MicrobesOnline Operon Predictions for Acaryochloris marina MBIC11017

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 3458193 3458194 AM1_0001 AM1_0003     FALSE 0.399 46.000 0.000 NA   NA
 3458195 3458196 AM1_0004 AM1_0005     FALSE 0.417 -22.000 0.000 NA   NA
 3458196 3458197 AM1_0005 AM1_0006     FALSE 0.160 162.000 0.000 NA   NA
 3458197 3458198 AM1_0006 AM1_0007     TRUE 0.918 15.000 0.007 NA   NA
 3458198 3458199 AM1_0007 AM1_0008     TRUE 0.626 187.000 0.011 NA   NA
 3458200 3458201 AM1_0009 AM1_0010   aroH TRUE 0.894 47.000 0.018 1.000   NA
 3458201 3458202 AM1_0010 AM1_0011 aroH sppA TRUE 0.704 192.000 0.207 1.000 N NA
 3458203 3458204 AM1_0012 AM1_0013     FALSE 0.083 255.000 0.000 NA   NA
 3458205 3458206 AM1_0014 AM1_0015     FALSE 0.235 103.000 0.000 NA   NA
 3458206 3458207 AM1_0015 AM1_0016     FALSE 0.204 127.000 0.000 NA   NA
 3458207 3458208 AM1_0016 AM1_0017     TRUE 0.734 94.000 0.000 0.025 Y NA
 3458208 3458209 AM1_0017 AM1_0018     TRUE 0.882 13.000 0.000 1.000 Y NA
 3458211 3458212 AM1_0020 AM1_0021     FALSE 0.112 261.000 0.000 1.000   NA
 3458212 3458213 AM1_0021 AM1_0022     FALSE 0.244 147.000 0.000 1.000   NA
 3458213 3458214 AM1_0022 AM1_0023     TRUE 0.542 26.000 0.000 1.000   NA
 3458214 3458215 AM1_0023 AM1_0024     FALSE 0.058 342.000 0.000 NA   NA
 3458216 3458217 AM1_0025 AM1_0026     FALSE 0.278 89.000 0.000 NA   NA
 3458217 3458218 AM1_0026 AM1_0028     FALSE 0.235 103.000 0.000 NA   NA
 3458220 3458221 AM1_0029 AM1_0030     FALSE 0.110 212.000 0.000 NA   NA
 3458224 3458225 AM1_0033 AM1_0034     TRUE 0.923 24.000 0.113 NA   NA
 3458225 3458226 AM1_0034 AM1_0035     TRUE 0.920 29.000 0.167 NA   NA
 3458226 3458227 AM1_0035 AM1_0036     TRUE 0.762 125.000 0.038 NA   NA
 3458227 3458228 AM1_0036 AM1_0037     TRUE 0.949 6.000 0.042 1.000   NA
 3458228 3458229 AM1_0037 AM1_0038     TRUE 0.629 237.000 0.467 NA   NA
 3458229 3458230 AM1_0038 AM1_0039     FALSE 0.101 223.000 0.000 NA   NA
 3458230 3458231 AM1_0039 AM1_0040     FALSE 0.067 299.000 0.000 NA   NA
 3458231 3458232 AM1_0040 AM1_0041     FALSE 0.132 191.000 0.000 NA   NA
 3458233 3458234 AM1_0042 AM1_0043   nblB FALSE 0.426 32.000 0.000 NA   NA
 3458234 3458235 AM1_0043 AM1_0044 nblB   TRUE 0.560 -10.000 0.000 1.000   NA
 3458235 3458236 AM1_0044 AM1_0045     FALSE 0.394 49.000 0.000 NA   NA
 3458236 3458237 AM1_0045 AM1_0046     FALSE 0.310 79.000 0.000 NA   NA
 3458237 3458238 AM1_0046 AM1_0047     FALSE 0.297 83.000 0.000 NA   NA
 3458238 3458239 AM1_0047 AM1_0048     FALSE 0.070 290.000 0.000 NA   NA
 3458240 3458241 AM1_0049 AM1_0050     FALSE 0.197 132.000 0.000 NA   NA
 3458241 3458242 AM1_0050 AM1_0051     FALSE 0.129 193.000 0.000 NA   NA
 3458242 3458243 AM1_0051 AM1_0052     FALSE 0.047 420.000 0.000 NA   NA
 3458245 3458246 AM1_0054 AM1_0055     TRUE 0.564 4.000 0.000 NA   NA
 3458246 3458247 AM1_0055 AM1_0056     FALSE 0.360 64.000 0.000 NA   NA
 3458248 3458249 AM1_0057 AM1_0058     FALSE 0.114 207.000 0.000 NA   NA
 3458249 3458250 AM1_0058 AM1_0059     FALSE 0.274 90.000 0.000 NA   NA
 3458250 3458251 AM1_0059 AM1_0060     FALSE 0.378 56.000 0.000 NA   NA
 3458251 3458252 AM1_0060 AM1_0061     FALSE 0.090 432.000 0.000 0.042   NA
 3458252 3458253 AM1_0061 AM1_0062     TRUE 0.860 -6.000 0.000 1.000 Y NA
 3458254 3458255 AM1_0063 AM1_0064     FALSE 0.034 605.000 0.000 NA   NA
 3458255 3458256 AM1_0064 AM1_0065     FALSE 0.135 187.000 0.000 NA   NA
 3458256 3458257 AM1_0065 AM1_0066     TRUE 0.475 20.000 0.000 NA   NA
 3458257 3458258 AM1_0066 AM1_0067   typA FALSE 0.288 86.000 0.000 NA   NA
 3458259 3458260 AM1_0068 AM1_0069     FALSE 0.318 349.000 0.000 0.037 Y NA
 3458260 3458261 AM1_0069 AM1_0070     FALSE 0.219 114.000 0.000 NA   NA
 3458264 3458265 AM1_0073 AM1_0074     FALSE 0.405 40.000 0.000 NA   NA
 3458266 3458267 AM1_0075 AM1_0076     FALSE 0.358 65.000 0.000 NA   NA
 3458267 3458268 AM1_0076 AM1_0077     TRUE 0.519 -3.000 0.000 NA   NA
 3458268 3458269 AM1_0077 AM1_0078     TRUE 0.450 -13.000 0.000 NA   NA
 3458269 3458270 AM1_0078 AM1_0079   corA FALSE 0.222 111.000 0.000 NA   NA
 3458270 3458271 AM1_0079 AM1_0080 corA   FALSE 0.253 104.000 0.000 1.000 N NA
 3458271 3458272 AM1_0080 AM1_0081     FALSE 0.207 141.000 0.000 1.000 N NA
 3458272 3458273 AM1_0081 AM1_0082     FALSE 0.098 291.000 0.000 1.000   NA
 3458273 3458274 AM1_0082 AM1_0083     FALSE 0.390 81.000 0.000 1.000   NA
 3458274 3458275 AM1_0083 AM1_0084     FALSE 0.065 434.000 0.000 1.000   NA
 3458279 3458280 AM1_0088 AM1_0089     FALSE 0.196 133.000 0.000 NA   NA
 3458281 3458282 AM1_0090 AM1_0091     FALSE 0.255 103.000 0.000 1.000 N NA
 3458282 3458283 AM1_0091 AM1_0092     FALSE 0.384 -40.000 0.000 NA   NA
 3458284 3458285 AM1_0093 AM1_0094     FALSE 0.169 156.000 0.000 NA   NA
 3458287 3458288 AM1_0096 AM1_0097     TRUE 0.519 -3.000 0.000 NA   NA
 3458288 3458289 AM1_0097 AM1_0098     TRUE 0.936 -7.000 0.250 NA   NA
 3458295 3458296 AM1_0104 AM1_0105     FALSE 0.068 295.000 0.000 NA   NA
 3458296 3458297 AM1_0105 AM1_0106     FALSE 0.070 289.000 0.000 NA   NA
 3458297 3458298 AM1_0106 AM1_0107     TRUE 0.439 28.000 0.000 NA   NA
 3458300 3458301 AM1_0109 AM1_0110   coaBC TRUE 0.895 34.000 0.030 NA   NA
 3458303 3458304 AM1_0112 AM1_0113 moaC   FALSE 0.187 142.000 0.000 NA   NA
 3458304 3458305 AM1_0113 AM1_0114     FALSE 0.171 154.000 0.000 NA   NA
 3458305 3458306 AM1_0114 AM1_0115     FALSE 0.194 135.000 0.000 NA   NA
 3458308 3458309 AM1_0117 AM1_0118     TRUE 0.560 9.000 0.000 NA   NA
 3458309 3458310 AM1_0118 AM1_0119   rpoE TRUE 0.912 -36.000 0.333 NA   NA
 3458310 3458311 AM1_0119 AM1_0120 rpoE   FALSE 0.135 187.000 0.000 NA   NA
 3458313 3458314 AM1_0122 AM1_0123     FALSE 0.189 141.000 0.000 NA   NA
 3458314 3458315 AM1_0123 AM1_0125     TRUE 0.475 20.000 0.000 NA   NA
 3458316 10702622 AM1_0124 AM1_0126     FALSE 0.307 80.000 0.000 NA   NA
 10702622 3458317 AM1_0126 AM1_0127     FALSE 0.155 168.000 0.000 NA   NA
 3458317 3458318 AM1_0127 AM1_0128     FALSE 0.235 103.000 0.000 NA   NA
 3458318 3458319 AM1_0128 AM1_0129     FALSE 0.192 138.000 0.000 NA   NA
 3458320 3458321 AM1_0130 AM1_0131     FALSE 0.410 37.000 0.000 NA   NA
 3458321 3458322 AM1_0131 AM1_0132   ndhC FALSE 0.142 193.000 0.000 1.000 N NA
 3458322 3458323 AM1_0132 AM1_0133 ndhC ndhJ TRUE 0.946 76.000 0.014 0.003 Y NA
 3458324 3458325 AM1_0134 AM1_0135 ino1   FALSE 0.288 86.000 0.000 NA   NA
 3458325 3458326 AM1_0135 AM1_0136     FALSE 0.034 617.000 0.000 NA   NA
 3458326 3458327 AM1_0136 AM1_0137     TRUE 0.755 94.000 0.003 NA N NA
 3458328 3458329 AM1_0138 AM1_0139     FALSE 0.233 104.000 0.000 NA   NA
 3458329 3458330 AM1_0139 AM1_0140   glk FALSE 0.120 201.000 0.000 NA   NA
 3458330 3458331 AM1_0140 AM1_0141 glk   FALSE 0.274 96.000 0.000 1.000 N NA
 3458331 3458332 AM1_0141 AM1_0142     FALSE 0.257 102.000 0.000 1.000 N NA
 3458332 3458333 AM1_0142 AM1_0143     FALSE 0.039 504.000 0.000 NA   NA
 3458334 3458335 AM1_0144 AM1_0145     FALSE 0.158 164.000 0.000 NA   NA
 3458338 3458339 AM1_0148 AM1_0149   ispG FALSE 0.145 177.000 0.000 NA   NA
 3458341 3458342 AM1_0151 AM1_0152     TRUE 0.946 6.000 0.077 NA   NA
 3458342 3458343 AM1_0152 AM1_0153     TRUE 0.548 0.000 0.000 NA   NA
 3458343 3458344 AM1_0153 AM1_0154     FALSE 0.065 307.000 0.000 NA   NA
 3458345 3458346 AM1_0155 AM1_0156     FALSE 0.297 83.000 0.000 NA   NA
 3458346 3458347 AM1_0156 AM1_0157     FALSE 0.209 123.000 0.000 NA   NA
 3458347 3458348 AM1_0157 AM1_0158     FALSE 0.252 96.000 0.000 NA   NA
 3458348 3458349 AM1_0158 AM1_0159     FALSE 0.053 369.000 0.000 NA   NA
 3458351 3458352 AM1_0161 AM1_0162     FALSE 0.197 132.000 0.000 NA   NA
 3458352 3458353 AM1_0162 AM1_0163     FALSE 0.319 41.000 0.000 NA N NA
 3458353 3458354 AM1_0163 AM1_0164     FALSE 0.054 362.000 0.000 NA   NA
 3458358 3458359 AM1_0168 AM1_0169 sphX   FALSE 0.225 178.000 0.000 0.027 N NA
 3458359 3458360 AM1_0169 AM1_0170     TRUE 0.986 5.000 1.000 0.027 Y NA
 3458360 3458361 AM1_0170 AM1_0171     TRUE 0.841 40.000 0.000 0.037 Y NA
 3458361 3458362 AM1_0171 AM1_0172     FALSE 0.197 148.000 0.000 1.000 N NA
 3458364 3458365 AM1_0174 AM1_0175 pstB pstA TRUE 0.679 128.000 0.000 0.002 Y NA
 3458365 3458366 AM1_0175 AM1_0176 pstA pstC TRUE 0.983 -3.000 0.485 0.002 Y NA
 3458366 3458367 AM1_0176 AM1_0177 pstC sphX TRUE 0.853 162.000 0.014 1.000 Y NA
 3458368 3458369 AM1_0178 AM1_0179     FALSE 0.043 457.000 0.000 NA   NA
 3458374 3458375 AM1_0184 AM1_0185     FALSE 0.278 89.000 0.000 NA   NA
 3458375 3458376 AM1_0185 AM1_0186     FALSE 0.067 300.000 0.000 NA   NA
 3458376 3458377 AM1_0186 AM1_0187   hli FALSE 0.162 161.000 0.000 NA   NA
 3458377 3458378 AM1_0187 AM1_0188 hli folP FALSE 0.245 98.000 0.000 NA   NA
 3458378 3458379 AM1_0188 AM1_0189 folP   FALSE 0.084 254.000 0.000 NA   NA
 3458379 3458380 AM1_0189 AM1_0190     TRUE 0.548 0.000 0.000 NA   NA
 3458380 3458381 AM1_0190 AM1_0191     FALSE 0.217 117.000 0.000 NA   NA
 3458381 3458382 AM1_0191 AM1_0192     FALSE 0.041 484.000 0.000 NA   NA
 3458385 3458386 AM1_0195 AM1_0196     FALSE 0.213 120.000 0.000 NA   NA
 3458386 3458387 AM1_0196 AM1_0197     FALSE 0.116 256.000 0.000 1.000   NA
 3458387 3458388 AM1_0197 AM1_0198     FALSE 0.050 387.000 0.000 NA   NA
 3458391 3458392 AM1_0201 AM1_0202     TRUE 0.436 29.000 0.000 NA   NA
 3458392 3458393 AM1_0202 AM1_0203     FALSE 0.418 34.000 0.000 NA   NA
 3458393 3458394 AM1_0203 AM1_0204     TRUE 0.449 65.000 0.000 1.000   NA
 3458394 3458395 AM1_0204 AM1_0205     TRUE 0.454 63.000 0.000 1.000   NA
 3458395 3458396 AM1_0205 AM1_0206     FALSE 0.045 433.000 0.000 NA   NA
 3458397 3458398 AM1_0207 AM1_0209     FALSE 0.036 569.000 0.000 NA   NA
 3458399 3458400 AM1_0208 AM1_0210     FALSE 0.034 607.000 0.000 NA   NA
 3458401 3458402 AM1_0211 AM1_0212     FALSE 0.226 83.000 0.000 NA N NA
 3458402 3458403 AM1_0212 AM1_0213   narK TRUE 0.652 8.000 0.000 1.000   NA
 3458403 3458404 AM1_0213 AM1_0214 narK   TRUE 0.827 106.000 0.029 0.027   NA
 3458406 3458407 AM1_0216 AM1_0217     FALSE 0.231 105.000 0.000 NA   NA
 3458409 3458410 AM1_0219 AM1_0220     FALSE 0.129 194.000 0.000 NA   NA
 3458411 3458412 AM1_0221 AM1_0222     FALSE 0.046 429.000 0.000 NA   NA
 3458412 3458413 AM1_0222 AM1_0223     FALSE 0.039 509.000 0.000 NA   NA
 3458413 3458414 AM1_0223 AM1_0224     FALSE 0.217 131.000 0.000 1.000 N NA
 3458414 3458415 AM1_0224 AM1_0225     FALSE 0.050 388.000 0.000 NA   NA
 3458415 3458416 AM1_0225 AM1_0226     FALSE 0.036 557.000 0.000 NA   NA
 3458417 3458418 AM1_0227 AM1_0228     FALSE 0.103 220.000 0.000 NA   NA
 3458425 3458426 AM1_0235 AM1_0236     TRUE 0.465 -10.000 0.000 NA   NA
 3458426 3458427 AM1_0236 AM1_0237     FALSE 0.242 99.000 0.000 NA   NA
 3458427 3458428 AM1_0237 AM1_0238     TRUE 0.482 19.000 0.000 NA   NA
 3458428 3458429 AM1_0238 AM1_0239     FALSE 0.126 196.000 0.000 NA   NA
 3458430 3458431 AM1_0240 AM1_0241     FALSE 0.092 238.000 0.000 NA   NA
 3458434 3458435 AM1_0244 AM1_0245     FALSE 0.307 80.000 0.000 NA   NA
 3458435 3458436 AM1_0245 AM1_0246     TRUE 0.465 -10.000 0.000 NA   NA
 3458437 3458438 AM1_0247 AM1_0248     FALSE 0.195 134.000 0.000 NA   NA
 3458441 3458442 AM1_0251 AM1_0252     FALSE 0.047 422.000 0.000 NA   NA
 3458443 3458444 AM1_0253 AM1_0254     FALSE 0.049 402.000 0.000 NA   NA
 3458444 3458445 AM1_0254 AM1_0255     TRUE 0.430 31.000 0.000 NA   NA
 3458445 3458446 AM1_0255 AM1_0256     FALSE 0.424 72.000 0.000 1.000   NA
 3458447 3458448 AM1_0257 AM1_0258     TRUE 0.655 4.000 0.000 1.000   NA
 3458448 3458449 AM1_0258 AM1_0259     FALSE 0.257 139.000 0.000 1.000   NA
 3458449 3458450 AM1_0259 AM1_0260     TRUE 0.457 62.000 0.000 1.000   NA
 3458450 3458451 AM1_0260 AM1_0261     TRUE 0.545 -48.000 0.000 0.044   NA
 3458451 3458452 AM1_0261 AM1_0262     FALSE 0.085 333.000 0.000 1.000   NA
 3458452 3458453 AM1_0262 AM1_0263     FALSE 0.206 172.000 0.000 1.000   NA
 3458453 3458454 AM1_0263 AM1_0264     TRUE 0.562 7.000 0.000 NA   NA
 3458454 3458455 AM1_0264 AM1_0265     TRUE 0.538 13.000 0.000 NA   NA
 3458455 3458456 AM1_0265 AM1_0266     TRUE 0.558 10.000 0.000 NA   NA
 3458456 3458457 AM1_0266 AM1_0267     TRUE 0.554 11.000 0.000 NA   NA
 3458457 3458458 AM1_0267 AM1_0268     TRUE 0.850 21.000 0.000 1.000 Y NA
 3458458 3458459 AM1_0268 AM1_0269     TRUE 0.465 -10.000 0.000 NA   NA
 3458460 3458461 AM1_0270 AM1_0271     FALSE 0.404 41.000 0.000 NA   NA
 3458461 3458462 AM1_0271 AM1_0272     TRUE 0.825 120.000 1.000 NA   NA
 3458462 3458463 AM1_0272 AM1_0273     TRUE 0.928 68.000 0.667 0.002   NA
 3458463 3458464 AM1_0273 AM1_0274     TRUE 0.862 126.000 0.667 0.002   NA
 3458464 3458465 AM1_0274 AM1_0275     TRUE 0.953 2.000 0.300 NA   NA
 3458465 3458466 AM1_0275 AM1_0276     TRUE 0.917 42.000 0.400 NA   NA
 3458466 3458467 AM1_0276 AM1_0277     FALSE 0.170 155.000 0.000 NA   NA
 3458469 3458470 AM1_0279 AM1_0280     FALSE 0.209 123.000 0.000 NA   NA
 3458472 3458473 AM1_0282 AM1_0283     FALSE 0.038 527.000 0.000 NA   NA
 3458474 3458475 AM1_0284 AM1_0285 priA   TRUE 0.510 19.000 0.000 1.000 N NA
 3458475 3458476 AM1_0285 AM1_0286     TRUE 0.832 51.000 0.000 0.036 Y NA
 3458476 3458477 AM1_0286 AM1_0287     FALSE 0.412 226.000 0.000 1.000 Y NA
 3458478 3458479 AM1_0288 AM1_0289     FALSE 0.372 59.000 0.000 NA   NA
 3458479 3458480 AM1_0289 AM1_0290     FALSE 0.117 204.000 0.000 NA   NA
 3458480 3458481 AM1_0290 AM1_0291     TRUE 0.519 -3.000 0.000 NA   NA
 3458481 3458482 AM1_0291 AM1_0292     FALSE 0.124 198.000 0.000 NA   NA
 3458482 3458483 AM1_0292 AM1_0294     FALSE 0.288 86.000 0.000 NA   NA
 3458483 3458484 AM1_0294 AM1_0295     TRUE 0.562 7.000 0.000 NA   NA
 3458484 3458485 AM1_0295 AM1_0296     FALSE 0.418 34.000 0.000 NA   NA
 3458485 3458486 AM1_0296 AM1_0298     TRUE 0.564 6.000 0.000 NA   NA
 3458486 3458487 AM1_0298 AM1_0299     FALSE 0.381 54.000 0.000 NA   NA
 3458487 3458488 AM1_0299 AM1_0300     TRUE 0.565 5.000 0.000 NA   NA
 3458488 3458489 AM1_0300 AM1_0301     TRUE 0.439 28.000 0.000 NA   NA
 3458489 3458490 AM1_0301 AM1_0302     TRUE 0.562 7.000 0.000 NA   NA
 3458490 3458491 AM1_0302 AM1_0303     TRUE 0.562 7.000 0.000 NA   NA
 3458491 3458492 AM1_0303 AM1_0304     TRUE 0.547 12.000 0.000 NA   NA
 3458492 3458493 AM1_0304 AM1_0305     FALSE 0.376 57.000 0.000 NA   NA
 3458493 3458494 AM1_0305 AM1_0306     FALSE 0.301 82.000 0.000 NA   NA
 3458494 3458495 AM1_0306 AM1_0307     FALSE 0.409 38.000 0.000 NA   NA
 3458495 3458496 AM1_0307 AM1_0308     TRUE 0.565 5.000 0.000 NA   NA
 3458496 3458497 AM1_0308 AM1_0309     TRUE 0.564 6.000 0.000 NA   NA
 3458499 3458500 AM1_0312 AM1_0313     FALSE 0.066 302.000 0.000 NA   NA
 3458500 3458501 AM1_0313 AM1_0314   pheT FALSE 0.089 244.000 0.000 NA   NA
 3458501 3458502 AM1_0314 AM1_0315 pheT   FALSE 0.409 38.000 0.000 NA   NA
 3458502 3458503 AM1_0315 AM1_0316     FALSE 0.245 98.000 0.000 NA   NA
 3458503 3458504 AM1_0316 AM1_0318     FALSE 0.135 187.000 0.000 NA   NA
 3458504 3458505 AM1_0318 AM1_0319     FALSE 0.355 66.000 0.000 NA   NA
 3458505 3458506 AM1_0319 AM1_0320     FALSE 0.177 150.000 0.000 NA   NA
 3458506 3458508 AM1_0320 AM1_0321     TRUE 0.565 5.000 0.000 NA   NA
 3458508 3458509 AM1_0321 AM1_0322     FALSE 0.245 98.000 0.000 NA   NA
 3458509 3458510 AM1_0322 AM1_0323     FALSE 0.227 107.000 0.000 NA   NA
 3458512 3458513 AM1_0325 AM1_0326     FALSE 0.396 48.000 0.000 NA   NA
 3458513 3458514 AM1_0326 AM1_0327     FALSE 0.093 235.000 0.000 NA   NA
 3458514 3458516 AM1_0327 AM1_0328     FALSE 0.186 143.000 0.000 NA   NA
 3458516 3458517 AM1_0328 AM1_0329     FALSE 0.407 39.000 0.000 NA   NA
 3458517 3458518 AM1_0329 AM1_0330     FALSE 0.055 358.000 0.000 NA   NA
 3458520 3458521 AM1_0332 AM1_0333   thiF TRUE 0.481 -7.000 0.000 NA   NA
 3458521 3458522 AM1_0333 AM1_0334 thiF   FALSE 0.169 156.000 0.000 NA   NA
 3458523 3458524 AM1_0335 AM1_0336 ppk2 glnN FALSE 0.252 142.000 0.000 1.000   NA
 3458524 3458525 AM1_0336 AM1_0337 glnN   FALSE 0.195 134.000 0.000 NA   NA
 3458527 3458528 AM1_0338 AM1_0340     FALSE 0.038 525.000 0.000 NA   NA
 3458529 3458530 AM1_0341 AM1_0342     FALSE 0.335 72.000 0.000 NA   NA
 3458530 3458531 AM1_0342 AM1_0343     TRUE 0.565 5.000 0.000 NA   NA
 3458531 3458532 AM1_0343 AM1_0344     FALSE 0.370 60.000 0.000 NA   NA
 3458532 3458533 AM1_0344 AM1_0345     TRUE 0.429 71.000 0.000 1.000   NA
 3458533 3458534 AM1_0345 AM1_0346     FALSE 0.063 319.000 0.000 NA   NA
 3458535 3458536 AM1_0347 AM1_0348     FALSE 0.206 125.000 0.000 NA   NA
 3458536 3458537 AM1_0348 AM1_0349     FALSE 0.196 133.000 0.000 NA   NA
 3458537 3458538 AM1_0349 AM1_0350   cysH TRUE 0.955 -18.000 0.003 1.000 Y NA
 3458542 3458543 AM1_0353 AM1_0355     TRUE 0.561 8.000 0.000 NA   NA
 3458543 3458544 AM1_0355 AM1_0356     FALSE 0.227 107.000 0.000 NA   NA
 3458544 3458545 AM1_0356 AM1_0357     FALSE 0.097 230.000 0.000 NA   NA
 3458546 3458547 AM1_0358 AM1_0359     FALSE 0.208 124.000 0.000 NA   NA
 3458548 3458549 AM1_0360 AM1_0361     FALSE 0.045 316.000 0.000 NA N NA
 3458549 3458550 AM1_0361 AM1_0362   dinF FALSE 0.025 571.000 0.000 NA N NA
 3458550 3458551 AM1_0362 AM1_0363 dinF   FALSE 0.403 -28.000 0.000 NA   NA
 3458553 3458554 AM1_0365 AM1_0366     FALSE 0.080 351.000 0.000 1.000   NA
 3458554 3458555 AM1_0366 AM1_0367     FALSE 0.360 127.000 0.000 0.016   NA
 3458555 3458556 AM1_0367 AM1_0368     TRUE 0.495 17.000 0.000 NA   NA
 3458556 3458557 AM1_0368 AM1_0369     FALSE 0.029 1100.000 0.000 NA   NA
 3458557 3458558 AM1_0369 AM1_0371     FALSE 0.081 258.000 0.000 NA   NA
 3458558 3458559 AM1_0371 AM1_0372     FALSE 0.043 456.000 0.000 NA   NA
 3458561 3458562 AM1_0373 AM1_0375     FALSE 0.267 92.000 0.000 NA   NA
 3458562 3458563 AM1_0375 AM1_0376     FALSE 0.044 449.000 0.000 NA   NA
 3458563 3458564 AM1_0376 AM1_0377     FALSE 0.030 935.000 0.000 NA   NA
 3458564 3458565 AM1_0377 AM1_0378     TRUE 0.495 43.000 0.000 1.000   NA
 3458565 3458566 AM1_0378 AM1_0379     TRUE 0.484 -36.000 0.000 1.000   NA
 3458566 3458567 AM1_0379 AM1_0380     TRUE 0.908 1.000 0.000 0.023 Y NA
 3458567 3458568 AM1_0380 AM1_0381     TRUE 0.475 20.000 0.000 NA   NA
 3458568 3458569 AM1_0381 AM1_0382     FALSE 0.209 123.000 0.000 NA   NA
 3458569 3458570 AM1_0382 AM1_0383     TRUE 0.562 7.000 0.000 NA   NA
 3458570 3458571 AM1_0383 AM1_0384     TRUE 0.495 17.000 0.000 NA   NA
 3458571 3458572 AM1_0384 AM1_0385     FALSE 0.404 41.000 0.000 NA   NA
 3458572 3458573 AM1_0385 AM1_0386     FALSE 0.211 122.000 0.000 NA   NA
 3458573 3458574 AM1_0386 AM1_0387     FALSE 0.182 158.000 0.000 1.000 N NA
 3458574 3458575 AM1_0387 AM1_0388     FALSE 0.036 562.000 0.000 NA   NA
 3458575 3458576 AM1_0388 AM1_0389     FALSE 0.389 51.000 0.000 NA   NA
 3458576 3458577 AM1_0389 AM1_0390     FALSE 0.301 82.000 0.000 NA   NA
 3458577 3458578 AM1_0390 AM1_0391     FALSE 0.120 201.000 0.000 NA   NA
 3458579 3458580 AM1_0392 AM1_0393     FALSE 0.045 433.000 0.000 NA   NA
 3458580 3458581 AM1_0393 AM1_0394     FALSE 0.058 377.000 0.000 1.000 N NA
 3458582 3458583 AM1_0395 AM1_0396     FALSE 0.187 142.000 0.000 NA   NA
 3458583 3458584 AM1_0396 AM1_0397     TRUE 0.519 -3.000 0.000 NA   NA
 3458585 3458586 AM1_0398 AM1_0399     FALSE 0.342 70.000 0.000 NA   NA
 3458586 3458587 AM1_0399 AM1_0400     FALSE 0.074 276.000 0.000 NA   NA
 3458588 3458589 AM1_0401 AM1_0402   clpB FALSE 0.290 92.000 0.000 1.000 N NA
 3458589 3458590 AM1_0402 AM1_0403 clpB rfbC FALSE 0.181 159.000 0.000 1.000 N NA
 3458590 3458591 AM1_0403 AM1_0404 rfbC rfbA TRUE 0.874 -3.000 0.000 1.000 Y NA
 3458591 3458592 AM1_0404 AM1_0405 rfbA rfbB TRUE 0.944 90.000 0.077 0.005 Y NA
 3458592 3458593 AM1_0405 AM1_0406 rfbB cysC TRUE 0.429 43.000 0.000 1.000 N NA
 3458593 3458594 AM1_0406 AM1_0407 cysC   TRUE 0.545 15.000 0.000 1.000 N NA
 3458594 3458595 AM1_0407 AM1_0408     FALSE 0.118 216.000 0.000 1.000 N NA
 3458596 3458597 AM1_0409 AM1_0410 pyrE   FALSE 0.404 41.000 0.000 NA   NA
 3458597 3458598 AM1_0410 AM1_0411     FALSE 0.361 -58.000 0.000 NA   NA
 3458598 3458599 AM1_0411 AM1_0412   lysA FALSE 0.167 171.000 0.000 1.000 N NA
 3458599 3458600 AM1_0412 AM1_0413 lysA   TRUE 0.778 113.000 0.040 NA   NA
 3458600 3458601 AM1_0413 AM1_0414   uppS TRUE 0.931 -3.000 0.043 NA   NA
 3458602 3458603 AM1_0415 AM1_0416     TRUE 0.448 338.000 0.051 NA   NA
 3458603 3458604 AM1_0416 AM1_0417   pilC TRUE 0.661 185.000 0.010 1.000   NA
 3458604 3458605 AM1_0417 AM1_0418 pilC pilT TRUE 0.961 58.000 0.218 1.000 Y NA
 3458605 3458606 AM1_0418 AM1_0419 pilT pilB TRUE 0.955 79.000 0.178 0.026 Y NA
 3458606 3458607 AM1_0419 AM1_0420 pilB   TRUE 0.475 20.000 0.000 NA   NA
 3458608 3458609 AM1_0421 AM1_0422 grpE dnaK TRUE 0.904 164.000 0.224 0.008 Y NA
 3458609 3458610 AM1_0422 AM1_0423 dnaK dnaJ TRUE 0.969 50.000 0.196 0.005 Y NA
 3458610 3458611 AM1_0423 AM1_0424 dnaJ   TRUE 0.970 21.000 0.067 1.000 Y NA
 3458611 3458612 AM1_0424 AM1_0425   rsgA TRUE 0.942 -3.000 0.058 1.000   NA
 3458614 3458615 AM1_0427 AM1_0428     FALSE 0.122 199.000 0.000 NA   NA
 3458618 3458619 AM1_0431 AM1_0432     TRUE 0.913 45.000 0.250 NA   NA
 3458620 3458621 AM1_6413 AM1_0433 ffs   FALSE 0.095 232.000 0.000 NA   NA
 3458623 3458624 AM1_0435 AM1_0436     FALSE 0.400 -30.000 0.000 NA   NA
 3458626 3458627 AM1_0438 AM1_0439   pflB FALSE 0.037 544.000 0.000 NA   NA
 3458627 3458628 AM1_0439 AM1_0440 pflB ppsA FALSE 0.368 70.000 0.000 1.000 N NA
 3458628 3458629 AM1_0440 AM1_0441 ppsA pflA FALSE 0.389 63.000 0.000 1.000 N NA
 3458629 3458630 AM1_0441 AM1_0442 pflA   TRUE 0.429 43.000 0.000 1.000 N NA
 3458630 3458631 AM1_0442 AM1_0443   xfp FALSE 0.325 82.000 0.000 1.000 N NA
 3458631 3458632 AM1_0443 AM1_0444 xfp   TRUE 0.450 -118.000 0.000 1.000   NA
 3458632 3458633 AM1_0444 AM1_0445   ackA TRUE 0.480 52.000 0.000 1.000   NA
 3458634 3458635 AM1_0446 AM1_0447     TRUE 0.562 7.000 0.000 NA   NA
 3458635 3458636 AM1_0447 AM1_0448   psbA FALSE 0.071 282.000 0.000 NA   NA
 3458636 3458637 AM1_0448 AM1_0449 psbA   FALSE 0.415 35.000 0.000 NA   NA
 3458637 3458638 AM1_0449 AM1_0450     FALSE 0.230 82.000 0.000 NA N NA
 3458638 3458639 AM1_0450 AM1_0451     TRUE 0.430 31.000 0.000 NA   NA
 3458640 3458641 AM1_0452 AM1_0453 sqr   TRUE 0.433 30.000 0.000 NA   NA
 3458641 3458642 AM1_0453 AM1_0454     FALSE 0.173 153.000 0.000 NA   NA
 3458642 3458643 AM1_0454 AM1_0455     FALSE 0.072 280.000 0.000 NA   NA
 3458643 3458644 AM1_0455 AM1_0456     FALSE 0.396 48.000 0.000 NA   NA
 3458644 3458645 AM1_0456 AM1_0457   nrdG TRUE 0.484 50.000 0.000 1.000   NA
 3458645 3458646 AM1_0457 AM1_0458 nrdG   FALSE 0.297 83.000 0.000 NA   NA
 3458646 3458647 AM1_0458 AM1_0459     FALSE 0.204 127.000 0.000 NA   NA
 3458647 3458648 AM1_0459 AM1_0460     TRUE 0.572 49.000 0.000 0.045   NA
 3458648 3458649 AM1_0460 AM1_0461     FALSE 0.045 435.000 0.000 NA   NA
 3458649 3458650 AM1_0461 AM1_0462     FALSE 0.368 61.000 0.000 NA   NA
 3458650 3458651 AM1_0462 AM1_0463     FALSE 0.087 264.000 0.000 1.000 N NA
 3458651 3458652 AM1_0463 AM1_0464     FALSE 0.235 103.000 0.000 NA   NA
 3458654 3458655 AM1_0466 AM1_0467   hemN TRUE 0.834 98.000 0.161 1.000 N NA
 3458655 3458656 AM1_0467 AM1_0468 hemN   FALSE 0.356 90.000 0.000 1.000   NA
 3458656 3458657 AM1_0468 AM1_0469     FALSE 0.073 384.000 0.000 1.000   NA
 3458660 3458661 AM1_0472 AM1_0473   feoB TRUE 0.892 37.000 0.030 NA   NA
 3458661 3458662 AM1_0473 AM1_0474 feoB feoA TRUE 0.980 3.000 0.122 1.000 Y NA
 3458665 3458666 AM1_0478 AM1_0479     FALSE 0.231 105.000 0.000 NA   NA
 3458668 3458669 AM1_0481 AM1_0482     TRUE 0.536 70.000 0.000 0.012   NA
 3458669 3458670 AM1_0482 AM1_0483     FALSE 0.302 106.000 0.000 1.000   NA
 3458670 3458671 AM1_0483 AM1_0484     FALSE 0.279 123.000 0.000 1.000   NA
 3458672 10702623 AM1_0485 AM1_0486     TRUE 0.556 1.000 0.000 NA   NA
 3458675 3458676 AM1_0489 AM1_0490     FALSE 0.343 93.000 0.000 1.000   NA
 3458678 3458679 AM1_0492 AM1_0494     TRUE 0.456 24.000 0.000 NA   NA
 3458680 3458681 AM1_0493 AM1_0495     FALSE 0.400 44.000 0.000 NA   NA
 3458683 3458684 AM1_0497 AM1_0498     FALSE 0.105 218.000 0.000 NA   NA
 3458684 3458685 AM1_0498 AM1_0499     TRUE 0.446 -172.000 0.000 1.000   NA
 3458685 3458686 AM1_0499 AM1_0500     FALSE 0.067 422.000 0.000 1.000   NA
 3458686 3458687 AM1_0500 AM1_0501     FALSE 0.343 93.000 0.000 1.000   NA
 3458687 3458688 AM1_0501 AM1_0502     FALSE 0.109 214.000 0.000 NA   NA
 3458688 3458689 AM1_0502 AM1_0503     FALSE 0.052 370.000 0.000 NA   NA
 3458691 10702624 AM1_0504 AM1_0506     FALSE 0.102 222.000 0.000 NA   NA
 3458695 3458696 AM1_0510 AM1_0511   sodN TRUE 0.477 53.000 0.000 1.000   NA
 3458696 3458697 AM1_0511 AM1_0512 sodN   TRUE 0.457 62.000 0.000 1.000   NA
 3458698 3458699 AM1_0513 AM1_0514   moeB TRUE 0.907 36.000 0.093 NA   NA
 3458700 3458701 AM1_0515 AM1_0516     TRUE 0.984 0.000 0.600 0.041 Y NA
 3458701 3458702 AM1_0516 AM1_0517     FALSE 0.037 533.000 0.000 NA   NA
 3458703 3458704 AM1_0518 AM1_0519   phyH TRUE 0.519 -3.000 0.000 NA   NA
 3458704 3458705 AM1_0519 AM1_0520 phyH   TRUE 0.465 22.000 0.000 NA   NA
 3458705 3458706 AM1_0520 AM1_0521     FALSE 0.381 54.000 0.000 NA   NA
 3458708 3458709 AM1_0523 AM1_0524     TRUE 0.453 32.000 0.000 1.000 N NA
 3458710 3458711 AM1_0525 AM1_0526 fliA psbO FALSE 0.066 430.000 0.000 1.000   NA
 3458713 3458714 AM1_0528 AM1_0529   pgsA FALSE 0.036 557.000 0.000 NA   NA
 3458714 3458715 AM1_0529 AM1_0530 pgsA   TRUE 0.562 7.000 0.000 NA   NA
 3458716 3458717 AM1_0531 AM1_0532     TRUE 0.909 26.000 0.041 NA   NA
 3458718 3458719 AM1_0533 AM1_0534 chlD   FALSE 0.223 110.000 0.000 NA   NA
 3458721 3458722 AM1_0536 AM1_0538     TRUE 0.564 4.000 0.000 NA   NA
 3458722 3458723 AM1_0538 AM1_0539     FALSE 0.041 486.000 0.000 NA   NA
 3458723 3458724 AM1_0539 AM1_0540     FALSE 0.098 228.000 0.000 NA   NA
 3458724 3458725 AM1_0540 AM1_0541     FALSE 0.162 161.000 0.000 NA   NA
 3458725 3458726 AM1_0541 AM1_0542     FALSE 0.394 49.000 0.000 NA   NA
 3458726 3458727 AM1_0542 AM1_0543     TRUE 0.519 -3.000 0.000 NA   NA
 3458727 3458728 AM1_0543 AM1_0544     FALSE 0.248 97.000 0.000 NA   NA
 3458728 3458729 AM1_0544 AM1_0545     FALSE 0.033 654.000 0.000 NA   NA
 3458731 3458732 AM1_0547 AM1_0548     TRUE 0.906 12.000 0.000 0.014 Y NA
 3458732 3458733 AM1_0548 AM1_0549   hemL FALSE 0.037 622.000 0.000 1.000 N NA
 3458733 3458734 AM1_0549 AM1_0550 hemL   FALSE 0.087 264.000 0.000 1.000 N NA
 3458734 3458735 AM1_0550 AM1_0551     TRUE 0.547 12.000 0.000 NA   NA
 3458741 3458742 AM1_0557 AM1_0558     FALSE 0.181 147.000 0.000 NA   NA
 3458743 3458744 AM1_0559 AM1_0560 ppx   FALSE 0.057 259.000 0.000 NA N NA
 3458744 3458745 AM1_0560 AM1_0561     FALSE 0.238 101.000 0.000 NA   NA
 3458745 3458746 AM1_0561 AM1_0563   dxr FALSE 0.297 83.000 0.000 NA   NA
 3458747 3458748 AM1_0562 AM1_0564     FALSE 0.050 605.000 0.000 1.000   NA
 3458748 3458749 AM1_0564 AM1_0565     FALSE 0.043 516.000 0.000 1.000 N NA
 3458755 3458756 AM1_0571 AM1_0572     FALSE 0.085 251.000 0.000 NA   NA
 3458758 3458759 AM1_0574 AM1_0575     TRUE 0.487 49.000 0.000 1.000   NA
 3458759 3458760 AM1_0575 AM1_0576     TRUE 0.612 -3.000 0.000 1.000   NA
 3458760 3458761 AM1_0576 AM1_0577     TRUE 0.556 1.000 0.000 NA   NA
 3458762 3458763 AM1_0578 AM1_0579     FALSE 0.052 379.000 0.000 NA   NA
 3458766 3458767 AM1_0581 AM1_0583 lpxB lpxA TRUE 0.979 7.000 0.062 1.000 Y NA
 3458769 3458770 AM1_0584 AM1_0586 fabZ lpxC TRUE 0.912 33.000 0.083 1.000 N NA
 3458770 3458771 AM1_0586 AM1_0587 lpxC   TRUE 0.903 124.000 0.052 1.000 Y NA
 3458771 3458772 AM1_0587 AM1_0588   purC TRUE 0.860 79.000 0.058 1.000 N NA
 3458772 3458773 AM1_0588 AM1_0589 purC   FALSE 0.217 116.000 0.000 NA   NA
 3458773 3458774 AM1_0589 AM1_0590     TRUE 0.447 26.000 0.000 NA   NA
 3458775 3458776 AM1_0591 AM1_0592     FALSE 0.186 143.000 0.000 NA   NA
 3458777 3458778 AM1_0593 AM1_0594   arsC FALSE 0.102 237.000 0.000 1.000 N NA
 3458778 3458779 AM1_0594 AM1_0595 arsC acr3 TRUE 0.935 20.000 0.214 1.000 N NA
 3458779 3458780 AM1_0595 AM1_0596 acr3   FALSE 0.394 61.000 0.000 1.000 N NA
 3458780 3458781 AM1_0596 AM1_0597     FALSE 0.137 185.000 0.000 NA   NA
 3458782 3458783 AM1_0598 AM1_0599 glyS   TRUE 0.517 33.000 0.000 1.000   NA
 3458785 3458786 AM1_0601 AM1_0602   murI FALSE 0.043 508.000 0.000 1.000 N NA
 3458786 3458787 AM1_0602 AM1_0603 murI   FALSE 0.135 199.000 0.000 1.000 N NA
 3458787 3458788 AM1_0603 AM1_0604   thiL TRUE 0.872 66.000 0.031 1.000 N NA
 3458788 3458789 AM1_0604 AM1_0605 thiL   FALSE 0.358 65.000 0.000 NA   NA
 3458789 3458790 AM1_0605 AM1_0606     FALSE 0.103 221.000 0.000 NA   NA
 3458791 3458792 AM1_0607 AM1_0608   ribAB FALSE 0.091 311.000 0.000 1.000   NA
 3458793 3458794 AM1_0609 AM1_0610 argC   FALSE 0.394 49.000 0.000 NA   NA
 3458796 3458797 AM1_0612 AM1_0613   psbP FALSE 0.222 111.000 0.000 NA   NA
 3458797 3458798 AM1_0613 AM1_0614 psbP   FALSE 0.252 96.000 0.000 NA   NA
 3458798 3458799 AM1_0614 AM1_0615   hemF FALSE 0.219 114.000 0.000 NA   NA
 3458801 3458802 AM1_0617 AM1_0618 mtaP   TRUE 0.564 4.000 0.000 NA   NA
 3458805 3458806 AM1_0621 AM1_0622     FALSE 0.177 150.000 0.000 NA   NA
 3458808 3458809 AM1_0624 AM1_0625   birA TRUE 0.595 216.000 0.030 1.000 N NA
 3458810 3458811 AM1_0626 AM1_0627     FALSE 0.414 -24.000 0.000 NA   NA
 3458811 3458812 AM1_0627 AM1_0628     FALSE 0.199 131.000 0.000 NA   NA
 3458813 3458814 AM1_0629 AM1_0630     TRUE 0.561 8.000 0.000 NA   NA
 3458814 3458815 AM1_0630 AM1_0631     TRUE 0.559 2.000 0.000 NA   NA
 3458815 3458816 AM1_0631 AM1_0632     TRUE 0.559 2.000 0.000 NA   NA
 3458817 3458818 AM1_0633 AM1_0634     FALSE 0.054 362.000 0.000 NA   NA
 3458818 3458819 AM1_0634 AM1_0635     TRUE 0.612 -28.000 0.000 0.002   NA
 3458822 3458823 AM1_0638 AM1_0639     TRUE 0.519 -3.000 0.000 NA   NA
 3458823 3458824 AM1_0639 AM1_0640     FALSE 0.217 116.000 0.000 NA   NA
 3458824 3458825 AM1_0640 AM1_0641     TRUE 0.461 23.000 0.000 NA   NA
 3458825 3458826 AM1_0641 AM1_0642   hisS TRUE 0.754 117.000 0.018 NA   NA
 3458829 3458830 AM1_0645 AM1_0646     FALSE 0.129 193.000 0.000 NA   NA
 3458830 3458831 AM1_0646 AM1_0647     TRUE 0.958 3.000 0.185 0.097 N NA
 3458831 3458832 AM1_0647 AM1_0648     TRUE 0.867 16.000 0.000 1.000 Y NA
 3458832 3458833 AM1_0648 AM1_0649     FALSE 0.344 76.000 0.000 1.000 N NA
 3458833 3458834 AM1_0649 AM1_0650     FALSE 0.053 367.000 0.000 NA   NA
 3458834 3458835 AM1_0650 AM1_0651     FALSE 0.297 83.000 0.000 NA   NA
 3458835 3458836 AM1_0651 AM1_0652   plsX FALSE 0.069 291.000 0.000 NA   NA
 3458836 3458837 AM1_0652 AM1_0653 plsX   TRUE 0.986 3.000 0.380 0.003 Y NA
 3458837 3458838 AM1_0653 AM1_0654     TRUE 0.647 1.000 0.000 1.000   NA
 3458839 3458840 AM1_0655 AM1_0656 ccmK ccmK TRUE 0.961 57.000 0.938 NA Y NA
 3458840 3458841 AM1_0656 AM1_0657 ccmK   FALSE 0.047 417.000 0.000 NA   NA
 3458843 3458844 AM1_0659 AM1_0660     TRUE 0.481 -7.000 0.000 NA   NA
 3458844 3458845 AM1_0660 AM1_0661     FALSE 0.231 105.000 0.000 NA   NA
 3458847 3458848 AM1_0662 AM1_0664     FALSE 0.402 42.000 0.000 NA   NA
 3458849 3458850 AM1_0665 AM1_0666     TRUE 0.519 -3.000 0.000 NA   NA
 3458850 3458851 AM1_0666 AM1_0667     FALSE 0.212 168.000 0.000 1.000   NA
 3458851 3458852 AM1_0667 AM1_0668     TRUE 0.551 24.000 0.000 1.000   NA
 3458858 3458859 AM1_0674 AM1_0675     TRUE 0.955 3.000 0.500 NA   NA
 3458859 3458860 AM1_0675 AM1_0676     FALSE 0.132 191.000 0.000 NA   NA
 3458861 3458862 AM1_0677 AM1_0678     FALSE 0.293 58.000 0.000 NA N NA
 3458862 3458863 AM1_0678 AM1_0679     TRUE 0.977 -3.000 0.122 1.000 Y NA
 3458865 3458866 AM1_0680 AM1_0682     FALSE 0.335 72.000 0.000 NA   NA
 3458866 3458867 AM1_0682 AM1_0683     FALSE 0.194 135.000 0.000 NA   NA
 3458867 10702625 AM1_0683 AM1_0684     TRUE 0.565 5.000 0.000 NA   NA
 3458868 3458869 AM1_0685 AM1_0686     TRUE 0.877 72.000 0.107 NA   NA
 3458869 3458870 AM1_0686 AM1_0687     FALSE 0.130 192.000 0.000 NA   NA
 3458870 3458871 AM1_0687 AM1_0688     TRUE 0.955 1.000 0.571 NA   NA
 3458872 3458873 AM1_0689 AM1_0690     FALSE 0.152 171.000 0.000 NA   NA
 3458877 3458878 AM1_0694 AM1_0695 secF secD TRUE 0.983 -3.000 0.516 0.001 Y NA
 3458878 3458879 AM1_0695 AM1_0696 secD pdhB TRUE 0.911 35.000 0.091 1.000 N NA
 3458879 3458880 AM1_0696 AM1_0697 pdhB phrB FALSE 0.249 106.000 0.000 1.000 N NA
 3458881 3458882 AM1_0698 AM1_0699     TRUE 0.519 -3.000 0.000 NA   NA
 3458882 3458883 AM1_0699 AM1_0700     TRUE 0.645 11.000 0.000 1.000   NA
 3458884 3458885 AM1_0701 AM1_0702   cyaA FALSE 0.225 108.000 0.000 NA   NA
 3458886 3458887 AM1_0703 AM1_0704     FALSE 0.054 360.000 0.000 NA   NA
 3458887 3458888 AM1_0704 AM1_0705   leuA TRUE 0.745 119.000 0.011 NA   NA
 3458888 3458889 AM1_0705 AM1_0706 leuA   FALSE 0.313 78.000 0.000 NA   NA
 3458889 3458890 AM1_0706 AM1_0707     FALSE 0.041 487.000 0.000 NA   NA
 3458890 3458891 AM1_0707 AM1_0709     TRUE 0.546 -48.000 0.000 0.042   NA
 3458893 3458894 AM1_0710 AM1_0711     TRUE 0.946 16.000 0.667 NA   NA
 3458894 3458895 AM1_0711 AM1_0712     FALSE 0.293 84.000 0.000 NA   NA
 3458897 3458898 AM1_0714 AM1_0715     FALSE 0.223 160.000 0.000 1.000   NA
 3458898 3458899 AM1_0715 AM1_0716     TRUE 0.565 5.000 0.000 NA   NA
 3458900 3458901 AM1_0717 AM1_0718     TRUE 0.548 0.000 0.000 NA   NA
 3458901 3458902 AM1_0718 AM1_0719     FALSE 0.148 174.000 0.000 NA   NA
 3458903 3458904 AM1_0720 AM1_0721   aspH FALSE 0.350 74.000 0.000 1.000 N NA
 3458904 3458905 AM1_0721 AM1_0722 aspH aspH TRUE 0.791 79.000 0.000 0.001 Y NA
 3458905 3458906 AM1_0722 AM1_0723 aspH aspH TRUE 0.802 74.000 0.000 0.001 Y NA
 3458906 3458907 AM1_0723 AM1_0724 aspH   TRUE 0.557 14.000 0.000 1.000 N NA
 3458907 3458908 AM1_0724 AM1_0725     FALSE 0.076 365.000 0.000 1.000   NA
 3458908 3458909 AM1_0725 AM1_0726     TRUE 0.948 -7.000 0.750 1.000   NA
 3458909 3458910 AM1_0726 AM1_0727     FALSE 0.426 15.000 0.000 NA N NA
 3458910 3458911 AM1_0727 AM1_0728     FALSE 0.380 55.000 0.000 NA   NA
 3458911 3458912 AM1_0728 AM1_0729     TRUE 0.639 0.000 0.000 1.000   NA
 3458912 3458913 AM1_0729 AM1_0730     TRUE 0.577 19.000 0.000 1.000   NA
 3458916 3458917 AM1_0733 AM1_0734     TRUE 0.554 11.000 0.000 NA   NA
 3458917 3458918 AM1_0734 AM1_0735     FALSE 0.407 39.000 0.000 NA   NA
 3458919 3458920 AM1_0736 AM1_0737     FALSE 0.381 54.000 0.000 NA   NA
 3458920 3458921 AM1_0737 AM1_0738     FALSE 0.094 234.000 0.000 NA   NA
 3458922 3458923 AM1_0740 AM1_0741     FALSE 0.389 -37.000 0.000 NA   NA
 3458924 3458925 AM1_0742 AM1_0743   lys FALSE 0.118 161.000 0.000 NA N NA
 3458925 3458926 AM1_0743 AM1_0744 lys dnaE FALSE 0.190 140.000 0.000 NA   NA
 3458926 3458927 AM1_0744 AM1_0745 dnaE   FALSE 0.156 167.000 0.000 NA   NA
 3458927 3458928 AM1_0745 AM1_0746     FALSE 0.238 101.000 0.000 NA   NA
 3458928 3458929 AM1_0746 AM1_0747     FALSE 0.368 61.000 0.000 NA   NA
 3458929 3458930 AM1_0747 AM1_0748     FALSE 0.240 100.000 0.000 NA   NA
 3458930 3458931 AM1_0748 AM1_0749     TRUE 0.797 144.000 0.867 NA   NA
 3458931 3458932 AM1_0749 AM1_0750     TRUE 0.957 3.000 0.867 NA   NA
 3458932 3458933 AM1_0750 AM1_0751     FALSE 0.094 234.000 0.000 NA   NA
 3458935 3458936 AM1_0753 AM1_0754     FALSE 0.074 277.000 0.000 NA   NA
 3458936 3458937 AM1_0754 AM1_0755     TRUE 0.450 -13.000 0.000 NA   NA
 3458941 3458942 AM1_0759 AM1_0760     FALSE 0.087 249.000 0.000 NA   NA
 3458943 3458944 AM1_0761 AM1_0762     TRUE 0.447 26.000 0.000 NA   NA
 3458944 3458945 AM1_0762 AM1_0763     TRUE 0.929 -15.000 0.400 NA   NA
 3458945 3458946 AM1_0763 AM1_0764     TRUE 0.430 31.000 0.000 NA   NA
 3458946 3458947 AM1_0764 AM1_0765     FALSE 0.252 96.000 0.000 NA   NA
 3458948 3458949 AM1_0766 AM1_0767     FALSE 0.113 209.000 0.000 NA   NA
 3458950 3458951 AM1_0768 AM1_0769   purT FALSE 0.046 425.000 0.000 NA   NA
 3458952 3458953 AM1_0770 AM1_0771 lysC   FALSE 0.091 256.000 0.000 1.000 N NA
 3458954 3458955 AM1_0772 AM1_0773   modA TRUE 0.984 4.000 0.103 0.000 Y NA
 3458957 3458958 AM1_0775 AM1_0776     FALSE 0.189 141.000 0.000 NA   NA
 3458958 3458959 AM1_0776 AM1_0777     FALSE 0.059 338.000 0.000 NA   NA
 3458960 3458961 AM1_0778 AM1_0779     FALSE 0.038 523.000 0.000 NA   NA
 3458961 3458962 AM1_0779 AM1_0780     FALSE 0.061 328.000 0.000 NA   NA
 3458962 3458963 AM1_0780 AM1_0781     FALSE 0.234 119.000 0.000 1.000 N NA
 3458963 3458964 AM1_0781 AM1_0782   ppnK TRUE 0.477 65.000 0.000 0.067 N NA
 3458964 3458965 AM1_0782 AM1_0783 ppnK   FALSE 0.304 81.000 0.000 NA   NA
 3458965 3458966 AM1_0783 AM1_0784     TRUE 0.556 1.000 0.000 NA   NA
 3458966 3458967 AM1_0784 AM1_0785     FALSE 0.030 791.000 0.000 NA   NA
 3458967 3458968 AM1_0785 AM1_0786     FALSE 0.068 293.000 0.000 NA   NA
 3458968 3458969 AM1_0786 AM1_0787     FALSE 0.313 78.000 0.000 NA   NA
 3458969 3458970 AM1_0787 AM1_0788   pepE FALSE 0.042 463.000 0.000 NA   NA
 3458970 3458971 AM1_0788 AM1_0789 pepE   FALSE 0.173 197.000 0.000 1.000   NA
 3458972 3458973 AM1_0790 AM1_0791     FALSE 0.334 95.000 0.000 1.000   NA
 3458973 3458974 AM1_0791 AM1_0792     TRUE 0.561 8.000 0.000 NA   NA
 3458974 3458975 AM1_0792 AM1_0793     FALSE 0.407 39.000 0.000 NA   NA
 3458975 3458976 AM1_0793 AM1_0794     TRUE 0.908 -19.000 0.066 NA   NA
 3458976 3458977 AM1_0794 AM1_0795     TRUE 0.556 1.000 0.000 NA   NA
 3458977 3458978 AM1_0795 AM1_0796     FALSE 0.242 99.000 0.000 NA   NA
 3458978 3458979 AM1_0796 AM1_0797     FALSE 0.170 155.000 0.000 NA   NA
 3458980 3458981 AM1_0798 AM1_0799     FALSE 0.138 184.000 0.000 NA   NA
 3458981 3458982 AM1_0799 AM1_0801     TRUE 0.447 26.000 0.000 NA   NA
 3458988 3458989 AM1_0806 AM1_0807 ftsZ prsA TRUE 0.741 113.000 0.002 1.000 N NA
 3458991 3458992 AM1_0809 AM1_0810     FALSE 0.243 110.000 0.000 1.000 N NA
 3458994 3458995 AM1_0812 AM1_0813     FALSE 0.205 126.000 0.000 NA   NA
 3458995 3458996 AM1_0813 AM1_0814     FALSE 0.079 263.000 0.000 NA   NA
 3458997 3458998 AM1_0815 AM1_0816     FALSE 0.108 215.000 0.000 NA   NA
 3458998 3458999 AM1_0816 AM1_0817     FALSE 0.372 -46.000 0.000 NA   NA
 3458999 3459000 AM1_0817 AM1_0818     FALSE 0.048 639.000 0.000 1.000   NA
 3459000 3459001 AM1_0818 AM1_0819     TRUE 0.548 0.000 0.000 NA   NA
 3459001 3459002 AM1_0819 AM1_0820     FALSE 0.031 739.000 0.000 NA   NA
 3459004 3459005 AM1_0822 AM1_0823 grxC   FALSE 0.405 40.000 0.000 NA   NA
 3459006 3459007 AM1_0824 AM1_0825     FALSE 0.392 62.000 0.000 1.000 N NA
 3459007 3459008 AM1_0825 AM1_0826     TRUE 0.559 2.000 0.000 NA   NA
 3459008 3459009 AM1_0826 AM1_0827     FALSE 0.065 305.000 0.000 NA   NA
 3459010 3459011 AM1_0828 AM1_0829     TRUE 0.843 37.000 0.000 0.040 Y NA
 3459011 3459012 AM1_0829 AM1_0830     FALSE 0.228 123.000 0.000 1.000 N NA
 3459013 3459014 AM1_0831 AM1_0832     FALSE 0.032 700.000 0.000 NA   NA
 3459014 3459015 AM1_0832 AM1_0833     TRUE 0.649 10.000 0.000 1.000   NA
 3459015 3459016 AM1_0833 AM1_0834     FALSE 0.204 127.000 0.000 NA   NA
 3459016 3459017 AM1_0834 AM1_0835     FALSE 0.396 48.000 0.000 NA   NA
 3459017 3459018 AM1_0835 AM1_0836     FALSE 0.173 197.000 0.000 1.000   NA
 3459018 3459019 AM1_0836 AM1_0837     FALSE 0.407 39.000 0.000 NA   NA
 3459025 3459026 AM1_0843 AM1_0844     FALSE 0.085 252.000 0.000 NA   NA
 3459027 3459028 AM1_0845 AM1_0846     TRUE 0.943 -3.000 0.211 NA   NA
 3459028 3459029 AM1_0846 AM1_0847     FALSE 0.072 279.000 0.000 NA   NA
 3459029 3459030 AM1_0847 AM1_0848     TRUE 0.924 22.000 0.098 NA   NA
 3459030 3459031 AM1_0848 AM1_0849   mraW TRUE 0.502 238.000 0.004 NA   NA
 3459033 3459034 AM1_0850 AM1_0852     FALSE 0.048 407.000 0.000 NA   NA
 3459036 3459037 AM1_0854 AM1_0855   nagA TRUE 0.590 7.000 0.000 1.000 N NA
 3459037 3459038 AM1_0855 AM1_0856 nagA   TRUE 0.942 11.000 0.056 NA   NA
 3459039 3459040 AM1_0857 AM1_0858 purE alr TRUE 0.467 28.000 0.000 1.000 N NA
 3459041 3459042 AM1_0859 AM1_0860     FALSE 0.116 163.000 0.000 NA N NA
 3459042 3459043 AM1_0860 AM1_0861     TRUE 0.948 -7.000 0.126 0.016   NA
 3459043 3459044 AM1_0861 AM1_0862     TRUE 0.921 -25.000 0.137 1.000   NA
 3459044 3459045 AM1_0862 AM1_0863     TRUE 0.986 10.000 0.888 0.025 Y NA
 3459045 3459046 AM1_0863 AM1_0864     TRUE 0.961 47.000 0.092 1.000 Y NA
 3459047 3459048 AM1_0865 AM1_0866     FALSE 0.030 887.000 0.000 NA   NA
 3459049 3459050 AM1_0867 AM1_0868 ureG ureF TRUE 0.954 90.000 0.550 0.003 Y NA
 3459050 3459051 AM1_0868 AM1_0869 ureF   FALSE 0.043 451.000 0.000 NA   NA
 3459054 3459055 AM1_0873 AM1_0874     TRUE 0.860 -6.000 0.000 1.000 Y NA
 3459057 3459058 AM1_0876 AM1_0877 cysH   FALSE 0.380 55.000 0.000 NA   NA
 3459058 3459059 AM1_0877 AM1_0878     FALSE 0.346 69.000 0.000 NA   NA
 3459059 3459060 AM1_0878 AM1_0879     FALSE 0.177 102.000 0.000 NA N NA
 3459060 3459061 AM1_0879 AM1_0880     TRUE 0.920 -19.000 0.217 NA   NA
 3459062 3459063 AM1_0881 AM1_0882     FALSE 0.219 114.000 0.000 NA   NA
 3459066 3459067 AM1_0885 AM1_0886     FALSE 0.236 102.000 0.000 NA   NA
 3459067 3459068 AM1_0886 AM1_0887     FALSE 0.081 258.000 0.000 NA   NA
 3459069 3459070 AM1_0888 AM1_0889     TRUE 0.430 31.000 0.000 NA   NA
 3459071 3459072 AM1_0890 AM1_0891 atpI atpB TRUE 0.825 107.000 0.099 1.000   NA
 3459072 3459073 AM1_0891 AM1_0892 atpB atpE TRUE 0.932 131.000 0.679 0.004 Y NA
 3459073 3459074 AM1_0892 AM1_0893 atpE   TRUE 0.922 146.000 0.368 0.004 Y NA
 3459074 3459075 AM1_0893 AM1_0894   atpF TRUE 0.976 33.000 0.569 0.001 Y NA
 3459075 3459076 AM1_0894 AM1_0895 atpF atpH TRUE 0.981 -3.000 0.132 0.004 Y NA
 3459076 3459077 AM1_0895 AM1_0896 atpH atpA TRUE 0.964 74.000 0.864 0.004 Y NA
 3459077 3459078 AM1_0896 AM1_0897 atpA atpG TRUE 0.986 10.000 0.846 0.004 Y NA
 3459082 3459083 AM1_0901 AM1_0902     FALSE 0.099 225.000 0.000 NA   NA
 3459083 3459084 AM1_0902 AM1_0903     FALSE 0.290 115.000 0.000 1.000   NA
 3459084 3459085 AM1_0903 AM1_0905     FALSE 0.267 92.000 0.000 NA   NA
 3459087 3459088 AM1_0906 AM1_0907     FALSE 0.034 620.000 0.000 NA   NA
 3459088 3459089 AM1_0907 AM1_0908     FALSE 0.033 644.000 0.000 NA   NA
 3459089 3459090 AM1_0908 AM1_0909     TRUE 0.702 104.000 0.000 0.034 Y NA
 3459090 3459091 AM1_0909 AM1_0910     TRUE 0.893 4.000 0.000 1.000 Y NA
 3459093 3459094 AM1_0912 AM1_0913     TRUE 0.915 150.000 0.231 0.005 Y NA
 3459094 3459095 AM1_0913 AM1_0914     TRUE 0.881 20.000 0.000 0.005 Y NA
 3459096 3459097 AM1_0915 AM1_0916     FALSE 0.125 197.000 0.000 NA   NA
 3459099 3459100 AM1_0918 AM1_0919     TRUE 0.934 13.000 0.033 NA   NA
 3459100 3459101 AM1_0919 AM1_0920   thrC TRUE 0.914 44.000 0.215 1.000 N NA
 3459101 3459102 AM1_0920 AM1_0921 thrC   FALSE 0.274 126.000 0.000 1.000   NA
 3459102 3459103 AM1_0921 AM1_0922     FALSE 0.391 50.000 0.000 NA   NA
 3459103 3459104 AM1_0922 AM1_0923     FALSE 0.316 77.000 0.000 NA   NA
 3459105 3459106 AM1_0924 AM1_0925     FALSE 0.233 104.000 0.000 NA   NA
 3459107 3459108 AM1_0926 AM1_0927 smpB   TRUE 0.447 26.000 0.000 NA   NA
 3459109 3459110 AM1_0928 AM1_0929     FALSE 0.405 40.000 0.000 NA   NA
 3459110 3459111 AM1_0929 AM1_0930     FALSE 0.159 163.000 0.000 NA   NA
 3459111 3459112 AM1_0930 AM1_0931   nusA TRUE 0.906 65.000 0.759 NA   NA
 3459112 3459113 AM1_0931 AM1_0932 nusA infB FALSE 0.415 489.000 0.342 1.000 N NA
 3459113 3459114 AM1_0932 AM1_0933 infB   FALSE 0.086 250.000 0.000 NA   NA
 3459115 3459116 AM1_0934 AM1_0935   cysE TRUE 0.905 28.000 0.070 NA N NA
 3459116 3459117 AM1_0935 AM1_0936 cysE   TRUE 0.918 -18.000 0.167 NA   NA
 3459117 3459118 AM1_0936 AM1_0937     FALSE 0.080 260.000 0.000 NA   NA
 3459119 3459120 AM1_0938 AM1_0939   petL FALSE 0.183 146.000 0.000 NA   NA
 3459120 3459121 AM1_0939 AM1_0940 petL gatB FALSE 0.127 195.000 0.000 NA   NA
 3459121 3459122 AM1_0940 AM1_0941 gatB   FALSE 0.402 42.000 0.000 NA   NA
 3459122 3459123 AM1_0941 AM1_0942     FALSE 0.175 152.000 0.000 NA   NA
 3459125 3459126 AM1_0944 AM1_0945     FALSE 0.387 52.000 0.000 NA   NA
 3459126 3459127 AM1_0945 AM1_0946     TRUE 0.519 -3.000 0.000 NA   NA
 3459127 3459128 AM1_0946 AM1_0947     FALSE 0.410 75.000 0.000 1.000   NA
 3459128 3459129 AM1_0947 AM1_0948     FALSE 0.134 189.000 0.000 NA   NA
 3459133 3459134 AM1_0952 AM1_0953     FALSE 0.263 93.000 0.000 NA   NA
 3459134 3459135 AM1_0953 AM1_0955     FALSE 0.384 53.000 0.000 NA   NA
 3459138 3459139 AM1_0957 AM1_0958     FALSE 0.367 87.000 0.000 1.000   NA
 3459140 3459141 AM1_0959 AM1_0960     FALSE 0.321 83.000 0.000 1.000 N NA
 3459141 3459142 AM1_0960 AM1_0961     FALSE 0.236 102.000 0.000 NA   NA
 3459142 3459143 AM1_0961 AM1_0962     FALSE 0.217 117.000 0.000 NA   NA
 3459144 3459145 AM1_0963 AM1_0964 uppS   TRUE 0.636 190.000 0.003 1.000   NA
 3459146 3459147 AM1_0965 AM1_0966     TRUE 0.648 139.000 0.000 0.033 Y NA
 3459151 3459152 AM1_0970 AM1_0971     FALSE 0.211 122.000 0.000 NA   NA
 3459152 3459153 AM1_0971 AM1_0972     FALSE 0.221 112.000 0.000 NA   NA
 3459153 3459154 AM1_0972 AM1_0973     FALSE 0.178 149.000 0.000 NA   NA
 3459154 3459155 AM1_0973 AM1_0975   kmo FALSE 0.106 217.000 0.000 NA   NA
 3459156 3459157 AM1_0974 AM1_0976     TRUE 0.456 24.000 0.000 NA   NA
 3459157 3459158 AM1_0976 AM1_0977     TRUE 0.447 26.000 0.000 NA   NA
 3459158 3459159 AM1_0977 AM1_0978     TRUE 0.783 44.000 0.000 NA Y NA
 3459159 3459160 AM1_0978 AM1_0979     FALSE 0.326 -25.000 0.000 NA N NA
 3459160 3459161 AM1_0979 AM1_0980     FALSE 0.159 163.000 0.000 NA   NA
 3459162 3459163 AM1_0981 AM1_0982     FALSE 0.183 146.000 0.000 NA   NA
 3459163 3459164 AM1_0982 AM1_0983     FALSE 0.061 328.000 0.000 NA   NA
 3459164 3459165 AM1_0983 AM1_0984     FALSE 0.322 75.000 0.000 NA   NA
 3459165 3459166 AM1_0984 AM1_0985     FALSE 0.407 39.000 0.000 NA   NA
 3459167 3459168 AM1_0986 AM1_0987     TRUE 0.967 39.000 0.333 1.000 Y NA
 3459168 3459169 AM1_0987 AM1_0988     TRUE 0.982 -3.000 0.600 0.093 Y NA
 3459170 3459171 AM1_0989 AM1_0990     FALSE 0.087 248.000 0.000 NA   NA
 3459171 3459172 AM1_0990 AM1_0991     FALSE 0.413 36.000 0.000 NA   NA
 3459173 3459174 AM1_0992 AM1_0993 kaiC kaiB TRUE 0.909 72.000 0.927 1.000   NA
 3459174 3459175 AM1_0993 AM1_0994 kaiB kaiA TRUE 0.934 34.000 0.732 1.000   NA
 3459176 3459177 AM1_0995 AM1_0996   glgB FALSE 0.396 60.000 0.000 1.000 N NA
 3459177 3459178 AM1_0996 AM1_0997 glgB   FALSE 0.313 78.000 0.000 NA   NA
 3459182 3459183 AM1_1001 AM1_1002   cysE FALSE 0.086 250.000 0.000 NA   NA
 3459183 3459184 AM1_1002 AM1_1003 cysE   TRUE 0.481 -7.000 0.000 NA   NA
 3459187 3459188 AM1_1006 AM1_1007     FALSE 0.191 139.000 0.000 NA   NA
 3459188 3459189 AM1_1007 AM1_1008     FALSE 0.059 340.000 0.000 NA   NA
 3459189 3459190 AM1_1008 AM1_1010   ribH FALSE 0.380 55.000 0.000 NA   NA
 3459190 3459191 AM1_1010 AM1_1011 ribH psbZ TRUE 0.787 124.000 0.037 1.000   NA
 3459192 3459193 AM1_1012 AM1_1013     TRUE 0.558 10.000 0.000 NA   NA
 3459193 3459194 AM1_1013 AM1_1014     FALSE 0.368 70.000 0.000 1.000 N NA
 3459194 3459195 AM1_1014 AM1_1015     TRUE 0.983 14.000 0.356 0.005 Y NA
 3459195 3459196 AM1_1015 AM1_1016     TRUE 0.965 35.000 0.128 1.000 Y NA
 3459196 3459197 AM1_1016 AM1_1017     FALSE 0.059 480.000 0.000 1.000   NA
 3459198 3459199 AM1_1018 AM1_1019   chlG TRUE 0.565 5.000 0.000 NA   NA
 3459199 3459200 AM1_1019 AM1_1020 chlG   FALSE 0.267 92.000 0.000 NA   NA
 3459202 3459203 AM1_1022 AM1_1023     FALSE 0.166 158.000 0.000 NA   NA
 3459203 3459204 AM1_1023 AM1_1024     FALSE 0.407 39.000 0.000 NA   NA
 3459205 3459206 AM1_1025 AM1_1026     FALSE 0.410 37.000 0.000 NA   NA
 3459206 3459207 AM1_1026 AM1_1027     FALSE 0.339 71.000 0.000 NA   NA
 3459207 3459208 AM1_1027 AM1_1028     TRUE 0.938 3.000 0.028 NA   NA
 3459208 3459209 AM1_1028 AM1_1029     TRUE 0.559 2.000 0.000 NA   NA
 3459210 3459211 AM1_1030 AM1_1031     FALSE 0.081 257.000 0.000 NA   NA
 3459211 3459212 AM1_1031 AM1_1032     FALSE 0.248 97.000 0.000 NA   NA
 3459214 3459215 AM1_1034 AM1_1035     FALSE 0.322 75.000 0.000 NA   NA
 3459218 3459219 AM1_1038 AM1_1039     FALSE 0.071 282.000 0.000 NA   NA
 3459219 3459220 AM1_1039 AM1_1040     FALSE 0.074 276.000 0.000 NA   NA
 3459220 3459221 AM1_1040 AM1_1041     TRUE 0.950 4.000 0.143 NA   NA
 3459221 3459222 AM1_1041 AM1_1042     FALSE 0.081 257.000 0.000 NA   NA
 3459222 3459223 AM1_1042 AM1_1043     FALSE 0.271 91.000 0.000 NA   NA
 3459223 3459224 AM1_1043 AM1_1044     TRUE 0.916 30.000 0.113 NA   NA
 3459224 3459225 AM1_1044 AM1_1045     FALSE 0.186 143.000 0.000 NA   NA
 3459225 3459226 AM1_1045 AM1_1046     TRUE 0.560 9.000 0.000 NA   NA
 3459226 3459227 AM1_1046 AM1_1047     FALSE 0.346 69.000 0.000 NA   NA
 3459227 3459228 AM1_1047 AM1_1048     TRUE 0.475 20.000 0.000 NA   NA
 3459228 3459229 AM1_1048 AM1_1049     FALSE 0.043 453.000 0.000 NA   NA
 3459229 3459230 AM1_1049 AM1_1050     FALSE 0.038 525.000 0.000 NA   NA
 3459230 3459231 AM1_1050 AM1_1051     FALSE 0.091 240.000 0.000 NA   NA
 3459233 3459234 AM1_1053 AM1_1054     FALSE 0.192 138.000 0.000 NA   NA
 3459235 3459236 AM1_1055 AM1_1056     TRUE 0.504 16.000 0.000 NA   NA
 3459236 3459237 AM1_1056 AM1_1057     FALSE 0.156 166.000 0.000 NA   NA
 3459241 3459242 AM1_1061 AM1_1062   map FALSE 0.256 95.000 0.000 NA   NA
 3459242 3459243 AM1_1062 AM1_1063 map   FALSE 0.111 223.000 0.000 1.000 N NA
 3459247 3459248 AM1_1067 AM1_1068   nadA FALSE 0.284 87.000 0.000 NA   NA
 3459249 3459250 AM1_1069 AM1_1070   glcD FALSE 0.153 170.000 0.000 NA   NA
 3459250 3459251 AM1_1070 AM1_1071 glcD   FALSE 0.086 250.000 0.000 NA   NA
 3459251 3459252 AM1_1071 AM1_1072     FALSE 0.030 815.000 0.000 NA   NA
 3459253 3459254 AM1_1073 AM1_1074     FALSE 0.064 242.000 0.000 NA N NA
 3459254 3459255 AM1_1074 AM1_1075     TRUE 0.940 6.000 0.034 NA   NA
 3459257 3459258 AM1_1077 AM1_1078     FALSE 0.106 217.000 0.000 NA   NA
 3459258 3459259 AM1_1078 AM1_1079     TRUE 0.487 49.000 0.000 1.000   NA
 3459259 3459260 AM1_1079 AM1_1080     TRUE 0.481 -7.000 0.000 NA   NA
 3459260 3459261 AM1_1080 AM1_1081     TRUE 0.482 19.000 0.000 NA   NA
 3459261 3459262 AM1_1081 AM1_1082   ycf4 TRUE 0.931 30.000 0.220 1.000   NA
 3459263 3459264 AM1_1083 AM1_1084 psbD psbC TRUE 0.932 -94.000 0.878 0.002   NA
 3459264 3459265 AM1_1084 AM1_1085 psbC   TRUE 0.697 188.000 0.051 1.000   NA
 3459265 3459266 AM1_1085 AM1_1087   secA FALSE 0.160 206.000 0.000 1.000   NA
 3459267 3459268 AM1_1086 AM1_1088     FALSE 0.115 206.000 0.000 NA   NA
 3459268 3459269 AM1_1088 AM1_1089     FALSE 0.075 275.000 0.000 NA   NA
 3459270 3459271 AM1_1090 AM1_1092     FALSE 0.219 162.000 0.000 1.000   NA
 3459272 3459273 AM1_1091 AM1_1093     FALSE 0.040 563.000 0.000 1.000 N NA
 3459274 3459275 AM1_1094 AM1_1095 argJ   FALSE 0.213 120.000 0.000 NA   NA
 3459275 3459276 AM1_1095 AM1_1096     TRUE 0.488 18.000 0.000 NA   NA
 3459276 3459277 AM1_1096 AM1_1097     TRUE 0.469 21.000 0.000 NA   NA
 3459278 3459279 AM1_1098 AM1_1099     FALSE 0.169 156.000 0.000 NA   NA
 3459279 3459280 AM1_1099 AM1_1100     TRUE 0.444 -15.000 0.000 NA   NA
 3459282 3459283 AM1_1101 AM1_1103     TRUE 0.964 62.000 0.118 0.004 Y NA
 3459283 3459284 AM1_1103 AM1_1104     TRUE 0.905 176.000 1.000 0.004 Y NA
 3459284 3459285 AM1_1104 AM1_1105     FALSE 0.405 106.000 0.000 0.004   NA
 3459285 3459286 AM1_1105 AM1_1106     TRUE 0.638 12.000 0.000 1.000   NA
 3459286 3459287 AM1_1106 AM1_1107     TRUE 0.822 59.000 0.000 0.033 Y NA
 3459287 3459288 AM1_1107 AM1_1108   menD FALSE 0.054 409.000 0.000 1.000 N NA
 3459288 3459289 AM1_1108 AM1_1109 menD   TRUE 0.696 93.000 0.000 1.000 Y NA
 3459290 3459291 AM1_1110 AM1_1111 menA   FALSE 0.069 320.000 0.000 1.000 N NA
 3459291 3459292 AM1_1111 AM1_1112     FALSE 0.297 90.000 0.000 1.000 N NA
 3459292 3459293 AM1_1112 AM1_1113   ppnK TRUE 0.974 21.000 0.314 1.000 Y NA
 3459294 3459295 AM1_1114 AM1_1115     FALSE 0.077 267.000 0.000 NA   NA
 3459295 3459296 AM1_1115 AM1_1116   uvrC FALSE 0.417 -22.000 0.000 NA   NA
 3459296 3459297 AM1_1116 AM1_1117 uvrC   FALSE 0.105 218.000 0.000 NA   NA
 3459297 3459298 AM1_1117 AM1_1118   glgA FALSE 0.160 162.000 0.000 NA   NA
 3459298 3459299 AM1_1118 AM1_1119 glgA   FALSE 0.093 235.000 0.000 NA   NA
 3459302 3459303 AM1_1122 AM1_1123     FALSE 0.231 105.000 0.000 NA   NA
 3459303 3459304 AM1_1123 AM1_1124     FALSE 0.043 460.000 0.000 NA   NA
 3459304 3459305 AM1_1124 AM1_1125     TRUE 0.753 88.000 0.000 0.032 Y NA
 3459305 3459306 AM1_1125 AM1_1126     FALSE 0.410 37.000 0.000 NA   NA
 3459306 3459307 AM1_1126 AM1_1127     FALSE 0.381 54.000 0.000 NA   NA
 3459308 3459309 AM1_1128 AM1_1129   psbF FALSE 0.319 76.000 0.000 NA   NA
 3459309 3459310 AM1_1129 AM1_1130 psbF psbE TRUE 0.966 13.000 0.837 0.002   NA
 3459312 3459313 AM1_1132 AM1_1133     FALSE 0.063 316.000 0.000 NA   NA
 3459314 3459315 AM1_1134 AM1_1135   hli TRUE 0.436 69.000 0.000 1.000   NA
 3459315 3459316 AM1_1135 AM1_1136 hli   FALSE 0.413 36.000 0.000 NA   NA
 3459316 3459317 AM1_1136 AM1_1137     TRUE 0.475 20.000 0.000 NA   NA
 3459318 3459319 AM1_1138 AM1_1139   aroC TRUE 0.489 23.000 0.000 1.000 N NA
 3459319 3459320 AM1_1139 AM1_1140 aroC   FALSE 0.189 141.000 0.000 NA   NA
 3459320 3459321 AM1_1140 AM1_1142   hrcA FALSE 0.118 203.000 0.000 NA   NA
 3459321 3459322 AM1_1142 AM1_1143 hrcA   TRUE 0.891 30.000 0.031 NA N NA
 3459323 3459324 AM1_1144 AM1_6414   ssrA FALSE 0.192 138.000 0.000 NA   NA
 3459324 3459325 AM1_6414 AM1_1145 ssrA   FALSE 0.037 534.000 0.000 NA   NA
 3459325 3459326 AM1_1145 AM1_1146     FALSE 0.426 32.000 0.000 NA   NA
 3459326 3459327 AM1_1146 AM1_1148     FALSE 0.297 83.000 0.000 NA   NA
 3459328 3459329 AM1_1147 AM1_1149     FALSE 0.346 69.000 0.000 NA   NA
 3459329 3459330 AM1_1149 AM1_1150     FALSE 0.162 161.000 0.000 NA   NA
 3459330 3459331 AM1_1150 AM1_1151     FALSE 0.037 547.000 0.000 NA   NA
 3459331 10702626 AM1_1151 AM1_1152     TRUE 0.475 20.000 0.000 NA   NA
 3459332 3459333 AM1_1153 AM1_1154   hup FALSE 0.061 251.000 0.000 NA N NA
 3459337 3459338 AM1_1158 AM1_1159     FALSE 0.250 74.000 0.000 NA N NA
 3459339 3459340 AM1_1160 AM1_1161     TRUE 0.503 251.000 0.007 1.000 N NA
 3459341 3459342 AM1_1162 AM1_1163     TRUE 0.795 137.000 0.353 NA   NA
 3459342 3459343 AM1_1163 AM1_1164     TRUE 0.482 51.000 0.000 1.000   NA
 3459343 3459344 AM1_1164 AM1_1165     FALSE 0.034 412.000 0.000 NA N NA
 3459344 3459345 AM1_1165 AM1_1166   putP FALSE 0.101 182.000 0.000 NA N NA
 3459345 3459346 AM1_1166 AM1_1167 putP   FALSE 0.222 111.000 0.000 NA   NA
 3459346 3459347 AM1_1167 AM1_1168     FALSE 0.046 432.000 0.000 NA   NA
 3459347 3459348 AM1_1168 AM1_1169     FALSE 0.396 48.000 0.000 NA   NA
 3459348 3459349 AM1_1169 AM1_1170     FALSE 0.212 121.000 0.000 NA   NA
 3459353 3459354 AM1_1174 AM1_1175     TRUE 0.560 9.000 0.000 NA   NA
 3459354 3459355 AM1_1175 AM1_1176     FALSE 0.394 -34.000 0.000 NA   NA
 3459355 3459356 AM1_1176 AM1_1177     FALSE 0.225 108.000 0.000 NA   NA
 3459356 3459357 AM1_1177 AM1_1179     FALSE 0.213 120.000 0.000 NA   NA
 3459358 3459359 AM1_1178 AM1_1180     TRUE 0.654 6.000 0.000 1.000   NA
 3459360 3459361 AM1_1181 AM1_1182     FALSE 0.271 91.000 0.000 NA   NA
 3459362 3459363 AM1_1183 AM1_1184     TRUE 0.456 24.000 0.000 NA   NA
 3459364 3459365 AM1_1185 AM1_1186     FALSE 0.315 154.000 0.000 0.011   NA
 3459366 3459367 AM1_1187 AM1_1188 ligA   FALSE 0.225 108.000 0.000 NA   NA
 3459367 3459368 AM1_1188 AM1_1189     TRUE 0.517 15.000 0.000 NA   NA
 3459369 3459370 AM1_1190 AM1_1191   por FALSE 0.380 55.000 0.000 NA   NA
 3459371 3459372 AM1_1192 AM1_1193     FALSE 0.400 44.000 0.000 NA   NA
 3459372 3459373 AM1_1193 AM1_1194   nthA TRUE 0.959 17.000 0.583 0.001   NA
 3459373 3459374 AM1_1194 AM1_1195 nthA nthB TRUE 0.970 4.000 0.917 0.001   NA
 3459374 3459375 AM1_1195 AM1_1196 nthB   TRUE 0.519 -3.000 0.000 NA   NA
 3459375 3459376 AM1_1196 AM1_1197     TRUE 0.517 15.000 0.000 NA   NA
 3459379 3459380 AM1_1200 AM1_1201     FALSE 0.127 195.000 0.000 NA   NA
 3459385 3459386 AM1_1206 AM1_1207   rpoE TRUE 0.565 5.000 0.000 NA   NA
 3459386 3459387 AM1_1207 AM1_1208 rpoE   TRUE 0.465 22.000 0.000 NA   NA
 3459388 3459389 AM1_1209 AM1_1210     FALSE 0.153 170.000 0.000 NA   NA
 3459389 3459390 AM1_1210 AM1_1211     FALSE 0.127 195.000 0.000 NA   NA
 3459391 3459392 AM1_1212 AM1_1213     FALSE 0.042 477.000 0.000 NA   NA
 3459396 3459397 AM1_1217 AM1_1218     FALSE 0.029 1336.000 0.000 NA   NA
 3459397 3459398 AM1_1218 AM1_1219     FALSE 0.325 74.000 0.000 NA   NA
 3459398 3459399 AM1_1219 AM1_1220     TRUE 0.946 16.000 1.000 NA   NA
 3459399 3459400 AM1_1220 AM1_1221   nifS FALSE 0.183 190.000 0.000 1.000   NA
 3459400 3459401 AM1_1221 AM1_1222 nifS sufD TRUE 0.930 19.000 0.081 1.000 N NA
 3459401 3459402 AM1_1222 AM1_1223 sufD sufC TRUE 0.982 0.000 0.482 1.000 Y NA
 3459402 3459403 AM1_1223 AM1_1224 sufC sufB TRUE 0.966 52.000 0.466 1.000 Y NA
 3459403 3459404 AM1_1224 AM1_1225 sufB   FALSE 0.236 102.000 0.000 NA   NA
 3459405 3459406 AM1_1226 AM1_1227     FALSE 0.165 159.000 0.000 NA   NA
 3459407 3459408 AM1_1228 AM1_1229     FALSE 0.075 369.000 0.000 1.000   NA
 3459408 3459409 AM1_1229 AM1_1230     FALSE 0.198 93.000 0.000 NA N NA
 3459409 3459410 AM1_1230 AM1_1231     FALSE 0.368 61.000 0.000 NA   NA
 3459410 3459411 AM1_1231 AM1_1232     TRUE 0.903 35.000 0.057 NA   NA
 3459411 3459412 AM1_1232 AM1_1233     FALSE 0.060 332.000 0.000 NA   NA
 3459414 3459415 AM1_1234 AM1_1236     FALSE 0.342 70.000 0.000 NA   NA
 3459415 3459416 AM1_1236 AM1_1237     FALSE 0.238 101.000 0.000 NA   NA
 3459418 3459419 AM1_1238 AM1_1240     FALSE 0.396 48.000 0.000 NA   NA
 3459419 3459420 AM1_1240 AM1_1241     FALSE 0.391 50.000 0.000 NA   NA
 3459422 3459423 AM1_1243 AM1_1244     TRUE 0.966 5.000 0.385 0.064   NA
 3459425 3459426 AM1_1246 AM1_1247   prfA FALSE 0.205 126.000 0.000 NA   NA
 3459426 3459427 AM1_1247 AM1_1248 prfA rpmE TRUE 0.959 55.000 0.110 1.000 Y NA
 3459427 3459428 AM1_1248 AM1_1249 rpmE rpsI TRUE 0.966 47.000 0.062 0.010 Y NA
 3459428 3459429 AM1_1249 AM1_1250 rpsI rplM TRUE 0.985 0.000 0.601 0.010 Y NA
 3459429 3459430 AM1_1250 AM1_1251 rplM truA TRUE 0.963 33.000 0.058 1.000 Y NA
 3459430 3459431 AM1_1251 AM1_1252 truA rplQ TRUE 0.972 20.000 0.102 1.000 Y NA
 3459431 3459432 AM1_1252 AM1_1253 rplQ rpoA TRUE 0.956 12.000 0.873 1.000 N NA
 3459432 3459433 AM1_1253 AM1_1254 rpoA rpsK TRUE 0.643 228.000 0.308 1.000 N NA
 3459433 3459434 AM1_1254 AM1_1255 rpsK rpsM TRUE 0.970 60.000 0.810 0.010 Y NA
 3459435 3459436 AM1_1256 AM1_1257 metH   FALSE 0.407 39.000 0.000 NA   NA
 3459437 3459438 AM1_1258 AM1_1259     FALSE 0.426 -19.000 0.000 NA   NA
 3459440 3459441 AM1_1261 AM1_1262     TRUE 0.450 33.000 0.000 1.000 N NA
 3459443 3459444 AM1_1264 AM1_1265     TRUE 0.510 35.000 0.000 1.000   NA
 3459444 3459445 AM1_1265 AM1_1266     TRUE 0.875 57.000 0.005 1.000   NA
 3459445 3459446 AM1_1266 AM1_1267     FALSE 0.216 118.000 0.000 NA   NA
 3459446 3459447 AM1_1267 AM1_1268     FALSE 0.030 859.000 0.000 NA   NA
 3459447 3459448 AM1_1268 AM1_1269     FALSE 0.259 94.000 0.000 NA   NA
 3459451 3459452 AM1_1272 AM1_1273     FALSE 0.152 125.000 0.000 NA N NA
 3459452 3459453 AM1_1273 AM1_1274   serA TRUE 0.604 138.000 0.000 1.000 Y NA
 3459453 3459454 AM1_1274 AM1_1275 serA prmA TRUE 0.942 0.000 0.053 1.000 N NA
 3459454 3459455 AM1_1275 AM1_1276 prmA   FALSE 0.029 1459.000 0.000 NA   NA
 3459459 3459460 AM1_1280 AM1_1281     FALSE 0.062 321.000 0.000 NA   NA
 3459460 3459461 AM1_1281 AM1_1282     FALSE 0.175 152.000 0.000 NA   NA
 3459463 3459464 AM1_1284 AM1_1285     FALSE 0.370 60.000 0.000 NA   NA
 3459464 3459465 AM1_1285 AM1_1286     FALSE 0.147 175.000 0.000 NA   NA
 3459466 3459467 AM1_1287 AM1_1288     TRUE 0.519 -3.000 0.000 NA   NA
 3459467 3459468 AM1_1288 AM1_1289     FALSE 0.397 47.000 0.000 NA   NA
 3459469 3459470 AM1_1290 AM1_1291     FALSE 0.130 192.000 0.000 NA   NA
 3459470 3459471 AM1_1291 AM1_1292     TRUE 0.465 -10.000 0.000 NA   NA
 3459471 3459472 AM1_1292 AM1_1293     FALSE 0.223 110.000 0.000 NA   NA
 3459472 3459473 AM1_1293 AM1_1295     FALSE 0.421 -21.000 0.000 NA   NA
 3459475 3459476 AM1_1296 AM1_1297     TRUE 0.519 -3.000 0.000 NA   NA
 3459476 3459477 AM1_1297 AM1_1298     TRUE 0.450 -13.000 0.000 NA   NA
 3459477 3459478 AM1_1298 AM1_1300     TRUE 0.559 2.000 0.000 NA   NA
 3459478 3459479 AM1_1300 AM1_1301     FALSE 0.362 -51.000 0.000 NA   NA
 3459480 3459481 AM1_1302 AM1_1303     TRUE 0.443 27.000 0.000 NA   NA
 3459482 3459483 AM1_1304 AM1_1305 hli rpoD FALSE 0.212 121.000 0.000 NA   NA
 3459485 3459486 AM1_1307 AM1_1308   ftsH FALSE 0.426 32.000 0.000 NA   NA
 3459486 3459487 AM1_1308 AM1_1309 ftsH   FALSE 0.055 396.000 0.000 1.000 N NA
 3459489 3459490 AM1_1311 AM1_1312     FALSE 0.156 166.000 0.000 NA   NA
 3459493 3459494 AM1_1315 AM1_1316     FALSE 0.233 104.000 0.000 NA   NA
 3459496 3459497 AM1_1318 AM1_1319     FALSE 0.394 49.000 0.000 NA   NA
 3459502 3459503 AM1_1324 AM1_1325     TRUE 0.661 13.000 0.000 0.041 N NA
 3459503 3459504 AM1_1325 AM1_1326     FALSE 0.397 79.000 0.000 1.000   NA
 3459504 3459505 AM1_1326 AM1_1327     TRUE 0.519 -3.000 0.000 NA   NA
 3459505 3459506 AM1_1327 AM1_1328     FALSE 0.402 42.000 0.000 NA   NA
 3459506 3459507 AM1_1328 AM1_1329     TRUE 0.461 23.000 0.000 NA   NA
 3459507 3459508 AM1_1329 AM1_1330     FALSE 0.059 340.000 0.000 NA   NA
 3459508 3459509 AM1_1330 AM1_1331     FALSE 0.150 172.000 0.000 NA   NA
 3459509 3459510 AM1_1331 AM1_1332     FALSE 0.217 116.000 0.000 NA   NA
 3459511 3459512 AM1_1333 AM1_1334     FALSE 0.085 251.000 0.000 NA   NA
 3459513 3459514 AM1_1335 AM1_1336     TRUE 0.601 140.000 0.000 1.000 Y NA
 3459516 3459517 AM1_1338 AM1_1339     FALSE 0.047 417.000 0.000 NA   NA
 3459518 3459519 AM1_1340 AM1_1341     TRUE 0.443 27.000 0.000 NA   NA
 3459519 3459520 AM1_1341 AM1_1342     FALSE 0.346 69.000 0.000 NA   NA
 3459522 3459523 AM1_1344 AM1_1346     FALSE 0.047 423.000 0.000 NA   NA
 3459523 3459524 AM1_1346 AM1_1347   trpA FALSE 0.394 49.000 0.000 NA   NA
 3459524 3459525 AM1_1347 AM1_1348 trpA   TRUE 0.957 3.000 0.175 1.000   NA
 3459525 3459526 AM1_1348 AM1_1349     TRUE 0.957 5.000 0.925 NA   NA
 3459526 3459527 AM1_1349 AM1_1350   lpxD FALSE 0.186 143.000 0.000 NA   NA
 3459527 3459528 AM1_1350 AM1_1351 lpxD   TRUE 0.894 34.000 0.005 1.000   NA
 3459529 3459530 AM1_1352 AM1_1353 pdhA   FALSE 0.224 126.000 0.000 1.000 N NA
 3459531 3459532 AM1_1354 AM1_1355     FALSE 0.401 43.000 0.000 NA   NA
 3459538 3459539 AM1_1361 AM1_1362     FALSE 0.278 89.000 0.000 NA   NA
 3459540 3459541 AM1_1363 AM1_1364     TRUE 0.938 16.000 0.114 1.000 N NA
 3459542 3459543 AM1_1365 AM1_1366   comB FALSE 0.113 208.000 0.000 NA   NA
 3459545 3459546 AM1_1368 AM1_1369 hli hli FALSE 0.161 269.000 0.000 0.003   NA
 3459547 3459548 AM1_1370 AM1_1371   ndhK FALSE 0.063 318.000 0.000 NA   NA
 3459548 3459549 AM1_1371 AM1_1373 ndhK pheS FALSE 0.293 91.000 0.000 1.000 N NA
 3459551 3459552 AM1_1374 AM1_1375 dus   TRUE 0.461 23.000 0.000 NA   NA
 3459552 3459553 AM1_1375 AM1_1376     FALSE 0.394 -34.000 0.000 NA   NA
 3459553 3459554 AM1_1376 AM1_1377     FALSE 0.048 450.000 0.000 1.000 N NA
 3459554 3459555 AM1_1377 AM1_1378     FALSE 0.226 449.000 0.000 1.000 Y NA
 3459555 3459556 AM1_1378 AM1_1379     TRUE 0.687 122.000 0.000 0.004 Y NA
 3459561 3459562 AM1_1384 AM1_1385     TRUE 0.565 5.000 0.000 NA   NA
 3459562 3459563 AM1_1385 AM1_1386     FALSE 0.400 44.000 0.000 NA   NA
 3459563 3459564 AM1_1386 AM1_1387     FALSE 0.222 111.000 0.000 NA   NA
 3459565 3459566 AM1_1388 AM1_1389 hemD aroG FALSE 0.350 74.000 0.000 1.000 N NA
 3459568 3459569 AM1_1391 AM1_1392     FALSE 0.038 520.000 0.000 NA   NA
 3459570 3459571 AM1_1393 AM1_1394   fumC FALSE 0.342 70.000 0.000 NA   NA
 3459572 3459573 AM1_1395 AM1_1396 pilM pilN TRUE 0.977 5.000 0.087 NA Y NA
 3459573 3459574 AM1_1396 AM1_1397 pilN pilO TRUE 0.949 -3.000 0.760 NA   NA
 3459574 3459575 AM1_1397 AM1_1398 pilO   TRUE 0.833 99.000 0.240 NA   NA
 3459576 3459577 AM1_1399 AM1_1400 rpe   FALSE 0.212 135.000 0.000 1.000 N NA
 3459577 3459578 AM1_1400 AM1_1401     TRUE 0.519 43.000 0.000 0.089 N NA
 3459578 3459579 AM1_1401 AM1_1402     FALSE 0.339 71.000 0.000 NA   NA
 3459581 3459582 AM1_1404 AM1_1405 murE   TRUE 0.916 23.000 0.049 NA   NA
 3459582 3459583 AM1_1405 AM1_1406     FALSE 0.360 64.000 0.000 NA   NA
 3459583 3459584 AM1_1406 AM1_1407     FALSE 0.076 272.000 0.000 NA   NA
 3459585 3459586 AM1_1408 AM1_1409     TRUE 0.689 15.000 0.000 0.041   NA
 3459586 3459587 AM1_1409 AM1_1410     TRUE 0.507 36.000 0.000 1.000   NA
 3459588 3459589 AM1_1411 AM1_1412     FALSE 0.183 146.000 0.000 NA   NA
 3459589 3459590 AM1_1412 AM1_1413     TRUE 0.946 5.000 0.075 NA   NA
 3459590 3459591 AM1_1413 AM1_1414     TRUE 0.956 2.000 0.805 NA   NA
 3459591 3459592 AM1_1414 AM1_1415     FALSE 0.189 141.000 0.000 NA   NA
 3459592 3459593 AM1_1415 AM1_1416     FALSE 0.076 294.000 0.000 1.000 N NA
 3459595 3459596 AM1_1418 AM1_6415     FALSE 0.076 271.000 0.000 NA   NA
 3459596 3459597 AM1_6415 AM1_6416     FALSE 0.263 93.000 0.000 NA   NA
 3459597 3459598 AM1_6416 AM1_1420     FALSE 0.126 196.000 0.000 NA   NA
 3459598 3459599 AM1_1420 AM1_1421     TRUE 0.517 15.000 0.000 NA   NA
 3459599 3459600 AM1_1421 AM1_6417     FALSE 0.153 170.000 0.000 NA   NA
 3459600 3459601 AM1_6417 AM1_1422     FALSE 0.057 347.000 0.000 NA   NA
 3459601 3459602 AM1_1422 AM1_1423     TRUE 0.451 25.000 0.000 NA   NA
 3459602 3459603 AM1_1423 AM1_1424     FALSE 0.409 38.000 0.000 NA   NA
 3459605 3459606 AM1_1426 AM1_1427     FALSE 0.360 89.000 0.000 1.000   NA
 3459606 3459607 AM1_1427 AM1_1428   pcrA TRUE 0.498 41.000 0.000 1.000   NA
 3459607 3459608 AM1_1428 AM1_1429 pcrA   FALSE 0.047 417.000 0.000 NA   NA
 3459608 3459609 AM1_1429 AM1_1430   pabA TRUE 0.907 52.000 0.231 NA   NA
 3459609 3459610 AM1_1430 AM1_1431 pabA   TRUE 0.820 113.000 0.231 1.000 N NA
 3459610 3459611 AM1_1431 AM1_1432     TRUE 0.718 172.000 0.123 NA   NA
 3459611 3459612 AM1_1432 AM1_1433     TRUE 0.920 19.000 0.039 NA   NA
 3459612 3459613 AM1_1433 AM1_1434   purQ FALSE 0.132 191.000 0.000 NA   NA
 3459613 3459614 AM1_1434 AM1_1435 purQ purS TRUE 0.984 -3.000 0.656 0.001 Y NA
 3459614 3459615 AM1_1435 AM1_1436 purS gcvT TRUE 0.433 70.000 0.000 1.000   NA
 3459617 3459618 AM1_1438 AM1_1439   psaJ FALSE 0.206 125.000 0.000 NA   NA
 3459618 3459619 AM1_1439 AM1_1440 psaJ psaF TRUE 0.966 5.000 0.318 0.012   NA
 3459620 3459621 AM1_1441 AM1_1442     TRUE 0.547 -3.000 0.000 1.000 N NA
 3459622 3459623 AM1_1443 AM1_1444   chlN FALSE 0.050 602.000 0.000 1.000   NA
 3459623 3459624 AM1_1444 AM1_1445 chlN chlL TRUE 0.856 92.000 0.039 0.001 N NA
 3459624 3459625 AM1_1445 AM1_1446 chlL   FALSE 0.083 255.000 0.000 NA   NA
 3459626 3459627 AM1_1447 AM1_1448     TRUE 0.519 -3.000 0.000 NA   NA
 3459627 3459628 AM1_1448 AM1_1449     FALSE 0.135 188.000 0.000 NA   NA
 3459628 3459629 AM1_1449 AM1_1450     TRUE 0.955 55.000 0.041 1.000 Y NA
 3459629 3459630 AM1_1450 AM1_1451     TRUE 0.813 83.000 0.006 NA   NA
 3459631 3459632 AM1_1452 AM1_1453   rpsA FALSE 0.307 80.000 0.000 NA   NA
 3459632 3459633 AM1_1453 AM1_1454 rpsA   FALSE 0.115 257.000 0.000 1.000   NA
 3459634 3459635 AM1_1455 AM1_1456     TRUE 0.873 86.000 0.619 NA   NA
 3459636 3459637 AM1_1457 AM1_1458     FALSE 0.293 84.000 0.000 NA   NA
 3459638 3459639 AM1_1459 AM1_1460     TRUE 0.560 9.000 0.000 NA   NA
 3459639 3459640 AM1_1460 AM1_1461     TRUE 0.433 30.000 0.000 NA   NA
 3459641 3459642 AM1_1462 AM1_1463     FALSE 0.186 143.000 0.000 NA   NA
 3459642 3459643 AM1_1463 AM1_1464     FALSE 0.078 214.000 0.000 NA N NA
 3459643 3459644 AM1_1464 AM1_1465     FALSE 0.358 65.000 0.000 NA   NA
 3459644 3459645 AM1_1465 AM1_1466     FALSE 0.215 119.000 0.000 NA   NA
 3459645 3459646 AM1_1466 AM1_1467     FALSE 0.066 304.000 0.000 NA   NA
 3459647 3459648 AM1_1468 AM1_1469     TRUE 0.979 16.000 1.000 1.000 Y NA
 3459648 3459649 AM1_1469 AM1_1470     FALSE 0.173 153.000 0.000 NA   NA
 3459649 3459650 AM1_1470 AM1_1471     FALSE 0.057 348.000 0.000 NA   NA
 3459650 3459651 AM1_1471 AM1_1472     FALSE 0.181 147.000 0.000 NA   NA
 3459651 3459652 AM1_1472 AM1_1473     FALSE 0.360 64.000 0.000 NA   NA
 3459653 3459654 AM1_1474 AM1_1475     TRUE 0.477 53.000 0.000 1.000   NA
 3459655 3459656 AM1_1476 AM1_1477     FALSE 0.106 217.000 0.000 NA   NA
 3459657 3459658 AM1_1478 AM1_1479     FALSE 0.422 33.000 0.000 NA   NA
 3459658 3459659 AM1_1479 AM1_1480     FALSE 0.168 157.000 0.000 NA   NA
 3459659 3459660 AM1_1480 AM1_1481     TRUE 0.891 -3.000 0.000 0.088 Y NA
 3459660 3459661 AM1_1481 AM1_1482     TRUE 0.952 13.000 0.167 1.000   NA
 3459661 3459662 AM1_1482 AM1_1483     TRUE 0.436 29.000 0.000 NA   NA
 3459662 3459663 AM1_1483 AM1_1484     TRUE 0.565 5.000 0.000 NA   NA
 3459664 3459665 AM1_1485 AM1_1486     FALSE 0.130 192.000 0.000 NA   NA
 3459665 10702627 AM1_1486 AM1_1487     FALSE 0.103 220.000 0.000 NA   NA
 10702627 3459666 AM1_1487 AM1_1488     FALSE 0.097 229.000 0.000 NA   NA
 3459667 3459668 AM1_1489 AM1_1490   upp FALSE 0.221 161.000 0.000 1.000   NA
 3459669 3459670 AM1_1491 AM1_1492     FALSE 0.242 99.000 0.000 NA   NA
 3459670 3459671 AM1_1492 AM1_1493     TRUE 0.529 14.000 0.000 NA   NA
 3459671 3459672 AM1_1493 AM1_1494     FALSE 0.271 91.000 0.000 NA   NA
 3459673 3459674 AM1_1495 AM1_1496     FALSE 0.037 539.000 0.000 NA   NA
 3459675 3459676 AM1_1497 AM1_1498 glnA   FALSE 0.038 521.000 0.000 NA   NA
 3459676 3459677 AM1_1498 AM1_1499     FALSE 0.075 274.000 0.000 NA   NA
 3459677 3459678 AM1_1499 AM1_1500     FALSE 0.269 446.000 0.000 0.019 Y NA
 3459678 3459679 AM1_1500 AM1_1501     TRUE 0.873 21.000 0.000 0.032 Y NA
 3459679 3459680 AM1_1501 AM1_1502     FALSE 0.268 130.000 0.000 1.000   NA
 3459680 3459681 AM1_1502 AM1_1503     TRUE 0.461 23.000 0.000 NA   NA
 3459683 3459684 AM1_1505 AM1_1506   fba FALSE 0.189 141.000 0.000 NA   NA
 3459685 3459686 AM1_1507 AM1_1508     FALSE 0.389 51.000 0.000 NA   NA
 3459686 3459687 AM1_1508 AM1_1509     FALSE 0.035 742.000 0.000 1.000 N NA
 3459687 3459688 AM1_1509 AM1_1510   gshA TRUE 0.912 27.000 0.021 1.000   NA
 3459689 3459690 AM1_1511 AM1_1512     TRUE 0.547 -48.000 0.000 0.038   NA
 3459693 3459694 AM1_1515 AM1_1516     FALSE 0.193 137.000 0.000 NA   NA
 3459694 3459695 AM1_1516 AM1_1517     FALSE 0.103 220.000 0.000 NA   NA
 3459695 3459696 AM1_1517 AM1_1518     TRUE 0.908 34.000 0.087 NA   NA
 3459696 3459697 AM1_1518 AM1_1519     FALSE 0.326 97.000 0.000 1.000   NA
 3459697 3459698 AM1_1519 AM1_1520     FALSE 0.160 162.000 0.000 NA   NA
 3459698 3459699 AM1_1520 AM1_1521     FALSE 0.201 129.000 0.000 NA   NA
 3459699 3459700 AM1_1521 AM1_1522     FALSE 0.208 124.000 0.000 NA   NA
 3459700 3459701 AM1_1522 AM1_1523     FALSE 0.183 146.000 0.000 NA   NA
 3459701 3459702 AM1_1523 AM1_1524     TRUE 0.465 22.000 0.000 NA   NA
 3459702 3459703 AM1_1524 AM1_1525   murD FALSE 0.259 94.000 0.000 NA   NA
 3459703 3459704 AM1_1525 AM1_1526 murD   FALSE 0.355 73.000 0.000 1.000 N NA
 3459704 3459705 AM1_1526 AM1_1527     FALSE 0.311 121.000 0.000 0.040 N NA
 3459707 3459708 AM1_1529 AM1_1530     TRUE 0.636 180.000 0.009 NA   NA
 3459708 3459709 AM1_1530 AM1_1531   gcvH FALSE 0.116 205.000 0.000 NA   NA
 3459709 3459710 AM1_1531 AM1_1532 gcvH gcvT TRUE 0.961 77.000 0.317 0.001 Y NA
 3459710 3459711 AM1_1532 AM1_1533 gcvT   FALSE 0.193 181.000 0.000 1.000   NA
 3459711 3459712 AM1_1533 AM1_1534     FALSE 0.085 336.000 0.000 1.000   NA
 3459712 3459713 AM1_1534 AM1_1535     FALSE 0.297 83.000 0.000 NA   NA
 3459715 3459716 AM1_1537 AM1_1538     FALSE 0.050 393.000 0.000 NA   NA
 3459716 3459717 AM1_1538 AM1_1539   chlB FALSE 0.413 36.000 0.000 NA   NA
 3459718 3459719 AM1_1540 AM1_1541 thrS   FALSE 0.403 -28.000 0.000 NA   NA
 3459719 3459720 AM1_1541 AM1_1542     FALSE 0.274 90.000 0.000 NA   NA
 3459720 3459721 AM1_1542 AM1_1543     FALSE 0.197 132.000 0.000 NA   NA
 3459721 3459722 AM1_1543 AM1_1544     TRUE 0.482 19.000 0.000 NA   NA
 3459722 3459723 AM1_1544 AM1_1545     FALSE 0.048 407.000 0.000 NA   NA
 3459723 3459724 AM1_1545 AM1_1546     TRUE 0.955 2.000 0.500 NA   NA
 3459724 3459725 AM1_1546 AM1_1547     FALSE 0.048 407.000 0.000 NA   NA
 3459725 10702628 AM1_1547 AM1_1548     TRUE 0.444 -15.000 0.000 NA   NA
 10702628 3459726 AM1_1548 AM1_1549     FALSE 0.271 91.000 0.000 NA   NA
 3459727 3459728 AM1_1550 AM1_1551 nrdG   FALSE 0.242 148.000 0.000 1.000   NA
 3459730 3459731 AM1_1553 AM1_1554     FALSE 0.057 348.000 0.000 NA   NA
 3459732 3459733 AM1_1555 AM1_1556     FALSE 0.072 280.000 0.000 NA   NA
 3459734 3459735 AM1_1557 AM1_1558   apcA FALSE 0.045 720.000 0.000 1.000   NA
 3459735 3459736 AM1_1558 AM1_1559 apcA   TRUE 0.620 27.000 0.000 0.047   NA
 3459737 3459738 AM1_1560 AM1_1561 ccb2   TRUE 0.857 69.000 0.021 NA   NA
 3459742 3459743 AM1_1565 AM1_1566     TRUE 0.981 -3.000 0.176 0.037 Y NA
 3459743 3459744 AM1_1566 AM1_1567     FALSE 0.211 122.000 0.000 NA   NA
 3459745 3459746 AM1_1568 AM1_1569     TRUE 0.452 86.000 0.000 0.062   NA
 3459746 3459747 AM1_1569 AM1_1570     FALSE 0.258 176.000 0.000 0.062   NA
 3459747 3459748 AM1_1570 AM1_1571     TRUE 0.692 181.000 0.061 1.000 N NA
 3459749 3459750 AM1_1572 AM1_1573     TRUE 0.495 17.000 0.000 NA   NA
 3459750 3459751 AM1_1573 AM1_1574     FALSE 0.070 290.000 0.000 NA   NA
 3459751 3459752 AM1_1574 AM1_1575     TRUE 0.955 6.000 0.400 NA   NA
 3459753 3459754 AM1_1576 AM1_1577     FALSE 0.085 252.000 0.000 NA   NA
 3459754 3459755 AM1_1577 AM1_1578     TRUE 0.561 8.000 0.000 NA   NA
 3459756 3459757 AM1_1579 AM1_1580     FALSE 0.143 179.000 0.000 NA   NA
 3459758 3459759 AM1_1581 AM1_1582     FALSE 0.349 68.000 0.000 NA   NA
 3459761 3459762 AM1_1584 AM1_1585     FALSE 0.236 117.000 0.000 1.000 N NA
 3459764 3459765 AM1_1587 AM1_1588     FALSE 0.033 632.000 0.000 NA   NA
 3459765 3459766 AM1_1588 AM1_1589     FALSE 0.240 100.000 0.000 NA   NA
 3459767 3459768 AM1_1590 AM1_1591     TRUE 0.548 0.000 0.000 NA   NA
 3459770 3459771 AM1_1593 AM1_1594   hli FALSE 0.067 297.000 0.000 NA   NA
 3459771 3459772 AM1_1594 AM1_1595 hli   TRUE 0.561 8.000 0.000 NA   NA
 3459772 3459773 AM1_1595 AM1_1596     TRUE 0.430 31.000 0.000 NA   NA
 3459773 3459774 AM1_1596 AM1_1597     FALSE 0.032 707.000 0.000 NA   NA
 3459774 3459775 AM1_1597 AM1_1598     TRUE 0.456 24.000 0.000 NA   NA
 3459775 3459776 AM1_1598 AM1_1599   ftsH FALSE 0.365 62.000 0.000 NA   NA
 3459776 3459777 AM1_1599 AM1_1600 ftsH   FALSE 0.121 200.000 0.000 NA   NA
 3459778 3459779 AM1_1601 AM1_1602     TRUE 0.965 58.000 0.714 1.000 Y NA
 3459779 3459780 AM1_1602 AM1_1603     FALSE 0.143 179.000 0.000 NA   NA
 3459781 3459782 AM1_1604 AM1_1605     FALSE 0.058 343.000 0.000 NA   NA
 3459782 3459783 AM1_1605 AM1_1606     TRUE 0.443 27.000 0.000 NA   NA
 3459784 3459785 AM1_1607 AM1_1608     FALSE 0.370 60.000 0.000 NA   NA
 3459788 3459789 AM1_1611 AM1_1612     FALSE 0.217 117.000 0.000 NA   NA
 3459789 10702629 AM1_1612 AM1_1613     TRUE 0.444 -15.000 0.000 NA   NA
 10702629 3459790 AM1_1613 AM1_1614     FALSE 0.200 130.000 0.000 NA   NA
 3459790 3459791 AM1_1614 AM1_1615     TRUE 0.558 10.000 0.000 NA   NA
 3459791 3459792 AM1_1615 AM1_1616     TRUE 0.547 -48.000 0.000 0.038   NA
 3459794 3459795 AM1_1618 AM1_1619     FALSE 0.289 116.000 0.000 1.000   NA
 3459797 3459798 AM1_1621 AM1_1622     TRUE 0.456 0.000 0.000 NA N NA
 3459798 3459799 AM1_1622 AM1_1623     TRUE 0.939 14.000 0.188 NA N NA
 3459800 3459801 AM1_1624 AM1_1625     FALSE 0.058 342.000 0.000 NA   NA
 3459801 3459802 AM1_1625 AM1_1626     TRUE 0.430 31.000 0.000 NA   NA
 3459802 3459803 AM1_1626 AM1_1627     FALSE 0.045 440.000 0.000 NA   NA
 3459804 3459805 AM1_1628 AM1_1629     TRUE 0.654 6.000 0.000 1.000   NA
 3459806 3459807 AM1_1630 AM1_1631 acnB   FALSE 0.288 86.000 0.000 NA   NA
 3459807 3459808 AM1_1631 AM1_1632     TRUE 0.565 5.000 0.000 NA   NA
 3459809 10702630 AM1_1633 AM1_1634     FALSE 0.204 127.000 0.000 NA   NA
 3459810 3459811 AM1_1636 AM1_1637   psaK FALSE 0.241 149.000 0.000 1.000   NA
 3459812 3459813 AM1_1638 AM1_1639 trpF   FALSE 0.110 225.000 0.000 1.000 N NA
 3459814 3459815 AM1_1640 AM1_1641 pyrD   TRUE 0.432 40.000 0.000 1.000 N NA
 3459815 3459816 AM1_1641 AM1_1642   secG TRUE 0.915 18.000 0.014 1.000 N NA
 3459816 3459817 AM1_1642 AM1_1643 secG gpmI TRUE 0.793 106.000 0.041 1.000 N NA
 3459817 3459818 AM1_1643 AM1_1644 gpmI   FALSE 0.159 177.000 0.000 1.000 N NA
 3459819 3459820 AM1_1645 AM1_1646 ppsA   TRUE 0.434 39.000 0.000 1.000 N NA
 3459821 3459822 AM1_1647 AM1_1648     FALSE 0.170 155.000 0.000 NA   NA
 3459822 3459823 AM1_1648 AM1_1649     FALSE 0.042 333.000 0.000 NA N NA
 3459823 3459824 AM1_1649 AM1_1650     FALSE 0.060 252.000 0.000 NA N NA
 3459825 3459826 AM1_1651 AM1_1652 ndhN   TRUE 0.897 79.000 0.595 1.000   NA
 3459826 3459827 AM1_1652 AM1_1653     TRUE 0.921 41.000 0.189 1.000   NA
 3459827 3459828 AM1_1653 AM1_1655     FALSE 0.343 93.000 0.000 1.000   NA
 3459830 3459831 AM1_1656 AM1_1657     FALSE 0.021 962.000 0.000 NA N NA
 3459832 3459833 AM1_1658 AM1_1659 speA   FALSE 0.409 38.000 0.000 NA   NA
 3459833 3459834 AM1_1659 AM1_1660   psaC TRUE 0.778 116.000 0.043 NA   NA
 3459834 3459835 AM1_1660 AM1_1661 psaC   FALSE 0.122 199.000 0.000 NA   NA
 3459835 3459836 AM1_1661 AM1_1662   gltB FALSE 0.288 86.000 0.000 NA   NA
 3459838 3459839 AM1_1664 AM1_1665     TRUE 0.564 4.000 0.000 NA   NA
 3459839 3459840 AM1_1665 AM1_1666     FALSE 0.413 36.000 0.000 NA   NA
 3459843 3459844 AM1_1669 AM1_1670     FALSE 0.031 784.000 0.000 NA   NA
 3459845 3459846 AM1_1671 AM1_1672     TRUE 0.482 19.000 0.000 NA   NA
 3459846 3459847 AM1_1672 AM1_1673     FALSE 0.047 423.000 0.000 NA   NA
 3459847 3459848 AM1_1673 AM1_1674     FALSE 0.119 202.000 0.000 NA   NA
 3459848 3459849 AM1_1674 AM1_1675   recF TRUE 0.503 38.000 0.000 1.000   NA
 3459849 3459850 AM1_1675 AM1_1676 recF rnd TRUE 0.653 7.000 0.000 1.000   NA
 3459851 3459852 AM1_1677 AM1_1678     TRUE 0.488 18.000 0.000 NA   NA
 3459852 3459853 AM1_1678 AM1_1679     FALSE 0.399 -31.000 0.000 NA   NA
 3459853 3459854 AM1_1679 AM1_1680     FALSE 0.153 170.000 0.000 NA   NA
 3459854 3459855 AM1_1680 AM1_1681     FALSE 0.233 104.000 0.000 NA   NA
 3459855 3459856 AM1_1681 AM1_1682     FALSE 0.170 155.000 0.000 NA   NA
 3459859 3459860 AM1_1685 AM1_1686 ggpS   TRUE 0.451 25.000 0.000 NA   NA
 3459861 3459862 AM1_1687 AM1_1688   glpK TRUE 0.952 18.000 0.200 0.015   NA
 3459862 3459863 AM1_1688 AM1_1689 glpK   FALSE 0.054 537.000 0.000 1.000   NA
 3459863 3459864 AM1_1689 AM1_1690     TRUE 0.623 27.000 0.000 0.038   NA
 3459865 3459866 AM1_1691 AM1_1692 stpA   TRUE 0.487 49.000 0.000 1.000   NA
 3459866 3459867 AM1_1692 AM1_1693     FALSE 0.239 150.000 0.000 1.000   NA
 3459868 3459869 AM1_1694 AM1_1695     FALSE 0.183 146.000 0.000 NA   NA
 3459869 3459870 AM1_1695 AM1_1696     TRUE 0.564 4.000 0.000 NA   NA
 3459870 3459871 AM1_1696 AM1_1697     FALSE 0.389 -37.000 0.000 NA   NA
 3459871 3459872 AM1_1697 AM1_1698   lipA FALSE 0.214 133.000 0.000 1.000 N NA
 3459872 3459873 AM1_1698 AM1_1699 lipA   TRUE 0.443 27.000 0.000 NA   NA
 3459873 3459874 AM1_1699 AM1_1700     FALSE 0.140 182.000 0.000 NA   NA
 3459874 3459875 AM1_1700 AM1_1701     FALSE 0.372 59.000 0.000 NA   NA
 3459875 3459876 AM1_1701 AM1_1702     TRUE 0.656 342.000 0.017 1.000 Y NA
 3459878 3459879 AM1_1704 AM1_1705 cobS rne FALSE 0.045 489.000 0.000 1.000 N NA
 3459883 3459884 AM1_1709 AM1_1710     FALSE 0.365 62.000 0.000 NA   NA
 3459884 3459885 AM1_1710 AM1_1711     FALSE 0.193 181.000 0.000 1.000   NA
 3459886 3459887 AM1_1712 AM1_1713     TRUE 0.436 29.000 0.000 NA   NA
 3459887 3459888 AM1_1713 AM1_1714     FALSE 0.053 369.000 0.000 NA   NA
 3459888 3459889 AM1_1714 AM1_1715     TRUE 0.565 5.000 0.000 NA   NA
 3459889 3459890 AM1_1715 AM1_1716     FALSE 0.168 157.000 0.000 NA   NA
 3459891 3459892 AM1_6418 AM1_1717 rnpB rnc FALSE 0.339 71.000 0.000 NA   NA
 3459892 3459893 AM1_1717 AM1_1718 rnc ccsA FALSE 0.315 85.000 0.000 1.000 N NA
 3459900 3459901 AM1_1725 AM1_1726     TRUE 0.865 -13.000 0.000 0.031 Y NA
 3459901 3459902 AM1_1726 AM1_1727     TRUE 0.948 -3.000 0.143 1.000   NA
 3459902 3459903 AM1_1727 AM1_1728   trmE FALSE 0.044 786.000 0.000 1.000   NA
 3459904 3459905 AM1_1729 AM1_1730     FALSE 0.335 72.000 0.000 NA   NA
 3459905 3459906 AM1_1730 AM1_1731   speE TRUE 0.560 9.000 0.000 NA   NA
 3459906 3459907 AM1_1731 AM1_1732 speE   TRUE 0.910 20.000 0.019 NA   NA
 3459907 3459908 AM1_1732 AM1_1733   bioB FALSE 0.213 120.000 0.000 NA   NA
 3459913 3459914 AM1_1737 AM1_1739 folC   TRUE 0.450 33.000 0.000 1.000 N NA
 3459914 3459915 AM1_1739 AM1_1740     TRUE 0.953 0.000 0.550 NA   NA
 3459915 3459916 AM1_1740 AM1_1741     TRUE 0.904 67.000 1.000 NA   NA
 3459916 3459917 AM1_1741 AM1_1742     FALSE 0.039 509.000 0.000 NA   NA
 3459917 3459918 AM1_1742 AM1_1743     FALSE 0.082 256.000 0.000 NA   NA
 3459919 3459920 AM1_1744 AM1_1746   cytM FALSE 0.352 91.000 0.000 1.000   NA
 3459921 3459922 AM1_1745 AM1_1747     TRUE 0.954 12.000 0.625 NA   NA
 3459923 3459924 AM1_1748 AM1_1749     TRUE 0.519 -3.000 0.000 NA   NA
 3459925 3459926 AM1_1750 AM1_1751     FALSE 0.292 113.000 0.000 1.000   NA
 3459926 3459927 AM1_1751 AM1_1752   ispE FALSE 0.218 130.000 0.000 1.000 N NA
 3459927 3459928 AM1_1752 AM1_1753 ispE ksgA TRUE 0.875 49.000 0.007 1.000 N NA
 3459929 3459930 AM1_1754 AM1_1755     FALSE 0.075 274.000 0.000 NA   NA
 3459930 3459931 AM1_1755 AM1_1756     FALSE 0.153 170.000 0.000 NA   NA
 3459931 3459932 AM1_1756 AM1_1757     FALSE 0.166 158.000 0.000 NA   NA
 3459932 3459933 AM1_1757 AM1_1758     FALSE 0.098 226.000 0.000 NA   NA
 3459933 3459934 AM1_1758 AM1_1759     TRUE 0.822 34.000 0.000 1.000 Y NA
 3459934 3459935 AM1_1759 AM1_1760     TRUE 0.451 25.000 0.000 NA   NA
 3459935 3459936 AM1_1760 AM1_1761     FALSE 0.301 82.000 0.000 NA   NA
 3459936 3459937 AM1_1761 AM1_1762     FALSE 0.168 157.000 0.000 NA   NA
 3459937 3459938 AM1_1762 AM1_1763     FALSE 0.057 347.000 0.000 NA   NA
 3459938 3459939 AM1_1763 AM1_1764     FALSE 0.224 109.000 0.000 NA   NA
 3459939 3459940 AM1_1764 AM1_1765     TRUE 0.943 3.000 0.054 NA   NA
 3459940 3459941 AM1_1765 AM1_1766     FALSE 0.081 349.000 0.000 1.000   NA
 3459941 3459942 AM1_1766 AM1_1767     FALSE 0.232 121.000 0.000 1.000 N NA
 3459942 3459943 AM1_1767 AM1_1768     FALSE 0.075 275.000 0.000 NA   NA
 3459944 3459945 AM1_1769 AM1_1770     FALSE 0.067 297.000 0.000 NA   NA
 3459945 3459946 AM1_1770 AM1_1771     FALSE 0.103 220.000 0.000 NA   NA
 3459946 3459947 AM1_1771 AM1_1772     FALSE 0.238 101.000 0.000 NA   NA
 3459949 3459950 AM1_1774 AM1_1775     FALSE 0.034 611.000 0.000 NA   NA
 3459950 3459951 AM1_1775 AM1_1776     FALSE 0.177 150.000 0.000 NA   NA
 3459951 3459952 AM1_1776 AM1_1777     FALSE 0.132 191.000 0.000 NA   NA
 3459954 3459955 AM1_1778 AM1_1780     FALSE 0.035 583.000 0.000 NA   NA
 3459955 3459956 AM1_1780 AM1_1781     TRUE 0.451 25.000 0.000 NA   NA
 3459956 3459957 AM1_1781 AM1_1782     FALSE 0.242 111.000 0.000 1.000 N NA
 3459957 3459958 AM1_1782 AM1_1783   rbcS FALSE 0.117 217.000 0.000 1.000 N NA
 3459958 3459959 AM1_1783 AM1_1784 rbcS   TRUE 0.915 53.000 0.913 NA   NA
 3459959 3459960 AM1_1784 AM1_1785   rbcL TRUE 0.808 133.000 0.792 NA   NA
 3459962 3459963 AM1_1787 AM1_1788     FALSE 0.343 93.000 0.000 1.000   NA
 3459963 3459964 AM1_1788 AM1_1789   lnt FALSE 0.268 130.000 0.000 1.000   NA
 3459965 3459966 AM1_1790 AM1_1791     TRUE 0.894 62.000 0.148 NA   NA
 3459967 3459968 AM1_1792 AM1_1793 ion rpsJ TRUE 0.796 107.000 0.025 1.000   NA
 3459968 3459969 AM1_1793 AM1_1794 rpsJ tufB TRUE 0.907 145.000 0.318 1.000 Y NA
 3459969 3459970 AM1_1794 AM1_1795 tufB fusA TRUE 0.978 26.000 0.400 0.001 Y NA
 3459970 3459971 AM1_1795 AM1_1796 fusA rpsG TRUE 0.936 98.000 0.579 1.000 Y NA
 3459971 3459972 AM1_1796 AM1_1797 rpsG rpsL TRUE 0.875 210.000 0.620 0.002 Y NA
 3459972 3459973 AM1_1797 AM1_1798 rpsL   FALSE 0.301 82.000 0.000 NA   NA
 3459973 3459974 AM1_1798 AM1_1799   murB TRUE 0.745 132.000 0.030 NA   NA
 3459974 3459975 AM1_1799 AM1_1800 murB murC TRUE 0.981 -3.000 0.136 0.003 Y NA
 3459977 3459978 AM1_1802 AM1_1803     TRUE 0.437 -16.000 0.000 NA   NA
 3459979 3459980 AM1_1804 AM1_1805     FALSE 0.322 39.000 0.000 NA N NA
 3459980 3459981 AM1_1805 AM1_1806     FALSE 0.218 115.000 0.000 NA   NA
 3459981 3459982 AM1_1806 AM1_1808     FALSE 0.312 149.000 0.000 0.035   NA
 3459983 3459984 AM1_1807 AM1_1809   ccsB FALSE 0.293 84.000 0.000 NA   NA
 3459984 3459985 AM1_1809 AM1_1810 ccsB ccdA TRUE 0.965 34.000 0.371 NA Y NA
 3459985 3459986 AM1_1810 AM1_1811 ccdA   TRUE 0.910 51.000 0.202 1.000 N NA
 3459986 3459987 AM1_1811 AM1_1812     FALSE 0.295 110.000 0.000 1.000   NA
 3459989 3459990 AM1_1814 AM1_1815     FALSE 0.262 134.000 0.000 1.000   NA
 3459990 3459991 AM1_1815 AM1_1816     FALSE 0.391 50.000 0.000 NA   NA
 3459991 3459992 AM1_1816 AM1_1817     FALSE 0.363 -49.000 0.000 NA   NA
 3459992 3459993 AM1_1817 AM1_1818     FALSE 0.375 -45.000 0.000 NA   NA
 3459993 3459994 AM1_1818 AM1_1819     FALSE 0.050 386.000 0.000 NA   NA
 3459994 3459995 AM1_1819 AM1_1820     TRUE 0.892 3.000 0.000 1.000 Y NA
 3459995 3459996 AM1_1820 AM1_1821     TRUE 0.977 10.000 0.115 NA Y NA
 3459997 3459998 AM1_1822 AM1_1823     FALSE 0.165 159.000 0.000 NA   NA
 3459999 3460000 AM1_1824 AM1_1825     TRUE 0.897 68.000 0.111 1.000   NA
 3460006 3460007 AM1_1831 AM1_1832 synA dacB TRUE 0.547 -3.000 0.000 1.000 N NA
 3460008 3460009 AM1_1833 AM1_1834     FALSE 0.192 138.000 0.000 NA   NA
 3460009 3460010 AM1_1834 AM1_1835     FALSE 0.177 150.000 0.000 NA   NA
 3460013 3460014 AM1_1837 AM1_1839     FALSE 0.263 133.000 0.000 1.000   NA
 3460016 3460017 AM1_1841 AM1_1842   cobF FALSE 0.053 551.000 0.000 1.000   NA
 3460019 3460020 AM1_1843 AM1_1845     FALSE 0.381 54.000 0.000 NA   NA
 3460023 3460024 AM1_1848 AM1_1849     TRUE 0.589 3.000 0.000 1.000 N NA
 3460024 3460025 AM1_1849 AM1_1850     TRUE 0.886 0.000 0.000 1.000 Y NA
 3460026 3460027 AM1_1851 AM1_1852     FALSE 0.175 152.000 0.000 NA   NA
 3460027 3460028 AM1_1852 AM1_1853     FALSE 0.399 46.000 0.000 NA   NA
 3460028 3460029 AM1_1853 AM1_1854     FALSE 0.227 107.000 0.000 NA   NA
 3460032 3460033 AM1_1857 AM1_1858     TRUE 0.437 -16.000 0.000 NA   NA
 3460033 3460034 AM1_1858 AM1_1859     FALSE 0.227 107.000 0.000 NA   NA
 3460034 3460035 AM1_1859 AM1_1860     FALSE 0.227 107.000 0.000 NA   NA
 3460035 3460036 AM1_1860 AM1_1861     FALSE 0.426 -19.000 0.000 NA   NA
 3460037 3460038 AM1_1862 AM1_1863     TRUE 0.868 52.000 0.007 NA   NA
 3460039 3460040 AM1_1864 AM1_1865   ilvB TRUE 0.949 11.000 0.118 1.000 N NA
 3460040 3460041 AM1_1865 AM1_1866 ilvB   FALSE 0.162 161.000 0.000 NA   NA
 3460041 3460042 AM1_1866 AM1_1867   gauB TRUE 0.649 180.000 0.019 NA   NA
 3460042 3460043 AM1_1867 AM1_1868 gauB trx FALSE 0.105 276.000 0.000 1.000   NA
 3460043 3460044 AM1_1868 AM1_1869 trx   FALSE 0.166 158.000 0.000 NA   NA
 3460044 3460045 AM1_1869 AM1_1870     FALSE 0.065 310.000 0.000 NA   NA
 3460048 3460049 AM1_1873 AM1_1874     FALSE 0.138 184.000 0.000 NA   NA
 3460049 3460050 AM1_1874 AM1_1875     FALSE 0.051 381.000 0.000 NA   NA
 3460050 3460051 AM1_1875 AM1_1876     FALSE 0.111 211.000 0.000 NA   NA
 3460051 3460052 AM1_1876 AM1_1877     FALSE 0.034 618.000 0.000 NA   NA
 3460053 3460054 AM1_1878 AM1_1879     FALSE 0.216 118.000 0.000 NA   NA
 3460054 3460055 AM1_1879 AM1_1880     FALSE 0.033 632.000 0.000 NA   NA
 3460055 3460056 AM1_1880 AM1_1881     TRUE 0.438 37.000 0.000 1.000 N NA
 3460060 3460061 AM1_1885 AM1_1886     TRUE 0.939 -3.000 0.117 NA   NA
 3460062 3460063 AM1_1887 AM1_1888     FALSE 0.082 256.000 0.000 NA   NA
 3460063 3460064 AM1_1888 AM1_1889     FALSE 0.059 339.000 0.000 NA   NA
 3460065 3460066 AM1_1890 AM1_1891     TRUE 0.501 39.000 0.000 1.000   NA
 3460067 3460068 AM1_1892 AM1_1893     TRUE 0.439 28.000 0.000 NA   NA
 3460068 3460069 AM1_1893 AM1_1894     FALSE 0.235 118.000 0.000 1.000 N NA
 3460069 3460070 AM1_1894 AM1_1895     TRUE 0.528 30.000 0.000 1.000   NA
 3460070 3460071 AM1_1895 AM1_1896     TRUE 0.612 -3.000 0.000 1.000   NA
 3460071 3460072 AM1_1896 AM1_1897     TRUE 0.519 -3.000 0.000 NA   NA
 3460072 10702631 AM1_1897 AM1_1898     TRUE 0.564 4.000 0.000 NA   NA
 10702631 3460073 AM1_1898 AM1_1900     FALSE 0.035 593.000 0.000 NA   NA
 3460073 3460074 AM1_1900 AM1_1901     FALSE 0.291 114.000 0.000 1.000   NA
 3460074 3460075 AM1_1901 AM1_1902     TRUE 0.517 15.000 0.000 NA   NA
 3460075 3460076 AM1_1902 AM1_1903     TRUE 0.430 31.000 0.000 NA   NA
 3460076 3460077 AM1_1903 AM1_1904     FALSE 0.096 231.000 0.000 NA   NA
 3460077 3460078 AM1_1904 AM1_1905     FALSE 0.389 -37.000 0.000 NA   NA
 3460078 3460079 AM1_1905 AM1_1906     FALSE 0.055 355.000 0.000 NA   NA
 3460079 3460080 AM1_1906 AM1_1907     TRUE 0.546 25.000 0.000 1.000   NA
 3460080 3460081 AM1_1907 AM1_1908     TRUE 0.446 66.000 0.000 1.000   NA
 3460081 3460082 AM1_1908 AM1_1909     TRUE 0.564 21.000 0.000 1.000   NA
 3460082 3460083 AM1_1909 AM1_1910     TRUE 0.587 35.000 0.000 0.085   NA
 3460083 3460084 AM1_1910 AM1_1911     TRUE 0.983 11.000 0.667 1.000 Y NA
 3460084 3460085 AM1_1911 AM1_1912     FALSE 0.048 454.000 0.000 1.000 N NA
 3460085 3460086 AM1_1912 AM1_1913     FALSE 0.051 381.000 0.000 NA   NA
 3460086 3460087 AM1_1913 AM1_1914     FALSE 0.137 185.000 0.000 NA   NA
 3460087 3460088 AM1_1914 AM1_1915   asnB FALSE 0.070 287.000 0.000 NA   NA
 3460088 3460089 AM1_1915 AM1_1916 asnB   TRUE 0.469 21.000 0.000 NA   NA
 3460089 3460090 AM1_1916 AM1_1917     FALSE 0.379 -43.000 0.000 NA   NA
 3460090 3460091 AM1_1917 AM1_1918     FALSE 0.200 130.000 0.000 NA   NA
 3460091 3460092 AM1_1918 AM1_1919     TRUE 0.517 15.000 0.000 NA   NA
 3460092 3460093 AM1_1919 AM1_1920     FALSE 0.339 71.000 0.000 NA   NA
 3460093 3460094 AM1_1920 AM1_1921     TRUE 0.437 -16.000 0.000 NA   NA
 3460094 3460095 AM1_1921 AM1_1922     FALSE 0.184 189.000 0.000 1.000   NA
 3460097 3460098 AM1_1924 AM1_1925     FALSE 0.404 41.000 0.000 NA   NA
 3460098 3460099 AM1_1925 AM1_1926     TRUE 0.946 -3.000 0.333 NA   NA
 3460099 3460100 AM1_1926 AM1_1927     FALSE 0.148 174.000 0.000 NA   NA
 3460101 3460102 AM1_1928 AM1_1930   trmB FALSE 0.358 65.000 0.000 NA   NA
 3460103 3460104 AM1_1929 AM1_1931 glgC   FALSE 0.301 89.000 0.000 1.000 N NA
 3460106 3460107 AM1_1933 AM1_1934 rpsF   FALSE 0.109 172.000 0.000 NA N NA
 3460107 3460108 AM1_1934 AM1_1935     FALSE 0.119 202.000 0.000 NA   NA
 3460108 3460109 AM1_1935 AM1_1936     FALSE 0.217 116.000 0.000 NA   NA
 3460109 3460110 AM1_1936 AM1_1937     TRUE 0.762 146.000 0.118 NA   NA
 3460111 3460112 AM1_1938 AM1_1939 glyA   TRUE 0.782 138.000 0.137 1.000 N NA
 3460114 3460115 AM1_1941 AM1_1942 cinA   TRUE 0.619 181.000 0.004 NA   NA
 3460115 3460116 AM1_1942 AM1_1943   aroQ TRUE 0.790 141.000 0.333 NA   NA
 3460116 3460117 AM1_1943 AM1_1944 aroQ   FALSE 0.291 114.000 0.000 1.000   NA
 3460117 3460118 AM1_1944 AM1_1945     FALSE 0.273 127.000 0.000 1.000   NA
 3460118 3460119 AM1_1945 AM1_1946   rimI TRUE 0.499 40.000 0.000 1.000   NA
 3460119 3460120 AM1_1946 AM1_1947 rimI clpC TRUE 0.598 229.000 0.032 1.000   NA
 3460120 3460121 AM1_1947 AM1_1948 clpC   FALSE 0.325 82.000 0.000 1.000 N NA
 3460121 3460122 AM1_1948 AM1_1949     FALSE 0.127 195.000 0.000 NA   NA
 3460122 3460123 AM1_1949 AM1_1950   rlpA FALSE 0.284 87.000 0.000 NA   NA
 3460124 3460125 AM1_1951 AM1_1952     FALSE 0.046 427.000 0.000 NA   NA
 3460128 3460129 AM1_1955 AM1_1956     TRUE 0.482 19.000 0.000 NA   NA
 3460129 3460130 AM1_1956 AM1_1957     FALSE 0.256 95.000 0.000 NA   NA
 3460130 3460131 AM1_1957 AM1_1958   thiS TRUE 0.905 143.000 0.219 1.000 Y NA
 3460131 3460132 AM1_1958 AM1_1959 thiS hemH TRUE 0.509 183.000 0.000 1.000 Y NA
 3460133 3460134 AM1_1960 AM1_1961     FALSE 0.281 94.000 0.000 1.000 N NA
 3460135 3460136 AM1_1962 AM1_1963 ccp   TRUE 0.575 0.000 0.000 1.000 N NA
 3460136 3460137 AM1_1963 AM1_1964     FALSE 0.074 277.000 0.000 NA   NA
 3460137 3460138 AM1_1964 AM1_1965     TRUE 0.548 0.000 0.000 NA   NA
 3460138 3460139 AM1_1965 AM1_1966     FALSE 0.177 150.000 0.000 NA   NA
 3460140 3460141 AM1_1967 AM1_1968     TRUE 0.469 21.000 0.000 NA   NA
 3460144 3460145 AM1_1971 AM1_1972     FALSE 0.418 34.000 0.000 NA   NA
 3460145 3460146 AM1_1972 AM1_1973     FALSE 0.231 155.000 0.000 1.000   NA
 3460146 3460147 AM1_1973 AM1_1974     FALSE 0.222 111.000 0.000 NA   NA
 3460147 3460148 AM1_1974 AM1_1975     TRUE 0.529 14.000 0.000 NA   NA
 3460148 3460149 AM1_1975 AM1_1976     FALSE 0.322 75.000 0.000 NA   NA
 3460149 3460150 AM1_1976 AM1_1978     FALSE 0.211 122.000 0.000 NA   NA
 3460151 3460152 AM1_1977 AM1_1979     FALSE 0.259 94.000 0.000 NA   NA
 3460152 3460153 AM1_1979 AM1_1980     FALSE 0.124 198.000 0.000 NA   NA
 3460153 3460154 AM1_1980 AM1_1981     FALSE 0.075 275.000 0.000 NA   NA
 3460154 3460155 AM1_1981 AM1_1982     TRUE 0.930 16.000 0.054 NA   NA
 3460156 3460157 AM1_1983 AM1_1984 ribC   FALSE 0.100 224.000 0.000 NA   NA
 3460157 3460158 AM1_1984 AM1_1986     FALSE 0.380 55.000 0.000 NA   NA
 3460159 3460160 AM1_1985 AM1_1987     FALSE 0.342 125.000 0.000 0.084   NA
 3460160 3460161 AM1_1987 AM1_1988     TRUE 0.958 0.000 0.446 1.000   NA
 3460161 3460162 AM1_1988 AM1_1989     FALSE 0.206 125.000 0.000 NA   NA
 3460162 3460163 AM1_1989 AM1_1990     FALSE 0.148 174.000 0.000 NA   NA
 3460163 3460164 AM1_1990 AM1_1991     FALSE 0.033 662.000 0.000 NA   NA
 3460164 3460165 AM1_1991 AM1_1992     FALSE 0.041 480.000 0.000 NA   NA
 3460166 3460167 AM1_1993 AM1_1994     FALSE 0.200 130.000 0.000 NA   NA
 3460167 3460168 AM1_1994 AM1_1995     TRUE 0.437 -16.000 0.000 NA   NA
 3460168 3460169 AM1_1995 AM1_1997     FALSE 0.411 -25.000 0.000 NA   NA
 3460170 3460171 AM1_1998 AM1_1999     TRUE 0.430 31.000 0.000 NA   NA
 3460174 3460175 AM1_2002 AM1_2003     FALSE 0.284 87.000 0.000 NA   NA
 3460175 3460176 AM1_2003 AM1_2004     FALSE 0.342 70.000 0.000 NA   NA
 3460177 3460178 AM1_2005 AM1_2006     FALSE 0.418 34.000 0.000 NA   NA
 3460178 3460179 AM1_2006 AM1_2007     FALSE 0.421 -21.000 0.000 NA   NA
 3460179 3460180 AM1_2007 AM1_2008     TRUE 0.519 -3.000 0.000 NA   NA
 3460182 3460183 AM1_2009 AM1_2011     FALSE 0.083 340.000 0.000 1.000   NA
 3460183 3460184 AM1_2011 AM1_2012     TRUE 0.649 10.000 0.000 1.000   NA
 3460186 3460187 AM1_2014 AM1_2015 proA   TRUE 0.443 27.000 0.000 NA   NA
 3460188 3460189 AM1_2016 AM1_2017     FALSE 0.407 76.000 0.000 1.000   NA
 3460193 3460194 AM1_2021 AM1_2022   glgA FALSE 0.185 156.000 0.000 1.000 N NA
 3460194 3460195 AM1_2022 AM1_2023 glgA   FALSE 0.091 312.000 0.000 1.000   NA
 3460196 3460197 AM1_2024 AM1_2025 psbM   TRUE 0.766 160.000 0.139 1.000   NA
 3460199 3460200 AM1_2027 AM1_2028 rimM avtA TRUE 0.883 35.000 0.005 1.000 N NA
 3460202 3460203 AM1_2030 AM1_2031     TRUE 0.482 19.000 0.000 NA   NA
 3460203 3460204 AM1_2031 AM1_2032     FALSE 0.399 46.000 0.000 NA   NA
 3460204 3460205 AM1_2032 AM1_2033     FALSE 0.274 90.000 0.000 NA   NA
 3460205 3460206 AM1_2033 AM1_2034     TRUE 0.933 -3.000 0.054 NA   NA
 3460208 3460209 AM1_2035 AM1_2037     FALSE 0.197 132.000 0.000 NA   NA
 3460211 3460212 AM1_2039 AM1_2040     TRUE 0.560 9.000 0.000 NA   NA
 3460212 3460213 AM1_2040 AM1_2041     FALSE 0.418 34.000 0.000 NA   NA
 3460213 3460214 AM1_2041 AM1_2042     FALSE 0.219 114.000 0.000 NA   NA
 3460214 3460215 AM1_2042 AM1_2043   topA FALSE 0.142 180.000 0.000 NA   NA
 3460220 3460221 AM1_2048 AM1_2049 panB hisH FALSE 0.274 96.000 0.000 1.000 N NA
 3460221 3460222 AM1_2049 AM1_2050 hisH   TRUE 0.564 6.000 0.000 NA   NA
 3460222 3460223 AM1_2050 AM1_2051     TRUE 0.548 0.000 0.000 NA   NA
 3460224 3460225 AM1_2052 AM1_2053 petG   FALSE 0.057 1800.000 0.000 0.045   NA
 3460225 3460226 AM1_2053 AM1_2054     FALSE 0.195 149.000 0.000 1.000 N NA
 3460226 3460227 AM1_2054 AM1_2055     FALSE 0.035 588.000 0.000 NA   NA
 3460230 3460231 AM1_2058 AM1_2059   galE FALSE 0.200 130.000 0.000 NA   NA
 3460231 3460232 AM1_2059 AM1_2060 galE   TRUE 0.963 53.000 0.250 1.000 Y NA
 3460233 3460234 AM1_2061 AM1_2062 thrA   FALSE 0.381 54.000 0.000 NA   NA
 3460234 3460235 AM1_2062 AM1_2063     FALSE 0.228 106.000 0.000 NA   NA
 3460235 3460236 AM1_2063 AM1_2064     FALSE 0.193 137.000 0.000 NA   NA
 3460237 3460238 AM1_2065 AM1_2066     FALSE 0.041 481.000 0.000 NA   NA
 3460240 3460241 AM1_2068 AM1_2069   serS FALSE 0.113 167.000 0.000 NA N NA
 3460241 3460242 AM1_2069 AM1_2070 serS sppA FALSE 0.105 232.000 0.000 1.000 N NA
 3460242 3460243 AM1_2070 AM1_2071 sppA   TRUE 0.564 4.000 0.000 NA   NA
 3460243 3460244 AM1_2071 AM1_2072     FALSE 0.127 195.000 0.000 NA   NA
 3460247 3460248 AM1_2075 AM1_2076     FALSE 0.252 96.000 0.000 NA   NA
 3460249 3460250 AM1_2077 AM1_2078     TRUE 0.890 42.000 0.033 NA   NA
 3460251 3460252 AM1_2079 AM1_2080 appC   TRUE 0.986 8.000 0.738 0.022 Y NA
 3460252 3460253 AM1_2080 AM1_2081     TRUE 0.985 0.000 0.619 0.022 Y NA
 3460253 3460254 AM1_2081 AM1_2082     FALSE 0.110 212.000 0.000 NA   NA
 3460254 3460255 AM1_2082 AM1_2083     FALSE 0.098 228.000 0.000 NA   NA
 3460255 3460256 AM1_2083 AM1_2084     FALSE 0.041 539.000 0.000 1.000 N NA
 3460256 3460257 AM1_2084 AM1_2085   ccp TRUE 0.850 72.000 0.014 1.000 N NA
 3460257 3460258 AM1_2085 AM1_2086 ccp   FALSE 0.141 181.000 0.000 NA   NA
 3460258 3460259 AM1_2086 AM1_2087     FALSE 0.245 98.000 0.000 NA   NA
 3460260 3460261 AM1_2088 AM1_2089     FALSE 0.032 693.000 0.000 NA   NA
 3460262 3460263 AM1_2090 AM1_2091   gnd FALSE 0.322 75.000 0.000 NA   NA
 3460264 3460265 AM1_2092 AM1_2093     FALSE 0.169 156.000 0.000 NA   NA
 3460265 3460266 AM1_2093 AM1_2094     FALSE 0.289 116.000 0.000 1.000   NA
 3460268 3460269 AM1_2096 AM1_2098     TRUE 0.929 26.000 0.333 NA   NA
 3460270 3460271 AM1_2097 AM1_2099     FALSE 0.120 159.000 0.000 NA N NA
 3460271 3460272 AM1_2099 AM1_2100     TRUE 0.945 15.000 0.303 NA   NA
 3460273 3460274 AM1_2101 AM1_2102     TRUE 0.565 5.000 0.000 NA   NA
 3460275 3460276 AM1_2103 AM1_2104 malQ   TRUE 0.532 16.000 0.000 1.000 N NA
 3460277 3460278 AM1_2105 AM1_2106     FALSE 0.288 86.000 0.000 NA   NA
 3460278 3460279 AM1_2106 AM1_2107     TRUE 0.473 -9.000 0.000 NA   NA
 3460281 3460282 AM1_2109 AM1_2111 rpoD   FALSE 0.156 225.000 0.000 0.039 N NA
 3460283 3460284 AM1_2110 AM1_2112     TRUE 0.519 -3.000 0.000 NA   NA
 3460284 3460285 AM1_2112 AM1_2113     FALSE 0.370 60.000 0.000 NA   NA
 3460285 3460286 AM1_2113 AM1_2114   glgP TRUE 0.488 18.000 0.000 NA   NA
 3460287 3460288 AM1_2115 AM1_2116 msrB   FALSE 0.193 136.000 0.000 NA   NA
 3460288 3460289 AM1_2116 AM1_2117     FALSE 0.400 44.000 0.000 NA   NA
 3460289 3460290 AM1_2117 AM1_2118   ilvN TRUE 0.903 56.000 0.065 1.000   NA
 3460291 3460292 AM1_2119 AM1_2120   psbX FALSE 0.044 445.000 0.000 NA   NA
 3460294 3460295 AM1_2122 AM1_2124 accC rplT FALSE 0.032 2514.000 0.000 1.000 N NA
 3460295 3460296 AM1_2124 AM1_2123 rplT rpmI TRUE 0.958 84.000 0.928 0.009 Y NA
 3460298 3460299 AM1_2126 AM1_2127 nuoM nuoL TRUE 0.965 -73.000 0.151 0.002 Y NA
 3460300 3460301 AM1_2128 AM1_2129     FALSE 0.090 242.000 0.000 NA   NA
 3460301 3460302 AM1_2129 AM1_2130   ftsH FALSE 0.060 333.000 0.000 NA   NA
 3460302 3460303 AM1_2130 AM1_2131 ftsH   FALSE 0.236 152.000 0.000 1.000   NA
 3460303 3460304 AM1_2131 AM1_2132     FALSE 0.190 140.000 0.000 NA   NA
 3460304 3460305 AM1_2132 AM1_2133     FALSE 0.043 450.000 0.000 NA   NA
 3460305 3460306 AM1_2133 AM1_2134     TRUE 0.443 67.000 0.000 1.000   NA
 3460306 3460307 AM1_2134 AM1_2136     FALSE 0.077 363.000 0.000 1.000   NA
 3460308 3460309 AM1_2135 AM1_2137 mdh   TRUE 0.889 41.000 0.029 NA   NA
 3460309 3460310 AM1_2137 AM1_2138     TRUE 0.519 -3.000 0.000 NA   NA
 3460311 3460312 AM1_2139 AM1_2140     FALSE 0.065 309.000 0.000 NA   NA
 3460312 3460313 AM1_2140 AM1_2141     FALSE 0.103 221.000 0.000 NA   NA
 3460313 3460314 AM1_2141 AM1_2142     TRUE 0.556 1.000 0.000 NA   NA
 3460314 3460315 AM1_2142 AM1_2143     FALSE 0.415 35.000 0.000 NA   NA
 3460315 3460316 AM1_2143 AM1_2144     FALSE 0.401 43.000 0.000 NA   NA
 3460316 3460317 AM1_2144 AM1_2145     FALSE 0.216 118.000 0.000 NA   NA
 3460319 3460320 AM1_2147 AM1_2148     TRUE 0.956 38.000 0.019 1.000 Y NA
 3460320 3460321 AM1_2148 AM1_2149     TRUE 0.968 42.000 0.588 1.000 Y NA
 3460321 3460322 AM1_2149 AM1_2150     TRUE 0.680 305.000 0.015 1.000 Y NA
 3460324 3460325 AM1_2152 AM1_2153     FALSE 0.235 103.000 0.000 NA   NA
 3460327 3460328 AM1_2155 AM1_2156   sixA TRUE 0.548 0.000 0.000 NA   NA
 3460328 3460329 AM1_2156 AM1_2157 sixA gltA TRUE 0.860 87.000 0.171 1.000 N NA
 3460329 3460330 AM1_2157 AM1_2158 gltA ndhA TRUE 0.889 156.000 0.137 1.000 Y NA
 3460330 3460331 AM1_2158 AM1_2159 ndhA ndhI TRUE 0.962 72.000 0.242 0.005 Y NA
 3460331 3460332 AM1_2159 AM1_2160 ndhI ndhG TRUE 0.985 4.000 0.192 0.005 Y NA
 3460332 3460333 AM1_2160 AM1_2161 ndhG ndhE TRUE 0.973 45.000 0.506 0.002 Y NA
 3460333 3460334 AM1_2161 AM1_2162 ndhE   FALSE 0.382 83.000 0.000 1.000   NA
 3460334 3460335 AM1_2162 AM1_2163   uvrA TRUE 0.457 62.000 0.000 1.000   NA
 3460335 3460336 AM1_2163 AM1_2164 uvrA   FALSE 0.287 118.000 0.000 1.000   NA
 3460336 3460337 AM1_2164 AM1_2165     TRUE 0.655 4.000 0.000 1.000   NA
 3460338 3460339 AM1_2166 AM1_2167 psbA   TRUE 0.725 142.000 0.003 1.000   NA
 3460339 3460340 AM1_2167 AM1_2168     FALSE 0.186 143.000 0.000 NA   NA
 3460341 3460342 AM1_2169 AM1_2170     FALSE 0.277 124.000 0.000 1.000   NA
 3460342 3460343 AM1_2170 AM1_2171     TRUE 0.738 148.000 0.039 1.000 N NA
 3460344 3460345 AM1_2172 AM1_2173 purD   TRUE 0.429 71.000 0.000 1.000   NA
 3460345 3460346 AM1_2173 AM1_2174     TRUE 0.898 45.000 0.062 NA   NA
 3460350 3460351 AM1_2178 AM1_2179     FALSE 0.230 165.000 0.000 0.099 N NA
 3460354 3460355 AM1_2182 AM1_2183 gidA   FALSE 0.399 46.000 0.000 NA   NA
 3460355 3460356 AM1_2183 AM1_2184     FALSE 0.346 69.000 0.000 NA   NA
 3460356 3460357 AM1_2184 AM1_2185   algI FALSE 0.178 149.000 0.000 NA   NA
 3460357 3460358 AM1_2185 AM1_2186 algI   TRUE 0.862 87.000 0.250 NA   NA
 3460358 3460359 AM1_2186 AM1_2187     FALSE 0.374 58.000 0.000 NA   NA
 3460359 3460360 AM1_2187 AM1_2188   rfbF FALSE 0.146 176.000 0.000 NA   NA
 3460360 3460361 AM1_2188 AM1_2189 rfbF   TRUE 0.982 0.000 0.624 1.000 Y NA
 3460361 3460362 AM1_2189 AM1_2190   rfbC TRUE 0.958 34.000 0.021 1.000 Y NA
 3460362 3460363 AM1_2190 AM1_2191 rfbC   TRUE 0.874 -3.000 0.000 1.000 Y NA
 3460363 3460364 AM1_2191 AM1_2192     FALSE 0.304 81.000 0.000 NA   NA
 3460364 3460365 AM1_2192 AM1_2193     FALSE 0.116 205.000 0.000 NA   NA
 3460365 3460366 AM1_2193 AM1_2194   kdsB TRUE 0.971 -3.000 0.020 1.000 Y NA
 3460366 3460367 AM1_2194 AM1_2195 kdsB kdsA TRUE 0.977 -3.000 0.032 0.025 Y NA
 3460367 3460368 AM1_2195 AM1_2196 kdsA kdsC TRUE 0.944 0.000 0.032 1.000   NA
 3460368 3460369 AM1_2196 AM1_2197 kdsC   TRUE 0.664 23.000 0.000 0.003   NA
 3460369 3460370 AM1_2197 AM1_2198     TRUE 0.718 87.000 0.000 1.000 Y NA
 3460370 3460371 AM1_2198 AM1_2199     FALSE 0.247 107.000 0.000 1.000 N NA
 3460371 3460372 AM1_2199 AM1_2200     FALSE 0.175 163.000 0.000 1.000 N NA
 3460372 3460373 AM1_2200 AM1_2202     FALSE 0.341 77.000 0.000 1.000 N NA
 3460374 3460375 AM1_2201 AM1_2203     FALSE 0.141 181.000 0.000 NA   NA
 3460377 3460378 AM1_2205 AM1_2206     FALSE 0.045 437.000 0.000 NA   NA
 3460378 3460379 AM1_2206 AM1_2207     FALSE 0.352 67.000 0.000 NA   NA
 3460379 3460380 AM1_2207 AM1_2208     FALSE 0.170 155.000 0.000 NA   NA
 3460380 3460381 AM1_2208 AM1_2209     FALSE 0.124 198.000 0.000 NA   NA
 3460381 3460382 AM1_2209 AM1_2210     FALSE 0.326 97.000 0.000 1.000   NA
 3460383 3460384 AM1_2211 AM1_2212     FALSE 0.056 350.000 0.000 NA   NA
 3460385 3460386 AM1_2213 AM1_2214     FALSE 0.031 776.000 0.000 NA   NA
 3460386 3460387 AM1_2214 AM1_2215     FALSE 0.109 214.000 0.000 NA   NA
 3460387 3460388 AM1_2215 AM1_2216   rfc FALSE 0.221 112.000 0.000 NA   NA
 3460388 3460389 AM1_2216 AM1_2217 rfc   TRUE 0.472 6.000 0.000 NA N NA
 3460390 3460391 AM1_2218 AM1_2219     FALSE 0.133 190.000 0.000 NA   NA
 3460391 3460392 AM1_2219 AM1_2220     FALSE 0.097 229.000 0.000 NA   NA
 3460394 3460395 AM1_2222 AM1_2223     FALSE 0.127 195.000 0.000 NA   NA
 3460395 3460396 AM1_2223 AM1_2224     TRUE 0.938 -10.000 1.000 NA   NA
 3460398 3460399 AM1_2226 AM1_2227     FALSE 0.049 401.000 0.000 NA   NA
 3460399 3460400 AM1_2227 AM1_2228     TRUE 0.929 31.000 0.791 NA   NA
 3460400 3460401 AM1_2228 AM1_2229     TRUE 0.961 10.000 0.660 1.000   NA
 3460401 3460402 AM1_2229 AM1_2230     TRUE 0.920 71.000 0.623 0.058   NA
 3460402 3460403 AM1_2230 AM1_2232   thiL TRUE 0.960 0.000 0.944 1.000   NA
 3460404 3460405 AM1_2231 AM1_2233     FALSE 0.407 39.000 0.000 NA   NA
 3460405 3460406 AM1_2233 AM1_2234     TRUE 0.548 0.000 0.000 NA   NA
 3460406 3460407 AM1_2234 AM1_2235     TRUE 0.547 12.000 0.000 NA   NA
 3460407 3460408 AM1_2235 AM1_2236     TRUE 0.433 30.000 0.000 NA   NA
 3460408 3460409 AM1_2236 AM1_2237     TRUE 0.972 41.000 0.564 0.090 Y NA
 3460412 3460413 AM1_2240 AM1_2241     FALSE 0.071 282.000 0.000 NA   NA
 3460413 3460414 AM1_2241 AM1_2242     FALSE 0.368 61.000 0.000 NA   NA
 3460415 3460416 AM1_2243 AM1_2244     FALSE 0.204 127.000 0.000 NA   NA
 3460417 3460418 AM1_2245 AM1_2246     FALSE 0.350 74.000 0.000 1.000 N NA
 3460418 3460419 AM1_2246 AM1_2247     FALSE 0.333 34.000 0.000 NA N NA
 3460419 3460420 AM1_2247 AM1_2248     TRUE 0.428 -3.000 0.000 NA N NA
 3460420 3460421 AM1_2248 AM1_2249     FALSE 0.399 45.000 0.000 NA   NA
 3460421 3460422 AM1_2249 AM1_2251   grxC FALSE 0.335 72.000 0.000 NA   NA
 3460423 3460424 AM1_2250 AM1_2252     FALSE 0.075 274.000 0.000 NA   NA
 3460427 3460428 AM1_2255 AM1_2256     FALSE 0.072 279.000 0.000 NA   NA
 3460429 3460430 AM1_2257 AM1_2258     FALSE 0.360 -85.000 0.000 NA   NA
 3460430 3460431 AM1_2258 AM1_2259     TRUE 0.517 15.000 0.000 NA   NA
 3460432 3460433 AM1_2260 AM1_2261     FALSE 0.103 220.000 0.000 NA   NA
 3460433 3460434 AM1_2261 AM1_2263     FALSE 0.248 97.000 0.000 NA   NA
 3460436 3460437 AM1_2264 AM1_2265 rpoZ   TRUE 0.924 -3.000 0.021 NA   NA
 3460437 3460438 AM1_2265 AM1_2266     TRUE 0.954 10.000 0.357 NA   NA
 3460438 3460439 AM1_2266 AM1_2267     FALSE 0.422 33.000 0.000 NA   NA
 3460439 3460440 AM1_2267 AM1_2269     FALSE 0.175 152.000 0.000 NA   NA
 3460440 3460441 AM1_2269 AM1_2270     TRUE 0.562 3.000 0.000 NA   NA
 3460441 3460442 AM1_2270 AM1_2271     FALSE 0.120 201.000 0.000 NA   NA
 3460442 3460443 AM1_2271 AM1_2272     TRUE 0.538 13.000 0.000 NA   NA
 3460443 3460444 AM1_2272 AM1_2273     FALSE 0.200 130.000 0.000 NA   NA
 3460447 3460448 AM1_2276 AM1_2277     FALSE 0.360 64.000 0.000 NA   NA
 3460448 3460449 AM1_2277 AM1_2278     FALSE 0.029 1265.000 0.000 NA   NA
 3460449 3460450 AM1_2278 AM1_2279     FALSE 0.411 -25.000 0.000 NA   NA
 3460451 3460452 AM1_2280 AM1_2281     FALSE 0.316 77.000 0.000 NA   NA
 3460453 3460454 AM1_2282 AM1_2283 glgC glpX TRUE 0.743 79.000 0.000 1.000 Y NA
 3460454 3460455 AM1_2283 AM1_2284 glpX   FALSE 0.281 88.000 0.000 NA   NA
 3460455 3460456 AM1_2284 AM1_2285     FALSE 0.038 519.000 0.000 NA   NA
 3460456 10702632 AM1_2285 AM1_2286     TRUE 0.565 5.000 0.000 NA   NA
 3460457 3460458 AM1_2287 AM1_2288     FALSE 0.050 388.000 0.000 NA   NA
 3460458 3460459 AM1_2288 AM1_2289     FALSE 0.041 487.000 0.000 NA   NA
 3460461 3460462 AM1_2291 AM1_2292   dnaX FALSE 0.043 461.000 0.000 NA   NA
 3460463 3460464 AM1_2293 AM1_2294     FALSE 0.124 210.000 0.000 1.000 N NA
 3460464 3460465 AM1_2294 AM1_2295   acsF FALSE 0.209 170.000 0.000 1.000   NA
 3460467 3460468 AM1_2297 AM1_2298     FALSE 0.240 100.000 0.000 NA   NA
 3460468 3460469 AM1_2298 AM1_2299     TRUE 0.564 6.000 0.000 NA   NA
 3460470 3460471 AM1_2300 AM1_2301     FALSE 0.233 104.000 0.000 NA   NA
 3460471 3460472 AM1_2301 AM1_2302     TRUE 0.732 192.000 0.048 0.002   NA
 3460472 3460473 AM1_2302 AM1_2303     FALSE 0.297 83.000 0.000 NA   NA
 3460473 3460474 AM1_2303 AM1_2304     TRUE 0.519 -3.000 0.000 NA   NA
 3460474 3460475 AM1_2304 AM1_2305     FALSE 0.046 430.000 0.000 NA   NA
 3460476 3460477 AM1_2306 AM1_2307   ppa FALSE 0.238 151.000 0.000 1.000   NA
 3460477 3460478 AM1_2307 AM1_2308 ppa   FALSE 0.050 392.000 0.000 NA   NA
 3460482 3460483 AM1_2312 AM1_2313     TRUE 0.932 1.000 0.016 NA   NA
 3460483 3460484 AM1_2313 AM1_2314   metG TRUE 0.777 105.000 0.027 NA   NA
 3460484 3460485 AM1_2314 AM1_2315 metG   FALSE 0.240 159.000 0.000 0.098 N NA
 3460485 3460486 AM1_2315 AM1_2316     FALSE 0.164 160.000 0.000 NA   NA
 3460486 3460487 AM1_2316 AM1_2317     FALSE 0.322 75.000 0.000 NA   NA
 3460487 3460488 AM1_2317 AM1_2318     TRUE 0.961 52.000 0.500 NA Y NA
 3460491 3460492 AM1_2321 AM1_2322 proS   FALSE 0.066 303.000 0.000 NA   NA
 3460492 3460493 AM1_2322 AM1_2323     FALSE 0.130 192.000 0.000 NA   NA
 3460497 3460498 AM1_2327 AM1_2328     FALSE 0.407 39.000 0.000 NA   NA
 3460498 3460499 AM1_2328 AM1_2329     FALSE 0.228 106.000 0.000 NA   NA
 3460500 3460501 AM1_2330 AM1_2331 clpP clpP TRUE 0.974 45.000 0.745 0.001 Y NA
 3460502 3460503 AM1_2332 AM1_2333     TRUE 0.547 -3.000 0.000 1.000 N NA
 3460504 3460505 AM1_2334 AM1_2335     TRUE 0.937 16.000 0.143 NA   NA
 3460507 3460508 AM1_2337 AM1_2338     TRUE 0.598 16.000 0.000 1.000   NA
 3460508 3460509 AM1_2338 AM1_2339     TRUE 0.746 137.000 0.037 NA   NA
 3460510 3460511 AM1_2340 AM1_2341 rpoD sfsA FALSE 0.190 140.000 0.000 NA   NA
 3460511 3460512 AM1_2341 AM1_2343 sfsA   FALSE 0.192 138.000 0.000 NA   NA
 3460513 3460514 AM1_2342 AM1_2344   exsB TRUE 0.867 66.000 0.005 1.000   NA
 3460517 3460518 AM1_2347 AM1_2348     FALSE 0.355 66.000 0.000 NA   NA
 3460520 3460521 AM1_2350 AM1_2351     FALSE 0.224 109.000 0.000 NA   NA
 3460521 3460522 AM1_2351 AM1_2352     TRUE 0.457 62.000 0.000 1.000   NA
 3460522 3460523 AM1_2352 AM1_2353     FALSE 0.213 88.000 0.000 NA N NA
 3460523 3460524 AM1_2353 AM1_2354     TRUE 0.969 -10.000 0.202 NA Y NA
 3460524 3460525 AM1_2354 AM1_2355     FALSE 0.095 232.000 0.000 NA   NA
 3460526 3460527 AM1_2356 AM1_2357   kmo FALSE 0.038 511.000 0.000 NA   NA
 3460527 3460528 AM1_2357 AM1_2358 kmo panD TRUE 0.696 93.000 0.000 1.000 Y NA
 3460529 3460530 AM1_2359 AM1_2360     TRUE 0.945 -3.000 0.273 NA   NA
 3460530 3460531 AM1_2360 AM1_2361   moxR TRUE 0.932 -3.000 0.047 NA   NA
 3460531 3460532 AM1_2361 AM1_2362 moxR   TRUE 0.948 -3.000 0.648 NA   NA
 3460532 3460533 AM1_2362 AM1_2363     FALSE 0.342 70.000 0.000 NA   NA
 3460533 3460534 AM1_2363 AM1_2364     FALSE 0.091 239.000 0.000 NA   NA
 3460534 3460535 AM1_2364 AM1_2365     FALSE 0.130 192.000 0.000 NA   NA
 3460535 3460536 AM1_2365 AM1_2366   tuaD TRUE 0.926 107.000 0.291 1.000 Y NA
 3460537 3460538 AM1_2367 AM1_2368     FALSE 0.192 138.000 0.000 NA   NA
 3460541 3460542 AM1_2371 AM1_2372     FALSE 0.224 109.000 0.000 NA   NA
 3460544 3460545 AM1_2374 AM1_2375   glmS TRUE 0.547 -3.000 0.000 1.000 N NA
 3460548 3460549 AM1_2378 AM1_2379     TRUE 0.490 48.000 0.000 1.000   NA
 3460549 3460550 AM1_2379 AM1_2380     FALSE 0.339 94.000 0.000 1.000   NA
 3460551 3460552 AM1_2381 AM1_2382     TRUE 0.451 25.000 0.000 NA   NA
 3460552 3460553 AM1_2382 AM1_2383   nrd FALSE 0.181 147.000 0.000 NA   NA
 3460553 3460554 AM1_2383 AM1_2385 nrd nrdE FALSE 0.415 35.000 0.000 NA   NA
 3460555 3460556 AM1_2384 AM1_2386 pgp cruP FALSE 0.217 116.000 0.000 NA   NA
 3460556 3460557 AM1_2386 AM1_2387 cruP   FALSE 0.325 37.000 0.000 NA N NA
 3460557 3460558 AM1_2387 AM1_2388     FALSE 0.035 583.000 0.000 NA   NA
 3460559 3460560 AM1_2389 AM1_2390     FALSE 0.211 122.000 0.000 NA   NA
 3460560 3460561 AM1_2390 AM1_2391   phkA FALSE 0.105 218.000 0.000 NA   NA
 3460562 3460563 AM1_2392 AM1_2393   tpm FALSE 0.378 84.000 0.000 1.000   NA
 3460563 3460564 AM1_2393 AM1_2394 tpm nmrA TRUE 0.622 14.000 0.000 1.000   NA
 3460564 3460565 AM1_2394 AM1_2395 nmrA   FALSE 0.191 139.000 0.000 NA   NA
 3460565 3460566 AM1_2395 AM1_2396     FALSE 0.040 490.000 0.000 NA   NA
 3460566 3460567 AM1_2396 AM1_2397     TRUE 0.504 74.000 0.000 0.028   NA
 3460567 3460568 AM1_2397 AM1_2398     FALSE 0.394 -34.000 0.000 NA   NA
 3460573 3460574 AM1_2403 AM1_2404     TRUE 0.879 -6.000 0.000 0.089 Y NA
 10702633 3460577 AM1_2407 AM1_2409     FALSE 0.031 722.000 0.000 NA   NA
 3460577 3460578 AM1_2409 AM1_2410     FALSE 0.402 42.000 0.000 NA   NA
 3460578 3460579 AM1_2410 AM1_2411     TRUE 0.461 23.000 0.000 NA   NA
 3460579 3460580 AM1_2411 AM1_2412     TRUE 0.917 26.000 0.087 NA   NA
 3460580 3460581 AM1_2412 AM1_2413   tktA FALSE 0.060 332.000 0.000 NA   NA
 3460581 3460582 AM1_2413 AM1_2414 tktA adk FALSE 0.106 231.000 0.000 1.000 N NA
 3460584 3460585 AM1_2416 AM1_2417   cysK FALSE 0.183 190.000 0.000 1.000   NA
 3460585 3460586 AM1_2417 AM1_2418 cysK   TRUE 0.874 73.000 0.235 NA N NA
 3460586 3460587 AM1_2418 AM1_2419   pilD FALSE 0.164 113.000 0.000 NA N NA
 3460587 3460588 AM1_2419 AM1_2420 pilD   TRUE 0.749 131.000 0.033 NA   NA
 3460589 3460590 AM1_2421 AM1_2422   phhB FALSE 0.396 48.000 0.000 NA   NA
 3460590 3460591 AM1_2422 AM1_2423 phhB gidB TRUE 0.484 24.000 0.000 1.000 N NA
 3460592 3460593 AM1_2424 AM1_2425     FALSE 0.067 297.000 0.000 NA   NA
 3460594 3460595 AM1_2426 AM1_2427     FALSE 0.061 326.000 0.000 NA   NA
 3460596 3460597 AM1_2428 AM1_2429 phrB   TRUE 0.589 3.000 0.000 1.000 N NA
 3460597 3460598 AM1_2429 AM1_2430     FALSE 0.177 150.000 0.000 NA   NA
 3460598 3460599 AM1_2430 AM1_2431     FALSE 0.047 424.000 0.000 NA   NA
 3460599 3460600 AM1_2431 AM1_2432     FALSE 0.274 90.000 0.000 NA   NA
 3460600 3460601 AM1_2432 AM1_2433     TRUE 0.905 -28.000 0.109 NA   NA
 3460601 3460602 AM1_2433 AM1_2434     TRUE 0.451 25.000 0.000 NA   NA
 3460604 3460605 AM1_2436 AM1_2437 ftsH   FALSE 0.386 82.000 0.000 1.000   NA
 3460605 3460606 AM1_2437 AM1_2438     FALSE 0.102 279.000 0.000 1.000   NA
 3460607 3460608 AM1_2439 AM1_2440   dnaK FALSE 0.111 211.000 0.000 NA   NA
 3460608 3460609 AM1_2440 AM1_2441 dnaK   FALSE 0.065 432.000 0.000 1.000   NA
 3460611 3460612 AM1_2443 AM1_2444   thiD FALSE 0.190 140.000 0.000 NA   NA
 3460612 3460613 AM1_2444 AM1_2445 thiD   FALSE 0.052 372.000 0.000 NA   NA
 3460613 3460614 AM1_2445 AM1_2446     FALSE 0.168 157.000 0.000 NA   NA
 3460614 3460615 AM1_2446 AM1_2448     TRUE 0.481 -7.000 0.000 NA   NA
 3460616 3460617 AM1_2447 AM1_2449     FALSE 0.225 108.000 0.000 NA   NA
 3460617 3460618 AM1_2449 AM1_2450     FALSE 0.240 100.000 0.000 NA   NA
 3460618 3460619 AM1_2450 AM1_2451     FALSE 0.231 105.000 0.000 NA   NA
 3460620 3460621 AM1_2452 AM1_2453     TRUE 0.524 31.000 0.000 1.000   NA
 3460622 3460623 AM1_2454 AM1_2455     FALSE 0.203 128.000 0.000 NA   NA
 3460623 3460624 AM1_2455 AM1_2456     FALSE 0.171 154.000 0.000 NA   NA
 3460625 3460626 AM1_2457 AM1_2458 psaA psaB TRUE 0.948 23.000 0.154 0.001   NA
 3460627 3460628 AM1_2459 AM1_2460     TRUE 0.564 6.000 0.000 NA   NA
 3460628 3460629 AM1_2460 AM1_2461     FALSE 0.426 32.000 0.000 NA   NA
 3460630 3460631 AM1_2462 AM1_2463     FALSE 0.219 86.000 0.000 NA N NA
 3460631 3460632 AM1_2463 AM1_2464     FALSE 0.032 1128.000 0.000 1.000 N