MicrobesOnline Operon Predictions for Streptococcus pyogenes MGAS6180

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 924176 924177 M28_Spy0001 M28_Spy0002 dnaA dnaN TRUE 0.728 155.000 0.328 1.000 Y NA
 924177 924178 M28_Spy0002 M28_Spy0003 dnaN   FALSE 0.318 75.000 0.009 NA   NA
 924178 924179 M28_Spy0003 M28_Spy0004     FALSE 0.077 330.000 0.064 NA   NA
 924179 924180 M28_Spy0004 M28_Spy0005   pth TRUE 0.963 25.000 0.184 1.000 Y NA
 924180 924181 M28_Spy0005 M28_Spy0006 pth trcF TRUE 0.941 3.000 0.137 1.000 N NA
 924181 924182 M28_Spy0006 M28_Spy0007 trcF   FALSE 0.178 162.000 0.024 1.000 N NA
 924182 924183 M28_Spy0007 M28_Spy0008   divIC TRUE 0.889 -13.000 0.053 1.000 N NA
 924183 924184 M28_Spy0008 M28_Spy0009 divIC   TRUE 0.913 -3.000 0.011 NA   NA
 924184 924185 M28_Spy0009 M28_Spy0010     TRUE 0.931 13.000 0.132 NA   NA
 924185 924186 M28_Spy0010 M28_Spy0011   tilS TRUE 0.902 -3.000 0.014 1.000 N NA
 924186 924187 M28_Spy0011 M28_Spy0012 tilS hpt TRUE 0.972 5.000 0.067 0.064 N NA
 924187 924188 M28_Spy0012 M28_Spy0013 hpt ftsH TRUE 0.897 22.000 0.192 1.000 N NA
 924188 924189 M28_Spy0013 M28_Spy0014 ftsH   FALSE 0.072 258.000 0.009 1.000 N NA
 924191 924192 M28_SpyR0001 M28_SpyT0001     TRUE 0.640 -246.000 0.000 NA   NA
 924192 924193 M28_SpyT0001 M28_SpyR0002     FALSE 0.034 296.000 0.000 NA   NA
 924193 924194 M28_SpyR0002 M28_SpyR0003     FALSE 0.158 85.000 0.000 NA   NA
 924194 924195 M28_SpyR0003 M28_SpyT0002     TRUE 0.755 18.000 0.000 NA   NA
 924195 924196 M28_SpyT0002 M28_SpyT0003     TRUE 0.755 18.000 0.000 NA   NA
 924196 924197 M28_SpyT0003 M28_SpyT0004     TRUE 0.567 32.000 0.000 NA   NA
 924197 924198 M28_SpyT0004 M28_SpyT0005     TRUE 0.837 6.000 0.000 NA   NA
 924198 924199 M28_SpyT0005 M28_SpyT0006     TRUE 0.821 11.000 0.000 NA   NA
 924199 924200 M28_SpyT0006 M28_SpyT0007     TRUE 0.801 13.000 0.000 NA   NA
 924200 924201 M28_SpyT0007 M28_SpyT0008     TRUE 0.831 9.000 0.000 NA   NA
 924201 924202 M28_SpyT0008 M28_SpyT0009     TRUE 0.765 17.000 0.000 NA   NA
 924202 924203 M28_SpyT0009 M28_SpyT0010     TRUE 0.842 4.000 0.000 NA   NA
 924203 924204 M28_SpyT0010 M28_SpyR0004     FALSE 0.118 144.000 0.000 NA   NA
 924204 924205 M28_SpyR0004 M28_SpyT0011     TRUE 0.640 -246.000 0.000 NA   NA
 924205 924206 M28_SpyT0011 M28_SpyR0005     FALSE 0.034 296.000 0.000 NA   NA
 924206 924207 M28_SpyR0005 M28_SpyR0006     FALSE 0.158 85.000 0.000 NA   NA
 924207 924208 M28_SpyR0006 M28_SpyT0012     TRUE 0.755 18.000 0.000 NA   NA
 924208 924209 M28_SpyT0012 M28_SpyT0013     TRUE 0.755 18.000 0.000 NA   NA
 924209 924210 M28_SpyT0013 M28_SpyT0014     TRUE 0.567 32.000 0.000 NA   NA
 924210 924211 M28_SpyT0014 M28_SpyT0015     TRUE 0.837 6.000 0.000 NA   NA
 924211 924212 M28_SpyT0015 M28_SpyT0016     TRUE 0.821 11.000 0.000 NA   NA
 924212 924213 M28_SpyT0016 M28_SpyT0017     TRUE 0.801 13.000 0.000 NA   NA
 924213 924214 M28_SpyT0017 M28_SpyT0018     TRUE 0.831 9.000 0.000 NA   NA
 924214 924215 M28_SpyT0018 M28_SpyT0019     TRUE 0.765 17.000 0.000 NA   NA
 924215 924216 M28_SpyT0019 M28_SpyT0020     TRUE 0.842 4.000 0.000 NA   NA
 924216 924217 M28_SpyT0020 M28_SpyT0021     TRUE 0.837 6.000 0.000 NA   NA
 924217 924218 M28_SpyT0021 M28_SpyT0022     TRUE 0.709 21.000 0.000 NA   NA
 924218 924219 M28_SpyT0022 M28_SpyT0024     FALSE 0.124 122.000 0.000 NA   NA
 924219 924220 M28_SpyT0024 M28_SpyT0025     TRUE 0.709 21.000 0.000 NA   NA
 924220 924221 M28_SpyT0025 M28_SpyT0026     TRUE 0.801 13.000 0.000 NA   NA
 924221 924222 M28_SpyT0026 M28_SpyT0027     TRUE 0.535 35.000 0.000 NA   NA
 924222 924223 M28_SpyT0027 M28_SpyT0028     TRUE 0.827 10.000 0.000 NA   NA
 924223 924224 M28_SpyT0028 M28_Spy0017   sibA FALSE 0.014 1180.000 0.000 NA   NA
 924224 924225 M28_Spy0017 M28_Spy0018 sibA prsA FALSE 0.153 241.000 0.107 NA   NA
 924225 924226 M28_Spy0018 M28_Spy0019 prsA recO FALSE 0.062 186.000 0.000 1.000 N NA
 924226 924227 M28_Spy0019 M28_Spy0020 recO plsX FALSE 0.208 103.000 0.011 1.000 N NA
 924227 924228 M28_Spy0020 M28_Spy0021 plsX acpP.1 TRUE 0.992 -7.000 0.017 0.009 Y NA
 924228 924229 M28_Spy0021 M28_Spy0022 acpP.1 purC FALSE 0.205 121.000 0.017 1.000 N NA
 924229 924230 M28_Spy0022 M28_Spy0023 purC purL TRUE 0.684 76.000 0.043 1.000 Y NA
 924230 924231 M28_Spy0023 M28_Spy0024 purL purF TRUE 0.578 104.000 0.024 1.000 Y NA
 924231 924232 M28_Spy0024 M28_Spy0025 purF purM TRUE 0.966 28.000 0.248 1.000 Y NA
 924232 924233 M28_Spy0025 M28_Spy0026 purM purN TRUE 0.868 168.000 0.238 0.003 Y NA
 924233 924234 M28_Spy0026 M28_Spy0027 purN purH TRUE 0.611 184.000 0.225 1.000 Y NA
 924236 924237 M28_Spy0029 M28_Spy0030 purD purE TRUE 0.519 158.000 0.044 1.000 Y NA
 924237 924238 M28_Spy0030 M28_Spy0031 purE purK TRUE 0.984 -49.000 0.002 0.002 Y NA
 924238 924239 M28_Spy0031 M28_Spy0032 purK   TRUE 0.713 -31.000 0.000 NA   NA
 924239 924240 M28_Spy0032 M28_Spy0033   purB TRUE 0.727 20.000 0.000 NA   NA
 924240 924241 M28_Spy0033 M28_Spy0034 purB   FALSE 0.207 131.000 0.005 1.000   NA
 924241 924242 M28_Spy0034 M28_Spy0035   ruvB FALSE 0.174 154.000 0.002 1.000   NA
 924242 924243 M28_Spy0035 M28_Spy0036 ruvB   FALSE 0.170 138.000 0.005 1.000 N NA
 924243 924244 M28_Spy0036 M28_Spy0037     TRUE 0.827 23.000 0.019 NA   NA
 924244 924245 M28_Spy0037 M28_Spy0038     TRUE 0.977 -3.000 0.351 NA   NA
 924245 924246 M28_Spy0038 M28_Spy0039     FALSE 0.023 309.000 0.000 1.000 N NA
 924246 924247 M28_Spy0039 M28_Spy0040   adhA FALSE 0.375 252.000 0.012 0.002   NA
 924247 924248 M28_Spy0040 M28_Spy0041 adhA   FALSE 0.024 388.000 0.000 1.000   NA
 924248 924249 M28_Spy0041 M28_Spy0042   rpsJ FALSE 0.056 199.000 0.000 1.000 N NA
 924249 924250 M28_Spy0042 M28_Spy0043 rpsJ rplC TRUE 0.799 248.000 0.467 0.043 Y NA
 924250 924251 M28_Spy0043 M28_Spy0044 rplC rplD TRUE 0.995 24.000 0.544 0.033 Y NA
 924251 924252 M28_Spy0044 M28_Spy0045 rplD rplW TRUE 0.997 0.000 0.307 0.033 Y NA
 924252 924253 M28_Spy0045 M28_Spy0046 rplW rplB TRUE 0.998 18.000 0.849 0.037 Y NA
 924253 924254 M28_Spy0046 M28_Spy0047 rplB rpsS TRUE 0.958 140.000 0.820 0.043 Y NA
 924254 924255 M28_Spy0047 M28_Spy0048 rpsS rplV TRUE 0.998 16.000 0.769 0.043 Y NA
 924255 924256 M28_Spy0048 M28_Spy0049 rplV rpsC TRUE 0.998 13.000 0.719 0.043 Y NA
 924256 924257 M28_Spy0049 M28_Spy0050 rpsC rplP TRUE 0.999 4.000 0.828 0.043 Y NA
 924257 924258 M28_Spy0050 M28_Spy0051 rplP rpmC TRUE 0.999 10.000 0.802 0.033 Y NA
 924258 924259 M28_Spy0051 M28_Spy0052 rpmC rpsQ TRUE 0.997 26.000 0.828 0.033 Y NA
 924259 924260 M28_Spy0052 M28_Spy0053 rpsQ rplN TRUE 0.996 25.000 0.791 0.043 Y NA
 924260 924261 M28_Spy0053 M28_Spy0054 rplN rplX TRUE 0.972 79.000 0.810 0.043 Y NA
 924261 924262 M28_Spy0054 M28_Spy0055 rplX rplE TRUE 0.997 24.000 0.758 0.033 Y NA
 924262 924263 M28_Spy0055 M28_Spy0056 rplE rpsN TRUE 0.997 16.000 0.496 0.033 Y NA
 924263 924264 M28_Spy0056 M28_Spy0057 rpsN rpsH TRUE 0.912 151.000 0.473 0.033 Y NA
 924264 924265 M28_Spy0057 M28_Spy0058 rpsH rplF TRUE 0.929 203.000 0.808 0.033 Y NA
 924265 924266 M28_Spy0058 M28_Spy0059 rplF rplR TRUE 0.964 105.000 0.815 0.033 Y NA
 924266 924267 M28_Spy0059 M28_Spy0060 rplR rpsE TRUE 0.998 19.000 0.814 0.043 Y NA
 924267 924268 M28_Spy0060 M28_Spy0061 rpsE rpmD TRUE 0.998 15.000 0.789 0.043 Y NA
 924268 924269 M28_Spy0061 M28_Spy0062 rpmD rplO TRUE 0.919 215.000 0.653 0.005 Y NA
 924269 924270 M28_Spy0062 M28_Spy0063 rplO secY TRUE 0.984 17.000 0.730 1.000 N NA
 924270 924271 M28_Spy0063 M28_Spy0064 secY adk FALSE 0.390 150.000 0.241 1.000 N NA
 924271 924272 M28_Spy0064 M28_Spy0065 adk infA FALSE 0.353 64.000 0.007 1.000 N NA
 924272 924273 M28_Spy0065 M28_Spy0066 infA rpmJ TRUE 0.938 26.000 0.020 1.000 Y NA
 924273 924274 M28_Spy0066 M28_Spy0067 rpmJ rpsM TRUE 0.988 18.000 0.086 0.033 Y NA
 924274 924275 M28_Spy0067 M28_Spy0068 rpsM rpsK TRUE 0.998 18.000 0.810 0.033 Y NA
 924275 924276 M28_Spy0068 M28_Spy0069 rpsK rpoA TRUE 0.814 46.000 0.308 1.000 N NA
 924276 924277 M28_Spy0069 M28_Spy0070 rpoA rplQ TRUE 0.989 15.000 0.873 1.000 N NA
 924279 924280 M28_SpyR0007 M28_SpyT0029     TRUE 0.640 -246.000 0.000 NA   NA
 924280 924281 M28_SpyT0029 M28_SpyR0008     FALSE 0.034 296.000 0.000 NA   NA
 924281 924282 M28_SpyR0008 M28_SpyR0009     FALSE 0.158 85.000 0.000 NA   NA
 924282 924283 M28_SpyR0009 M28_SpyT0030     TRUE 0.755 18.000 0.000 NA   NA
 924283 924284 M28_SpyT0030 M28_SpyT0031     TRUE 0.837 6.000 0.000 NA   NA
 924284 924285 M28_SpyT0031 M28_SpyT0032     TRUE 0.535 35.000 0.000 NA   NA
 924285 924286 M28_SpyT0032 M28_SpyT0033     TRUE 0.679 23.000 0.000 NA   NA
 924286 924287 M28_SpyT0033 M28_SpyT0035     FALSE 0.128 110.000 0.000 NA   NA
 924287 924288 M28_SpyT0035 M28_SpyT0036     TRUE 0.709 21.000 0.000 NA   NA
 924288 924289 M28_SpyT0036 M28_SpyT0037     TRUE 0.727 20.000 0.000 NA   NA
 924289 924290 M28_SpyT0037 M28_SpyT0038     TRUE 0.834 7.000 0.000 NA   NA
 924290 924291 M28_SpyT0038 M28_SpyT0039     TRUE 0.813 12.000 0.000 NA   NA
 924291 924292 M28_SpyT0039 M28_SpyT0040     TRUE 0.831 9.000 0.000 NA   NA
 924292 924293 M28_SpyT0040 M28_SpyT0041     TRUE 0.727 20.000 0.000 NA   NA
 924293 924294 M28_SpyT0041 M28_Spy0072     FALSE 0.046 260.000 0.000 NA   NA
 924294 924295 M28_Spy0072 M28_Spy0073     FALSE 0.016 638.000 0.000 NA   NA
 924295 924296 M28_Spy0073 M28_Spy0074     TRUE 0.912 40.000 0.009 0.002   NA
 924296 924297 M28_Spy0074 M28_Spy0075   adcR FALSE 0.225 110.000 0.008 1.000   NA
 924297 924298 M28_Spy0075 M28_Spy0076 adcR adcC TRUE 0.954 4.000 0.192 1.000 N NA
 924298 924299 M28_Spy0076 M28_Spy0077 adcC adcB TRUE 0.992 -46.000 0.673 1.000 Y NA
 924300 924301 M28_Spy0078 M28_Spy0079   tyrS TRUE 0.434 51.000 0.004 1.000 N NA
 924302 924303 M28_Spy0080 M28_Spy0081 pbp1b rpoB FALSE 0.034 264.000 0.000 1.000 N NA
 924303 924304 M28_Spy0081 M28_Spy0082 rpoB rpoC TRUE 0.979 91.000 0.851 0.002 Y NA
 924304 924305 M28_Spy0082 M28_Spy0083 rpoC   FALSE 0.193 152.000 0.007 NA   NA
 924305 924306 M28_Spy0083 M28_Spy0084   comYA FALSE 0.337 93.000 0.083 NA   NA
 924306 924307 M28_Spy0084 M28_Spy0085 comYA comYB TRUE 0.989 -121.000 0.639 1.000 Y NA
 924307 924308 M28_Spy0085 M28_Spy0086 comYB comYC TRUE 0.999 2.000 0.861 0.002 Y NA
 924308 924309 M28_Spy0086 M28_Spy0087 comYC   TRUE 0.968 -25.000 0.110 NA Y NA
 924309 924310 M28_Spy0087 M28_Spy0088     TRUE 0.982 -43.000 0.786 NA   NA
 924310 924311 M28_Spy0088 M28_Spy0089   comYD TRUE 0.963 -7.000 0.250 NA   NA
 924311 924312 M28_Spy0089 M28_Spy0090 comYD   TRUE 0.949 -16.000 0.232 NA   NA
 924312 924313 M28_Spy0090 M28_Spy0091     TRUE 0.598 53.000 0.087 NA   NA
 924313 924314 M28_Spy0091 M28_Spy0092   ackA TRUE 0.534 59.000 0.130 1.000 N NA
 924314 924315 M28_Spy0092 M28_Spy0093 ackA   FALSE 0.081 187.000 0.000 NA   NA
 924316 924317 M28_Spy0094 M28_Spy0095 proC pepA TRUE 0.567 48.000 0.041 1.000 N NA
 924317 924318 M28_Spy0095 M28_Spy0096 pepA   FALSE 0.312 110.000 0.100 NA   NA
 924319 924320 M28_Spy0097 M28_Spy0098   trx.1 TRUE 0.948 -3.000 0.140 NA   NA
 924320 924321 M28_Spy0098 M28_Spy0099 trx.1   TRUE 0.946 18.000 0.239 1.000   NA
 924321 924322 M28_Spy0099 M28_Spy0100   ssb FALSE 0.239 152.000 0.034 1.000   NA
 924323 924324 M28_Spy0101 M28_Spy0102     TRUE 0.793 -28.000 0.005 1.000 N NA
 924324 924325 M28_Spy0102 M28_Spy0103     TRUE 0.793 -85.000 0.034 1.000 N NA
 924325 924326 M28_Spy0103 M28_Spy0104   rofA FALSE 0.185 147.000 0.003 NA   NA
 924327 924328 M28_Spy0105 M28_Spy0106 sfb1   FALSE 0.037 288.000 0.000 NA   NA
 924328 924329 M28_Spy0106 M28_Spy0107   cpa FALSE 0.038 286.000 0.000 NA   NA
 924329 924330 M28_Spy0107 M28_Spy0108 cpa   TRUE 0.923 -7.000 0.061 NA   NA
 924330 924331 M28_Spy0108 M28_Spy0109     TRUE 0.931 7.000 0.061 NA   NA
 924331 924332 M28_Spy0109 M28_Spy0110   eftLSL.B TRUE 0.986 1.000 0.500 NA   NA
 924332 924333 M28_Spy0110 M28_Spy0111 eftLSL.B   TRUE 0.986 -55.000 1.000 NA   NA
 924339 924340 M28_Spy0117 M28_Spy0118   atoD.2 TRUE 0.960 -45.000 0.100 1.000 Y NA
 924340 924341 M28_Spy0118 M28_Spy0119 atoD.2   TRUE 0.995 3.000 0.200 0.052 Y NA
 924343 924344 M28_Spy0121 M28_Spy0122   sloR TRUE 0.650 37.000 0.016 NA N NA
 924344 924345 M28_Spy0122 M28_Spy0123 sloR   FALSE 0.018 451.000 0.000 NA   NA
 924345 924346 M28_Spy0123 M28_Spy0124   ntpI TRUE 0.905 -10.000 0.029 NA   NA
 924346 924347 M28_Spy0124 M28_Spy0125 ntpI ntpK TRUE 0.998 2.000 0.848 0.004   NA
 924347 924348 M28_Spy0125 M28_Spy0126 ntpK ntpE TRUE 0.775 68.000 0.045 0.006   NA
 924348 924349 M28_Spy0126 M28_Spy0127 ntpE ntpC TRUE 0.978 16.000 0.097 0.006   NA
 924349 924350 M28_Spy0127 M28_Spy0128 ntpC ntpF TRUE 0.998 -3.000 0.487 0.001 Y NA
 924350 924351 M28_Spy0128 M28_Spy0129 ntpF ntpA TRUE 0.890 201.000 0.462 0.004 Y NA
 924351 924352 M28_Spy0129 M28_Spy0130 ntpA ntpB TRUE 0.999 1.000 0.776 0.004 Y NA
 924352 924353 M28_Spy0130 M28_Spy0131 ntpB ntpD TRUE 0.992 24.000 0.238 0.004 Y NA
 924354 924355 M28_Spy0132 M28_Spy0133     TRUE 0.991 13.000 0.818 NA   NA
 924356 924357 M28_Spy0134 M28_Spy0135 purA   FALSE 0.139 327.000 0.000 0.021   NA
 924357 924358 M28_Spy0135 M28_Spy0136   nusG FALSE 0.109 158.000 0.000 1.000   NA
 924358 924359 M28_Spy0136 M28_Spy0137 nusG nga FALSE 0.027 362.000 0.000 1.000   NA
 924359 924360 M28_Spy0137 M28_Spy0138 nga   TRUE 0.972 5.000 0.286 1.000   NA
 924360 924361 M28_Spy0138 M28_Spy0139   slo TRUE 0.924 15.000 0.125 1.000   NA
 924361 924362 M28_Spy0139 M28_Spy0140 slo   FALSE 0.049 255.000 0.000 NA   NA
 924363 924364 M28_Spy0141 M28_Spy0142     FALSE 0.021 411.000 0.000 NA   NA
 924364 924365 M28_Spy0142 M28_Spy0143     FALSE 0.093 175.000 0.000 NA   NA
 924366 924367 M28_Spy0144 M28_Spy0145 metB leuS FALSE 0.050 212.000 0.000 1.000 N NA
 924367 924368 M28_Spy0145 M28_Spy0146 leuS   FALSE 0.033 307.000 0.000 1.000   NA
 924368 924369 M28_Spy0146 M28_Spy0147     TRUE 0.887 71.000 0.431 0.023   NA
 924369 924370 M28_Spy0147 M28_Spy0148     TRUE 0.885 123.000 0.279 0.017 Y NA
 924370 924371 M28_Spy0148 M28_Spy0149     TRUE 0.768 109.000 0.328 1.000 Y NA
 924371 924372 M28_Spy0149 M28_Spy0150     TRUE 0.989 -37.000 0.536 1.000 Y NA
 924372 924373 M28_Spy0150 M28_Spy0151   araD TRUE 0.997 2.000 0.700 1.000 Y NA
 924373 924374 M28_Spy0151 M28_Spy0152 araD   FALSE 0.297 58.000 0.000 NA   NA
 924374 924375 M28_Spy0152 M28_Spy0153     FALSE 0.123 121.000 0.000 NA   NA
 924375 924376 M28_Spy0153 M28_Spy0154     FALSE 0.221 253.000 0.231 NA   NA
 924376 924377 M28_Spy0154 M28_Spy0155   opuAA FALSE 0.018 487.000 0.000 NA   NA
 924377 924378 M28_Spy0155 M28_Spy0156 opuAA opuABC TRUE 0.990 16.000 0.177 0.088 Y NA
 924378 924379 M28_Spy0156 M28_Spy0157 opuABC polA FALSE 0.164 131.000 0.003 1.000 N NA
 924379 924380 M28_Spy0157 M28_Spy0158 polA   FALSE 0.137 187.000 0.005 NA   NA
 924380 924381 M28_Spy0158 M28_Spy0159   perR TRUE 0.505 52.000 0.010 NA   NA
 924381 924382 M28_Spy0159 M28_Spy0160 perR vlg FALSE 0.106 157.000 0.000 NA   NA
 924382 924383 M28_Spy0160 M28_Spy0161 vlg   FALSE 0.060 222.000 0.000 NA   NA
 924383 924384 M28_Spy0161 M28_Spy0162     TRUE 0.823 -7.000 0.000 1.000   NA
 924385 924386 M28_Spy0163 M28_Spy0164     TRUE 0.845 40.000 0.000 0.012   NA
 924386 924387 M28_Spy0164 M28_Spy0165     FALSE 0.136 103.000 0.000 NA   NA
 924387 924388 M28_Spy0165 M28_Spy0166     TRUE 0.553 33.000 0.000 NA   NA
 924388 924389 M28_Spy0166 M28_Spy0167     FALSE 0.136 78.000 0.000 NA N NA
 924391 924392 M28_Spy0169 M28_Spy0170     TRUE 0.968 21.000 0.000 0.079 Y NA
 924392 924393 M28_Spy0170 M28_Spy0171     FALSE 0.234 68.000 0.000 NA   NA
 924394 924395 M28_Spy0172 M28_Spy0173   tgt TRUE 0.840 -3.000 0.000 NA   NA
 924395 924396 M28_Spy0173 M28_Spy0174 tgt   FALSE 0.110 217.000 0.004 1.000   NA
 924396 924397 M28_Spy0174 M28_Spy0175     TRUE 0.929 4.000 0.039 NA   NA
 924397 924398 M28_Spy0175 M28_Spy0176     FALSE 0.245 143.000 0.033 NA   NA
 924398 924399 M28_Spy0176 M28_Spy0177     TRUE 0.960 -24.000 0.013 0.021   NA
 924401 924402 M28_Spy0179 M28_Spy0180   speG FALSE 0.051 251.000 0.000 NA   NA
 924402 924403 M28_Spy0180 M28_Spy0181 speG   FALSE 0.158 85.000 0.000 NA   NA
 924403 924404 M28_Spy0181 M28_Spy0182     TRUE 0.523 36.000 0.000 NA   NA
 924404 924405 M28_Spy0182 M28_Spy0183   pgi FALSE 0.142 97.000 0.000 NA   NA
 924407 924408 M28_Spy0185 M28_Spy0186     TRUE 0.616 28.000 0.000 NA   NA
 924409 924410 M28_Spy0187 M28_Spy0188 hasC.2 gpsA TRUE 0.720 27.000 0.007 1.000 N NA
 924411 924412 M28_Spy0189 M28_Spy0190     TRUE 0.917 -7.000 0.080 1.000 N NA
 924412 924413 M28_Spy0190 M28_Spy0191     TRUE 0.999 0.000 0.720 0.009 Y NA
 924413 924414 M28_Spy0191 M28_Spy0192     FALSE 0.220 118.000 0.010 NA   NA
 924414 924415 M28_Spy0192 M28_Spy0193     FALSE 0.207 110.000 0.005 NA   NA
 924415 924416 M28_Spy0193 M28_Spy0194   radA FALSE 0.283 81.000 0.028 1.000 N NA
 924416 924417 M28_Spy0194 M28_Spy0195 radA   FALSE 0.125 186.000 0.009 1.000 N NA
 924417 924418 M28_Spy0195 M28_Spy0196     TRUE 0.511 95.000 0.278 NA   NA
 924418 924419 M28_Spy0196 M28_Spy0197   gltX FALSE 0.154 183.000 0.008 NA   NA
 924419 924420 M28_Spy0197 M28_Spy0198 gltX fasB FALSE 0.016 395.000 0.000 1.000 N NA
 924420 924421 M28_Spy0198 M28_Spy0199 fasB fasC TRUE 0.997 -3.000 0.750 NA Y NA
 924421 924422 M28_Spy0199 M28_Spy0200 fasC fasA TRUE 0.996 4.000 0.571 NA Y NA
 924422 924423 M28_Spy0200 M28_Spy0201 fasA fasX FALSE 0.012 540.000 0.000 1.000 N NA
 924423 924424 M28_Spy0201 M28_Spy0202 fasX   TRUE 0.839 -34.000 0.052 1.000 N NA
 924424 924425 M28_Spy0202 M28_Spy0203     TRUE 0.933 12.000 0.106 1.000   NA
 924425 924426 M28_Spy0203 M28_Spy0204     FALSE 0.158 85.000 0.000 NA   NA
 924426 924427 M28_Spy0204 M28_Spy0205   rpmH FALSE 0.131 108.000 0.000 NA   NA
 924427 924428 M28_Spy0205 M28_Spy0206 rpmH   FALSE 0.044 274.000 0.000 1.000   NA
 924428 924429 M28_Spy0206 M28_Spy0207     TRUE 0.956 49.000 0.500 1.000 Y NA
 924429 924430 M28_Spy0207 M28_Spy0208     TRUE 0.993 1.000 0.133 0.044 Y NA
 924430 924431 M28_Spy0208 M28_Spy0209     TRUE 0.999 13.000 1.000 0.044 Y NA
 924431 924432 M28_Spy0209 M28_Spy0210     FALSE 0.106 157.000 0.000 NA   NA
 924432 924433 M28_Spy0210 M28_Spy0211   nanH TRUE 0.982 12.000 0.500 NA   NA
 924433 924434 M28_Spy0211 M28_Spy0212 nanH   TRUE 0.857 22.000 0.108 1.000 N NA
 924436 924437 M28_Spy0214 M28_Spy0215 tatD   TRUE 0.953 -49.000 0.058 NA Y NA
 924437 924438 M28_Spy0215 M28_Spy0216   ksgA FALSE 0.312 90.000 0.093 1.000 N NA
 924438 924439 M28_Spy0216 M28_Spy0217 ksgA   FALSE 0.035 424.000 0.003 1.000   NA
 924439 924440 M28_Spy0217 M28_Spy0218   rpe TRUE 0.961 10.000 0.213 1.000   NA
 924440 924441 M28_Spy0218 M28_Spy0219 rpe   TRUE 0.938 -7.000 0.166 1.000 N NA
 924441 924442 M28_Spy0219 M28_Spy0220     TRUE 0.930 2.000 0.030 NA   NA
 924442 924443 M28_Spy0220 M28_Spy0221   cbf TRUE 0.905 -10.000 0.030 NA   NA
 924443 924444 M28_Spy0221 M28_Spy0222 cbf purR FALSE 0.108 267.000 0.052 1.000   NA
 924444 924445 M28_Spy0222 M28_Spy0223 purR prgA TRUE 0.857 -27.000 0.017 NA   NA
 924445 924446 M28_Spy0223 M28_Spy0224 prgA rpsL FALSE 0.132 208.000 0.012 NA   NA
 924446 924447 M28_Spy0224 M28_Spy0225 rpsL rpsG TRUE 0.993 21.000 0.224 0.006 Y NA
 924447 924448 M28_Spy0225 M28_Spy0226 rpsG fus TRUE 0.536 367.000 0.579 1.000 Y NA
 924448 924449 M28_Spy0226 M28_Spy0227 fus plr FALSE 0.023 321.000 0.000 1.000 N NA
 924450 924451 M28_Spy0228 M28_Spy0229     FALSE 0.246 142.000 0.032 NA   NA
 924451 924452 M28_Spy0229 M28_Spy0230     TRUE 0.992 -76.000 0.758 1.000 Y NA
 924453 924454 M28_Spy0231 M28_Spy0232     TRUE 0.937 -3.000 0.071 NA   NA
 924454 924455 M28_Spy0232 M28_Spy0233   bacA TRUE 0.512 66.000 0.118 NA   NA
 924455 924456 M28_Spy0233 M28_Spy0234 bacA mecA FALSE 0.278 140.000 0.132 NA N NA
 924456 924457 M28_Spy0234 M28_Spy0235 mecA   TRUE 0.963 7.000 0.267 NA N NA
 924457 924458 M28_Spy0235 M28_Spy0236   rgpG TRUE 0.716 -30.000 0.000 NA   NA
 924458 924459 M28_Spy0236 M28_Spy0237 rgpG   TRUE 0.627 27.000 0.000 NA   NA
 924459 924460 M28_Spy0237 M28_Spy0238     TRUE 0.664 95.000 0.139 1.000 Y NA
 924460 924461 M28_Spy0238 M28_Spy0239   nifS3 TRUE 0.954 31.000 0.606 1.000 N NA
 924461 924462 M28_Spy0239 M28_Spy0240 nifS3 nifU TRUE 0.956 -13.000 0.292 1.000 N NA
 924462 924463 M28_Spy0240 M28_Spy0241 nifU   TRUE 0.985 -7.000 0.152 0.002 N NA
 924464 924465 M28_Spy0242 M28_Spy0243   dacA2 TRUE 0.860 168.000 0.231 0.005 Y NA
 924466 924467 M28_Spy0244 M28_Spy0245 oppA oppB TRUE 0.956 53.000 0.273 0.043 Y NA
 924467 924468 M28_Spy0245 M28_Spy0246 oppB oppC TRUE 0.998 0.000 0.556 0.043 Y NA
 924468 924469 M28_Spy0246 M28_Spy0247 oppC oppD TRUE 0.996 9.000 0.650 1.000 Y NA
 924469 924470 M28_Spy0247 M28_Spy0248 oppD oppF TRUE 0.995 -7.000 0.095 0.001 Y NA
 924471 924472 M28_Spy0249 M28_Spy0250     FALSE 0.024 375.000 0.000 NA   NA
 924473 924474 M28_SpyR0010 M28_SpyT0042     TRUE 0.640 -246.000 0.000 NA   NA
 924474 924475 M28_SpyT0042 M28_SpyR0011     FALSE 0.034 296.000 0.000 NA   NA
 924475 924476 M28_SpyR0011 M28_SpyR0012     FALSE 0.158 85.000 0.000 NA   NA
 924476 924477 M28_SpyR0012 M28_SpyT0043     TRUE 0.837 6.000 0.000 NA   NA
 924477 924478 M28_SpyT0043 M28_SpyT0044     FALSE 0.174 80.000 0.000 NA   NA
 924478 924479 M28_SpyT0044 M28_Spy0251   comX TRUE 0.825 -4.000 0.000 NA   NA
 924479 924480 M28_Spy0251 M28_Spy0252 comX   FALSE 0.018 502.000 0.000 1.000   NA
 924480 924481 M28_Spy0252 M28_Spy0253     TRUE 0.988 0.000 0.555 1.000   NA
 924481 924482 M28_Spy0253 M28_Spy0254     TRUE 0.896 -22.000 0.068 NA   NA
 924482 924483 M28_Spy0254 M28_Spy0255   nadD TRUE 0.474 69.000 0.150 NA N NA
 924483 924484 M28_Spy0255 M28_Spy0256 nadD   TRUE 0.987 -3.000 0.199 1.000 Y NA
 924484 924485 M28_Spy0256 M28_Spy0257     TRUE 0.915 -24.000 0.149 NA   NA
 924485 924486 M28_Spy0257 M28_Spy0258     TRUE 0.943 0.000 0.085 NA   NA
 924486 924487 M28_Spy0258 M28_Spy0259     FALSE 0.136 254.000 0.094 NA   NA
 924487 924488 M28_Spy0259 M28_Spy0260     FALSE 0.029 338.000 0.000 NA   NA
 924488 924489 M28_Spy0260 M28_Spy0261     TRUE 0.801 -10.000 0.000 NA   NA
 924489 924490 M28_Spy0261 M28_Spy0262     FALSE 0.071 203.000 0.000 NA   NA
 924490 924491 M28_Spy0262 M28_Spy0263     FALSE 0.021 327.000 0.000 NA N NA
 924491 924492 M28_Spy0263 M28_Spy0264     FALSE 0.218 250.000 0.000 NA Y NA
 924492 924493 M28_Spy0264 M28_Spy0265     TRUE 0.998 1.000 0.938 1.000 Y NA
 924496 924497 M28_Spy0268 M28_Spy0269     TRUE 0.998 10.000 0.490 0.004 Y NA
 924497 924498 M28_Spy0269 M28_Spy0270   gidB FALSE 0.297 70.000 0.006 1.000 N NA
 924499 924500 M28_Spy0271 M28_Spy0272 lemA   TRUE 0.771 47.000 0.222 NA   NA
 924500 924501 M28_Spy0272 M28_Spy0273     FALSE 0.093 231.000 0.002 NA   NA
 924501 924502 M28_Spy0273 M28_Spy0274   covR FALSE 0.088 267.000 0.014 NA   NA
 924502 924503 M28_Spy0274 M28_Spy0275 covR covS TRUE 0.997 6.000 0.438 0.086 Y NA
 924503 924504 M28_Spy0275 M28_Spy0276 covS   FALSE 0.093 215.000 0.007 NA N NA
 924504 924505 M28_Spy0276 M28_Spy0277   dnaB TRUE 0.899 -16.000 0.109 NA N NA
 924505 924506 M28_Spy0277 M28_Spy0278 dnaB dnaI TRUE 0.997 1.000 0.817 NA Y NA
 924506 924507 M28_Spy0278 M28_Spy0279 dnaI pgdA TRUE 0.419 63.000 0.008 1.000   NA
 924507 924508 M28_Spy0279 M28_Spy0280 pgdA snf FALSE 0.119 207.000 0.004 1.000   NA
 924508 924509 M28_Spy0280 M28_Spy0281 snf   FALSE 0.175 243.000 0.151 NA   NA
 924509 924510 M28_Spy0281 M28_Spy0282   murC TRUE 0.663 40.000 0.013 NA   NA
 924510 924511 M28_Spy0282 M28_Spy0283 murC   TRUE 0.609 46.000 0.014 1.000   NA
 924511 924512 M28_Spy0283 M28_Spy0284     FALSE 0.319 112.000 0.120 NA   NA
 924512 924513 M28_Spy0284 M28_Spy0285   greA TRUE 0.843 25.000 0.079 NA   NA
 924514 924515 M28_Spy0286 M28_Spy0287     FALSE 0.390 82.000 0.154 1.000 N NA
 924516 924517 M28_Spy0288 M28_Spy0289     TRUE 0.716 39.000 0.043 1.000   NA
 924517 924518 M28_Spy0289 M28_Spy0290     TRUE 0.922 15.000 0.123 NA   NA
 924518 924519 M28_Spy0290 M28_Spy0291     FALSE 0.090 178.000 0.000 NA   NA
 924519 924520 M28_Spy0291 M28_Spy0292   glr FALSE 0.175 178.000 0.014 NA   NA
 924520 924521 M28_Spy0292 M28_Spy0293 glr   TRUE 0.914 -3.000 0.034 1.000 N NA
 924521 924522 M28_Spy0293 M28_Spy0294     TRUE 0.905 -21.000 0.085 1.000   NA
 924522 924523 M28_Spy0294 M28_Spy0295     TRUE 0.937 -3.000 0.065 1.000   NA
 924523 924524 M28_Spy0295 M28_Spy0296     TRUE 0.945 -3.000 0.111 1.000   NA
 924524 924525 M28_Spy0296 M28_Spy0297     TRUE 0.925 0.000 0.017 NA   NA
 924525 924526 M28_Spy0297 M28_Spy0298     TRUE 0.988 -3.000 0.570 NA   NA
 924526 924527 M28_Spy0298 M28_Spy0299     TRUE 0.425 98.000 0.224 NA N NA
 924527 924528 M28_Spy0299 M28_Spy0300     TRUE 0.918 -3.000 0.014 NA   NA
 924528 924529 M28_Spy0300 M28_Spy0301     FALSE 0.186 142.000 0.002 NA   NA
 924529 924530 M28_Spy0301 M28_Spy0302     FALSE 0.031 312.000 0.000 NA   NA
 924530 924531 M28_Spy0302 M28_Spy0303     TRUE 0.989 2.000 0.600 NA   NA
 924531 924532 M28_Spy0303 M28_Spy0304     FALSE 0.101 275.000 0.050 1.000   NA
 924532 924533 M28_Spy0304 M28_Spy0305     TRUE 0.977 12.000 0.408 NA   NA
 924533 924534 M28_Spy0305 M28_Spy0306   hlyX FALSE 0.282 94.000 0.023 NA   NA
 924534 924535 M28_Spy0306 M28_Spy0307 hlyX pflC TRUE 0.923 6.000 0.028 NA   NA
 924535 924536 M28_Spy0307 M28_Spy0308 pflC ppaC FALSE 0.213 125.000 0.023 1.000 N NA
 924536 924537 M28_Spy0308 M28_Spy0309 ppaC   TRUE 0.606 46.000 0.015 NA   NA
 924538 924539 M28_Spy0310 M28_Spy0311 fhuG fhuB TRUE 0.998 -39.000 0.857 0.043 Y NA
 924539 924540 M28_Spy0311 M28_Spy0312 fhuB fhuD TRUE 0.982 -10.000 0.179 1.000 Y NA
 924540 924541 M28_Spy0312 M28_Spy0313 fhuD fhuA TRUE 0.993 26.000 0.889 1.000 Y NA
 924541 924542 M28_Spy0313 M28_Spy0314 fhuA murE FALSE 0.114 246.000 0.062 1.000 N NA
 924543 924544 M28_Spy0315 M28_Spy0316   upp FALSE 0.159 168.000 0.002 1.000   NA
 924544 924545 M28_Spy0316 M28_Spy0317 upp clpP FALSE 0.093 224.000 0.010 1.000 N NA
 924545 924546 M28_Spy0317 M28_Spy0318 clpP   FALSE 0.047 495.000 0.065 NA   NA
 924546 924547 M28_Spy0318 M28_Spy0319   tdk FALSE 0.051 249.000 0.000 NA   NA
 924547 924548 M28_Spy0319 M28_Spy0320 tdk dnaX TRUE 0.941 18.000 0.254 1.000 N NA
 924548 924549 M28_Spy0320 M28_Spy0321 dnaX   FALSE 0.081 187.000 0.000 NA   NA
 924549 924550 M28_Spy0321 M28_Spy0322     FALSE 0.108 155.000 0.000 NA   NA
 924550 924551 M28_Spy0322 M28_Spy0323     TRUE 0.929 5.000 0.043 NA   NA
 924551 924552 M28_Spy0323 M28_Spy0324     TRUE 0.752 27.000 0.005 NA   NA
 924556 924557 M28_Spy0328 M28_Spy0329 lctO prtS FALSE 0.046 266.000 0.000 1.000   NA
 924557 924558 M28_Spy0329 M28_Spy0330 prtS   FALSE 0.018 491.000 0.000 NA   NA
 924558 924559 M28_Spy0330 M28_Spy0331     FALSE 0.136 103.000 0.000 NA   NA
 924559 924560 M28_Spy0331 M28_Spy0332   metS FALSE 0.055 240.000 0.000 NA   NA
 924560 924561 M28_Spy0332 M28_Spy0333 metS   FALSE 0.026 363.000 0.000 NA   NA
 924561 924562 M28_Spy0333 M28_Spy0334   nrdF.1 TRUE 0.840 -3.000 0.000 NA   NA
 924562 924563 M28_Spy0334 M28_Spy0335 nrdF.1 nrdI TRUE 0.996 4.000 0.643 NA Y NA
 924563 924564 M28_Spy0335 M28_Spy0336 nrdI nrdE.1 TRUE 0.996 -33.000 1.000 NA Y NA
 924567 924568 M28_Spy0339 M28_Spy0340     FALSE 0.036 289.000 0.000 NA   NA
 924569 924570 M28_Spy0341 M28_Spy0342     FALSE 0.070 205.000 0.000 NA   NA
 924574 924575 M28_Spy0346 M28_Spy0347     FALSE 0.016 615.000 0.000 NA   NA
 924575 924576 M28_Spy0347 M28_Spy0348     TRUE 0.989 -7.000 0.710 NA   NA
 924576 924577 M28_Spy0348 M28_Spy0349     TRUE 0.700 43.000 0.067 1.000   NA
 924577 924578 M28_Spy0349 M28_Spy0350     FALSE 0.031 327.000 0.000 1.000   NA
 924578 924579 M28_Spy0350 M28_Spy0351   gcaD FALSE 0.123 173.000 0.002 1.000 N NA
 924579 924580 M28_Spy0351 M28_Spy0352 gcaD   TRUE 0.711 31.000 0.015 1.000 N NA
 924580 924581 M28_Spy0352 M28_Spy0353     TRUE 0.924 -3.000 0.025 NA   NA
 924581 924582 M28_Spy0353 M28_Spy0354   pfs TRUE 0.869 20.000 0.041 NA   NA
 924582 924583 M28_Spy0354 M28_Spy0355 pfs   FALSE 0.114 151.000 0.000 NA   NA
 924585 924586 M28_Spy0357 M28_Spy0358 mtsA mtsB TRUE 0.924 37.000 0.135 1.000 Y NA
 924586 924587 M28_Spy0358 M28_Spy0359 mtsB mtsC TRUE 0.985 1.000 0.130 1.000 Y NA
 924591 924592 M28_Spy0363 M28_Spy0364 rplK rplA TRUE 0.964 106.000 0.838 0.040 Y NA
 924592 924593 M28_Spy0364 M28_Spy0365 rplA pyrH FALSE 0.039 322.000 0.002 1.000 N NA
 924593 924594 M28_Spy0365 M28_Spy0366 pyrH rrf TRUE 0.959 29.000 0.626 1.000 N NA
 924594 924595 M28_Spy0366 M28_Spy0367 rrf   FALSE 0.232 109.000 0.012 NA   NA
 924595 924596 M28_Spy0367 M28_Spy0368   msrA.2 FALSE 0.353 73.000 0.016 NA   NA
 924596 924597 M28_Spy0368 M28_Spy0369 msrA.2   TRUE 0.927 -9.000 0.080 1.000   NA
 924597 924598 M28_Spy0369 M28_Spy0370     FALSE 0.249 120.000 0.023 1.000   NA
 924598 924599 M28_Spy0370 M28_Spy0371     FALSE 0.055 240.000 0.000 NA   NA
 924599 924600 M28_Spy0371 M28_Spy0372   phoH FALSE 0.167 159.000 0.004 NA   NA
 924600 924601 M28_Spy0372 M28_Spy0373 phoH   TRUE 0.497 46.000 0.005 NA N NA
 924601 924602 M28_Spy0373 M28_Spy0374     FALSE 0.206 108.000 0.003 NA   NA
 924602 924603 M28_Spy0374 M28_Spy0375   dgk TRUE 0.886 -19.000 0.035 NA   NA
 924603 924604 M28_Spy0375 M28_Spy0376 dgk era FALSE 0.284 120.000 0.063 1.000   NA
 924604 924605 M28_Spy0376 M28_Spy0377 era   TRUE 0.846 -25.000 0.007 1.000   NA
 924607 924608 M28_Spy0379 M28_Spy0380     TRUE 0.979 15.000 0.500 NA   NA
 924609 924610 M28_Spy0381 M28_Spy0382     TRUE 0.922 -87.000 0.000 0.009   NA
 924611 924612 M28_Spy0383 M28_Spy0384     TRUE 0.969 13.000 0.333 NA   NA
 924612 924613 M28_Spy0384 M28_Spy0385   silD FALSE 0.026 361.000 0.000 NA   NA
 924613 924614 M28_Spy0385 M28_Spy0386 silD   TRUE 0.915 50.000 0.667 NA   NA
 924614 924615 M28_Spy0386 M28_Spy0387     FALSE 0.089 179.000 0.000 NA   NA
 924617 924618 M28_Spy0389 M28_Spy0390     FALSE 0.142 97.000 0.000 NA   NA
 924620 924621 M28_Spy0392 M28_Spy0393     TRUE 0.845 3.000 0.000 NA   NA
 924623 924624 M28_Spy0395 M28_Spy0396 mutR fpg FALSE 0.160 172.000 0.004 1.000   NA
 924624 924625 M28_Spy0396 M28_Spy0397 fpg   TRUE 0.815 -90.000 0.066 1.000 N NA
 924625 924626 M28_Spy0397 M28_Spy0398     FALSE 0.084 190.000 0.000 1.000   NA
 924626 924627 M28_Spy0398 M28_Spy0399     FALSE 0.216 122.000 0.007 1.000   NA
 924627 924628 M28_Spy0399 M28_Spy0400     TRUE 0.899 -3.000 0.012 1.000 N NA
 924628 924629 M28_Spy0400 M28_Spy0401   secG TRUE 0.542 46.000 0.012 1.000 N NA
 924629 924630 M28_Spy0401 M28_Spy0402 secG   FALSE 0.284 94.000 0.064 1.000 N NA
 924630 924631 M28_Spy0402 M28_Spy0403     TRUE 0.981 3.000 0.143 0.034 N NA
 924631 924632 M28_Spy0403 M28_Spy0404     TRUE 0.964 6.000 0.000 1.000 Y NA
 924633 924634 M28_Spy0405 M28_Spy0406 pcp   TRUE 0.797 50.000 0.300 NA   NA
 924634 924635 M28_Spy0406 M28_Spy0407     TRUE 0.995 0.000 0.939 NA   NA
 924635 924636 M28_Spy0407 M28_Spy0408     FALSE 0.109 154.000 0.000 NA   NA
 924636 924637 M28_Spy0408 M28_Spy0409   gloA FALSE 0.237 85.000 0.012 NA N NA
 924637 924638 M28_Spy0409 M28_Spy0410 gloA   TRUE 0.895 11.000 0.019 1.000 N NA
 924638 924639 M28_Spy0410 M28_Spy0411   pepQ TRUE 0.568 49.000 0.053 1.000 N NA
 924640 924641 M28_Spy0412 M28_Spy0413 ccpA   FALSE 0.222 131.000 0.033 1.000 N NA
 924641 924642 M28_Spy0413 M28_Spy0414     TRUE 0.998 2.000 0.413 0.011 Y NA
 924642 924643 M28_Spy0414 M28_Spy0415   thrS FALSE 0.015 422.000 0.000 1.000 N NA
 924643 924644 M28_Spy0415 M28_Spy0416 thrS   FALSE 0.225 141.000 0.012 1.000   NA
 924644 924645 M28_Spy0416 M28_Spy0417     TRUE 0.697 -40.000 0.000 NA   NA
 924645 924646 M28_Spy0417 M28_Spy0418     TRUE 0.933 2.000 0.042 NA   NA
 924646 924647 M28_Spy0418 M28_Spy0419     FALSE 0.155 86.000 0.000 NA   NA
 924647 924648 M28_Spy0419 M28_Spy0420     FALSE 0.023 395.000 0.000 1.000   NA
 924648 924649 M28_Spy0420 M28_Spy0421     TRUE 0.990 -43.000 0.576 1.000 Y NA
 924649 924650 M28_Spy0421 M28_Spy0422     TRUE 0.514 56.000 0.030 NA   NA
 924650 924651 M28_Spy0422 M28_Spy0423   vicR FALSE 0.191 162.000 0.013 NA   NA
 924651 924652 M28_Spy0423 M28_Spy0424 vicR vicK TRUE 0.998 -7.000 0.597 0.058 Y NA
 924652 924653 M28_Spy0424 M28_Spy0425 vicK vicX TRUE 0.931 4.000 0.038 1.000   NA
 924653 924654 M28_Spy0425 M28_Spy0426 vicX acpA FALSE 0.033 433.000 0.002 1.000   NA
 924654 924655 M28_Spy0426 M28_Spy0427 acpA smc TRUE 0.939 1.000 0.120 1.000 N NA
 924657 924658 M28_Spy0429 M28_Spy0430 aroE.2   TRUE 0.786 -3.000 0.000 NA N NA
 924658 924659 M28_Spy0430 M28_Spy0431     TRUE 0.753 -22.000 0.000 NA   NA
 924659 924660 M28_Spy0431 M28_Spy0432     TRUE 0.816 -7.000 0.000 NA   NA
 924660 924661 M28_Spy0432 M28_Spy0433   metK1 TRUE 0.827 10.000 0.000 NA   NA
 924661 924662 M28_Spy0433 M28_Spy0434 metK1   TRUE 0.774 -16.000 0.000 NA   NA
 924662 924663 M28_Spy0434 M28_Spy0435     FALSE 0.316 55.000 0.000 NA   NA
 924663 924664 M28_Spy0435 M28_Spy0436     FALSE 0.022 403.000 0.000 NA   NA
 924664 924665 M28_Spy0436 M28_Spy0437     TRUE 0.664 24.000 0.000 NA   NA
 924665 924666 M28_Spy0437 M28_Spy0438   mefE FALSE 0.128 117.000 0.000 1.000   NA
 924667 924668 M28_Spy0439 M28_Spy0440     TRUE 0.974 -10.000 0.400 NA   NA
 924668 924669 M28_Spy0440 M28_Spy0441     TRUE 0.808 -9.000 0.000 NA   NA
 924669 924670 M28_Spy0441 M28_Spy0442     TRUE 0.983 0.000 0.429 NA   NA
 924671 924672 M28_Spy0443 M28_Spy0444     TRUE 0.616 28.000 0.000 NA   NA
 924672 924673 M28_Spy0444 M28_Spy0445     TRUE 0.972 0.000 0.273 NA   NA
 924673 924674 M28_Spy0445 M28_Spy0446     TRUE 0.570 133.000 0.400 NA   NA
 924674 924675 M28_Spy0446 M28_Spy0447     FALSE 0.134 105.000 0.000 NA   NA
 924676 924677 M28_Spy0448 M28_Spy0449     TRUE 0.873 120.000 0.333 0.074 Y NA
 924677 924678 M28_Spy0449 M28_Spy0450     FALSE 0.165 82.000 0.000 NA   NA
 924679 924680 M28_Spy0451 M28_Spy0452     TRUE 0.993 4.000 0.375 0.019   NA
 924680 924681 M28_Spy0452 M28_Spy0453   ftsY TRUE 0.969 0.000 0.007 0.082   NA
 924683 924684 M28_Spy0455 M28_Spy0456 licT   TRUE 0.971 2.000 0.259 1.000   NA
 924684 924685 M28_Spy0456 M28_Spy0457   bglA TRUE 0.984 19.000 0.318 1.000 Y NA
 924686 924687 M28_Spy0458 M28_Spy0459     TRUE 0.988 -24.000 0.841 NA   NA
 924690 924691 M28_Spy0461 M28_Spy0463     TRUE 0.911 -58.000 0.215 NA   NA
 924691 924692 M28_Spy0463 M28_Spy0464     TRUE 0.474 64.000 0.051 NA   NA
 924692 924693 M28_Spy0464 M28_Spy0465   ptsK FALSE 0.220 305.000 0.017 NA Y NA
 924693 924694 M28_Spy0465 M28_Spy0466 ptsK lgt TRUE 0.982 -3.000 0.494 1.000 N NA
 924694 924695 M28_Spy0466 M28_Spy0467 lgt   TRUE 0.867 22.000 0.079 NA   NA
 924695 924696 M28_Spy0467 M28_Spy0468     TRUE 0.928 -28.000 0.206 NA   NA
 924698 924699 M28_Spy0470 M28_Spy0471     TRUE 0.879 102.000 0.156 0.003 Y NA
 924699 924700 M28_Spy0471 M28_Spy0472     FALSE 0.064 217.000 0.000 NA   NA
 924701 924702 M28_Spy0473 M28_Spy0474   lysS FALSE 0.124 136.000 0.000 NA   NA
 924704 924705 M28_Spy0476 M28_Spy0477     FALSE 0.061 341.000 0.018 NA   NA
 924705 924706 M28_Spy0477 M28_Spy0478     FALSE 0.262 90.000 0.010 NA   NA
 924706 924707 M28_Spy0478 M28_Spy0479     FALSE 0.122 224.000 0.016 NA   NA
 924708 924709 M28_Spy0480 M28_Spy0481     TRUE 0.968 -16.000 0.375 NA   NA
 924710 924711 M28_Spy0482 M28_Spy0483   pepF FALSE 0.359 73.000 0.059 1.000 N NA
 924712 924713 M28_Spy0484 M28_Spy0485 ppc ftsW FALSE 0.212 140.000 0.028 1.000 N NA
 924715 924716 M28_Spy0487 M28_Spy0488 tuf tpi FALSE 0.074 241.000 0.003 1.000 N NA
 924717 924718 M28_Spy0489 M28_Spy0490   murM TRUE 0.994 -13.000 0.200 0.011 Y NA
 924718 924719 M28_Spy0490 M28_Spy0491 murM   TRUE 0.979 -15.000 0.500 1.000   NA
 924719 924720 M28_Spy0491 M28_Spy0492     FALSE 0.114 151.000 0.000 NA   NA
 924720 924721 M28_Spy0492 M28_Spy0493     FALSE 0.208 72.000 0.000 NA   NA
 924722 924723 M28_Spy0494 M28_Spy0495   pacL FALSE 0.058 230.000 0.000 NA   NA
 924724 924725 M28_Spy0496 M28_Spy0497 regR   TRUE 0.959 28.000 0.562 NA   NA
 924725 924726 M28_Spy0497 M28_Spy0498   agaD TRUE 0.727 68.000 0.375 NA   NA
 924726 924727 M28_Spy0498 M28_Spy0499 agaD   TRUE 0.998 -73.000 0.933 0.021 Y NA
 924727 924728 M28_Spy0499 M28_Spy0500   agaV TRUE 0.999 19.000 0.933 0.021 Y NA
 924728 924729 M28_Spy0500 M28_Spy0501 agaV   TRUE 0.842 36.000 0.200 1.000   NA
 924729 924730 M28_Spy0501 M28_Spy0502     TRUE 0.949 0.000 0.120 1.000   NA
 924731 924732 M28_Spy0503 M28_Spy0504 idnO   TRUE 0.880 25.000 0.197 1.000 N NA
 924732 924733 M28_Spy0504 M28_Spy0505     TRUE 0.977 -10.000 0.094 1.000 Y NA
 924733 924734 M28_Spy0505 M28_Spy0506   kgdA TRUE 0.980 -13.000 0.167 1.000 Y NA
 924734 924735 M28_Spy0506 M28_Spy0507 kgdA   FALSE 0.132 290.000 0.000 0.047   NA
 924735 924736 M28_Spy0507 M28_Spy0508     FALSE 0.016 645.000 0.000 1.000   NA
 924736 924737 M28_Spy0508 M28_Spy0509   prfB FALSE 0.156 154.000 0.006 1.000 N NA
 924737 924738 M28_Spy0509 M28_Spy0510 prfB ftsE TRUE 0.862 19.000 0.053 1.000 N NA
 924738 924739 M28_Spy0510 M28_Spy0511 ftsE ftsX TRUE 0.986 -37.000 0.431 1.000 Y NA
 924741 924742 M28_Spy0513 M28_Spy0514   dinG FALSE 0.100 108.000 0.000 1.000 N NA
 924742 924743 M28_Spy0514 M28_Spy0515 dinG aspC FALSE 0.022 335.000 0.000 1.000 N NA
 924743 924744 M28_Spy0515 M28_Spy0516 aspC asnS TRUE 0.775 30.000 0.068 1.000 N NA
 924744 924745 M28_Spy0516 M28_Spy0517 asnS   FALSE 0.021 415.000 0.000 NA   NA
 924745 924746 M28_Spy0517 M28_Spy0518     TRUE 0.964 -3.000 0.214 NA   NA
 924746 924747 M28_Spy0518 M28_Spy0519     TRUE 0.983 -3.000 0.470 NA   NA
 924747 924748 M28_Spy0519 M28_Spy0520   pepD FALSE 0.236 133.000 0.015 NA   NA
 924748 924749 M28_Spy0520 M28_Spy0521 pepD   FALSE 0.389 152.000 0.250 1.000 N NA
 924749 924750 M28_Spy0521 M28_Spy0522     FALSE 0.262 139.000 0.091 1.000 N NA
 924750 924751 M28_Spy0522 M28_Spy0523   agaS TRUE 0.906 20.000 0.178 1.000 N NA
 924752 924753 M28_Spy0524 M28_Spy0525 rpmE   FALSE 0.249 115.000 0.020 1.000   NA
 924754 924755 M28_Spy0526 M28_Spy0527     FALSE 0.262 175.000 0.167 1.000 N NA
 924755 924756 M28_Spy0527 M28_Spy0528     TRUE 0.892 -19.000 0.094 1.000 N NA
 924756 924757 M28_Spy0528 M28_Spy0529   rplS FALSE 0.174 115.000 0.006 1.000 N NA
 924757 924758 M28_Spy0529 M28_SpyT0045 rplS   FALSE 0.053 247.000 0.000 NA   NA
 924760 924761 M28_Spy0531 M28_Spy0532   gyrB TRUE 0.924 1.000 0.013 1.000   NA
 924761 924762 M28_Spy0532 M28_Spy0533 gyrB   FALSE 0.040 368.000 0.011 1.000 N NA
 924765 924766 M28_Spy0536 M28_Spy0537     TRUE 0.823 -6.000 0.000 NA   NA
 924766 924767 M28_Spy0537 M28_Spy0538     FALSE 0.024 375.000 0.000 NA   NA
 924768 924769 M28_Spy0539 M28_Spy0540 epf sagA FALSE 0.014 865.000 0.000 NA   NA
 924769 924770 M28_Spy0540 M28_Spy0541 sagA sagB FALSE 0.060 222.000 0.000 NA   NA
 924770 924771 M28_Spy0541 M28_Spy0542 sagB sagC TRUE 0.961 -3.000 0.200 NA   NA
 924771 924772 M28_Spy0542 M28_Spy0543 sagC sagD TRUE 0.950 20.000 0.318 NA   NA
 924772 924773 M28_Spy0543 M28_Spy0544 sagD sagE TRUE 0.906 -25.000 0.136 NA   NA
 924773 924774 M28_Spy0544 M28_Spy0545 sagE sagF TRUE 0.992 -3.000 0.750 NA   NA
 924774 924775 M28_Spy0545 M28_Spy0546 sagF sagG TRUE 0.979 23.000 0.750 NA   NA
 924775 924776 M28_Spy0546 M28_Spy0547 sagG sagH TRUE 0.982 9.000 0.500 1.000 N NA
 924776 924777 M28_Spy0547 M28_Spy0548 sagH sagI TRUE 0.995 -3.000 0.160 0.008 Y NA
 924777 924778 M28_Spy0548 M28_Spy0549 sagI   FALSE 0.017 574.000 0.000 1.000   NA
 924778 924779 M28_Spy0549 M28_Spy0550     FALSE 0.040 278.000 0.000 NA   NA
 924779 924780 M28_Spy0550 M28_Spy0551   lig FALSE 0.144 194.000 0.010 NA   NA
 924780 924781 M28_Spy0551 M28_Spy0552 lig   TRUE 0.868 14.000 0.013 1.000 N NA
 924781 924782 M28_Spy0552 M28_Spy0553   atpE FALSE 0.023 392.000 0.000 1.000   NA
 924782 924783 M28_Spy0553 M28_Spy0554 atpE atpB TRUE 0.950 35.000 0.189 0.009   NA
 924783 924784 M28_Spy0554 M28_Spy0555 atpB atpF TRUE 0.989 18.000 0.032 0.009 Y NA
 924784 924785 M28_Spy0555 M28_Spy0556 atpF atpH TRUE 0.997 0.000 0.222 0.009 Y NA
 924785 924786 M28_Spy0556 M28_Spy0557 atpH atpA TRUE 0.999 16.000 0.864 0.009 Y NA
 924786 924787 M28_Spy0557 M28_Spy0558 atpA atpG TRUE 0.999 16.000 0.846 0.009 Y NA
 924787 924788 M28_Spy0558 M28_Spy0559 atpG atpD TRUE 0.953 162.000 0.724 0.009 Y NA
 924788 924789 M28_Spy0559 M28_Spy0560 atpD atpC TRUE 0.999 13.000 0.837 0.009 Y NA
 924789 924790 M28_Spy0560 M28_Spy0561 atpC   FALSE 0.102 266.000 0.039 NA   NA
 924790 924791 M28_Spy0561 M28_Spy0562   murA TRUE 0.679 65.000 0.279 NA   NA
 924791 924792 M28_Spy0562 M28_Spy0563 murA epuA TRUE 0.944 4.000 0.110 NA   NA
 924792 924793 M28_Spy0563 M28_Spy0564 epuA   TRUE 0.664 24.000 0.000 NA   NA
 924793 924794 M28_Spy0564 M28_Spy0565   endA TRUE 0.961 -16.000 0.000 0.003   NA
 924794 924795 M28_Spy0565 M28_Spy0566 endA pheS FALSE 0.041 283.000 0.000 1.000   NA
 924795 924796 M28_Spy0566 M28_Spy0567 pheS pheT TRUE 0.933 195.000 0.574 0.001 Y NA
 924796 924797 M28_Spy0567 M28_Spy0568 pheT   FALSE 0.244 74.000 0.002 1.000 N NA
 924797 924798 M28_Spy0568 M28_Spy0569     TRUE 0.891 -7.000 0.006 NA   NA
 924798 924799 M28_Spy0569 M28_Spy0570     TRUE 0.432 73.000 0.095 NA   NA
 924799 924800 M28_Spy0570 M28_Spy0571     TRUE 0.982 7.000 0.444 1.000   NA
 924802 924803 M28_Spy0573 M28_Spy0574 rexB rexA TRUE 0.981 -39.000 0.070 0.072 Y NA
 924803 924804 M28_Spy0574 M28_Spy0575 rexA   FALSE 0.094 116.000 0.000 1.000 N NA
 924804 924805 M28_Spy0575 M28_Spy0576   rpsU FALSE 0.248 141.000 0.027 1.000   NA
 924807 924808 M28_Spy0578 M28_Spy0579 dnaG rpoD TRUE 0.955 9.000 0.209 1.000 N NA
 924808 924809 M28_Spy0579 M28_Spy0580 rpoD   FALSE 0.130 236.000 0.044 NA   NA
 924809 924810 M28_Spy0580 M28_Spy0581   rmlD TRUE 0.456 78.000 0.152 NA   NA
 924810 924811 M28_Spy0581 M28_Spy0582 rmlD rgpAc TRUE 0.692 119.000 0.212 1.000 Y NA
 924811 924812 M28_Spy0582 M28_Spy0583 rgpAc rgpBc TRUE 0.964 -10.000 0.289 NA   NA
 924812 924813 M28_Spy0583 M28_Spy0584 rgpBc rgpCc TRUE 0.973 3.000 0.289 NA   NA
 924813 924814 M28_Spy0584 M28_Spy0585 rgpCc rgpDc TRUE 0.805 0.000 0.000 1.000 N NA
 924814 924815 M28_Spy0585 M28_Spy0586 rgpDc rgpEc TRUE 0.647 25.000 0.000 NA   NA
 924815 924816 M28_Spy0586 M28_Spy0587 rgpEc rgpFc TRUE 0.979 -3.000 0.385 NA   NA
 924816 924817 M28_Spy0587 M28_Spy0588 rgpFc   TRUE 0.964 -3.000 0.000 NA Y NA
 924817 924818 M28_Spy0588 M28_Spy0589     FALSE 0.336 179.000 0.000 NA Y NA
 924818 924819 M28_Spy0589 M28_Spy0590     TRUE 0.988 2.000 0.568 NA   NA
 924819 924820 M28_Spy0590 M28_Spy0591   amrA TRUE 0.912 -7.000 0.027 NA   NA
 924820 924821 M28_Spy0591 M28_Spy0592 amrA   TRUE 0.933 -19.000 0.182 NA   NA
 924821 924822 M28_Spy0592 M28_Spy0593   pepT FALSE 0.165 82.000 0.000 NA   NA
 924822 924823 M28_Spy0593 M28_Spy0594 pepT ebsA TRUE 0.694 41.000 0.051 NA   NA
 924825 924826 M28_Spy0596 M28_Spy0597   cmk TRUE 0.884 15.000 0.012 1.000   NA
 924826 924827 M28_Spy0597 M28_Spy0598 cmk infC FALSE 0.156 162.000 0.010 1.000 N NA
 924827 924828 M28_Spy0598 M28_Spy0599 infC rpl36 TRUE 0.977 42.000 0.652 1.000 Y NA
 924828 924829 M28_Spy0599 M28_Spy0600 rpl36 rplT TRUE 0.989 59.000 0.928 0.028 Y NA
 924831 924832 M28_Spy0602 M28_Spy0603   aroD TRUE 0.946 -3.000 0.125 1.000   NA
 924832 924833 M28_Spy0603 M28_Spy0604 aroD aroF TRUE 0.824 94.000 0.004 0.003 Y NA
 924833 924834 M28_Spy0604 M28_Spy0605 aroF   TRUE 0.408 61.000 0.005 NA   NA
 924837 924838 M28_Spy0608 M28_Spy0609 folC.2   TRUE 0.973 6.000 0.308 NA   NA
 924839 924840 M28_Spy0610 M28_Spy0611 nifS1 thiI TRUE 0.969 12.000 0.349 1.000 N NA
 924840 924841 M28_Spy0611 M28_Spy0612 thiI capA TRUE 0.642 38.000 0.014 1.000 N NA
 924841 924842 M28_Spy0612 M28_Spy0613 capA rplU FALSE 0.049 214.000 0.000 1.000 N NA
 924842 924843 M28_Spy0613 M28_Spy0614 rplU   TRUE 0.985 12.000 0.208 NA Y NA
 924843 924844 M28_Spy0614 M28_Spy0615   rpmA TRUE 0.960 28.000 0.203 NA Y NA
 924844 924845 M28_Spy0615 M28_Spy0616 rpmA   FALSE 0.020 358.000 0.000 1.000 N NA
 924845 924846 M28_Spy0616 M28_Spy0617   lsp TRUE 0.935 -3.000 0.119 1.000 N NA
 924846 924847 M28_Spy0617 M28_Spy0618 lsp   TRUE 0.909 -10.000 0.082 1.000 N NA
 924847 924848 M28_Spy0618 M28_Spy0619   pyrR FALSE 0.045 395.000 0.048 1.000 N NA
 924848 924849 M28_Spy0619 M28_Spy0620 pyrR pyrP TRUE 0.976 16.000 0.140 1.000 Y NA
 924849 924850 M28_Spy0620 M28_Spy0621 pyrP pyrB TRUE 0.980 7.000 0.064 1.000 Y NA
 924850 924851 M28_Spy0621 M28_Spy0622 pyrB carA TRUE 0.864 44.000 0.014 1.000 Y NA
 924851 924852 M28_Spy0622 M28_Spy0623 carA   TRUE 0.723 -28.000 0.000 NA   NA
 924852 924853 M28_Spy0623 M28_Spy0624   carB FALSE 0.188 77.000 0.000 NA   NA
 924853 924854 M28_Spy0624 M28_Spy0625 carB   FALSE 0.120 207.000 0.017 1.000 N NA
 924854 924855 M28_Spy0625 M28_Spy0626     TRUE 0.994 0.000 0.923 1.000 N NA
 924855 924856 M28_Spy0626 M28_Spy0627     TRUE 0.997 12.000 0.923 1.000 Y NA
 924856 924857 M28_Spy0627 M28_Spy0628     FALSE 0.050 212.000 0.000 1.000 N NA
 924857 924858 M28_Spy0628 M28_Spy0629   rpsP FALSE 0.164 127.000 0.003 1.000 N NA
 924858 924859 M28_Spy0629 M28_Spy0630 rpsP   TRUE 0.978 10.000 0.385 1.000   NA
 924859 924860 M28_Spy0630 M28_Spy0631     TRUE 0.831 9.000 0.000 NA   NA
 924860 924861 M28_Spy0631 M28_Spy0632     FALSE 0.014 816.000 0.000 NA   NA
 924861 924862 M28_Spy0632 M28_Spy0633     TRUE 0.928 20.000 0.200 1.000   NA
 924864 924865 M28_Spy0635 M28_Spy0636   rimM FALSE 0.049 215.000 0.000 1.000 N NA
 924865 924866 M28_Spy0636 M28_Spy0637 rimM trmD TRUE 0.995 -10.000 0.672 1.000 Y NA
 924866 924867 M28_Spy0637 M28_Spy0638 trmD trxB TRUE 0.895 0.000 0.007 1.000 N NA
 924867 924868 M28_Spy0638 M28_Spy0639 trxB   FALSE 0.207 179.000 0.059 NA   NA
 924868 924869 M28_Spy0639 M28_Spy0640   apbA TRUE 0.969 13.000 0.333 NA   NA
 924869 924870 M28_Spy0640 M28_Spy0641 apbA fruR FALSE 0.036 256.000 0.000 1.000 N NA
 924870 924871 M28_Spy0641 M28_Spy0642 fruR fruB TRUE 0.997 -3.000 0.721 1.000 Y NA
 924871 924872 M28_Spy0642 M28_Spy0643 fruB fruA TRUE 0.997 -3.000 0.816 1.000 Y NA
 924872 924873 M28_Spy0643 M28_Spy0644 fruA mur1.1 FALSE 0.247 93.000 0.022 1.000 N NA
 924873 924874 M28_Spy0644 M28_Spy0645 mur1.1 mur1.2 TRUE 0.909 152.000 0.333 0.003 Y NA
 924875 924876 M28_Spy0647 M28_Spy0648     TRUE 0.739 -25.000 0.000 NA   NA
 924876 924877 M28_Spy0648 M28_Spy0649   mac FALSE 0.092 176.000 0.000 NA   NA
 924878 924879 M28_Spy0650 M28_Spy0651     FALSE 0.061 228.000 0.000 1.000   NA
 924879 924880 M28_Spy0651 M28_Spy0652     TRUE 0.951 0.000 0.139 NA   NA
 924880 924881 M28_Spy0652 M28_Spy0653   papS FALSE 0.216 125.000 0.009 NA   NA
 924881 924882 M28_Spy0653 M28_Spy0654 papS   TRUE 0.934 -3.000 0.056 1.000   NA
 924882 924883 M28_Spy0654 M28_Spy0655     FALSE 0.047 257.000 0.000 NA   NA
 924883 924884 M28_Spy0655 M28_Spy0656     TRUE 0.831 9.000 0.000 NA   NA
 924884 924885 M28_Spy0656 M28_Spy0657   fms FALSE 0.048 256.000 0.000 NA   NA
 924887 924888 M28_Spy0659 M28_Spy0660     TRUE 0.993 3.000 0.800 1.000   NA
 924888 924889 M28_Spy0660 M28_Spy0661     TRUE 0.992 -18.000 0.533 1.000 Y NA
 924889 924890 M28_Spy0661 M28_Spy0662   mvaK1 FALSE 0.026 293.000 0.000 1.000 N NA
 924890 924891 M28_Spy0662 M28_Spy0663 mvaK1 mvaD TRUE 0.996 -18.000 0.281 0.003 Y NA
 924891 924892 M28_Spy0663 M28_Spy0664 mvaD mvaK2 TRUE 0.993 -55.000 0.312 0.005 Y NA
 924892 924893 M28_Spy0664 M28_Spy0665 mvaK2   TRUE 0.827 -103.000 0.097 1.000 N NA
 924894 924895 M28_Spy0666 M28_Spy0667   mvaS.1 TRUE 0.981 -13.000 0.183 1.000 Y NA
 924896 924897 M28_Spy0668 M28_Spy0669 thyA dyr TRUE 0.556 80.000 0.295 1.000 N NA
 924897 924898 M28_Spy0669 M28_Spy0670 dyr   TRUE 0.863 20.000 0.030 NA   NA
 924898 924899 M28_Spy0670 M28_Spy0671   clpX FALSE 0.227 130.000 0.012 NA   NA
 924899 924900 M28_Spy0671 M28_Spy0672 clpX   TRUE 0.924 10.000 0.043 1.000   NA
 924900 924901 M28_Spy0672 M28_Spy0673     FALSE 0.185 148.000 0.004 NA   NA
 924903 924904 M28_Spy0675 M28_Spy0676 rpiA deoB TRUE 0.665 77.000 0.018 1.000 Y NA
 924904 924905 M28_Spy0676 M28_Spy0677 deoB arsC TRUE 0.927 10.000 0.108 1.000 N NA
 924905 924906 M28_Spy0677 M28_Spy0678 arsC punA TRUE 0.902 -16.000 0.108 1.000 N NA
 924906 924907 M28_Spy0678 M28_Spy0679 punA deoD2 FALSE 0.394 528.000 0.040 0.001 Y NA
 924907 924908 M28_Spy0679 M28_Spy0680 deoD2 cpsX TRUE 0.920 -13.000 0.107 NA   NA
 924910 924911 M28_Spy0682 M28_Spy0683   pyrF FALSE 0.041 277.000 0.000 NA   NA
 924911 924912 M28_Spy0683 M28_Spy0684 pyrF pyrE TRUE 0.829 58.000 0.133 1.000 Y NA
 924912 924913 M28_Spy0684 M28_Spy0685 pyrE amiC FALSE 0.057 197.000 0.000 1.000 N NA
 924913 924914 M28_Spy0685 M28_Spy0686 amiC   TRUE 0.424 82.000 0.182 1.000 N NA
 924914 924915 M28_Spy0686 M28_Spy0687     TRUE 0.977 29.000 0.125 0.039 Y NA
 924915 924916 M28_Spy0687 M28_Spy0688   ung FALSE 0.215 133.000 0.025 1.000 N NA
 924916 924917 M28_Spy0688 M28_Spy0689 ung pyrC FALSE 0.185 124.000 0.009 1.000 N NA
 924919 924920 M28_Spy0691 M28_Spy0692 parE parC TRUE 0.963 85.000 0.552 0.003 Y NA
 924920 924921 M28_Spy0692 M28_Spy0693 parC bcaT FALSE 0.362 78.000 0.086 1.000 N NA
 924921 924922 M28_Spy0693 M28_Spy0694 bcaT   TRUE 0.541 61.000 0.095 NA   NA
 924922 924923 M28_Spy0694 M28_SpyT0046     FALSE 0.279 61.000 0.000 NA   NA
 924923 924924 M28_SpyT0046 M28_SpyT0047     FALSE 0.350 51.000 0.000 NA   NA
 924924 924925 M28_SpyT0047 M28_Spy0695     FALSE 0.124 124.000 0.000 NA   NA
 924925 924926 M28_Spy0695 M28_SpyT0048     FALSE 0.125 113.000 0.000 NA   NA
 924928 924929 M28_Spy0697 M28_Spy0698     FALSE 0.214 71.000 0.000 NA   NA
 924929 924930 M28_Spy0698 M28_Spy0699     FALSE 0.378 49.000 0.000 NA   NA
 924930 924931 M28_Spy0699 M28_Spy0700     TRUE 0.829 -133.000 0.056 1.000   NA
 924933 924934 M28_Spy0702 M28_Spy0703 miaA hflX TRUE 0.482 61.000 0.027 1.000   NA
 924934 924935 M28_Spy0703 M28_Spy0704 hflX   TRUE 0.876 -19.000 0.014 1.000   NA
 924935 924936 M28_Spy0704 M28_Spy0705   elaC TRUE 0.895 15.000 0.022 1.000   NA
 924936 924937 M28_Spy0705 M28_Spy0706 elaC   TRUE 0.943 0.000 0.074 1.000   NA
 924937 924938 M28_Spy0706 M28_Spy0707   recJ TRUE 0.922 -3.000 0.016 1.000   NA
 924938 924939 M28_Spy0707 M28_Spy0708 recJ apt FALSE 0.267 150.000 0.128 1.000 N NA
 924939 924940 M28_Spy0708 M28_Spy0709 apt dnaD FALSE 0.220 81.000 0.005 NA N NA
 924940 924941 M28_Spy0709 M28_Spy0710 dnaD nth TRUE 0.975 -3.000 0.007 NA Y NA
 924941 924942 M28_Spy0710 M28_Spy0711 nth   FALSE 0.327 72.000 0.006 NA   NA
 924942 924943 M28_Spy0711 M28_Spy0712     TRUE 0.956 -16.000 0.283 NA   NA
 924943 924944 M28_Spy0712 M28_Spy0713     TRUE 0.681 40.000 0.021 NA   NA
 924944 924945 M28_Spy0713 M28_Spy0714   cpsFO TRUE 0.476 59.000 0.059 1.000 N NA
 924945 924946 M28_Spy0714 M28_Spy0715 cpsFO cpsFP TRUE 0.986 0.000 0.149 1.000 Y NA
 924946 924947 M28_Spy0715 M28_Spy0716 cpsFP cpsFQ TRUE 0.579 244.000 0.350 1.000 Y NA
 924947 924948 M28_Spy0716 M28_Spy0717 cpsFQ   FALSE 0.046 221.000 0.000 1.000 N NA
 924948 924949 M28_Spy0717 M28_Spy0718     TRUE 0.549 58.000 0.074 NA   NA
 924949 924950 M28_Spy0718 M28_Spy0719     TRUE 0.950 -28.000 0.324 NA   NA
 924952 924953 M28_Spy0721 M28_Spy0722     FALSE 0.087 182.000 0.000 NA   NA
 924953 924954 M28_Spy0722 M28_Spy0723     TRUE 0.681 -49.000 0.000 NA   NA
 924954 924955 M28_Spy0723 M28_Spy0724     FALSE 0.100 164.000 0.000 NA   NA
 924955 924956 M28_Spy0724 M28_Spy0725     TRUE 0.994 -3.000 0.895 1.000   NA
 924956 924957 M28_Spy0725 M28_Spy0726     FALSE 0.154 204.000 0.026 1.000   NA
 924957 924958 M28_Spy0726 M28_Spy0727   estA FALSE 0.334 133.000 0.143 NA   NA
 924958 924959 M28_Spy0727 M28_Spy0728 estA   TRUE 0.841 30.000 0.150 NA   NA
 924959 924960 M28_Spy0728 M28_Spy0729     TRUE 0.625 46.000 0.029 NA   NA
 924960 924961 M28_Spy0729 M28_Spy0730   acoA FALSE 0.044 274.000 0.000 1.000   NA
 924961 924962 M28_Spy0730 M28_Spy0731 acoA acoB TRUE 0.991 56.000 0.769 0.001 Y NA
 924962 924963 M28_Spy0731 M28_Spy0732 acoB acoC TRUE 0.689 185.000 0.077 0.045 Y NA
 924966 924967 M28_Spy0735 M28_Spy0736   hylA FALSE 0.020 430.000 0.000 NA   NA
 924969 924970 M28_Spy0738 M28_Spy0739     TRUE 0.993 0.000 0.796 1.000   NA
 924971 924972 M28_Spy0740 M28_Spy0741     TRUE 0.986 -3.000 0.502 NA   NA
 924972 924973 M28_Spy0741 M28_Spy0742   femD TRUE 0.636 54.000 0.150 NA   NA
 924973 924974 M28_Spy0742 M28_Spy0743 femD   FALSE 0.194 124.000 0.003 NA   NA
 924974 924975 M28_Spy0743 M28_Spy0744   hemN TRUE 0.848 -33.000 0.021 NA   NA
 924975 924976 M28_Spy0744 M28_Spy0745 hemN   TRUE 0.915 10.000 0.060 1.000 N NA
 924976 924977 M28_Spy0745 M28_Spy0746     TRUE 0.924 0.000 0.055 1.000 N NA
 924977 924978 M28_Spy0746 M28_Spy0747     TRUE 0.966 -12.000 0.330 NA   NA
 924978 924979 M28_Spy0747 M28_Spy0748     FALSE 0.019 445.000 0.000 NA   NA
 924979 924980 M28_Spy0748 M28_Spy0749     TRUE 0.988 0.000 0.546 NA   NA
 924980 924981 M28_Spy0749 M28_Spy0750     TRUE 0.994 -3.000 0.876 NA   NA
 924981 924982 M28_Spy0750 M28_Spy0751     TRUE 0.919 -76.000 0.253 NA   NA
 924982 924983 M28_Spy0751 M28_Spy0752     FALSE 0.016 542.000 0.000 NA   NA
 11524203 924978   M28_Spy0747     FALSE NA 6513.000 0.000 NA   NA
 11666566 924978   M28_Spy0747     FALSE NA 6513.000 0.000 NA   NA
 11808958 924978   M28_Spy0747     FALSE NA 6513.000 0.000 NA   NA
 11524204 924978   M28_Spy0747     FALSE NA 6549.000 0.000 NA   NA
 11666567 924978   M28_Spy0747     FALSE NA 6549.000 0.000 NA   NA
 11808959 924978   M28_Spy0747     FALSE NA 6549.000 0.000 NA   NA
 11524205 924978   M28_Spy0747     FALSE NA 6579.000 0.000 NA   NA
 11666568 924978   M28_Spy0747     FALSE NA 6579.000 0.000 NA   NA
 11808960 924978   M28_Spy0747     FALSE NA 6579.000 0.000 NA   NA
 11524206 924978   M28_Spy0747     FALSE NA 6615.000 0.000 NA   NA
 11666569 924978   M28_Spy0747     FALSE NA 6615.000 0.000 NA   NA
 11808961 924978   M28_Spy0747     FALSE NA 6615.000 0.000 NA   NA
 11524207 924978   M28_Spy0747     FALSE NA 6645.000 0.000 NA   NA
 11666570 924978   M28_Spy0747     FALSE NA 6645.000 0.000 NA   NA
 11808962 924978   M28_Spy0747     FALSE NA 6645.000 0.000 NA   NA
 11524208 924978   M28_Spy0747     FALSE NA 6681.000 0.000 NA   NA
 11666571 924978   M28_Spy0747     FALSE NA 6681.000 0.000 NA   NA
 11808963 924978   M28_Spy0747     FALSE NA 6681.000 0.000 NA   NA
 11524209 924978   M28_Spy0747     FALSE NA 6711.000 0.000 NA   NA
 11666572 924978   M28_Spy0747     FALSE NA 6711.000 0.000 NA   NA
 11808964 924978   M28_Spy0747     FALSE NA 6711.000 0.000 NA   NA
 11524210 924978   M28_Spy0747     FALSE NA 6747.000 0.000 NA   NA
 11666573 924978   M28_Spy0747     FALSE NA 6747.000 0.000 NA   NA
 11808965 924978   M28_Spy0747     FALSE NA 6747.000 0.000 NA   NA
 11524211 924978   M28_Spy0747     FALSE NA 6777.000 0.000 NA   NA
 11666574 924978   M28_Spy0747     FALSE NA 6777.000 0.000 NA   NA
 11808966 924978   M28_Spy0747     FALSE NA 6777.000 0.000 NA   NA
 924983 924984 M28_Spy0752 M28_Spy0753   lepA FALSE 0.073 169.000 0.000 1.000 N NA
 924984 924985 M28_Spy0753 M28_Spy0754 lepA   FALSE 0.038 288.000 0.000 1.000   NA
 924985 924986 M28_Spy0754 M28_Spy0755   msrB FALSE 0.086 186.000 0.000 1.000   NA
 924986 924987 M28_Spy0755 M28_Spy0756 msrB   FALSE 0.130 130.000 0.000 1.000   NA
 924987 924988 M28_Spy0756 M28_Spy0757     FALSE 0.072 207.000 0.000 1.000   NA
 924988 924989 M28_Spy0757 M28_Spy0758   ptsB TRUE 0.998 19.000 0.786 0.020 Y NA
 924989 924990 M28_Spy0758 M28_Spy0759 ptsB ptsC TRUE 0.998 17.000 0.778 0.023 Y NA
 924990 924991 M28_Spy0759 M28_Spy0760 ptsC ptsD TRUE 0.999 -3.000 0.778 0.023 Y NA
 924991 924992 M28_Spy0760 M28_Spy0761 ptsD   TRUE 0.616 136.000 0.222 0.058 N NA
 924992 924993 M28_Spy0761 M28_Spy0762     TRUE 0.998 4.000 0.500 0.013 Y NA
 924993 924994 M28_Spy0762 M28_Spy0763     TRUE 0.985 -6.000 0.571 1.000 N NA
 924994 924995 M28_Spy0763 M28_Spy0764   gabD FALSE 0.096 113.000 0.000 1.000 N NA
 924995 924996 M28_Spy0764 M28_Spy0765 gabD uvrC FALSE 0.105 102.000 0.000 1.000 N NA
 924996 924997 M28_Spy0765 M28_Spy0766 uvrC   FALSE 0.115 185.000 0.004 1.000 N NA
 924997 924998 M28_Spy0766 M28_Spy0767     FALSE 0.342 125.000 0.179 1.000 N NA
 925000 925001 M28_Spy0769 M28_Spy0770 rplJ rplL TRUE 0.986 65.000 0.884 0.027 Y NA
 925001 925002 M28_Spy0770 M28_Spy0771 rplL   FALSE 0.027 356.000 0.000 NA   NA
 925002 925003 M28_Spy0771 M28_Spy0772     TRUE 0.823 -6.000 0.000 NA   NA
 925003 925004 M28_Spy0772 M28_Spy0773     TRUE 0.757 -21.000 0.000 NA   NA
 925004 925005 M28_Spy0773 M28_Spy0774     FALSE 0.364 50.000 0.000 NA   NA
 925005 925006 M28_Spy0774 M28_Spy0775     FALSE 0.297 58.000 0.000 NA   NA
 925006 925007 M28_Spy0775 M28_Spy0776     TRUE 0.447 43.000 0.000 NA   NA
 925007 925008 M28_Spy0776 M28_Spy0777     FALSE 0.045 265.000 0.000 NA   NA
 925008 925009 M28_Spy0777 M28_Spy0778   srtI FALSE 0.227 69.000 0.000 NA   NA
 925009 925010 M28_Spy0778 M28_Spy0779 srtI srtR FALSE 0.114 151.000 0.000 NA   NA
 925010 925011 M28_Spy0779 M28_Spy0780 srtR srtK TRUE 0.998 -22.000 0.741 0.013 Y NA
 925011 925012 M28_Spy0780 M28_Spy0781 srtK srtA FALSE 0.110 157.000 0.000 1.000   NA
 925012 925013 M28_Spy0781 M28_Spy0782 srtA srtT FALSE 0.129 115.000 0.000 1.000   NA
 925013 925014 M28_Spy0782 M28_Spy0783 srtT   TRUE 0.732 -28.000 0.000 1.000   NA
 925014 925015 M28_Spy0783 M28_Spy0784     TRUE 0.742 19.000 0.000 NA   NA
 925015 925016 M28_Spy0784 M28_Spy0785   srtF TRUE 0.677 -51.000 0.000 NA   NA
 925016 925017 M28_Spy0785 M28_Spy0786 srtF srtE TRUE 0.837 6.000 0.000 NA   NA
 925017 925018 M28_Spy0786 M28_Spy0787 srtE srtG TRUE 0.984 3.000 0.490 NA   NA
 925018 925019 M28_Spy0787 M28_Spy0788 srtG   FALSE 0.080 191.000 0.000 NA   NA
 925021 925022 M28_Spy0790 M28_Spy0791     TRUE 0.692 22.000 0.000 NA   NA
 925022 925023 M28_Spy0791 M28_Spy0792     FALSE 0.200 73.000 0.000 NA   NA
 925023 925024 M28_Spy0792 M28_Spy0793     TRUE 0.843 31.000 0.000 0.068   NA
 925024 925025 M28_Spy0793 M28_Spy0794   dacA1 FALSE 0.123 143.000 0.000 1.000   NA
 925027 925028 M28_Spy0796 M28_Spy0797   folC.1 TRUE 0.823 -6.000 0.000 NA   NA
 925028 925029 M28_Spy0797 M28_Spy0798 folC.1 folE TRUE 0.978 11.000 0.057 1.000 Y NA
 925029 925030 M28_Spy0798 M28_Spy0799 folE folP TRUE 0.981 9.000 0.073 1.000 Y NA
 925030 925031 M28_Spy0799 M28_Spy0800 folP folQ TRUE 0.982 7.000 0.094 1.000 Y NA
 925031 925032 M28_Spy0800 M28_Spy0801 folQ folK TRUE 0.984 -3.000 0.142 1.000 Y NA
 925032 925033 M28_Spy0801 M28_Spy0802 folK murB FALSE 0.175 150.000 0.010 1.000 N NA
 925033 925034 M28_Spy0802 M28_Spy0803 murB potA TRUE 0.595 46.000 0.041 1.000 N NA
 925034 925035 M28_Spy0803 M28_Spy0804 potA potB TRUE 0.998 -37.000 0.928 0.038 Y NA
 925035 925036 M28_Spy0804 M28_Spy0805 potB potC TRUE 0.998 -3.000 0.492 0.038 Y NA
 925036 925037 M28_Spy0805 M28_Spy0806 potC   TRUE 0.995 -7.000 0.253 0.038 Y NA
 925038 925039 M28_Spy0807 M28_Spy0808 dpiA dpiB TRUE 0.976 -19.000 0.154 1.000 Y NA
 925040 925041 M28_Spy0809 M28_Spy0810 malP   TRUE 0.975 32.000 0.432 1.000 Y NA
 925043 925044 M28_Spy0812 M28_Spy0813     FALSE 0.124 142.000 0.000 1.000   NA
 925044 925045 M28_Spy0813 M28_Spy0814     FALSE 0.212 163.000 0.071 1.000 N NA
 925045 925046 M28_Spy0814 M28_Spy0815     FALSE 0.247 159.000 0.071 NA   NA
 925046 925047 M28_Spy0815 M28_Spy0816   radC TRUE 0.605 49.000 0.046 NA   NA
 925048 925049 M28_Spy0817 M28_Spy0818     TRUE 0.990 10.000 0.714 1.000   NA
 925049 925050 M28_Spy0818 M28_Spy0819     FALSE 0.135 252.000 0.083 NA   NA
 925050 925051 M28_Spy0819 M28_Spy0820   nifS2 TRUE 0.941 -10.000 0.166 NA   NA
 925051 925052 M28_Spy0820 M28_Spy0821 nifS2   TRUE 0.982 -3.000 0.089 1.000 Y NA
 925052 925053 M28_Spy0821 M28_Spy0822     FALSE 0.336 140.000 0.145 1.000   NA
 925054 925055 M28_Spy0823 M28_Spy0824     TRUE 0.983 -28.000 0.725 1.000   NA
 925055 925056 M28_Spy0824 M28_Spy0825     TRUE 0.943 -3.000 0.150 1.000 N NA
 925056 925057 M28_Spy0825 M28_Spy0826   pta TRUE 0.926 4.000 0.067 1.000 N NA
 925057 925058 M28_Spy0826 M28_Spy0827 pta   TRUE 0.517 109.000 0.031 0.044   NA
 925060 925061 M28_Spy0829 M28_Spy0830 proV   TRUE 0.946 -43.000 0.382 1.000 N NA
 925061 925062 M28_Spy0830 M28_Spy0831   guaC FALSE 0.035 257.000 0.000 1.000 N NA
 925062 925063 M28_Spy0831 M28_Spy0832 guaC xpt FALSE 0.210 305.000 0.009 1.000 Y NA
 925063 925064 M28_Spy0832 M28_Spy0833 xpt   TRUE 0.981 0.000 0.046 1.000 Y NA
 925065 925066 M28_Spy0834 M28_Spy0835 apbE   TRUE 0.695 53.000 0.189 1.000   NA
 925067 925068 M28_Spy0836 M28_Spy0837 tdk2 prfA TRUE 0.724 35.000 0.062 1.000 N NA
 925068 925069 M28_Spy0837 M28_Spy0838 prfA hemK TRUE 0.983 0.000 0.084 1.000 Y NA
 925069 925070 M28_Spy0838 M28_Spy0839 hemK   TRUE 0.950 -46.000 0.029 NA Y NA
 925070 925071 M28_Spy0839 M28_Spy0840     TRUE 0.865 18.000 0.012 NA   NA
 925071 925072 M28_Spy0840 M28_Spy0841   glyA TRUE 0.903 -16.000 0.056 1.000   NA
 925072 925073 M28_Spy0841 M28_Spy0842 glyA   TRUE 0.834 7.000 0.000 NA   NA
 925073 925074 M28_Spy0842 M28_Spy0843     TRUE 0.849 1.000 0.000 NA   NA
 925074 925075 M28_Spy0843 M28_Spy0844     TRUE 0.921 10.000 0.035 NA   NA
 925075 925076 M28_Spy0844 M28_Spy0845     TRUE 0.999 3.000 0.895 0.007 Y NA
 925076 925077 M28_Spy0845 M28_Spy0846   nox FALSE 0.057 241.000 0.000 1.000   NA
 925079 925080 M28_Spy0848 M28_Spy0849 gyrA   TRUE 0.816 20.000 0.013 NA N NA
 925080 925081 M28_Spy0849 M28_Spy0850     FALSE 0.295 80.000 0.039 NA N NA
 925081 925082 M28_Spy0850 M28_Spy0851     FALSE 0.018 487.000 0.000 NA   NA
 925082 925083 M28_Spy0851 M28_Spy0852     TRUE 0.681 -49.000 0.000 NA   NA
 925084 925085 M28_Spy0853 M28_Spy0854     FALSE 0.329 117.000 0.135 1.000   NA
 925085 925086 M28_Spy0854 M28_Spy0855     TRUE 0.951 -3.000 0.146 1.000   NA
 925087 925088 M28_Spy0856 M28_Spy0857     TRUE 0.554 65.000 0.148 1.000   NA
 925088 925089 M28_Spy0857 M28_Spy0858   smf TRUE 0.755 65.000 0.037 1.000 Y NA
 925089 925090 M28_Spy0858 M28_Spy0859 smf   TRUE 0.725 107.000 0.238 1.000 Y NA
 925091 925092 M28_Spy0860 M28_Spy0861     TRUE 0.834 7.000 0.000 NA   NA
 925093 925094 M28_Spy0862 M28_Spy0863   ddh TRUE 0.944 12.000 0.158 NA   NA
 925094 925095 M28_Spy0863 M28_Spy0864 ddh satD FALSE 0.289 105.000 0.056 NA   NA
 925095 925096 M28_Spy0864 M28_Spy0865 satD satE TRUE 0.963 -7.000 0.250 NA   NA
 925096 925097 M28_Spy0865 M28_Spy0866 satE gid FALSE 0.237 98.000 0.008 NA   NA
 925097 925098 M28_Spy0866 M28_Spy0867 gid oadA2 FALSE 0.154 153.000 0.005 1.000 N NA
 925098 925099 M28_Spy0867 M28_Spy0868 oadA2   TRUE 0.824 43.000 0.250 NA   NA
 925099 925100 M28_Spy0868 M28_Spy0869     TRUE 0.986 0.000 0.500 NA   NA
 925100 925101 M28_Spy0869 M28_Spy0870     TRUE 0.916 10.000 0.062 1.000 N NA
 925102 925103 M28_Spy0871 M28_Spy0872   citG TRUE 0.987 -7.000 0.700 1.000 N NA
 925103 925104 M28_Spy0872 M28_Spy0873 citG   TRUE 0.490 158.000 0.400 1.000 N NA
 925105 925106 M28_Spy0874 M28_Spy0875     TRUE 0.579 54.000 0.077 NA   NA
 925106 925107 M28_Spy0875 M28_Spy0876   oadB TRUE 0.900 45.000 0.103 0.004 N NA
 925107 925108 M28_Spy0876 M28_Spy0877 oadB   TRUE 0.988 18.000 0.273 0.002   NA
 925108 925109 M28_Spy0877 M28_Spy0878   citD TRUE 0.836 36.000 0.192 1.000   NA
 925109 925110 M28_Spy0878 M28_Spy0879 citD citE TRUE 0.989 -12.000 0.284 0.002 N NA
 925110 925111 M28_Spy0879 M28_Spy0880 citE citF TRUE 0.988 3.000 0.119 0.001 N NA
 925111 925112 M28_Spy0880 M28_Spy0881 citF citX TRUE 0.852 -70.000 0.138 1.000 N NA
 925112 925113 M28_Spy0881 M28_Spy0882 citX oadA1 TRUE 0.936 -3.000 0.123 1.000 N NA
 925114 925115 M28_Spy0883 M28_Spy0884 citC   FALSE 0.158 89.000 0.000 1.000   NA
 925115 925116 M28_Spy0884 M28_Spy0885   xerD FALSE 0.016 699.000 0.000 1.000   NA
 925118 925119 M28_Spy0887 M28_Spy0888 ffh ylxM TRUE 0.949 9.000 0.151 1.000   NA
 925119 925120 M28_Spy0888 M28_Spy0889 ylxM   TRUE 0.580 89.000 0.032 0.041   NA
 925120 925121 M28_Spy0889 M28_Spy0890     TRUE 0.541 56.000 0.057 NA   NA
 925123 925124 M28_Spy0892 M28_Spy0893     FALSE 0.026 367.000 0.000 1.000   NA
 925124 925125 M28_Spy0893 M28_Spy0894   pdxK FALSE 0.286 98.000 0.040 NA   NA
 925125 925126 M28_Spy0894 M28_Spy0895 pdxK   TRUE 0.914 -22.000 0.142 NA   NA
 925128 925129 M28_Spy0897 M28_Spy0898 rnhB   FALSE 0.032 322.000 0.000 1.000   NA
 925129 925130 M28_Spy0898 M28_Spy0899   fhs.1 FALSE 0.326 85.000 0.094 1.000 N NA
 925130 925131 M28_Spy0899 M28_Spy0900 fhs.1 lplA FALSE 0.369 128.000 0.200 1.000 N NA
 925131 925132 M28_Spy0900 M28_Spy0901 lplA   TRUE 0.768 47.000 0.250 1.000 N NA
 925132 925133 M28_Spy0901 M28_Spy0902     TRUE 0.967 -7.000 0.286 NA   NA
 925133 925134 M28_Spy0902 M28_Spy0903     TRUE 0.933 -7.000 0.107 NA   NA
 925134 925135 M28_Spy0903 M28_Spy0904     TRUE 0.920 42.000 0.571 NA N NA
 925135 925136 M28_Spy0904 M28_Spy0905     TRUE 0.982 -3.000 0.100 NA Y NA
 925136 925137 M28_Spy0905 M28_Spy0906     TRUE 0.907 -3.000 0.019 1.000 N NA
 925138 925139 M28_Spy0907 M28_Spy0908 dpfB dfp TRUE 0.883 -7.000 0.002 1.000   NA
 925139 925140 M28_Spy0908 M28_Spy0909 dfp   TRUE 0.615 46.000 0.019 NA   NA
 925140 925141 M28_Spy0909 M28_Spy0910   pgmA FALSE 0.238 175.000 0.098 NA   NA
 925142 925143 M28_Spy0911 M28_Spy0912     TRUE 0.995 -10.000 0.720 0.037   NA
 925143 925144 M28_Spy0912 M28_Spy0913     TRUE 0.963 -34.000 0.438 1.000   NA
 925144 925145 M28_Spy0913 M28_Spy0914     FALSE 0.261 121.000 0.036 1.000   NA
 925145 925146 M28_Spy0914 M28_Spy0915   cdd TRUE 0.544 94.000 0.300 1.000   NA
 925146 925147 M28_Spy0915 M28_Spy0916 cdd   FALSE 0.011 651.000 0.000 1.000 N NA
 925148 925149 M28_Spy0917 M28_Spy0918 coaA rpsT FALSE 0.339 69.000 0.014 1.000 N NA
 925150 925151 M28_Spy0919 M28_Spy0920 ciaH ciaR TRUE 0.995 -7.000 0.606 1.000 Y NA
 925151 925152 M28_Spy0920 M28_Spy0921 ciaR pepN FALSE 0.061 347.000 0.061 1.000 N NA
 925152 925153 M28_Spy0921 M28_Spy0922 pepN   TRUE 0.840 -3.000 0.000 NA   NA
 925153 925154 M28_Spy0922 M28_Spy0923   phoU TRUE 0.668 -61.000 0.000 NA   NA
 925154 925155 M28_Spy0923 M28_Spy0924 phoU pstB TRUE 0.896 68.000 0.413 NA Y NA
 925155 925156 M28_Spy0924 M28_Spy0925 pstB pstB2 TRUE 0.999 10.000 0.542 0.001 Y NA
 925156 925157 M28_Spy0925 M28_Spy0926 pstB2 pstA TRUE 0.998 16.000 0.490 0.002 Y NA
 925157 925158 M28_Spy0926 M28_Spy0927 pstA pstC TRUE 0.999 -10.000 0.907 0.002 Y NA
 925158 925159 M28_Spy0927 M28_Spy0928 pstC pstS TRUE 0.720 97.000 0.206 1.000 Y NA
 925159 925160 M28_Spy0928 M28_Spy0929 pstS   TRUE 0.454 139.000 0.303 NA N NA
 925160 925161 M28_Spy0929 M28_Spy0930     TRUE 0.962 3.000 0.229 NA N NA
 925161 925162 M28_Spy0930 M28_Spy0931     TRUE 0.952 -31.000 0.337 NA   NA
 925162 925163 M28_Spy0931 M28_Spy0932     TRUE 0.943 -10.000 0.169 NA   NA
 925163 925164 M28_Spy0932 M28_Spy0933   mreA TRUE 0.596 43.000 0.017 1.000 N NA
 925164 925165 M28_Spy0933 M28_Spy0934 mreA truB TRUE 0.904 29.000 0.308 1.000 N NA
 925165 925166 M28_Spy0934 M28_Spy0935 truB   FALSE 0.233 116.000 0.014 NA   NA
 925166 925167 M28_Spy0935 M28_Spy0936     FALSE 0.293 97.000 0.045 NA   NA
 925167 925168 M28_Spy0936 M28_Spy0937     TRUE 0.920 11.000 0.045 NA   NA
 925168 925169 M28_Spy0937 M28_Spy0938     FALSE 0.368 92.000 0.121 1.000   NA
 925169 925170 M28_Spy0938 M28_Spy0939     TRUE 0.991 15.000 0.438 1.000 Y NA
 925172 925173 M28_Spy0941 M28_Spy0942     TRUE 0.845 3.000 0.000 NA   NA
 925173 925174 M28_Spy0942 M28_Spy0943     FALSE 0.384 163.000 0.238 NA   NA
 925174 925175 M28_Spy0943 M28_Spy0944     TRUE 0.988 8.000 0.600 NA   NA
 925175 925176 M28_Spy0944 M28_Spy0945     TRUE 0.936 41.000 0.600 NA   NA
 925176 925177 M28_Spy0945 M28_Spy0946     TRUE 0.915 13.000 0.060 NA   NA
 925177 925178 M28_Spy0946 M28_Spy0947     TRUE 0.942 11.000 0.143 NA   NA
 925178 925179 M28_Spy0947 M28_Spy0948     TRUE 0.897 37.000 0.357 NA   NA
 925179 925180 M28_Spy0948 M28_Spy0949   pcrA FALSE 0.027 363.000 0.000 1.000   NA
 925180 925181 M28_Spy0949 M28_Spy0951 pcrA   FALSE 0.025 368.000 0.000 NA   NA
 925182 925183 M28_Spy0950 M28_Spy0952     TRUE 0.471 120.000 0.060 0.074 N NA
 925184 925185 M28_Spy0953 M28_Spy0954 cfa   FALSE 0.024 370.000 0.000 NA   NA
 925185 925186 M28_Spy0954 M28_Spy0955     TRUE 0.977 16.000 0.154 1.000 Y NA
 925186 925187 M28_Spy0955 M28_Spy0956     TRUE 0.982 10.000 0.130 1.000 Y NA
 925187 925188 M28_Spy0956 M28_Spy0957     FALSE 0.220 107.000 0.018 1.000 N NA
 925188 925189 M28_Spy0957 M28_Spy0958   glmS FALSE 0.114 196.000 0.008 1.000 N NA
 925189 925190 M28_Spy0958 M28_Spy0959 glmS sipC FALSE 0.143 176.000 0.011 1.000 N NA
 925190 925191 M28_Spy0959 M28_Spy0960 sipC pyk FALSE 0.140 218.000 0.072 1.000 N NA
 925191 925192 M28_Spy0960 M28_Spy0961 pyk pfk TRUE 0.956 63.000 0.261 0.006 Y NA
 925192 925193 M28_Spy0961 M28_Spy0962 pfk dnaE FALSE 0.354 80.000 0.098 1.000 N NA
 925194 925195 M28_Spy0963 M28_Spy0964     TRUE 0.980 0.000 0.412 1.000 N NA
 925195 925196 M28_Spy0964 M28_Spy0965     TRUE 0.981 10.000 0.471 NA   NA
 925197 925198 M28_Spy0966 M28_Spy0967     FALSE 0.016 591.000 0.000 NA   NA
 925199 925200 M28_Spy0968 M28_Spy0969 spd1 speC FALSE 0.132 111.000 0.000 1.000   NA
 925201 925202 M28_Spy0970 M28_Spy0971     FALSE 0.126 112.000 0.000 NA   NA
 925202 925203 M28_Spy0971 M28_Spy0972     TRUE 0.990 -3.000 0.667 NA   NA
 925203 925204 M28_Spy0972 M28_Spy0973     TRUE 0.821 11.000 0.000 NA   NA
 925204 925205 M28_Spy0973 M28_Spy0974     TRUE 0.845 3.000 0.000 NA   NA
 925205 925206 M28_Spy0974 M28_Spy0975     TRUE 0.791 14.000 0.000 NA   NA
 925206 925207 M28_Spy0975 M28_Spy0976     TRUE 0.821 11.000 0.000 NA   NA
 925207 925208 M28_Spy0976 M28_Spy0977     TRUE 0.787 -13.000 0.000 NA   NA
 925208 925209 M28_Spy0977 M28_Spy0978     TRUE 0.840 -3.000 0.000 NA   NA
 925209 925210 M28_Spy0978 M28_Spy0979     TRUE 0.995 -3.000 1.000 NA   NA
 925210 925211 M28_Spy0979 M28_Spy0980     TRUE 0.567 32.000 0.000 NA   NA
 925211 925212 M28_Spy0980 M28_Spy0981     TRUE 0.784 15.000 0.000 NA   NA
 925212 925213 M28_Spy0981 M28_Spy0982     TRUE 0.819 48.000 0.312 NA   NA
 925213 925214 M28_Spy0982 M28_Spy0983     TRUE 0.937 9.000 0.093 NA   NA
 925214 925215 M28_Spy0983 M28_Spy0984     TRUE 0.928 10.000 0.062 NA   NA
 925215 925216 M28_Spy0984 M28_Spy0985     TRUE 0.990 -3.000 0.667 NA   NA
 925216 925217 M28_Spy0985 M28_Spy0986     TRUE 0.928 -19.000 0.167 NA   NA
 925217 925218 M28_Spy0986 M28_Spy0987     TRUE 0.972 -3.000 0.286 NA   NA
 925218 925219 M28_Spy0987 M28_Spy0988     TRUE 0.982 2.000 0.429 NA   NA
 925219 925220 M28_Spy0988 M28_Spy0989     TRUE 0.969 10.000 0.286 NA   NA
 925220 925221 M28_Spy0989 M28_Spy0990     TRUE 0.973 3.000 0.286 NA   NA
 925221 925222 M28_Spy0990 M28_Spy0991     TRUE 0.933 10.000 0.077 NA   NA
 925222 925223 M28_Spy0991 M28_Spy0992     FALSE 0.124 135.000 0.000 NA   NA
 925223 925224 M28_Spy0992 M28_Spy0993     TRUE 0.845 3.000 0.000 NA   NA
 925224 925225 M28_Spy0993 M28_Spy0994     FALSE 0.220 70.000 0.000 NA   NA
 925225 925226 M28_Spy0994 M28_Spy0995     TRUE 0.842 4.000 0.000 NA   NA
 925226 925227 M28_Spy0995 M28_Spy0996     TRUE 0.763 -19.000 0.000 NA   NA
 925227 925228 M28_Spy0996 M28_Spy0997     TRUE 0.962 12.000 0.250 NA   NA
 925228 925229 M28_Spy0997 M28_Spy0998     TRUE 0.952 -28.000 0.000 0.002   NA
 925231 925232 M28_Spy1000 M28_Spy1001     FALSE 0.350 51.000 0.000 NA   NA
 925232 925233 M28_Spy1001 M28_Spy1002     FALSE 0.032 306.000 0.000 NA   NA
 925233 925234 M28_Spy1002 M28_Spy1003     FALSE 0.019 449.000 0.000 NA   NA
 925234 925235 M28_Spy1003 M28_Spy1004     TRUE 0.801 -10.000 0.000 NA   NA
 925235 925236 M28_Spy1004 M28_Spy1005     TRUE 0.665 -64.000 0.000 NA   NA
 925236 925237 M28_Spy1005 M28_Spy1006     TRUE 0.840 -3.000 0.000 NA   NA
 925237 925238 M28_Spy1006 M28_Spy1007     TRUE 0.730 -27.000 0.000 NA   NA
 925238 925239 M28_Spy1007 M28_Spy1008     TRUE 0.840 -3.000 0.000 NA   NA
 925239 925240 M28_Spy1008 M28_Spy1009     TRUE 0.840 -3.000 0.000 NA   NA
 925240 925241 M28_Spy1009 M28_Spy1010     TRUE 0.774 -16.000 0.000 NA   NA
 925241 925242 M28_Spy1010 M28_Spy1011     TRUE 0.887 20.000 0.080 NA   NA
 925242 925243 M28_Spy1011 M28_Spy1012     FALSE 0.047 257.000 0.000 NA   NA
 925243 925244 M28_Spy1012 M28_Spy1013     TRUE 0.905 18.000 0.100 NA   NA
 925244 925245 M28_Spy1013 M28_Spy1014     TRUE 0.989 5.000 0.600 NA   NA
 925245 925246 M28_Spy1014 M28_Spy1015     TRUE 0.709 72.000 0.400 NA   NA
 925246 925247 M28_Spy1015 M28_Spy1016     TRUE 0.961 -3.000 0.200 NA   NA
 925247 925248 M28_Spy1016 M28_Spy1017     TRUE 0.840 -3.000 0.000 NA   NA
 925248 925249 M28_Spy1017 M28_Spy1018     TRUE 0.849 0.000 0.000 NA   NA
 925249 925250 M28_Spy1018 M28_Spy1019     FALSE 0.168 81.000 0.000 NA   NA
 925250 925251 M28_Spy1019 M28_Spy1020     TRUE 0.840 -3.000 0.000 NA   NA
 925251 925252 M28_Spy1020 M28_Spy1021     FALSE 0.187 79.000 0.000 1.000   NA
 925253 925254 M28_Spy1022 M28_Spy1023     FALSE 0.115 150.000 0.000 NA   NA
 925254 925255 M28_Spy1023 M28_Spy1024     FALSE 0.070 205.000 0.000 NA   NA
 925261 925262 M28_Spy1030 M28_Spy1031     TRUE 0.808 13.000 0.000 1.000   NA
 925264 925265 M28_Spy1033 M28_Spy1034     FALSE 0.125 132.000 0.000 NA   NA
 925265 925266 M28_Spy1034 M28_Spy1035     FALSE 0.123 118.000 0.000 NA   NA
 925267 925268 M28_Spy1036 M28_Spy1037 glgP malM TRUE 0.985 35.000 0.289 0.021 Y NA
 925268 925269 M28_Spy1037 M28_Spy1038 malM malR TRUE 0.637 116.000 0.538 1.000 N NA
 925270 925271 M28_Spy1039 M28_Spy1040 malE malF TRUE 0.853 274.000 0.690 0.036 Y NA
 925271 925272 M28_Spy1040 M28_Spy1041 malF malG TRUE 0.999 0.000 0.793 0.036 Y NA
 925272 925273 M28_Spy1041 M28_Spy1042 malG   TRUE 0.513 155.000 0.069 0.039   NA
 925274 925275 M28_Spy1043 M28_Spy1044 malA malD TRUE 0.914 22.000 0.200 NA   NA
 925275 925276 M28_Spy1044 M28_Spy1045 malD malC TRUE 0.999 -3.000 0.714 0.036 Y NA
 925276 925277 M28_Spy1045 M28_Spy1046 malC amyA TRUE 0.705 75.000 0.067 1.000 Y NA
 925277 925278 M28_Spy1046 M28_Spy1047 amyA amyB TRUE 0.988 -25.000 0.024 0.008 Y NA
 925278 925279 M28_Spy1047 M28_Spy1048 amyB malX TRUE 0.551 154.000 0.065 1.000 Y NA
 925281 925282 M28_Spy1050 M28_Spy1051   dltD TRUE 0.736 31.000 0.042 NA N NA
 925282 925283 M28_Spy1051 M28_Spy1052 dltD   TRUE 0.977 -7.000 0.409 NA   NA
 925283 925284 M28_Spy1052 M28_Spy1053     TRUE 0.965 18.000 0.387 NA   NA
 925284 925285 M28_Spy1053 M28_Spy1054   dltA TRUE 0.979 -3.000 0.435 NA N NA
 925285 925286 M28_Spy1054 M28_Spy1055 dltA   TRUE 0.984 12.000 0.549 NA   NA
 925286 925287 M28_Spy1055 M28_Spy1056   uvrB FALSE 0.045 264.000 0.000 NA   NA
 925288 925289 M28_Spy1057 M28_Spy1058 glnH glnQ.2 TRUE 0.992 0.000 0.326 1.000 Y NA
 925290 925291 M28_Spy1059 M28_Spy1060     TRUE 0.958 -3.000 0.182 NA   NA
 925291 925292 M28_Spy1060 M28_Spy1061     FALSE 0.378 178.000 0.273 NA   NA
 925292 925293 M28_Spy1061 M28_Spy1062     TRUE 0.985 -3.000 0.500 NA   NA
 925293 925294 M28_Spy1062 M28_Spy1063     TRUE 0.998 3.000 0.500 0.014 Y NA
 925294 925295 M28_Spy1063 M28_Spy1064     TRUE 0.976 -7.000 0.064 0.014 N NA
 925295 925296 M28_Spy1064 M28_Spy1065     FALSE 0.303 106.000 0.064 1.000   NA
 925296 925297 M28_Spy1065 M28_Spy1066   bglA.2 TRUE 0.984 9.000 0.500 1.000   NA
 925299 925300 M28_Spy1068 M28_Spy1069   obgE FALSE 0.364 69.000 0.009 NA   NA
 925300 925301 M28_Spy1069 M28_Spy1070 obgE   TRUE 0.423 63.000 0.011 NA   NA
 925302 925303 M28_Spy1071 M28_Spy1072     TRUE 0.969 21.000 0.000 0.064 Y NA
 925308 925309 M28_Spy1077 M28_Spy1078     FALSE 0.158 85.000 0.000 NA   NA
 925309 925310 M28_Spy1078 M28_Spy1079     FALSE 0.021 421.000 0.000 1.000   NA
 925310 925311 M28_Spy1079 M28_Spy1080     TRUE 0.606 97.000 0.400 NA   NA
 925311 925312 M28_Spy1080 M28_Spy1081     FALSE 0.015 698.000 0.000 NA   NA
 925312 925313 M28_Spy1081 M28_Spy1082     TRUE 0.643 126.000 0.500 NA   NA
 925313 925314 M28_Spy1082 M28_Spy1083     FALSE 0.020 431.000 0.000 NA   NA
 925314 925315 M28_Spy1083 M28_Spy1084     FALSE 0.015 725.000 0.000 NA   NA
 925315 925316 M28_Spy1084 M28_Spy1085     FALSE 0.018 487.000 0.000 NA   NA
 925316 925317 M28_Spy1085 M28_Spy1086     FALSE 0.014 844.000 0.000 NA   NA
 925317 925318 M28_Spy1086 M28_Spy1087     FALSE 0.134 105.000 0.000 NA   NA
 925318 925319 M28_Spy1087 M28_Spy1088     TRUE 0.666 68.000 0.286 NA   NA
 925319 925320 M28_Spy1088 M28_Spy1089     TRUE 0.961 20.000 0.400 NA   NA
 925320 925321 M28_Spy1089 M28_Spy1090     FALSE 0.107 156.000 0.000 NA   NA
 925321 925322 M28_Spy1090 M28_Spy1091     TRUE 0.608 49.000 0.093 1.000 N NA
 925322 925323 M28_Spy1091 M28_Spy1092   aroK FALSE 0.165 208.000 0.111 1.000 N NA
 925323 925324 M28_Spy1092 M28_Spy1093 aroK   TRUE 0.973 -7.000 0.012 1.000 Y NA
 925324 925325 M28_Spy1093 M28_Spy1094     FALSE 0.203 111.000 0.003 1.000   NA
 925325 925326 M28_Spy1094 M28_Spy1095   map TRUE 0.980 2.000 0.373 1.000   NA
 925326 925327 M28_Spy1095 M28_Spy1096 map   TRUE 0.943 16.000 0.235 1.000 N NA
 925327 925328 M28_Spy1096 M28_Spy1097     TRUE 0.974 -3.000 0.342 1.000 N NA
 925328 925329 M28_Spy1097 M28_Spy1098   grab FALSE 0.058 238.000 0.000 1.000   NA
 925329 925330 M28_Spy1098 M28_Spy1099 grab murZ FALSE 0.028 358.000 0.000 1.000   NA
 925330 925331 M28_Spy1099 M28_Spy1100 murZ metK2 FALSE 0.166 174.000 0.026 1.000 N NA
 925331 925332 M28_Spy1100 M28_Spy1101 metK2 inlA FALSE 0.017 536.000 0.000 1.000   NA
 925334 925335 M28_Spy1103 M28_Spy1104     FALSE 0.158 85.000 0.000 NA   NA
 925335 925336 M28_Spy1104 M28_Spy1105     FALSE 0.380 261.000 0.000 0.063 Y NA
 925336 925337 M28_Spy1105 M28_Spy1106     TRUE 0.915 0.000 0.030 NA N NA
 925339 925340 M28_Spy1108 M28_Spy1109   udk FALSE 0.295 80.000 0.010 NA   NA
 925342 925343 M28_Spy1111 M28_Spy1112   gapN FALSE 0.246 95.000 0.028 1.000 N NA
 925343 925344 M28_Spy1112 M28_Spy1113 gapN pstI FALSE 0.157 185.000 0.035 1.000 N NA
 925344 925345 M28_Spy1113 M28_Spy1114 pstI ptsH TRUE 0.996 5.000 0.240 0.013 Y NA
 925346 925347 M28_Spy1115 M28_Spy1116 nrdH nrdE.2 TRUE 0.972 20.000 0.562 1.000 N NA
 925349 925350 M28_Spy1118 M28_Spy1119 nrdF.2   TRUE 0.876 -25.000 0.083 1.000 N NA
 925351 925352 M28_Spy1123 M28_Spy1124     TRUE 0.893 19.000 0.077 NA   NA
 925352 925353 M28_Spy1124 M28_Spy1125     TRUE 0.978 -3.000 0.362 NA   NA
 925353 925354 M28_Spy1125 M28_Spy1126   alaS FALSE 0.021 346.000 0.000 1.000 N NA
 925354 925355 M28_Spy1126 M28_Spy1127 alaS surA FALSE 0.017 387.000 0.000 1.000 N NA
 925355 925356 M28_Spy1127 M28_Spy1128 surA   TRUE 0.434 63.000 0.012 1.000   NA
 925356 925357 M28_Spy1128 M28_Spy1129     FALSE 0.407 66.000 0.012 1.000   NA
 925357 925358 M28_Spy1129 M28_Spy1130   pepB FALSE 0.017 376.000 0.000 1.000 N NA
 925358 925359 M28_Spy1130 M28_Spy1131 pepB   TRUE 0.951 13.000 0.204 NA   NA
 925359 925360 M28_Spy1131 M28_Spy1132     FALSE 0.076 295.000 0.020 NA   NA
 925360 925361 M28_Spy1132 M28_Spy1133   nagB FALSE 0.231 119.000 0.051 1.000 N NA
 925362 925363 M28_Spy1134 M28_Spy1135 queA   TRUE 0.897 7.000 0.004 NA   NA
 925364 925365 M28_Spy1136 M28_Spy1137     TRUE 0.840 -3.000 0.000 NA   NA
 925365 925366 M28_Spy1137 M28_Spy1138     FALSE 0.309 56.000 0.000 NA   NA
 925366 925367 M28_Spy1138 M28_Spy1139   sodA FALSE 0.099 167.000 0.000 NA   NA
 925367 925368 M28_Spy1139 M28_Spy1140 sodA   FALSE 0.221 96.000 0.012 1.000 N NA
 925368 925369 M28_Spy1140 M28_Spy1141   comEC.1 TRUE 0.523 71.000 0.163 1.000   NA
 925369 925370 M28_Spy1141 M28_Spy1142 comEC.1 comEC.2 TRUE 0.840 -3.000 0.000 NA   NA
 925370 925371 M28_Spy1142 M28_Spy1143 comEC.2 comEA TRUE 0.763 -19.000 0.000 NA   NA
 925371 925372 M28_Spy1143 M28_Spy1145 comEA   FALSE 0.122 199.000 0.014 1.000 N NA
 925373 925374 M28_Spy1144 M28_Spy1146     TRUE 0.954 -10.000 0.209 1.000   NA
 925375 925376 M28_Spy1147 M28_Spy1148   deaD FALSE 0.182 127.000 0.007 1.000 N NA
 925376 925377 M28_Spy1148 M28_Spy1149 deaD prfC FALSE 0.149 307.000 0.000 1.000 Y NA
 925377 925378 M28_Spy1149 M28_Spy1150 prfC   FALSE 0.086 248.000 0.003 NA   NA
 925378 925379 M28_Spy1150 M28_Spy1151   murF FALSE 0.380 80.000 0.078 NA   NA
 925379 925380 M28_Spy1151 M28_Spy1152 murF ddlA TRUE 0.709 199.000 0.046 0.009 Y NA
 925380 925381 M28_Spy1152 M28_Spy1153 ddlA recR FALSE 0.209 101.000 0.010 1.000 N NA
 925381 925382 M28_Spy1153 M28_Spy1154 recR   FALSE 0.396 47.000 0.000 NA   NA
 925382 925383 M28_Spy1154 M28_Spy1155     FALSE 0.016 560.000 0.000 NA   NA
 925383 925384 M28_Spy1155 M28_Spy1156     TRUE 0.875 22.000 0.105 NA   NA
 925384 925385 M28_Spy1156 M28_Spy1157     FALSE 0.264 161.000 0.107 NA   NA
 925385 925386 M28_Spy1157 M28_Spy1158   gpmA FALSE 0.243 107.000 0.012 1.000   NA
 925388 925389 M28_Spy1160 M28_Spy1161     FALSE 0.368 72.000 0.018 NA   NA
 925389 925390 M28_Spy1161 M28_Spy1162     FALSE 0.021 354.000 0.000 1.000 N NA
 925390 925391 M28_Spy1162 M28_Spy1163     FALSE 0.383 99.000 0.156 NA   NA
 925391 925392 M28_Spy1163 M28_Spy1164     TRUE 0.988 -22.000 0.828 NA   NA
 925392 925393 M28_Spy1164 M28_Spy1165     TRUE 0.932 -25.000 0.203 NA   NA
 925393 925394 M28_Spy1165 M28_Spy1166     FALSE 0.064 216.000 0.000 NA   NA
 925394 925395 M28_Spy1166 M28_Spy1167   recN FALSE 0.099 172.000 0.000 1.000   NA
 925395 925396 M28_Spy1167 M28_Spy1168 recN argR1 TRUE 0.854 19.000 0.037 1.000 N NA
 925396 925397 M28_Spy1168 M28_Spy1169 argR1   TRUE 0.824 -46.000 0.048 1.000 N NA
 925397 925398 M28_Spy1169 M28_Spy1170   fps TRUE 0.908 -7.000 0.058 1.000 N NA
 925398 925399 M28_Spy1170 M28_Spy1171 fps xseB TRUE 0.936 0.000 0.100 1.000 N NA
 925399 925400 M28_Spy1171 M28_Spy1172 xseB   TRUE 0.997 -22.000 0.412 0.001 Y NA
 925400 925401 M28_Spy1172 M28_Spy1173   folD FALSE 0.227 138.000 0.045 1.000 N NA
 925401 925402 M28_Spy1173 M28_Spy1174 folD   FALSE 0.118 202.000 0.013 1.000 N NA
 925402 925403 M28_Spy1174 M28_Spy1175   phr FALSE 0.131 169.000 0.004 1.000 N NA
 925403 925404 M28_Spy1175 M28_Spy1176 phr artP FALSE 0.095 125.000 0.000 1.000 N NA
 925404 925405 M28_Spy1176 M28_Spy1177 artP artQ TRUE 0.996 -3.000 0.640 1.000 Y NA
 925405 925406 M28_Spy1177 M28_Spy1178 artQ   FALSE 0.263 127.000 0.044 NA   NA
 925407 925408 M28_Spy1179 M28_Spy1180 clpE mutT FALSE 0.260 128.000 0.079 1.000 N NA
 925408 925409 M28_Spy1180 M28_Spy1181 mutT   TRUE 0.632 51.000 0.114 NA   NA
 925410 925411 M28_Spy1182 M28_Spy1183 ileS divIVAS FALSE 0.069 273.000 0.012 NA N NA
 925411 925412 M28_Spy1183 M28_Spy1184 divIVAS   TRUE 0.987 10.000 0.579 NA   NA
 925412 925413 M28_Spy1184 M28_Spy1185     TRUE 0.974 0.000 0.287 1.000   NA
 925413 925414 M28_Spy1185 M28_Spy1186     TRUE 0.978 5.000 0.370 NA   NA
 925414 925415 M28_Spy1186 M28_Spy1187     TRUE 0.962 0.000 0.194 NA   NA
 925415 925416 M28_Spy1187 M28_Spy1188   ftsZ TRUE 0.928 3.000 0.030 NA   NA
 925416 925417 M28_Spy1188 M28_Spy1189 ftsZ ftsA TRUE 0.984 24.000 0.460 1.000 Y NA
 925417 925418 M28_Spy1189 M28_Spy1190 ftsA divIB FALSE 0.357 212.000 0.389 NA N NA
 925418 925419 M28_Spy1190 M28_Spy1191 divIB murG TRUE 0.982 1.000 0.072 NA Y NA
 925419 925420 M28_Spy1191 M28_Spy1192 murG murD TRUE 0.968 -21.000 0.060 1.000 Y NA
 925420 925421 M28_Spy1192 M28_Spy1193 murD   FALSE 0.049 356.000 0.006 NA   NA
 925421 925422 M28_Spy1193 M28_Spy1194   typA FALSE 0.233 122.000 0.015 NA   NA
 925422 925423 M28_Spy1194 M28_Spy1195 typA   FALSE 0.112 183.000 0.003 NA N NA
 925423 925424 M28_Spy1195 M28_Spy1196   glcK TRUE 0.915 10.000 0.064 NA N NA
 925424 925425 M28_Spy1196 M28_Spy1197 glcK   TRUE 0.984 5.000 0.496 NA   NA
 925425 925426 M28_Spy1197 M28_Spy1198   dpr FALSE 0.274 124.000 0.058 NA   NA
 925428 925429 M28_Spy1200 M28_Spy1201     TRUE 0.921 4.000 0.016 NA   NA
 925429 925430 M28_Spy1201 M28_Spy1202     FALSE 0.043 271.000 0.000 NA   NA
 925430 925431 M28_Spy1202 M28_Spy1203     TRUE 0.580 31.000 0.000 NA   NA
 925431 925432 M28_Spy1203 M28_Spy1204     FALSE 0.019 367.000 0.000 1.000 N NA
 925432 925433 M28_Spy1204 M28_Spy1205     TRUE 0.889 -13.000 0.052 1.000 N NA
 925433 925434 M28_Spy1205 M28_Spy1206     TRUE 0.968 -10.000 0.367 1.000 N NA
 925434 925435 M28_Spy1206 M28_Spy1207   asnA FALSE 0.176 123.000 0.006 1.000 N NA
 925435 925436 M28_Spy1207 M28_Spy1208 asnA arcC FALSE 0.144 313.000 0.000 1.000 Y NA
 925436 925437 M28_Spy1208 M28_Spy1209 arcC   TRUE 0.960 20.000 0.035 1.000 Y NA
 925437 925438 M28_Spy1209 M28_Spy1210     TRUE 0.920 17.000 0.140 1.000   NA
 925438 925439 M28_Spy1210 M28_Spy1211   arcB FALSE 0.252 170.000 0.104 1.000   NA
 925439 925440 M28_Spy1211 M28_Spy1212 arcB   TRUE 0.749 40.000 0.104 1.000   NA
 925440 925441 M28_Spy1212 M28_Spy1213   arcA FALSE 0.304 100.000 0.056 1.000   NA
 925441 925442 M28_Spy1213 M28_Spy1214 arcA   FALSE 0.031 274.000 0.000 1.000 N NA
 925444 925445 M28_Spy1216 M28_Spy1217     TRUE 0.913 4.000 0.009 NA   NA
 925445 925446 M28_Spy1217 M28_Spy1218     FALSE 0.328 73.000 0.007 1.000   NA
 925446 925447 M28_Spy1218 M28_Spy1219     TRUE 0.995 -3.000 0.480 0.012   NA
 925447 925448 M28_Spy1219 M28_Spy1220     FALSE 0.053 245.000 0.000 NA   NA
 925448 925449 M28_Spy1220 M28_Spy1221     FALSE 0.253 65.000 0.000 NA   NA
 925449 925450 M28_Spy1221 M28_Spy1222   slaA TRUE 0.989 -6.000 0.667 NA   NA
 925450 925451 M28_Spy1222 M28_Spy1223 slaA speK FALSE 0.019 476.000 0.000 1.000   NA
 925451 925452 M28_Spy1223 M28_Spy1224 speK   FALSE 0.036 289.000 0.000 NA   NA
 925452 925453 M28_Spy1224 M28_Spy1225     TRUE 0.954 -12.000 0.231 NA   NA
 925453 925454 M28_Spy1225 M28_Spy1226     FALSE 0.122 140.000 0.000 NA   NA
 925454 925455 M28_Spy1226 M28_Spy1227     FALSE 0.127 111.000 0.000 NA   NA
 925455 925456 M28_Spy1227 M28_Spy1228     TRUE 0.990 -3.000 0.667 NA   NA
 925456 925457 M28_Spy1228 M28_Spy1229     TRUE 0.821 11.000 0.000 NA   NA
 925457 925458 M28_Spy1229 M28_Spy1230     TRUE 0.995 3.000 1.000 NA   NA
 925458 925459 M28_Spy1230 M28_Spy1231     TRUE 0.994 12.000 1.000 NA   NA
 925459 925460 M28_Spy1231 M28_Spy1232     TRUE 0.821 11.000 0.000 NA   NA
 925460 925461 M28_Spy1232 M28_Spy1233     TRUE 0.787 -13.000 0.000 NA   NA
 925461 925462 M28_Spy1233 M28_Spy1234     TRUE 0.840 -3.000 0.000 NA   NA
 925462 925463 M28_Spy1234 M28_Spy1235     TRUE 0.961 -3.000 0.200 NA   NA
 925463 925464 M28_Spy1235 M28_Spy1236     TRUE 0.965 -3.000 0.222 NA   NA
 925464 925465 M28_Spy1236 M28_Spy1237     TRUE 0.885 -31.000 0.100 NA   NA
 925465 925466 M28_Spy1237 M28_Spy1238     TRUE 0.951 4.000 0.150 NA   NA
 925466 925467 M28_Spy1238 M28_Spy1239     TRUE 0.972 39.000 1.000 NA   NA
 925467 925468 M28_Spy1239 M28_Spy1240     TRUE 0.995 0.000 1.000 NA   NA
 925468 925469 M28_Spy1240 M28_Spy1241     TRUE 0.959 -3.000 0.188 NA   NA
 925469 925470 M28_Spy1241 M28_Spy1242     TRUE 0.983 0.000 0.438 NA   NA
 925470 925471 M28_Spy1242 M28_Spy1243     TRUE 0.948 -37.000 0.333 NA   NA
 925471 925472 M28_Spy1243 M28_Spy1244     FALSE 0.322 54.000 0.000 NA   NA
 925472 925473 M28_Spy1244 M28_Spy1245     TRUE 0.842 4.000 0.000 NA   NA
 925473 925474 M28_Spy1245 M28_Spy1246     FALSE 0.125 126.000 0.000 NA   NA
 925474 925475 M28_Spy1246 M28_Spy1247     FALSE 0.272 62.000 0.000 NA   NA
 925475 925476 M28_Spy1247 M28_Spy1248     TRUE 0.723 -28.000 0.000 NA   NA
 925476 925477 M28_Spy1248 M28_Spy1249     TRUE 0.987 5.000 0.567 NA   NA
 925477 925478 M28_Spy1249 M28_Spy1250     TRUE 0.882 -94.000 0.167 NA   NA
 925478 925479 M28_Spy1250 M28_Spy1251     TRUE 0.456 83.000 0.182 NA   NA
 925479 925480 M28_Spy1251 M28_Spy1252     TRUE 0.840 -3.000 0.000 NA   NA
 925480 925481 M28_Spy1252 M28_Spy1253     FALSE 0.279 61.000 0.000 NA   NA
 925481 925482 M28_Spy1253 M28_Spy1254     FALSE 0.124 123.000 0.000 NA   NA
 925482 925483 M28_Spy1254 M28_Spy1255     TRUE 0.765 -21.000 0.000 1.000   NA
 925485 925486 M28_Spy1257 M28_Spy1258     FALSE 0.117 146.000 0.000 NA   NA
 925486 925487 M28_Spy1258 M28_Spy1259     FALSE 0.020 429.000 0.000 NA   NA
 925487 925488 M28_Spy1259 M28_Spy1260     TRUE 0.840 -3.000 0.000 NA   NA
 925488 925489 M28_Spy1260 M28_Spy1261     TRUE 0.840 -3.000 0.000 NA   NA
 925489 925490 M28_Spy1261 M28_Spy1262     TRUE 0.827 10.000 0.000 NA   NA
 925490 925491 M28_Spy1262 M28_Spy1263     TRUE 0.710 -33.000 0.000 NA   NA
 925491 925492 M28_Spy1263 M28_Spy1264     TRUE 0.823 -6.000 0.000 NA   NA
 925492 925493 M28_Spy1264 M28_Spy1265     TRUE 0.995 -3.000 1.000 NA   NA
 925493 925494 M28_Spy1265 M28_Spy1266     TRUE 0.922 -3.000 0.018 NA   NA
 925494 925495 M28_Spy1266 M28_Spy1267     TRUE 0.849 0.000 0.000 NA   NA
 925495 925496 M28_Spy1267 M28_Spy1268   ssb2.1 TRUE 0.837 6.000 0.000 NA   NA
 925496 925497 M28_Spy1268 M28_Spy1269 ssb2.1 ssb1 TRUE 0.936 -7.000 0.125 NA   NA
 925497 925498 M28_Spy1269 M28_Spy1270 ssb1   TRUE 0.948 1.000 0.125 NA   NA
 925498 925499 M28_Spy1270 M28_Spy1271     TRUE 0.936 22.000 0.286 NA   NA
 925499 925500 M28_Spy1271 M28_Spy1272     TRUE 0.801 -10.000 0.000 NA   NA
 925500 925501 M28_Spy1272 M28_Spy1273     TRUE 0.840 -3.000 0.000 NA   NA
 925501 925502 M28_Spy1273 M28_Spy1274     TRUE 0.763 -19.000 0.000 NA   NA
 925502 925503 M28_Spy1274 M28_Spy1275     FALSE 0.240 122.000 0.018 NA   NA
 925503 925504 M28_Spy1275 M28_Spy1276     FALSE 0.146 94.000 0.000 NA   NA
 925504 925505 M28_Spy1276 M28_Spy1277     TRUE 0.604 29.000 0.000 NA   NA
 925505 925506 M28_Spy1277 M28_Spy1278     FALSE 0.103 159.000 0.000 NA   NA
 925506 925507 M28_Spy1278 M28_Spy1279     FALSE 0.083 186.000 0.000 NA   NA
 925507 925508 M28_Spy1279 M28_Spy1280     TRUE 0.553 33.000 0.000 NA   NA
 925508 925509 M28_Spy1280 M28_Spy1281     TRUE 0.948 11.000 0.000 0.061   NA
 925510 925511 M28_Spy1282 M28_Spy1283     TRUE 0.993 14.000 1.000 NA   NA
 925511 925512 M28_Spy1283 M28_Spy1284     TRUE 0.821 11.000 0.000 NA   NA
 925512 925513 M28_Spy1284 M28_Spy1285     FALSE 0.124 116.000 0.000 NA   NA
 925514 925515 M28_Spy1286 M28_Spy1287 msrA tlpA TRUE 0.985 43.000 0.875 1.000 Y NA
 925515 925516 M28_Spy1287 M28_Spy1288 tlpA ccdA TRUE 0.993 13.000 0.500 1.000 Y NA
 925516 925517 M28_Spy1288 M28_Spy1289 ccdA   FALSE 0.016 406.000 0.000 1.000 N NA
 925517 925518 M28_Spy1289 M28_Spy1290     TRUE 0.997 11.000 0.882 1.000 Y NA
 925518 925519 M28_Spy1290 M28_Spy1291     TRUE 0.997 -3.000 0.773 NA Y NA
 925519 925520 M28_Spy1291 M28_Spy1292     TRUE 0.997 2.000 0.711 NA Y NA
 925520 925521 M28_Spy1292 M28_Spy1293     TRUE 0.993 -10.000 0.948 NA   NA
 925521 925522 M28_Spy1293 M28_Spy1294     TRUE 0.994 0.000 0.891 NA   NA
 925522 925523 M28_Spy1294 M28_Spy1295     TRUE 0.723 133.000 0.664 NA   NA
 925523 925524 M28_Spy1295 M28_Spy1296   valS FALSE 0.114 154.000 0.000 1.000   NA
 925524 925525 M28_Spy1296 M28_Spy1297 valS   TRUE 0.915 2.000 0.008 NA   NA
 925525 925526 M28_Spy1297 M28_Spy1298     TRUE 0.878 -24.000 0.033 NA   NA
 925526 925527 M28_Spy1298 M28_Spy1299     FALSE 0.020 426.000 0.000 NA   NA
 925527 925528 M28_Spy1299 M28_Spy1300     TRUE 0.709 21.000 0.000 NA   NA
 925528 925529 M28_Spy1300 M28_Spy1301     TRUE 0.781 -15.000 0.000 NA   NA
 925529 925530 M28_Spy1301 M28_Spy1302     TRUE 0.774 -16.000 0.000 NA   NA
 925532 925533 M28_Spy1303 M28_Spy1304     TRUE 0.658 50.000 0.133 NA   NA
 925533 925534 M28_Spy1304 M28_Spy1305     FALSE 0.270 167.000 0.133 NA   NA
 925534 925535 M28_Spy1305 M28_Spy1306     FALSE 0.060 223.000 0.000 NA   NA
 925535 925536 M28_Spy1306 M28_Spy1307     TRUE 0.959 25.000 0.500 NA   NA
 925536 925537 M28_Spy1307 M28_Spy1308     TRUE 0.977 0.000 0.333 NA   NA
 925539 925540 M28_Spy1310 M28_Spy1311     TRUE 0.968 15.000 0.364 NA   NA
 925540 925541 M28_Spy1311 M28_Spy1312     TRUE 0.913 21.000 0.182 NA   NA
 925541 925542 M28_Spy1312 M28_Spy1313     TRUE 0.992 3.000 0.750 NA   NA
 925542 925543 M28_Spy1313 M28_Spy1314     TRUE 0.985 19.000 0.750 NA   NA
 925543 925544 M28_Spy1314 M28_Spy1315     TRUE 0.986 1.000 0.500 NA   NA
 925544 925545 M28_Spy1315 M28_Spy1316     TRUE 0.984 8.000 0.500 NA   NA
 925545 925546 M28_Spy1316 M28_Spy1317     TRUE 0.592 30.000 0.000 NA   NA
 925546 925547 M28_Spy1317 M28_Spy1318     TRUE 0.877 44.000 0.400 NA   NA
 925547 925548 M28_Spy1318 M28_Spy1319     FALSE 0.077 195.000 0.000 NA   NA
 925548 925549 M28_Spy1319 M28_Spy1320     FALSE 0.350 51.000 0.000 NA   NA
 925549 925550 M28_Spy1320 M28_Spy1321     TRUE 0.977 1.000 0.333 NA   NA
 925550 925551 M28_Spy1321 M28_Spy1322     FALSE 0.032 312.000 0.000 1.000   NA
 925551 925552 M28_Spy1322 M28_Spy1323     TRUE 0.727 20.000 0.000 NA   NA
 925552 925553 M28_Spy1323 M28_Spy1324     TRUE 0.995 3.000 1.000 NA   NA
 925553 925554 M28_Spy1324 M28_Spy1325     FALSE 0.200 262.000 0.222 NA   NA
 925554 925555 M28_Spy1325 M28_Spy1326     FALSE 0.381 170.000 0.000 0.012   NA
 925555 925556 M28_Spy1326 M28_Spy1327     FALSE 0.147 93.000 0.000 NA   NA
 925556 925557 M28_Spy1327 M28_Spy1328     FALSE 0.282 124.000 0.065 NA   NA
 925557 925558 M28_Spy1328 M28_Spy1329     FALSE 0.109 158.000 0.000 1.000   NA
 925559 925560 M28_Spy1330 M28_Spy1331     TRUE 0.985 7.000 0.500 NA   NA
 925561 925562 M28_Spy1332 M28_Spy1333     TRUE 0.928 3.000 0.031 NA   NA
 925562 925563 M28_Spy1333 M28_Spy1334     TRUE 0.926 -3.000 0.031 NA   NA
 925566 925567 M28_Spy1337 M28_Spy1338     FALSE 0.013 518.000 0.000 1.000 N NA
 925567 925568 M28_Spy1338 M28_Spy1339   aroB TRUE 0.961 41.000 0.003 0.003 Y NA
 925569 925570 M28_Spy1340 M28_Spy1341     TRUE 0.833 8.000 0.000 NA   NA
 925570 925571 M28_Spy1341 M28_Spy1342     TRUE 0.848 2.000 0.000 NA   NA
 925571 925572 M28_Spy1342 M28_Spy1343     TRUE 0.536 53.000 0.026 NA   NA
 925572 925573 M28_Spy1343 M28_Spy1344   aroE FALSE 0.038 252.000 0.000 1.000 N NA
 925573 925574 M28_Spy1344 M28_Spy1345 aroE lacZ FALSE 0.242 138.000 0.061 1.000 N NA
 925574 925575 M28_Spy1345 M28_Spy1346 lacZ   TRUE 0.872 -70.000 0.167 1.000 N NA
 925575 925576 M28_Spy1346 M28_Spy1347     TRUE 0.996 0.000 0.167 0.011 Y NA
 925576 925577 M28_Spy1347 M28_Spy1348     TRUE 0.986 -13.000 0.667 NA   NA
 925577 925578 M28_Spy1348 M28_Spy1349     FALSE 0.032 306.000 0.000 NA   NA
 925578 925579 M28_Spy1349 M28_Spy1350     TRUE 0.922 81.000 0.333 0.033 Y NA
 925579 925580 M28_Spy1350 M28_Spy1351     TRUE 0.999 10.000 0.917 0.033 Y NA
 925581 925582 M28_Spy1352 M28_Spy1353     FALSE 0.118 143.000 0.000 NA   NA
 925583 925584 M28_Spy1354 M28_Spy1355   hyl TRUE 0.891 25.000 0.182 1.000   NA
 925584 925585 M28_Spy1355 M28_Spy1356 hyl   TRUE 0.781 51.000 0.286 1.000   NA
 925586 925587 M28_Spy1357 M28_Spy1358     TRUE 0.945 15.000 0.194 1.000   NA
 925588 925589 M28_Spy1359 M28_Spy1360 rocA   FALSE 0.011 665.000 0.000 NA N NA
 925590 925591 M28_Spy1361 M28_Spy1362 recX   FALSE 0.328 80.000 0.025 NA   NA
 925594 925595 M28_SpyT0050 M28_SpyT0051     TRUE 0.679 23.000 0.000 NA   NA
 925595 925596 M28_SpyT0051 M28_SpyT0052     TRUE 0.523 36.000 0.000 NA   NA
 925596 925597 M28_SpyT0052 M28_SpyT0053     TRUE 0.821 11.000 0.000 NA   NA
 925597 925598 M28_SpyT0053 M28_SpyT0054     TRUE 0.837 6.000 0.000 NA   NA
 925598 925599 M28_SpyT0054 M28_SpyT0055     TRUE 0.567 32.000 0.000 NA   NA
 925599 925600 M28_SpyT0055 M28_SpyT0056     TRUE 0.755 18.000 0.000 NA   NA
 925600 925601 M28_SpyT0056 M28_SpyR0013     TRUE 0.679 23.000 0.000 NA   NA
 925601 925602 M28_SpyR0013 M28_SpyR0014     FALSE 0.149 92.000 0.000 NA   NA
 925602 925603 M28_SpyR0014 M28_SpyT0057     FALSE 0.033 300.000 0.000 NA   NA
 925603 925604 M28_SpyT0057 M28_SpyR0015     FALSE 0.333 53.000 0.000 NA   NA
 925606 925607 M28_Spy1366 M28_Spy1367   comFC FALSE 0.381 80.000 0.080 NA   NA
 925607 925608 M28_Spy1367 M28_Spy1368 comFC comFA TRUE 0.897 -28.000 0.130 NA   NA
 925609 925610 M28_Spy1369 M28_Spy1370   cysM FALSE 0.261 128.000 0.033 1.000   NA
 925611 925612 M28_Spy1371 M28_Spy1372     TRUE 0.955 0.000 0.151 1.000   NA
 925612 925613 M28_Spy1372 M28_Spy1373   yvqC TRUE 0.881 25.000 0.164 1.000   NA
 925613 925614 M28_Spy1373 M28_Spy1374 yvqC yvqE TRUE 0.999 -13.000 0.853 0.011 Y NA
 925614 925615 M28_Spy1374 M28_Spy1375 yvqE yvqF TRUE 0.990 -3.000 0.679 NA   NA
 925615 925616 M28_Spy1375 M28_Spy1376 yvqF   FALSE 0.392 72.000 0.039 NA   NA
 925616 925617 M28_Spy1376 M28_Spy1377   pppL TRUE 0.997 -3.000 0.704 1.000 Y NA
 925617 925618 M28_Spy1377 M28_Spy1378 pppL sunL TRUE 0.713 38.000 0.074 1.000 N NA
 925618 925619 M28_Spy1378 M28_Spy1379 sunL   TRUE 0.979 -46.000 0.305 1.000 Y NA
 925619 925620 M28_Spy1379 M28_Spy1380   priA TRUE 0.446 62.000 0.052 1.000 N NA
 925620 925621 M28_Spy1380 M28_Spy1381 priA   TRUE 0.859 38.000 0.032 0.059 N NA
 925621 925622 M28_Spy1381 M28_Spy1382   gmk TRUE 0.971 16.000 0.471 1.000 N NA
 925622 925623 M28_Spy1382 M28_Spy1383 gmk   FALSE 0.231 110.000 0.010 1.000   NA
 925623 925624 M28_Spy1383 M28_Spy1384     FALSE 0.213 130.000 0.006 1.000   NA
 925625 925626 M28_Spy1385 M28_Spy1386 atoB atoD.1 TRUE 0.982 12.000 0.150 1.000 Y NA
 925626 925627 M28_Spy1386 M28_Spy1387 atoD.1 atoA TRUE 0.997 2.000 0.200 0.002 Y NA
 925627 925628 M28_Spy1387 M28_Spy1388 atoA   TRUE 0.972 33.000 0.111 0.038 Y NA
 925628 925629 M28_Spy1388 M28_Spy1389     TRUE 0.649 71.000 0.333 1.000 N NA
 925629 925630 M28_Spy1389 M28_Spy1390   luxS TRUE 0.838 -16.000 0.006 1.000 N NA
 925631 925632 M28_Spy1391 M28_Spy1392     TRUE 0.899 14.000 0.029 NA   NA
 925632 925633 M28_Spy1392 M28_Spy1393     FALSE 0.019 445.000 0.000 NA   NA
 925633 925634 M28_Spy1393 M28_Spy1394     TRUE 0.691 122.000 0.579 NA   NA
 925635 925636 M28_Spy1395 M28_Spy1396 recU pbp1A TRUE 0.965 -13.000 0.319 1.000   NA
 925637 925638 M28_Spy1397 M28_Spy1398 pepC   FALSE 0.144 185.000 0.017 1.000 N NA
 925638 925639 M28_Spy1398 M28_Spy1399   nadE TRUE 0.992 -40.000 0.194 0.003 Y NA
 925639 925640 M28_Spy1399 M28_Spy1400 nadE   FALSE 0.173 171.000 0.032 1.000 N NA
 925640 925641 M28_Spy1400 M28_Spy1401     FALSE 0.192 157.000 0.033 1.000 N NA
 925641 925642 M28_Spy1401 M28_Spy1402   aapA TRUE 0.531 64.000 0.117 NA   NA
 925642 925643 M28_Spy1402 M28_Spy1403 aapA   TRUE 0.567 104.000 0.364 NA   NA
 925643 925644 M28_Spy1403 M28_Spy1404     TRUE 0.991 -3.000 0.310 1.000 Y NA
 925644 925645 M28_Spy1404 M28_Spy1406     FALSE 0.223 105.000 0.018 1.000 N NA
 925647 925648 M28_Spy1407 M28_Spy1408     TRUE 0.981 2.000 0.038 1.000 Y NA
 925648 925649 M28_Spy1408 M28_Spy1409   ftsL TRUE 0.981 4.000 0.456 1.000 N NA
 925649 925650 M28_Spy1409 M28_Spy1410 ftsL mraW TRUE 0.873 -25.000 0.077 1.000 N NA
 925650 925651 M28_Spy1410 M28_Spy1411 mraW   TRUE 0.674 24.000 0.000 1.000   NA
 925651 925652 M28_Spy1411 M28_Spy1412     TRUE 0.447 43.000 0.000 NA   NA
 925652 925653 M28_Spy1412 M28_Spy1413   proA TRUE 0.739 -25.000 0.000 NA   NA
 925653 925654 M28_Spy1413 M28_Spy1414 proA   TRUE 0.997 -7.000 0.281 0.002 Y NA
 925654 925655 M28_Spy1414 M28_Spy1415   proB TRUE 0.437 58.000 0.006 NA   NA
 925655 925656 M28_Spy1415 M28_Spy1416 proB   TRUE 0.950 -37.000 0.341 NA   NA
 925656 925657 M28_Spy1416 M28_Spy1417     TRUE 0.803 34.000 0.136 NA   NA
 925657 925658 M28_Spy1417 M28_Spy1418   tkt FALSE 0.370 193.000 0.300 NA   NA
 925658 925659 M28_Spy1418 M28_Spy1419 tkt   FALSE 0.263 218.000 0.000 1.000 Y NA
 925659 925660 M28_Spy1419 M28_Spy1420     FALSE 0.125 126.000 0.000 NA   NA
 925660 925661 M28_Spy1420 M28_Spy1421     TRUE 0.955 -70.000 0.462 NA   NA
 925661 925662 M28_Spy1421 M28_Spy1422   glpF TRUE 0.967 16.000 0.364 1.000   NA
 925662 925663 M28_Spy1422 M28_Spy1423 glpF glpO TRUE 0.984 2.000 0.500 1.000 N NA
 925663 925664 M28_Spy1423 M28_Spy1424 glpO glpK TRUE 0.998 16.000 0.500 0.001 Y NA
 925664 925665 M28_Spy1424 M28_Spy1425 glpK   FALSE 0.028 360.000 0.000 1.000   NA
 925665 925666 M28_Spy1425 M28_Spy1426     TRUE 0.428 67.000 0.029 NA   NA
 925666 925667 M28_Spy1426 M28_Spy1427   glyS FALSE 0.218 154.000 0.020 NA   NA
 925667 925668 M28_Spy1427 M28_Spy1428 glyS glyQ TRUE 0.818 378.000 0.651 0.001 Y NA
 925668 925669 M28_Spy1428 M28_Spy1429 glyQ   FALSE 0.025 372.000 0.000 1.000   NA
 925669 925670 M28_Spy1429 M28_Spy1430     FALSE 0.297 132.000 0.074 1.000   NA
 925670 925671 M28_Spy1430 M28_Spy1431   nagA FALSE 0.266 119.000 0.045 1.000   NA
 925671 925672 M28_Spy1431 M28_Spy1432 nagA   FALSE 0.263 117.000 0.090 1.000 N NA
 925676 925677 M28_Spy1436 M28_Spy1437     TRUE 0.839 -55.000 0.047 NA   NA
 925677 925678 M28_Spy1437 M28_Spy1438   lacD.1 FALSE 0.155 197.000 0.019 NA   NA
 925678 925679 M28_Spy1438 M28_Spy1439 lacD.1   TRUE 0.600 82.000 0.000 0.002   NA
 925679 925680 M28_Spy1439 M28_Spy1440   lacB.1 FALSE 0.104 165.000 0.000 1.000   NA
 925680 925681 M28_Spy1440 M28_Spy1441 lacB.1 lacA.1 TRUE 0.998 12.000 0.500 0.002 Y NA
 925681 925682 M28_Spy1441 M28_Spy1442 lacA.1   FALSE 0.208 257.000 0.000 1.000 Y NA
 925682 925683 M28_Spy1442 M28_Spy1443     TRUE 0.967 26.000 0.000 0.017 Y NA
 925683 925684 M28_Spy1443 M28_Spy1444     TRUE 0.997 -7.000 0.429 0.012 Y NA
 925686 925687 M28_Spy1446 M28_Spy1447   copZ TRUE 0.975 7.000 0.333 NA   NA
 925687 925688 M28_Spy1447 M28_Spy1448 copZ copA TRUE 0.993 14.000 0.048 0.002 Y NA
 925688 925689 M28_Spy1448 M28_Spy1449 copA copY TRUE 0.929 0.000 0.064 1.000 N NA
 925691 925692 M28_Spy1451 M28_Spy1452 rbfA infB TRUE 0.754 200.000 0.530 1.000 Y NA
 925692 925693 M28_Spy1452 M28_Spy1453 infB   TRUE 0.978 20.000 0.223 NA Y NA
 925693 925694 M28_Spy1453 M28_Spy1454     TRUE 0.974 -7.000 0.408 NA N NA
 925694 925695 M28_Spy1454 M28_Spy1455   nusA TRUE 0.989 13.000 0.323 NA Y NA
 925695 925696 M28_Spy1455 M28_Spy1456 nusA   TRUE 0.702 175.000 0.759 NA   NA
 925696 925697 M28_Spy1456 M28_SpyT0058     FALSE 0.131 108.000 0.000 NA   NA
 925697 925698 M28_SpyT0058 M28_Spy1457     FALSE 0.253 65.000 0.000 NA   NA
 925698 925699 M28_Spy1457 M28_Spy1458     TRUE 0.955 0.000 0.154 NA   NA
 925699 925700 M28_Spy1458 M28_Spy1459     TRUE 0.476 64.000 0.107 NA N NA
 925700 925701 M28_Spy1459 M28_Spy1460     TRUE 0.949 3.000 0.167 NA N NA
 925702 925703 M28_Spy1461 M28_Spy1462 hit   TRUE 0.935 -3.000 0.063 NA   NA
 925704 925705 M28_Spy1463 M28_Spy1464 lytR   TRUE 0.964 9.000 0.283 NA N NA
 925705 925706 M28_Spy1464 M28_Spy1465     TRUE 0.872 -25.000 0.033 NA   NA
 925706 925707 M28_Spy1465 M28_Spy1466     FALSE 0.191 154.000 0.008 NA   NA
 925708 925709 M28_Spy1467 M28_Spy1468   manL FALSE 0.029 352.000 0.000 1.000   NA
 925709 925710 M28_Spy1468 M28_Spy1469 manL manM TRUE 0.978 89.000 0.943 0.017 Y NA
 925710 925711 M28_Spy1469 M28_Spy1470 manM manN TRUE 0.998 17.000 0.812 0.017 Y NA
 925711 925712 M28_Spy1470 M28_Spy1471 manN manO TRUE 0.697 114.000 0.583 NA   NA
 925712 925713 M28_Spy1471 M28_Spy1472 manO serS FALSE 0.037 392.000 0.003 NA   NA
 925714 925715 M28_Spy1473 M28_Spy1474 accD accA TRUE 0.997 -3.000 0.234 0.002 Y NA
 925715 925716 M28_Spy1474 M28_Spy1475 accA accC TRUE 0.995 9.000 0.090 0.002 Y NA
 925716 925717 M28_Spy1475 M28_Spy1476 accC fabZ TRUE 0.924 32.000 0.045 1.000 Y NA
 925717 925718 M28_Spy1476 M28_Spy1477 fabZ accB TRUE 0.994 -3.000 0.047 0.006 Y NA
 925718 925719 M28_Spy1477 M28_Spy1478 accB fabF TRUE 0.983 2.000 0.074 1.000 Y NA
 925719 925720 M28_Spy1478 M28_Spy1479 fabF   TRUE 0.972 15.000 0.056 1.000 Y NA
 925720 925721 M28_Spy1479 M28_Spy1480   fabD TRUE 0.997 -10.000 0.432 0.006 Y NA
 925721 925722 M28_Spy1480 M28_Spy1481 fabD fabK TRUE 0.901 19.000 0.099 1.000   NA
 925722 925723 M28_Spy1481 M28_Spy1482 fabK acpP.2 FALSE 0.289 202.000 0.216 1.000   NA
 925723 925724 M28_Spy1482 M28_Spy1483 acpP.2 fabH TRUE 0.825 61.000 0.065 0.006   NA
 925724 925725 M28_Spy1483 M28_Spy1484 fabH   TRUE 0.930 1.000 0.070 1.000 N NA
 925725 925726 M28_Spy1484 M28_Spy1485   phaB TRUE 0.513 59.000 0.098 1.000 N NA
 925726 925727 M28_Spy1485 M28_Spy1486 phaB dnaJ FALSE 0.047 220.000 0.000 1.000 N NA
 925727 925728 M28_Spy1486 M28_Spy1487 dnaJ dnaK TRUE 0.765 227.000 0.196 0.003 Y NA
 925728 925729 M28_Spy1487 M28_Spy1488 dnaK grpE TRUE 0.745 181.000 0.026 0.006 Y NA
 925729 925730 M28_Spy1488 M28_Spy1489 grpE hrcA TRUE 0.921 3.000 0.051 1.000 N NA
 925730 925731 M28_Spy1489 M28_Spy1490 hrcA   FALSE 0.184 135.000 0.009 1.000 N NA
 925731 925732 M28_Spy1490 M28_Spy1491     TRUE 0.949 -3.000 0.174 1.000 N NA
 925732 925733 M28_Spy1491 M28_Spy1492     TRUE 0.935 -10.000 0.174 1.000 N NA
 925733 925734 M28_Spy1492 M28_Spy1493     FALSE 0.023 392.000 0.000 1.000   NA
 925734 925735 M28_Spy1493 M28_Spy1494     FALSE 0.067 210.000 0.000 NA   NA
 925735 925736 M28_Spy1494 M28_Spy1495   gatB TRUE 0.840 -3.000 0.000 NA   NA
 925736 925737 M28_Spy1495 M28_Spy1496 gatB gatA TRUE 0.999 0.000 0.492 0.002 Y NA
 925737 925738 M28_Spy1496 M28_Spy1497 gatA gatC TRUE 0.999 0.000 0.643 0.002 Y NA
 925738 925739 M28_Spy1497 M28_Spy1498 gatC   FALSE 0.095 232.000 0.002 1.000   NA
 925739 925740 M28_Spy1498 M28_Spy1499     TRUE 0.956 -28.000 0.000 0.001   NA
 925740 925741 M28_Spy1499 M28_Spy1500     FALSE 0.020 444.000 0.000 1.000   NA
 925741 925742 M28_Spy1500 M28_Spy1501   codY FALSE 0.250 144.000 0.083 1.000 N NA
 925742 925743 M28_Spy1501 M28_Spy1502 codY   FALSE 0.178 155.000 0.015 1.000 N NA
 925747 925748 M28_Spy1506 M28_Spy1507     TRUE 0.801 13.000 0.000 NA   NA
 925748 925749 M28_Spy1507 M28_Spy1508     TRUE 0.604 29.000 0.000 NA   NA
 925749 925750 M28_Spy1508 M28_Spy1509   recG FALSE 0.026 293.000 0.000 1.000 N NA
 925752 925753 M28_Spy1511 M28_Spy1512     TRUE 0.953 -63.000 0.429 1.000   NA
 925753 925754 M28_Spy1512 M28_Spy1513     TRUE 0.987 -3.000 0.562 NA   NA
 925754 925755 M28_Spy1513 M28_Spy1514     TRUE 0.939 -3.000 0.081 NA   NA
 925755 925756 M28_Spy1514 M28_Spy1515     TRUE 0.991 -40.000 0.576 0.006 N NA
 925756 925757 M28_Spy1515 M28_Spy1516   fhuC TRUE 0.917 -3.000 0.047 1.000 N NA
 925757 925758 M28_Spy1516 M28_Spy1517 fhuC   TRUE 0.996 -3.000 0.657 1.000 Y NA
 925758 925759 M28_Spy1517 M28_Spy1518     TRUE 0.996 -25.000 0.877 1.000 Y NA
 925759 925760 M28_Spy1518 M28_Spy1519   shp TRUE 0.902 -49.000 0.182 NA   NA
 925760 925761 M28_Spy1519 M28_Spy1520 shp   FALSE 0.333 197.000 0.273 NA   NA
 925761 925762 M28_Spy1520 M28_Spy1521   isp2 FALSE 0.018 484.000 0.000 NA   NA
 925762 925763 M28_Spy1521 M28_Spy1522 isp2 acpS FALSE 0.295 87.000 0.022 NA   NA
 925763 925764 M28_Spy1522 M28_Spy1523 acpS alr TRUE 0.931 -3.000 0.093 1.000 N NA
 925764 925765 M28_Spy1523 M28_Spy1524 alr secA FALSE 0.183 116.000 0.008 1.000 N NA
 925765 925766 M28_Spy1524 M28_Spy1525 secA pmi FALSE 0.227 134.000 0.042 1.000 N NA
 925766 925767 M28_Spy1525 M28_Spy1526 pmi scrK TRUE 0.795 95.000 0.333 1.000 Y NA
 925767 925768 M28_Spy1526 M28_Spy1527 scrK endoS FALSE 0.083 192.000 0.000 1.000   NA
 925768 925769 M28_Spy1527 M28_Spy1528 endoS   TRUE 0.716 -30.000 0.000 NA   NA
 925769 925770 M28_Spy1528 M28_Spy1529   scrA TRUE 0.447 43.000 0.000 NA   NA
 925771 925772 M28_Spy1530 M28_Spy1531 scrB scrR TRUE 0.986 5.000 0.571 1.000 N NA
 925773 925774 M28_Spy1532 M28_Spy1533 nusB   TRUE 0.945 -25.000 0.265 NA   NA
 925774 925775 M28_Spy1533 M28_Spy1534   efp TRUE 0.628 46.000 0.031 NA   NA
 925775 925776 M28_Spy1534 M28_Spy1535 efp comEB FALSE 0.208 88.000 0.005 1.000 N NA
 925776 925777 M28_Spy1535 M28_Spy1536 comEB   TRUE 0.688 34.000 0.018 1.000 N NA
 925777 925778 M28_Spy1536 M28_Spy1537   uvrA FALSE 0.266 77.000 0.008 1.000 N NA
 925779 925780 M28_Spy1538 M28_Spy1539 corA   FALSE 0.289 133.000 0.072 NA   NA
 925781 925782 M28_Spy1540 M28_Spy1541 rpsR ssb2.2 FALSE 0.158 165.000 0.012 1.000 N NA
 925782 925783 M28_Spy1541 M28_Spy1542 ssb2.2 rpsF TRUE 0.790 22.000 0.012 1.000 N NA
 925783 925784 M28_Spy1542 M28_Spy1543 rpsF   FALSE 0.094 173.000 0.000 NA   NA
 925785 925786 M28_Spy1544 M28_Spy1545 mutY   FALSE 0.300 67.000 0.002 1.000 N NA
 925786 925787 M28_Spy1545 M28_Spy1546     TRUE 0.787 -13.000 0.000 NA   NA
 925788 925789 M28_Spy1547 M28_Spy1548 trx.2   TRUE 0.723 39.000 0.053 1.000   NA
 925789 925790 M28_Spy1548 M28_Spy1549   mutS2 TRUE 0.913 1.000 0.005 1.000   NA
 925790 925791 M28_Spy1549 M28_Spy1550 mutS2   TRUE 0.792 32.000 0.070 1.000   NA
 925791 925792 M28_Spy1550 M28_Spy1551     TRUE 0.925 3.000 0.019 NA   NA
 925793 925794 M28_Spy1552 M28_Spy1553   spi TRUE 0.836 -55.000 0.080 1.000 N NA
 925794 925795 M28_Spy1553 M28_Spy1554 spi recD TRUE 0.524 58.000 0.099 1.000 N NA
 925795 925796 M28_Spy1554 M28_Spy1555 recD   FALSE 0.310 91.000 0.050 NA   NA
 925799 925800 M28_Spy1558 M28_Spy1559     TRUE 0.963 -15.000 0.326 NA   NA
 925802 925803 M28_Spy1561 M28_Spy1562 glpF.2   FALSE 0.214 71.000 0.000 NA   NA
 925803 925804 M28_Spy1562 M28_Spy1563   norA FALSE 0.083 186.000 0.000 NA   NA
 925805 925806 M28_Spy1564 M28_Spy1565 srv pepXP TRUE 0.871 22.000 0.081 1.000   NA
 925808 925809 M28_Spy1567 M28_Spy1568     FALSE 0.126 193.000 0.002 NA   NA
 925810 925811 M28_Spy1569 M28_Spy1570   dnaQ FALSE 0.303 147.000 0.156 1.000 N NA
 925811 925812 M28_Spy1570 M28_Spy1571 dnaQ   TRUE 0.927 10.000 0.057 NA   NA
 925812 925813 M28_Spy1571 M28_Spy1572     FALSE 0.111 153.000 0.000 NA   NA
 925813 925814 M28_Spy1572 M28_Spy1573     TRUE 0.840 -3.000 0.000 NA   NA
 925814 925815 M28_Spy1573 M28_Spy1574     TRUE 0.776 47.000 0.000 0.021   NA
 925815 925816 M28_Spy1574 M28_Spy1575     TRUE 0.840 -3.000 0.000 NA   NA
 925816 925817 M28_Spy1575 M28_Spy1576     TRUE 0.724 102.000 0.600 NA   NA
 925819 925820 M28_Spy1578 M28_Spy1579 deoC nupC TRUE 0.971 30.000 0.333 1.000 Y NA
 925820 925821 M28_Spy1579 M28_Spy1580 nupC udp TRUE 0.976 9.000 0.015 1.000 Y NA
 925822 925823 M28_Spy1581 M28_Spy1582 crgR rpsN2 FALSE 0.046 221.000 0.000 1.000 N NA
 925824 925825 M28_Spy1583 M28_Spy1584     TRUE 0.808 -10.000 0.000 1.000   NA
 925825 925826 M28_Spy1584 M28_Spy1585     TRUE 0.732 -28.000 0.000 1.000   NA
 925827 925828 M28_Spy1586 M28_Spy1587     TRUE 0.989 2.000 0.576 NA   NA
 925829 925830 M28_Spy1588 M28_Spy1589 glnA   TRUE 0.789 38.000 0.179 1.000 N NA
 925830 925831 M28_Spy1589 M28_Spy1590     TRUE 0.545 67.000 0.154 NA   NA
 925831 925832 M28_Spy1590 M28_Spy1591   pgk FALSE 0.072 263.000 0.002 NA   NA
 925832 925833 M28_Spy1591 M28_Spy1592 pgk lppC FALSE 0.131 193.000 0.003 1.000   NA
 925833 925834 M28_Spy1592 M28_Spy1593 lppC   FALSE 0.044 274.000 0.000 1.000   NA
 925834 925835 M28_Spy1593 M28_Spy1594     FALSE 0.102 237.000 0.006 1.000   NA
 925835 925836 M28_Spy1594 M28_Spy1595   asp TRUE 0.988 0.000 0.567 NA   NA
 925836 925837 M28_Spy1595 M28_Spy1596 asp rpmB FALSE 0.240 152.000 0.044 NA   NA
 925837 925838 M28_Spy1596 M28_Spy1597 rpmB fba FALSE 0.017 382.000 0.000 1.000 N NA
 925838 925839 M28_Spy1597 M28_SpyT0059 fba   FALSE 0.069 207.000 0.000 NA   NA
 925839 925840 M28_SpyT0059 M28_Spy1598     FALSE 0.322 54.000 0.000 NA   NA
 925840 925841 M28_Spy1598 M28_Spy1599   pyrG FALSE 0.155 168.000 0.002 1.000   NA
 925841 925842 M28_Spy1599 M28_Spy1600 pyrG rpoE FALSE 0.089 257.000 0.029 1.000 N NA
 925842 925843 M28_Spy1600 M28_Spy1601 rpoE ropA FALSE 0.094 212.000 0.005 1.000 N NA
 925845 925846 M28_Spy1603 M28_Spy1604     TRUE 0.932 14.000 0.149 NA   NA
 925846 925847 M28_Spy1604 M28_Spy1605   thiD TRUE 0.962 -10.000 0.276 NA   NA
 925847 925848 M28_Spy1605 M28_Spy1606 thiD   TRUE 0.900 -10.000 0.058 1.000 N NA
 925848 925849 M28_Spy1606 M28_Spy1607   comX.2 FALSE 0.088 185.000 0.000 1.000   NA
 925849 925850 M28_Spy1607 M28_SpyT0060 comX.2   TRUE 0.825 -4.000 0.000 NA   NA
 925850 925851 M28_SpyT0060 M28_SpyT0061     FALSE 0.174 80.000 0.000 NA   NA
 925851 925852 M28_SpyT0061 M28_SpyR0016     TRUE 0.821 11.000 0.000 NA   NA
 925852 925853 M28_SpyR0016 M28_SpyR0017     FALSE 0.149 92.000 0.000 NA   NA
 925853 925854 M28_SpyR0017 M28_SpyT0062     FALSE 0.034 298.000 0.000 NA   NA
 925854 925855 M28_SpyT0062 M28_SpyR0018     FALSE 0.333 53.000 0.000 NA   NA
 925858 925859 M28_Spy1610 M28_Spy1611 hsdR hsdS TRUE 0.994 13.000 0.087 0.001 Y NA
 925859 925860 M28_Spy1611 M28_Spy1612 hsdS hsdM TRUE 0.988 13.000 0.022 0.057 Y NA
 925863 925864 M28_Spy1615 M28_Spy1616 salR   TRUE 0.994 -19.000 0.704 NA Y NA
 925864 925865 M28_Spy1616 M28_Spy1617   salY TRUE 0.484 40.000 0.000 NA   NA
 925865 925866 M28_Spy1617 M28_Spy1618 salY   TRUE 0.853 2.000 0.000 1.000   NA
 925866 925867 M28_Spy1618 M28_Spy1619   salX TRUE 0.965 -3.000 0.000 0.021   NA
 925867 925868 M28_Spy1619 M28_Spy1620 salX salB FALSE 0.309 56.000 0.000 NA   NA
 925868 925869 M28_Spy1620 M28_Spy1621 salB salA FALSE 0.165 82.000 0.000 NA   NA
 925869 925870 M28_Spy1621 M28_Spy1622 salA lacG FALSE 0.018 503.000 0.000 1.000   NA
 925870 925871 M28_Spy1622 M28_Spy1623 lacG lacE TRUE 0.569 73.000 0.000 1.000 Y NA
 925871 925872 M28_Spy1623 M28_Spy1624 lacE lacF TRUE 0.995 0.000 0.150 0.012 Y NA
 925872 925873 M28_Spy1624 M28_Spy1625 lacF lacD.2 TRUE 0.990 24.000 0.667 1.000 Y NA
 925873 925874 M28_Spy1625 M28_Spy1626 lacD.2 lacC.2 TRUE 0.992 3.000 0.000 0.002 Y NA
 925874 925875 M28_Spy1626 M28_Spy1627 lacC.2 lacB.2 TRUE 0.790 46.000 0.000 1.000 Y NA
 925875 925876 M28_Spy1627 M28_Spy1628 lacB.2 lacA.2 TRUE 0.963 35.000 0.000 0.002 Y NA
 925877 925878 M28_Spy1629 M28_Spy1630 lacR.2   FALSE 0.015 700.000 0.000 NA   NA
 925878 925879 M28_Spy1630 M28_Spy1631     TRUE 0.801 -10.000 0.000 NA   NA
 925879 925880 M28_Spy1631 M28_Spy1632     FALSE 0.040 281.000 0.000 NA   NA
 925880 925881 M28_Spy1632 M28_Spy1633     FALSE 0.098 361.000 0.000 0.057   NA
 925882 925883 M28_Spy1634 M28_Spy1635 rpsI rplM TRUE 0.997 21.000 0.601 0.023 Y NA
 925883 925884 M28_Spy1635 M28_Spy1636 rplM   FALSE 0.047 218.000 0.000 1.000 N NA
 925884 925885 M28_Spy1636 M28_Spy1637     TRUE 0.926 -3.000 0.031 NA   NA
 925885 925886 M28_Spy1637 M28_Spy1638     FALSE 0.273 103.000 0.031 NA   NA
 925886 925887 M28_Spy1638 M28_Spy1639     FALSE 0.287 97.000 0.036 NA   NA
 925887 925888 M28_Spy1639 M28_Spy1640     TRUE 0.944 4.000 0.109 NA   NA
 925888 925889 M28_Spy1640 M28_Spy1641     TRUE 0.820 20.000 0.003 NA   NA
 925889 925890 M28_Spy1641 M28_Spy1642     FALSE 0.076 196.000 0.000 NA   NA
 925890 925891 M28_Spy1642 M28_Spy1643   cysS TRUE 0.938 -7.000 0.129 1.000   NA
 925891 925892 M28_Spy1643 M28_Spy1644 cysS   TRUE 0.726 28.000 0.002 NA   NA
 925892 925893 M28_Spy1644 M28_Spy1645     TRUE 0.801 13.000 0.000 NA   NA
 925893 925894 M28_Spy1645 M28_Spy1646   cysE FALSE 0.078 194.000 0.000 NA   NA
 925894 925895 M28_Spy1646 M28_Spy1647 cysE   TRUE 0.938 9.000 0.097 NA   NA
 925895 925896 M28_Spy1647 M28_Spy1648     TRUE 0.897 -7.000 0.009 NA   NA
 925896 925897 M28_Spy1648 M28_Spy1649     FALSE 0.030 280.000 0.000 1.000 N NA
 925897 925898 M28_Spy1649 M28_Spy1650     TRUE 0.928 10.000 0.056 1.000   NA
 925898 925899 M28_Spy1650 M28_Spy1651     TRUE 0.968 27.000 0.241 0.019   NA
 925899 925900 M28_Spy1651 M28_Spy1652     TRUE 0.958 -28.000 0.048 0.012 N NA
 925900 925901 M28_Spy1652 M28_Spy1653     FALSE 0.332 136.000 0.143 NA   NA
 925901 925902 M28_Spy1653 M28_Spy1654     TRUE 0.850 -16.000 0.002 NA   NA
 925902 925903 M28_Spy1654 M28_Spy1655     FALSE 0.105 158.000 0.000 NA   NA
 925904 925905 M28_Spy1656 M28_Spy1657   def FALSE 0.125 126.000 0.000 NA   NA
 925906 925907 M28_Spy1658 M28_Spy1659     TRUE 0.590 131.000 0.414 1.000   NA
 925907 925908 M28_Spy1659 M28_Spy1660   polC FALSE 0.284 80.000 0.020 1.000 N NA
 925908 925909 M28_Spy1660 M28_Spy1661 polC proS FALSE 0.274 254.000 0.070 0.043 N NA
 925909 925910 M28_Spy1661 M28_Spy1662 proS   FALSE 0.172 198.000 0.095 1.000 N NA
 925910 925911 M28_Spy1662 M28_Spy1663   cdsA FALSE 0.339 73.000 0.040 1.000 N NA
 925911 925912 M28_Spy1663 M28_Spy1664 cdsA uppS TRUE 0.978 13.000 0.113 1.000 Y NA
 925912 925913 M28_Spy1664 M28_Spy1665 uppS yajC FALSE 0.091 219.000 0.007 NA N NA
 925913 925914 M28_Spy1665 M28_Spy1666 yajC   FALSE 0.168 116.000 0.006 NA N NA
 925914 925915 M28_Spy1666 M28_Spy1668   pulA FALSE 0.090 115.000 0.000 NA N NA
 925917 925918 M28_Spy1669 M28_Spy1670 dexB msmK TRUE 0.671 108.000 0.171 1.000 Y NA
 925918 925919 M28_Spy1670 M28_Spy1671 msmK lrp FALSE 0.077 298.000 0.071 1.000 N NA
 925921 925922 M28_Spy1673 M28_Spy1674   relA TRUE 0.929 15.000 0.177 1.000 N NA
 925922 925923 M28_Spy1674 M28_Spy1675 relA sclA FALSE 0.058 240.000 0.000 1.000   NA
 925925 925926 M28_Spy1677 M28_Spy1678     TRUE 0.866 62.000 0.610 1.000   NA
 925926 925927 M28_Spy1678 M28_Spy1679     FALSE 0.027 357.000 0.000 NA   NA
 925927 925928 M28_Spy1679 M28_Spy1680     TRUE 0.968 0.000 0.227 NA   NA
 925928 925929 M28_Spy1680 M28_Spy1681     FALSE 0.374 70.000 0.013 NA   NA
 925930 925931 M28_Spy1682 M28_Spy1683   trpG TRUE 0.906 33.000 0.009 1.000 Y NA
 925931 925932 M28_Spy1683 M28_Spy1684 trpG   TRUE 0.715 33.000 0.035 1.000 N NA
 925932 925933 M28_Spy1684 M28_SpyT0063     FALSE 0.038 286.000 0.000 NA   NA
 925933 925934 M28_SpyT0063 M28_Spy1685     FALSE 0.139 99.000 0.000 NA   NA
 925934 925935 M28_Spy1685 M28_Spy1686   flaR TRUE 0.564 55.000 0.062 1.000   NA
 925935 925936 M28_Spy1686 M28_Spy1687 flaR smeZ FALSE 0.054 249.000 0.000 1.000   NA
 925938 925939 M28_Spy1689 M28_Spy1690 dppA dppB TRUE 0.689 113.000 0.000 0.031 Y NA
 925939 925940 M28_Spy1690 M28_Spy1691 dppB dppC TRUE 0.999 -3.000 1.000 0.031 Y NA
 925940 925941 M28_Spy1691 M28_Spy1692 dppC dppD TRUE 0.990 12.000 0.333 1.000 Y NA
 925941 925942 M28_Spy1692 M28_Spy1693 dppD dppE TRUE 0.998 -16.000 0.750 0.020 Y NA
 925943 925944 M28_Spy1694 M28_Spy1695     FALSE 0.097 169.000 0.000 NA   NA
 925944 925945 M28_Spy1695 M28_Spy1696   lmb TRUE 0.801 13.000 0.000 NA   NA
 925945 925946 M28_Spy1696 M28_Spy1697 lmb   FALSE 0.184 78.000 0.000 NA   NA
 925946 925947 M28_Spy1697 M28_Spy1698     TRUE 0.774 -16.000 0.000 NA   NA
 925947 925948 M28_Spy1698 M28_Spy1699     FALSE 0.043 277.000 0.000 1.000   NA
 925948 925949 M28_Spy1699 M28_Spy1700   scpA FALSE 0.394 97.000 0.000 0.062   NA
 925949 925950 M28_Spy1700 M28_Spy1701 scpA   FALSE 0.105 335.000 0.000 0.062   NA
 925950 925951 M28_Spy1701 M28_Spy1702     FALSE 0.191 286.000 0.000 0.011   NA
 925951 925952 M28_Spy1702 M28_Spy1703     FALSE 0.273 225.000 0.000 0.011   NA
 925952 925953 M28_Spy1703 M28_Spy1704   mga FALSE 0.080 190.000 0.000 NA   NA
 925955 925956 M28_Spy1706 M28_Spy1707   isp TRUE 0.888 78.000 1.000 NA   NA
 925956 925957 M28_Spy1707 M28_Spy1708 isp ihk TRUE 0.436 102.000 0.200 1.000   NA
 925957 925958 M28_Spy1708 M28_Spy1709 ihk irr TRUE 0.995 -3.000 0.500 1.000 Y NA
 925958 925959 M28_Spy1709 M28_Spy1710 irr   TRUE 0.474 94.000 0.267 1.000 N NA
 925959 925960 M28_Spy1710 M28_Spy1711     TRUE 0.992 13.000 0.467 1.000 Y NA
 925960 925961 M28_Spy1711 M28_Spy1712     TRUE 0.966 -13.000 0.385 NA N NA
 925961 925962 M28_Spy1712 M28_Spy1713     FALSE 0.132 434.000 0.333 NA   NA
 925962 925963 M28_Spy1713 M28_Spy1714     FALSE 0.116 149.000 0.000 NA   NA
 925963 925964 M28_Spy1714 M28_Spy1715   sfbX FALSE 0.120 142.000 0.000 NA   NA
 925964 925965 M28_Spy1715 M28_Spy1716 sfbX sof FALSE 0.366 180.000 0.000 0.011   NA
 925967 925968 M28_Spy1718 M28_Spy1719     TRUE 0.567 32.000 0.000 NA   NA
 925968 925969 M28_Spy1719 M28_Spy1720     FALSE 0.131 108.000 0.000 NA   NA
 925969 925970 M28_Spy1720 M28_Spy1721   speB TRUE 0.979 2.000 0.000 0.001   NA
 925970 925971 M28_Spy1721 M28_Spy1722 speB   FALSE 0.043 272.000 0.000 NA   NA
 925972 925973 M28_Spy1723 M28_Spy1724   rgg FALSE 0.039 284.000 0.000 NA   NA
 925975 925976 M28_Spy1726 M28_Spy1727     FALSE 0.112 152.000 0.000 NA   NA
 925977 925978 M28_Spy1728 M28_Spy1729 gldA mipB TRUE 0.653 57.000 0.211 1.000 N NA
 925978 925979 M28_Spy1729 M28_Spy1730 mipB pflD TRUE 0.968 13.000 0.368 1.000 N NA
 925979 925980 M28_Spy1730 M28_Spy1731 pflD   FALSE 0.170 211.000 0.132 1.000 N NA
 925980 925981 M28_Spy1731 M28_Spy1732     TRUE 0.999 10.000 0.889 0.012 Y NA
 925981 925982 M28_Spy1732 M28_Spy1733     TRUE 0.999 7.000 0.889 0.012 Y NA
 925982 925983 M28_Spy1733 M28_Spy1734     FALSE 0.089 288.000 0.091 1.000 N NA
 925983 925984 M28_Spy1734 M28_Spy1735     TRUE 0.980 16.000 0.188 1.000 Y NA
 925986 925987 M28_Spy1737 M28_Spy1738 secE   TRUE 0.904 14.000 0.080 1.000 N NA
 925987 925988 M28_Spy1738 M28_Spy1739   pbp2A TRUE 0.621 49.000 0.111 1.000 N NA
 925988 925989 M28_Spy1739 M28_Spy1740 pbp2A   TRUE 0.687 39.000 0.062 NA N NA
 925990 925991 M28_Spy1741 M28_Spy1742     TRUE 0.827 -106.000 0.056 NA   NA
 925994 925995 M28_Spy1745 M28_Spy1746     FALSE 0.200 73.000 0.000 NA   NA
 925995 925996 M28_Spy1746 M28_Spy1747   groEL FALSE 0.054 248.000 0.000 1.000   NA
 925996 925997 M28_Spy1747 M28_Spy1748 groEL groES TRUE 0.979 36.000 0.160 0.006 Y NA
 925997 925998 M28_Spy1748 M28_Spy1749 groES clpC TRUE 0.474 178.000 0.036 1.000 Y NA
 925998 925999 M28_Spy1749 M28_Spy1750 clpC ctsR TRUE 0.955 0.000 0.188 NA N NA
 925999 926000 M28_Spy1750 M28_Spy1751 ctsR csp FALSE 0.399 196.000 0.013 NA Y NA
 926000 926001 M28_Spy1751 M28_SpyT0064 csp   FALSE 0.017 513.000 0.000 NA   NA
 926002 926003 M28_Spy1752 M28_Spy1753 ahpC ahpF TRUE 0.990 21.000 0.551 1.000 Y NA
 926005 926006 M28_Spy1755 M28_Spy1756 hutU   TRUE 0.657 88.000 0.086 1.000 Y NA
 926006 926007 M28_Spy1756 M28_Spy1757     TRUE 0.982 11.000 0.143 1.000 Y NA
 926007 926008 M28_Spy1757 M28_Spy1758   fhs.2 TRUE 0.863 18.000 0.038 1.000 N NA
 926008 926009 M28_Spy1758 M28_Spy1759 fhs.2   TRUE 0.932 1.000 0.038 NA   NA
 926009 926010 M28_Spy1759 M28_Spy1760     FALSE 0.153 220.000 0.062 NA   NA
 926010 926011 M28_Spy1760 M28_Spy1761   hutH TRUE 0.972 11.000 0.006 1.000 Y NA
 926011 926012 M28_Spy1761 M28_Spy1762 hutH hutG TRUE 0.691 177.000 0.000 0.002 Y NA
 926014 926015 M28_Spy1764 M28_Spy1765 rpsB tsf TRUE 0.896 134.000 0.748 1.000 Y NA
 926016 926017 M28_Spy1766 M28_Spy1767 pepO dexS FALSE 0.051 208.000 0.000 1.000 N NA
 926017 926018 M28_Spy1767 M28_Spy1768 dexS   TRUE 0.938 68.000 0.650 1.000 Y NA
 926021 926022 M28_Spy1771 M28_Spy1772   yaaA TRUE 0.615 42.000 0.007 NA   NA
 926023 926024 M28_Spy1773 M28_Spy1774 nrdG   TRUE 0.954 -3.000 0.159 1.000   NA
 926024 926025 M28_Spy1774 M28_Spy1775     TRUE 0.926 9.000 0.041 1.000   NA
 926025 926026 M28_Spy1775 M28_Spy1776     TRUE 0.839 23.000 0.041 NA   NA
 926026 926027 M28_Spy1776 M28_Spy1777   nrdD FALSE 0.206 182.000 0.062 NA   NA
 926027 926028 M28_Spy1777 M28_Spy1778 nrdD   FALSE 0.304 97.000 0.057 NA   NA
 926028 926029 M28_Spy1778 M28_Spy1779     FALSE 0.021 414.000 0.000 NA   NA
 926029 926030 M28_Spy1779 M28_Spy1780     TRUE 0.987 12.000 0.651 NA   NA
 926030 926031 M28_Spy1780 M28_Spy1781     TRUE 0.986 -3.000 0.537 NA   NA
 926031 926032 M28_Spy1781 M28_Spy1782     FALSE 0.254 114.000 0.032 NA   NA
 926032 926033 M28_Spy1782 M28_Spy1783   recA FALSE 0.050 291.000 0.004 1.000 N NA
 926033 926034 M28_Spy1783 M28_Spy1784 recA cinA FALSE 0.353 89.000 0.083 1.000   NA
 926034 926035 M28_Spy1784 M28_Spy1785 cinA tag FALSE 0.377 69.000 0.011 1.000   NA
 926035 926036 M28_Spy1785 M28_Spy1786 tag ruvA TRUE 0.978 1.000 0.012 1.000 Y NA
 926036 926037 M28_Spy1786 M28_Spy1787 ruvA lmrP TRUE 0.912 2.000 0.005 1.000   NA
 926037 926038 M28_Spy1787 M28_Spy1788 lmrP mutL TRUE 0.897 11.000 0.006 1.000   NA
 926038 926039 M28_Spy1788 M28_Spy1789 mutL   TRUE 0.703 56.000 0.000 1.000 Y NA
 926042 926043 M28_Spy1792 M28_Spy1793     TRUE 0.951 34.000 0.000 0.021 Y NA
 926043 926044 M28_Spy1793 M28_Spy1794     TRUE 0.709 21.000 0.000 NA   NA
 926044 926045 M28_Spy1794 M28_Spy1795     TRUE 0.801 13.000 0.000 NA   NA
 926045 926046 M28_Spy1795 M28_Spy1796     FALSE 0.041 277.000 0.000 NA   NA
 926046 926047 M28_Spy1796 M28_Spy1797     FALSE 0.059 227.000 0.000 NA   NA
 926047 926048 M28_Spy1797 M28_Spy1798     FALSE 0.253 200.000 0.000 0.043   NA
 926048 926049 M28_Spy1798 M28_Spy1799     TRUE 0.974 24.000 0.667 NA   NA
 926049 926050 M28_Spy1799 M28_Spy1800     TRUE 0.751 102.000 0.667 NA   NA
 926050 926051 M28_Spy1800 M28_Spy1801     TRUE 0.840 -3.000 0.000 NA   NA
 926051 926052 M28_Spy1801 M28_Spy1802     TRUE 0.813 12.000 0.000 NA   NA
 926052 926053 M28_Spy1802 M28_Spy1803     TRUE 0.845 3.000 0.000 NA   NA
 926053 926054 M28_Spy1803 M28_Spy1804     TRUE 0.991 1.000 0.714 NA   NA
 926054 926055 M28_Spy1804 M28_Spy1805     TRUE 0.966 12.000 0.286 NA   NA
 926055 926056 M28_Spy1805 M28_Spy1806     FALSE 0.035 294.000 0.000 NA   NA
 926056 926057 M28_Spy1806 M28_Spy1807     TRUE 0.840 -3.000 0.000 NA   NA
 926057 926058 M28_Spy1807 M28_Spy1808     TRUE 0.837 6.000 0.000 NA   NA
 926058 926059 M28_Spy1808 M28_Spy1809     TRUE 0.848 2.000 0.000 NA   NA
 926059 926060 M28_Spy1809 M28_Spy1810     FALSE 0.194