MicrobesOnline Operon Predictions for Bacillus pumilus SAFR-032

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 3424856 3424857 BPUM_0001 BPUM_0002 dnaA dnaN TRUE 0.930 68.000 0.328 1.000 Y NA
 3424857 3424858 BPUM_0002 BPUM_0003 dnaN yaaA FALSE 0.344 127.000 0.103 1.000   NA
 3424858 3424859 BPUM_0003 BPUM_0004 yaaA recF TRUE 0.850 17.000 0.209 1.000   NA
 3424859 3424860 BPUM_0004 BPUM_0005 recF yaaB FALSE 0.413 9.000 0.003 NA   NA
 3424860 3424861 BPUM_0005 BPUM_0006 yaaB gyrB FALSE 0.228 46.000 0.003 NA   NA
 3424861 3424862 BPUM_0006 BPUM_0007 gyrB gyrA TRUE 0.628 233.000 0.306 0.002 Y NA
 3424862 3424863 BPUM_0007 BPUM_r0001 gyrA   FALSE 0.000 412.000 0.000 NA   NA
 3424863 3424864 BPUM_r0001 BPUM_r0002     FALSE 0.003 180.000 0.000 NA   NA
 3424864 3424865 BPUM_r0002 BPUM_r0003     FALSE 0.019 62.000 0.000 NA   NA
 3424865 3424866 BPUM_r0003 BPUM_0008   csfB FALSE 0.004 169.000 0.000 NA   NA
 3424866 3424867 BPUM_0008 BPUM_0009 csfB xpaC FALSE 0.220 130.000 0.057 NA   NA
 3424867 3424868 BPUM_0009 BPUM_0010 xpaC yaaN FALSE 0.214 212.000 0.373 NA   NA
 3424868 3424869 BPUM_0010 BPUM_0011 yaaN yaaO FALSE 0.435 78.000 0.032 NA N NA
 3424869 3424870 BPUM_0011 BPUM_0012 yaaO tmk TRUE 0.822 -3.000 0.045 1.000 N NA
 3424870 3424871 BPUM_0012 BPUM_0013 tmk yaaQ FALSE 0.264 80.000 0.038 NA   NA
 3424871 3424872 BPUM_0013 BPUM_0014 yaaQ yaaR TRUE 0.752 13.000 0.104 NA   NA
 3424872 3424873 BPUM_0014 BPUM_0015 yaaR holB TRUE 0.675 12.000 0.059 NA   NA
 3424873 3424874 BPUM_0015 BPUM_0016 holB yaaT TRUE 0.892 3.000 0.372 NA   NA
 3424874 3424875 BPUM_0016 BPUM_0017 yaaT yabA TRUE 0.820 15.000 0.183 NA   NA
 3424875 3424876 BPUM_0017 BPUM_0018 yabA yabB TRUE 0.642 56.000 0.193 NA   NA
 3424876 3424877 BPUM_0018 BPUM_0019 yabB yazA TRUE 0.887 -13.000 0.209 1.000   NA
 3424877 3424878 BPUM_0019 BPUM_0020 yazA yabC TRUE 0.746 -22.000 0.041 1.000   NA
 3424880 3424881 BPUM_0022 BPUM_0023 metG yabD TRUE 0.662 83.000 0.221 NA N NA
 3424881 3424882 BPUM_0023 BPUM_0024 yabD yabE FALSE 0.017 245.000 0.007 NA   NA
 3424882 3424883 BPUM_0024 BPUM_0025 yabE rnmV FALSE 0.253 161.000 0.121 1.000   NA
 3424883 3424884 BPUM_0025 BPUM_0026 rnmV ksgA TRUE 0.878 -7.000 0.093 1.000 N NA
 3424884 3424885 BPUM_0026 BPUM_0027 ksgA yabG FALSE 0.134 131.000 0.022 NA   NA
 3424885 3424886 BPUM_0027 BPUM_0028 yabG veg FALSE 0.094 214.000 0.116 NA   NA
 3424886 3424887 BPUM_0028 BPUM_0029 veg sspF FALSE 0.251 164.000 0.163 NA   NA
 3424887 3424888 BPUM_0029 BPUM_0030 sspF ispE FALSE 0.154 147.000 0.024 1.000   NA
 3424888 3424889 BPUM_0030 BPUM_0031 ispE purR TRUE 0.654 56.000 0.062 1.000 N NA
 3424889 3424890 BPUM_0031 BPUM_0032 purR yabJ TRUE 0.809 37.000 0.227 NA N NA
 3424890 3424891 BPUM_0032 BPUM_0033 yabJ spoVG FALSE 0.255 226.000 0.377 NA N NA
 3424891 3424892 BPUM_0033 BPUM_0034 spoVG gcaD FALSE 0.516 170.000 0.014 1.000 Y NA
 3424892 3424893 BPUM_0034 BPUM_0035 gcaD prs TRUE 0.798 23.000 0.069 1.000 N NA
 3424893 3424894 BPUM_0035 BPUM_0036 prs ctc FALSE 0.316 138.000 0.027 1.000 N NA
 3424894 3424895 BPUM_0036 BPUM_0037 ctc spoVC TRUE 0.906 140.000 0.496 0.032 Y NA
 3424895 3424896 BPUM_0037 BPUM_0038 spoVC yabK FALSE 0.339 56.000 0.033 NA   NA
 3424896 3424897 BPUM_0038 BPUM_0039 yabK mfd FALSE 0.302 68.000 0.035 NA   NA
 3424897 3424898 BPUM_0039 BPUM_0040 mfd spoVT TRUE 0.639 140.000 0.026 NA Y NA
 3424898 3424899 BPUM_0040 BPUM_0041 spoVT yabM FALSE 0.144 195.000 0.147 NA   NA
 3424899 3424900 BPUM_0041 BPUM_0042 yabM yabN TRUE 0.766 -10.000 0.058 1.000   NA
 3424900 3424901 BPUM_0042 BPUM_0043 yabN yabO TRUE 0.729 -3.000 0.054 1.000   NA
 3424901 3424902 BPUM_0043 BPUM_0044 yabO yabP FALSE 0.447 75.000 0.108 NA   NA
 3424902 3424903 BPUM_0044 BPUM_0045 yabP yabQ TRUE 0.937 -3.000 0.774 NA   NA
 3424903 3424904 BPUM_0045 BPUM_0046 yabQ divIC TRUE 0.683 19.000 0.074 NA   NA
 3424904 3424905 BPUM_0046 BPUM_0047 divIC yabR TRUE 0.617 83.000 0.134 1.000 N NA
 3424905 3424906 BPUM_0047 BPUM_t0001 yabR   FALSE 0.003 177.000 0.000 NA   NA
 3424906 3424907 BPUM_t0001 BPUM_t0002     FALSE 0.034 27.000 0.000 NA   NA
 3424907 3424908 BPUM_t0002 BPUM_0048   spoIIE FALSE 0.002 206.000 0.000 NA   NA
 3424908 3424909 BPUM_0048 BPUM_0049 spoIIE yabS FALSE 0.468 77.000 0.132 NA   NA
 3424909 3424910 BPUM_0049 BPUM_0050 yabS yabT TRUE 0.826 -16.000 0.133 NA   NA
 3424910 3424911 BPUM_0050 BPUM_0051 yabT tilS FALSE 0.216 97.000 0.018 1.000   NA
 3424911 3424912 BPUM_0051 BPUM_0052 tilS hprT TRUE 0.885 16.000 0.067 0.049 N NA
 3424912 3424913 BPUM_0052 BPUM_0053 hprT ftsH TRUE 0.631 96.000 0.192 1.000 N NA
 3424913 3424914 BPUM_0053 BPUM_0054 ftsH yacB FALSE 0.250 158.000 0.029 1.000 N NA
 3424914 3424915 BPUM_0054 BPUM_0055 yacB hslO TRUE 0.828 16.000 0.060 1.000 N NA
 3424915 3424916 BPUM_0055 BPUM_0056 hslO yacD TRUE 0.908 47.000 0.019 0.006 Y NA
 3424916 3424917 BPUM_0056 BPUM_0057 yacD cysK FALSE 0.494 78.000 0.035 1.000 N NA
 3424917 3424918 BPUM_0057 BPUM_0058 cysK pabB TRUE 0.781 125.000 0.107 1.000 Y NA
 3424918 3424919 BPUM_0058 BPUM_0059 pabB pabA TRUE 0.989 14.000 0.452 0.001 Y NA
 3424919 3424920 BPUM_0059 BPUM_0060 pabA pabC TRUE 0.985 -3.000 0.532 1.000 Y NA
 3424920 3424921 BPUM_0060 BPUM_0061 pabC sul TRUE 0.983 11.000 0.519 1.000 Y NA
 3424921 3424922 BPUM_0061 BPUM_0062 sul folB TRUE 0.966 17.000 0.176 1.000 Y NA
 3424922 3424923 BPUM_0062 BPUM_0063 folB folK TRUE 0.967 -3.000 0.142 1.000 Y NA
 3424923 3424924 BPUM_0063 BPUM_0064 folK yazB TRUE 0.805 -48.000 0.003 1.000 N NA
 3424924 3424925 BPUM_0064 BPUM_0065 yazB yacF TRUE 0.767 -7.000 0.002 1.000 N NA
 3424925 3424926 BPUM_0065 BPUM_0066 yacF lysS TRUE 0.758 91.000 0.021 1.000 Y NA
 3424926 3424927 BPUM_0066 BPUM_0067 lysS   FALSE 0.000 1559.000 0.000 NA   NA
 3424927 3424928 BPUM_0067 BPUM_r0004     FALSE 0.002 205.000 0.000 NA   NA
 3424928 3424929 BPUM_r0004 BPUM_r0005     FALSE 0.003 180.000 0.000 NA   NA
 3424929 3424930 BPUM_r0005 BPUM_r0006     FALSE 0.019 62.000 0.000 NA   NA
 3424930 3424931 BPUM_r0006 BPUM_0068   ctsR FALSE 0.004 174.000 0.000 NA   NA
 3424931 3424932 BPUM_0068 BPUM_0069 ctsR mcsA TRUE 0.929 6.000 0.681 NA   NA
 3424932 3424933 BPUM_0069 BPUM_0070 mcsA mcsB TRUE 0.947 5.000 0.848 1.000   NA
 3424933 3424934 BPUM_0070 BPUM_0071 mcsB clpC TRUE 0.944 -3.000 0.425 1.000 N NA
 3424934 3424935 BPUM_0071 BPUM_0072 clpC radA TRUE 0.745 154.000 0.062 0.014 Y NA
 3424935 3424936 BPUM_0072 BPUM_0073 radA disA TRUE 0.775 3.000 0.126 NA   NA
 3424936 3424937 BPUM_0073 BPUM_0074 disA yacL FALSE 0.208 154.000 0.088 NA   NA
 3424937 3424938 BPUM_0074 BPUM_0075 yacL ispD TRUE 0.757 14.000 0.108 NA   NA
 3424938 3424939 BPUM_0075 BPUM_0076 ispD ispF TRUE 0.981 4.000 0.419 1.000 Y NA
 3424939 3424940 BPUM_0076 BPUM_0077 ispF gltX FALSE 0.516 95.000 0.076 1.000 N NA
 3424940 3424941 BPUM_0077 BPUM_0078 gltX cysE FALSE 0.033 312.000 0.008 1.000 N NA
 3424941 3424942 BPUM_0078 BPUM_0079 cysE cysS TRUE 0.873 -3.000 0.039 0.049 N NA
 3424942 3424943 BPUM_0079 BPUM_0080 cysS yazC TRUE 0.808 4.000 0.129 1.000   NA
 3424943 3424944 BPUM_0080 BPUM_0081 yazC yacO TRUE 0.918 -16.000 0.150 0.004   NA
 3424944 3424945 BPUM_0081 BPUM_0082 yacO yacP TRUE 0.758 3.000 0.109 NA   NA
 3424945 3424946 BPUM_0082 BPUM_0083 yacP sigH TRUE 0.723 64.000 0.361 NA   NA
 3424946 3424947 BPUM_0083 BPUM_0084 sigH rpmGB TRUE 0.747 77.000 0.282 1.000 N NA
 3424947 3424948 BPUM_0084 BPUM_0085 rpmGB secE TRUE 0.730 36.000 0.080 1.000 N NA
 3424948 3424949 BPUM_0085 BPUM_0086 secE nusG TRUE 0.640 171.000 0.843 1.000 N NA
 3424949 3424950 BPUM_0086 BPUM_0087 nusG rplK TRUE 0.765 118.000 0.681 1.000 N NA
 3424950 3424951 BPUM_0087 BPUM_0088 rplK rplA TRUE 0.953 100.000 0.838 0.026 Y NA
 3424951 3424952 BPUM_0088 BPUM_0089 rplA rplJ FALSE 0.531 259.000 0.302 0.026 Y NA
 3424952 3424953 BPUM_0089 BPUM_0090 rplJ rplL TRUE 0.981 42.000 0.884 0.021 Y NA
 3424953 3424954 BPUM_0090 BPUM_0091 rplL ybxB TRUE 0.777 98.000 0.050 1.000 Y NA
 3424956 3424957 BPUM_0093 BPUM_0094 rpoB rpoC TRUE 0.978 62.000 0.851 0.001 Y NA
 3424957 3424958 BPUM_0094 BPUM_0095 rpoC ybxF FALSE 0.369 146.000 0.065 1.000 N NA
 3424958 3424959 BPUM_0095 BPUM_0096 ybxF rpsL TRUE 0.888 113.000 0.239 0.026 Y NA
 3424959 3424960 BPUM_0096 BPUM_0097 rpsL rpsG TRUE 0.892 121.000 0.224 0.003 Y NA
 3424960 3424961 BPUM_0097 BPUM_0098 rpsG fusA TRUE 0.960 55.000 0.579 1.000 Y NA
 3424961 3424962 BPUM_0098 BPUM_0099 fusA tufA TRUE 0.922 119.000 0.400 0.002 Y NA
 3424962 3424963 BPUM_0099 BPUM_0100 tufA ybaC FALSE 0.149 111.000 0.003 1.000   NA
 3424963 3424964 BPUM_0100 BPUM_0101 ybaC rpsJ FALSE 0.005 219.000 0.000 1.000   NA
 3424964 3424965 BPUM_0101 BPUM_0102 rpsJ rplC TRUE 0.972 38.000 0.467 0.026 Y NA
 3424965 3424966 BPUM_0102 BPUM_0103 rplC rplD TRUE 0.980 28.000 0.544 0.021 Y NA
 3424966 3424967 BPUM_0103 BPUM_0104 rplD rplW TRUE 0.984 0.000 0.307 0.021 Y NA
 3424967 3424968 BPUM_0104 BPUM_0105 rplW rplB TRUE 0.985 29.000 0.849 0.025 Y NA
 3424968 3424969 BPUM_0105 BPUM_0106 rplB rpsS TRUE 0.975 58.000 0.820 0.026 Y NA
 3424969 3424970 BPUM_0106 BPUM_0107 rpsS rplV TRUE 0.989 18.000 0.769 0.026 Y NA
 3424970 3424971 BPUM_0107 BPUM_0108 rplV rpsC TRUE 0.990 4.000 0.719 0.026 Y NA
 3424971 3424972 BPUM_0108 BPUM_0109 rpsC rplP TRUE 0.991 2.000 0.828 0.026 Y NA
 3424972 3424973 BPUM_0109 BPUM_0110 rplP rpmC TRUE 0.994 -34.000 0.802 0.021 Y NA
 3424973 3424974 BPUM_0110 BPUM_0111 rpmC rpsQ TRUE 0.986 26.000 0.828 0.021 Y NA
 3424974 3424975 BPUM_0111 BPUM_0112 rpsQ rplN TRUE 0.979 40.000 0.791 0.026 Y NA
 3424975 3424976 BPUM_0112 BPUM_0113 rplN rplX TRUE 0.936 36.000 0.071 0.026 Y NA
 3424976 3424977 BPUM_0113 BPUM_0114 rplX rplE TRUE 0.950 26.000 0.057 0.021 Y NA
 3424977 3424978 BPUM_0114 BPUM_0115 rplE rpsN1 TRUE 0.983 23.000 0.496 0.021 Y NA
 3424978 3424979 BPUM_0115 BPUM_0116 rpsN1 rpsH TRUE 0.976 32.000 0.473 0.021 Y NA
 3424979 3424980 BPUM_0116 BPUM_0117 rpsH rplF TRUE 0.990 17.000 0.808 0.021 Y NA
 3424980 3424981 BPUM_0117 BPUM_0118 rplF rplR TRUE 0.982 33.000 0.815 0.021 Y NA
 3424981 3424982 BPUM_0118 BPUM_0119 rplR rpsE TRUE 0.987 25.000 0.814 0.026 Y NA
 3424982 3424983 BPUM_0119 BPUM_0120 rpsE rpmD TRUE 0.991 14.000 0.789 0.026 Y NA
 3424983 3424984 BPUM_0120 BPUM_0121 rpmD rplO TRUE 0.982 31.000 0.653 0.003 Y NA
 3424984 3424985 BPUM_0121 BPUM_0122 rplO secY TRUE 0.958 2.000 0.730 1.000 N NA
 3424985 3424986 BPUM_0122 BPUM_0123 secY adk TRUE 0.800 56.000 0.241 1.000 N NA
 3424986 3424987 BPUM_0123 BPUM_0124 adk map TRUE 0.928 -3.000 0.290 1.000 N NA
 3424987 3424988 BPUM_0124 BPUM_0125 map   FALSE 0.011 91.000 0.000 NA   NA
 3424988 3424989 BPUM_0125 BPUM_0126   infA FALSE 0.047 19.000 0.000 NA   NA
 3424989 3424990 BPUM_0126 BPUM_0127 infA rpmJ TRUE 0.787 32.000 0.257 1.000   NA
 3424990 3424991 BPUM_0127 BPUM_0128 rpmJ rpsM TRUE 0.877 22.000 0.194 0.021   NA
 3424991 3424992 BPUM_0128 BPUM_0129 rpsM rpsK TRUE 0.989 21.000 0.810 0.021 Y NA
 3424992 3424993 BPUM_0129 BPUM_0130 rpsK rpoA FALSE 0.440 176.000 0.308 1.000 N NA
 3424993 3424994 BPUM_0130 BPUM_0131 rpoA rplQ TRUE 0.869 77.000 0.873 1.000 N NA
 3424994 3424995 BPUM_0131 BPUM_0132 rplQ ybxA FALSE 0.447 125.000 0.074 1.000 N NA
 3424995 3424996 BPUM_0132 BPUM_0133 ybxA ybaE TRUE 0.993 -24.000 0.713 0.031 Y NA
 3424996 3424997 BPUM_0133 BPUM_0134 ybaE ybaF TRUE 0.967 -3.000 0.139 1.000 Y NA
 3424997 3424998 BPUM_0134 BPUM_0135 ybaF truA TRUE 0.893 12.000 0.170 1.000 N NA
 3424998 3424999 BPUM_0135 BPUM_0136 truA rplM TRUE 0.590 167.000 0.052 1.000 Y NA
 3424999 3425000 BPUM_0136 BPUM_0137 rplM rpsI TRUE 0.987 21.000 0.601 0.021 Y NA
 3425000 3425001 BPUM_0137 BPUM_0138 rpsI ynaD FALSE 0.313 193.000 0.000 1.000 Y NA
 3425001 3425002 BPUM_0138 BPUM_0139 ynaD   FALSE 0.173 98.000 0.000 0.084   NA
 3425002 3425003 BPUM_0139 BPUM_0140     FALSE 0.487 20.000 0.000 0.084   NA
 3425003 3425004 BPUM_0140 BPUM_0141     FALSE 0.011 91.000 0.000 NA   NA
 3425006 3425007 BPUM_0143 BPUM_0144 ybaK cwlD TRUE 0.649 59.000 0.211 NA   NA
 3425007 3425008 BPUM_0144 BPUM_0145 cwlD ybaL TRUE 0.624 104.000 0.211 1.000 N NA
 3425012 3425013 BPUM_r0007 BPUM_r0008     FALSE 0.003 180.000 0.000 NA   NA
 3425013 3425014 BPUM_r0008 BPUM_r0009     FALSE 0.019 62.000 0.000 NA   NA
 3425014 3425015 BPUM_r0009 BPUM_t0003     FALSE 0.025 40.000 0.000 NA   NA
 3425015 3425016 BPUM_t0003 BPUM_0149     FALSE 0.000 839.000 0.000 NA   NA
 3425016 3425017 BPUM_0149 BPUM_0150   hag1 FALSE 0.057 -3.000 0.000 NA   NA
 3425017 3425018 BPUM_0150 BPUM_0151 hag1 sulP FALSE 0.014 331.000 0.000 1.000 N NA
 3425018 3425019 BPUM_0151 BPUM_0152 sulP   FALSE 0.495 59.000 0.062 1.000   NA
 3425020 3425021 BPUM_0153 BPUM_0154 ybbC ybbD TRUE 0.797 12.000 0.153 NA   NA
 3425021 3425022 BPUM_0154 BPUM_0155 ybbD ybbE TRUE 0.842 14.000 0.068 1.000 N NA
 3425022 3425023 BPUM_0155 BPUM_0156 ybbE ybbF TRUE 0.819 20.000 0.071 1.000 N NA
 3425023 3425024 BPUM_0156 BPUM_0157 ybbF   TRUE 0.853 -3.000 0.071 1.000 N NA
 3425024 3425025 BPUM_0157 BPUM_0158   ybbI TRUE 0.921 15.000 0.240 0.004   NA
 3425026 3425027 BPUM_t0004 BPUM_t0005     FALSE 0.054 8.000 0.000 NA   NA
 3425027 3425028 BPUM_t0005 BPUM_t0006     FALSE 0.054 4.000 0.000 NA   NA
 3425028 3425029 BPUM_t0006 BPUM_t0007     FALSE 0.032 28.000 0.000 NA   NA
 3425029 3425030 BPUM_t0007 BPUM_t0008     FALSE 0.054 5.000 0.000 NA   NA
 3425030 3425031 BPUM_t0008 BPUM_0159   rocF FALSE 0.007 135.000 0.000 NA   NA
 3425031 3425032 BPUM_0159 BPUM_0160 rocF sigW FALSE 0.111 160.000 0.000 1.000 N NA
 3425032 3425033 BPUM_0160 BPUM_0161 sigW ybbM TRUE 0.984 15.000 0.583 1.000 Y NA
 3425033 3425034 BPUM_0161 BPUM_0162 ybbM ybbP FALSE 0.049 219.000 0.028 1.000   NA
 3425034 3425035 BPUM_0162 BPUM_0163 ybbP ybbR TRUE 0.927 -7.000 0.502 NA   NA
 3425035 3425036 BPUM_0163 BPUM_0164 ybbR glmM TRUE 0.716 26.000 0.150 NA   NA
 3425036 3425037 BPUM_0164 BPUM_0165 glmM glmS FALSE 0.017 576.000 0.030 1.000 N NA
 3425037 3425038 BPUM_0165 BPUM_0166 glmS   FALSE 0.019 63.000 0.000 NA   NA
 3425038 3425039 BPUM_0166 BPUM_0167     FALSE 0.001 248.000 0.000 NA   NA
 3425039 3425040 BPUM_0167 BPUM_0168     FALSE 0.005 163.000 0.000 NA   NA
 3425040 3425041 BPUM_0168 BPUM_0169     FALSE 0.047 19.000 0.000 NA   NA
 3425041 3425042 BPUM_0169 BPUM_0170     TRUE 0.932 -3.000 0.569 1.000   NA
 3425042 3425043 BPUM_0170 BPUM_0171     FALSE 0.008 117.000 0.000 NA   NA
 3425043 3425044 BPUM_0171 BPUM_0172     FALSE 0.002 202.000 0.000 NA   NA
 3425044 3425045 BPUM_0172 BPUM_0173     FALSE 0.006 149.000 0.000 NA   NA
 3425045 3425046 BPUM_0173 BPUM_0174     FALSE 0.005 162.000 0.000 NA   NA
 3425046 3425047 BPUM_0174 BPUM_0175     TRUE 0.958 6.000 0.750 1.000 N NA
 3425047 3425048 BPUM_0175 BPUM_0176     TRUE 0.947 -16.000 0.714 NA   NA
 3425048 3425049 BPUM_0176 BPUM_0177     FALSE 0.003 188.000 0.000 NA   NA
 3425049 3425050 BPUM_0177 BPUM_0178     FALSE 0.057 -3.000 0.000 NA   NA
 3425050 3425051 BPUM_0178 BPUM_0179     FALSE 0.021 56.000 0.000 NA   NA
 3425051 3425052 BPUM_0179 BPUM_0180   ybxG FALSE 0.001 230.000 0.000 NA   NA
 3425053 3425054 BPUM_0181 BPUM_0182   glpT TRUE 0.681 93.000 0.250 1.000 N NA
 3425061 3425062 BPUM_0189 BPUM_0190 yrkD yrkE FALSE 0.338 125.000 0.132 NA   NA
 3425062 3425063 BPUM_0190 BPUM_0191 yrkE   TRUE 0.849 15.000 0.231 NA   NA
 3425063 3425064 BPUM_0191 BPUM_0192   yrkF TRUE 0.858 48.000 0.032 NA Y NA
 3425064 3425065 BPUM_0192 BPUM_0193 yrkF   TRUE 0.884 15.000 0.286 1.000   NA
 3425065 3425066 BPUM_0193 BPUM_0194   yrkI TRUE 0.771 34.000 0.241 1.000   NA
 3425066 3425067 BPUM_0194 BPUM_0195 yrkI yrkJ TRUE 0.688 59.000 0.214 1.000   NA
 3425068 3425069 BPUM_0196 BPUM_0197   proS2 FALSE 0.007 135.000 0.000 NA   NA
 3425072 3425073 BPUM_0200 BPUM_0201     FALSE 0.022 51.000 0.000 NA   NA
 3425073 3425074 BPUM_0201 BPUM_0202     FALSE 0.057 -3.000 0.000 NA   NA
 3425074 3425075 BPUM_0202 BPUM_0203   yvgN FALSE 0.000 435.000 0.000 NA   NA
 3425077 3425078 BPUM_0205 BPUM_0206 ybfQ ybeC FALSE 0.001 327.000 0.000 NA   NA
 3425080 3425081 BPUM_0208 BPUM_0209     FALSE 0.004 235.000 0.000 1.000   NA
 3425081 3425082 BPUM_0209 BPUM_0210     TRUE 0.961 19.000 0.154 1.000 Y NA
 3425082 3425083 BPUM_0210 BPUM_0211     FALSE 0.000 471.000 0.000 NA   NA
 3425086 3425087 BPUM_0214 BPUM_0215   ydhR TRUE 0.914 -3.000 0.000 1.000 Y NA
 3425087 3425088 BPUM_0215 BPUM_0216 ydhR   TRUE 0.783 58.000 0.000 1.000 Y NA
 3425088 3425089 BPUM_0216 BPUM_0217     TRUE 0.931 29.000 0.100 1.000 Y NA
 3425089 3425090 BPUM_0217 BPUM_0218     TRUE 0.980 40.000 0.800 0.016 Y NA
 3425090 3425091 BPUM_0218 BPUM_0219     TRUE 0.990 -3.000 0.600 0.013 Y NA
 3425092 3425093 BPUM_0220 BPUM_0221 wprA ylqB FALSE 0.009 107.000 0.000 NA   NA
 3425094 3425095 BPUM_0222 BPUM_0223   ybgF FALSE 0.008 122.000 0.000 NA   NA
 3425095 3425096 BPUM_0223 BPUM_0224 ybgF mmuM TRUE 0.937 47.000 0.231 1.000 Y NA
 3425097 3425098 BPUM_0225 BPUM_0226 yxkD   FALSE 0.010 98.000 0.000 NA   NA
 3425098 3425099 BPUM_0226 BPUM_0227     TRUE 0.950 -7.000 0.875 NA   NA
 3425099 3425100 BPUM_0227 BPUM_0228     FALSE 0.057 -3.000 0.000 NA   NA
 3425106 3425107 BPUM_0234 BPUM_0235   yxaF FALSE 0.399 38.000 0.000 1.000 N NA
 3425107 3425108 BPUM_0235 BPUM_0236 yxaF yxaG FALSE 0.206 81.000 0.000 0.093   NA
 3425108 3425109 BPUM_0236 BPUM_0237 yxaG adhB FALSE 0.016 150.000 0.000 1.000   NA
 3425111 3425112 BPUM_0239 BPUM_0240 ydaB   FALSE 0.308 67.000 0.000 1.000 N NA
 3425112 3425113 BPUM_0240 BPUM_0241     FALSE 0.010 101.000 0.000 NA   NA
 3425113 3425114 BPUM_0241 BPUM_0242   yfhM FALSE 0.001 309.000 0.000 NA   NA
 3425115 3425116 BPUM_0243 BPUM_0244 glnT glsA1 TRUE 0.927 31.000 0.095 1.000 Y NA
 3425117 3425118 BPUM_0245 BPUM_0246 ycbA ycbB TRUE 0.968 5.000 0.167 1.000 Y NA
 3425118 3425119 BPUM_0246 BPUM_0247 ycbB yccF FALSE 0.007 192.000 0.000 1.000   NA
 3425122 3425123 BPUM_0250 BPUM_0251 yccG yccH TRUE 0.909 12.000 0.000 1.000 Y NA
 3425124 3425125 BPUM_0252 BPUM_0253 natA natB TRUE 0.980 0.000 0.448 NA Y NA
 3425125 3425126 BPUM_0253 BPUM_0254 natB   FALSE 0.007 139.000 0.000 NA   NA
 3425128 3425129 BPUM_0256 BPUM_0257 cwlJ ycdF FALSE 0.023 120.000 0.000 1.000   NA
 3425130 3425131 BPUM_0258 BPUM_0259     FALSE 0.033 210.000 0.000 NA N NA
 3425132 3425133 BPUM_0260 BPUM_0261 yceC yceD TRUE 0.983 21.000 0.364 0.004 Y NA
 3425133 3425134 BPUM_0261 BPUM_0262 yceD yceE TRUE 0.976 42.000 0.571 0.004 Y NA
 3425134 3425135 BPUM_0262 BPUM_0263 yceE   TRUE 0.602 142.000 0.308 1.000 N NA
 3425135 3425136 BPUM_0263 BPUM_0264     FALSE 0.496 95.000 0.065 1.000 N NA
 3425136 3425137 BPUM_0264 BPUM_0265     TRUE 0.902 -10.000 0.325 NA   NA
 3425137 3425138 BPUM_0265 BPUM_0266     TRUE 0.904 -7.000 0.358 NA   NA
 3425138 3425139 BPUM_0266 BPUM_0267     TRUE 0.879 -3.000 0.296 NA   NA
 3425139 3425140 BPUM_0267 BPUM_0268     FALSE 0.209 71.000 0.013 NA   NA
 3425140 3425141 BPUM_0268 BPUM_0269   yceH TRUE 0.931 15.000 0.727 NA   NA
 3425141 3425142 BPUM_0269 BPUM_0270 yceH opuAA FALSE 0.006 401.000 0.000 NA N NA
 3425142 3425143 BPUM_0270 BPUM_0271 opuAA opuAB TRUE 0.954 11.000 0.062 1.000 Y NA
 3425143 3425144 BPUM_0271 BPUM_0272 opuAB opuAC TRUE 0.975 0.000 0.143 0.048 Y NA
 3425144 3425145 BPUM_0272 BPUM_0273 opuAC   FALSE 0.025 40.000 0.000 NA   NA
 3425145 3425146 BPUM_0273 BPUM_0274     FALSE 0.008 125.000 0.000 NA   NA
 3425148 3425149 BPUM_0276 BPUM_0277 ycgA ldh FALSE 0.005 215.000 0.000 1.000   NA
 3425149 3425150 BPUM_0277 BPUM_0278 ldh lctP TRUE 0.921 40.000 0.129 1.000 Y NA
 3425152 3425153 BPUM_0280 BPUM_0281 yhjL yhjK TRUE 0.819 -25.000 0.021 0.036   NA
 3425153 3425154 BPUM_0281 BPUM_0282 yhjK yhjJ TRUE 0.922 -3.000 0.471 1.000   NA
 3425154 3425155 BPUM_0282 BPUM_0283 yhjJ glcP TRUE 0.750 55.000 0.294 1.000   NA
 3425155 3425156 BPUM_0283 BPUM_0284 glcP ycgF FALSE 0.181 113.000 0.000 1.000 N NA
 3425156 3425157 BPUM_0284 BPUM_0285 ycgF   FALSE 0.010 101.000 0.000 NA   NA
 3425157 3425158 BPUM_0285 BPUM_0286   yqcI FALSE 0.003 181.000 0.000 NA   NA
 3425160 3425161 BPUM_0288 BPUM_0289 ycgI nadE FALSE 0.034 199.000 0.010 NA   NA
 3425161 3425162 BPUM_0289 BPUM_0290 nadE aroK FALSE 0.277 135.000 0.007 1.000 N NA
 3425162 3425163 BPUM_0290 BPUM_0291 aroK dap1 FALSE 0.072 362.000 0.000 1.000 Y NA
 3425163 3425164 BPUM_0291 BPUM_0292 dap1   FALSE 0.505 78.000 0.040 1.000 N NA
 3425164 3425165 BPUM_0292 BPUM_0293     TRUE 0.666 121.000 0.333 1.000 N NA
 3425171 3425172 BPUM_0299 BPUM_0300 ycgL ycgM FALSE 0.093 161.000 0.026 NA   NA
 3425172 3425173 BPUM_0300 BPUM_0301 ycgM ycgN TRUE 0.818 24.000 0.103 1.000 N NA
 3425173 3425174 BPUM_0301 BPUM_0302 ycgN ycgP FALSE 0.125 127.000 0.000 NA N NA
 3425174 3425175 BPUM_0302 BPUM_0303 ycgP arsB FALSE 0.129 122.000 0.000 NA N NA
 3425176 3425177 BPUM_0304 BPUM_0305 yckA yckB TRUE 0.973 13.000 0.125 0.048 Y NA
 3425180 3425181 BPUM_0308 BPUM_0309 lrpA yokD FALSE 0.444 30.000 0.000 1.000 N NA
 3425182 3425183 BPUM_0310 BPUM_0311 nin tlpC FALSE 0.008 121.000 0.000 NA   NA
 3425183 3425184 BPUM_0311 BPUM_0312 tlpC nucA FALSE 0.008 128.000 0.000 NA   NA
 3425185 3425186 BPUM_0313 BPUM_0314     FALSE 0.075 -30.000 0.000 NA   NA
 3425186 3425187 BPUM_0314 BPUM_0315     TRUE 0.992 -10.000 0.500 0.001 Y NA
 3425187 3425188 BPUM_0315 BPUM_0316     TRUE 0.984 -3.000 0.500 1.000 Y NA
 3425188 3425189 BPUM_0316 BPUM_0317     TRUE 0.973 9.000 0.222 1.000 Y NA
 3425189 3425190 BPUM_0317 BPUM_0318     TRUE 0.937 39.000 0.200 1.000 Y NA
 3425190 3425191 BPUM_0318 BPUM_0319     FALSE 0.006 1399.000 0.000 1.000 N NA
 3425191 3425192 BPUM_0319 BPUM_0320     TRUE 0.987 21.000 0.571 0.004 Y NA
 3425192 3425193 BPUM_0320 BPUM_0321     TRUE 0.969 45.000 0.400 0.004 Y NA
 3425193 3425194 BPUM_0321 BPUM_0322     TRUE 0.843 64.000 0.000 0.004 Y NA
 3425194 3425195 BPUM_0322 BPUM_0323     TRUE 0.988 14.000 0.429 0.004 Y NA
 3425195 3425196 BPUM_0323 BPUM_0324     TRUE 0.948 7.000 0.000 0.001 Y NA
 3425199 3425200 BPUM_0327 BPUM_0328 sfp   FALSE 0.011 90.000 0.000 NA   NA
 3425200 3425201 BPUM_0328 BPUM_0329   yczE FALSE 0.012 85.000 0.000 NA   NA
 3425201 3425202 BPUM_0329 BPUM_0330 yczE   FALSE 0.012 87.000 0.000 NA   NA
 3425203 3425204 BPUM_0331 BPUM_0332   yhcS1 FALSE 0.054 7.000 0.000 NA   NA
 3425204 3425205 BPUM_0332 BPUM_0333 yhcS1 abrB FALSE 0.012 88.000 0.000 NA   NA
 3425205 3425206 BPUM_0333 BPUM_0334 abrB   FALSE 0.000 605.000 0.000 NA   NA
 3425206 3425207 BPUM_0334 BPUM_0335     TRUE 0.818 32.000 0.400 NA   NA
 3425207 3425208 BPUM_0335 BPUM_0336     TRUE 0.825 6.000 0.188 NA   NA
 3425208 3425209 BPUM_0336 BPUM_0337     TRUE 0.904 1.000 0.438 NA   NA
 3425210 3425211 BPUM_0338 BPUM_0339 yckI yckJ TRUE 0.982 13.000 0.481 1.000 Y NA
 3425211 3425212 BPUM_0339 BPUM_0340 yckJ yckK TRUE 0.991 -13.000 0.594 0.047 Y NA
 3425213 3425214 BPUM_0341 BPUM_0342   rocE FALSE 0.001 312.000 0.000 NA   NA
 3425216 3425217 BPUM_0344 BPUM_0345 yclG yxeK FALSE 0.002 201.000 0.000 NA   NA
 3425217 3425218 BPUM_0345 BPUM_0346 yxeK yxeL TRUE 0.925 18.000 0.750 NA   NA
 3425218 3425219 BPUM_0346 BPUM_0347 yxeL yxeM TRUE 0.919 23.000 0.750 1.000   NA
 3425219 3425220 BPUM_0347 BPUM_0348 yxeM yxeN TRUE 0.971 25.000 0.231 0.047 Y NA
 3425220 3425221 BPUM_0348 BPUM_0349 yxeN yxeO TRUE 0.980 13.000 0.381 1.000 Y NA
 3425221 3425222 BPUM_0349 BPUM_0350 yxeO yxeP TRUE 0.687 34.000 0.143 1.000   NA
 3425222 3425223 BPUM_0350 BPUM_0351 yxeP yxeQ TRUE 0.841 -9.000 0.136 1.000   NA
 3425225 3425226 BPUM_0353 BPUM_0354     TRUE 0.955 -10.000 0.034 1.000 Y NA
 3425227 3425228 BPUM_0355 BPUM_0356   yclM FALSE 0.073 165.000 0.000 NA N NA
 3425228 3425229 BPUM_0356 BPUM_0357 yclM ycnB FALSE 0.086 173.000 0.000 1.000 N NA
 3425229 3425230 BPUM_0357 BPUM_0358 ycnB ycnC TRUE 0.943 17.000 0.500 1.000 N NA
 3425230 3425231 BPUM_0358 BPUM_0359 ycnC   FALSE 0.009 106.000 0.000 NA   NA
 3425234 3425235 BPUM_0362 BPUM_0363 gabT   TRUE 0.941 22.000 0.065 1.000 Y NA
 3425235 3425236 BPUM_0363 BPUM_0364   gabD TRUE 0.897 -25.000 0.097 1.000 N NA
 3425239 3425240 BPUM_0367 BPUM_0368 ycnI ycnJ FALSE 0.050 17.000 0.000 NA   NA
 3425241 3425242 BPUM_0369 BPUM_0370 mtlA   TRUE 0.827 97.000 0.033 0.013 Y NA
 3425242 3425243 BPUM_0370 BPUM_0371   mtlD TRUE 0.954 2.000 0.062 1.000 Y NA
 3425243 3425244 BPUM_0371 BPUM_0372 mtlD   FALSE 0.206 100.000 0.000 1.000 N NA
 3425244 3425245 BPUM_0372 BPUM_0373     FALSE 0.026 227.000 0.000 NA N NA
 3425246 3425247 BPUM_0374 BPUM_0375 yycQ   FALSE 0.035 26.000 0.000 NA   NA
 3425247 3425248 BPUM_0375 BPUM_0376     FALSE 0.037 25.000 0.000 NA   NA
 3425249 3425250 BPUM_0377 BPUM_0378   ycsE FALSE 0.008 128.000 0.000 NA   NA
 3425250 3425251 BPUM_0378 BPUM_0379 ycsE ycsF FALSE 0.011 171.000 0.000 1.000   NA
 3425251 3425252 BPUM_0379 BPUM_0380 ycsF ycsG TRUE 0.750 27.000 0.158 1.000   NA
 3425252 3425253 BPUM_0380 BPUM_0381 ycsG ycsI TRUE 0.727 6.000 0.082 NA   NA
 3425253 3425254 BPUM_0381 BPUM_0382 ycsI kipI FALSE 0.540 19.000 0.032 NA   NA
 3425254 3425255 BPUM_0382 BPUM_0383 kipI kipA TRUE 0.985 -3.000 0.596 1.000 Y NA
 3425255 3425256 BPUM_0383 BPUM_0384 kipA kipR TRUE 0.871 16.000 0.128 1.000 N NA
 3425258 3425259 BPUM_0386 BPUM_0387 lipC   FALSE 0.032 90.000 0.000 1.000   NA
 3425259 3425260 BPUM_0387 BPUM_0388   mtlR FALSE 0.022 131.000 0.000 1.000   NA
 3425262 3425263 BPUM_0390 BPUM_0391 ydaD ydaG FALSE 0.002 289.000 0.000 1.000   NA
 3425264 3425265 BPUM_0392 BPUM_0393     FALSE 0.000 445.000 0.000 NA   NA
 3425265 3425266 BPUM_0393 BPUM_0394     FALSE 0.054 14.000 0.000 NA   NA
 3425268 3425269 BPUM_0396 BPUM_0397 ydzA ydhC FALSE 0.007 137.000 0.000 NA   NA
 3425270 3425271 BPUM_0398 BPUM_0399   ycsA FALSE 0.010 97.000 0.000 NA   NA
 3425271 3425272 BPUM_0399 BPUM_0400 ycsA topB FALSE 0.285 73.000 0.000 1.000 N NA
 3425272 3425273 BPUM_0400 BPUM_0401 topB ydaJ FALSE 0.007 198.000 0.000 1.000   NA
 3425273 3425274 BPUM_0401 BPUM_0402 ydaJ ydaK TRUE 0.796 -19.000 0.067 1.000   NA
 3425274 3425275 BPUM_0402 BPUM_0403 ydaK ydaL TRUE 0.796 -10.000 0.111 NA   NA
 3425275 3425276 BPUM_0403 BPUM_0404 ydaL ydaM TRUE 0.843 -7.000 0.180 NA   NA
 3425276 3425277 BPUM_0404 BPUM_0405 ydaM ydaN TRUE 0.806 23.000 0.230 NA   NA
 3425277 3425278 BPUM_0405 BPUM_0406 ydaN ydaO FALSE 0.001 328.000 0.000 NA   NA
 3425278 3425279 BPUM_0406 BPUM_0407 ydaO ydaP TRUE 0.816 71.000 0.019 1.000 Y NA
 3425279 3425280 BPUM_0407 BPUM_0408 ydaP yqcG FALSE 0.001 237.000 0.000 NA   NA
 3425280 3425281 BPUM_0408 BPUM_0409 yqcG   FALSE 0.054 5.000 0.000 NA   NA
 3425281 3425282 BPUM_0409 BPUM_0410     FALSE 0.001 268.000 0.000 NA   NA
 3425283 3425284 BPUM_0411 BPUM_0412   ydaF FALSE 0.010 99.000 0.000 NA   NA
 3425284 3425285 BPUM_0412 BPUM_0413 ydaF mntH FALSE 0.293 71.000 0.000 1.000 N NA
 3425285 3425286 BPUM_0413 BPUM_0414 mntH ydaS FALSE 0.005 223.000 0.000 1.000   NA
 3425289 3425290 BPUM_0417 BPUM_0418 dctS dctR TRUE 0.984 -3.000 0.500 1.000 Y NA
 3425290 3425291 BPUM_0418 BPUM_0419 dctR dctP FALSE 0.370 125.000 0.037 1.000 N NA
 3425291 3425292 BPUM_0419 BPUM_0420 dctP ydbI FALSE 0.040 210.000 0.025 NA   NA
 3425292 3425293 BPUM_0420 BPUM_0421 ydbI   FALSE 0.001 276.000 0.000 NA   NA
 3425293 3425294 BPUM_0421 BPUM_0422   ydbJ FALSE 0.304 137.000 0.021 1.000 N NA
 3425294 3425295 BPUM_0422 BPUM_0423 ydbJ   TRUE 0.819 -22.000 0.118 NA   NA
 3425295 3425296 BPUM_0423 BPUM_0424   ydbL FALSE 0.008 118.000 0.000 NA   NA
 3425297 3425298 BPUM_0425 BPUM_0426 ydbN ydbP FALSE 0.000 347.000 0.000 NA   NA
 3425299 3425300 BPUM_0427 BPUM_0428 ddl murF TRUE 0.865 82.000 0.044 0.006 Y NA
 3425300 3425301 BPUM_0428 BPUM_0429 murF   TRUE 0.784 28.000 0.214 1.000   NA
 3425301 3425302 BPUM_0429 BPUM_0430     FALSE 0.008 128.000 0.000 NA   NA
 3425302 3425303 BPUM_0430 BPUM_0431   ydbR FALSE 0.008 115.000 0.000 NA   NA
 3425303 3425304 BPUM_0431 BPUM_0432 ydbR ydbS FALSE 0.123 111.000 0.011 NA   NA
 3425304 3425305 BPUM_0432 BPUM_0433 ydbS ydbT TRUE 0.936 -10.000 0.600 NA   NA
 3425307 3425308 BPUM_0435 BPUM_0436 acpS ydcC FALSE 0.192 170.000 0.038 NA N NA
 3425308 3425309 BPUM_0436 BPUM_0437 ydcC alr FALSE 0.204 342.000 0.194 NA Y NA
 3425309 3425310 BPUM_0437 BPUM_0438 alr ydcD FALSE 0.054 297.000 0.043 1.000 N NA
 3425310 3425311 BPUM_0438 BPUM_0439 ydcD ydcE TRUE 0.911 5.000 0.221 1.000 N NA
 3425311 3425312 BPUM_0439 BPUM_0440 ydcE rsbR TRUE 0.692 115.000 0.032 NA Y NA
 3425312 3425313 BPUM_0440 BPUM_0441 rsbR rsbS TRUE 0.972 5.000 0.258 NA Y NA
 3425313 3425314 BPUM_0441 BPUM_0442 rsbS rsbT TRUE 0.975 3.000 0.320 NA Y NA
 3425314 3425315 BPUM_0442 BPUM_0443 rsbT rsbU TRUE 0.985 11.000 0.617 1.000 Y NA
 3425315 3425316 BPUM_0443 BPUM_0444 rsbU rsbV TRUE 0.949 60.000 0.440 1.000 Y NA
 3425316 3425317 BPUM_0444 BPUM_0445 rsbV rsbW TRUE 0.987 -3.000 0.714 1.000 Y NA
 3425317 3425318 BPUM_0445 BPUM_0446 rsbW sigB TRUE 0.974 -34.000 0.838 1.000 N NA
 3425318 3425319 BPUM_0446 BPUM_0447 sigB rsbX TRUE 0.747 0.000 0.068 1.000   NA
 3425319 3425320 BPUM_0447 BPUM_0448 rsbX ydcI FALSE 0.270 77.000 0.018 1.000   NA
 3425322 3425323 BPUM_0450 BPUM_0451 ydcK acoA FALSE 0.003 194.000 0.000 NA   NA
 3425323 3425324 BPUM_0451 BPUM_0452 acoA acoB TRUE 0.990 21.000 0.804 0.002 Y NA
 3425324 3425325 BPUM_0452 BPUM_0453 acoB acoC TRUE 0.980 18.000 0.295 0.080 Y NA
 3425325 3425326 BPUM_0453 BPUM_0454 acoC acoL TRUE 0.983 19.000 0.294 0.002 Y NA
 3425326 3425327 BPUM_0454 BPUM_0455 acoL acoR TRUE 0.642 109.000 0.259 1.000 N NA
 3425327 3425328 BPUM_0455 BPUM_t0009 acoR   FALSE 0.002 212.000 0.000 NA   NA
 3425328 3425329 BPUM_t0009 BPUM_t0010     FALSE 0.054 5.000 0.000 NA   NA
 3425329 3425330 BPUM_t0010 BPUM_t0011     FALSE 0.054 10.000 0.000 NA   NA
 3425330 3425331 BPUM_t0011 BPUM_t0012     FALSE 0.040 23.000 0.000 NA   NA
 3425331 3425332 BPUM_t0012 BPUM_t0013     FALSE 0.030 31.000 0.000 NA   NA
 3425332 3425333 BPUM_t0013 BPUM_t0014     FALSE 0.054 8.000 0.000 NA   NA
 3425333 3425334 BPUM_t0014 BPUM_t0015     FALSE 0.022 49.000 0.000 NA   NA
 3425334 3425335 BPUM_t0015 BPUM_0456     FALSE 0.075 -26.000 0.000 NA   NA
 3425335 3425336 BPUM_0456 BPUM_0457     FALSE 0.039 24.000 0.000 NA   NA
 3425336 3425337 BPUM_0457 BPUM_0458   grpB FALSE 0.002 213.000 0.000 NA   NA
 3425337 3425338 BPUM_0458 BPUM_0459 grpB cspC FALSE 0.001 286.000 0.000 NA   NA
 3425339 3425340 BPUM_0460 BPUM_0461 ydeB adhA FALSE 0.004 241.000 0.000 1.000   NA
 3425343 3425344 BPUM_0464 BPUM_0465   lmrB FALSE 0.042 73.000 0.000 1.000   NA
 3425344 3425345 BPUM_0465 BPUM_0466 lmrB   FALSE 0.007 195.000 0.000 1.000   NA
 3425345 3425346 BPUM_0466 BPUM_0467     FALSE 0.007 142.000 0.000 NA   NA
 3425346 3425347 BPUM_0467 BPUM_0468   dltE FALSE 0.009 105.000 0.000 NA   NA
 3425350 3425351 BPUM_0471 BPUM_0472     FALSE 0.055 57.000 0.000 1.000   NA
 3425352 3425353 BPUM_0473 BPUM_0474     FALSE 0.074 -25.000 0.000 NA   NA
 3425353 3425354 BPUM_0474 BPUM_0475   blt TRUE 0.695 32.000 0.047 1.000 N NA
 3425355 3425356 BPUM_0476 BPUM_0477     FALSE 0.057 -3.000 0.000 NA   NA
 3425360 3425361 BPUM_0481 BPUM_0482     TRUE 0.607 -3.000 0.000 1.000 N NA
 3425361 3425362 BPUM_0482 BPUM_0483     FALSE 0.045 69.000 0.000 1.000   NA
 3425363 3425364 BPUM_0484 BPUM_0485     FALSE 0.227 90.000 0.000 1.000 N NA
 3425364 3425365 BPUM_0485 BPUM_0486     FALSE 0.187 109.000 0.000 1.000 N NA
 3425365 3425366 BPUM_0486 BPUM_0487     TRUE 0.682 -49.000 0.000 1.000 N NA
 3425366 3425367 BPUM_0487 BPUM_0488     TRUE 0.887 18.000 0.000 NA Y NA
 3425372 3425373 BPUM_0493 BPUM_0494     FALSE 0.175 123.000 0.000 1.000 N NA
 3425374 3425375 BPUM_0495 BPUM_0496     FALSE 0.005 163.000 0.000 NA   NA
 3425375 3425376 BPUM_0496 BPUM_0497     FALSE 0.006 149.000 0.000 NA   NA
 3425377 3425378 BPUM_0498 BPUM_0499   azlC TRUE 0.892 -3.000 0.338 NA   NA
 3425381 3425382 BPUM_0502 BPUM_t0016     FALSE 0.007 136.000 0.000 NA   NA
 3425382 3425383 BPUM_t0016 BPUM_t0017     FALSE 0.054 12.000 0.000 NA   NA
 3425383 3425384 BPUM_t0017 BPUM_r0010     FALSE 0.003 183.000 0.000 NA   NA
 3425384 3425385 BPUM_r0010 BPUM_t0018     FALSE 0.011 93.000 0.000 NA   NA
 3425385 3425386 BPUM_t0018 BPUM_t0019     FALSE 0.054 15.000 0.000 NA   NA
 3425386 3425387 BPUM_t0019 BPUM_r0011     FALSE 0.010 99.000 0.000 NA   NA
 3425387 3425388 BPUM_r0011 BPUM_r0012     FALSE 0.019 62.000 0.000 NA   NA
 3425390 3425391 BPUM_0504 BPUM_0505 guaB dacA FALSE 0.491 161.000 0.267 1.000 N NA
 3425393 3425394 BPUM_0507 BPUM_0508 yaaD yaaE TRUE 0.976 21.000 0.488 NA Y NA
 3425394 3425395 BPUM_0508 BPUM_0509 yaaE serS FALSE 0.026 320.000 0.010 NA N NA
 3425395 3425396 BPUM_0509 BPUM_0510 serS   FALSE 0.027 103.000 0.000 1.000   NA
 3425396 3425397 BPUM_0510 BPUM_t0020     FALSE 0.008 129.000 0.000 NA   NA
 3425398 3425399 BPUM_0511 BPUM_0512 dck dgk TRUE 0.985 -3.000 0.255 0.001 Y NA
 3425399 3425400 BPUM_0512 BPUM_0513 dgk yaaH FALSE 0.384 80.000 0.058 1.000   NA
 3425400 3425401 BPUM_0513 BPUM_0514 yaaH yaaI TRUE 0.673 46.000 0.163 1.000   NA
 3425402 3425403 BPUM_0515 BPUM_nc0005 yaaJ scr FALSE 0.020 59.000 0.000 NA   NA
 3425403 3425404 BPUM_nc0005 BPUM_0516 scr dnaX FALSE 0.001 321.000 0.000 NA   NA
 3425404 3425405 BPUM_0516 BPUM_0517 dnaX yaaK TRUE 0.707 6.000 0.071 NA   NA
 3425405 3425406 BPUM_0517 BPUM_0518 yaaK recR TRUE 0.920 16.000 0.604 NA   NA
 3425406 3425407 BPUM_0518 BPUM_0519 recR yaaL TRUE 0.675 19.000 0.071 NA   NA
 3425407 3425408 BPUM_0519 BPUM_0520 yaaL bofA TRUE 0.734 67.000 0.417 NA   NA
 3425408 3425409 BPUM_0520 BPUM_r0013 bofA   FALSE 0.001 323.000 0.000 NA   NA
 3425409 3425410 BPUM_r0013 BPUM_r0014     FALSE 0.003 180.000 0.000 NA   NA
 3425410 3425411 BPUM_r0014 BPUM_r0015     FALSE 0.019 62.000 0.000 NA   NA
 3425411 3425412 BPUM_r0015 BPUM_t0021     FALSE 0.045 20.000 0.000 NA   NA
 3425412 3425413 BPUM_t0021 BPUM_t0022     FALSE 0.054 5.000 0.000 NA   NA
 3425413 3425414 BPUM_t0022 BPUM_0521   thiL FALSE 0.001 277.000 0.000 NA   NA
 3425414 3425415 BPUM_0521 BPUM_0522 thiL ydiB FALSE 0.512 23.000 0.034 NA   NA
 3425415 3425416 BPUM_0522 BPUM_0523 ydiB ydiC TRUE 0.879 -19.000 0.217 NA   NA
 3425416 3425417 BPUM_0523 BPUM_0524 ydiC rimI TRUE 0.846 -16.000 0.127 1.000   NA
 3425417 3425418 BPUM_0524 BPUM_0525 rimI gcp TRUE 0.802 -7.000 0.090 1.000   NA
 3425420 3425421 BPUM_0527 BPUM_0528 moaC rex TRUE 0.569 16.000 0.013 1.000   NA
 3425421 3425422 BPUM_0528 BPUM_0529 rex tatAY TRUE 0.748 28.000 0.167 1.000   NA
 3425422 3425423 BPUM_0529 BPUM_0530 tatAY tatCY TRUE 0.977 7.000 0.357 NA Y NA
 3425424 3425425 BPUM_0531 BPUM_0532   ydiK FALSE 0.020 57.000 0.000 NA   NA
 3425425 3425426 BPUM_0532 BPUM_0533 ydiK ydiL TRUE 0.913 -3.000 0.480 NA   NA
 3425427 3425428 BPUM_0534 BPUM_0535 groES groEL TRUE 0.975 56.000 0.674 0.005 Y NA
 3425428 3425429 BPUM_0535 BPUM_0536 groEL   FALSE 0.000 541.000 0.000 NA   NA
 3425430 3425431 BPUM_0537 BPUM_0538     FALSE 0.008 125.000 0.000 NA   NA
 3425432 3425433 BPUM_0539 BPUM_0540 ydjM ydjN FALSE 0.015 74.000 0.000 NA   NA
 3425434 3425435 BPUM_0541 BPUM_0542   cotA FALSE 0.002 288.000 0.000 1.000   NA
 3425435 3425436 BPUM_0542 BPUM_0543 cotA gabP TRUE 0.629 100.000 0.200 1.000 N NA
 3425437 3425438 BPUM_0544 BPUM_0545 yeaB yeaC FALSE 0.303 102.000 0.054 1.000   NA
 3425438 3425439 BPUM_0545 BPUM_0546 yeaC yeaD TRUE 0.934 -3.000 0.714 NA   NA
 3425439 3425440 BPUM_0546 BPUM_0547 yeaD yebA TRUE 0.925 10.000 0.642 NA   NA
 3425440 3425441 BPUM_0547 BPUM_0548 yebA guaA FALSE 0.039 187.000 0.007 NA   NA
 3425441 3425442 BPUM_0548 BPUM_0549 guaA yopK FALSE 0.001 388.000 0.000 1.000   NA
 3425444 3425445 BPUM_0551 BPUM_0552     FALSE 0.037 25.000 0.000 NA   NA
 3425445 3425446 BPUM_0552 BPUM_0553     FALSE 0.000 1350.000 0.000 NA   NA
 3425446 3425447 BPUM_0553 BPUM_0554   ydcQ FALSE 0.027 34.000 0.000 NA   NA
 3425447 3425448 BPUM_0554 BPUM_0555 ydcQ ydcR TRUE 0.673 74.000 0.286 1.000   NA
 3425448 3425449 BPUM_0555 BPUM_0556 ydcR   FALSE 0.001 256.000 0.000 NA   NA
 3425449 3425450 BPUM_0556 BPUM_0557   yddA FALSE 0.054 7.000 0.000 NA   NA
 3425450 3425451 BPUM_0557 BPUM_0558 yddA   FALSE 0.014 79.000 0.000 NA   NA
 3425451 3425452 BPUM_0558 BPUM_0559     FALSE 0.019 61.000 0.000 NA   NA
 3425454 3425455 BPUM_0561 BPUM_0562 ydiP   FALSE 0.016 72.000 0.000 NA   NA
 3425455 3425456 BPUM_0562 BPUM_0563     FALSE 0.066 -10.000 0.000 NA   NA
 3425456 3425457 BPUM_0563 BPUM_0564     FALSE 0.031 29.000 0.000 NA   NA
 3425457 3425458 BPUM_0564 BPUM_0565     TRUE 0.883 -3.000 0.308 NA   NA
 3425458 3425459 BPUM_0565 BPUM_0566     TRUE 0.902 -13.000 0.308 NA   NA
 3425459 3425460 BPUM_0566 BPUM_0567     TRUE 0.936 5.000 0.800 NA   NA
 3425460 3425461 BPUM_0567 BPUM_0568     TRUE 0.935 7.000 0.800 NA   NA
 3425461 3425462 BPUM_0568 BPUM_0569     FALSE 0.004 173.000 0.000 NA   NA
 3425462 3425463 BPUM_0569 BPUM_0570     FALSE 0.001 259.000 0.000 NA   NA
 3425463 3425464 BPUM_0570 BPUM_0571   yddB FALSE 0.072 -19.000 0.000 NA   NA
 3425464 3425465 BPUM_0571 BPUM_0572 yddB yddC TRUE 0.931 12.000 0.750 NA   NA
 3425465 3425466 BPUM_0572 BPUM_0573 yddC yddD TRUE 0.912 12.000 0.500 NA   NA
 3425466 3425467 BPUM_0573 BPUM_0574 yddD yddE FALSE 0.073 -22.000 0.000 NA   NA
 3425467 3425468 BPUM_0574 BPUM_0575 yddE yddG FALSE 0.000 771.000 0.000 NA   NA
 3425468 3425469 BPUM_0575 BPUM_0576 yddG yddH FALSE 0.057 -3.000 0.000 NA   NA
 3425469 3425470 BPUM_0576 BPUM_0577 yddH yddI FALSE 0.054 10.000 0.000 NA   NA
 3425470 3425471 BPUM_0577 BPUM_0578 yddI   FALSE 0.032 28.000 0.000 NA   NA
 3425471 3425472 BPUM_0578 BPUM_0579     FALSE 0.057 -3.000 0.000 NA   NA
 3425472 3425473 BPUM_0579 BPUM_0580   int FALSE 0.057 -3.000 0.000 NA   NA
 3425474 3425475 BPUM_0581 BPUM_0582     TRUE 0.595 1.000 0.000 1.000 N NA
 3425475 3425476 BPUM_0582 BPUM_0583   ybfP FALSE 0.007 564.000 0.000 1.000 N NA
 3425477 3425478 BPUM_0584 BPUM_0585 ydeE   TRUE 0.890 14.000 0.300 1.000   NA
 3425479 3425480 BPUM_0586 BPUM_0587     FALSE 0.054 5.000 0.000 NA   NA
 3425481 3425482 BPUM_0588 BPUM_0589     TRUE 0.954 -31.000 0.800 NA   NA
 3425484 3425485 BPUM_0591 BPUM_0592 lysR pbuG FALSE 0.001 362.000 0.000 1.000   NA
 3425485 3425486 BPUM_0592 BPUM_0593 pbuG yebC FALSE 0.000 382.000 0.000 NA   NA
 3425486 3425487 BPUM_0593 BPUM_0594 yebC yebE FALSE 0.007 135.000 0.000 NA   NA
 3425487 3425488 BPUM_0594 BPUM_0595 yebE yebG TRUE 0.868 -3.000 0.258 NA   NA
 3425488 3425489 BPUM_0595 BPUM_0596 yebG purE FALSE 0.000 351.000 0.000 NA   NA
 3425489 3425490 BPUM_0596 BPUM_0597 purE purK TRUE 0.973 -7.000 0.038 0.001 Y NA
 3425490 3425491 BPUM_0597 BPUM_0598 purK purB TRUE 0.948 -3.000 0.033 1.000 Y NA
 3425491 3425492 BPUM_0598 BPUM_0599 purB purC TRUE 0.857 73.000 0.072 1.000 Y NA
 3425492 3425493 BPUM_0599 BPUM_0600 purC purS TRUE 0.985 -7.000 0.460 1.000 Y NA
 3425493 3425494 BPUM_0600 BPUM_0601 purS purQ TRUE 0.992 -3.000 0.656 0.001 Y NA
 3425494 3425495 BPUM_0601 BPUM_0602 purQ purL TRUE 0.990 -16.000 0.346 0.001 Y NA
 3425495 3425496 BPUM_0602 BPUM_0603 purL purF TRUE 0.980 -24.000 0.223 1.000 Y NA
 3425496 3425497 BPUM_0603 BPUM_0604 purF purM TRUE 0.875 96.000 0.248 1.000 Y NA
 3425497 3425498 BPUM_0604 BPUM_0605 purM purN TRUE 0.984 -3.000 0.238 0.003 Y NA
 3425498 3425499 BPUM_0605 BPUM_0606 purN purH TRUE 0.972 16.000 0.225 1.000 Y NA
 3425499 3425500 BPUM_0606 BPUM_0607 purH purD TRUE 0.974 13.000 0.238 1.000 Y NA
 3425500 3425501 BPUM_0607 BPUM_0608 purD   FALSE 0.025 272.000 0.000 1.000 N NA
 3425501 3425502 BPUM_0608 BPUM_0609     FALSE 0.006 151.000 0.000 NA   NA
 3425502 3425503 BPUM_0609 BPUM_0610     FALSE 0.042 22.000 0.000 NA   NA
 3425505 3425506 BPUM_0612 BPUM_0613 yodT atoD TRUE 0.960 13.000 0.792 1.000 N NA
 3425506 3425507 BPUM_0613 BPUM_0614 atoD yodR TRUE 0.994 -24.000 0.760 0.001 Y NA
 3425507 3425508 BPUM_0614 BPUM_0615 yodR yodQ TRUE 0.940 15.000 0.419 1.000 N NA
 3425512 3425513 BPUM_0619 BPUM_0620 yerC   FALSE 0.019 60.000 0.000 NA   NA
 3425517 3425518 BPUM_0624 BPUM_0625 pcrB pcrA FALSE 0.472 58.000 0.054 1.000   NA
 3425518 3425519 BPUM_0625 BPUM_0626 pcrA ligA TRUE 0.938 45.000 0.103 0.012 Y NA
 3425519 3425520 BPUM_0626 BPUM_0627 ligA yerH FALSE 0.425 16.000 0.005 NA   NA
 3425520 3425521 BPUM_0627 BPUM_0628 yerH yfmI FALSE 0.010 101.000 0.000 NA   NA
 3425521 3425522 BPUM_0628 BPUM_0629 yfmI   FALSE 0.006 149.000 0.000 NA   NA
 3425522 3425523 BPUM_0629 BPUM_0630   pbpX TRUE 0.607 -3.000 0.000 1.000 N NA
 3425523 3425524 BPUM_0630 BPUM_0631 pbpX bacT FALSE 0.006 940.000 0.000 1.000 N NA
 3425524 3425525 BPUM_0631 BPUM_0632 bacT   TRUE 0.607 -3.000 0.000 1.000 N NA
 3425525 3425526 BPUM_0632 BPUM_0633     TRUE 0.591 15.000 0.000 1.000 N NA
 3425526 3425527 BPUM_0633 BPUM_0634     TRUE 0.836 28.000 0.333 1.000   NA
 3425527 3425528 BPUM_0634 BPUM_0635     TRUE 0.955 -13.000 0.800 1.000   NA
 3425528 3425529 BPUM_0635 BPUM_0636     FALSE 0.006 9127.000 0.000 1.000 N NA
 3425529 3425530 BPUM_0636 BPUM_0637     TRUE 0.951 -7.000 0.000 0.005 Y NA
 3425530 3425531 BPUM_0637 BPUM_0638     TRUE 0.943 1.000 0.000 0.004 Y NA
 3425531 3425532 BPUM_0638 BPUM_0639     TRUE 0.951 -7.000 0.000 0.004 Y NA
 3425532 3425533 BPUM_0639 BPUM_0640   yerI FALSE 0.063 -7.000 0.000 NA   NA
 3425534 3425535 BPUM_0641 BPUM_0642 phoB sapB FALSE 0.024 114.000 0.000 1.000   NA
 3425535 3425536 BPUM_0642 BPUM_0643 sapB opuE FALSE 0.216 164.000 0.091 1.000   NA
 3425537 3425538 BPUM_0644 BPUM_0645 gatC gatA TRUE 0.991 15.000 0.643 0.001 Y NA
 3425538 3425539 BPUM_0645 BPUM_0646 gatA gatB TRUE 0.989 14.000 0.492 0.001 Y NA
 3425543 3425544 BPUM_0650 BPUM_0651 yerQ yefA TRUE 0.816 58.000 0.299 1.000 N NA
 3425544 3425545 BPUM_0651 BPUM_0652 yefA   FALSE 0.001 550.000 0.000 1.000   NA
 3425545 3425546 BPUM_0652 BPUM_0653     FALSE 0.479 -7.000 0.006 NA   NA
 3425546 3425547 BPUM_0653 BPUM_0654     TRUE 0.924 -18.000 0.423 NA   NA
 3425547 3425548 BPUM_0654 BPUM_0655     TRUE 0.927 -3.000 0.609 NA   NA
 3425550 3425551 BPUM_0657 BPUM_0658 yfjN   FALSE 0.009 108.000 0.000 NA   NA
 3425553 3425554 BPUM_0660 BPUM_0661 malP glvA TRUE 0.964 27.000 0.309 1.000 Y NA
 3425556 3425557 BPUM_0663 BPUM_0664     FALSE 0.560 66.000 0.056 NA N NA
 3425566 3425567 BPUM_0674 BPUM_0675 yetN   FALSE 0.002 199.000 0.000 NA   NA
 3425568 3425569 BPUM_0676 BPUM_0677 yfnH yfnG TRUE 0.989 -28.000 0.624 1.000 Y NA
 3425569 3425570 BPUM_0677 BPUM_0678 yfnG yfnF FALSE 0.525 13.000 0.021 NA   NA
 3425570 3425571 BPUM_0678 BPUM_0679 yfnF yfnE TRUE 0.666 -3.000 0.052 NA   NA
 3425571 3425572 BPUM_0679 BPUM_0680 yfnE yfnD TRUE 0.655 1.000 0.052 NA   NA
 3425577 3425578 BPUM_0685 BPUM_0686 yocL yocM FALSE 0.001 292.000 0.000 NA   NA
 3425579 3425580 BPUM_0687 BPUM_0688 yozN yocN TRUE 0.918 7.000 0.556 NA   NA
 3425581 3425582 BPUM_0689 BPUM_0690 yfnA   FALSE 0.009 181.000 0.000 1.000   NA
 3425583 3425584 BPUM_0691 BPUM_0692 yfmR yfmP FALSE 0.091 161.000 0.006 1.000   NA
 3425584 3425585 BPUM_0692 BPUM_0693 yfmP yfmO TRUE 0.778 57.000 0.205 1.000 N NA
 3425588 3425589 BPUM_0696 BPUM_0697 yfmJ yfmB FALSE 0.249 109.000 0.059 NA   NA
 3425590 3425591 BPUM_0698 BPUM_0699     FALSE 0.000 970.000 0.000 NA   NA
 3425591 3425592 BPUM_0699 BPUM_0700     FALSE 0.003 281.000 0.000 1.000   NA
 3425592 3425593 BPUM_0700 BPUM_0701     FALSE 0.027 34.000 0.000 NA   NA
 3425593 3425594 BPUM_0701 BPUM_0702     FALSE 0.054 5.000 0.000 NA   NA
 3425594 3425595 BPUM_0702 BPUM_0703   ribD2 FALSE 0.001 277.000 0.000 NA   NA
 3425595 3425596 BPUM_0703 BPUM_0704 ribD2   FALSE 0.009 113.000 0.000 NA   NA
 3425596 3425597 BPUM_0704 BPUM_0706     FALSE 0.078 -671.000 0.000 NA   NA
 3425597 3425598 BPUM_0706 BPUM_0707   citS FALSE 0.025 107.000 0.000 1.000   NA
 3425598 3425599 BPUM_0707 BPUM_0708 citS citT TRUE 0.988 1.000 0.833 1.000 Y NA
 3425599 3425600 BPUM_0708 BPUM_0709 citT yflP TRUE 0.933 4.000 0.611 1.000   NA
 3425600 3425601 BPUM_0709 BPUM_0710 yflP citM FALSE 0.195 192.000 0.176 1.000   NA
 3425601 3425602 BPUM_0710 BPUM_0711 citM   FALSE 0.009 181.000 0.000 1.000   NA
 3425604 3425605 BPUM_0713 BPUM_0714 padR nos FALSE 0.144 105.000 0.000 NA N NA
 3425608 3425609 BPUM_0717 BPUM_0718   yflI TRUE 0.641 135.000 0.750 NA   NA
 3425609 3425610 BPUM_0718 BPUM_0719 yflI yflG FALSE 0.138 124.000 0.020 NA   NA
 3425614 3425615 BPUM_0723 BPUM_0724 yjgB yflE FALSE 0.010 101.000 0.000 NA   NA
 3425616 3425617 BPUM_0725 BPUM_0726     TRUE 0.861 32.000 0.286 1.000 N NA
 3425617 3425618 BPUM_0726 BPUM_0727     FALSE 0.001 243.000 0.000 NA   NA
 3425618 3425619 BPUM_0727 BPUM_0728   treP FALSE 0.005 164.000 0.000 NA   NA
 3425619 3425620 BPUM_0728 BPUM_0729 treP treA TRUE 0.954 16.000 0.070 1.000 Y NA
 3425620 3425621 BPUM_0729 BPUM_0730 treA treR TRUE 0.919 20.000 0.336 1.000 N NA
 3425621 3425622 BPUM_0730 BPUM_0731 treR   FALSE 0.006 145.000 0.000 NA   NA
 3425625 3425626 BPUM_0734 BPUM_0735 yfkK yflA FALSE 0.265 78.000 0.036 NA   NA
 3425627 3425628 BPUM_0736 BPUM_0737 yfkJ yfkI FALSE 0.399 21.000 0.008 NA   NA
 3425628 3425629 BPUM_0737 BPUM_0738 yfkI yfkH TRUE 0.781 19.000 0.159 NA   NA
 3425631 3425632 BPUM_0740 BPUM_0741   yfkE FALSE 0.529 65.000 0.024 1.000 N NA
 3425632 3425633 BPUM_0741 BPUM_0742 yfkE yfkD TRUE 0.612 68.000 0.212 NA   NA
 3425634 3425635 BPUM_0743 BPUM_0744 yeeI   FALSE 0.008 132.000 0.000 NA   NA
 3425635 3425636 BPUM_0744 BPUM_0745     FALSE 0.010 103.000 0.000 NA   NA
 3425636 3425637 BPUM_0745 BPUM_0746   yfkA TRUE 0.589 8.000 0.016 1.000   NA
 3425638 3425639 BPUM_0747 BPUM_0748 yfjT yfjS FALSE 0.272 103.000 0.062 NA   NA
 3425640 3425641 BPUM_0749 BPUM_0750   corA FALSE 0.028 33.000 0.000 NA   NA
 3425641 3425642 BPUM_0750 BPUM_0751 corA   FALSE 0.007 134.000 0.000 NA   NA
 3425643 3425644 BPUM_0752 BPUM_0753 alkA trmA TRUE 0.598 99.000 0.164 1.000 N NA
 3425644 3425645 BPUM_0753 BPUM_0754 trmA   FALSE 0.163 132.000 0.000 1.000 N NA
 3425645 3425646 BPUM_0754 BPUM_0755     TRUE 0.796 58.000 0.244 1.000 N NA
 3425646 3425647 BPUM_0755 BPUM_0756     FALSE 0.015 73.000 0.000 NA   NA
 3425647 3425648 BPUM_0756 BPUM_0757     FALSE 0.066 -10.000 0.000 NA   NA
 3425648 3425649 BPUM_0757 BPUM_0758     FALSE 0.019 140.000 0.000 1.000   NA
 3425649 3425650 BPUM_0758 BPUM_0759   ybcL TRUE 0.929 27.000 0.667 1.000 N NA
 3425650 3425651 BPUM_0759 BPUM_0760 ybcL   FALSE 0.001 256.000 0.000 NA   NA
 3425651 3425652 BPUM_0760 BPUM_0761   thrZ FALSE 0.000 602.000 0.000 NA   NA
 3425652 3425653 BPUM_0761 BPUM_0762 thrZ   FALSE 0.025 39.000 0.000 NA   NA
 3425653 3425654 BPUM_0762 BPUM_0763     FALSE 0.071 -18.000 0.000 NA   NA
 3425654 3425655 BPUM_0763 BPUM_0764     FALSE 0.034 27.000 0.000 NA   NA
 3425655 3425656 BPUM_0764 BPUM_0765     FALSE 0.001 323.000 0.000 NA   NA
 3425658 3425659 BPUM_0767 BPUM_0768     FALSE 0.078 -1250.000 0.000 NA   NA
 3425659 3425660 BPUM_0768 BPUM_0769     FALSE 0.042 22.000 0.000 NA   NA
 3425660 3425661 BPUM_0769 BPUM_0770     FALSE 0.063 -7.000 0.000 NA   NA
 3425662 3425663 BPUM_0771 BPUM_0772     TRUE 0.991 1.000 0.846 0.080 Y NA
 3425663 3425664 BPUM_0772 BPUM_0773     TRUE 0.758 81.000 0.333 1.000 N NA
 3425665 3425666 BPUM_0774 BPUM_0775 vanZ yfjM FALSE 0.057 -3.000 0.000 NA   NA
 3425666 3425667 BPUM_0775 BPUM_0776 yfjM yesY FALSE 0.006 151.000 0.000 NA   NA
 3425667 3425668 BPUM_0776 BPUM_0777 yesY ycgT FALSE 0.121 154.000 0.000 1.000 N NA
 3425669 3425670 BPUM_0778 BPUM_0779 yfjF   FALSE 0.039 24.000 0.000 NA   NA
 3425671 3425672 BPUM_0780 BPUM_0781     TRUE 0.890 -3.000 0.333 NA   NA
 3425672 3425673 BPUM_0781 BPUM_0782     FALSE 0.002 196.000 0.000 NA   NA
 3425673 3425674 BPUM_0782 BPUM_0783     FALSE 0.012 89.000 0.000 NA   NA
 3425674 3425675 BPUM_0783 BPUM_0784   yfiT FALSE 0.057 -3.000 0.000 NA   NA
 3425675 3425676 BPUM_0784 BPUM_0785 yfiT   FALSE 0.054 13.000 0.000 NA   NA
 3425678 3425679 BPUM_0787 BPUM_0788     FALSE 0.011 92.000 0.000 NA   NA
 3425679 3425680 BPUM_0788 BPUM_0789     FALSE 0.001 337.000 0.000 NA   NA
 3425686 3425687 BPUM_0795 BPUM_0796 recX yfhH TRUE 0.632 4.000 0.045 NA   NA
 3425688 3425689 BPUM_0797 BPUM_0798   sspK TRUE 0.727 26.000 0.160 NA   NA
 3425690 3425691 BPUM_0799 BPUM_0800 yfhJ csbB FALSE 0.001 291.000 0.000 NA   NA
 3425691 3425692 BPUM_0800 BPUM_0801 csbB yfhO FALSE 0.012 88.000 0.000 NA   NA
 3425695 3425696 BPUM_0804 BPUM_0805 yvrL oxdC TRUE 0.790 69.000 0.667 NA   NA
 3425696 3425697 BPUM_0805 BPUM_0806 oxdC   TRUE 0.707 95.000 0.667 NA   NA
 3425698 3425699 BPUM_0807 BPUM_0808 yvrI yvrH TRUE 0.903 -46.000 0.267 NA   NA
 3425703 3425704 BPUM_0812 BPUM_0813 fabL sspE TRUE 0.722 61.000 0.282 1.000   NA
 3425705 3425706 BPUM_0814 BPUM_0815     FALSE 0.007 140.000 0.000 NA   NA
 3425707 3425708 BPUM_0816 BPUM_0817     FALSE 0.183 148.000 0.058 NA   NA
 3425708 3425709 BPUM_0817 BPUM_0818     FALSE 0.477 95.000 0.077 NA N NA
 3425709 3425710 BPUM_0818 BPUM_0819   appDC FALSE 0.304 113.000 0.005 1.000 N NA
 3425710 3425711 BPUM_0819 BPUM_0820 appDC appFC TRUE 0.984 -31.000 0.133 0.003 Y NA
 3425711 3425712 BPUM_0820 BPUM_0821 appFC   TRUE 0.973 -25.000 0.125 1.000 Y NA
 3425712 3425713 BPUM_0821 BPUM_0822   appBC TRUE 0.965 17.000 0.067 0.044 Y NA
 3425713 3425714 BPUM_0822 BPUM_0823 appBC appCC TRUE 0.989 18.000 0.779 0.044 Y NA
 3425715 3425716 BPUM_0824 BPUM_0825 ygaE gsaB FALSE 0.060 247.000 0.102 NA   NA
 3425717 3425718 BPUM_0826 BPUM_0827 ygaF perR FALSE 0.202 159.000 0.005 1.000 N NA
 3425720 3425721 BPUM_0829 BPUM_r0016 ygxA   FALSE 0.001 322.000 0.000 NA   NA
 3425721 3425722 BPUM_r0016 BPUM_r0017     FALSE 0.003 180.000 0.000 NA   NA
 3425722 3425723 BPUM_r0017 BPUM_r0018     FALSE 0.009 112.000 0.000 NA   NA
 3425723 3425724 BPUM_r0018 BPUM_t0023     FALSE 0.054 10.000 0.000 NA   NA
 3425724 3425725 BPUM_t0023 BPUM_t0024     FALSE 0.054 5.000 0.000 NA   NA
 3425725 3425726 BPUM_t0024 BPUM_t0025     FALSE 0.049 18.000 0.000 NA   NA
 3425726 3425727 BPUM_t0025 BPUM_t0026     FALSE 0.028 33.000 0.000 NA   NA
 3425727 3425728 BPUM_t0026 BPUM_t0027     FALSE 0.052 16.000 0.000 NA   NA
 3425728 3425729 BPUM_t0027 BPUM_t0028     FALSE 0.040 23.000 0.000 NA   NA
 3425729 3425730 BPUM_t0028 BPUM_t0029     FALSE 0.047 19.000 0.000 NA   NA
 3425730 3425731 BPUM_t0029 BPUM_t0030     FALSE 0.054 7.000 0.000 NA   NA
 3425731 3425732 BPUM_t0030 BPUM_t0031     FALSE 0.052 16.000 0.000 NA   NA
 3425732 3425733 BPUM_t0031 BPUM_t0032     FALSE 0.054 10.000 0.000 NA   NA
 3425733 3425734 BPUM_t0032 BPUM_t0033     FALSE 0.030 31.000 0.000 NA   NA
 3425734 3425735 BPUM_t0033 BPUM_t0034     FALSE 0.054 10.000 0.000 NA   NA
 3425735 3425736 BPUM_t0034 BPUM_t0035     FALSE 0.054 8.000 0.000 NA   NA
 3425736 3425737 BPUM_t0035 BPUM_t0036     FALSE 0.054 6.000 0.000 NA   NA
 3425737 3425738 BPUM_t0036 BPUM_t0037     FALSE 0.054 14.000 0.000 NA   NA
 3425738 3425739 BPUM_t0037 BPUM_t0038     FALSE 0.026 37.000 0.000 NA   NA
 3425739 3425740 BPUM_t0038 BPUM_0830     FALSE 0.002 226.000 0.000 NA   NA
 3425740 3425741 BPUM_0830 BPUM_0831     FALSE 0.001 410.000 0.000 1.000   NA
 3425741 3425742 BPUM_0831 BPUM_0832     FALSE 0.006 145.000 0.000 NA   NA
 3425742 3425743 BPUM_0832 BPUM_0833     FALSE 0.016 71.000 0.000 NA   NA
 3425744 3425745 BPUM_0834 BPUM_0835     FALSE 0.021 56.000 0.000 NA   NA
 3425745 3425746 BPUM_0835 BPUM_0836     FALSE 0.008 123.000 0.000 NA   NA
 3425746 3425747 BPUM_0836 BPUM_0837     FALSE 0.054 12.000 0.000 NA   NA
 3425747 3425748 BPUM_0837 BPUM_0838     FALSE 0.047 19.000 0.000 NA   NA
 3425749 3425750 BPUM_0839 BPUM_0840 yfnI sipP FALSE 0.361 52.000 0.000 1.000 N NA
 3425750 3425751 BPUM_0840 BPUM_0841 sipP   FALSE 0.470 27.000 0.000 1.000 N NA
 3425752 3425753 BPUM_0842 BPUM_0843 yrpD cspR FALSE 0.008 126.000 0.000 NA   NA
 3425753 3425754 BPUM_0843 BPUM_0844 cspR yhbB FALSE 0.549 44.000 0.097 NA   NA
 3425754 3425755 BPUM_0844 BPUM_0845 yhbB yhbA TRUE 0.599 62.000 0.174 NA   NA
 3425757 3425758 BPUM_t0039 BPUM_0847     FALSE 0.008 128.000 0.000 NA   NA
 3425758 3425759 BPUM_0847 BPUM_0848     FALSE 0.013 81.000 0.000 NA   NA
 3425759 3425760 BPUM_0848 BPUM_0849     TRUE 0.948 -3.000 1.000 NA   NA
 3425760 3425761 BPUM_0849 BPUM_0850     TRUE 0.958 -16.000 1.000 NA   NA
 3425761 3425762 BPUM_0850 BPUM_0851     TRUE 0.923 -22.000 0.400 NA   NA
 3425762 3425763 BPUM_0851 BPUM_0852     TRUE 0.622 95.000 0.400 NA   NA
 3425764 3425765 BPUM_0853 BPUM_0854     FALSE 0.001 250.000 0.000 NA   NA
 3425767 3425768 BPUM_0856 BPUM_0857 prkA yhbH TRUE 0.611 141.000 0.683 NA   NA
 3425768 3425769 BPUM_0857 BPUM_0858 yhbH yhbJ FALSE 0.000 364.000 0.000 NA   NA
 3425769 3425770 BPUM_0858 BPUM_0859 yhbJ yhcA TRUE 0.636 40.000 0.118 1.000   NA
 3425770 3425771 BPUM_0859 BPUM_0860 yhcA yhcB TRUE 0.827 18.000 0.176 1.000   NA
 3425771 3425772 BPUM_0860 BPUM_0861 yhcB yhcC TRUE 0.884 14.000 0.333 NA   NA
 3425773 3425774 BPUM_0862 BPUM_0863 cspB yhcK FALSE 0.077 179.000 0.000 1.000 N NA
 3425777 3425778 BPUM_0866 BPUM_0867 yhcN yhcP TRUE 0.573 136.000 0.500 NA   NA
 3425780 3425781 BPUM_0869 BPUM_0870   yhcR TRUE 0.716 87.000 0.286 1.000 N NA
 3425781 3425782 BPUM_0870 BPUM_0871 yhcR yhcS2 TRUE 0.851 47.000 0.429 NA N NA
 3425786 3425787 BPUM_0875 BPUM_0876 yhcW yhcX TRUE 0.629 16.000 0.028 1.000   NA
 3425787 3425788 BPUM_0876 BPUM_0877 yhcX   FALSE 0.055 0.000 0.000 NA   NA
 3425788 3425789 BPUM_0877 BPUM_0878     FALSE 0.012 88.000 0.000 NA   NA
 3425789 3425790 BPUM_0878 BPUM_0879     FALSE 0.028 33.000 0.000 NA   NA
 3425790 3425791 BPUM_0879 BPUM_0880   bioA FALSE 0.021 245.000 0.000 NA N NA
 3425791 3425792 BPUM_0880 BPUM_0881 bioA glpP FALSE 0.206 172.000 0.033 1.000 N NA
 3425792 3425793 BPUM_0881 BPUM_0882 glpP glpF FALSE 0.158 214.000 0.083 1.000 N NA
 3425793 3425794 BPUM_0882 BPUM_0883 glpF glpK TRUE 0.824 16.000 0.057 1.000 N NA
 3425794 3425795 BPUM_0883 BPUM_0884 glpK glpD TRUE 0.758 140.000 0.010 0.001 Y NA
 3425795 3425796 BPUM_0884 BPUM_0885 glpD   FALSE 0.041 334.000 0.049 1.000 N NA
 3425796 3425797 BPUM_0885 BPUM_0886   yhcY FALSE 0.346 134.000 0.037 1.000 N NA
 3425797 3425798 BPUM_0886 BPUM_0887 yhcY yhcZ TRUE 0.989 -3.000 0.536 0.018 Y NA
 3425803 3425804 BPUM_0892 BPUM_0893 katX2 yhdE FALSE 0.078 161.000 0.000 NA N NA
 3425805 3425806 BPUM_0894 BPUM_0895 hmp spoVR FALSE 0.017 68.000 0.000 NA   NA
 3425808 3425809 BPUM_0897 BPUM_0898 lytE orfX FALSE 0.025 107.000 0.000 1.000   NA
 3425809 3425810 BPUM_0898 BPUM_0899 orfX   TRUE 0.839 48.000 0.333 0.041   NA
 3425811 3425812 BPUM_0900 BPUM_0901 yhdK yhdL TRUE 0.906 -12.000 0.333 NA   NA
 3425812 3425813 BPUM_0901 BPUM_0902 yhdL sigM TRUE 0.944 -10.000 0.733 NA   NA
 3425815 3425816 BPUM_0904 BPUM_0905 yhdP cueR FALSE 0.536 59.000 0.118 NA   NA
 3425817 3425818 BPUM_0906 BPUM_0907 yhdT   FALSE 0.464 90.000 0.167 NA   NA
 3425819 3425820 BPUM_0908 BPUM_0909 ccrB1 ccrB2 TRUE 0.971 19.000 0.160 0.093 Y NA
 3425820 3425821 BPUM_0909 BPUM_0910 ccrB2 ugpQ TRUE 0.778 6.000 0.023 1.000 N NA
 3425821 3425822 BPUM_0910 BPUM_0911 ugpQ   FALSE 0.027 34.000 0.000 NA   NA
 3425823 3425824 BPUM_0912 BPUM_0913 yhdX yhdY FALSE 0.120 165.000 0.047 NA   NA
 3425824 3425825 BPUM_0913 BPUM_0914 yhdY yhdZ TRUE 0.814 15.000 0.047 1.000 N NA
 3425829 3425830 BPUM_0918 BPUM_0919 yheI yheH TRUE 0.992 -3.000 0.844 0.005 Y NA
 3425831 3425832 BPUM_0920 BPUM_0921 yheG sspB FALSE 0.002 287.000 0.000 1.000   NA
 3425832 3425833 BPUM_0921 BPUM_0922 sspB msmX FALSE 0.004 233.000 0.000 1.000   NA
 3425833 3425834 BPUM_0922 BPUM_0923 msmX   FALSE 0.473 140.000 0.321 NA   NA
 3425834 3425835 BPUM_0923 BPUM_0924     TRUE 0.660 21.000 0.071 NA   NA
 3425835 3425836 BPUM_0924 BPUM_0925   yheD FALSE 0.005 154.000 0.000 NA   NA
 3425836 3425837 BPUM_0925 BPUM_0926 yheD yheC TRUE 0.883 -43.000 0.208 NA   NA
 3425838 3425839 BPUM_0927 BPUM_0928 yheB yheA FALSE 0.519 122.000 0.321 NA   NA
 3425839 3425840 BPUM_0928 BPUM_0929 yheA yhaX FALSE 0.008 449.000 0.036 NA   NA
 3425840 3425841 BPUM_0929 BPUM_0930 yhaX hemZ FALSE 0.453 114.000 0.091 0.074   NA
 3425841 3425842 BPUM_0930 BPUM_0931 hemZ   FALSE 0.413 76.000 0.020 NA N NA
 3425842 3425843 BPUM_0931 BPUM_0932     FALSE 0.070 167.000 0.000 NA N NA
 3425845 3425846 BPUM_0934 BPUM_0935 yhaO yhaN TRUE 0.934 17.000 0.330 0.002   NA
 3425846 3425847 BPUM_0935 BPUM_0936 yhaN yhaM TRUE 0.722 63.000 0.291 1.000   NA
 3425847 3425848 BPUM_0936 BPUM_0937 yhaM yhaL FALSE 0.290 117.000 0.087 NA   NA
 3425850 3425851 BPUM_0939 BPUM_0940     FALSE 0.006 146.000 0.000 NA   NA
 3425852 3425853 BPUM_0941 BPUM_0942     FALSE 0.316 122.000 0.111 NA   NA
 3425855 3425856 BPUM_0944 BPUM_0945 hpr yhaH FALSE 0.003 188.000 0.000 NA   NA
 3425858 3425859 BPUM_0947 BPUM_0948 yhaG serC FALSE 0.136 126.000 0.020 NA   NA
 3425859 3425860 BPUM_0948 BPUM_0949 serC hit FALSE 0.215 160.000 0.014 1.000 N NA
 3425861 3425862 BPUM_0950 BPUM_0951   ecsA FALSE 0.001 332.000 0.000 NA   NA
 3425862 3425863 BPUM_0951 BPUM_0952 ecsA ecsB TRUE 0.923 -7.000 0.271 NA N NA
 3425863 3425864 BPUM_0952 BPUM_0953 ecsB ecsC TRUE 0.722 54.000 0.292 NA   NA
 3425868 3425869 BPUM_0957 BPUM_0958 pbpF hemE FALSE 0.329 125.000 0.020 1.000 N NA
 3425869 3425870 BPUM_0958 BPUM_0959 hemE hemH TRUE 0.931 33.000 0.131 1.000 Y NA
 3425870 3425871 BPUM_0959 BPUM_0960 hemH hemY TRUE 0.940 23.000 0.069 1.000 Y NA
 3425871 3425872 BPUM_0960 BPUM_0961 hemY yhgD FALSE 0.258 175.000 0.075 1.000 N NA
 3425872 3425873 BPUM_0961 BPUM_0962 yhgD yhgE TRUE 0.769 65.000 0.500 NA   NA
 3425873 3425874 BPUM_0962 BPUM_0963 yhgE yhfE FALSE 0.007 144.000 0.000 NA   NA
 3425874 3425875 BPUM_0963 BPUM_0964 yhfE   FALSE 0.020 57.000 0.000 NA   NA
 3425876 3425877 BPUM_0965 BPUM_0966 gltT yhfH FALSE 0.001 340.000 0.000 NA   NA
 3425878 3425879 BPUM_0967 BPUM_0968 yhfI yhfJ TRUE 0.856 3.000 0.200 1.000   NA
 3425879 3425880 BPUM_0968 BPUM_0969 yhfJ lcfA1 FALSE 0.226 173.000 0.049 1.000 N NA
 3425883 3425884 BPUM_0972 BPUM_0973 aprE1 yhfR FALSE 0.010 389.000 0.000 1.000 N NA
 3425884 3425885 BPUM_0973 BPUM_0974 yhfR   FALSE 0.052 62.000 0.000 1.000   NA
 3425885 3425886 BPUM_0974 BPUM_0975   yhfW FALSE 0.390 92.000 0.031 0.092   NA
 3425889 3425890 BPUM_0978 BPUM_0979 comK   FALSE 0.080 160.000 0.000 NA N NA
 3425890 3425891 BPUM_0979 BPUM_0980     FALSE 0.001 313.000 0.000 NA   NA
 3425893 3425894 BPUM_0982 BPUM_0983   yrdF FALSE 0.239 66.000 0.000 NA N NA
 3425894 3425895 BPUM_0983 BPUM_0984 yrdF yclN FALSE 0.071 166.000 0.000 NA N NA
 3425895 3425896 BPUM_0984 BPUM_0985 yclN yclO TRUE 0.992 -7.000 0.870 0.043 Y NA
 3425896 3425897 BPUM_0985 BPUM_0986 yclO yclP TRUE 0.990 -9.000 0.870 1.000 Y NA
 3425897 3425898 BPUM_0986 BPUM_0987 yclP yclQ TRUE 0.960 23.000 0.196 1.000 Y NA
 3425898 3425899 BPUM_0987 BPUM_0988 yclQ   FALSE 0.108 141.000 0.000 NA N NA
 3425903 3425904 BPUM_0992 BPUM_0993   addB FALSE 0.004 1264.000 0.000 NA N NA
 3425904 3425905 BPUM_0993 BPUM_0994 addB addA TRUE 0.984 -22.000 0.408 NA Y NA
 3425905 3425906 BPUM_0994 BPUM_0995 addA sbcD TRUE 0.917 27.000 0.041 1.000 Y NA
 3425906 3425907 BPUM_0995 BPUM_0996 sbcD sbcC TRUE 0.974 -3.000 0.669 0.002 N NA
 3425907 3425908 BPUM_0996 BPUM_0997 sbcC yisB FALSE 0.382 20.000 0.005 NA   NA
 3425909 3425910 BPUM_0998 BPUM_0999 gerPF gerPE TRUE 0.794 14.000 0.148 NA   NA
 3425910 3425911 BPUM_0999 BPUM_1000 gerPE gerPD FALSE 0.055 0.000 0.000 NA   NA
 3425911 3425912 BPUM_1000 BPUM_1001 gerPD gerPC FALSE 0.057 -3.000 0.000 NA   NA
 3425912 3425913 BPUM_1001 BPUM_1002 gerPC gerPB TRUE 0.900 26.000 0.769 NA   NA
 3425913 3425914 BPUM_1002 BPUM_1003 gerPB gerPA TRUE 0.942 15.000 0.889 NA   NA
 3425914 3425915 BPUM_1003 BPUM_1004 gerPA yisI FALSE 0.259 128.000 0.074 NA   NA
 3425915 3425916 BPUM_1004 BPUM_1005 yisI cotH FALSE 0.354 123.000 0.143 NA   NA
 3425916 3425917 BPUM_1005 BPUM_1006 cotH   FALSE 0.015 75.000 0.000 NA   NA
 3425918 3425919 BPUM_1007 BPUM_1008 yisK yisL FALSE 0.417 93.000 0.141 NA   NA
 3425921 3425922 BPUM_1010 BPUM_1011 asnO   FALSE 0.319 148.000 0.045 1.000 N NA
 3425922 3425923 BPUM_1011 BPUM_1012   yisP FALSE 0.006 1465.000 0.000 1.000 N NA
 3425925 3425926 BPUM_1014 BPUM_1015 yisR   TRUE 0.795 15.000 0.034 1.000 N NA
 3425926 3425927 BPUM_1015 BPUM_1016     FALSE 0.018 64.000 0.000 NA   NA
 3425927 3425928 BPUM_1016 BPUM_1017     FALSE 0.031 29.000 0.000 NA   NA
 3425930 3425931 BPUM_1019 BPUM_1020     TRUE 0.987 -13.000 0.289 0.017 Y NA
 3425931 3425932 BPUM_1020 BPUM_1021     TRUE 0.926 -3.000 0.279 1.000 N NA
 3425932 3425933 BPUM_1021 BPUM_1022     TRUE 0.926 -3.000 0.279 1.000 N NA
 3425933 3425934 BPUM_1022 BPUM_1023   iucD TRUE 0.962 -25.000 0.500 1.000 N NA
 3425934 3425935 BPUM_1023 BPUM_1024 iucD   TRUE 0.954 14.000 0.062 1.000 Y NA
 3425936 3425937 BPUM_1025 BPUM_1026 yitH   FALSE 0.012 168.000 0.000 1.000   NA
 3425937 3425938 BPUM_1026 BPUM_1027   yitJ TRUE 0.977 -16.000 0.045 0.001 Y NA
 3425938 3425939 BPUM_1027 BPUM_1028 yitJ yitK FALSE 0.001 279.000 0.000 NA   NA
 3425940 3425941 BPUM_1029 BPUM_1030 yitL yufN FALSE 0.252 75.000 0.009 1.000   NA
 3425941 3425942 BPUM_1030 BPUM_1031 yufN   TRUE 0.950 -3.000 0.857 1.000   NA
 3425944 3425945 BPUM_1033 BPUM_1034 yitT ipi FALSE 0.286 111.000 0.079 NA   NA
 3425946 3425947 BPUM_1035 BPUM_1036     TRUE 0.941 -3.000 0.826 NA   NA
 3425947 3425948 BPUM_1036 BPUM_1037   yitU TRUE 0.575 89.000 0.286 NA   NA
 3425949 3425950 BPUM_1038 BPUM_1039 yitV yitW FALSE 0.062 46.000 0.000 1.000   NA
 3425950 3425951 BPUM_1039 BPUM_1040 yitW yitY FALSE 0.023 123.000 0.000 1.000   NA
 3425951 3425952 BPUM_1040 BPUM_1041 yitY yitZ TRUE 0.722 -3.000 0.052 1.000   NA
 3425952 3425953 BPUM_1041 BPUM_1042 yitZ argC FALSE 0.131 132.000 0.003 1.000   NA
 3425953 3425954 BPUM_1042 BPUM_1043 argC argJ TRUE 0.981 21.000 0.303 0.003 Y NA
 3425954 3425955 BPUM_1043 BPUM_1044 argJ argB TRUE 0.971 15.000 0.067 0.003 Y NA
 3425955 3425956 BPUM_1044 BPUM_1045 argB argD TRUE 0.979 -3.000 0.322 1.000 Y NA
 3425956 3425957 BPUM_1045 BPUM_1046 argD carA TRUE 0.922 70.000 0.286 1.000 Y NA
 3425957 3425958 BPUM_1046 BPUM_1047 carA carB1 TRUE 0.993 -7.000 0.714 0.001 Y NA
 3425958 3425959 BPUM_1047 BPUM_1048 carB1 argF TRUE 0.946 -3.000 0.027 1.000 Y NA
 3425959 3425960 BPUM_1048 BPUM_1049 argF yjzC FALSE 0.134 103.000 0.011 NA   NA
 3425960 3425961 BPUM_1049 BPUM_1050 yjzC yvqJ1 FALSE 0.004 171.000 0.000 NA   NA
 3425963 3425964 BPUM_1052 BPUM_1053 yjaU yjaV FALSE 0.196 76.000 0.014 NA   NA
 3425964 3425965 BPUM_1053 BPUM_1054 yjaV med FALSE 0.011 91.000 0.000 NA   NA
 3425965 3425966 BPUM_1054 BPUM_1055 med comZ TRUE 0.894 11.000 0.389 NA   NA
 3425968 3425969 BPUM_1057 BPUM_1058 fabHA fabF TRUE 0.967 22.000 0.076 0.001 Y NA
 3425969 3425970 BPUM_1058 BPUM_1059 fabF yjaZ FALSE 0.453 78.000 0.039 NA N NA
 3425970 3425971 BPUM_1059 BPUM_1060 yjaZ appD FALSE 0.346 162.000 0.143 NA N NA
 3425971 3425972 BPUM_1060 BPUM_1061 appD appF TRUE 0.991 -3.000 0.615 0.002 Y NA
 3425972 3425973 BPUM_1061 BPUM_1062 appF appA TRUE 0.926 84.000 0.500 1.000 Y NA
 3425973 3425974 BPUM_1062 BPUM_1063 appA appB TRUE 0.643 229.000 0.417 0.042 Y NA
 3425974 3425975 BPUM_1063 BPUM_1064 appB appC TRUE 0.966 34.000 0.300 0.042 Y NA
 3425975 3425976 BPUM_1064 BPUM_1065 appC   FALSE 0.008 118.000 0.000 NA   NA
 3425976 3425977 BPUM_1065 BPUM_1066   yfiS FALSE 0.003 190.000 0.000 NA   NA
 3425977 3425978 BPUM_1066 BPUM_1067 yfiS yjbA FALSE 0.015 73.000 0.000 NA   NA
 3425979 3425980 BPUM_1068 BPUM_1069 trpS   FALSE 0.001 317.000 0.000 NA   NA
 3425981 3425982 BPUM_1070 BPUM_1071   oppB TRUE 0.694 110.000 0.000 0.042 Y NA
 3425982 3425983 BPUM_1071 BPUM_1072 oppB oppC TRUE 0.984 -3.000 0.299 0.042 Y NA
 3425983 3425984 BPUM_1072 BPUM_1073 oppC oppD TRUE 0.984 16.000 0.595 1.000 Y NA
 3425984 3425985 BPUM_1073 BPUM_1074 oppD oppF TRUE 0.986 -7.000 0.238 0.003 Y NA
 3425985 3425986 BPUM_1074 BPUM_1075 oppF   FALSE 0.009 106.000 0.000 NA   NA
 3425986 3425987 BPUM_1075 BPUM_1076   yjbC FALSE 0.007 137.000 0.000 NA   NA
 3425987 3425988 BPUM_1076 BPUM_1077 yjbC spx FALSE 0.007 194.000 0.000 1.000   NA
 3425990 3425991 BPUM_1079 BPUM_1080 mecA   TRUE 0.708 86.000 0.314 NA N NA
 3425991 3425992 BPUM_1080 BPUM_1081   yjbF FALSE 0.274 164.000 0.189 NA   NA
 3425992 3425993 BPUM_1081 BPUM_1082 yjbF yjbG TRUE 0.921 -19.000 0.398 NA   NA
 3425994 3425995 BPUM_1083 BPUM_1084   yjbH FALSE 0.001 298.000 0.000 NA   NA
 3425995 3425996 BPUM_1084 BPUM_1085 yjbH yjbI TRUE 0.823 -3.000 0.138 1.000   NA
 3425996 3425997 BPUM_1085 BPUM_1086 yjbI yjbJ FALSE 0.019 277.000 0.024 NA   NA
 3425997 3425998 BPUM_1086 BPUM_1087 yjbJ yjbK TRUE 0.802 19.000 0.188 NA   NA
 3425999 3426000 BPUM_1088 BPUM_1089 yjbL yjbM TRUE 0.762 34.000 0.283 NA   NA
 3426000 3426001 BPUM_1089 BPUM_1090 yjbM ppnK TRUE 0.827 66.000 0.725 1.000   NA
 3426001 3426002 BPUM_1090 BPUM_1091 ppnK rluA2 TRUE 0.877 45.000 0.480 1.000 N NA
 3426004 3426005 BPUM_1093 BPUM_1094 yjbQ tenA FALSE 0.030 248.000 0.000 1.000 N NA
 3426005 3426006 BPUM_1094 BPUM_1095 tenA tenI TRUE 0.680 -40.000 0.000 1.000 N NA
 3426006 3426007 BPUM_1095 BPUM_1096 tenI goxB TRUE 0.925 -16.000 0.194 1.000 N NA
 3426007 3426008 BPUM_1096 BPUM_1097 goxB thiS TRUE 0.919 -3.000 0.239 1.000 N NA
 3426008 3426009 BPUM_1097 BPUM_1098 thiS thiG TRUE 0.951 5.000 0.054 1.000 Y NA
 3426009 3426010 BPUM_1098 BPUM_1099 thiG thiF TRUE 0.957 -3.000 0.009 0.032 Y NA
 3426010 3426011 BPUM_1099 BPUM_1100 thiF thiDA TRUE 0.957 17.000 0.098 1.000 Y NA
 3426011 3426012 BPUM_1100 BPUM_1101 thiDA fabI FALSE 0.309 151.000 0.047 1.000 N NA
 3426012 3426013 BPUM_1101 BPUM_1102 fabI yjbX FALSE 0.343 115.000 0.129 NA   NA
 3426014 3426015 BPUM_1103 BPUM_1104 cotZ   FALSE 0.050 17.000 0.000 NA   NA
 3426015 3426016 BPUM_1104 BPUM_1105   cotY FALSE 0.032 28.000 0.000 NA   NA
 3426016 3426017 BPUM_1105 BPUM_1106 cotY cotX TRUE 0.584 147.000 0.667 NA   NA
 3426017 3426018 BPUM_1106 BPUM_1107 cotX cotW TRUE 0.680 89.000 0.500 NA   NA
 3426018 3426019 BPUM_1107 BPUM_1108 cotW cotV TRUE 0.936 -3.000 0.750 NA   NA
 3426020 3426021 BPUM_1109 BPUM_1110 yjcA   FALSE 0.028 33.000 0.000 NA   NA
 3426021 3426022 BPUM_1110 BPUM_1111     FALSE 0.014 78.000 0.000 NA   NA
 3426022 3426023 BPUM_1111 BPUM_1112   yosA FALSE 0.012 85.000 0.000 NA   NA
 3426023 3426024 BPUM_1112 BPUM_1113 yosA spoVIF FALSE 0.354 139.000 0.172 NA   NA
 3426027 3426028 BPUM_1116 BPUM_1117 yjcF ligT TRUE 0.862 7.000 0.213 1.000   NA
 3426028 3426029 BPUM_1117 BPUM_1118 ligT yjcH TRUE 0.804 53.000 0.287 NA N NA
 3426030 3426031 BPUM_1119 BPUM_1120 yjcI yjcJ TRUE 0.991 -3.000 0.600 0.001 Y NA
 3426031 3426032 BPUM_1120 BPUM_t0040 yjcJ   FALSE 0.008 129.000 0.000 NA   NA
 3426032 3426033 BPUM_t0040 BPUM_1121     FALSE 0.001 340.000 0.000 NA   NA
 3426035 3426036 BPUM_1123 BPUM_1124     FALSE 0.001 235.000 0.000 NA   NA
 3426037 3426038 BPUM_1125 BPUM_1126 accA1   TRUE 0.599 33.000 0.007 1.000 N NA
 3426038 3426039 BPUM_1126 BPUM_1127     FALSE 0.000 882.000 0.000 NA   NA
 3426039 3426040 BPUM_1127 BPUM_1128     FALSE 0.000 624.000 0.000 NA   NA
 3426040 3426041 BPUM_1128 BPUM_1129     FALSE 0.008 126.000 0.000 NA   NA
 3426042 3426043 BPUM_1130 BPUM_1131   cat FALSE 0.012 88.000 0.000 NA   NA
 3426043 3426044 BPUM_1131 BPUM_1132 cat rapH FALSE 0.006 201.000 0.000 1.000   NA
 3426044 3426045 BPUM_1132 BPUM_1133 rapH phrH FALSE 0.066 -10.000 0.000 NA   NA
 3426045 3426046 BPUM_1133 BPUM_1134 phrH   FALSE 0.009 110.000 0.000 NA   NA
 3426047 3426048 BPUM_1135 BPUM_1136   racX TRUE 0.703 24.000 0.019 1.000 N NA
 3426048 3426049 BPUM_1136 BPUM_1137 racX   FALSE 0.199 103.000 0.000 1.000 N NA
 3426049 3426050 BPUM_1137 BPUM_1138     TRUE 0.591 10.000 0.000 1.000 N NA
 3426051 3426052 BPUM_1139 BPUM_1140     FALSE 0.065 42.000 0.000 1.000   NA
 3426052 3426053 BPUM_1140 BPUM_1141   rapA1 FALSE 0.022 130.000 0.000 1.000   NA
 3426053 3426054 BPUM_1141 BPUM_1142 rapA1 phrA1 FALSE 0.066 -10.000 0.000 NA   NA
 3426054 3426055 BPUM_1142 BPUM_1143 phrA1   FALSE 0.001 242.000 0.000 NA   NA
 3426055 3426056 BPUM_1143 BPUM_1144   yosT FALSE 0.004 175.000 0.000 NA   NA
 3426056 3426057 BPUM_1144 BPUM_1145 yosT   FALSE 0.010 100.000 0.000 NA   NA
 3426057 3426058 BPUM_1145 BPUM_1146   alr2 FALSE 0.004 165.000 0.000 NA   NA
 3426060 3426061 BPUM_1148 BPUM_1149   hag2 FALSE 0.009 397.000 0.000 1.000 N NA
 3426061 3426062 BPUM_1149 BPUM_1150 hag2 hag3 FALSE 0.234 271.000 0.000 0.002 Y NA
 3426062 3426063 BPUM_1150 BPUM_1151 hag3 hag4 FALSE 0.414 199.000 0.000 0.002 Y NA
 3426063 3426064 BPUM_1151 BPUM_1152 hag4 hag5 FALSE 0.205 287.000 0.000 0.002 Y NA
 3426071 3426072 BPUM_1159 BPUM_1160 spoIISB spoIISA TRUE 0.930 -25.000 0.444 NA   NA
 3426072 3426073 BPUM_1160 BPUM_1161 spoIISA pit FALSE 0.312 137.000 0.133 NA   NA
 3426073 3426074 BPUM_1161 BPUM_1162 pit ykaA TRUE 0.953 16.000 0.100 NA Y NA
 3426074 3426075 BPUM_1162 BPUM_1163 ykaA   FALSE 0.002 207.000 0.000 NA   NA
 3426076 3426077 BPUM_1164 BPUM_1165 ggt   FALSE 0.026 35.000 0.000 NA   NA
 3426077 3426078 BPUM_1165 BPUM_1166     FALSE 0.012 86.000 0.000 NA   NA
 3426078 3426079 BPUM_1166 BPUM_1167     TRUE 0.855 55.000 0.000 0.016 Y NA
 3426079 3426080 BPUM_1167 BPUM_1168     TRUE 0.965 20.000 0.083 0.016 Y NA
 3426080 3426081 BPUM_1168 BPUM_1169     FALSE 0.019 62.000 0.000 NA   NA
 3426081 3426082 BPUM_1169 BPUM_1170   gutB FALSE 0.057 -3.000 0.000 NA   NA
 3426082 3426083 BPUM_1170 BPUM_1171 gutB   FALSE 0.071 183.000 0.000 1.000 N NA
 3426083 3426084 BPUM_1171 BPUM_1172     TRUE 0.991 17.000 0.769 0.002 Y NA
 3426084 3426085 BPUM_1172 BPUM_1173     TRUE 0.959 18.000 0.051 0.071 Y NA
 3426085 3426086 BPUM_1173 BPUM_1174     TRUE 0.942 13.000 0.024 1.000 Y NA
 3426086 3426087 BPUM_1174 BPUM_1175     FALSE 0.483 26.000 0.000 1.000 N NA
 3426087 3426088 BPUM_1175 BPUM_1176   ywfD TRUE 0.948 -10.000 0.000 0.039 Y NA
 3426088 3426089 BPUM_1176 BPUM_1177 ywfD   FALSE 0.182 112.000 0.000 1.000 N NA
 3426089 3426090 BPUM_1177 BPUM_1178     FALSE 0.037 80.000 0.000 1.000   NA
 3426094 3426095 BPUM_1182 BPUM_1183   proC FALSE 0.054 4.000 0.000 NA   NA
 3426095 3426096 BPUM_1183 BPUM_1184 proC dppA FALSE 0.527 184.000 0.100 NA Y NA
 3426096 3426097 BPUM_1184 BPUM_1185 dppA dppB TRUE 0.978 19.000 0.500 NA Y NA
 3426097 3426098 BPUM_1185 BPUM_1186 dppB dppC TRUE 0.992 -3.000 0.909 0.041 Y NA
 3426098 3426099 BPUM_1186 BPUM_1187 dppC dppD TRUE 0.990 8.000 0.833 0.089 Y NA
 3426099 3426100 BPUM_1187 BPUM_1188 dppD dppE TRUE 0.988 0.000 0.833 1.000 Y NA
 3426100 3426101 BPUM_1188 BPUM_1189 dppE ykfA TRUE 0.645 112.000 0.333 NA N NA
 3426101 3426102 BPUM_1189 BPUM_1190 ykfA ykfB TRUE 0.822 -3.000 0.064 NA N NA
 3426102 3426103 BPUM_1190 BPUM_1191 ykfB ykfC TRUE 0.956 0.000 0.101 NA Y NA
 3426103 3426104 BPUM_1191 BPUM_1192 ykfC   TRUE 0.943 -10.000 0.400 NA N NA
 3426106 3426107 BPUM_1194 BPUM_1195     FALSE 0.131 115.000 0.000 NA N NA
 3426109 3426110 BPUM_1197 BPUM_1198     FALSE 0.015 73.000 0.000 NA   NA
 3426110 3426111 BPUM_1198 BPUM_1199     FALSE 0.047 19.000 0.000 NA   NA
 3426112 3426113 BPUM_1200 BPUM_1201 ada   FALSE 0.004 172.000 0.000 NA   NA
 3426114 3426115 BPUM_1202 BPUM_1203   ykkD TRUE 0.988 -3.000 0.560 0.075 Y NA
 3426117 3426118 BPUM_1205 BPUM_1206 purU   FALSE 0.004 171.000 0.000 NA   NA
 3426118 3426119 BPUM_1206 BPUM_1207   proB FALSE 0.077 -37.000 0.000 NA   NA
 3426119 3426120 BPUM_1207 BPUM_1208 proB proA1 TRUE 0.984 13.000 0.281 0.004 Y NA
 3426120 3426121 BPUM_1208 BPUM_1209 proA1 rapA2 FALSE 0.023 123.000 0.000 1.000   NA
 3426121 3426122 BPUM_1209 BPUM_1210 rapA2 phrA2 FALSE 0.066 -10.000 0.000 NA   NA
 3426122 3426123 BPUM_1210 BPUM_1211 phrA2 ohrA FALSE 0.000 351.000 0.000 NA   NA
 3426126 3426127 BPUM_1214 BPUM_1215 guaD metE FALSE 0.394 139.000 0.004 0.021 N NA
 3426129 3426130 BPUM_1217 BPUM_1218 ispA   FALSE 0.005 159.000 0.000 NA   NA
 3426131 3426132 BPUM_1219 BPUM_1220 ykoG ykoH TRUE 0.970 4.000 0.100 0.089 Y NA
 3426132 3426133 BPUM_1220 BPUM_1221 ykoH ykoI FALSE 0.047 67.000 0.000 1.000   NA
 3426133 3426134 BPUM_1221 BPUM_1222 ykoI ykoJ FALSE 0.273 94.000 0.000 0.002   NA
 3426134 3426135 BPUM_1222 BPUM_1223 ykoJ ykzD FALSE 0.001 286.000 0.000 NA   NA
 3426137 3426138 BPUM_1225 BPUM_1226 ykoK   FALSE 0.412 102.000 0.154 NA   NA
 3426140 3426141 BPUM_1228 BPUM_1229     FALSE 0.014 77.000 0.000 NA   NA
 3426143 3426144 BPUM_1231 BPUM_1232 ykzB   FALSE 0.025 40.000 0.000 NA   NA
 3426144 3426145 BPUM_1232 BPUM_1233   ykoM FALSE 0.064 359.000 0.400 NA   NA
 3426147 3426148 BPUM_1235 BPUM_1236 ykoX ykoY FALSE 0.001 283.000 0.000 NA   NA
 3426148 3426149 BPUM_1236 BPUM_1237 ykoY sigI FALSE 0.042 216.000 0.000 1.000 N NA
 3426149 3426150 BPUM_1237 BPUM_1238 sigI rsgI TRUE 0.927 -3.000 0.605 NA   NA
 3426151 3426152 BPUM_1239 BPUM_1240 sspD   FALSE 0.282 123.000 0.083 NA   NA
 3426153 3426154 BPUM_1241 BPUM_1242 htpX ykrM FALSE 0.280 144.000 0.019 1.000 N NA
 3426154 3426155 BPUM_1242 BPUM_1243 ykrM   FALSE 0.188 98.000 0.027 NA   NA
 3426155 3426156 BPUM_1243 BPUM_1244     FALSE 0.054 7.000 0.000 NA   NA
 3426156 3426157 BPUM_1244 BPUM_1245     TRUE 0.891 -7.000 0.300 NA   NA
 3426159 3426160 BPUM_1247 BPUM_1248 kinE ogt TRUE 0.836 2.000 0.061 1.000 N NA
 3426161 3426162 BPUM_1249 BPUM_1250   mtnK TRUE 0.787 7.000 0.104 1.000   NA
 3426163 3426164 BPUM_1251 BPUM_1252 mtnE mtnW FALSE 0.111 219.000 0.043 1.000 N NA
 3426164 3426165 BPUM_1252 BPUM_1253 mtnW mtnX TRUE 0.958 1.000 0.304 0.001 N NA
 3426165 3426166 BPUM_1253 BPUM_1254 mtnX mtnY TRUE 0.942 -36.000 0.253 1.000 N NA
 3426166 3426167 BPUM_1254 BPUM_1255 mtnY mtnZ TRUE 0.760 17.000 0.087 1.000   NA
 3426167 3426168 BPUM_1255 BPUM_1256 mtnZ spo0E FALSE 0.001 302.000 0.000 NA   NA
 3426171 3426172 BPUM_1259 BPUM_1260 motB motA TRUE 0.979 -7.000 0.257 1.000 Y NA
 3426172 3426173 BPUM_1260 BPUM_1261 motA clpE FALSE 0.021 375.000 0.010 1.000 N NA
 3426174 3426175 BPUM_1262 BPUM_1263 ykvI   FALSE 0.001 276.000 0.000 NA   NA
 3426175 3426176 BPUM_1263 BPUM_1264   queD TRUE 0.681 1.000 0.041 1.000   NA
 3426176 3426177 BPUM_1264 BPUM_1265 queD queE TRUE 0.938 -7.000 0.307 1.000 N NA
 3426177 3426178 BPUM_1265 BPUM_1266 queE queF TRUE 0.777 16.000 0.101 1.000   NA
 3426178 3426179 BPUM_1266 BPUM_1267 queF   FALSE 0.002 225.000 0.000 NA   NA
 3426179 3426180 BPUM_1267 BPUM_1268     FALSE 0.024 42.000 0.000 NA   NA
 3426181 3426182 BPUM_1269 BPUM_1270     FALSE 0.006 147.000 0.000 NA   NA
 3426183 3426184 BPUM_1271 BPUM_1272   ykvT FALSE 0.001 308.000 0.000 NA   NA
 3426184 3426185 BPUM_1272 BPUM_1273 ykvT   FALSE 0.087 312.000 0.308 1.000   NA
 3426185 3426186 BPUM_1273 BPUM_1274   spoIVH TRUE 0.666 55.000 0.174 1.000   NA
 3426186 3426187 BPUM_1274 BPUM_1275 spoIVH ykvW FALSE 0.019 294.000 0.000 1.000 N NA
 3426187 3426188 BPUM_1275 BPUM_1276 ykvW ykvY FALSE 0.355 105.000 0.018 1.000 N NA
 3426188 3426189 BPUM_1276 BPUM_1277 ykvY   FALSE 0.020 291.000 0.000 1.000 N NA
 3426189 3426190 BPUM_1277 BPUM_1278   glcT TRUE 0.833 18.000 0.095 0.079   NA
 3426190 3426191 BPUM_1278 BPUM_1279 glcT ptsG FALSE 0.103 203.000 0.071 1.000   NA
 3426191 3426192 BPUM_1279 BPUM_1280 ptsG ptsH TRUE 0.849 94.000 0.054 0.014 Y NA
 3426192 3426193 BPUM_1280 BPUM_1281 ptsH ptsI TRUE 0.976 0.000 0.132 0.014 Y NA
 3426193 3426194 BPUM_1281 BPUM_1282 ptsI splA FALSE 0.466 113.000 0.235 NA   NA
 3426194 3426195 BPUM_1282 BPUM_1283 splA splB FALSE 0.306 83.000 0.055 NA   NA
 3426195 3426196 BPUM_1283 BPUM_1284 splB mcpC FALSE 0.352 118.000 0.027 1.000 N NA
 3426196 3426197 BPUM_1284 BPUM_1285 mcpC   FALSE 0.508 75.000 0.035 1.000 N NA
 3426197 3426198 BPUM_1285 BPUM_1286   ykwC TRUE 0.950 14.000 0.050 1.000 Y NA
 3426199 3426200 BPUM_1287 BPUM_1288   ykwD FALSE 0.009 107.000 0.000 NA   NA
 3426201 3426202 BPUM_1289 BPUM_1290   kinA FALSE 0.118 156.000 0.000 1.000 N NA
 3426206 3426207 BPUM_1294 BPUM_1295   yxiO FALSE 0.278 126.000 0.006 0.041   NA
 3426207 3426208 BPUM_1295 BPUM_1296 yxiO cheV FALSE 0.275 74.000 0.015 1.000   NA
 3426209 3426210 BPUM_1297 BPUM_1298 ykyB   FALSE 0.000 501.000 0.000 NA   NA
 3426212 3426213 BPUM_1300 BPUM_1301 ykuC ykuD FALSE 0.266 155.000 0.114 1.000   NA
 3426213 3426214 BPUM_1301 BPUM_1302 ykuD ykuE FALSE 0.261 157.000 0.114 1.000   NA
 3426215 3426216 BPUM_1303 BPUM_1304 ykuF ykuI FALSE 0.530 65.000 0.043 NA N NA
 3426216 3426217 BPUM_1304 BPUM_1305 ykuI   FALSE 0.014 293.000 0.000 NA N NA
 3426217 3426218 BPUM_1305 BPUM_1306   ykuJ FALSE 0.003 184.000 0.000 NA   NA
 3426218 3426219 BPUM_1306 BPUM_1307 ykuJ ykuK FALSE 0.193 127.000 0.044 NA   NA
 3426219 3426220 BPUM_1307 BPUM_1308 ykuK ykzF FALSE 0.315 150.000 0.176 NA   NA
 3426220 3426221 BPUM_1308 BPUM_1309 ykzF ykuL FALSE 0.264 148.000 0.120 NA   NA
 3426221 3426222 BPUM_1309 BPUM_1310 ykuL ccpC FALSE 0.497 96.000 0.214 NA   NA
 3426222 3426223 BPUM_1310 BPUM_1311 ccpC   FALSE 0.012 87.000 0.000 NA   NA
 3426223 3426224 BPUM_1311 BPUM_1312     FALSE 0.003 187.000 0.000 NA   NA
 3426224 3426225 BPUM_1312 BPUM_1313     TRUE 0.823 -10.000 0.143 NA   NA
 3426225 3426226 BPUM_1313 BPUM_1314     FALSE 0.050 17.000 0.000 NA   NA
 3426226 3426227 BPUM_1314 BPUM_1315   dapD FALSE 0.185 110.000 0.000 1.000 N NA
 3426227 3426228 BPUM_1315 BPUM_1316 dapD ykuR TRUE 0.685 81.000 0.372 1.000   NA
 3426228 3426229 BPUM_1316 BPUM_1317 ykuR ykuS FALSE 0.524 51.000 0.091 NA   NA
 3426231 3426232 BPUM_1319 BPUM_1320 ykuU ykuV TRUE 0.844 83.000 0.008 0.002 Y NA
 3426232 3426233 BPUM_1320 BPUM_1321 ykuV rok FALSE 0.000 471.000 0.000 NA   NA
 3426235 3426236 BPUM_1323 BPUM_1324 mobA moeB TRUE 0.921 30.000 0.009 0.031 Y NA
 3426236 3426237 BPUM_1324 BPUM_1325 moeB moeA TRUE 0.989 10.000 1.000 1.000 Y NA
 3426237 3426238 BPUM_1325 BPUM_1326 moeA mobB TRUE 0.981 -18.000 0.100 0.003 Y NA
 3426238 3426239 BPUM_1326 BPUM_1327 mobB moaE TRUE 0.968 -3.000 0.040 0.003 Y NA
 3426239 3426240 BPUM_1327 BPUM_1328 moaE moaD TRUE 0.991 -7.000 0.501 0.003 Y NA
 3426242 3426243 BPUM_1330 BPUM_1331 yknW yknX TRUE 0.931 10.000 0.727 NA   NA
 3426243 3426244 BPUM_1331 BPUM_1332 yknX yknY TRUE 0.963 -3.000 0.818 1.000 N NA
 3426244 3426245 BPUM_1332 BPUM_1333 yknY yknZ TRUE 0.991 -13.000 0.909 1.000 Y NA
 3426245 3426246 BPUM_1333 BPUM_1334 yknZ fruR FALSE 0.015 322.000 0.000 1.000 N NA
 3426246 3426247 BPUM_1334 BPUM_1335 fruR fruK TRUE 0.987 -3.000 0.721 1.000 Y NA
 3426247 3426248 BPUM_1335 BPUM_1336 fruK fruA TRUE 0.987 14.000 0.816 1.000 Y NA
 3426248 3426249 BPUM_1336 BPUM_1337 fruA sipT FALSE 0.251 179.000 0.030 0.074 N NA
 3426251 3426252 BPUM_1339 BPUM_1340 ykpA   FALSE 0.037 25.000 0.000 NA   NA
 3426253 3426254 BPUM_1341 BPUM_1342 ampS ykpC FALSE 0.359 107.000 0.129 NA   NA
 3426254 3426255 BPUM_1342 BPUM_1343 ykpC mreBH FALSE 0.475 75.000 0.129 NA   NA
 3426256 3426257 BPUM_1344 BPUM_1345 abh kinC TRUE 0.699 92.000 0.333 NA N NA
 3426257 3426258 BPUM_1345 BPUM_1346 kinC   TRUE 0.831 5.000 0.080 NA N NA
 3426258 3426259 BPUM_1346 BPUM_1347   ktrC TRUE 0.892 38.000 0.061 NA Y NA
 3426259 3426260 BPUM_1347 BPUM_1348 ktrC adeC FALSE 0.054 263.000 0.013 1.000 N NA
 3426261 3426262 BPUM_1349 BPUM_1350 ykqC ykzG TRUE 0.920 6.000 0.576 NA   NA
 3426264 3426265 BPUM_1352 BPUM_1353 defB   FALSE 0.009 113.000 0.000 NA   NA
 3426266 3426267 BPUM_1354 BPUM_1355 ykyA pdhA FALSE 0.000 411.000 0.000 NA   NA
 3426267 3426268 BPUM_1355 BPUM_1356 pdhA pdhB TRUE 0.989 4.000 0.484 0.002 Y NA
 3426268 3426269 BPUM_1356 BPUM_1357 pdhB pdhC TRUE 0.947 108.000 0.883 0.070 Y NA
 3426269 3426270 BPUM_1357 BPUM_1358 pdhC pdhD TRUE 0.989 5.000 0.948 1.000 Y NA
 3426276 3426277 BPUM_1364 BPUM_1365   suhB FALSE 0.007 134.000 0.000 NA   NA
 3426278 3426279 BPUM_1366 BPUM_1367 ylaE ylaF FALSE 0.001 274.000 0.000 NA   NA
 3426280 3426281 BPUM_1368 BPUM_1369 typA ylaH FALSE 0.343 55.000 0.032 NA   NA
 3426282 3426283 BPUM_1370 BPUM_1371 ylaI ylaJ FALSE 0.334 102.000 0.096 NA   NA
 3426286 3426287 BPUM_1374 BPUM_1375 gls ylaN FALSE 0.343 123.000 0.133 NA   NA
 3426287 3426288 BPUM_1375 BPUM_1376 ylaN ftsW FALSE 0.197 207.000 0.300 NA   NA
 3426288 3426289 BPUM_1376 BPUM_1377 ftsW pycA FALSE 0.504 81.000 0.046 1.000 N NA
 3426289 3426290 BPUM_1377 BPUM_1378 pycA phrB FALSE 0.283 133.000 0.008 1.000 N NA
 3426292 3426293 BPUM_1380 BPUM_1381 ctaB ctaC FALSE 0.122 279.000 0.084 0.073 N NA
 3426293 3426294 BPUM_1381 BPUM_1382 ctaC ctaD TRUE 0.885 172.000 0.755 0.002 Y NA
 3426294 3426295 BPUM_1382 BPUM_1383 ctaD ctaE TRUE 0.993 0.000 0.925 0.002 Y NA
 3426295 3426296 BPUM_1383 BPUM_1384 ctaE ctaF TRUE 0.993 3.000 0.950 0.002 Y NA
 3426296 3426297 BPUM_1384 BPUM_1385 ctaF ctaG TRUE 0.876 31.000 0.707 NA   NA
 3426299 3426300 BPUM_1387 BPUM_1388 ylbB ylbC FALSE 0.371 125.000 0.155 NA   NA
 3426300 3426301 BPUM_1388 BPUM_1389 ylbC ylbD FALSE 0.504 109.000 0.276 NA   NA
 3426301 3426302 BPUM_1389 BPUM_1390 ylbD ylbE TRUE 0.929 20.000 0.852 NA   NA
 3426302 3426303 BPUM_1390 BPUM_1391 ylbE   TRUE 0.720 73.000 0.440 NA   NA
 3426303 3426304 BPUM_1391 BPUM_1392   ylbF FALSE 0.527 58.000 0.110 NA   NA
 3426304 3426305 BPUM_1392 BPUM_1393 ylbF ylbG TRUE 0.761 67.000 0.500 NA   NA
 3426305 3426306 BPUM_1393 BPUM_1394 ylbG ylbH FALSE 0.020 311.000 0.048 NA   NA
 3426306 3426307 BPUM_1394 BPUM_1395 ylbH coaD TRUE 0.935 4.000 0.367 1.000 N NA
 3426309 3426310 BPUM_1397 BPUM_1398 ylbK ylbL TRUE 0.779 5.000 0.095 1.000   NA
 3426312 3426313 BPUM_1400 BPUM_1401 ylbN rpmF TRUE 0.900 22.000 0.599 NA   NA
 3426313 3426314 BPUM_1401 BPUM_1402 rpmF gerR FALSE 0.126 139.000 0.004 1.000   NA
 3426316 3426317 BPUM_1404 BPUM_1405 ylbQ yllA FALSE 0.380 65.000 0.053 NA   NA
 3426317 3426318 BPUM_1405 BPUM_1406 yllA mraZ FALSE 0.070 174.000 0.025 NA   NA
 3426318 3426319 BPUM_1406 BPUM_1407 mraZ mraW TRUE 0.791 67.000 0.635 NA   NA
 3426319 3426320 BPUM_1407 BPUM_1408 mraW ftsL TRUE 0.721 38.000 0.077 1.000 N NA
 3426320 3426321 BPUM_1408 BPUM_1409 ftsL ftsI TRUE 0.929 8.000 0.316 1.000 N NA
 3426321 3426322 BPUM_1409 BPUM_1410 ftsI spoVD TRUE 0.871 127.000 0.157 0.002 Y NA
 3426322 3426323 BPUM_1410 BPUM_1411 spoVD murE FALSE 0.525 207.000 0.181 1.000 Y NA
 3426323 3426324 BPUM_1411 BPUM_1412 murE mraY TRUE 0.765 136.000 0.025 0.005 Y NA
 3426324 3426325 BPUM_1412 BPUM_1413 mraY murD TRUE 0.990 1.000 0.647 0.005 Y NA
 3426325 3426326 BPUM_1413 BPUM_1414 murD spoVE TRUE 0.763 60.000 0.067 0.005 N NA
 3426326 3426327 BPUM_1414 BPUM_1415 spoVE murG FALSE 0.224 198.000 0.120 1.000 N NA
 3426327 3426328 BPUM_1415 BPUM_1416 murG murB TRUE 0.914 32.000 0.061 1.000 Y NA
 3426328 3426329 BPUM_1416 BPUM_1417 murB divIB TRUE 0.729 128.000 0.070 NA Y NA
 3426329 3426330 BPUM_1417 BPUM_1418 divIB ylxW FALSE 0.545 -3.000 0.022 NA   NA
 3426330 3426331 BPUM_1418 BPUM_1419 ylxW ylxX TRUE 0.911 21.000 0.667 NA   NA
 3426331 3426332 BPUM_1419 BPUM_1420 ylxX sbp TRUE 0.811 0.000 0.165 NA   NA
 3426332 3426333 BPUM_1420 BPUM_1421 sbp ftsA FALSE 0.158 160.000 0.062 NA   NA
 3426333 3426334 BPUM_1421 BPUM_1422 ftsA ftsZ TRUE 0.964 34.000 0.460 1.000 Y NA
 3426334 3426335 BPUM_1422 BPUM_1423 ftsZ   FALSE 0.002 292.000 0.000 1.000   NA
 3426335 3426336 BPUM_1423 BPUM_1424     FALSE 0.030 30.000 0.000 NA   NA
 3426336 3426337 BPUM_1424 BPUM_1425   spoIIGA FALSE 0.054 13.000 0.000 NA   NA
 3426337 3426338 BPUM_1425 BPUM_1426 spoIIGA sigE TRUE 0.863 59.000 0.856 1.000   NA
 3426338 3426339 BPUM_1426 BPUM_1427 sigE sigG TRUE 0.917 143.000 0.602 0.009 Y NA
 3426339 3426340 BPUM_1427 BPUM_1428 sigG   FALSE 0.498 152.000 0.000 1.000 Y NA
 3426340 3426341 BPUM_1428 BPUM_1429     FALSE 0.031 245.000 0.000 1.000 N NA
 3426341 3426342 BPUM_1429 BPUM_1430     TRUE 0.779 13.000 0.042 NA N NA
 3426342 3426343 BPUM_1430 BPUM_1431     TRUE 0.723 19.000 0.028 NA N NA
 3426343 3426344 BPUM_1431 BPUM_1432     TRUE 0.992 14.000 1.000 0.011 Y NA
 3426344 3426345 BPUM_1432 BPUM_1433     TRUE 0.951 27.000 0.065 0.011 Y NA
 3426345 3426346 BPUM_1433 BPUM_1434   ylmA FALSE 0.172 127.000 0.000 1.000 N NA
 3426346 3426347 BPUM_1434 BPUM_1435 ylmA ylmC FALSE 0.013 80.000 0.000 NA   NA
 3426347 3426348 BPUM_1435 BPUM_1436 ylmC ylmD FALSE 0.036 237.000 0.039 NA   NA
 3426348 3426349 BPUM_1436 BPUM_1437 ylmD ylmE TRUE 0.684 7.000 0.061 NA   NA
 3426349 3426350 BPUM_1437 BPUM_1438 ylmE ylmF TRUE 0.830 2.000 0.194 NA   NA
 3426350 3426351 BPUM_1438 BPUM_1439 ylmF ylmG TRUE 0.804 7.000 0.158 NA   NA
 3426351 3426352 BPUM_1439 BPUM_1440 ylmG ylmH TRUE 0.628 54.000 0.138 1.000   NA
 3426352 3426353 BPUM_1440 BPUM_1441 ylmH divIVA TRUE 0.876 27.000 0.579 NA   NA
 3426353 3426354 BPUM_1441 BPUM_1442 divIVA ileS FALSE 0.020 351.000 0.012 NA N NA
 3426354 3426355 BPUM_1442 BPUM_1443 ileS ylyA FALSE 0.310 161.000 0.005 0.020 N NA
 3426355 3426356 BPUM_1443 BPUM_1444 ylyA lspA FALSE 0.565 95.000 0.120 1.000 N NA
 3426356 3426357 BPUM_1444 BPUM_1445 lspA ylyB TRUE 0.786 -3.000 0.022 1.000 N NA
 3426357 3426358 BPUM_1445 BPUM_1446 ylyB pyrR FALSE 0.229 172.000 0.048 1.000 N NA
 3426358 3426359 BPUM_1446 BPUM_1447 pyrR pyrP TRUE 0.718 155.000 0.140 1.000 Y NA
 3426359 3426360 BPUM_1447 BPUM_1448 pyrP pyrB TRUE 0.743 130.000 0.064 1.000 Y NA
 3426360 3426361 BPUM_1448 BPUM_1449 pyrB pyrC TRUE 0.986 -16.000 0.452 1.000 Y NA
 3426361 3426362 BPUM_1449 BPUM_1450 pyrC pyrAA TRUE 0.969 -3.000 0.155 1.000 Y NA
 3426362 3426363 BPUM_1450 BPUM_1451 pyrAA carB2 TRUE 0.983 -15.000 0.117 0.001 Y NA
 3426363 3426364 BPUM_1451 BPUM_1452 carB2 pyrK TRUE 0.890 -3.000 0.147 1.000 N NA
 3426364 3426365 BPUM_1452 BPUM_1453 pyrK pyrD TRUE 0.975 -6.000 0.592 0.001 N NA
 3426365 3426366 BPUM_1453 BPUM_1454 pyrD pyrF TRUE 0.985 -28.000 0.154 0.002 Y NA
 3426366 3426367 BPUM_1454 BPUM_1455 pyrF pyrE TRUE 0.964 8.000 0.133 1.000 Y NA
 3426367 3426368 BPUM_1455 BPUM_1456 pyrE cysH FALSE 0.007 478.000 0.000 1.000 N NA
 3426368 3426369 BPUM_1456 BPUM_1457 cysH cysP TRUE 0.757 14.000 0.011 1.000 N NA
 3426369 3426370 BPUM_1457 BPUM_1458 cysP sat TRUE 0.855 56.000 0.021 1.000 Y NA
 3426370 3426371 BPUM_1458 BPUM_1459 sat cysC TRUE 0.976 15.000 0.101 0.001 Y NA
 3426371 3426372 BPUM_1459 BPUM_1460 cysC cysG TRUE 0.713 30.000 0.049 1.000 N NA
 3426372 3426373 BPUM_1460 BPUM_1461 cysG cbiX TRUE 0.731 76.000 0.438 1.000   NA
 3426373 3426374 BPUM_1461 BPUM_1462 cbiX   TRUE 0.923 -19.000 0.333 1.000   NA
 3426376 3426377 BPUM_1464 BPUM_1465 yloB yloC FALSE 0.245 84.000 0.037 NA   NA
 3426377 3426378 BPUM_1465 BPUM_1466 yloC   FALSE 0.541 77.000 0.189 NA   NA
 3426378 3426379 BPUM_1466 BPUM_1467   gmk TRUE 0.789 10.000 0.143 NA   NA
 3426379 3426380 BPUM_1467 BPUM_1468 gmk rpoZ TRUE 0.945 4.000 0.471 1.000 N NA
 3426380 3426381 BPUM_1468 BPUM_1469 rpoZ coaBC TRUE 0.576 118.000 0.192 1.000 N NA
 3426381 3426382 BPUM_1469 BPUM_1470 coaBC priA TRUE 0.868 -3.000 0.099 1.000 N NA
 3426382 3426383 BPUM_1470 BPUM_1471 priA def TRUE 0.781 16.000 0.029 1.000 N NA
 3426383 3426384 BPUM_1471 BPUM_1472 def fmt TRUE 0.961 6.000 0.031 0.026 Y NA
 3426384 3426385 BPUM_1472 BPUM_1473 fmt rsmB TRUE 0.982 -13.000 0.305 1.000 Y NA
 3426385 3426386 BPUM_1473 BPUM_1474 rsmB   TRUE 0.814 4.000 0.135 1.000   NA
 3426386 3426387 BPUM_1474 BPUM_1475   prpC TRUE 0.789 4.000 0.105 1.000   NA
 3426387 3426388 BPUM_1475 BPUM_1476 prpC prkC TRUE 0.988 -6.000 0.704 1.000 Y NA
 3426388 3426389 BPUM_1476 BPUM_1477 prkC yloQ TRUE 0.853 13.000 0.196 1.000   NA
 3426389 3426390 BPUM_1477 BPUM_1478 yloQ rpe TRUE 0.862 4.000 0.213 1.000   NA
 3426390 3426391 BPUM_1478 BPUM_1479 rpe yloS TRUE 0.740 61.000 0.166 1.000 N NA
 3426391 3426392 BPUM_1479 BPUM_1480 yloS spoVM FALSE 0.263 72.000 0.028 NA   NA
 3426394 3426395 BPUM_1482 BPUM_1483     TRUE 0.915 16.000 0.567 NA   NA
 3426395 3426396 BPUM_1483 BPUM_1484   sdaAB FALSE 0.187 150.000 0.045 1.000   NA
 3426396 3426397 BPUM_1484 BPUM_1485 sdaAB sdaAA TRUE 0.981 21.000 0.265 0.001 Y NA
 3426397 3426398 BPUM_1485 BPUM_1486 sdaAA recG TRUE 0.941 -22.000 0.265 1.000 N NA
 3426398 3426399 BPUM_1486 BPUM_1487 recG ylpC FALSE 0.339 113.000 0.039 NA N NA
 3426399 3426400 BPUM_1487 BPUM_1488 ylpC plsX TRUE 0.688 16.000 0.005 NA N NA
 3426400 3426401 BPUM_1488 BPUM_1489 plsX fabD TRUE 0.973 16.000 0.106 0.005 Y NA
 3426401 3426402 BPUM_1489 BPUM_1490 fabD fabG1 TRUE 0.978 0.000 0.149 0.005 Y NA
 3426402 3426403 BPUM_1490 BPUM_1491 fabG1 acpP TRUE 0.893 82.000 0.100 0.005 Y NA
 3426403 3426404 BPUM_1491 BPUM_1492 acpP rnc FALSE 0.216 185.000 0.068 1.000 N NA
 3426404 3426405 BPUM_1492 BPUM_1493 rnc smc FALSE 0.531 106.000 0.120 1.000 N NA
 3426405 3426406 BPUM_1493 BPUM_1494 smc ftsY TRUE 0.907 23.000 0.165 0.011 N NA
 3426406 3426407 BPUM_1494 BPUM_1495 ftsY ylxM FALSE 0.275 143.000 0.081 1.000   NA
 3426407 3426408 BPUM_1495 BPUM_1496 ylxM ffh TRUE 0.826 14.000 0.151 1.000   NA
 3426408 3426409 BPUM_1496 BPUM_1497 ffh rpsP TRUE 0.699 106.000 0.361 1.000 N NA
 3426409 3426410 BPUM_1497 BPUM_1498 rpsP   TRUE 0.908 0.000 0.385 1.000   NA
 3426410 3426411 BPUM_1498 BPUM_1499     FALSE 0.267 104.000 0.061 NA   NA
 3426411 3426412 BPUM_1499 BPUM_1500   rimM TRUE 0.617 9.000 0.041 NA   NA
 3426412 3426413 BPUM_1500 BPUM_1501 rimM trmD TRUE 0.987 -3.000 0.672 1.000 Y NA
 3426413 3426414 BPUM_1501 BPUM_1502 trmD rplS TRUE 0.885 138.000 0.567 1.000 Y NA
 3426414 3426415 BPUM_1502 BPUM_1503 rplS ylqF FALSE 0.261 89.000 0.027 1.000   NA
 3426415 3426416 BPUM_1503 BPUM_1504 ylqF rnhB FALSE 0.541 76.000 0.148 1.000   NA
 3426416 3426417 BPUM_1504 BPUM_1505 rnhB   FALSE 0.365 28.000 0.016 NA   NA
 3426417 3426418 BPUM_1505 BPUM_1506   ylqH TRUE 0.773 -3.000 0.115 NA   NA
 3426418 3426419 BPUM_1506 BPUM_1507 ylqH sucC FALSE 0.108 177.000 0.038 1.000   NA
 3426419 3426420 BPUM_1507 BPUM_1508 sucC sucD TRUE 0.974 23.000 0.173 0.001 Y NA
 3426420 3426421 BPUM_1508 BPUM_1509 sucD smf FALSE 0.568 64.000 0.037 1.000 N NA
 3426421 3426422 BPUM_1509 BPUM_1510 smf topA TRUE 0.623 194.000 0.238 1.000 Y NA
 3426422 3426423 BPUM_1510 BPUM_1511 topA gidA1 TRUE 0.676 71.000 0.137 1.000 N NA
 3426423 3426424 BPUM_1511 BPUM_1512 gidA1 xerC TRUE 0.681 63.000 0.105 1.000 N NA
 3426424 3426425 BPUM_1512 BPUM_1513 xerC clpQ TRUE 0.868 15.000 0.113 1.000 N NA
 3426425 3426426 BPUM_1513 BPUM_1514 clpQ clpY TRUE 0.986 17.000 0.752 1.000 Y NA
 3426426 3426427 BPUM_1514 BPUM_1515 clpY codY TRUE 0.773 35.000 0.131 1.000 N NA
 3426427 3426428 BPUM_1515 BPUM_1516 codY flgB FALSE 0.021 287.000 0.000 1.000 N NA
 3426428 3426429 BPUM_1516 BPUM_1517 flgB flgC TRUE 0.960 0.000 0.007 0.003 Y NA
 3426429 3426430 BPUM_1517 BPUM_1518 flgC fliE TRUE 0.978 12.000 0.156 0.003 Y NA
 3426430 3426431 BPUM_1518 BPUM_1519 fliE fliF TRUE 0.947 50.000 0.164 0.005 Y NA
 3426431 3426432 BPUM_1519 BPUM_1520 fliF fliG TRUE 0.988 12.000 0.477 0.005 Y NA
 3426432 3426433 BPUM_1520 BPUM_1521 fliG fliH TRUE 0.952 -7.000 0.048 NA Y NA
 3426433 3426434 BPUM_1521 BPUM_1522 fliH fliI TRUE 0.964 -3.000 0.152 NA Y NA
 3426434 3426435 BPUM_1522 BPUM_1523 fliI fliJ TRUE 0.983 -3.000 0.241 0.007 Y NA
 3426435 3426436 BPUM_1523 BPUM_1524 fliJ ylxF TRUE 0.778 13.000 0.095 1.000   NA
 3426436 3426437 BPUM_1524 BPUM_1525 ylxF fliK TRUE 0.715 1.000 0.053 1.000   NA
 3426437 3426438 BPUM_1525 BPUM_1526 fliK flgD FALSE 0.541 0.000 0.023 NA   NA
 3426438 3426439 BPUM_1526 BPUM_1527 flgD flgG TRUE 0.652 18.000 0.058 NA   NA
 3426439 3426440 BPUM_1527 BPUM_1528 flgG   TRUE 0.906 38.000 0.098 NA Y NA
 3426440 3426441 BPUM_1528 BPUM_1529   fliL TRUE 0.964 -3.000 0.149 NA Y NA
 3426441 3426442 BPUM_1529 BPUM_1530 fliL fliM TRUE 0.974 33.000 0.323 0.001 Y NA
 3426442 3426443 BPUM_1530 BPUM_1531 fliM fliY TRUE 0.992 -10.000 0.508 0.001 Y NA
 3426443 3426444 BPUM_1531 BPUM_1532 fliY cheY TRUE 0.768 28.000 0.078 1.000 N NA
 3426444 3426445 BPUM_1532 BPUM_1533 cheY fliZ TRUE 0.800 19.000 0.052 1.000 N NA
 3426445 3426446 BPUM_1533 BPUM_1534 fliZ fliP TRUE 0.983 -7.000 0.386 1.000 Y NA
 3426446 3426447 BPUM_1534 BPUM_1535 fliP fliQ TRUE 0.980 17.000 0.206 0.004 Y NA
 3426447 3426448 BPUM_1535 BPUM_1536 fliQ fliR TRUE 0.992 7.000 0.817 0.002 Y NA
 3426448 3426449 BPUM_1536 BPUM_1537 fliR flhB TRUE 0.990 -3.000 0.750 0.072 Y NA
 3426449 3426450 BPUM_1537 BPUM_1538 flhB flhA TRUE 0.966 30.000 0.203 0.004 Y NA
 3426450 3426451 BPUM_1538 BPUM_1539 flhA flhF TRUE 0.982 0.000 0.440 1.000 Y NA
 3426451 3426452 BPUM_1539 BPUM_1540 flhF ylxH TRUE 0.955 -3.000 0.382 0.099 N NA
 3426452 3426453 BPUM_1540 BPUM_1541 ylxH cheB TRUE 0.893 -3.000 0.153 1.000 N NA
 3426453 3426454 BPUM_1541 BPUM_1542 cheB cheA TRUE 0.987 6.000 0.390 0.009 Y NA
 3426454 3426455 BPUM_1542 BPUM_1543 cheA cheW TRUE 0.970 25.000 0.184 0.009 Y NA
 3426455 3426456 BPUM_1543 BPUM_1544 cheW cheC TRUE 0.965 13.000 0.180 NA Y NA
 3426456 3426457 BPUM_1544 BPUM_1545 cheC cheD TRUE 0.983 0.000 0.606 NA Y NA
 3426457 3426458 BPUM_1545 BPUM_1546 cheD sigD TRUE 0.823 25.000 0.120 1.000 N NA
 3426458 3426459 BPUM_1546 BPUM_1547 sigD ylxL FALSE 0.561 22.000 0.025 1.000   NA
 3426459 3426460 BPUM_1547 BPUM_1548 ylxL rpsB FALSE 0.005 155.000 0.000 NA   NA
 3426460 3426461 BPUM_1548 BPUM_1549 rpsB tsf FALSE 0.011 93.000 0.000 NA   NA
 3426461 3426462 BPUM_1549 BPUM_1550 tsf pyrH FALSE 0.364 205.000 0.416 1.000 N NA
 3426462 3426463 BPUM_1550 BPUM_1551 pyrH frr TRUE 0.955 2.000 0.626 1.000 N NA
 3426463 3426464 BPUM_1551 BPUM_1552 frr uppS TRUE 0.683 130.000 0.409 1.000 N NA
 3426464 3426465 BPUM_1552 BPUM_1553 uppS cdsA TRUE 0.799 109.000 0.113 1.000 Y NA
 3426465 3426466 BPUM_1553 BPUM_1554 cdsA dxr TRUE 0.906 39.000 0.071 1.000 Y NA
 3426466 3426467 BPUM_1554 BPUM_1555 dxr yluC TRUE 0.951 7.000 0.568 1.000 N NA
 3426467 3426468 BPUM_1555 BPUM_1556 yluC proS1 TRUE 0.590 80.000 0.095 1.000 N NA
 3426468 3426469 BPUM_1556 BPUM_1557 proS1 polC TRUE 0.681 76.000 0.070 0.040 N NA
 3426469 3426470 BPUM_1557 BPUM_1558 polC bglC FALSE 0.001 419.000 0.000 1.000   NA
 3426470 3426471 BPUM_1558 BPUM_1559 bglC celB TRUE 0.741 31.000 0.061 0.007   NA
 3426471 3426472 BPUM_1559 BPUM_1560 celB   FALSE 0.261 85.000 0.000 0.007   NA
 3426472 3426473 BPUM_1560 BPUM_1561     TRUE 0.590 19.000 0.000 0.006   NA
 3426473 3426474 BPUM_1561 BPUM_1562   ylxS FALSE 0.001 239.000 0.000 NA   NA
 3426474 3426475 BPUM_1562 BPUM_1563 ylxS nusA TRUE 0.875 33.000 0.759 NA   NA
 3426475 3426476 BPUM_1563 BPUM_1564 nusA ylxR TRUE 0.975 7.000 0.323 NA Y NA
 3426476 3426477 BPUM_1564 BPUM_1565 ylxR ylxQ TRUE 0.946 -13.000 0.408 NA N NA
 3426477 3426478 BPUM_1565 BPUM_1566 ylxQ infB TRUE 0.964 20.000 0.223 NA Y NA
 3426478 3426479 BPUM_1566 BPUM_1567 infB   TRUE 0.759 -3.000 0.102 NA   NA
 3426479 3426480 BPUM_1567 BPUM_1568   rbfA TRUE 0.742 18.000 0.113 NA   NA
 3426480 3426481 BPUM_1568 BPUM_1569 rbfA truB TRUE 0.880 69.000 0.111 1.000 Y NA
 3426481 3426482 BPUM_1569 BPUM_1570 truB ribC TRUE 0.917 19.000 0.308 1.000 N NA
 3426482 3426483 BPUM_1570 BPUM_1571 ribC rpsO FALSE 0.451 141.000 0.119 1.000 N NA
 3426483 3426484 BPUM_1571 BPUM_1572 rpsO pnpA TRUE 0.712 181.000 0.335 1.000 Y NA
 3426484 3426485 BPUM_1572 BPUM_1573 pnpA ylxY FALSE 0.400 115.000 0.048 1.000 N NA
 3426485 3426486 BPUM_1573 BPUM_1574 ylxY mlpA TRUE 0.670 34.000 0.127 1.000   NA
 3426486 3426487 BPUM_1574 BPUM_1575 mlpA aph FALSE 0.041 74.000 0.000 1.000   NA
 3426487 3426488 BPUM_1575 BPUM_1576 aph ymxH FALSE 0.016 71.000 0.000 NA   NA
 3426488 3426489 BPUM_1576 BPUM_1577 ymxH spoVFA FALSE 0.008 124.000 0.000 NA   NA
 3426489 3426490 BPUM_1577 BPUM_1578 spoVFA spoVFB TRUE 0.676 -3.000 0.000 0.002   NA
 3426490 3426491 BPUM_1578 BPUM_1579 spoVFB asd FALSE 0.169 140.000 0.025 1.000   NA
 3426491 3426492 BPUM_1579 BPUM_1580 asd dapG TRUE 0.802 93.000 0.065 1.000 Y NA
 3426492 3426493 BPUM_1580 BPUM_1581 dapG dapA2 TRUE 0.908 31.000 0.045 1.000 Y NA
 3426493 3426494 BPUM_1581 BPUM_1582 dapA2   FALSE 0.181 172.000 0.083 1.000   NA
 3426494 3426495 BPUM_1582 BPUM_1583   clpP1 FALSE 0.547 104.000 0.257 1.000   NA
 3426495 3426496 BPUM_1583 BPUM_1584 clpP1   TRUE 0.785 -3.000 0.129 NA   NA
 3426496 3426497 BPUM_1584 BPUM_1585   spoIIIE FALSE 0.227 111.000 0.052 NA   NA
 3426497 3426498 BPUM_1585 BPUM_1586 spoIIIE ymfC FALSE 0.339 166.000 0.115 1.000 N NA
 3426498 3426499 BPUM_1586 BPUM_1587 ymfC   FALSE 0.001 1650.000 0.000 1.000   NA
 3426499 3426500 BPUM_1587 BPUM_1588     FALSE 0.018 146.000 0.000 1.000   NA
 3426500 3426501 BPUM_1588 BPUM_1589     TRUE 0.967 -3.000 0.872 0.006   NA
 3426501 3426502 BPUM_1589 BPUM_1590     FALSE 0.016 151.000 0.000 1.000   NA
 3426502 3426503 BPUM_1590 BPUM_1591   ydgH FALSE 0.182 -22.000 0.000 1.000   NA
 3426503 3426504 BPUM_1591 BPUM_1592 ydgH ymfI FALSE 0.077 32.000 0.000 1.000   NA
 3426504 3426505 BPUM_1592 BPUM_1593 ymfI ymfJ TRUE 0.694 74.000 0.386 NA   NA
 3426505 3426506 BPUM_1593 BPUM_1594 ymfJ   FALSE 0.533 132.000 0.388 NA   NA
 3426506 3426507 BPUM_1594 BPUM_1595   ymfM TRUE 0.903 15.000 0.371 1.000   NA
 3426507 3426508 BPUM_1595 BPUM_1596 ymfM pgsA FALSE 0.449 76.000 0.077 1.000   NA
 3426508 3426509 BPUM_1596 BPUM_1597 pgsA cinA TRUE 0.815 17.000 0.151 1.000   NA
 3426509 3426510 BPUM_1597 BPUM_1598 cinA recA FALSE 0.165 177.000 0.083 1.000   NA
 3426510 3426511 BPUM_1598 BPUM_1599 recA ymdA FALSE 0.039 306.000 0.018 1.000 N NA
 3426511 3426512 BPUM_1599 BPUM_1600 ymdA ymdB TRUE 0.589 88.000 0.245 1.000   NA
 3426512 3426513 BPUM_1600 BPUM_1601 ymdB spoVS FALSE 0.124 202.000 0.139 NA   NA
 3426513 3426514 BPUM_1601 BPUM_1602 spoVS yerP FALSE 0.002 203.000 0.000 NA   NA
 3426514 3426515 BPUM_1602 BPUM_1603 yerP tdh FALSE 0.083 175.000 0.000 1.000 N NA
 3426515 3426516 BPUM_1603 BPUM_1604 tdh kbl TRUE 0.862 -3.000 0.085 1.000 N NA
 3426516 3426517 BPUM_1604 BPUM_1605 kbl ymcB FALSE 0.203 159.000 0.005 1.000 N NA
 3426517 3426518 BPUM_1605 BPUM_1606 ymcB ymcA TRUE 0.620 2.000 0.041 NA   NA
 3426518 3426519 BPUM_1606 BPUM_1607 ymcA cotE FALSE 0.028 452.000 0.209 NA   NA
 3426519 3426520 BPUM_1607 BPUM_1608 cotE mutS1 FALSE 0.156 125.000 0.027 NA   NA
 3426520 3426521 BPUM_1608 BPUM_1609 mutS1 mutL TRUE 0.979 21.000 0.220 0.001 Y NA
 3426522 3426523 BPUM_1610 BPUM_1611 yuaB   FALSE 0.008 126.000 0.000 NA   NA
 3426523 3426524 BPUM_1611 BPUM_1612     FALSE 0.009 108.000 0.000 NA   NA
 3426525 3426526 BPUM_1613 BPUM_1614 carD ymaC FALSE 0.001 312.000 0.000 NA   NA
 3426526 3426527 BPUM_1614 BPUM_1615 ymaC   FALSE 0.004 166.000 0.000 NA   NA
 3426529 3426530 BPUM_1617 BPUM_1618   ymaD FALSE 0.430 78.000 0.107 NA   NA
 3426531 3426532 BPUM_1619 BPUM_1620 ebrB ebrA TRUE 0.934 14.000 0.000 0.072 Y NA
 3426532 3426533 BPUM_1620 BPUM_1621 ebrA   TRUE 0.805 0.000 0.038 1.000 N NA
 3426533 3426534 BPUM_1621 BPUM_1622   ymaG FALSE 0.009 113.000 0.000 NA   NA
 3426535 3426536 BPUM_1623 BPUM_1624 ymaF miaA FALSE 0.310 31.000 0.009 NA   NA
 3426536 3426537 BPUM_1624 BPUM_1625 miaA ymaH TRUE 0.785 26.000 0.192 1.000   NA
 3426537 3426538 BPUM_1625 BPUM_1626 ymaH ymzC FALSE 0.086 158.000 0.019 NA   NA
 3426538 3426539 BPUM_1626 BPUM_1627 ymzC ymzA TRUE 0.710 80.000 0.500 NA   NA
 3426539 3426540 BPUM_1627 BPUM_1628 ymzA nrdI FALSE 0.001 261.000 0.000 NA   NA
 3426540 3426541 BPUM_1628 BPUM_1629 nrdI nrdE TRUE 0.927 -40.000 0.000 NA Y NA
 3426541 3426542 BPUM_1629 BPUM_1630 nrdE nrdF TRUE 0.942 18.000 0.000 0.001 Y NA
 3426542 3426543 BPUM_1630 BPUM_1631 nrdF ymaB FALSE 0.034 85.000 0.000 1.000   NA
 3426545 3426546 BPUM_1633 BPUM_1634 spoVK   FALSE 0.162 122.000 0.010 1.000   NA
 3426546 3426547 BPUM_1634 BPUM_1635   ynbB TRUE 0.711 19.000 0.065 1.000   NA
 3426547 3426548 BPUM_1635 BPUM_1636 ynbB glnR TRUE 0.592 91.000 0.138 1.000 N NA
 3426548 3426549 BPUM_1636 BPUM_1637 glnR glnA TRUE 0.856 60.000 0.481 1.000 N NA
 3426549 3426550 BPUM_1637 BPUM_1638 glnA   FALSE 0.000 481.000 0.000 NA   NA
 3426550 3426551 BPUM_1638 BPUM_1639     FALSE 0.002 207.000 0.000 NA   NA
 3426551 3426552 BPUM_1639 BPUM_1640     FALSE 0.000 727.000 0.000 NA   NA
 3426552 3426553 BPUM_1640 BPUM_1641     FALSE 0.004 167.000 0.000 NA   NA
 3426553 3426554 BPUM_1641 BPUM_1642     FALSE 0.055 1.000 0.000 NA   NA
 3426554 3426555 BPUM_1642 BPUM_1643     FALSE 0.076 -36.000 0.000 NA   NA
 3426555 3426556 BPUM_1643 BPUM_1644   yqaQ FALSE 0.057 -3.000 0.000 NA   NA
 3426556 3426557 BPUM_1644 BPUM_1645 yqaQ yjcP FALSE 0.006 151.000 0.000 NA   NA
 3426557 3426558 BPUM_1645 BPUM_1646 yjcP   FALSE 0.013 80.000 0.000 NA   NA
 3426558 3426559 BPUM_1646 BPUM_1647   yjcR FALSE 0.002 214.000 0.000 NA   NA
 3426559 3426560 BPUM_1647 BPUM_1648 yjcR yqbB FALSE 0.017 67.000 0.000 NA   NA
 3426560 3426561 BPUM_1648 BPUM_1649 yqbB yobJ FALSE 0.034 27.000 0.000 NA   NA
 3426561 3426562 BPUM_1649 BPUM_1650 yobJ   FALSE 0.026 35.000 0.000 NA   NA
 3426562 3426563 BPUM_1650 BPUM_1651     FALSE 0.000 404.000 0.000 NA   NA
 3426563 3426564 BPUM_1651 BPUM_1652     FALSE 0.000 391.000 0.000 NA   NA
 3426564 3426565 BPUM_1652 BPUM_1653     FALSE 0.054 6.000 0.000 NA   NA
 3426565 3426566 BPUM_1653 BPUM_1654     FALSE 0.004 174.000 0.000 NA   NA
 3426566 3426567 BPUM_1654 BPUM_1655     TRUE 0.697 0.000 0.065 NA   NA
 3426569 3426570 BPUM_1657 BPUM_1658     FALSE 0.019 141.000 0.000 1.000   NA
 3426572 3426573 BPUM_1660 BPUM_1661     FALSE 0.015 75.000 0.000 NA   NA
 3426573 3426574 BPUM_1661 BPUM_1662     FALSE 0.023 45.000 0.000 NA   NA
 3426574 3426575 BPUM_1662 BPUM_1663     FALSE 0.003 258.000 0.000 1.000   NA
 3426575 3426576 BPUM_1663 BPUM_1664     FALSE 0.000 460.000 0.000 NA   NA
 3426577 3426578 BPUM_1665 BPUM_1666 yoaK ykoU FALSE 0.026 35.000 0.000 NA   NA
 3426581 3426582 BPUM_1669 BPUM_1670     FALSE 0.022 49.000 0.000 NA   NA
 3426582 3426583 BPUM_1670 BPUM_1671     FALSE 0.451 102.000 0.074 NA N NA
 3426583 3426584 BPUM_1671 BPUM_1672   yvfV FALSE 0.098 167.000 0.000 1.000 N NA
 3426584 3426585 BPUM_1672 BPUM_1673 yvfV yvfW TRUE 0.985 22.000 0.947 1.000 Y NA
 3426585 3426586 BPUM_1673 BPUM_1674 yvfW   TRUE 0.955 0.000 0.500 0.001   NA
 3426586 3426587 BPUM_1674 BPUM_1675     FALSE 0.017 147.000 0.000 1.000   NA
 3426589 3426590 BPUM_1677 BPUM_1678   ydfS FALSE 0.018 66.000 0.000 NA   NA
 3426590 3426591 BPUM_1678 BPUM_1679 ydfS yrhI FALSE 0.002 226.000 0.000 NA   NA
 3426591 3426592 BPUM_1679 BPUM_1680 yrhI yrhJ TRUE 0.883 22.000 0.211 1.000 N NA
 3426592 3426593 BPUM_1680 BPUM_1681 yrhJ mpr FALSE 0.063 192.000 0.000 1.000 N NA
 3426593 3426594 BPUM_1681 BPUM_1682 mpr nucB FALSE 0.002 214.000 0.000 NA   NA
 3426594 3426595 BPUM_1682 BPUM_1683 nucB yojH FALSE 0.007 139.000 0.000 NA   NA
 3426599 3426600 BPUM_1687 BPUM_1688 yneA yneB TRUE 0.739 18.000 0.075 1.000   NA
 3426600 3426601 BPUM_1688 BPUM_1689 yneB ynzC TRUE 0.645 70.000 0.264 NA   NA
 3426601 3426602 BPUM_1689 BPUM_1690 ynzC tkt FALSE 0.191 188.000 0.196 NA   NA
 3426602 3426603 BPUM_1690 BPUM_1691 tkt yneE FALSE 0.283 198.000 0.440 NA   NA
 3426603 3426604 BPUM_1691 BPUM_1692 yneE yneF FALSE 0.515 85.000 0.197 NA   NA
 3426606 3426607 BPUM_1694 BPUM_1695 ccdA yneJ TRUE 0.623 95.000 0.000 NA Y NA
 3426608 3426609 BPUM_1696 BPUM_1697 yneK sspP FALSE 0.000 765.000 0.000 NA   NA
 3426609 3426610 BPUM_1697 BPUM_1698 sspP sspO TRUE 0.841 17.000 0.192 1.000   NA
 3426611 3426612 BPUM_1699 BPUM_1700 citB yneN FALSE 0.439 75.000 0.008 1.000 N NA
 3426612 3426613 BPUM_1700 BPUM_1701 yneN   TRUE 0.647 63.000 0.222 NA   NA
 3426613 3426614 BPUM_1701 BPUM_1702   sspN TRUE 0.849 49.000 0.773 NA   NA
 3426614 3426615 BPUM_1702 BPUM_1703 sspN tlp TRUE 0.913 14.000 0.500 NA   NA
 3426615 3426616 BPUM_1703 BPUM_1704 tlp yneP FALSE 0.363 104.000 0.125 NA   NA
 3426616 3426617 BPUM_1704 BPUM_1705 yneP yneQ TRUE 0.777 4.000 0.129 NA   NA
 3426618 3426619 BPUM_1706 BPUM_1707 yneR yneS FALSE 0.237 102.000 0.048 NA   NA
 3426620 3426621 BPUM_1708 BPUM_1709 yneT parE FALSE 0.009 391.000 0.030 NA   NA
 3426621 3426622 BPUM_1709 BPUM_1710 parE parC TRUE 0.964 3.000 0.019 0.001 Y NA
 3426623 3426624 BPUM_1711 BPUM_1712   ynfC FALSE 0.024 44.000 0.000 NA   NA
 3426624 3426625 BPUM_1712 BPUM_1713 ynfC   FALSE 0.002 195.000 0.000 NA   NA
 3426625 3426626 BPUM_1713 BPUM_1714     FALSE 0.022 52.000 0.000 NA   NA
 3426628 3426629 BPUM_1716 BPUM_1717     TRUE 0.596 119.000 0.400 1.000   NA
 3426629 3426630 BPUM_1717 BPUM_1718     FALSE 0.000 349.000 0.000 NA   NA
 3426631 3426632 BPUM_1719 BPUM_1720   azlD FALSE 0.015 73.000 0.000 NA   NA
 3426635 3426636 BPUM_1723 BPUM_1724 thrC2 yabJA FALSE 0.522 73.000 0.054 NA N NA
 3426636 3426637 BPUM_1724 BPUM_1725 yabJA   TRUE 0.901 12.000 0.429 NA   NA
 3426637 3426638 BPUM_1725 BPUM_1726     FALSE 0.002 223.000 0.000 NA   NA
 3426640 3426641 BPUM_1728 BPUM_1729     TRUE 0.698 79.000 0.455 NA   NA
 3426641 3426642 BPUM_1729 BPUM_1730     TRUE 0.798 73.000 0.000 0.056 Y NA
 3426643 3426644 BPUM_1731 BPUM_1732     FALSE 0.065 42.000 0.000 1.000   NA
 3426644 3426645 BPUM_1732 BPUM_1733     FALSE 0.054 12.000 0.000 NA   NA
 3426647 3426648 BPUM_1735 BPUM_1736     FALSE 0.010 98.000 0.000 NA   NA
 3426649 3426650 BPUM_1737 BPUM_1738     FALSE 0.008 119.000 0.000 NA   NA
 3426650 3426651 BPUM_1738 BPUM_1739     FALSE 0.002 203.000 0.000 NA   NA
 3426651 3426652 BPUM_1739 BPUM_1740     FALSE 0.437 31.000 0.000 1.000 N NA
 3426652 3426653 BPUM_1740 BPUM_1741     FALSE 0.036 228.000 0.000 1.000 N NA
 3426653 3426654 BPUM_1741 BPUM_1742     TRUE 0.966 24.000 0.286 1.000 Y NA
 3426654 3426655 BPUM_1742 BPUM_1743     FALSE 0.509 120.000 0.250 1.000   NA
 3426657 3426658 BPUM_1745 BPUM_1746     TRUE 0.987 3.000 0.765 1.000 Y NA
 3426658 3426659 BPUM_1746 BPUM_1747   ynfF FALSE 0.442 133.000 0.087 1.000 N NA
 3426659 3426660 BPUM_1747 BPUM_1748 ynfF xynD TRUE 0.775 35.000 0.130 0.020   NA
 3426660 3426661 BPUM_1748 BPUM_1749 xynD mmsA FALSE 0.005 224.000 0.000 1.000   NA
 3426661 3426662 BPUM_1749 BPUM_1750 mmsA melA FALSE 0.013 339.000 0.000 1.000 N NA
 3426662 3426663 BPUM_1750 BPUM_1751 melA amyC TRUE 0.945 34.000 0.217 1.000 Y NA
 3426663 3426664 BPUM_1751 BPUM_1752 amyC amyD TRUE 0.989 0.000 0.588 0.039 Y NA
 3426664 3426665 BPUM_1752 BPUM_1753 amyD msmE TRUE 0.983 31.000 0.818 0.039 Y NA
 3426665 3426666 BPUM_1753 BPUM_1754 msmE msmR FALSE 0.293 219.000 0.364 1.000 N NA
 3426666 3426667 BPUM_1754 BPUM_1755 msmR   FALSE 0.072 182.000 0.000 1.000 N NA
 3426667 3426668 BPUM_1755 BPUM_1756   ulaA TRUE 0.643 18.000 0.037 1.000   NA
 3426668 3426669 BPUM_1756 BPUM_1757 ulaA sgaB TRUE 0.905 26.000 0.377 0.015   NA
 3426669 3426670 BPUM_1757 BPUM_1758 sgaB   TRUE 0.863 16.000 0.026 0.013 N NA
 3426670 3426671 BPUM_1758 BPUM_1759     FALSE 0.001 321.000 0.000 NA   NA
 3426673 3426674 BPUM_1761 BPUM_1762     FALSE 0.011 93.000 0.000 NA   NA
 3426674 3426675 BPUM_1762 BPUM_1763     FALSE 0.006 151.000 0.000 NA   NA
 3426675 3426676 BPUM_1763 BPUM_1764     FALSE 0.023 47.000 0.000 NA   NA
 3426676 3426677 BPUM_1764 BPUM_1765     FALSE 0.000 376.000 0.000 NA   NA
 3426679 3426680 BPUM_1767 BPUM_1768     TRUE 0.976 3.000 0.286 1.000 Y NA
 3426680 3426681 BPUM_1768 BPUM_1769   fruAA TRUE 0.980 16.000 0.217 0.011 Y NA
 3426681 3426682 BPUM_1769 BPUM_1770 fruAA   TRUE 0.977 13.000 0.304 1.000 Y NA
 3426682 3426683 BPUM_1770 BPUM_1771     TRUE 0.719 131.000 0.545 1.000 N NA
 3426685 3426686 BPUM_1773 BPUM_1774     TRUE 0.889 22.000 0.500 NA   NA
 3426686 3426687 BPUM_1774 BPUM_1775     TRUE 0.941 14.000 0.857 NA   NA
 3426688 3426689 BPUM_1776 BPUM_1777   cysJ FALSE 0.046 212.000 0.000 1.000 N NA
 3426689 3426690 BPUM_1777 BPUM_1778 cysJ cysI TRUE 0.983 38.000 0.791 0.001 Y NA
 3426691 3426692 BPUM_1779 BPUM_1780 acsA2 yngE TRUE 0.964 18.000 0.167 1.000 Y NA
 3426692 3426693 BPUM_1780 BPUM_1781 yngE yngF TRUE 0.981 13.000 0.426 1.000 Y NA
 3426693 3426694 BPUM_1781 BPUM_1782 yngF yngG TRUE 0.968 15.000 0.690 0.067 N NA
 3426694 3426695 BPUM_1782 BPUM_1783 yngG pycAA TRUE 0.941 12.000 0.778 1.000   NA
 3426695 3426696 BPUM_1783 BPUM_1784 pycAA yngH TRUE 0.957 -3.000 0.553 0.003   NA
 3426696 3426697 BPUM_1784 BPUM_1785 yngH yngI TRUE 0.980 9.000 0.237 0.067 Y NA
 3426697 3426698 BPUM_1785 BPUM_1786 yngI yngJ TRUE 0.903 43.000 0.074 1.000 Y NA
 3426698 3426699 BPUM_1786 BPUM_1787 yngJ   FALSE 0.137 143.000 0.012 1.000   NA
 3426699 3426700 BPUM_1787 BPUM_1788   ptp FALSE 0.018 145.000 0.000 1.000   NA
 3426703 3426704 BPUM_1791 BPUM_1792   glcD TRUE 0.728 72.000 0.247 NA N NA
 3426704 3426705 BPUM_1792 BPUM_1793 glcD glcF TRUE 0.988 -3.000 0.342 0.001 Y NA
 3426705 3426706 BPUM_1793 BPUM_1794 glcF gerA FALSE 0.049 65.000 0.000 1.000   NA
 3426706 3426707 BPUM_1794 BPUM_1795 gerA gerB TRUE 0.945 13.000 0.450 0.007   NA
 3426707 3426708 BPUM_1795 BPUM_1796 gerB gerC TRUE 0.692 -21.000 0.000 0.007   NA
 3426709 3426710 BPUM_1797 BPUM_1798     FALSE 0.021 56.000 0.000 NA   NA
 3426710 3426711 BPUM_1798 BPUM_1799     FALSE 0.019 62.000 0.000 NA   NA
 3426717 3426718 BPUM_1805 BPUM_1806 cat86   FALSE 0.049 65.000 0.000 1.000   NA
 3426718 3426719 BPUM_1806 BPUM_1807   dacC FALSE 0.546 20.000 0.000 1.000 N NA
 3426719 3426720 BPUM_1807 BPUM_1808 dacC pme FALSE 0.170 128.000 0.000 1.000 N NA
 3426720 3426721 BPUM_1808 BPUM_1809 pme yetF FALSE 0.011 95.000 0.000 NA   NA
 3426721 3426722 BPUM_1809 BPUM_1810 yetF nasE FALSE 0.032 28.000 0.000 NA   NA
 3426722 3426723 BPUM_1810 BPUM_1811 nasE nasD TRUE 0.905 15.000 0.055 0.001 N NA
 3426725 3426726 BPUM_1813 BPUM_1814 gltB gltA TRUE 0.982 17.000 0.222 0.001 Y NA
 3426727 3426728 BPUM_1815 BPUM_1816 gltC yfiB FALSE 0.216 95.000 0.000 1.000 N NA
 3426728 3426729 BPUM_1816 BPUM_1817 yfiB yfiC TRUE 0.991 9.000 0.784 0.004 Y NA
 3426732 3426733 BPUM_1820 BPUM_1821   yjcK FALSE 0.210 98.000 0.000 1.000 N NA
 3426733 3426734 BPUM_1821 BPUM_1822 yjcK proA2 FALSE 0.238 85.000 0.000 1.000 N NA
 3426734 3426735 BPUM_1822 BPUM_1823 proA2 proJ TRUE 0.984 14.000 0.281 0.004 Y NA
 3426735 3426736 BPUM_1823 BPUM_1824 proJ proH TRUE 0.931 28.000 0.009 0.004 Y NA
 3426737 3426738 BPUM_1825 BPUM_1826   yoaE FALSE 0.312 122.000 0.000 0.034 N NA
 3426739 3426740 BPUM_1827 BPUM_1828   xylB FALSE 0.031 91.000 0.000 1.000   NA
 3426740 3426741 BPUM_1828 BPUM_1829 xylB xylA TRUE 0.917 36.000 0.091 1.000 Y NA
 3426743 3426744 BPUM_1831 BPUM_1832 xynB xynP TRUE 0.953 24.000 0.154 1.000 Y NA
 3426744 3426745 BPUM_1832 BPUM_1833 xynP csaA FALSE 0.001 515.000 0.000 1.000   NA
 3426747 3426748 BPUM_1835 BPUM_1836     TRUE 0.911 -7.000 0.400 NA   NA
 3426748 3426749 BPUM_1836 BPUM_1837     TRUE 0.929 -37.000 0.417 NA   NA
 3426749 3426750 BPUM_1837 BPUM_1838   yobS FALSE 0.006 149.000 0.000 NA   NA
 3426750 3426751 BPUM_1838 BPUM_1839 yobS   TRUE 0.794 4.000 0.111 1.000   NA
 3426751 3426752 BPUM_1839 BPUM_1840     FALSE 0.357 38.000 0.026 NA   NA
 3426752 3426753 BPUM_1840 BPUM_1841   yobV FALSE 0.413 55.000 0.051 NA   NA
 3426756 3426757 BPUM_1844 BPUM_1845   yocA FALSE 0.423 98.000 0.154 NA   NA
 3426758 3426759 BPUM_1846 BPUM_1847 yqiQ prpD TRUE 0.864 13.000 0.218 1.000   NA
 3426759 3426760 BPUM_1847 BPUM_1848 prpD mmgD TRUE 0.864 3.000 0.216 1.000   NA
 3426760 3426761 BPUM_1848 BPUM_1849 mmgD yozB FALSE 0.004 169.000 0.000 NA   NA
 3426763 3426764 BPUM_1851 BPUM_1852 yocH yocI FALSE 0.003 257.000 0.000 1.000   NA
 3426764 3426765 BPUM_1852 BPUM_nc0014 yocI ssrS FALSE 0.005 159.000 0.000 NA   NA
 3426765 3426766 BPUM_nc0014 BPUM_1853 ssrS yocK FALSE 0.006 145.000 0.000 NA   NA
 3426766 3426767 BPUM_1853 BPUM_1854 yocK yhfK FALSE 0.070 185.000 0.000 1.000 N NA
 3426767 3426768 BPUM_1854 BPUM_1855 yhfK yozO FALSE 0.003 178.000 0.000 NA   NA
 3426768 3426769 BPUM_1855 BPUM_1856 yozO yozC FALSE 0.000 467.000 0.000 NA   NA
 3426770 3426771 BPUM_1857 BPUM_1858 dhaS sqhC TRUE 0.617 103.000 0.103 0.066 N NA
 3426771 3426772 BPUM_1858 BPUM_1859 sqhC sodF TRUE 0.831 -7.000 0.040 1.000 N NA
 3426772 3426773 BPUM_1859 BPUM_1860 sodF yocS FALSE 0.016 151.000 0.000 1.000   NA
 3426774 3426775 BPUM_1861 BPUM_1862 odhB odhA TRUE 0.985 15.000 0.667 1.000 Y NA
 3426775 3426776 BPUM_1862 BPUM_1863 odhA yojO FALSE 0.026 226.000 0.000 NA N NA
 3426776 3426777 BPUM_1863 BPUM_1864 yojO   TRUE 0.937 12.000 0.822 NA   NA
 3426777 3426778 BPUM_1864 BPUM_1865   yojM FALSE 0.282 90.000 0.035 1.000   NA
 3426778 3426779 BPUM_1865 BPUM_1866 yojM   FALSE 0.027 34.000 0.000 NA   NA
 3426779 3426780 BPUM_1866 BPUM_1867     FALSE 0.000 420.000 0.000 NA   NA
 3426782 3426783 BPUM_1869 BPUM_1870     TRUE 0.915 19.000 0.644 NA   NA
 3426783 3426784 BPUM_1870 BPUM_1871     TRUE 0.746 -3.000 0.089 NA   NA
 3426784 3426785 BPUM_1871 BPUM_1872   rarD FALSE 0.179 79.000 0.011 NA   NA
 3426787 3426788 BPUM_1874 BPUM_1875   yodB FALSE 0.014 76.000 0.000 NA   NA
 3426789 3426790 BPUM_1876 BPUM_1877     FALSE 0.001 237.000 0.000 NA   NA
 3426790 3426791 BPUM_1877 BPUM_1878   yodF TRUE 0.920 0.000 0.571 NA   NA
 3426792 3426793 BPUM_1879 BPUM_1880   ctpA FALSE 0.009 346.000 0.000 NA N NA
 3426794 3426795 BPUM_1881 BPUM_1882   yodI FALSE 0.341 93.000 0.083 NA   NA
 3426796 3426797 BPUM_1883 BPUM_1884 yodJ deoD TRUE 0.767 69.000 0.253 1.000 N NA
 3426797 3426798 BPUM_1884 BPUM_1885 deoD   FALSE 0.009 114.000 0.000 NA   NA
 3426798 3426799 BPUM_1885 BPUM_1886     TRUE 0.666 55.000 0.211 NA   NA
 3426799 3426800 BPUM_1886 BPUM_1887   yozD TRUE 0.656 49.000 0.190 NA   NA
 3426802 3426803 BPUM_1889 BPUM_1890 yodN yozE FALSE 0.242 145.000 0.091 NA   NA
 3426803 3426804 BPUM_1890 BPUM_1891 yozE   FALSE 0.418 79.000 0.102 NA   NA
 3426804 3426805 BPUM_1891 BPUM_1892   kamA TRUE 0.771 3.000 0.124 NA   NA
 3426805 3426806 BPUM_1892 BPUM_1893 kamA   FALSE 0.177 118.000 0.000 1.000 N NA
 3426806 3426807 BPUM_1893 BPUM_1894   cgeD FALSE 0.081 159.000 0.000 NA N NA
 3426807 3426808 BPUM_1894 BPUM_1895 cgeD cgeC FALSE 0.049 18.000 0.000 NA   NA
 3426809 3426810 BPUM_1896 BPUM_1897 cgeA cgeB TRUE 0.933 16.000 0.800 NA   NA
 3426813 3426814 BPUM_1900 BPUM_1901 msrB msrA TRUE 0.973 -3.000 0.054 0.001 Y NA
 3426815 3426816 BPUM_1902 BPUM_1903     FALSE 0.021 55.000 0.000 NA   NA
 3426816 3426817 BPUM_1903 BPUM_1904     FALSE 0.008 121.000 0.000 NA   NA
 3426818 3426819 BPUM_1905 BPUM_1906 ypmT ypmS FALSE 0.563 23.000 0.047 NA   NA
 3426819 3426820 BPUM_1906 BPUM_1907 ypmS ypmR TRUE 0.937 10.000 0.828 NA   NA
 3426820 3426821 BPUM_1907 BPUM_1908 ypmR ypmQ FALSE 0.458 70.000 0.068 1.000   NA
 3426821 3426822 BPUM_1908 BPUM_1909 ypmQ   TRUE 0.634 25.000 0.077 NA   NA
 3426822 3426823 BPUM_1909 BPUM_1910   ypmP FALSE 0.357 188.000 0.577 NA   NA
 3426823 3426824 BPUM_1910 BPUM_1911 ypmP ilvA FALSE 0.460 37.000 0.050 NA   NA
 3426825 3426826 BPUM_1912 BPUM_1913 yplP   TRUE 0.603 15.000 0.019 1.000   NA
 3426827 3426828 BPUM_1914 BPUM_1915 ypkP dfrA FALSE 0.540 20.000 0.015 1.000   NA
 3426828 3426829 BPUM_1915 BPUM_1916 dfrA thyB TRUE 0.929 -3.000 0.295 1.000 N NA
 3426829 3426830 BPUM_1916 BPUM_1917 thyB   FALSE 0.321 104.000 0.003 1.000 N NA
 3426830 3426831 BPUM_1917 BPUM_1918   ypjP TRUE 0.759 7.000 0.111 NA   NA
 3426833 3426834 BPUM_1920 BPUM_1921 ypiP yphP FALSE 0.446 67.000 0.081 NA   NA
 3426834 3426835 BPUM_1921 BPUM_1922 yphP ilvD FALSE 0.153 82.000 0.006 NA   NA
 3426835 3426836 BPUM_1922 BPUM_1923 ilvD ypgR FALSE 0.002 308.000 0.000 1.000   NA
 3426836 3426837 BPUM_1923 BPUM_1924 ypgR ypgQ FALSE 0.079 31.000 0.000 1.000   NA
 3426837 3426838 BPUM_1924 BPUM_1925 ypgQ bsaA TRUE 0.629 14.000 0.026 1.000   NA
 3426838 3426839 BPUM_1925 BPUM_1926 bsaA fhs FALSE 0.540 75.000 0.049 1.000 N NA
 3426840 3426841 BPUM_1927 BPUM_1928 metA ugtP FALSE 0.036 229.000 0.000 1.000 N NA
 3426844 3426845 BPUM_1931 BPUM_1932 degR ypeQ FALSE 0.004 170.000 0.000 NA   NA
 3426845 3426846 BPUM_1932 BPUM_1933 ypeQ ypeP TRUE 0.929 2.000 0.680 NA   NA
 3426847 3426848 BPUM_1934 BPUM_1935 ypdP rnhA TRUE 0.607 2.000 0.039 NA   NA
 3426848 3426849 BPUM_1935 BPUM_1936 rnhA sspL FALSE 0.023 45.000 0.000 NA   NA
 3426850 3426851 BPUM_1937 BPUM_1938 ypcP ypbS FALSE 0.001 275.000 0.000 NA   NA
 3426851 3426852 BPUM_1938 BPUM_1939 ypbS   TRUE 0.569 42.000 0.107 NA   NA
 3426852 3426853 BPUM_1939 BPUM_1940   ypbQ FALSE 0.022 305.000 0.029 1.000   NA
 3426853 3426854 BPUM_1940 BPUM_1941 ypbQ bcsA TRUE 0.889 -3.000 0.279 1.000   NA
 3426856 3426857 BPUM_1943 BPUM_1944 pbuX xpt TRUE 0.943 -3.000 0.019 1.000 Y NA
 3426857 3426858 BPUM_1944 BPUM_1945 xpt ypwA FALSE 0.024 354.000 0.009 1.000 N NA
 3426858 3426859 BPUM_1945 BPUM_1946 ypwA ypvA FALSE 0.490 128.000 0.118 1.000 N NA
 3426861 3426862 BPUM_1948 BPUM_1949     FALSE 0.049 18.000 0.000 NA   NA
 3426862 3426863 BPUM_1949 BPUM_1950     FALSE 0.008 116.000 0.000 NA   NA
 3426863 3426864 BPUM_1950 BPUM_nc0016     FALSE 0.009 108.000 0.000 NA   NA
 3426864 3426865 BPUM_nc0016 BPUM_1951   ypsB FALSE 0.010 98.000 0.000 NA   NA
 3426865 3426866 BPUM_1951 BPUM_1952 ypsB ypsA TRUE 0.804 58.000 0.579 NA   NA
 3426866 3426867 BPUM_1952 BPUM_1953 ypsA yprB FALSE 0.005 530.000 0.017 NA   NA
 3426867 3426868 BPUM_1953 BPUM_1954 yprB yprA TRUE 0.868 24.000 0.185 0.011   NA
 3426872 3426873 BPUM_1958 BPUM_1959 yppG yppE FALSE 0.195 107.000 0.037 NA   NA
 3426874 3426875 BPUM_1960 BPUM_1961   sspM FALSE 0.011 96.000 0.000 NA   NA
 3426877 3426878 BPUM_1963 BPUM_1964 recU ponA FALSE 0.560 38.000 0.062 1.000   NA
 3426879 3426880 BPUM_1965 BPUM_1966 ypoC nth TRUE 0.602 -3.000 0.034 NA   NA
 3426880 3426881 BPUM_1966 BPUM_1967 nth dnaD TRUE 0.946 18.000 0.075 NA Y NA
 3426881 3426882 BPUM_1967 BPUM_1968 dnaD asnS TRUE 0.628 98.000 0.234 NA N NA
 3426882 3426883 BPUM_1968 BPUM_1969 asnS ypmB FALSE 0.485 50.000 0.051 1.000   NA
 3426883 3426884 BPUM_1969 BPUM_1970 ypmB ypmA TRUE 0.870 13.000 0.289 NA   NA
 3426884 3426885 BPUM_1970 BPUM_1971 ypmA dinG FALSE 0.212 133.000 0.056 NA   NA
 3426885 3426886 BPUM_1971 BPUM_1972 dinG panD FALSE 0.414 114.000 0.053 1.000 N NA
 3426886 3426887 BPUM_1972 BPUM_1973 panD panC TRUE 0.982 -7.000 0.342 1.000 Y NA
 3426887 3426888 BPUM_1973 BPUM_1974 panC panB TRUE 0.989 -3.000 0.395 0.001 Y NA
 3426888 3426889 BPUM_1974 BPUM_1975 panB birA FALSE 0.369 198.000 0.002 1.000 Y NA
 3426889 3426890 BPUM_1975 BPUM_1976 birA cca TRUE 0.912 -27.000 0.134 1.000 N NA
 3426890 3426891 BPUM_1976 BPUM_1977 cca   TRUE 0.892 -7.000 0.126 1.000 N NA
 3426891 3426892 BPUM_1977 BPUM_1978   ypjG TRUE 0.840 3.000 0.210 NA   NA
 3426892 3426893 BPUM_1978 BPUM_1979 ypjG mgsA TRUE 0.771 -13.000 0.081 NA   NA
 3426893 3426894 BPUM_1979 BPUM_1980 mgsA dapB TRUE 0.861 18.000 0.044 0.038 N NA
 3426894 3426895 BPUM_1980 BPUM_1981 dapB ypjD TRUE 0.627 6.000 0.044 NA   NA
 3426897 3426898 BPUM_1983 BPUM_1984 ypjB ypjA TRUE 0.693 66.000 0.309 NA   NA
 3426898 3426899 BPUM_1984 BPUM_1985 ypjA qcrC FALSE 0.228 138.000 0.069 NA   NA
 3426899 3426900 BPUM_1985 BPUM_1986 qcrC qcrB TRUE 0.716 43.000 0.095 0.033   NA
 3426900 3426901 BPUM_1986 BPUM_1987 qcrB qcrA TRUE 0.942 3.000 0.447 0.033   NA
 3426901 3426902 BPUM_1987 BPUM_1988 qcrA ypiF FALSE 0.555 145.000 0.540 NA   NA
 3426902 3426903 BPUM_1988 BPUM_1989 ypiF ypiB TRUE 0.796 62.000 0.583 NA   NA
 3426903 3426904 BPUM_1989 BPUM_1990 ypiB ypiA TRUE 0.677 76.000 0.375 NA   NA
 3426904 3426905 BPUM_1990 BPUM_1991 ypiA aroE FALSE 0.048 265.000 0.002 1.000 N NA
 3426905 3426906 BPUM_1991 BPUM_1992 aroE tyrA TRUE 0.955 11.000 0.069 1.000 Y NA
 3426906 3426907 BPUM_1992 BPUM_1993 tyrA hisC TRUE 0.855 75.000 0.080 1.000 Y NA
 3426907 3426908 BPUM_1993 BPUM_1994 hisC trpA TRUE 0.938 11.000 0.017 1.000 Y NA
 3426908 3426909 BPUM_1994 BPUM_1995 trpA trpB TRUE 0.985 -3.000 0.248 0.001 Y NA
 3426909 3426910 BPUM_1995 BPUM_1996 trpB trpF TRUE 0.991 -19.000 0.375 0.001 Y NA
 3426910 3426911 BPUM_1996 BPUM_1997 trpF trpC TRUE 0.985 6.000 0.264 0.001 Y NA
 3426911 3426912 BPUM_1997 BPUM_1998 trpC trpD TRUE 0.976 -7.000 0.216 1.000 Y NA
 3426912 3426913 BPUM_1998 BPUM_1999 trpD trpE TRUE 0.977 -28.000 0.032 0.001 Y NA
 3426913 3426914 BPUM_1999 BPUM_2000 trpE aroH FALSE 0.262 233.000 0.006 1.000 Y NA
 3426914 3426915 BPUM_2000 BPUM_2001 aroH aroB TRUE 0.950 -3.000 0.041 1.000 Y NA
 3426915 3426916 BPUM_2001 BPUM_2002 aroB aroF TRUE 0.977 0.000 0.110 0.001 Y NA
 3426916 3426917 BPUM_2002 BPUM_2003 aroF cheR FALSE 0.466 74.000 0.017 1.000 N NA
 3426917 3426918 BPUM_2003 BPUM_2004 cheR ndk FALSE 0.284 145.000 0.023 1.000 N NA
 3426918 3426919 BPUM_2004 BPUM_2005 ndk hepT FALSE 0.393 131.000 0.054 1.000 N NA
 3426919 3426920 BPUM_2005 BPUM_2006 hepT menH TRUE 0.974 25.000 0.476 1.000 Y NA
 3426920 3426921 BPUM_2006 BPUM_2007 menH hepS TRUE 0.938 4.000 0.708 1.000   NA
 3426921 3426922 BPUM_2007 BPUM_2008 hepS mtrB FALSE 0.509 115.000 0.245 1.000   NA
 3426922 3426923 BPUM_2008 BPUM_2009 mtrB folE TRUE 0.615 55.000 0.130 1.000   NA
 3426923 3426924 BPUM_2009 BPUM_2010 folE hbs FALSE 0.271 191.000 0.154 1.000 N NA
 3426924 3426925 BPUM_2010 BPUM_2011 hbs spoIVA FALSE 0.000 375.000 0.000 NA   NA
 3426925 3426926 BPUM_2011 BPUM_2012 spoIVA yphF FALSE 0.088 205.000 0.081 NA   NA
 3426926 3426927 BPUM_2012 BPUM_2013 yphF yphE TRUE 0.927 18.000 0.771 NA   NA
 3426927 3426928 BPUM_2013 BPUM_2014 yphE gpsA FALSE 0.020 266.000 0.021 NA   NA
 3426928 3426929 BPUM_2014 BPUM_2015 gpsA yphC TRUE 0.743 15.000 0.068 1.000   NA
 3426929 3426930 BPUM_2015 BPUM_2016 yphC   FALSE 0.076 160.000 0.014 NA   NA
 3426930 3426931 BPUM_2016 BPUM_2017   seaA TRUE 0.925 7.000 0.633 NA   NA
 3426931 3426932 BPUM_2017 BPUM_2018 seaA yphA TRUE 0.922 -3.000 0.567 NA   NA
 3426934 3426935 BPUM_2020 BPUM_2021 fni rpsA TRUE 0.833 15.000 0.061 1.000 N NA
 3426935 3426936 BPUM_2021 BPUM_2022 rpsA cmk FALSE 0.110 224.000 0.047 1.000 N NA
 3426936 3426937 BPUM_2022 BPUM_2023 cmk ypfB FALSE 0.218 72.000 0.016 NA   NA
 3426937 3426938 BPUM_2023 BPUM_2024 ypfB ypfA FALSE 0.494 64.000 0.103 NA   NA
 3426938 3426939 BPUM_2024 BPUM_2025 ypfA ypeB FALSE 0.471 102.000 0.205 NA   NA
 3426939 3426940 BPUM_2025 BPUM_2026 ypeB sleB TRUE 0.905 17.000 0.408 1.000   NA
 3426940 3426941 BPUM_2026 BPUM_2027 sleB ypdC FALSE 0.364 129.000 0.157 NA   NA
 3426941 3426942 BPUM_2027 BPUM_2028 ypdC ypdA FALSE 0.085 155.000 0.017 NA   NA
 3426942 3426943 BPUM_2028 BPUM_2029 ypdA gudB FALSE 0.569 123.000 0.083 0.035 N NA
 3426943 3426944 BPUM_2029 BPUM_2030 gudB ypbH FALSE 0.282 195.000 0.222 NA N NA
 3426944 3426945 BPUM_2030 BPUM_2031 ypbH ypbG FALSE 0.271 166.000 0.194 NA   NA
 3426945 3426946 BPUM_2031 BPUM_2032 ypbG ypbF FALSE 0.274 149.000 0.133 NA   NA
 3426946 3426947 BPUM_2032 BPUM_2033 ypbF ypbE TRUE 0.588 65.000 0.176 NA   NA
 3426947 3426948 BPUM_2033 BPUM_2034 ypbE ypbD TRUE 0.891 -55.000 0.222 NA   NA
 3426948 3426949 BPUM_2034 BPUM_2035 ypbD recQ TRUE 0.653 -3.000 0.048 NA   NA
 3426949 3426950 BPUM_2035 BPUM_2036 recQ ypbB TRUE 0.927 -7.000 0.508 NA   NA
 3426954 3426955 BPUM_2040 BPUM_2041   rsiX FALSE 0.351 101.000 0.105 NA   NA
 3426955 3426956 BPUM_2041 BPUM_2042 rsiX sigX TRUE 0.958 -22.000 0.917 NA   NA
 3426956 3426957 BPUM_2042 BPUM_2043 sigX   FALSE 0.009 111.000 0.000 NA   NA
 3426957 3426958 BPUM_2043 BPUM_2044   resE FALSE 0.012 86.000 0.000 NA   NA
 3426958 3426959 BPUM_2044 BPUM_2045 resE resD TRUE 0.988 -3.000 0.511 0.073 Y NA
 3426959 3426960 BPUM_2045 BPUM_2046 resD resC TRUE 0.643 88.000 0.178 1.000 N NA
 3426960 3426961 BPUM_2046 BPUM_2047 resC resB TRUE 0.979 -16.000 0.278 NA Y NA
 3426961 3426962 BPUM_2047 BPUM_2048 resB resA TRUE 0.975 2.000 0.306 NA Y NA
 3426962 3426963 BPUM_2048 BPUM_2049 resA rluB FALSE 0.515 91.000 0.069 1.000 N NA
 3426963 3426964 BPUM_2049 BPUM_2050 rluB spmB TRUE 0.632 27.000 0.063 1.000   NA
 3426964 3426965 BPUM_2050 BPUM_2051 spmB spmA TRUE 0.960 5.000 0.655 0.002   NA
 3426965 3426966 BPUM_2051 BPUM_2052 spmA dacB TRUE 0.900 -12.000 0.252 1.000   NA
 3426966 3426967 BPUM_2052 BPUM_2053 dacB ypuI FALSE 0.214 106.000 0.043 NA   NA
 3426967 3426968 BPUM_2053 BPUM_2054 ypuI scpB FALSE 0.114 114.000 0.009 NA   NA
 3426968 3426969 BPUM_2054 BPUM_2055 scpB scpA TRUE 0.933 -10.000 0.570 NA   NA
 3426970 3426971 BPUM_2056 BPUM_2057   ypuF FALSE 0.159 88.000 0.012 NA   NA
 3426972 3426973 BPUM_2058 BPUM_2059 ribT ribH FALSE 0.159 114.000 0.008 1.000   NA
 3426973 3426974 BPUM_2059 BPUM_2060 ribH ribA TRUE 0.942 28.000 0.034 0.003 Y NA
 3426974 3426975 BPUM_2060 BPUM_2061 ribA ribE TRUE 0.946 12.000 0.040 1.000 Y NA
 3426975 3426976 BPUM_2061 BPUM_2062 ribE ypuD FALSE 0.000 501.000 0.000 NA   NA
 3426976 3426977 BPUM_2062 BPUM_2063 ypuD   FALSE 0.002 225.000 0.000 NA   NA
 3426977 3426978 BPUM_2063 BPUM_2064   yezE FALSE 0.002 213.000 0.000 NA   NA
 3426982 3426983 BPUM_2068 BPUM_2069 lysA