257 85.000 0.004 NA   -0.068
 2018593 2018594 SPD_1741 SPD_1742     TRUE 0.974 8.000 0.283 NA N 0.779
 2018594 2018595 SPD_1742 SPD_1743     TRUE 0.965 -10.000 0.033 NA   -0.156
 2018595 2018596 SPD_1743 SPD_1744     TRUE 0.241 86.000 0.003 NA   -0.092
 2018596 2018597 SPD_1744 SPD_1745     FALSE 0.045 383.000 0.000 NA   0.374
 2018598 2018599 SPD_1746 SPD_1747     FALSE 0.123 103.000 0.000 NA   0.700
 2018599 2018600 SPD_1747 SPD_1748     TRUE 0.982 7.000 0.500 NA   0.802
 2018600 2018601 SPD_1748 SPD_1749     TRUE 0.463 116.000 0.273 NA   0.305
 2018601 2018602 SPD_1749 SPD_1750   wrbA FALSE 0.049 350.000 0.000 1.000   -0.007
 2018602 2018603 SPD_1750 SPD_1751 wrbA   TRUE 0.918 -19.000 0.000 1.000   0.613
 2018603 2018604 SPD_1751 SPD_1752     TRUE 0.970 -3.000 0.000 0.025   -0.314
 2018604 2018605 SPD_1752 SPD_1753     TRUE 0.863 24.000 0.000 0.025   NA
 2018605 2018606 SPD_1753 SPD_1754     TRUE 0.462 51.000 0.000 NA   NA
 2018606 2018607 SPD_1754 SPD_1755     TRUE 0.994 2.000 1.000 NA   -0.183
 2018607 2018608 SPD_1755 SPD_1756     FALSE 0.082 158.000 0.000 NA   0.398
 2018609 2018610 SPD_1757 SPD_1758 ndk rpoC FALSE 0.188 111.000 0.002 1.000 N 0.524
 2018610 2018611 SPD_1758 SPD_1759 rpoC rpoB TRUE 0.995 33.000 0.851 0.002 Y 0.656
 2018612 2018613 SPD_1761 SPD_1762     FALSE 0.062 229.000 0.000 NA   0.256
 2018613 2018614 SPD_1762 SPD_1763     TRUE 0.920 39.000 0.237 NA   -0.303
 2018614 2018615 SPD_1763 SPD_1764   murA-2 TRUE 0.974 -25.000 0.110 NA   0.397
 2018615 2018616 SPD_1764 SPD_1765 murA-2   FALSE 0.055 312.000 0.000 1.000 N 0.029
 2018616 2018617 SPD_1765 SPD_1766   coaD TRUE 0.947 -16.000 0.003 1.000 N -0.071
 2018617 2018618 SPD_1766 SPD_1767 coaD   TRUE 0.965 -10.000 0.008 1.000 N 0.336
 2018618 2018619 SPD_1767 SPD_1768   asnA TRUE 0.507 65.000 0.006 1.000 N -0.754
 2018621 2018622 SPD_1769 SPD_1771     TRUE 0.740 32.000 0.005 NA   NA
 2018623 2018624 SPD_1772 SPD_1773     TRUE 0.585 78.000 0.154 1.000 N NA
 2018625 2018626 SPD_1774 SPD_1775 pflA lysA FALSE 0.182 126.000 0.007 1.000 N 0.607
 2018626 2018627 SPD_1775 SPD_1776 lysA purR TRUE 0.583 67.000 0.012 1.000 N 0.655
 2018627 2018628 SPD_1776 SPD_1777 purR cbf1 FALSE 0.120 267.000 0.052 1.000   NA
 2018628 2018629 SPD_1777 SPD_1778 cbf1   TRUE 0.942 -22.000 0.030 NA   NA
 2018629 2018630 SPD_1778 SPD_1779     TRUE 0.954 2.000 0.030 NA   -0.298
 2018630 2018631 SPD_1779 SPD_1780   rpe TRUE 0.980 -37.000 0.166 1.000 N 0.213
 2018631 2018632 SPD_1780 SPD_1781 rpe rsgA TRUE 0.961 11.000 0.213 1.000   -0.072
 2018632 2018633 SPD_1781 SPD_1782 rsgA ksgA TRUE 0.948 2.000 0.003 1.000   0.467
 2018633 2018634 SPD_1782 SPD_1783 ksgA   FALSE 0.089 131.000 0.000 NA   0.583
 2018634 2018635 SPD_1783 SPD_1784     TRUE 0.918 -7.000 0.000 NA   -0.163
 2018635 2018636 SPD_1784 SPD_1785     TRUE 0.912 2.000 0.000 NA   0.465
 2018636 2018637 SPD_1785 SPD_1786     FALSE 0.051 269.000 0.000 NA   0.074
 2018637 2018638 SPD_1786 SPD_1787     TRUE 0.322 72.000 0.000 1.000   0.886
 2018638 2018639 SPD_1787 SPD_1788     TRUE 0.991 0.000 0.058 NA Y 0.290
 2018639 2018640 SPD_1788 SPD_1789     FALSE 0.049 306.000 0.000 NA   0.217
 2018640 2018641 SPD_1789 SPD_1790   rpmH FALSE 0.066 263.000 0.000 1.000   0.252
 2018641 2018642 SPD_1790 SPD_1791 rpmH   FALSE 0.095 145.000 0.002 1.000   NA
 2018642 2018643 SPD_1791 SPD_1792     FALSE 0.089 156.000 0.005 NA   NA
 2018647 2018648 SPD_1795 SPD_1797   ccpA FALSE 0.083 127.000 0.000 NA   0.882
 2018648 2018649 SPD_1797 SPD_1798 ccpA   FALSE 0.220 425.000 0.000 0.030 Y -0.088
 2018649 2018650 SPD_1798 SPD_1799     TRUE 0.999 2.000 0.857 0.010 Y 0.439
 2018650 2018651 SPD_1799 SPD_1800     TRUE 0.981 0.000 0.107 NA N 0.681
 2018651 2018652 SPD_1800 SPD_1801     TRUE 0.991 2.000 0.193 NA Y NA
 2018652 2018653 SPD_1801 SPD_1802     TRUE 0.947 -13.000 0.023 NA   NA
 2018653 2018654 SPD_1802 SPD_1803     TRUE 0.996 -3.000 1.000 NA   0.460
 2018654 1620475 SPD_1803 SPD_1804     FALSE 0.034 615.000 0.000 NA   0.712
 1620475 1620476 SPD_1804 SPD_1805     TRUE 0.749 16.000 0.000 NA   -0.374
 1620476 1620477 SPD_1805 SPD_1806     TRUE 0.710 10.000 0.000 NA   -0.867
 1620477 1620478 SPD_1806 SPD_1807     TRUE 0.762 8.000 0.000 NA   NA
 1620478 1620479 SPD_1807 SPD_1808     TRUE 0.666 23.000 0.000 NA   NA
 1620479 1620480 SPD_1808 SPD_1809     TRUE 0.799 19.000 0.000 NA   0.556
 1620480 1620481 SPD_1809 SPD_1810     TRUE 0.861 6.000 0.000 NA   0.270
 1620481 1620482 SPD_1810 SPD_1811     TRUE 0.764 25.000 0.000 NA   0.322
 1620482 1620483 SPD_1811 SPD_1812     TRUE 0.865 3.000 0.000 NA   0.957
 1620483 1620484 SPD_1812 SPD_1813   rrfC TRUE 0.852 5.000 0.000 NA   0.836
 1620484 1620485 SPD_1813 SPD_1814 rrfC rrlC TRUE 0.247 77.000 0.000 NA   -0.028
 1620485 1620486 SPD_1814 SPD_1815 rrlC   FALSE 0.081 125.000 0.000 NA   -0.209
 1620486 1620487 SPD_1815 SPD_1816   rrsC FALSE 0.076 127.000 0.000 NA   0.978
 1620487 1620488 SPD_1816 SPD_1817 rrsC   FALSE 0.044 266.000 0.000 NA   0.932
 1620488 2018655 SPD_1817 SPD_1818   comX2 FALSE 0.148 94.000 0.000 NA   0.759
 2018655 2018656 SPD_1818 SPD_1819 comX2 nusG FALSE 0.224 122.000 0.002 0.040   -0.527
 2018656 2018657 SPD_1819 SPD_1820 nusG secE TRUE 0.955 55.000 0.843 1.000 N 0.028
 2018657 2018658 SPD_1820 SPD_1821 secE pbp2A FALSE 0.072 215.000 0.000 1.000 N 0.005
 2018660 2018661 SPD_1823 SPD_1824 gap   FALSE 0.083 177.000 0.000 1.000   0.680
 2018661 1620496 SPD_1824 SPD_1825     FALSE 0.033 564.000 0.000 NA   0.822
 1620496 2018662 SPD_1825 SPD_1826   nadC FALSE 0.095 131.000 0.000 NA   0.332
 2018664 2018665 SPD_1828 SPD_1829     FALSE 0.043 523.000 0.000 1.000   0.086
 2018666 2018667 SPD_1830 SPD_1831     TRUE 0.941 18.000 0.000 1.000 Y 0.675
 2018667 2018668 SPD_1831 SPD_1832     TRUE 0.980 5.000 0.000 0.017 Y 0.572
 2018668 2018669 SPD_1832 SPD_1833     TRUE 0.991 -3.000 0.000 0.017 Y 0.107
 2018670 2018671 SPD_1834 SPD_1835     FALSE 0.067 203.000 0.000 NA   0.179
 2018671 2018672 SPD_1835 SPD_1836     TRUE 0.867 -40.000 0.000 NA   -0.204
 2018672 2018673 SPD_1836 SPD_1837     TRUE 0.947 2.000 0.019 NA   -0.336
 2018673 2018674 SPD_1837 SPD_1838   yajC-2 TRUE 0.700 47.000 0.002 NA N 0.742
 2018674 2018675 SPD_1838 SPD_1839 yajC-2 tkt FALSE 0.086 117.000 0.000 NA N -0.331
 2018675 2018676 SPD_1839 SPD_1840 tkt   FALSE 0.106 114.000 0.000 NA   0.734
 2018676 2018677 SPD_1840 SPD_1841     TRUE 0.378 112.000 0.231 NA   -0.709
 2018677 2018678 SPD_1841 SPD_1842   araD TRUE 0.332 179.000 0.200 1.000 N 0.140
 2018678 2018679 SPD_1842 SPD_1843 araD   TRUE 0.997 2.000 0.700 1.000 Y -0.102
 2018679 2018680 SPD_1843 SPD_1844     TRUE 0.995 4.000 0.536 1.000 Y 0.403
 2018680 2018681 SPD_1844 SPD_1845     TRUE 0.989 17.000 0.328 1.000 Y 0.436
 2018681 2018682 SPD_1845 SPD_1846     TRUE 0.908 77.000 0.279 0.017 Y NA
 2018682 2018683 SPD_1846 SPD_1847     TRUE 0.979 23.000 0.431 0.027   NA
 2018683 2018684 SPD_1847 SPD_1848     FALSE 0.212 131.000 0.039 NA   0.447
 2018684 2018685 SPD_1848 SPD_1849     TRUE 0.712 51.000 0.008 NA   0.702
 2018685 2018686 SPD_1849 SPD_1850     TRUE 0.941 19.000 0.106 1.000   0.911
 2018686 2018687 SPD_1850 SPD_1851   rnpA TRUE 0.966 -31.000 0.052 1.000 N 0.057
 2018687 2018688 SPD_1851 SPD_1852 rnpA   TRUE 0.786 17.000 0.000 NA   0.854
 2018688 2018689 SPD_1852 SPD_1853   ackA TRUE 0.917 1.000 0.000 NA   0.747
 2018689 2018690 SPD_1853 SPD_1854 ackA   TRUE 0.882 51.000 0.130 1.000 N 0.324
 2018690 2018691 SPD_1854 SPD_1855     TRUE 0.383 61.000 0.000 1.000   -0.828
 2018691 2018692 SPD_1855 SPD_1856     TRUE 0.704 32.000 0.000 NA   0.723
 2018692 2018693 SPD_1856 SPD_1857     FALSE 0.065 137.000 0.000 NA   -0.366
 2018693 2018694 SPD_1857 SPD_1858     TRUE 0.983 -22.000 0.232 NA   0.358
 2018694 2018695 SPD_1858 SPD_1859     TRUE 0.982 -37.000 0.250 NA   0.416
 2018695 2018696 SPD_1859 SPD_1860   clgD TRUE 0.990 5.000 0.786 NA   0.142
 2018696 2018697 SPD_1860 SPD_1861 clgD cglC TRUE 0.992 -7.000 0.110 NA Y 0.900
 2018697 2018698 SPD_1861 SPD_1862 cglC cglB TRUE 0.999 2.000 0.861 0.001 Y 0.869
 2018698 2018699 SPD_1862 SPD_1863 cglB cglA TRUE 0.868 92.000 0.639 1.000 Y 0.641
 2018699 2018700 SPD_1863 SPD_1864 cglA   TRUE 0.582 76.000 0.083 NA   0.504
 2018700 2018701 SPD_1864 SPD_1865     FALSE 0.203