MicrobesOnline Operon Predictions for Campylobacter upsaliensis RM3195

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 2323696 2323697 CUP0606 CUP0607     TRUE 0.798 10.000 0.000 NA   NA
 2323697 2323698 CUP0607 CUP0608     TRUE 0.968 0.000 0.092 1.000   NA
 2323699 2323700 CUP0609 CUP0610     TRUE 0.938 -7.000 0.019 1.000 N NA
 2323703 2323704 CUP0613 CUP0614     TRUE 0.820 2.000 0.000 NA   NA
 2323704 2323705 CUP0614 CUP0615   abcT3 FALSE 0.088 63.000 0.000 NA   NA
 2323705 2323706 CUP0615 CUP0616 abcT3   TRUE 0.993 -3.000 0.306 1.000 Y NA
 2323706 2323707 CUP0616 CUP0617     TRUE 0.990 -13.000 0.257 1.000 Y NA
 2323707 2323708 CUP0617 CUP0618     TRUE 0.991 2.000 0.200 1.000 Y NA
 2323708 2323709 CUP0618 CUP0619     TRUE 0.979 10.000 0.056 1.000 Y NA
 2323710 2323711 CUP_tRNA-Arg-1 CUP0621   tgt FALSE 0.232 37.000 0.000 NA   NA
 2323713 2323714 CUP0623 CUP0624   atoE FALSE 0.082 66.000 0.000 NA   NA
 2323714 2323715 CUP0624 CUP0625 atoE atoE TRUE 0.930 -21.000 0.038 0.002   NA
 2323715 2323716 CUP0625 CUP0626 atoE   FALSE 0.030 162.000 0.000 NA   NA
 2323716 2323717 CUP0626 CUP0627     FALSE 0.031 145.000 0.000 NA   NA
 2323717 2323718 CUP0627 CUP0628   scoA FALSE 0.044 234.000 0.000 0.002   NA
 2323718 2323719 CUP0628 CUP0629 scoA b2224 TRUE 0.844 4.000 0.000 NA   NA
 2323719 2323720 CUP0629 CUP0630 b2224 atoB TRUE 0.514 16.000 0.000 NA   NA
 2323720 2323721 CUP0630 CUP0631 atoB dnaX FALSE 0.025 214.000 0.000 NA N NA
 2323721 2323722 CUP0631 CUP0632 dnaX rho TRUE 0.927 4.000 0.009 1.000 N NA
 2323723 2323724 CUP0633 CUP0634 fixI   TRUE 0.997 -3.000 0.713 NA Y NA
 2323726 2323727 CUP0636 CUP0637   rfaD TRUE 0.967 -9.000 0.093 1.000 N NA
 2323727 2323728 CUP0637 CUP0638 rfaD   TRUE 0.989 -7.000 0.096 0.014 Y NA
 2323728 2323729 CUP0638 CUP0639     TRUE 0.929 -3.000 0.000 1.000 Y NA
 2323730 2323731 CUP0640 CUP0641 lpxD dnaB TRUE 0.792 10.000 0.000 1.000 N NA
 2323732 2323733 CUP0642 CUP0643     FALSE 0.050 91.000 0.000 NA   NA
 2323733 2323734 CUP0643 CUP0644     FALSE 0.028 199.000 0.000 NA   NA
 2323734 2323735 CUP0644 CUP0645     TRUE 0.812 0.000 0.000 NA   NA
 2323735 2323736 CUP0645 CUP0646     TRUE 0.809 -3.000 0.000 NA   NA
 2323737 2323738 CUP0647 CUP0648     FALSE 0.259 34.000 0.000 NA   NA
 2323739 2323740 CUP0649 CUP0650     TRUE 0.992 12.000 1.000 NA   NA
 2323740 2323741 CUP0650 CUP0651     TRUE 0.994 10.000 0.750 NA   NA
 2323742 2323743 CUP0652 CUP_tRNA-Ile-1     FALSE 0.051 90.000 0.000 NA   NA
 2323743 2323744 CUP_tRNA-Ile-1 CUP_tRNA-Ala-1     TRUE 0.846 8.000 0.000 NA   NA
 2323744 2323745 CUP_tRNA-Ala-1 CUP_Cu16SA   rrsA FALSE 0.037 114.000 0.000 NA   NA
 2323745 2323746 CUP_Cu16SA CUP0656 rrsA ftsK FALSE 0.024 334.000 0.000 NA   NA
 2323746 2323747 CUP0656 CUP0657 ftsK   FALSE 0.281 109.000 0.145 1.000   NA
 2323748 2323749 CUP_tRNA-Leu-2 CUP0659   murA FALSE 0.027 214.000 0.000 NA   NA
 2323749 2323750 CUP0659 CUP0660 murA moeA-3 TRUE 0.941 -3.000 0.024 1.000 N NA
 2323750 2323751 CUP0660 CUP0661 moeA-3   FALSE 0.029 162.000 0.000 1.000 N NA
 2323751 2323752 CUP0661 CUP_tRNA-Gly-1     FALSE 0.084 65.000 0.000 NA   NA
 2323752 2323753 CUP_tRNA-Gly-1 CUP0663     FALSE 0.461 20.000 0.000 NA   NA
 2323754 2323755 CUP0664 CUP0665 hag   TRUE 0.831 30.000 0.172 1.000   NA
 2323755 2323756 CUP0665 CUP0666   prfB TRUE 0.828 2.000 0.000 1.000   NA
 2323756 2323757 CUP0666 CUP0667 prfB   FALSE 0.068 77.000 0.000 1.000   NA
 2323757 2323758 CUP0667 CUP0668   ychF FALSE 0.082 68.000 0.000 1.000   NA
 2323758 2323759 CUP0668 CUP0669 ychF pepA TRUE 0.943 -3.000 0.026 1.000 N NA
 2323759 2323760 CUP0669 CUP0670 pepA   TRUE 0.984 -3.000 0.250 NA   NA
 2323760 2323761 CUP0670 CUP0671   apt TRUE 0.953 9.000 0.026 NA   NA
 2323761 2323762 CUP0671 CUP0672 apt   FALSE 0.023 329.000 0.000 1.000 N NA
 2323762 2323763 CUP0672 CUP0673   aspB FALSE 0.065 75.000 0.000 1.000 N NA
 2323763 2323764 CUP0673 CUP0674 aspB   FALSE 0.088 63.000 0.000 NA   NA
 2323764 2323765 CUP0674 CUP0675     TRUE 0.812 0.000 0.000 NA   NA
 2323765 2323766 CUP0675 CUP0676   fliM TRUE 0.991 -3.000 0.142 0.003 Y NA
 2323766 2323767 CUP0676 CUP0677 fliM fliA TRUE 0.972 0.000 0.118 1.000 N NA
 2323767 2323768 CUP0677 CUP0678 fliA   TRUE 0.936 -22.000 0.112 NA   NA
 2323768 2323769 CUP0678 CUP0679     TRUE 0.976 10.000 0.159 NA   NA
 2323769 2323770 CUP0679 CUP0680     TRUE 0.989 -7.000 0.382 1.000 N NA
 2323770 2323771 CUP0680 CUP0681   folK TRUE 0.859 -31.000 0.035 1.000 N NA
 2323771 2323772 CUP0681 CUP0682 folK aroQ TRUE 0.915 -7.000 0.009 1.000 N NA
 2323773 2323774 CUP0683 CUP0684 orf1 sppA TRUE 0.940 -12.000 0.035 1.000 N NA
 2323774 2323775 CUP0684 CUP0685 sppA   FALSE 0.178 64.000 0.009 NA   NA
 2323776 2323777 CUP0686 CUP0687     TRUE 0.524 -64.000 0.000 NA   NA
 2323777 2323778 CUP0687 CUP0688     FALSE 0.200 41.000 0.000 NA   NA
 2323778 2323779 CUP0688 CUP0689     TRUE 0.995 -19.000 0.667 0.011 Y NA
 2323779 2323780 CUP0689 CUP0690     FALSE 0.107 153.000 0.022 1.000   NA
 2323780 2323781 CUP0690 CUP0691     TRUE 0.988 -7.000 0.209 0.002   NA
 2323781 2323782 CUP0691 CUP0692   glcF TRUE 0.997 -3.000 0.657 1.000 Y NA
 2323782 2323783 CUP0692 CUP0693 glcF lldP_1 TRUE 0.982 10.000 0.075 1.000 Y NA
 2323784 2323785 CUP0694 CUP0695     TRUE 0.809 -3.000 0.000 NA   NA
 2323785 2323786 CUP0695 CUP0696   trmU TRUE 0.773 -34.000 0.012 NA   NA
 2323787 2323788 CUP0697 CUP0698   map TRUE 0.525 15.000 0.000 1.000 N NA
 2323788 2323789 CUP0698 CUP0699 map murI TRUE 0.675 16.000 0.005 1.000 N NA
 2323789 2323790 CUP0699 CUP0700 murI   TRUE 0.864 14.000 0.005 NA Y NA
 2323790 2323791 CUP0700 CUP0701   nhaA TRUE 0.934 -51.000 0.211 NA N NA
 2323791 2323792 CUP0701 CUP0702 nhaA nhaA TRUE 0.997 -3.000 0.571 0.005 Y NA
 2323792 2323793 CUP0702 CUP0703 nhaA   FALSE 0.041 106.000 0.000 NA   NA
 2323793 2323794 CUP0703 CUP0704   moeZ FALSE 0.069 73.000 0.000 NA   NA
 2323794 2323795 CUP0704 CUP0705 moeZ thiS TRUE 0.987 -3.000 0.346 1.000   NA
 2323795 2323796 CUP0705 CUP0706 thiS   FALSE 0.370 58.000 0.043 1.000   NA
 2323796 2323797 CUP0706 CUP0707   dapE TRUE 0.894 10.000 0.005 1.000   NA
 2323797 2323798 CUP0707 CUP0708 dapE   TRUE 0.946 4.000 0.018 1.000   NA
 2323798 2323799 CUP0708 CUP0709     TRUE 0.992 8.000 0.417 1.000   NA
 2323800 2323801 CUP0710 CUP0711     TRUE 0.981 -3.000 0.207 1.000 N NA
 2323801 2323802 CUP0711 CUP0712     TRUE 0.998 1.000 0.844 NA Y NA
 2323803 2323804 CUP0713 CUP0714   comEA FALSE 0.340 27.000 0.000 NA   NA
 2323804 2323805 CUP0714 CUP0715 comEA   FALSE 0.069 73.000 0.000 NA   NA
 2323805 2323806 CUP0715 CUP0716     TRUE 0.952 -3.000 0.040 NA   NA
 2323808 2323809 CUP0718 CUP0719   mfd TRUE 0.950 10.000 0.002 1.000 Y NA
 2323809 2323810 CUP0719 CUP0720 mfd   TRUE 0.939 0.000 0.023 NA N NA
 2323810 2323811 CUP0720 CUP0721     TRUE 0.962 -60.000 0.178 NA Y NA
 2323811 2323812 CUP0721 CUP0722   folC TRUE 0.945 -10.000 0.032 1.000 N NA
 2323812 2323813 CUP0722 CUP0723 folC   TRUE 0.961 -13.000 0.104 1.000   NA
 2323813 2323814 CUP0723 CUP0724     TRUE 0.984 -16.000 0.455 NA   NA
 2323814 2323815 CUP0724 CUP0725   leuS TRUE 0.949 -3.000 0.031 NA   NA
 2323815 2323816 CUP0725 CUP0726 leuS   TRUE 0.895 10.000 0.008 1.000 N NA
 2323816 2323817 CUP0726 CUP0727   secD TRUE 0.996 0.000 0.436 0.002 Y NA
 2323817 2323818 CUP0727 CUP0728 secD yajC TRUE 0.984 -7.000 0.068 NA Y NA
 2323820 2323821 CUP0730 CUP0731   ribF TRUE 0.978 -10.000 0.051 1.000 Y NA
 2323821 2323822 CUP0731 CUP0732 ribF tly TRUE 0.841 -34.000 0.029 1.000 N NA
 2323822 2323823 CUP0732 CUP0733 tly ligA TRUE 0.921 0.000 0.014 1.000 N NA
 2323823 2323824 CUP0733 CUP0734 ligA folP TRUE 0.898 -3.000 0.006 1.000 N NA
 2323824 2323825 CUP0734 CUP0735 folP   TRUE 0.958 -3.000 0.054 1.000   NA
 2323825 2323826 CUP0735 CUP0736     TRUE 0.957 0.000 0.053 NA   NA
 2323826 2323827 CUP0736 CUP0737     TRUE 0.955 -3.000 0.050 NA   NA
 2323827 2323828 CUP0737 CUP0738   mutT TRUE 0.956 0.000 0.051 1.000 N NA
 2323830 2323831 CUP0740 CUP0741     TRUE 0.848 7.000 0.000 NA   NA
 2323833 2323834 CUP0743 CUP0744 trxB   FALSE 0.093 72.000 0.000 0.049 N NA
 2323834 2323835 CUP0744 CUP0745     TRUE 0.868 -3.000 0.000 0.022   NA
 2323835 2323836 CUP0745 CUP0746     FALSE 0.350 34.000 0.000 0.022   NA
 2323836 2323837 CUP0746 CUP0747     TRUE 0.805 -10.000 0.000 1.000   NA
 2323837 2323838 CUP0747 CUP0748   ybjZ TRUE 0.978 2.000 0.152 1.000 N NA
 2323838 2323839 CUP0748 CUP0749 ybjZ   TRUE 0.986 0.000 0.258 0.099 N NA
 2323839 2323840 CUP0749 CUP0750   panD FALSE 0.123 54.000 0.000 1.000 N NA
 2323840 2323841 CUP0750 CUP0751 panD hemG FALSE 0.252 34.000 0.000 1.000 N NA
 2323841 2323842 CUP0751 CUP0752 hemG   TRUE 0.961 -3.000 0.068 1.000 N NA
 2323842 2323843 CUP0752 CUP0753     TRUE 0.538 -52.000 0.000 NA   NA
 2323843 2323844 CUP0753 CUP0754     TRUE 0.620 -25.000 0.000 NA   NA
 2323844 2323845 CUP0754 CUP0755     TRUE 0.980 -13.000 0.280 1.000   NA
 2323845 2323846 CUP0755 CUP0756   algI TRUE 0.984 0.000 0.244 NA   NA
 2323846 2323847 CUP0756 CUP0757 algI pfr TRUE 0.743 24.000 0.047 NA N NA
 2323848 2323849 CUP0758 CUP0759     FALSE 0.223 38.000 0.000 NA   NA
 2323849 2323850 CUP0759 CUP0760   aroB FALSE 0.241 37.000 0.000 1.000   NA
 2323850 2323851 CUP0760 CUP0761 aroB   TRUE 0.952 -3.000 0.041 1.000 N NA
 2323851 2323852 CUP0761 CUP0762     TRUE 0.963 -7.000 0.063 1.000 N NA
 2323852 2323853 CUP0762 CUP0763   ftsH_1 TRUE 0.961 0.000 0.067 1.000 N NA
 2323853 2323854 CUP0763 CUP0764 ftsH_1 thiD TRUE 0.709 11.000 0.000 1.000 N NA
 2323854 2323855 CUP0764 CUP0765 thiD thiE TRUE 0.989 -7.000 0.079 0.005 Y NA
 2323855 2323856 CUP0765 CUP0766 thiE hemD TRUE 0.949 -22.000 0.032 1.000 Y NA
 2323857 2323858 CUP0767 CUP0768   hemE TRUE 0.927 -3.000 0.017 1.000 N NA
 2323858 2323859 CUP0768 CUP0769 hemE   FALSE 0.472 18.000 0.000 1.000 N NA
 2323859 2323860 CUP0769 CUP0770     FALSE 0.045 98.000 0.000 1.000 N NA
 2323860 2323861 CUP0770 CUP0771     TRUE 0.885 -6.000 0.000 0.027   NA
 2323861 2323862 CUP0771 CUP0772     TRUE 0.796 -10.000 0.000 NA   NA
 2323862 2323863 CUP0772 CUP0773     TRUE 0.553 -37.000 0.000 NA   NA
 2323863 2323864 CUP0773 CUP0774   secA FALSE 0.280 32.000 0.000 NA   NA
 2323866 2323867 CUP0776 CUP0777     TRUE 0.977 13.000 0.529 NA   NA
 2323870 2323871 CUP0780 CUP0781     TRUE 0.760 -13.000 0.000 NA   NA
 2323872 2323873 CUP0782 CUP0783   mraW FALSE 0.182 94.000 0.031 NA   NA
 2323874 2323875 CUP0784 CUP0785   ftsA TRUE 0.967 11.000 0.184 1.000   NA
 2323876 2323877 CUP0786 CUP0787 lysA   TRUE 0.899 11.000 0.021 1.000   NA
 2323877 2323878 CUP0787 CUP0788   pth TRUE 0.957 3.000 0.031 1.000   NA
 2323878 2323879 CUP0788 CUP0789 pth   TRUE 0.996 -3.000 0.496 0.049 Y NA
 2323879 2323880 CUP0789 CUP0790   tal FALSE 0.258 58.000 0.017 1.000 N NA
 2323880 2323881 CUP0790 CUP0791 tal serB TRUE 0.947 0.000 0.029 1.000 N NA
 2323881 2323882 CUP0791 CUP0792 serB cheW TRUE 0.923 0.000 0.015 1.000 N NA
 2323882 2323883 CUP0792 CUP0793 cheW cheA TRUE 0.993 4.000 0.137 0.015 Y NA
 2323883 2323884 CUP0793 CUP0794 cheA   TRUE 0.993 4.000 0.147 0.008 Y NA
 2323884 2323885 CUP0794 CUP0795     TRUE 0.880 14.000 0.065 NA   NA
 2323885 2323886 CUP0795 CUP0796     TRUE 0.920 0.000 0.012 NA   NA
 2323886 2323887 CUP0796 CUP0797   lpxB TRUE 0.948 10.000 0.042 1.000 N NA
 2323887 2323888 CUP0797 CUP0798 lpxB   TRUE 0.817 -3.000 0.000 1.000   NA
 2323888 2323889 CUP0798 CUP0799     TRUE 0.880 -7.000 0.000 0.016   NA
 2323889 2323890 CUP0799 CUP0800   res TRUE 0.994 -10.000 0.667 0.077 N NA
 2323893 2323894 CUP0803 CUP0804 surE   TRUE 0.960 2.000 0.051 1.000   NA
 2323894 2323895 CUP0804 CUP0805     FALSE 0.056 88.000 0.000 1.000   NA
 2323897 2323898 CUP0807 CUP0808 oadA pckA TRUE 0.946 11.000 0.016 1.000 Y NA
 2323898 2323899 CUP0808 CUP0809 pckA argH TRUE 0.898 -3.000 0.006 1.000 N NA
 2323900 2323901 CUP0810 CUP0811 hitA   TRUE 0.609 13.000 0.000 1.000   NA
 2323901 2323902 CUP0811 CUP0812     FALSE 0.022 465.000 0.000 NA   NA
 2323902 2323903 CUP0812 CUP0813     FALSE 0.024 352.000 0.000 NA   NA
 2323903 2323904 CUP0813 CUP0814     FALSE 0.054 88.000 0.000 NA   NA
 2323904 2323905 CUP0814 CUP0815   uvrB FALSE 0.027 215.000 0.000 NA   NA
 2323906 2323907 CUP0816 CUP0817     TRUE 0.994 -10.000 0.714 NA   NA
 2323907 2323908 CUP0817 CUP0818     TRUE 0.969 -22.000 0.316 NA   NA
 2323908 2323909 CUP0818 CUP0819   priA TRUE 0.920 -3.000 0.016 NA N NA
 2323909 2323910 CUP0819 CUP0820 priA aat TRUE 0.792 10.000 0.000 1.000 N NA
 2323910 2323911 CUP0820 CUP0821 aat   FALSE 0.028 162.000 0.000 NA N NA
 2323911 2323912 CUP0821 CUP0822   grpE TRUE 0.949 -3.000 0.038 NA N NA
 2323912 2323913 CUP0822 CUP0823 grpE   TRUE 0.913 20.000 0.029 0.011 Y NA
 2323913 2323914 CUP0823 CUP0824     FALSE 0.054 90.000 0.000 1.000   NA
 2323914 2323915 CUP0824 CUP0825     TRUE 0.993 0.000 0.538 1.000   NA
 2323915 2323916 CUP0825 CUP0826     FALSE 0.258 115.000 0.143 1.000 N NA
 2323916 2323917 CUP0826 CUP0827   glnH TRUE 0.979 23.000 0.594 1.000 Y NA
 2323917 2323918 CUP0827 CUP0828 glnH glnP TRUE 0.996 2.000 0.400 0.033 Y NA
 2323918 2323919 CUP0828 CUP0829 glnP   TRUE 0.999 3.000 0.947 0.014 Y NA
 2323919 2323920 CUP0829 CUP0830   prsA FALSE 0.399 77.000 0.029 1.000 Y NA
 2323920 2323921 CUP0830 CUP0831 prsA nadE TRUE 0.913 2.000 0.009 1.000 N NA
 2323921 2323922 CUP0831 CUP0832 nadE lpxK TRUE 0.909 0.000 0.009 1.000 N NA
 2323922 2323923 CUP0832 CUP0833 lpxK thrC TRUE 0.881 -13.000 0.009 1.000 N NA
 2323923 2323924 CUP0833 CUP0834 thrC kdsB TRUE 0.927 -3.000 0.017 1.000 N NA
 2323924 2323925 CUP0834 CUP0835 kdsB   TRUE 0.760 -13.000 0.000 NA   NA
 2323925 2323926 CUP0835 CUP0836   ftsZ TRUE 0.597 13.000 0.000 NA   NA
 2323927 2323928 CUP0837 CUP0838     TRUE 0.803 -61.000 0.022 1.000   NA
 2323928 2323929 CUP0838 CUP0839     TRUE 0.927 0.000 0.016 NA   NA
 2323929 2323930 CUP0839 CUP0840   accC TRUE 0.989 0.000 0.400 NA   NA
 2323931 2323932 CUP0841 CUP0842 ftsW murG TRUE 0.993 -3.000 0.647 1.000 N NA
 2323933 2323934 CUP0843 CUP0844     TRUE 0.989 0.000 0.400 NA   NA
 2323934 2323935 CUP0844 CUP0845   livF TRUE 0.986 1.000 0.280 1.000 N NA
 2323935 2323936 CUP0845 CUP0846 livF livG TRUE 0.994 -13.000 0.381 0.020 Y NA
 2323936 2323937 CUP0846 CUP0847 livG livM TRUE 0.991 -3.000 0.200 1.000 Y NA
 2323937 2323938 CUP0847 CUP0848 livM livH TRUE 0.998 0.000 0.771 0.033 Y NA
 2323938 2323939 CUP0848 CUP0849 livH livJ TRUE 0.933 17.000 0.085 NA Y NA
 2323939 2323940 CUP0849 CUP0850 livJ livJ TRUE 0.999 8.000 1.000 NA Y NA
 2323940 2323941 CUP0850 CUP0851 livJ   FALSE 0.374 121.000 0.312 NA   NA
 2323941 2323942 CUP0851 CUP0852     TRUE 0.963 12.000 0.250 NA   NA
 2323942 2323943 CUP0852 CUP0853     FALSE 0.443 54.000 0.062 NA   NA
 2323943 2323944 CUP0853 CUP0854   asd TRUE 0.944 0.000 0.025 NA   NA
 2323944 2323945 CUP0854 CUP0855 asd rrp-2 TRUE 0.956 6.000 0.025 1.000 N NA
 2323946 2323947 CUP0856 CUP0857 ruvB   TRUE 0.942 3.000 0.019 NA   NA
 2323947 2323948 CUP0857 CUP0858     FALSE 0.066 76.000 0.000 NA   NA
 2323948 2323949 CUP0858 CUP0859   ruvA TRUE 0.782 -24.000 0.004 1.000   NA
 2323949 2323950 CUP0859 CUP0860 ruvA   TRUE 0.872 11.000 0.014 1.000 N NA
 2323950 2323951 CUP0860 CUP0861     TRUE 0.931 0.000 0.018 NA   NA
 2323951 2323952 CUP0861 CUP0862     TRUE 0.959 2.000 0.052 NA   NA
 2323952 2323953 CUP0862 CUP0863   murF TRUE 0.971 -10.000 0.129 NA   NA
 2323953 2323954 CUP0863 CUP0864 murF   FALSE 0.092 62.000 0.000 NA   NA
 2323954 2323955 CUP0864 CUP0865     TRUE 0.992 1.000 0.514 NA   NA
 2323955 2323956 CUP0865 CUP0866   ispB TRUE 0.951 2.000 0.030 NA   NA
 2323956 2323957 CUP0866 CUP0867 ispB hemA TRUE 0.980 0.000 0.051 1.000 Y NA
 2323957 2323958 CUP0867 CUP0868 hemA proS TRUE 0.957 -10.000 0.040 0.056 N NA
 2323958 2323959 CUP0868 CUP0869 proS   TRUE 0.892 -3.000 0.002 1.000   NA
 2323959 2323960 CUP0869 CUP0870   drrA FALSE 0.025 327.000 0.000 1.000   NA
 2323960 2323961 CUP0870 CUP0871 drrA   TRUE 0.995 -3.000 0.448 1.000 Y NA
 2323961 2323962 CUP0871 CUP0872   recR TRUE 0.908 -10.000 0.011 1.000 N NA
 2323963 2323964 CUP0873 CUP0874     TRUE 0.996 0.000 0.844 NA   NA
 2323965 2323966 CUP0875 CUP0876 hemC   TRUE 0.961 -3.000 0.009 NA Y NA
 2323966 2323967 CUP0876 CUP0877     FALSE 0.166 78.000 0.018 NA N NA
 2323967 2323968 CUP0877 CUP0878     TRUE 0.985 2.000 0.092 NA Y NA
 2323968 2323969 CUP0878 CUP0879   fliS TRUE 0.997 10.000 0.608 0.005 Y NA
 2323969 2323970 CUP0879 CUP0880 fliS   TRUE 0.941 -13.000 0.051 NA   NA
 2323972 2323973 CUP0882 CUP0883     TRUE 0.796 -10.000 0.000 NA   NA
 2323973 2323974 CUP0883 CUP0884     TRUE 0.514 16.000 0.000 NA   NA
 2323974 2323975 CUP0884 CUP0885   efp FALSE 0.121 55.000 0.000 NA   NA
 2323975 2323976 CUP0885 CUP0886 efp uvrA TRUE 0.807 0.000 0.000 1.000 N NA
 2323976 2323977 CUP0886 CUP0887 uvrA   TRUE 0.809 -3.000 0.000 NA   NA
 2323977 2323978 CUP0887 CUP0888     TRUE 0.826 -7.000 0.000 NA   NA
 2323979 2323980 CUP0889 CUP_tRNA-Ile-2     FALSE 0.051 90.000 0.000 NA   NA
 2323980 2323981 CUP_tRNA-Ile-2 CUP_tRNA-Ala-2     TRUE 0.846 8.000 0.000 NA   NA
 2323981 2323982 CUP_tRNA-Ala-2 CUP_Cu16SB   rrsB FALSE 0.037 114.000 0.000 NA   NA
 2323982 2323983 CUP_Cu16SB CUP0893 rrsB   FALSE 0.024 333.000 0.000 NA   NA
 2323983 2323984 CUP0893 CUP0894     FALSE 0.340 27.000 0.000 NA   NA
 2323984 2323985 CUP0894 CUP0895     TRUE 0.826 -7.000 0.000 NA   NA
 2323985 2323986 CUP0895 CUP0896     TRUE 0.956 -7.000 0.032 1.000   NA
 2323986 2323987 CUP0896 CUP0897   guaB TRUE 0.906 -3.000 0.007 1.000   NA
 2323987 2323988 CUP0897 CUP0898 guaB gatA TRUE 0.959 4.000 0.032 1.000 N NA
 2323988 2323989 CUP0898 CUP0899 gatA   TRUE 0.904 3.000 0.003 NA   NA
 2323989 2323990 CUP0899 CUP0900   ileS TRUE 0.970 -7.000 0.091 NA   NA
 2323991 2323992 CUP0901 CUP0902 cinA pgsA FALSE 0.064 80.000 0.000 1.000   NA
 2323992 2323993 CUP0902 CUP0903 pgsA   TRUE 0.951 -3.000 0.023 0.062 N NA
 2323993 2323994 CUP0903 CUP0904     FALSE 0.045 98.000 0.000 1.000 N NA
 2323994 2323995 CUP0904 CUP0905   ssb TRUE 0.957 9.000 0.033 1.000 N NA
 2323995 2323996 CUP0905 CUP0906 ssb rpsR TRUE 0.868 13.000 0.034 1.000 N NA
 2323997 2323998 CUP0907 CUP0908     TRUE 0.991 -27.000 1.000 NA   NA
 2323998 2323999 CUP0908 CUP0909   ctsT TRUE 0.992 -16.000 0.800 NA   NA
 2323999 2324000 CUP0909 CUP0910 ctsT proC TRUE 0.963 -3.000 0.075 NA   NA
 2324001 2324002 CUP0911 CUP0912   lon TRUE 0.800 23.000 0.062 1.000   NA
 2324003 2324004 CUP0913 CUP0914     TRUE 0.965 -13.000 0.093 0.044   NA
 2324005 2324006 CUP0915 CUP0916     TRUE 0.760 -13.000 0.000 NA   NA
 2324006 2324007 CUP0916 CUP0917     FALSE 0.127 54.000 0.000 NA   NA
 2324008 2324009 CUP0918 CUP_tRNA-Met-2     FALSE 0.059 82.000 0.000 NA   NA
 2324009 2324010 CUP_tRNA-Met-2 CUP_tRNA-Gln-1     TRUE 0.534 15.000 0.000 NA   NA
 2324011 2324012 CUP0921 CUP0922 ribBA   FALSE 0.023 379.000 0.000 NA   NA
 2324015 2324016 CUP0228 CUP0229   mraY FALSE 0.067 110.000 0.002 1.000 N NA
 2324017 2324018 CUP0230 CUP0231 gpmA fabG FALSE 0.342 50.000 0.018 1.000 N NA
 2324018 2324019 CUP0231 CUP0232 fabG   TRUE 0.831 9.000 0.000 1.000 N NA
 2324019 2324020 CUP0232 CUP0233   pheA TRUE 0.923 -12.000 0.021 1.000 N NA
 2324021 2324022 CUP0234 CUP0235     FALSE 0.031 161.000 0.000 NA   NA
 2324022 2324023 CUP0235 CUP0236     TRUE 0.809 -3.000 0.000 NA   NA
 2324023 2324024 CUP0236 CUP0237     TRUE 0.833 3.000 0.000 NA   NA
 2324025 2324026 CUP0238 CUP0239   purD FALSE 0.026 237.000 0.000 NA   NA
 2324026 2324027 CUP0239 CUP0240 purD   TRUE 0.929 0.000 0.017 NA   NA
 2324027 2324028 CUP0240 CUP0241     TRUE 0.974 -10.000 0.149 NA   NA
 2324028 2324029 CUP0241 CUP0242   pnpA FALSE 0.154 67.000 0.007 1.000 N NA
 2324030 2324031 CUP0243 CUP0244     TRUE 0.812 0.000 0.000 NA   NA
 2324031 2324032 CUP0244 CUP0245     FALSE 0.114 99.000 0.014 1.000 N NA
 2324033 2324034 CUP0246 CUP0247     TRUE 0.954 3.000 0.028 NA   NA
 2324034 2324035 CUP0247 CUP0248   cdsA TRUE 0.895 10.000 0.007 NA   NA
 2324035 2324036 CUP0248 CUP0249 cdsA dxr TRUE 0.994 -3.000 0.372 1.000 Y NA
 2324036 2324037 CUP0249 CUP0250 dxr   TRUE 0.782 -25.000 0.006 1.000   NA
 2324037 2324038 CUP0250 CUP0251     TRUE 0.908 -3.000 0.008 1.000   NA
 2324038 2324039 CUP0251 CUP0252   ctsG TRUE 0.914 9.000 0.005 1.000   NA
 2324039 2324040 CUP0252 CUP0253 ctsG   TRUE 0.809 -3.000 0.000 NA   NA
 2324040 2324041 CUP0253 CUP0254     TRUE 0.548 -39.000 0.000 NA   NA
 2324041 2324042 CUP0254 CUP0255     TRUE 0.796 -10.000 0.000 NA   NA
 2324043 2324044 CUP0256 CUP0257     TRUE 0.952 0.000 0.035 NA   NA
 2324045 2324046 CUP0258 CUP0259 cstA   TRUE 0.961 -22.000 0.229 NA   NA
 2324048 2324049 CUP0261 CUP0262   hup-1 FALSE 0.356 93.000 0.167 1.000   NA
 2324050 2324051 CUP0263 CUP0264     TRUE 0.980 -3.000 0.192 NA   NA
 2324051 2324052 CUP0264 CUP0265     TRUE 0.970 4.000 0.069 NA   NA
 2324053 2324054 CUP0266 CUP0267     TRUE 0.950 0.000 0.031 NA   NA
 2324054 2324055 CUP0267 CUP0268     TRUE 0.894 0.000 0.005 1.000 N NA
 2324055 2324056 CUP0268 CUP0269     FALSE 0.096 101.000 0.009 1.000 N NA
 2324057 2324058 CUP0270 CUP0271   serA FALSE 0.427 23.000 0.000 1.000   NA
 2324058 2324059 CUP0271 CUP0272 serA   TRUE 0.944 -3.000 0.025 NA   NA
 2324059 2324060 CUP0272 CUP0273     TRUE 0.990 5.000 0.343 NA   NA
 2324060 2324061 CUP0273 CUP0274   licD FALSE 0.040 102.000 0.000 NA N NA
 2324061 2324062 CUP0274 CUP0275 licD licC TRUE 0.985 -12.000 0.133 NA Y NA
 2324062 2324063 CUP0275 CUP0276 licC licB TRUE 0.820 0.000 0.000 1.000   NA
 2324063 2324064 CUP0276 CUP0277 licB licA TRUE 0.809 -3.000 0.000 NA   NA
 2324064 2324065 CUP0277 CUP0278 licA ispH TRUE 0.927 -9.000 0.000 NA Y NA
 2324065 2324066 CUP0278 CUP0279 ispH aroA TRUE 0.817 -79.000 0.032 1.000 N NA
 2324066 2324067 CUP0279 CUP0280 aroA   TRUE 0.946 -3.000 0.028 1.000 N NA
 2324067 2324068 CUP0280 CUP0281   pheS TRUE 0.997 -3.000 0.574 0.001 Y NA
 2324069 2324070 CUP0282 CUP0283 thiG   TRUE 0.534 15.000 0.000 NA   NA
 2324070 2324071 CUP0283 CUP0284   hypF TRUE 0.871 -19.000 0.018 NA   NA
 2324071 2324072 CUP0284 CUP0285 hypF   FALSE 0.029 173.000 0.000 NA   NA
 2324074 2324075 CUP0287 CUP0288     FALSE 0.132 53.000 0.000 NA   NA
 2324075 2324076 CUP0288 CUP0289     FALSE 0.022 1095.000 0.000 NA   NA
 2324077 2324078 CUP0290 CUP0291 hypA hypE TRUE 0.966 0.000 0.080 1.000   NA
 2324079 2324080 CUP0292 CUP0293 hypB hypC TRUE 0.995 0.000 0.463 NA Y NA
 2324080 2324081 CUP0293 CUP0294 hypC hypD TRUE 0.978 -16.000 0.123 NA Y NA
 2324081 2324082 CUP0294 CUP0295 hypD   FALSE 0.364 25.000 0.000 NA   NA
 2324082 2324083 CUP0295 CUP0296     TRUE 0.974 12.000 0.385 NA   NA
 2324083 2324084 CUP0296 CUP0297     FALSE 0.053 91.000 0.000 1.000   NA
 2324084 2324085 CUP0297 CUP0298   pyrB TRUE 0.833 11.000 0.005 1.000 N NA
 2324085 2324086 CUP0298 CUP0299 pyrB pepF TRUE 0.900 2.000 0.005 1.000 N NA
 2324086 2324087 CUP0299 CUP0300 pepF   TRUE 0.976 -6.000 0.115 NA   NA
 2324087 2324088 CUP0300 CUP0301   uvrD TRUE 0.945 -3.000 0.026 NA   NA
 2324088 2324089 CUP0301 CUP0302 uvrD   TRUE 0.953 -3.000 0.046 1.000 N NA
 2324089 2324090 CUP0302 CUP0303   csrA TRUE 0.968 -6.000 0.046 0.027 N NA
 2324090 2324091 CUP0303 CUP0304 csrA   TRUE 0.950 -3.000 0.036 1.000 N NA
 2324091 2324092 CUP0304 CUP0305   smpB TRUE 0.946 -3.000 0.028 1.000 N NA
 2324092 2324093 CUP0305 CUP0306 smpB   FALSE 0.030 167.000 0.000 NA   NA
 2324093 2324094 CUP0306 CUP0307     TRUE 0.869 -25.000 0.026 NA   NA
 2324094 2324095 CUP0307 CUP0308     FALSE 0.307 30.000 0.000 NA   NA
 2324095 2324096 CUP0308 CUP0309     TRUE 0.681 -19.000 0.000 NA   NA
 2324097 2324098 CUP0310 CUP0311     TRUE 0.984 -7.000 0.217 NA   NA
 2324098 2324099 CUP0311 CUP0312   clpA TRUE 0.798 10.000 0.000 NA   NA
 2324099 2324100 CUP0312 CUP0313 clpA   TRUE 0.993 -3.000 0.596 NA   NA
 2324100 2324101 CUP0313 CUP0314     TRUE 0.943 0.000 0.024 NA   NA
 2324103 2324104 CUP0316 CUP0317 tlpC-2   TRUE 0.921 12.000 0.077 NA   NA
 2324104 2324105 CUP0317 CUP0318   rpmB FALSE 0.138 69.000 0.004 NA   NA
 2324106 2324107 CUP0319 CUP0320 rpe   TRUE 0.985 -3.000 0.279 1.000 N NA
 2324107 2324108 CUP0320 CUP0321   thiC FALSE 0.067 137.000 0.007 1.000 N NA
 2324108 2324109 CUP0321 CUP0322 thiC   FALSE 0.037 115.000 0.000 NA   NA
 2324110 2324111 CUP0323 CUP0324     TRUE 0.635 -24.000 0.000 NA   NA
 2324111 2324112 CUP0324 CUP0325   hpkA TRUE 0.590 -30.000 0.000 NA   NA
 2324112 2324113 CUP0325 CUP0326 hpkA drrA TRUE 0.997 0.000 0.732 1.000 Y NA
 2324113 2324114 CUP0326 CUP0327 drrA pstB TRUE 0.513 33.000 0.016 1.000 N NA
 2324114 2324115 CUP0327 CUP0328 pstB pstA TRUE 0.997 9.000 0.428 0.004 Y NA
 2324115 2324116 CUP0328 CUP0329 pstA pstC TRUE 0.993 -3.000 0.219 0.004 Y NA
 2324116 2324117 CUP0329 CUP0330 pstC   TRUE 0.827 14.000 0.023 NA   NA
 2324118 2324119 CUP0331 CUP0332     TRUE 0.650 -22.000 0.000 NA   NA
 2324119 2324120 CUP0332 CUP0333     TRUE 0.715 -16.000 0.000 NA   NA
 2324120 2324121 CUP0333 CUP0334     TRUE 0.826 -7.000 0.000 NA   NA
 2324121 2324122 CUP0334 CUP0335   bioD TRUE 0.951 0.000 0.030 1.000   NA
 2324124 2324125 CUP0337 CUP0338 bioF   TRUE 0.989 -3.000 0.389 NA   NA
 2324125 2324126 CUP0338 CUP0339     TRUE 0.941 -15.000 0.065 NA   NA
 2324126 2324127 CUP0339 CUP0340   modA FALSE 0.299 48.000 0.008 1.000   NA
 2324127 2324128 CUP0340 CUP0341 modA   TRUE 0.969 -3.000 0.098 1.000   NA
 2324128 2324129 CUP0341 CUP0342   cysT TRUE 0.976 -7.000 0.122 1.000   NA
 2324129 2324130 CUP0342 CUP0343 cysT modC TRUE 0.994 3.000 0.286 1.000 Y NA
 2324130 2324131 CUP0343 CUP0344 modC   FALSE 0.199 42.000 0.000 1.000   NA
 2324133 2324134 CUP0346 CUP_tRNA-Leu-1     FALSE 0.288 31.000 0.000 NA   NA
 2324136 2324137 CUP0349 CUP0350 pdxJ pdxA TRUE 0.975 -16.000 0.048 0.001 Y NA
 2324137 2324138 CUP0350 CUP0351 pdxA   FALSE 0.144 50.000 0.000 NA   NA
 2324140 2324141 CUP0353 CUP0354   miaB TRUE 0.950 -3.000 0.033 NA   NA
 2324141 2324142 CUP0354 CUP0355 miaB   TRUE 0.914 -16.000 0.029 NA   NA
 2324142 2324143 CUP0355 CUP0356     TRUE 0.991 -3.000 0.462 NA   NA
 2324143 2324144 CUP0356 CUP0357     TRUE 0.996 -10.000 1.000 NA   NA
 2324144 2324145 CUP0357 CUP0358     TRUE 0.989 -10.000 0.448 NA   NA
 2324145 2324146 CUP0358 CUP0359     TRUE 0.849 6.000 0.000 NA   NA
 2324146 2324147 CUP0359 CUP0360     FALSE 0.034 126.000 0.000 NA   NA
 2324147 2324148 CUP0360 CUP0361     TRUE 0.798 10.000 0.000 NA   NA
 2324148 2324149 CUP0361 CUP0362     TRUE 0.715 -16.000 0.000 NA   NA
 2324149 2324150 CUP0362 CUP0363     TRUE 0.806 10.000 0.000 1.000   NA
 2324151 2324152 CUP0364 CUP0365     TRUE 0.921 0.000 0.012 1.000   NA
 2324152 2324153 CUP0365 CUP0366   glyS TRUE 0.903 -3.000 0.008 1.000 N NA
 2324153 2324154 CUP0366 CUP0367 glyS   FALSE 0.342 42.000 0.006 1.000   NA
 2324154 2324155 CUP0367 CUP0368     TRUE 0.989 -7.000 0.364 NA   NA
 2324155 2324156 CUP0368 CUP0369   kefB TRUE 0.958 9.000 0.034 NA   NA
 2324156 2324157 CUP0369 CUP0370 kefB hspR TRUE 0.950 0.000 0.034 1.000 N NA
 2324157 2324158 CUP0370 CUP0371 hspR   TRUE 0.966 12.000 0.282 1.000 N NA
 2324159 2324160 CUP0372 CUP0373 htrA   TRUE 0.631 61.000 0.294 1.000 N NA
 2324160 2324161 CUP0373 CUP0374     TRUE 0.998 -3.000 0.824 1.000 Y NA
 2324161 2324162 CUP0374 CUP0375     FALSE 0.117 55.000 0.000 1.000 N NA
 2324162 2324163 CUP0375 CUP0376     TRUE 0.943 -3.000 0.025 1.000 N NA
 2324163 2324164 CUP0376 CUP0377     TRUE 0.936 -3.000 0.020 1.000   NA
 2324164 2324165 CUP0377 CUP0378   flgB FALSE 0.119 56.000 0.000 1.000   NA
 2324165 2324166 CUP0378 CUP0379 flgB flgC TRUE 0.998 10.000 0.804 1.000 Y NA
 2324166 2324167 CUP0379 CUP0380 flgC fliE TRUE 0.996 7.000 0.271 0.008 Y NA
 2324167 2324168 CUP0380 CUP0381 fliE   TRUE 0.989 7.000 0.303 1.000 N NA
 2324168 2324169 CUP0381 CUP0382     TRUE 0.817 -3.000 0.000 1.000   NA
 2324170 2324171 CUP0383 CUP0384   vacB TRUE 0.943 0.000 0.024 1.000 N NA
 2324172 2324173 CUP0385 CUP0386 ilvC   TRUE 0.928 2.000 0.013 1.000   NA
 2324173 2324174 CUP0386 CUP0387   dprA TRUE 0.946 -7.000 0.022 1.000   NA
 2324174 2324175 CUP0387 CUP0388 dprA   TRUE 0.975 -3.000 0.026 1.000 Y NA
 2324175 2324176 CUP0388 CUP0389     TRUE 0.893 -10.000 0.008 NA N NA
 2324176 2324177 CUP0389 CUP0390     FALSE 0.043 103.000 0.000 NA   NA
 2324177 2324178 CUP0390 CUP0391     TRUE 0.994 11.000 1.000 NA   NA
 2324180 2324181 CUP0393 CUP0394 glmU coaBC TRUE 0.925 -3.000 0.016 1.000 N NA
 2324181 2324182 CUP0394 CUP0395 coaBC   TRUE 0.942 -3.000 0.024 NA   NA
 2324182 2324183 CUP0395 CUP0396     TRUE 0.844 4.000 0.000 NA   NA
 2324183 2324184 CUP0396 CUP0397   uppS TRUE 0.807 0.000 0.000 1.000 N NA
 2324184 2324185 CUP0397 CUP0398 uppS   TRUE 0.921 -10.000 0.017 1.000 N NA
 2324185 2324186 CUP0398 CUP0399     TRUE 0.863 -33.000 0.039 1.000   NA
 2324186 2324187 CUP0399 CUP0400   truA TRUE 0.960 0.000 0.059 1.000   NA
 2324188 2324189 CUP0401 CUP0402     TRUE 0.769 -13.000 0.000 1.000   NA
 2324189 2324190 CUP0402 CUP0403     TRUE 0.956 -3.000 0.056 1.000 N NA
 2324190 2324191 CUP0403 CUP0404     TRUE 0.957 0.000 0.047 1.000   NA
 2324191 2324192 CUP0404 CUP0405     TRUE 0.917 -3.000 0.012 NA   NA
 2324192 2324193 CUP0405 CUP0406   acnB FALSE 0.356 26.000 0.000 NA   NA
 2324193 2324194 CUP0406 CUP0407 acnB   FALSE 0.038 116.000 0.000 1.000   NA
 2324194 2324195 CUP0407 CUP0408   metG FALSE 0.385 57.000 0.046 1.000   NA
 2324195 2324196 CUP0408 CUP0409 metG   TRUE 0.938 10.000 0.024 NA   NA
 2324196 2324197 CUP0409 CUP0410   fbp TRUE 0.996 -7.000 0.778 NA   NA
 2324197 2324198 CUP0410 CUP0411 fbp mobB TRUE 0.707 -16.000 0.000 1.000 N NA
 2324200 2324201 CUP0413 CUP0414     TRUE 0.986 -3.000 0.323 NA   NA
 2324201 2324202 CUP0414 CUP0415     TRUE 0.970 -3.000 0.102 1.000   NA
 2324203 2324204 CUP0416 CUP0417 rpmH rnpA TRUE 0.995 -3.000 0.787 1.000   NA
 2324204 2324205 CUP0417 CUP0418 rnpA   TRUE 0.991 -12.000 0.540 NA   NA
 2324205 2324206 CUP0418 CUP0419     TRUE 0.991 1.000 0.461 NA   NA
 2324206 2324207 CUP0419 CUP0420     TRUE 0.959 -3.000 0.061 NA   NA
 2324207 2324208 CUP0420 CUP0421   trmE TRUE 0.959 -7.000 0.049 NA   NA
 2324208 2324209 CUP0421 CUP0422 trmE purL TRUE 0.854 11.000 0.008 1.000   NA
 2324209 2324210 CUP0422 CUP0423 purL   TRUE 0.914 -3.000 0.011 1.000 N NA
 2324210 2324211 CUP0423 CUP0424   hprA TRUE 0.792 10.000 0.000 1.000 N NA
 2324211 2324212 CUP0424 CUP0425 hprA   TRUE 0.932 -10.000 0.021 NA   NA
 2324212 2324213 CUP0425 CUP0426     TRUE 0.918 -3.000 0.012 NA   NA
 2324213 2324214 CUP0426 CUP0427     TRUE 0.967 9.000 0.065 NA   NA
 2324214 2324215 CUP0427 CUP0428     FALSE 0.022 618.000 0.000 NA   NA
 2324215 2324216 CUP0428 CUP0429     FALSE 0.026 221.000 0.000 NA   NA
 2324216 2324217 CUP0429 CUP0430     FALSE 0.028 194.000 0.000 NA   NA
 2324217 2324218 CUP0430 CUP0431     FALSE 0.027 208.000 0.000 NA   NA
 2324218 2324219 CUP0431 CUP0432     FALSE 0.036 118.000 0.000 NA   NA
 2324219 2324220 CUP0432 CUP0433     TRUE 0.999 -7.000 0.869 0.059 Y NA
 2324221 2324222 CUP0434 CUP0435 queA   TRUE 0.812 0.000 0.000 NA   NA
 2324223 2324224 CUP1644 CUP1645   guaA TRUE 0.829 11.000 0.002 1.000   NA
 2324225 2324226 CUP1646 CUP1647   uvrC TRUE 0.938 -7.000 0.018 NA   NA
 2324226 2324227 CUP1647 CUP1648 uvrC   TRUE 0.896 -3.000 0.005 NA   NA
 2324227 2324228 CUP1648 CUP1649     FALSE 0.307 30.000 0.000 NA   NA
 2324228 2324229 CUP1649 CUP1650     TRUE 0.937 7.000 0.012 NA   NA
 2324229 2324230 CUP1650 CUP1651     TRUE 0.985 -13.000 0.400 NA   NA
 2324230 2324231 CUP1651 CUP1652     TRUE 0.991 -6.000 0.400 NA   NA
 2324231 2324232 CUP1652 CUP1653     FALSE 0.061 80.000 0.000 NA   NA
 2324233 2324234 CUP1654 CUP1655     FALSE 0.268 58.000 0.017 NA   NA
 2324235 2324236 CUP1656 CUP1657     TRUE 0.812 0.000 0.000 NA   NA
 2324238 2324239 CUP1659 CUP1660     TRUE 0.989 -3.000 0.389 1.000   NA
 2324240 2324241 CUP1661 CUP1662     TRUE 0.809 -3.000 0.000 NA   NA
 2324241 2324242 CUP1662 CUP1663     FALSE 0.160 47.000 0.000 NA   NA
 2324242 2324243 CUP1663 CUP1664     FALSE 0.047 97.000 0.000 NA   NA
 2324243 2324244 CUP1664 CUP1665     TRUE 0.716 11.000 0.000 NA   NA
 2324248 2324249 CUP1669 CUP1670     TRUE 0.984 0.000 0.263 NA   NA
 2324249 2324250 CUP1670 CUP1671     TRUE 0.995 8.000 0.684 NA N NA
 2324250 2324251 CUP1671 CUP1672   gptA-1 TRUE 0.939 9.000 0.016 1.000   NA
 2324251 2324252 CUP1672 CUP1673 gptA-1   TRUE 0.953 10.000 0.048 1.000   NA
 2324252 2324253 CUP1673 CUP1674     FALSE 0.363 47.000 0.016 1.000   NA
 2324253 2324254 CUP1674 CUP1675     FALSE 0.208 62.000 0.011 1.000   NA
 2324255 2324256 CUP1676 CUP1677   glmS TRUE 0.988 3.000 0.312 1.000   NA
 2324257 2324258 CUP1678 CUP_tRNA-Arg-4 fumC   FALSE 0.023 388.000 0.000 NA   NA
 2324258 2324259 CUP_tRNA-Arg-4 CUP1680     FALSE 0.356 26.000 0.000 NA   NA
 2324259 2324260 CUP1680 CUP1681     FALSE 0.079 67.000 0.000 NA   NA
 2324260 2324261 CUP1681 CUP1682   fusA FALSE 0.168 46.000 0.000 NA   NA
 2324261 2324262 CUP1682 CUP1683 fusA rpsG TRUE 0.996 10.000 0.579 1.000 Y NA
 2324262 2324263 CUP1683 CUP1684 rpsG rpsL TRUE 0.878 70.000 0.620 0.006 Y NA
 2324263 2324264 CUP1684 CUP1685 rpsL   FALSE 0.025 233.000 0.000 1.000 N NA
 2324264 2324265 CUP1685 CUP1686     TRUE 0.948 11.000 0.095 1.000   NA
 2324265 2324266 CUP1686 CUP1687     TRUE 0.881 -3.000 0.000 0.002   NA
 2324267 2324268 CUP1688 CUP1689     FALSE 0.181 44.000 0.000 NA   NA
 2324269 2324270 CUP1690 CUP1691 rpoC rpoB TRUE 0.997 -7.000 0.851 0.001   NA
 2324270 2324271 CUP1691 CUP1692 rpoB rplL FALSE 0.388 99.000 0.223 1.000   NA
 2324271 2324272 CUP1692 CUP1693 rplL   TRUE 0.995 14.000 0.884 0.027 Y NA
 2324272 2324273 CUP1693 CUP1694   rplA TRUE 0.573 144.000 0.302 0.036 Y NA
 2324273 2324274 CUP1694 CUP1695 rplA rplK TRUE 0.946 56.000 0.838 0.036 Y NA
 2324274 2324275 CUP1695 CUP1696 rplK nusG TRUE 0.966 23.000 0.681 1.000 N NA
 2324275 2324276 CUP1696 CUP1697 nusG   TRUE 0.997 9.000 0.843 1.000   NA
 2324276 2324277 CUP1697 CUP_tRNA-Trp-1     FALSE 0.498 17.000 0.000 NA   NA
 2324277 2324278 CUP_tRNA-Trp-1 CUP1699   rpmG TRUE 0.597 13.000 0.000 NA   NA
 2324278 2324279 CUP1699 CUP1700 rpmG tuf TRUE 0.734 49.000 0.099 1.000 Y NA
 2324279 2324280 CUP1700 CUP_tRNA-Thr-1 tuf   FALSE 0.076 69.000 0.000 NA   NA
 2324280 2324281 CUP_tRNA-Thr-1 CUP_tRNA-Gly-3     FALSE 0.049 93.000 0.000 NA   NA
 2324281 2324282 CUP_tRNA-Gly-3 CUP_tRNA-Tyr-1     TRUE 0.846 8.000 0.000 NA   NA
 2324282 2324283 CUP_tRNA-Tyr-1 CUP_tRNA-Thr-2     FALSE 0.132 53.000 0.000 NA   NA
 2324283 2324284 CUP_tRNA-Thr-2 CUP1705     FALSE 0.481 18.000 0.000 NA   NA
 2324284 2324285 CUP1705 CUP1706     FALSE 0.382 24.000 0.000 NA   NA
 2324285 2324286 CUP1706 CUP1707     FALSE 0.185 43.000 0.000 NA   NA
 2324286 2324287 CUP1707 CUP1708   glnQ TRUE 0.511 17.000 0.000 1.000   NA
 2324287 2324288 CUP1708 CUP1709 glnQ glnP TRUE 0.998 2.000 0.773 0.005 Y NA
 2324288 2324289 CUP1709 CUP1710 glnP glnP TRUE 0.999 -7.000 0.841 0.005 Y NA
 2324292 2324293 CUP1713 CUP_tRNA-Lys-1 lepB   FALSE 0.035 119.000 0.000 NA   NA
 2324293 2324294 CUP_tRNA-Lys-1 CUP_tRNA-Val-2     TRUE 0.849 6.000 0.000 NA   NA
 2324294 2324295 CUP_tRNA-Val-2 CUP_tRNA-Asp-1     TRUE 0.560 14.000 0.000 NA   NA
 2324295 2324296 CUP_tRNA-Asp-1 CUP_tRNA-Lys-2     TRUE 0.844 4.000 0.000 NA   NA
 2324296 2324297 CUP_tRNA-Lys-2 CUP_tRNA-Arg-5     TRUE 0.560 14.000 0.000 NA   NA
 2324297 2324298 CUP_tRNA-Arg-5 CUP_tRNA-Val-3     TRUE 0.849 6.000 0.000 NA   NA
 2324298 2324299 CUP_tRNA-Val-3 CUP_tRNA-Asp-2     TRUE 0.560 14.000 0.000 NA   NA
 2324301 2324302 CUP1722 CUP1723     TRUE 0.844 4.000 0.000 NA   NA
 2324303 2324304 CUP1724 CUP1725     TRUE 0.955 12.000 0.051 1.000 Y NA
 2324304 2324305 CUP1725 CUP1726     FALSE 0.194 105.000 0.062 NA   NA
 2324305 2324306 CUP1726 CUP1727     TRUE 0.994 -7.000 0.667 NA   NA
 2324306 2324307 CUP1727 CUP1728   era FALSE 0.113 125.000 0.022 NA   NA
 2324307 2324308 CUP1728 CUP1729 era hslU TRUE 0.957 -3.000 0.051 1.000   NA
 2324308 2324309 CUP1729 CUP1730 hslU hslV TRUE 0.997 -3.000 0.752 1.000 Y NA
 2324309 2324310 CUP1730 CUP1731 hslV hsdS FALSE 0.103 61.000 0.000 1.000   NA
 2324310 2324311 CUP1731 CUP1732 hsdS   TRUE 0.703 -28.000 0.000 0.010   NA
 2324311 2324312 CUP1732 CUP1733   tlpC-2 FALSE 0.024 413.000 0.000 1.000   NA
 2324312 2324313 CUP1733 CUP1734 tlpC-2   FALSE 0.307 30.000 0.000 NA   NA
 2324316 2324317 CUP1737 CUP1738   spsC TRUE 0.994 0.000 0.678 1.000   NA
 2324317 2324318 CUP1738 CUP1739 spsC   TRUE 0.826 -7.000 0.000 NA   NA
 2324318 2324319 CUP1739 CUP1740     TRUE 0.515 -70.000 0.000 NA   NA
 2324319 2324320 CUP1740 CUP1741     TRUE 0.809 -3.000 0.000 NA   NA
 2324322 2324323 CUP1743 CUP1744     TRUE 0.753 -13.000 0.000 1.000 N NA
 2324323 2324324 CUP1744 CUP1745     TRUE 0.948 -7.000 0.000 0.069 Y NA
 2324324 2324325 CUP1745 CUP1746     FALSE 0.079 90.000 0.000 0.010   NA
 2324325 2324326 CUP1746 CUP1747     TRUE 0.851 4.000 0.000 1.000   NA
 2324326 2324327 CUP1747 CUP1748     TRUE 0.707 -28.000 0.000 0.007   NA
 2324327 2324328 CUP1748 CUP1749     TRUE 0.981 0.000 0.200 NA   NA
 2324328 2324329 CUP1749 CUP1750     FALSE 0.045 100.000 0.000 NA   NA
 2324332 2324333 CUP1753 CUP1754 purN   TRUE 0.918 -9.000 0.014 NA N NA
 2324333 2324334 CUP1754 CUP1755     TRUE 0.890 0.000 0.003 NA   NA
 2324334 2324335 CUP1755 CUP1756     TRUE 0.901 -7.000 0.004 NA   NA
 2324335 2324336 CUP1756 CUP1757   def TRUE 0.956 -3.000 0.054 1.000 N NA
 2324336 2324337 CUP1757 CUP1758 def clpP TRUE 0.959 7.000 0.030 1.000 N NA
 2324337 2324338 CUP1758 CUP1759 clpP tig TRUE 0.994 0.000 0.351 1.000 Y NA
 2324339 2324340 CUP1760 CUP1761 folE   TRUE 0.716 11.000 0.000 NA   NA
 2324340 2324341 CUP1761 CUP1762     FALSE 0.025 288.000 0.000 NA   NA
 2324342 2324343 CUP1763 CUP1764     TRUE 0.809 -3.000 0.000 NA   NA
 2324343 2324344 CUP1764 CUP1765   hisF TRUE 0.812 0.000 0.000 NA   NA
 2324344 2324345 CUP1765 CUP1766 hisF   TRUE 0.896 1.000 0.003 NA   NA
 2324345 2324346 CUP1766 CUP1767     TRUE 0.845 -15.000 0.004 NA   NA
 2324346 2324347 CUP1767 CUP1768   hisH TRUE 0.994 9.000 0.210 0.006 Y NA
 2324347 2324348 CUP1768 CUP1769 hisH   TRUE 0.817 -3.000 0.000 1.000   NA
 2324348 2324349 CUP1769 CUP1770     TRUE 0.696 -18.000 0.000 NA   NA
 2324349 2324350 CUP1770 CUP1771   hisB TRUE 0.809 -3.000 0.000 NA   NA
 2324350 2324351 CUP1771 CUP1772 hisB hisD TRUE 0.974 -7.000 0.010 0.006 Y NA
 2324351 2324352 CUP1772 CUP1773 hisD hisG TRUE 0.994 4.000 0.171 0.006 Y NA
 2324352 2324353 CUP1773 CUP1774 hisG rplQ FALSE 0.065 119.000 0.004 1.000 N NA
 2324353 2324354 CUP1774 CUP1775 rplQ rpoA TRUE 0.997 4.000 0.873 1.000 N NA
 2324354 2324355 CUP1775 CUP1776 rpoA rpsD TRUE 0.978 13.000 0.549 1.000 N NA
 2324355 2324356 CUP1776 CUP1777 rpsD rpsK TRUE 0.985 18.000 0.509 0.035 Y NA
 2324356 2324357 CUP1777 CUP1778 rpsK rpsM TRUE 0.998 10.000 0.810 0.026 Y NA
 2324357 2324358 CUP1778 CUP1779 rpsM   FALSE 0.041 106.000 0.000 NA   NA
 2324359 2324360 CUP1780 CUP1781     FALSE 0.054 88.000 0.000 NA   NA
 2324360 2324361 CUP1781 CUP1782     TRUE 0.806 10.000 0.000 1.000   NA
 2324362 2324363 CUP1783 CUP1784   comEC FALSE 0.491 -226.000 0.000 NA   NA
 2324363 2324364 CUP1784 CUP1785 comEC dedA TRUE 0.900 0.000 0.005 NA   NA
 2324364 2324365 CUP1785 CUP1786 dedA   TRUE 0.715 17.000 0.010 1.000   NA
 2324365 2324366 CUP1786 CUP1787     TRUE 0.859 -64.000 0.059 1.000   NA
 2324367 2324368 CUP1788 CUP1789   ftsY TRUE 0.914 0.000 0.011 1.000 N NA
 2324368 2324369 CUP1789 CUP1790 ftsY   FALSE 0.073 85.000 0.000 0.087 N NA
 2324369 2324370 CUP1790 CUP1791   kdsA FALSE 0.038 107.000 0.000 1.000 N NA
 2324370 2324371 CUP1791 CUP1792 kdsA ribH TRUE 0.822 15.000 0.027 1.000 N NA
 2324371 2324372 CUP1792 CUP1793 ribH nusB TRUE 0.956 2.000 0.045 1.000 N NA
 2324372 2324373 CUP1793 CUP1794 nusB pyrF TRUE 0.939 -3.000 0.023 1.000 N NA
 2324373 2324374 CUP1794 CUP1795 pyrF   TRUE 0.743 13.000 0.003 1.000   NA
 2324374 2324375 CUP1795 CUP1796     TRUE 0.996 -3.000 0.790 0.043   NA
 2324376 2324377 CUP1797 CUP1798     FALSE 0.027 208.000 0.000 NA   NA
 2324377 2324378 CUP1798 CUP1799     FALSE 0.028 194.000 0.000 NA   NA
 2324378 2324379 CUP1799 CUP_tRNA-Phe-1     FALSE 0.022 1070.000 0.000 NA   NA
 2324379 2324380 CUP_tRNA-Phe-1 CUP1801     FALSE 0.469 19.000 0.000 NA   NA
 2324381 2324382 CUP1802 CUP1803 trk1 ktrA TRUE 0.994 12.000 0.647 0.005 Y NA
 2324383 2324384 CUP1804 CUP1805     TRUE 0.905 2.000 0.007 1.000 N NA
 2324386 2324387 CUP1807 CUP1808 pacS   TRUE 0.786 30.000 0.067 0.002   NA
 2324387 2324388 CUP1808 CUP1809     TRUE 0.955 -10.000 0.053 1.000   NA
 2324389 2324390 CUP1810 CUP1811     TRUE 0.837 -31.000 0.022 1.000   NA
 2324390 2324391 CUP1811 CUP1812     FALSE 0.121 55.000 0.000 NA   NA
 2324391 2324392 CUP1812 CUP1813     FALSE 0.036 116.000 0.000 NA   NA
 2324393 2324394 CUP1814 CUP1815 ctsF ctsE TRUE 0.929 -3.000 0.000 1.000 Y NA
 2324394 2324395 CUP1815 CUP1816 ctsE ctsX TRUE 0.817 -3.000 0.000 1.000   NA
 2324395 2324396 CUP1816 CUP1817 ctsX ctsP TRUE 0.881 47.000 0.667 1.000   NA
 2324396 2324397 CUP1817 CUP1818 ctsP ctsD TRUE 0.981 -7.000 0.167 1.000   NA
 2324397 2324398 CUP1818 CUP1819 ctsD ctsR TRUE 0.951 -22.000 0.167 NA   NA
 2324398 2324399 CUP1819 CUP1820 ctsR   TRUE 0.949 -3.000 0.032 NA   NA
 2324399 2324400 CUP1820 CUP1821     FALSE 0.026 225.000 0.000 NA   NA
 2324400 2324401 CUP1821 CUP1822   cydB TRUE 0.961 10.000 0.078 NA   NA
 2324401 2324402 CUP1822 CUP1823 cydB cydA TRUE 0.999 0.000 0.962 0.043 Y NA
 2324402 2324403 CUP1823 CUP1824 cydA   TRUE 0.996 -3.000 0.887 NA   NA
 2324404 2324405 CUP1825 CUP1826 cdtA cdtB TRUE 0.993 0.000 0.421 0.003   NA
 2324405 2324406 CUP1826 CUP1827 cdtB cdtC TRUE 0.993 10.000 0.500 0.003   NA
 2324406 2324407 CUP1827 CUP1828 cdtC   FALSE 0.025 280.000 0.000 NA   NA
 2324407 2324408 CUP1828 CUP1829     FALSE 0.034 124.000 0.000 NA   NA
 2324409 2324410 CUP1830 CUP1831     FALSE 0.030 168.000 0.000 NA   NA
 2324410 2324411 CUP1831 CUP1832     TRUE 0.520 -66.000 0.000 NA   NA
 2324411 2324412 CUP1832 CUP1833     TRUE 0.650 12.000 0.000 NA   NA
 2324412 2324413 CUP1833 CUP1834     FALSE 0.025 246.000 0.000 NA   NA
 2324414 2324415 CUP1835 CUP1836 ccoN ccoO TRUE 0.974 12.000 0.283 0.003 N NA
 2324415 2324416 CUP1836 CUP1837 ccoO   TRUE 0.997 5.000 0.738 0.003 N NA
 2324416 2324417 CUP1837 CUP1838   ccoP TRUE 0.988 0.000 0.262 0.003 N NA
 2324417 2324418 CUP1838 CUP1839 ccoP   TRUE 0.971 0.000 0.105 NA   NA
 2324418 2324419 CUP1839 CUP1840     TRUE 0.981 -3.000 0.211 NA   NA
 2324419 2324420 CUP1840 CUP1841     TRUE 0.984 -3.000 0.250 NA   NA
 2324420 2324421 CUP1841 CUP1842     TRUE 0.972 -7.000 0.102 NA   NA
 2324421 2324422 CUP1842 CUP1843     TRUE 0.967 -3.000 0.091 NA   NA
 2324422 2324423 CUP1843 CUP1844     TRUE 0.989 -3.000 0.117 0.067 Y NA
 2324424 2324425 CUP0436 CUP0437   tatC TRUE 0.806 10.000 0.000 1.000   NA
 2324425 2324426 CUP0437 CUP0438 tatC   TRUE 0.997 -7.000 0.535 1.000 Y NA
 2324426 2324427 CUP0438 CUP0439   panC FALSE 0.194 41.000 0.000 1.000 N NA
 2324427 2324428 CUP0439 CUP0440 panC panB TRUE 0.996 10.000 0.395 0.001 Y NA
 2324428 2324429 CUP0440 CUP0441 panB   TRUE 0.812 0.000 0.000 NA   NA
 2324429 2324430 CUP0441 CUP0442     FALSE 0.271 33.000 0.000 NA   NA
 2324431 2324432 CUP0443 CUP0444 glnP glnQ TRUE 0.987 -7.000 0.096 1.000 Y NA
 2324439 2324440 CUP0451 CUP0452     TRUE 0.957 -7.000 0.039 NA   NA
 2324440 2324441 CUP0452 CUP0453     TRUE 0.915 -3.000 0.011 NA   NA
 2324443 2324444 CUP0455 CUP0456 adk aspS TRUE 0.942 -3.000 0.025 1.000 N NA
 2324445 2324446 CUP0457 CUP0458     TRUE 0.961 0.000 0.066 1.000 N NA
 2324446 2324447 CUP0458 CUP0459     TRUE 0.536 56.000 0.141 1.000 N NA
 2324447 2324448 CUP0459 CUP0460     TRUE 0.916 -9.000 0.013 NA N NA
 2324448 2324449 CUP0460 CUP0461   dniR TRUE 0.924 0.000 0.015 NA   NA
 2324449 2324450 CUP0461 CUP0462 dniR rlpA TRUE 0.873 -37.000 0.062 NA   NA
 2324450 2324451 CUP0462 CUP0463 rlpA   TRUE 0.938 2.000 0.020 NA   NA
 2324451 2324452 CUP0463 CUP0464     TRUE 0.882 -21.000 0.023 NA   NA
 2324452 2324453 CUP0464 CUP0465     TRUE 0.883 -15.000 0.013 NA   NA
 2324453 2324454 CUP0465 CUP0466     TRUE 0.949 -10.000 0.041 NA   NA
 2324454 2324455 CUP0466 CUP0467     TRUE 0.905 0.000 0.007 NA   NA
 2324455 2324456 CUP0467 CUP0468   pbp-1 TRUE 0.954 0.000 0.043 NA   NA
 2324456 2324457 CUP0468 CUP0469 pbp-1 napA FALSE 0.030 145.000 0.000 1.000 N NA
 2324457 2324458 CUP0469 CUP0470 napA   TRUE 0.990 3.000 0.270 0.003   NA
 2324458 2324459 CUP0470 CUP0471     TRUE 0.996 -3.000 0.795 0.003   NA
 2324459 2324460 CUP0471 CUP0472     TRUE 0.995 -10.000 0.385 0.003 Y NA
 2324460 2324461 CUP0472 CUP0473     TRUE 0.974 0.000 0.132 NA   NA
 2324461 2324462 CUP0473 CUP0474     TRUE 0.975 0.000 0.139 NA   NA
 2324462 2324463 CUP0474 CUP0475     TRUE 0.661 41.000 0.111 NA   NA
 2324463 2324464 CUP0475 CUP0476   azlC TRUE 0.920 -3.000 0.013 NA   NA
 2324464 2324465 CUP0476 CUP0477 azlC   TRUE 0.998 -7.000 0.915 NA Y NA
 2324465 2324466 CUP0477 CUP0478     TRUE 0.970 9.000 0.013 NA Y NA
 2324466 2324467 CUP0478 CUP0479     TRUE 0.534 15.000 0.000 NA   NA
 2324467 2324468 CUP0479 CUP0480     FALSE 0.160 47.000 0.000 NA   NA
 2324468 2324469 CUP0480 CUP0481     TRUE 0.974 -3.000 0.133 NA   NA
 2324469 2324470 CUP0481 CUP0482   cca TRUE 0.959 -31.000 0.325 NA   NA
 2324470 2324471 CUP0482 CUP0483 cca purU TRUE 0.939 -15.000 0.064 1.000 N NA
 2324471 2324472 CUP0483 CUP0484 purU corA TRUE 0.792 10.000 0.000 1.000 N NA
 2324472 2324473 CUP0484 CUP0485 corA   TRUE 0.863 11.000 0.011 1.000 N NA
 2324473 2324474 CUP0485 CUP0486     FALSE 0.029 163.000 0.000 1.000 N NA
 2324474 2324475 CUP0486 CUP0487     FALSE 0.037 180.000 0.000 0.085 N NA
 2324475 2324476 CUP0487 CUP0488     TRUE 0.919 -24.000 0.085 NA   NA
 2324477 2324478 CUP0489 CUP0490     TRUE 0.843 9.000 0.000 1.000   NA
 2324479 2324480 CUP0491 CUP0492     FALSE 0.041 106.000 0.000 NA   NA
 2324481 2324482 CUP0493 CUP0494     TRUE 0.778 46.000 0.333 NA   NA
 2324483 2324484 CUP0495 CUP0496     FALSE 0.414 23.000 0.000 NA   NA
 2324485 2324486 CUP0497 CUP0498     TRUE 0.877 30.000 0.294 NA   NA
 2324486 2324487 CUP0498 CUP0499     TRUE 0.979 -7.000 0.154 NA   NA
 2324487 2324488 CUP0499 CUP0500   flhA TRUE 0.969 10.000 0.106 1.000   NA
 2324488 2324489 CUP0500 CUP0501 flhA   TRUE 0.959 -7.000 0.053 NA N NA
 2324489 2324490 CUP0501 CUP0502     FALSE 0.448 21.000 0.000 NA   NA
 2324491 2324492 CUP0503 CUP0504 rpsO   FALSE 0.253 33.000 0.000 NA N NA
 2324493 2324494 CUP0505 CUP0506   oorB TRUE 0.995 -3.000 0.324 0.003 Y NA
 2324494 2324495 CUP0506 CUP0507 oorB oorA TRUE 0.998 2.000 0.771 0.002 Y NA
 2324495 2324496 CUP0507 CUP0508 oorA korD TRUE 0.996 9.000 0.316 0.003 Y NA
 2324496 2324497 CUP0508 CUP0509 korD sucD TRUE 0.984 10.000 0.097 1.000 Y NA
 2324497 2324498 CUP0509 CUP0510 sucD sucC TRUE 0.992 10.000 0.169 0.002 Y NA
 2324498 2324499 CUP0510 CUP0511 sucC   TRUE 0.974 1.000 0.022 1.000 Y NA
 2324499 2324500 CUP0511 CUP0512     TRUE 0.974 -3.000 0.025 1.000 Y NA
 2324500 2324501 CUP0512 CUP0513   psd FALSE 0.035 115.000 0.000 1.000 N NA
 2324501 2324502 CUP0513 CUP0514 psd   TRUE 0.967 -3.000 0.089 1.000   NA
 2324503 2324504 CUP0515 CUP0516 gltX   TRUE 0.945 -16.000 0.088 1.000   NA
 2324504 2324505 CUP0516 CUP0517     TRUE 0.964 -3.000 0.080 NA   NA
 2324506 2324507 CUP0518 CUP0519     FALSE 0.356 26.000 0.000 NA   NA
 2324507 2324508 CUP0519 CUP0520     FALSE 0.504 -100.000 0.000 NA   NA
 2324508 2324509 CUP0520 CUP0521     FALSE 0.481 18.000 0.000 NA   NA
 2324509 2324510 CUP0521 CUP0522     TRUE 0.533 -55.000 0.000 NA   NA
 2324510 2324511 CUP0522 CUP0523     FALSE 0.044 101.000 0.000 NA   NA
 2324511 2324512 CUP0523 CUP0524     FALSE 0.025 270.000 0.000 NA   NA
 2324512 2324513 CUP0524 CUP0525     FALSE 0.059 82.000 0.000 NA   NA
 2324513 2324514 CUP0525 CUP0526     FALSE 0.032 144.000 0.000 NA   NA
 2324515 2324516 CUP0527 CUP0528 carB   TRUE 0.987 11.000 0.556 NA N NA
 2324518 2324519 CUP0530 CUP0531 acpP fabF-1 TRUE 0.888 24.000 0.066 1.000 Y NA
 2324519 2324520 CUP0531 CUP0532 fabF-1 accA TRUE 0.980 2.000 0.046 1.000 Y NA
 2324521 2324522 CUP0533 CUP0534     TRUE 0.833 3.000 0.000 NA   NA
 2324522 2324523 CUP0534 CUP0535   ribE TRUE 0.758 -36.000 0.011 NA   NA
 2324523 2324524 CUP0535 CUP0536 ribE   TRUE 0.895 0.000 0.004 NA   NA
 2324525 2324526 CUP0537 CUP0538 groES groEL TRUE 0.992 11.000 0.356 0.009 Y NA
 2324526 2324527 CUP0538 CUP0539 groEL thiH FALSE 0.043 101.000 0.000 1.000 N NA
 2324527 2324528 CUP0539 CUP0540 thiH   TRUE 0.903 32.000 0.128 0.005 Y NA
 2324529 2324530 CUP0541 CUP0542 glpQ-2 glpQ-2 FALSE 0.031 148.000 0.000 NA   NA
 2324532 2324533 CUP0544 CUP0545     TRUE 0.919 -3.000 0.014 1.000 N NA
 2324533 2324534 CUP0545 CUP0546   rplS FALSE 0.117 55.000 0.000 1.000 N NA
 2324534 2324535 CUP0546 CUP0547 rplS trmD TRUE 0.996 10.000 0.567 1.000 Y NA
 2324535 2324536 CUP0547 CUP0548 trmD   TRUE 0.997 -3.000 0.672 1.000 Y NA
 2324536 2324537 CUP0548 CUP0549     TRUE 0.988 -7.000 0.324 1.000   NA
 2324537 2324538 CUP0549 CUP0550   rpsP TRUE 0.990 3.000 0.385 1.000   NA
 2324538 2324539 CUP0550 CUP0551 rpsP ffh TRUE 0.636 63.000 0.361 1.000 N NA
 2324539 2324540 CUP0551 CUP0552 ffh   FALSE 0.203 63.000 0.013 1.000 N NA
 2324540 2324541 CUP0552 CUP0553     TRUE 0.949 -19.000 0.133 1.000 N NA
 2324541 2324542 CUP0553 CUP0554     TRUE 0.812 27.000 0.122 NA   NA
 2324542 2324543 CUP0554 CUP0555     TRUE 0.978 11.000 0.342 NA   NA
 2324543 2324544 CUP0555 CUP0556   glyQ TRUE 0.937 -13.000 0.041 NA   NA
 2324544 2324545 CUP0556 CUP0557 glyQ   TRUE 0.915 -3.000 0.011 NA   NA
 2324545 2324546 CUP0557 CUP0558   purE TRUE 0.936 1.000 0.019 NA   NA
 2324546 2324547 CUP0558 CUP0559 purE   TRUE 0.930 -3.000 0.018 1.000 N NA
 2324547 2324548 CUP0559 CUP0560     TRUE 0.962 -3.000 0.068 NA   NA
 2324549 2324550 CUP0561 CUP0562 glnA   FALSE 0.078 217.000 0.000 1.000 Y NA
 2324550 2324551 CUP0562 CUP0563     FALSE 0.112 109.000 0.000 1.000 Y NA
 2324551 2324552 CUP0563 CUP0564   trpD TRUE 0.978 -3.000 0.019 0.001 Y NA
 2324552 2324553 CUP0564 CUP0565 trpD trpF TRUE 0.934 -37.000 0.052 1.000 Y NA
 2324553 2324554 CUP0565 CUP0566 trpF trpB TRUE 0.996 -3.000 0.375 0.003 Y NA
 2324554 2324555 CUP0566 CUP0567 trpB trpA TRUE 0.995 -7.000 0.248 0.001 Y NA
 2324555 2324556 CUP0567 CUP0568 trpA   FALSE 0.211 67.000 0.017 NA   NA
 2324556 2324557 CUP0568 CUP0569     TRUE 0.994 -7.000 0.625 NA   NA
 2324557 2324558 CUP0569 CUP0570     TRUE 0.992 0.000 0.531 NA   NA
 2324559 2324560 CUP0571 CUP0572 gppA   TRUE 0.996 1.000 0.806 1.000   NA
 2324560 2324561 CUP0572 CUP0573     FALSE 0.341 106.000 0.200 1.000   NA
 2324561 2324562 CUP0573 CUP0574     FALSE 0.055 87.000 0.000 NA   NA
 2324562 2324563 CUP0574 CUP0575   rpsU FALSE 0.118 94.000 0.012 NA   NA
 2324564 2324565 CUP0576 CUP0577     TRUE 0.995 -10.000 0.818 1.000   NA
 2324565 2324566 CUP0577 CUP0578     FALSE 0.320 98.000 0.145 1.000   NA
 2324566 2324567 CUP0578 CUP0579     TRUE 0.996 0.000 0.945 1.000 N NA
 2324567 2324568 CUP0579 CUP0580     TRUE 0.987 -7.000 0.241 0.028 N NA
 2324571 2324572 CUP0583 CUP0584   lspA TRUE 0.897 -16.000 0.020 1.000   NA
 2324572 2324573 CUP0584 CUP0585 lspA glmM TRUE 0.957 -7.000 0.042 1.000 N NA
 2324573 2324574 CUP0585 CUP0586 glmM   FALSE 0.121 55.000 0.000 NA   NA
 2324574 2324575 CUP0586 CUP0587   mauG FALSE 0.056 85.000 0.000 NA   NA
 2324576 2324577 CUP0588 CUP0589     TRUE 0.931 -15.000 0.040 1.000   NA
 2324577 2324578 CUP0589 CUP0590     TRUE 0.826 -7.000 0.000 NA   NA
 2324579 2324580 CUP0591 CUP0592     TRUE 0.998 -7.000 0.846 1.000 Y NA
 2324581 2324582 CUP0593 CUP0594     TRUE 0.609 13.000 0.000 1.000   NA
 2324583 2324584 CUP0595 CUP0596     TRUE 0.715 -16.000 0.000 NA   NA
 2324584 2324585 CUP0596 CUP0597     TRUE 0.985 -3.000 0.286 NA   NA
 2324585 2324586 CUP0597 CUP0598     FALSE 0.023 402.000 0.000 NA   NA
 2324586 2324587 CUP0598 CUP0599     FALSE 0.069 76.000 0.000 1.000   NA
 2324587 2324588 CUP0599 CUP0600   rfbF FALSE 0.032 129.000 0.000 1.000 N NA
 2324588 2324589 CUP0600 CUP0601 rfbF   TRUE 0.994 -3.000 0.679 1.000   NA
 2324589 2324590 CUP0601 CUP0602     TRUE 0.994 -9.000 0.667 1.000   NA
 2324590 2324591 CUP0602 CUP0603     TRUE 0.597 13.000 0.000 NA   NA
 2324591 2324592 CUP0603 CUP0604     TRUE 0.514 16.000 0.000 NA   NA
 2324594 2324595 CUP1260 CUP1261     TRUE 0.798 10.000 0.000 NA   NA
 2324595 2324596 CUP1261 CUP1262     TRUE 0.970 0.000 0.018 1.000 Y NA
 2324596 2324597 CUP1262 CUP1263     TRUE 0.969 -3.000 0.018 1.000 Y NA
 2324597 2324598 CUP1263 CUP1264     TRUE 0.997 2.000 1.000 NA   NA
 2324598 2324599 CUP1264 CUP1265     TRUE 0.997 -3.000 1.000 NA   NA
 2324599 2324600 CUP1265 CUP1266     FALSE 0.098 61.000 0.000 NA   NA
 2324600 2324601 CUP1266 CUP1267     TRUE 0.927 -3.000 0.000 NA Y NA
 2324601 2324602 CUP1267 CUP1268     TRUE 0.997 -3.000 0.667 NA Y NA
 2324602 2324603 CUP1268 CUP1269   glf TRUE 0.962 2.000 0.008 NA Y NA
 2324603 2324604 CUP1269 CUP1270 glf   FALSE 0.174 65.000 0.008 NA   NA
 2324605 2324606 CUP1271 CUP1272     FALSE 0.191 42.000 0.000 NA   NA
 2324608 2324609 CUP1274 CUP1275     TRUE 0.809 -3.000 0.000 NA   NA
 2324609 2324610 CUP1275 CUP1276     FALSE 0.279 64.000 0.000 0.011 Y NA
 2324610 2324611 CUP1276 CUP1277     TRUE 0.826 -7.000 0.000 NA   NA
 2324611 2324612 CUP1277 CUP1278     FALSE 0.346 40.000 0.005 NA   NA
 2324612 2324613 CUP1278 CUP1279     TRUE 0.833 -7.000 0.000 1.000   NA
 2324613 2324614 CUP1279 CUP1280     TRUE 0.804 -3.000 0.000 1.000 N NA
 2324615 2324616 CUP1281 CUP1282     TRUE 0.826 -7.000 0.000 NA   NA
 2324617 2324618 CUP1283 CUP1284     FALSE 0.447 113.000 0.389 NA   NA
 2324620 2324621 CUP1286 CUP1287 selA   TRUE 0.995 -6.000 0.569 0.001 N NA
 2324621 2324622 CUP1287 CUP1288     TRUE 0.548 38.000 0.031 1.000 N NA
 2324622 2324623 CUP1288 CUP1289     TRUE 0.817 -3.000 0.000 1.000   NA
 2324623 2324624 CUP1289 CUP1290     FALSE 0.034 132.000 0.000 1.000   NA
 2324624 2324625 CUP1290 CUP1291   luxS FALSE 0.038 107.000 0.000 1.000 N NA
 2324625 2324626 CUP1291 CUP1292 luxS metE FALSE 0.044 342.000 0.004 1.000 N NA
 2324626 2324627 CUP1292 CUP1293 metE   TRUE 0.984 10.000 0.050 0.002 Y NA
 2324630 2324631 CUP1296 CUP1297     TRUE 0.952 0.000 0.035 NA   NA
 2324631 2324632 CUP1297 CUP1298   flgK FALSE 0.325 73.000 0.084 NA   NA
 2324632 2324633 CUP1298 CUP1299 flgK   TRUE 0.984 13.000 0.558 0.004   NA
 2324633 2324634 CUP1299 CUP1300     TRUE 0.944 36.000 0.677 0.004   NA
 2324634 2324635 CUP1300 CUP1301     TRUE 0.752 58.000 0.469 NA   NA
 2324635 2324636 CUP1301 CUP1302   flgI TRUE 0.993 0.000 0.569 NA   NA
 2324638 2324639 CUP1304 CUP1305     TRUE 0.993 -3.000 0.200 0.003 Y NA
 2324639 2324640 CUP1305 CUP1306   fdhA TRUE 0.902 4.000 0.000 0.003   NA
 2324640 2324641 CUP1306 CUP1307 fdhA   TRUE 0.984 0.000 0.250 NA   NA
 2324641 2324642 CUP1307 CUP1308     TRUE 0.969 -25.000 0.375 NA   NA
 2324645 2324646 CUP1311 CUP1312   moaD2 TRUE 0.884 -13.000 0.010 1.000 N NA
 2324646 2324647 CUP1312 CUP1313 moaD2   TRUE 0.996 1.000 0.501 1.000 Y NA
 2324647 2324648 CUP1313 CUP1314   moeA1 TRUE 0.975 10.000 0.018 0.005 Y NA
 2324648 2324649 CUP1314 CUP1315 moeA1 trxB FALSE 0.048 91.000 0.000 1.000 N NA
 2324653 2324654 CUP1319 CUP1320     TRUE 0.995 -7.000 0.714 NA   NA
 2324654 2324655 CUP1320 CUP1321     TRUE 0.519 83.000 0.333 NA   NA
 2324656 2324657 CUP1322 CUP_tRNA-Val-1     FALSE 0.092 62.000 0.000 NA   NA
 2324657 2324658 CUP_tRNA-Val-1 CUP_tRNA-Ala-3     TRUE 0.833 3.000 0.000 NA   NA
 2324658 2324659 CUP_tRNA-Ala-3 CUP1325     TRUE 0.534 15.000 0.000 NA   NA
 2324659 2324660 CUP1325 CUP1326   ribD TRUE 0.789 -22.000 0.005 NA   NA
 2324660 2324661 CUP1326 CUP1327 ribD   TRUE 0.804 1.000 0.000 NA N NA
 2324662 2324663 CUP1328 CUP1329     TRUE 0.970 -3.000 0.056 0.001   NA
 2324663 2324664 CUP1329 CUP1330     FALSE 0.305 66.000 0.046 NA   NA
 2324664 2324665 CUP1330 CUP1331     TRUE 0.976 2.000 0.132 NA   NA
 2324665 2324666 CUP1331 CUP1332     TRUE 0.993 -3.000 0.600 NA   NA
 2324667 2324668 CUP1333 CUP1334 acpS fliL TRUE 0.954 0.000 0.047 1.000 N NA
 2324670 2324671 CUP1336 CUP1337   nadD TRUE 0.901 23.000 0.221 NA   NA
 2324672 2324673 CUP1338 CUP1339 gap pgk TRUE 0.979 2.000 0.020 0.004 Y NA
 2324673 2324674 CUP1339 CUP1340 pgk tpiA TRUE 0.973 0.000 0.022 1.000 Y NA
 2324674 2324675 CUP1340 CUP1341 tpiA fabI TRUE 0.969 -3.000 0.071 0.037 N NA
 2324675 2324676 CUP1341 CUP1342 fabI   TRUE 0.791 -10.000 0.000 1.000 N NA
 2324677 2324678 CUP1343 CUP1344 feoB   TRUE 0.984 1.000 0.075 1.000 Y NA
 2324679 2324680 CUP_tRNA-Pro-1 CUP_tRNA-His-1     FALSE 0.414 23.000 0.000 NA   NA
 2324680 2324681 CUP_tRNA-His-1 CUP_tRNA-Arg-2     TRUE 0.844 4.000 0.000 NA   NA
 2324681 2324682 CUP_tRNA-Arg-2 CUP_tRNA-Arg-3     TRUE 0.716 11.000 0.000 NA   NA
 2324682 2324683 CUP_tRNA-Arg-3 CUP_tRNA-Leu-3     TRUE 0.849 6.000 0.000 NA   NA
 2324683 2324684 CUP_tRNA-Leu-3 CUP1350   fdhD FALSE 0.031 154.000 0.000 NA   NA
 2324684 2324685 CUP1350 CUP1351 fdhD   TRUE 0.981 -7.000 0.172 NA   NA
 2324685 2324686 CUP1351 CUP1352     TRUE 0.801 18.000 0.031 NA   NA
 2324686 2324687 CUP1352 CUP1353   selD FALSE 0.246 104.000 0.104 1.000 N NA
 2324688 2324689 CUP1354 CUP1355     FALSE 0.144 50.000 0.000 NA   NA
 2324690 2324691 CUP1356 CUP1357     TRUE 0.812 0.000 0.000 NA   NA
 2324691 2324692 CUP1357 CUP1358     TRUE 0.607 -27.000 0.000 NA   NA
 2324692 2324693 CUP1358 CUP1359     FALSE 0.448 21.000 0.000 NA   NA
 2324693 2324694 CUP1359 CUP1360     FALSE 0.028 182.000 0.000 NA   NA
 2324694 2324695 CUP1360 CUP1361     TRUE 0.735 -15.000 0.000 NA   NA
 2324695 2324696 CUP1361 CUP1362     TRUE 0.577 -31.000 0.000 NA   NA
 2324698 2324699 CUP1364 CUP1365     FALSE 0.414 23.000 0.000 NA   NA
 2324699 2324700 CUP1365 CUP1366   putP TRUE 0.973 10.000 0.141 1.000 N NA
 2324700 2324701 CUP1366 CUP1367 putP   FALSE 0.119 56.000 0.000 1.000   NA
 2324702 2324703 CUP1368 CUP1369 ligA-2   TRUE 0.577 -31.000 0.000 NA   NA
 2324703 2324704 CUP1369 CUP1370     TRUE 0.993 -13.000 0.788 NA   NA
 2324704 2324705 CUP1370 CUP1371   eno TRUE 0.897 -31.000 0.080 NA   NA
 2324705 2324706 CUP1371 CUP1372 eno recA TRUE 0.952 1.000 0.033 1.000 N NA
 2324707 2324708 CUP1373 CUP1374   fliQ TRUE 0.960 10.000 0.068 1.000   NA
 2324708 2324709 CUP1374 CUP1375 fliQ murB2 FALSE 0.319 69.000 0.066 1.000 N NA
 2324709 2324710 CUP1375 CUP1376 murB2 bioB FALSE 0.234 36.000 0.000 1.000 N NA
 2324710 2324711 CUP1376 CUP1377 bioB napA-1 TRUE 0.864 -19.000 0.017 1.000 N NA
 2324711 2324712 CUP1377 CUP1378 napA-1   TRUE 0.681 -19.000 0.000 NA   NA
 2324712 2324713 CUP1378 CUP1379   gltA TRUE 0.650 12.000 0.000 NA   NA
 2324713 2324714 CUP1379 CUP1380 gltA   TRUE 0.937 -3.000 0.022 1.000 N NA
 2324714 2324715 CUP1380 CUP1381     TRUE 0.584 37.000 0.039 NA   NA
 2324716 2324717 CUP1382 CUP1383     FALSE 0.121 55.000 0.000 NA   NA
 2324717 2324718 CUP1383 CUP1384     TRUE 0.904 -3.000 0.009 NA N NA
 2324718 2324719 CUP1384 CUP1385     TRUE 0.950 -3.000 0.042 NA N NA
 2324719 2324720 CUP1385 CUP1386   fabD TRUE 0.950 -3.000 0.037 1.000 N NA
 2324720 2324721 CUP1386 CUP1387 fabD slyD TRUE 0.918 -3.000 0.013 1.000 N NA
 2324721 2324722 CUP1387 CUP1388 slyD   TRUE 0.962 21.000 0.543 1.000   NA
 2324722 2324723 CUP1388 CUP1389     TRUE 0.995 0.000 0.794 1.000   NA
 2324723 2324724 CUP1389 CUP1390   tolB TRUE 0.735 78.000 0.702 1.000 N NA
 2324725 2324726 CUP1391 CUP1392 hsdM hsdR_2 TRUE 0.988 3.000 0.083 0.063 Y NA
 2324726 2324727 CUP1392 CUP1393 hsdR_2 hsdS_4 TRUE 0.968 -16.000 0.025 0.003 Y NA
 2324728 2324729 CUP1394 CUP1395     TRUE 0.987 -3.000 0.343 NA   NA
 2324729 2324730 CUP1395 CUP1396     TRUE 0.999 2.000 0.944 0.032 Y NA
 2324730 2324731 CUP1396 CUP1397   atpC TRUE 0.950 -3.000 0.036 1.000 N NA
 2324731 2324732 CUP1397 CUP1398 atpC atpD TRUE 0.998 0.000 0.837 0.007 Y NA
 2324732 2324733 CUP1398 CUP1399 atpD atpG TRUE 0.986 24.000 0.724 0.007 Y NA
 2324733 2324734 CUP1399 CUP1400 atpG atpA TRUE 0.998 10.000 0.846 0.007 Y NA
 2324734 2324735 CUP1400 CUP1401 atpA atpH TRUE 0.997 12.000 0.864 0.007 Y NA
 2324735 2324736 CUP1401 CUP1402 atpH   TRUE 0.991 0.000 0.132 0.007 Y NA
 2324736 2324737 CUP1402 CUP1403     TRUE 0.991 9.000 0.110 0.007 Y NA
 2324737 2324738 CUP1403 CUP1404   spo0J FALSE 0.316 62.000 0.037 1.000 N NA
 2324738 2324739 CUP1404 CUP1405 spo0J   TRUE 0.997 5.000 0.827 1.000 N NA
 2324739 2324740 CUP1405 CUP1406     TRUE 0.951 -3.000 0.040 1.000 N NA
 2324740 2324741 CUP1406 CUP1407   fmt TRUE 0.898 -19.000 0.029 1.000 N NA
 2324741 2324742 CUP1407 CUP1408 fmt   FALSE 0.170 45.000 0.000 1.000 N NA
 2324742 2324743 CUP1408 CUP1409   rplO TRUE 0.995 0.000 0.730 1.000 N NA
 2324743 2324744 CUP1409 CUP1410 rplO rpsE TRUE 0.993 4.000 0.148 0.032 Y NA
 2324744 2324745 CUP1410 CUP1411 rpsE rplR TRUE 0.998 10.000 0.814 0.032 Y NA
 2324745 2324746 CUP1411 CUP1412 rplR   TRUE 0.998 10.000 0.815 0.024 Y NA
 2324746 2324747 CUP1412 CUP1413   rpsH TRUE 0.902 75.000 0.808 0.024 Y NA
 2324747 2324748 CUP1413 CUP1414 rpsH rpsN TRUE 0.996 10.000 0.473 0.024 Y NA
 2324748 2324749 CUP1414 CUP1415 rpsN   TRUE 0.991 -25.000 0.496 0.024 Y NA
 2324749 2324750 CUP1415 CUP1416   rplX TRUE 0.998 9.000 0.758 0.024 Y NA
 2324750 2324751 CUP1416 CUP1417 rplX rplN TRUE 0.998 0.000 0.810 0.032 Y NA
 2324751 2324752 CUP1417 CUP1418 rplN rpsQ TRUE 0.998 -3.000 0.791 0.032 Y NA
 2324752 2324753 CUP1418 CUP1419 rpsQ rpmC TRUE 0.996 10.000 0.828 0.024   NA
 2324753 2324754 CUP1419 CUP1420 rpmC rplP TRUE 0.995 -13.000 0.802 0.024   NA
 2324754 2324755 CUP1420 CUP1421 rplP rpsC TRUE 0.999 3.000 0.828 0.032 Y NA
 2324755 2324756 CUP1421 CUP1422 rpsC   TRUE 0.998 1.000 0.719 0.032 Y NA
 2324756 2324757 CUP1422 CUP1423   rpsS TRUE 0.994 13.000 0.769 0.032 Y NA
 2324757 2324758 CUP1423 CUP1424 rpsS rplB TRUE 0.998 2.000 0.820 0.032 Y NA
 2324758 2324759 CUP1424 CUP1425 rplB rplW TRUE 0.998 2.000 0.849 1.000 Y NA
 2324759 2324760 CUP1425 CUP1426 rplW rplD TRUE 0.997 3.000 0.513 1.000 Y NA
 2324760 2324761 CUP1426 CUP1427 rplD rplC TRUE 0.995 -3.000 0.361 0.024 Y NA
 2324761 2324762 CUP1427 CUP1428 rplC rpsJ TRUE 0.994 11.000 0.467 0.032 Y NA
 2324762 2324763 CUP1428 CUP1429 rpsJ rluC FALSE 0.102 119.000 0.000 1.000 Y NA
 2324764 2324765 CUP1430 CUP1431 purB   TRUE 0.923 12.000 0.012 1.000 Y NA
 2324766 2324767 CUP1432 CUP1433     FALSE 0.082 66.000 0.000 NA   NA
 2324767 2324768 CUP1433 CUP1434     TRUE 0.932 -13.000 0.028 1.000   NA
 2324769 2324770 CUP1435 CUP1436     TRUE 0.931 10.000 0.011 0.030   NA
 2324770 2324771 CUP1436 CUP1437     TRUE 0.809 -3.000 0.000 NA   NA
 2324772 2324773 CUP1438 CUP1439     TRUE 0.796 -10.000 0.000 NA   NA
 2324774 2324775 CUP1440 CUP1441     FALSE 0.033 127.000 0.000 NA   NA
 2324778 2324779 CUP0139 CUP0138   hemU-2 TRUE 0.934 32.000 0.250 0.027 Y NA
 2324779 2324780 CUP0138 CUP0137 hemU-2 hemV-1 TRUE 0.992 -3.000 0.226 1.000 Y NA
 2324780 2324781 CUP0137 CUP0136 hemV-1   TRUE 0.986 -3.000 0.113 1.000 Y NA
 2324782 2324783 CUP0135 CUP0134     TRUE 0.980 -3.000 0.148 0.079 N NA
 2324783 2324784 CUP0134 CUP0133     TRUE 0.998 -7.000 0.815 0.032 Y NA
 2324786 2324787 CUP0131 CUP0130     TRUE 0.971 -3.000 0.104 1.000   NA
 2324787 2324788 CUP0130 CUP0129     TRUE 0.985 -7.000 0.227 1.000   NA
 2324788 2324789 CUP0129 CUP0128     TRUE 0.988 -7.000 0.318 NA   NA
 2324789 2324790 CUP0128 CUP0127     TRUE 0.987 3.000 0.269 NA   NA
 2324790 2324791 CUP0127 CUP0126   hemL TRUE 0.991 -3.000 0.462 1.000   NA
 2324791 2324792 CUP0126 CUP0125 hemL   TRUE 0.982 0.000 0.212 1.000   NA
 2324792 2324793 CUP0125 CUP0124   pglD TRUE 0.820 0.000 0.000 1.000   NA
 2324793 2324794 CUP0124 CUP0123 pglD pglC TRUE 0.952 -13.000 0.074 1.000   NA
 2324794 2324795 CUP0123 CUP0122 pglC pglA TRUE 0.989 -7.000 0.128 1.000 Y NA
 2324795 2324796 CUP0122 CUP0121 pglA pglB TRUE 0.955 -3.000 0.045 1.000   NA
 2324796 2324797 CUP0121 CUP0120 pglB pglJ TRUE 0.988 -3.000 0.375 1.000   NA
 2324797 2324798 CUP0120 CUP0119 pglJ pglI TRUE 0.989 -12.000 0.208 NA Y NA
 2324798 2324799 CUP0119 CUP0118 pglI pglH TRUE 0.992 -3.000 0.267 NA Y NA
 2324799 2324800 CUP0118 CUP0117 pglH wlaB TRUE 0.984 6.000 0.179 1.000 N NA
 2324800 2324801 CUP0117 CUP0116 wlaB galE TRUE 0.971 -6.000 0.086 1.000 N NA
 2324801 2324802 CUP0116 CUP0115 galE wlaX TRUE 0.567 46.000 0.086 1.000 N NA
 2324803 2324804 CUP0114 CUP0113 waaC   TRUE 0.991 -10.000 0.231 1.000 Y NA
 2324804 2324805 CUP0113 CUP0112     TRUE 0.980 -3.000 0.050 1.000 Y NA
 2324805 2324806 CUP0112 CUP0111     TRUE 0.963 -3.000 0.011 1.000 Y NA
 2324807 2324808 CUP0110 CUP0109     TRUE 0.991 -24.000 0.900 NA   NA
 2324808 2324809 CUP0109 CUP0108   gyrA FALSE 0.210 58.000 0.008 NA   NA
 2324809 2324810 CUP0108 CUP0107 gyrA ctsW FALSE 0.393 38.000 0.007 1.000   NA
 2324810 2324811 CUP0107 CUP0106 ctsW   TRUE 0.977 -3.000 0.152 NA   NA
 2324812 2324813 CUP0105 CUP0104 murD   TRUE 0.831 9.000 0.000 1.000 N NA
 2324813 2324814 CUP0104 CUP0103     TRUE 0.948 2.000 0.026 NA   NA
 2324814 2324815 CUP0103 CUP0102   ppk FALSE 0.114 56.000 0.000 NA   NA
 2324820 2324821 CUP0097 CUP0096   dapA TRUE 0.983 0.000 0.238 1.000 N NA
 2324821 2324822 CUP0096 CUP0095 dapA   TRUE 0.984 -7.000 0.217 1.000   NA
 2324822 2324823 CUP0095 CUP0094   pyrD TRUE 0.956 -3.000 0.048 1.000   NA
 2324823 2324824 CUP0094 CUP0093 pyrD msbA FALSE 0.449 39.000 0.017 1.000 N NA
 2324824 2324825 CUP0093 CUP0092 msbA cysS TRUE 0.919 0.000 0.013 1.000 N NA
 2324825 2324826 CUP0092 CUP0091 cysS mviN TRUE 0.931 -13.000 0.027 1.000   NA
 2324826 2324827 CUP0091 CUP0090 mviN   FALSE 0.111 58.000 0.000 1.000   NA
 2324827 2324828 CUP0090 CUP0089     TRUE 0.600 28.000 0.000 1.000 Y NA
 2324830 2324831 CUP0087 CUP0086   hyaC TRUE 0.934 30.000 0.277 1.000 Y NA
 2324831 2324832 CUP0086 CUP0085 hyaC   TRUE 0.993 10.000 0.270 0.040 Y NA
 2324832 2324833 CUP0085 CUP0084     TRUE 0.999 3.000 0.951 0.001 Y NA
 2324833 2324834 CUP0084 CUP0083     FALSE 0.089 105.000 0.009 1.000 N NA
 2324834 2324835 CUP0083 CUP0082     TRUE 0.932 -3.000 0.020 1.000 N NA
 2324835 2324836 CUP0082 CUP0081     TRUE 0.958 0.000 0.050 1.000   NA
 2324836 2324837 CUP0081 CUP0080   tyrS TRUE 0.955 -3.000 0.043 1.000   NA
 2324837 2324838 CUP0080 CUP0079 tyrS spoT TRUE 0.875 13.000 0.045 1.000 N NA
 2324838 2324839 CUP0079 CUP0078 spoT rpoZ TRUE 0.950 -16.000 0.018 1.000 Y NA
 2324839 2324840 CUP0078 CUP0077 rpoZ pyrH TRUE 0.657 17.000 0.004 1.000 N NA
 2324840 2324841 CUP0077 CUP0076 pyrH   FALSE 0.266 51.000 0.009 1.000 N NA
 2324841 2324842 CUP0076 CUP0075     TRUE 0.959 -3.000 0.057 1.000   NA
 2324842 2324843 CUP0075 CUP0074     TRUE 0.927 -13.000 0.024 1.000   NA
 2324843 2324844 CUP0074 CUP0073     FALSE 0.475 48.000 0.044 1.000   NA
 2324844 2324845 CUP0073 CUP0072     TRUE 0.959 0.000 0.060 NA   NA
 2324845 2324846 CUP0072 CUP0071   rluD TRUE 0.836 -52.000 0.031 NA   NA
 2324847 2324848 CUP0070 CUP_tRNA-Met-1 rodA   FALSE 0.101 60.000 0.000 NA   NA
 2324848 2324849 CUP_tRNA-Met-1 CUP0068     FALSE 0.160 47.000 0.000 NA   NA
 2324849 2324850 CUP0068 CUP0067     FALSE 0.144 50.000 0.000 NA   NA
 2324850 2324851 CUP0067 CUP0066     TRUE 0.809 -3.000 0.000 NA   NA
 2324851 2324852 CUP0066 CUP0065     TRUE 0.715 -16.000 0.000 NA   NA
 2324852 2324853 CUP0065 CUP0064     TRUE 0.598 -28.000 0.000 NA   NA
 2324853 2324854 CUP0064 CUP0063     TRUE 0.835 -6.000 0.000 NA   NA
 2324854 2324855 CUP0063 CUP0062     TRUE 0.927 0.000 0.015 1.000   NA
 2324855 2324856 CUP0062 CUP0061     TRUE 0.954 -3.000 0.043 1.000   NA
 2324856 2324857 CUP0061 CUP0060     TRUE 0.965 -3.000 0.083 NA   NA
 2324857 2324858 CUP0060 CUP0059     FALSE 0.495 45.000 0.037 NA   NA
 2324859 2324860 CUP0058 CUP0057 argS   TRUE 0.906 10.000 0.011 1.000 N NA
 2324860 2324861 CUP0057 CUP0056   gmk TRUE 0.911 2.000 0.009 1.000 N NA
 2324861 2324862 CUP0056 CUP0055 gmk   TRUE 0.887 -3.000 0.002 NA   NA
 2324862 2324863 CUP0055 CUP0054   fliR FALSE 0.121 55.000 0.000 NA   NA
 2324863 2324864 CUP0054 CUP0053 fliR   TRUE 0.932 -13.000 0.032 1.000 N NA
 2324864 2324865 CUP0053 CUP0052   tsf TRUE 0.935 2.000 0.019 1.000 N NA
 2324865 2324866 CUP0052 CUP0051 tsf rpsB TRUE 0.997 0.000 0.748 1.000 Y NA
 2324866 2324867 CUP0051 CUP0050 rpsB   FALSE 0.065 117.000 0.003 1.000 N NA
 2324867 2324868 CUP0050 CUP0049   petC FALSE 0.184 127.000 0.087 1.000 N NA
 2324868 2324869 CUP0049 CUP0048 petC petB TRUE 0.989 -3.000 0.103 0.002 Y NA
 2324869 2324870 CUP0048 CUP0047 petB petA TRUE 0.989 2.000 0.093 0.002 Y NA
 2324870 2324871 CUP0047 CUP0046 petA gidA FALSE 0.062 124.000 0.003 1.000 N NA
 2324871 2324872 CUP0046 CUP0045 gidA   FALSE 0.209 56.000 0.004 1.000   NA
 2324872 2324873 CUP0045 CUP0044     TRUE 0.995 3.000 0.556 0.009   NA
 2324873 2324874 CUP0044 CUP0043     TRUE 0.628 90.000 0.444 0.009   NA
 2324875 2324876 CUP0042 CUP0041   dctA FALSE 0.101 60.000 0.000 NA   NA
 2324877 2324878 CUP0040 CUP0039     TRUE 0.826 -7.000 0.000 NA   NA
 2324880 2324881 CUP0037 CUP0036   hit TRUE 0.915 -16.000 0.030 NA   NA
 2324881 2324882 CUP0036 CUP0035 hit trpC TRUE 0.945 0.000 0.026 1.000 N NA
 2324882 2324883 CUP0035 CUP0034 trpC   TRUE 0.940 -13.000 0.044 1.000   NA
 2324883 2324884 CUP0034 CUP0033     TRUE 0.953 -27.000 0.228 NA   NA
 2324884 2324885 CUP0033 CUP0032     TRUE 0.913 -22.000 0.064 NA   NA
 2324885 2324886 CUP0032 CUP_CutmRNA1     TRUE 0.560 14.000 0.000 NA   NA
 2324886 2324887 CUP_CutmRNA1 CUP0030     TRUE 0.833 3.000 0.000 NA   NA
 2324888 2324889 CUP0029 CUP0028     TRUE 0.863 10.000 0.000 0.009   NA
 2324889 2324890 CUP0028 CUP0027     TRUE 0.727 11.000 0.000 1.000   NA
 2324890 2324891 CUP0027 CUP0026     TRUE 0.967 10.000 0.100 NA   NA
 2324891 2324892 CUP0026 CUP0025     TRUE 0.812 0.000 0.000 NA   NA
 2324892 2324893 CUP0025 CUP0024     FALSE 0.098 61.000 0.000 NA   NA
 2324893 2324894 CUP0024 CUP0023     FALSE 0.023 361.000 0.000 NA   NA
 2324894 2324895 CUP0023 CUP0022   polA FALSE 0.383 51.000 0.000 0.062 Y NA
 2324895 2324896 CUP0022 CUP0021 polA   TRUE 0.684 16.000 0.006 1.000 N NA
 2324896 2324897 CUP0021 CUP0020     TRUE 0.989 3.000 0.119 1.000 Y NA
 2324900 2324901 CUP0017 CUP0016 tpx   FALSE 0.042 104.000 0.000 NA   NA
 2324901 2324902 CUP0016 CUP0015   uvrD FALSE 0.036 117.000 0.000 NA   NA
 2324903 2324904 CUP0014 CUP0013   valS TRUE 0.753 13.000 0.005 NA   NA
 2324904 2324905 CUP0013 CUP0012 valS   TRUE 0.908 2.000 0.007 1.000 N NA
 2324905 2324906 CUP0012 CUP0011     TRUE 0.878 57.000 0.511 1.000 Y NA
 2324906 2324907 CUP0011 CUP0010     FALSE 0.397 161.000 0.154 NA Y NA
 2324907 2324908 CUP0010 CUP0009     TRUE 0.964 39.000 0.800 NA Y NA
 2324908 2324909 CUP0009 CUP0008     TRUE 0.998 10.000 1.000 NA Y NA
 2324909 2324910 CUP0008 CUP0007     TRUE 0.953 9.000 0.028 NA N NA
 2324910 2324911 CUP0007 CUP0006   ubiX TRUE 0.979 -3.000 0.191 NA N NA
 2324911 2324912 CUP0006 CUP0005 ubiX   TRUE 0.815 2.000 0.000 1.000 N NA
 2324913 2324914 CUP0004 CUP0003     TRUE 0.545 -42.000 0.000 NA   NA
 2324914 2324915 CUP0003 CUP0002     FALSE 0.134 52.000 0.000 NA   NA
 2324915 2324916 CUP0002 CUP0001     FALSE 0.340 27.000 0.000 NA   NA
 2324917 2324918 CUP1119 CUP1120 aroK   TRUE 0.788 -12.000 0.000 1.000   NA
 2324918 2324919 CUP1120 CUP1121     TRUE 0.957 -10.000 0.062 1.000   NA
 2324919 2324920 CUP1121 CUP1122     TRUE 0.817 -3.000 0.000 1.000   NA
 2324923 2324924 CUP1125 CUP1126     TRUE 0.996 0.000 0.509 1.000 Y NA
 2324924 2324925 CUP1126 CUP1127   psaC TRUE 0.997 -7.000 0.616 1.000 Y NA
 2324925 2324926 CUP1127 CUP1128 psaC flgG_1 FALSE 0.082 65.000 0.000 1.000 N NA
 2324926 2324927 CUP1128 CUP1129 flgG_1 flgG TRUE 0.964 27.000 0.377 0.008 Y NA
 2324928 2324929 CUP1130 CUP1131 hpkA   TRUE 0.948 8.000 0.019 1.000   NA
 2324933 2324934 CUP1135 CUP1136     TRUE 0.991 -3.000 0.467 NA   NA
 2324934 2324935 CUP1136 CUP1137     FALSE 0.148 49.000 0.000 NA   NA
 2324935 2324936 CUP1137 CUP1138     TRUE 0.809 -3.000 0.000 NA   NA
 2324936 2324937 CUP1138 CUP1139     TRUE 0.974 -7.000 0.115 NA   NA
 2324937 2324938 CUP1139 CUP1140     TRUE 0.962 -3.000 0.065 1.000   NA
 2324938 2324939 CUP1140 CUP1141     TRUE 0.837 -4.000 0.000 NA   NA
 2324939 2324940 CUP1141 CUP1142   carB TRUE 0.848 5.000 0.000 NA   NA
 2324940 2324941 CUP1142 CUP1143 carB   FALSE 0.256 58.000 0.016 1.000 N NA
 2324941 2324942 CUP1143 CUP1144     TRUE 0.994 -10.000 0.689 1.000 N NA
 2324942 2324943 CUP1144 CUP1145   clpX TRUE 0.918 11.000 0.034 1.000 N NA
 2324943 2324944 CUP1145 CUP1146 clpX lpxA TRUE 0.950 -7.000 0.027 1.000 N NA
 2324944 2324945 CUP1146 CUP1147 lpxA fabZ TRUE 0.987 8.000 0.264 1.000 N NA
 2324945 2324946 CUP1147 CUP1148 fabZ   FALSE 0.069 73.000 0.000 NA   NA
 2324946 2324947 CUP1148 CUP1149     TRUE 0.809 -3.000 0.000 NA   NA
 2324947 2324948 CUP1149 CUP1150   bcp TRUE 0.899 -3.000 0.006 NA   NA
 2324948 2324949 CUP1150 CUP1151 bcp   TRUE 0.910 -3.000 0.008 1.000   NA
 2324950 2324951 CUP1152 CUP1153     TRUE 0.999 -3.000 1.000 0.002 Y NA
 2324951 2324952 CUP1153 CUP1154     TRUE 0.989 -10.000 0.182 1.000 Y NA
 2324952 2324953 CUP1154 CUP1155     TRUE 0.996 -13.000 0.692 1.000 Y NA
 2324953 2324954 CUP1155 CUP1156     TRUE 0.961 -16.000 0.154 1.000 N NA
 2324954 2324955 CUP1156 CUP1157     TRUE 0.937 0.000 0.022 1.000 N NA
 2324955 2324956 CUP1157 CUP1158   ilvE TRUE 0.543 45.000 0.008 1.000 Y NA
 2324956 2324957 CUP1158 CUP1159 ilvE   TRUE 0.966 10.000 0.098 1.000 N NA
 2324957 2324958 CUP1159 CUP1160     FALSE 0.328 70.000 0.075 NA   NA
 2324958 2324959 CUP1160 CUP1161     TRUE 0.996 0.000 0.867 NA   NA
 2324959 2324960 CUP1161 CUP1162     TRUE 0.820 2.000 0.000 NA   NA
 2324961 2324962 CUP1163 CUP1164   dapF TRUE 0.806 -25.000 0.010 1.000   NA
 2324962 2324963 CUP1164 CUP1165 dapF   TRUE 0.935 3.000 0.016 1.000 N NA
 2324964 2324965 CUP1166 CUP1167 purM   TRUE 0.882 -3.000 0.003 NA N NA
 2324965 2324966 CUP1167 CUP1168     FALSE 0.499 -139.000 0.000 NA   NA
 2324966 2324967 CUP1168 CUP1169     TRUE 0.681 -19.000 0.000 NA   NA
 2324967 2324968 CUP1169 CUP1170     FALSE 0.025 282.000 0.000 NA   NA
 2324971 2324972 CUP1173 CUP1174     TRUE 0.995 -7.000 0.418 1.000 Y NA
 2324972 2324973 CUP1174 CUP1175     TRUE 0.809 -3.000 0.000 NA   NA
 2324973 2324974 CUP1175 CUP1176     TRUE 0.812 0.000 0.000 NA   NA
 2324974 2324975 CUP1176 CUP1177     TRUE 0.964 -13.000 0.131 1.000 N NA
 2324975 2324976 CUP1177 CUP1178     TRUE 0.976 -3.000 0.144 1.000   NA
 2324976 2324977 CUP1178 CUP1179     TRUE 0.937 -19.000 0.088 1.000   NA
 2324977 2324978 CUP1179 CUP1180     TRUE 0.988 -3.000 0.131 1.000 Y NA
 2324978 2324979 CUP1180 CUP1181     TRUE 0.993 -19.000 0.549 1.000 Y NA
 2324979 2324980 CUP1181 CUP1182     TRUE 0.849 6.000 0.000 NA   NA
 2324980 2324981 CUP1182 CUP1183     FALSE 0.214 39.000 0.000 NA   NA
 2324981 2324982 CUP1183 CUP1184     TRUE 0.848 5.000 0.000 NA   NA
 2324982 2324983 CUP1184 CUP1185     FALSE 0.045 99.000 0.000 NA   NA
 2324983 2324984 CUP1185 CUP1186     FALSE 0.144 50.000 0.000 NA   NA
 2324984 2324985 CUP1186 CUP1187     FALSE 0.307 30.000 0.000 NA   NA
 2324987 2324988 CUP1189 CUP1190     TRUE 0.882 -7.000 0.000 0.011   NA
 2324989 2324990 CUP1191 CUP1192 gatB   TRUE 0.806 10.000 0.000 1.000   NA
 2324990 2324991 CUP1192 CUP1193     TRUE 0.976 -3.000 0.143 1.000   NA
 2324991 2324992 CUP1193 CUP1194     TRUE 0.959 -7.000 0.043 1.000   NA
 2324992 2324993 CUP1194 CUP1195     FALSE 0.051 90.000 0.000 NA   NA
 2324993 2324994 CUP1195 CUP1196     FALSE 0.067 75.000 0.000 NA   NA
 2324994 2324995 CUP1196 CUP1197     FALSE 0.045 100.000 0.000 NA   NA
 2324995 2324996 CUP1197 CUP1198     FALSE 0.072 71.000 0.000 NA   NA
 2324997 2324998 CUP1199 CUP1200     TRUE 0.650 12.000 0.000 NA   NA
 2324999 2325000 CUP1201 CUP1202     FALSE 0.414 23.000 0.000 NA   NA
 2325001 2325002 CUP1203 CUP1204 fliI   FALSE 0.426 22.000 0.000 1.000 N NA
 2325002 2325003 CUP1204 CUP1205     TRUE 0.936 -3.000 0.021 NA   NA
 2325003 2325004 CUP1205 CUP1206     TRUE 0.992 -3.000 0.523 NA   NA
 2325004 2325005 CUP1206 CUP1207     TRUE 0.956 9.000 0.029 NA   NA
 2325005 2325006 CUP1207 CUP1208   accD TRUE 0.947 -10.000 0.035 NA   NA
 2325006 2325007 CUP1208 CUP1209 accD omp85 TRUE 0.884 10.000 0.004 1.000 N NA
 2325008 2325009 CUP1210 CUP1211     FALSE 0.077 67.000 0.000 1.000 N NA
 2325009 2325010 CUP1211 CUP1212   lpxC TRUE 0.929 -3.000 0.000 1.000 Y NA
 2325010 2325011 CUP1212 CUP1213 lpxC   TRUE 0.593 36.000 0.035 NA   NA
 2325011 2325012 CUP1213 CUP1214   thrB TRUE 0.961 8.000 0.032 NA   NA
 2325012 2325013 CUP1214 CUP1215 thrB   TRUE 0.959 -6.000 0.044 NA N NA
 2325013 2325014 CUP1215 CUP1216   infB TRUE 0.970 -13.000 0.171 NA N NA
 2325014 2325015 CUP1216 CUP1217 infB rbfA TRUE 0.996 -3.000 0.530 1.000 Y NA
 2325015 2325016 CUP1217 CUP1218 rbfA   TRUE 0.946 -10.000 0.033 NA   NA
 2325017 2325018 CUP1219 CUP1220     TRUE 0.812 0.000 0.000 NA   NA
 2325019 2325020 CUP1221 CUP1222     TRUE 0.922 -28.000 0.107 1.000   NA
 2325020 2325021 CUP1222 CUP1223   murE TRUE 0.921 -19.000 0.057 1.000   NA
 2325021 2325022 CUP1223 CUP1224 murE   TRUE 0.904 1.000 0.006 NA   NA
 2325022 2325023 CUP1224 CUP1225     TRUE 0.912 -3.000 0.010 NA   NA
 2325023 2325024 CUP1225 CUP1226   ispA TRUE 0.826 30.000 0.167 1.000   NA
 2325024 2325025 CUP1226 CUP1227 ispA tkt TRUE 0.987 10.000 0.375 1.000 N NA
 2325025 2325026 CUP1227 CUP1228 tkt   TRUE 0.937 -24.000 0.132 1.000 N NA
 2325026 2325027 CUP1228 CUP1229     TRUE 0.998 0.000 0.912 1.000 Y NA
 2325027 2325028 CUP1229 CUP1230     TRUE 0.998 3.000 0.912 NA Y NA
 2325028 2325029 CUP1230 CUP1231     TRUE 0.972 -3.000 0.120 NA   NA
 2325029 2325030 CUP1231 CUP1232     FALSE 0.384 53.000 0.027 NA   NA
 2325030 2325031 CUP1232 CUP1233     FALSE 0.057 84.000 0.000 NA   NA
 2325031 2325032 CUP1233 CUP1234   dmpI FALSE 0.121 55.000 0.000 NA   NA
 2325033 2325034 CUP1235 CUP1236     FALSE 0.047 173.000 0.000 0.004   NA
 2325035 2325036 CUP1237 CUP1238 radA dapB FALSE 0.134 51.000 0.000 1.000 N NA
 2325036 2325037 CUP1238 CUP1239 dapB purF TRUE 0.942 1.000 0.022 1.000 N NA
 2325037 2325038 CUP1239 CUP1240 purF pyrC TRUE 0.939 3.000 0.000 1.000 Y NA
 2325039 2325040 CUP1241 CUP1242   glcD TRUE 0.828 2.000 0.000 1.000   NA
 2325040 2325041 CUP1242 CUP1243 glcD   TRUE 0.988 -10.000 0.404 NA   NA
 2325043 2325044 CUP1245 CUP1246     TRUE 0.812 0.000 0.000 NA   NA
 2325044 2325045 CUP1246 CUP1247     TRUE 0.826 -7.000 0.000 NA   NA
 2325045 2325046 CUP1247 CUP1248   rmlA2 FALSE 0.062 79.000 0.000 NA   NA
 2325046 2325047 CUP1248 CUP1249 rmlA2 gmhA TRUE 0.977 0.000 0.154 1.000 N NA
 2325047 2325048 CUP1249 CUP1250 gmhA   TRUE 0.977 -3.000 0.148 1.000   NA
 2325048 2325049 CUP1250 CUP1251     TRUE 0.590 38.000 0.050 NA   NA
 2325049 2325050 CUP1251 CUP1252     TRUE 0.960 10.000 0.074 NA   NA
 2325050 2325051 CUP1252 CUP1253   gmd FALSE 0.382 24.000 0.000 NA   NA
 2325051 2325052 CUP1253 CUP1254 gmd   TRUE 0.798 10.000 0.000 NA   NA
 2325052 2325053 CUP1254 CUP1255   fcl FALSE 0.208 41.000 0.000 1.000   NA
 2325053 2325054 CUP1255 CUP1256 fcl   TRUE 0.934 2.000 0.000 1.000 Y NA
 2325054 2325055 CUP1256 CUP1257   fcl TRUE 0.996 2.000 0.500 1.000 Y NA
 2325055 2325056 CUP1257 CUP1258 fcl fcl TRUE 0.994 -18.000 0.500 0.002 Y NA
 2325056 2325057 CUP1258 CUP1259 fcl   TRUE 0.826 -7.000 0.000 NA   NA
 2325058 2325059 CUP1501 CUP1502     TRUE 0.836 9.000 0.000 NA   NA
 2325062 2325063 CUP_Cu5SE CUP1506 rrfE   TRUE 0.848 7.000 0.000 NA   NA
 2325063 2325064 CUP1506 CUP_Cu23SD   rrlD FALSE 0.025 252.000 0.000 NA   NA
 2325064 2325065 CUP_Cu23SD CUP1508 rrlD   FALSE 0.031 160.000 0.000 NA   NA
 2325065 2325066 CUP1508 CUP1509   metK FALSE 0.023 379.000 0.000 NA   NA
 2325066 2325067 CUP1509 CUP1510 metK   FALSE 0.024 400.000 0.000 1.000   NA
 2325067 2325068 CUP1510 CUP1511     TRUE 0.956 5.000 0.011 0.002   NA
 2325068 2325069 CUP1511 CUP_tRNA-Ile-3     FALSE 0.022 454.000 0.000 NA   NA
 2325069 2325070 CUP_tRNA-Ile-3 CUP_tRNA-Ala-4     TRUE 0.846 8.000 0.000 NA   NA
 2325070 2325071 CUP_tRNA-Ala-4 CUP_Cu16SC   rrsC FALSE 0.037 114.000 0.000 NA   NA
 2325071 2325072 CUP_Cu16SC CUP1515 rrsC   FALSE 0.024 349.000 0.000 NA   NA
 2325072 2325073 CUP1515 CUP1516     FALSE 0.262 96.000 0.095 NA   NA
 2325073 2325074 CUP1516 CUP1517     TRUE 0.971 -16.000 0.237 NA   NA
 2325074 2325075 CUP1517 CUP1518     FALSE 0.175 45.000 0.000 NA   NA
 2325075 2325076 CUP1518 CUP1519     TRUE 0.620 -25.000 0.000 NA   NA
 2325076 2325077 CUP1519 CUP1520     TRUE 0.512 -76.000 0.000 NA   NA
 2325077 2325078 CUP1520 CUP1521     FALSE 0.448 21.000 0.000 NA   NA
 2325079 2325080 CUP1522 CUP1523   phnA TRUE 0.962 0.000 0.009 1.000 Y NA
 2325080 2325081 CUP1523 CUP1524 phnA   TRUE 0.925 9.000 0.009 1.000   NA
 2325082 2325083 CUP1525 CUP1526 dnaE   FALSE 0.064 77.000 0.000 NA   NA
 2325083 2325084 CUP1526 CUP1527   thiJ FALSE 0.027 211.000 0.000 NA   NA
 2325084 2325085 CUP1527 CUP1528 thiJ   FALSE 0.148 49.000 0.000 NA   NA
 2325085 2325086 CUP1528 CUP1529     FALSE 0.073 70.000 0.000 NA   NA
 2325086 2325087 CUP1529 CUP1530     TRUE 0.962 9.000 0.047 NA   NA
 2325087 2325088 CUP1530 CUP1531   moaC TRUE 0.931 11.000 0.057 NA   NA
 2325089 2325090 CUP1532 CUP1533   proP TRUE 0.812 0.000 0.000 NA   NA
 2325091 2325092 CUP1534 CUP1535     TRUE 0.937 20.000 0.333 NA   NA
 2325092 2325093 CUP1535 CUP1536   rplT FALSE 0.042 98.000 0.000 NA N NA
 2325093 2325094 CUP1536 CUP1537 rplT   TRUE 0.904 86.000 0.928 0.023 Y NA
 2325095 2325096 CUP1538 CUP1539     FALSE 0.127 54.000 0.000 NA   NA
 2325096 2325097 CUP1539 CUP1540     FALSE 0.434 136.000 0.429 NA   NA
 2325097 2325098 CUP1540 CUP1541     FALSE 0.352 61.000 0.052 1.000 N NA
 2325098 2325099 CUP1541 CUP1542     TRUE 0.905 10.000 0.011 1.000 N NA
 2325100 2325101 CUP1543 CUP1544   pgi FALSE 0.143 79.000 0.011 1.000 N NA
 2325101 2325102 CUP1544 CUP1545 pgi galU TRUE 0.949 -6.000 0.023 1.000 N NA
 2325102 2325103 CUP1545 CUP1546 galU   FALSE 0.023 442.000 0.000 NA   NA
 2325106 2325107 CUP1549 CUP1550     FALSE 0.461 20.000 0.000 NA   NA
 2325108 2325109 CUP1551 CUP1552     FALSE 0.033 129.000 0.000 NA   NA
 2325109 2325110 CUP1552 CUP1553     FALSE 0.026 223.000 0.000 NA   NA
 2325112 2325113 CUP1555 CUP1556   rpmA FALSE 0.023 434.000 0.000 NA   NA
 2325113 2325114 CUP1556 CUP1557 rpmA rplU TRUE 0.997 10.000 0.667 0.023 Y NA
 2325114 2325115 CUP1557 CUP1558 rplU   FALSE 0.078 107.000 0.005 NA   NA
 2325115 2325116 CUP1558 CUP1559     TRUE 0.982 11.000 0.414 NA   NA
 2325116 2325117 CUP1559 CUP1560     FALSE 0.338 72.000 0.087 NA   NA
 2325117 2325118 CUP1560 CUP1561     TRUE 0.968 16.000 0.516 NA   NA
 2325118 2325119 CUP1561 CUP1562     TRUE 0.972 12.000 0.372 NA   NA
 2325120 2325121 CUP1563 CUP1564 dapD sdaC TRUE 0.922 10.000 0.000 NA Y NA
 2325123 2325124 CUP1566 CUP1567     FALSE 0.023 358.000 0.000 NA   NA
 2325124 2325125 CUP1567 CUP1568     TRUE 0.798 10.000 0.000 NA   NA
 2325125 2325126 CUP1568 CUP1569     FALSE 0.028 194.000 0.000 NA   NA
 2325127 2325128 CUP_tRNA-Ser-3 CUP_tRNA-Cys-1     TRUE 0.844 4.000 0.000 NA   NA
 2325128 2325129 CUP_tRNA-Cys-1 CUP_tRNA-Leu-4     FALSE 0.382 24.000 0.000 NA   NA
 2325129 2325130 CUP_tRNA-Leu-4 CUP_tRNA-Gly-2     TRUE 0.844 4.000 0.000 NA   NA
 2325130 2325131 CUP_tRNA-Gly-2 CUP1574     FALSE 0.098 61.000 0.000 NA   NA
 2325132 2325133 CUP1575 CUP1576 mutY   TRUE 0.805 -10.000 0.000 1.000   NA
 2325133 2325134 CUP1576 CUP1577   mod_1 FALSE 0.119 56.000 0.000 1.000   NA
 2325134 2325135 CUP1577 CUP1578 mod_1 res_1 TRUE 0.969 -19.000 0.200 0.058   NA
 2325135 2325136 CUP1578 CUP1579 res_1   FALSE 0.080 69.000 0.000 1.000   NA
 2325138 2325139 CUP1581 CUP1582 aspA   TRUE 0.881 24.000 0.195 1.000   NA
 2325139 2325140 CUP1582 CUP1583     FALSE 0.058 83.000 0.000 NA   NA
 2325140 2325141 CUP1583 CUP1584     FALSE 0.035 121.000 0.000 NA   NA
 2325141 2325142 CUP1584 CUP1585     TRUE 0.833 3.000 0.000 NA   NA
 2325142 2325143 CUP1585 CUP1586     FALSE 0.022 623.000 0.000 NA   NA
 2325143 2325144 CUP1586 CUP1587     TRUE 0.650 -22.000 0.000 NA   NA
 2325146 2325147 CUP1589 CUP1590     TRUE 0.796 -10.000 0.000 NA   NA
 2325147 2325148 CUP1590 CUP1591     TRUE 0.812 0.000 0.000 NA   NA
 2325150 2325151 CUP1593 CUP1594     TRUE 0.849 6.000 0.000 NA   NA
 2325153 2325154 CUP1596 CUP1597     FALSE 0.287 43.000 0.000 0.001   NA
 2325154 2325155 CUP1597 CUP1598     TRUE 0.968 -3.000 0.091 1.000   NA
 2325155 2325156 CUP1598 CUP1599     TRUE 0.988 9.000 0.273 1.000   NA
 2325157 2325158 CUP1600 CUP1601     TRUE 0.804 -3.000 0.000 1.000 N NA
 2325158 2325159 CUP1601 CUP1602     TRUE 0.969 -3.000 0.105 1.000 N NA
 2325159 2325160 CUP1602 CUP1603     TRUE 0.715 -16.000 0.000 NA   NA
 2325161 2325162 CUP1604 CUP1605     FALSE 0.099 97.000 0.007 NA   NA
 2325162 2325163 CUP1605 CUP1606   frr TRUE 0.922 10.000 0.017 1.000 N NA
 2325163 2325164 CUP1606 CUP1607 frr pyrE TRUE 0.951 3.000 0.026 1.000 N NA
 2325164 2325165 CUP1607 CUP1608 pyrE   TRUE 0.963 0.000 0.071 NA   NA
 2325165 2325166 CUP1608 CUP1609     TRUE 0.970 3.000 0.086 NA   NA
 2325166 2325167 CUP1609 CUP1610     TRUE 0.833 -94.000 0.048 1.000 N NA
 2325168 2325169 CUP1611 CUP1612     TRUE 0.624 52.000 0.174 1.000 N NA
 2325169 2325170 CUP1612 CUP1613     TRUE 0.985 2.000 0.217 0.073 N NA
 2325170 2325171 CUP1613 CUP1614     TRUE 0.998 -13.000 1.000 0.029 Y NA
 2325171 2325172 CUP1614 CUP1615     TRUE 0.994 12.000 1.000 0.029 N NA
 2325172 2325173 CUP1615 CUP1616     TRUE 0.911 11.000 0.027 NA   NA
 2325174 2325175 CUP1617 CUP1618     TRUE 0.997 0.000 0.618 0.025 Y NA
 2325175 2325176 CUP1618 CUP1619   potA TRUE 0.989 -13.000 0.529 1.000 N NA
 2325176 2325177 CUP1619 CUP1620 potA   TRUE 0.682 36.000 0.014 1.000 Y NA
 2325177 2325178 CUP1620 CUP1621     TRUE 0.826 -7.000 0.000 NA   NA
 2325178 2325179 CUP1621 CUP1622   purA FALSE 0.033 131.000 0.000 NA   NA
 2325179 2325180 CUP1622 CUP1623 purA   TRUE 0.923 -3.000 0.014 NA   NA
 2325180 2325181 CUP1623 CUP1624     TRUE 0.978 -7.000 0.147 NA   NA
 2325181 2325182 CUP1624 CUP1625     FALSE 0.425 66.000 0.120 NA   NA
 2325182 2325183 CUP1625 CUP1626   carA TRUE 0.952 -3.000 0.041 NA   NA
 2325183 2325184 CUP1626 CUP1627 carA   TRUE 0.917 -3.000 0.011 1.000   NA
 2325185 2325186 CUP1628 CUP1629 rnhB rr2 TRUE 0.887 0.000 0.002 1.000 N NA
 2325186 2325187 CUP1629 CUP1630 rr2 flgG-1 FALSE 0.045 98.000 0.000 1.000 N NA
 2325187 2325188 CUP1630 CUP1631 flgG-1   TRUE 0.995 4.000 0.341 NA Y NA
 2325188 2325189 CUP1631 CUP1632     TRUE 0.593 56.000 0.184 NA   NA
 2325189 2325190 CUP1632 CUP1633     TRUE 0.949 15.000 0.286 1.000   NA
 2325191 2325192 CUP1634 CUP1635 typA   TRUE 0.900 0.000 0.006 NA   NA
 2325195 2325196 CUP1638 CUP1639     FALSE 0.025 308.000 0.000 NA   NA
 2325196 2325197 CUP1639 CUP1640     FALSE 0.073 70.000 0.000 NA   NA
 2325197 2325198 CUP1640 CUP1641     FALSE 0.022 902.000 0.000 NA   NA
 2325198 2325199 CUP1641 CUP1642     TRUE 0.817 -3.000 0.000 1.000   NA
 2325199 2325200 CUP1642 CUP1643   rpsI FALSE 0.259 35.000 0.000 1.000   NA
 2325201 2325202 CUP1118 CUP1117   trpS TRUE 0.960 -3.000 0.033 0.095   NA
 2325202 2325203 CUP1117 CUP1116 trpS serS TRUE 0.574 48.000 0.010 0.042 Y NA
 2325203 2325204 CUP1116 CUP1115 serS   TRUE 0.935 9.000 0.014 1.000   NA
 2325205 2325206 CUP1114 CUP1113 recJ pyrG TRUE 0.907 -16.000 0.026 1.000 N NA
 2325207 2325208 CUP1112 CUP1111     FALSE 0.469 19.000 0.000 NA   NA
 2325208 2325209 CUP1111 CUP1110   gltP FALSE 0.128 85.000 0.009 1.000   NA
 2325210 2325211 CUP1109 CUP1108   maeB TRUE 0.925 9.000 0.010 NA   NA
 2325211 2325212 CUP1108 CUP1107 maeB gltX TRUE 0.936 -3.000 0.021 1.000 N NA
 2325214 2325215 CUP1105 CUP1104   pvdS TRUE 0.633 -25.000 0.000 1.000   NA
 2325216 2325217 CUP1103 CUP1102     TRUE 0.981 0.000 0.185 1.000   NA
 2325217 2325218 CUP1102 CUP1101     TRUE 0.964 11.000 0.160 1.000   NA
 2325219 2325220 CUP1100 CUP1099     TRUE 0.969 2.000 0.093 1.000 N NA
 2325220 2325221 CUP1099 CUP1098     TRUE 0.973 -10.000 0.133 1.000   NA
 2325221 2325222 CUP1098 CUP1097   fba FALSE 0.240 73.000 0.027 1.000   NA
 2325222 2325223 CUP1097 CUP1096 fba   TRUE 0.951 0.000 0.036 1.000 N NA
 2325224 2325225 CUP1095 CUP1094 nth   TRUE 0.921 -3.000 0.004 0.005 N NA
 2325225 2325226 CUP1094 CUP1093     TRUE 0.951 0.000 0.033 NA   NA
 2325226 2325227 CUP1093 CUP1092     TRUE 0.927 -3.000 0.017 NA   NA
 2325228 2325229 CUP1091 CUP1090     TRUE 0.979 10.000 0.200 NA   NA
 2325229 2325230 CUP1090 CUP1089     TRUE 0.989 -3.000 0.400 NA   NA
 2325230 2325231 CUP1089 CUP1088   htpG TRUE 0.897 -3.000 0.007 NA N NA
 2325231 2325232 CUP1088 CUP1087 htpG   FALSE 0.210 54.000 0.003 1.000 N NA
 2325232 2325233 CUP1087 CUP1086     TRUE 0.990 -25.000 0.846 NA   NA
 2325233 2325234 CUP1086 CUP1085   purQ TRUE 0.952 -3.000 0.038 NA   NA
 2325234 2325235 CUP1085 CUP1084 purQ purS TRUE 0.997 10.000 0.656 0.002 Y NA
 2325235 2325236 CUP1084 CUP1083 purS purC TRUE 0.995 10.000 0.460 1.000 Y NA
 2325236 2325237 CUP1083 CUP1082 purC prc TRUE 0.956 2.000 0.045 1.000 N NA
 2325238 2325239 CUP1081 CUP1080     FALSE 0.364 25.000 0.000 NA   NA
 2325239 2325240 CUP1080 CUP1079     FALSE 0.320 84.000 0.108 NA   NA
 2325240 2325241 CUP1079 CUP1078     FALSE 0.027 219.000 0.000 NA   NA
 2325243 2325244 CUP1076 CUP1075 accB   TRUE 0.988 1.000 0.071 0.003 Y NA
 2325244 2325245 CUP1075 CUP1074     FALSE 0.085 63.000 0.000 1.000 N NA
 2325246 2325247 CUP1073 CUP1072 gidB ribA TRUE 0.925 -3.000 0.017 1.000 N NA
 2325248 2325249 CUP1071 CUP1070 hemB argF TRUE 0.934 0.000 0.020 1.000 N NA
 2325249 2325250 CUP1070 CUP1069 argF   TRUE 0.945 -3.000 0.025 1.000   NA
 2325250 2325251 CUP1069 CUP1068   hemN TRUE 0.987 -13.000 0.419 1.000   NA
 2325251 2325252 CUP1068 CUP1067 hemN glpC TRUE 0.992 0.000 0.419 0.020 N NA
 2325252 2325253 CUP1067 CUP1066 glpC   TRUE 0.804 -3.000 0.000 1.000 N NA
 2325253 2325254 CUP1066 CUP1065     TRUE 0.994 -3.000 0.355 NA Y NA
 2325254 2325255 CUP1065 CUP1064     TRUE 0.973 -3.000 0.137 NA N NA
 2325255 2325256 CUP1064 CUP1063     TRUE 0.986 -3.000 0.103 1.000 Y NA
 2325256 2325257 CUP1063 CUP1062     TRUE 0.511 17.000 0.000 1.000   NA
 2325257 2325258 CUP1062 CUP1061     FALSE 0.045 170.000 0.000 0.012   NA
 2325258 2325259 CUP1061 CUP1060     TRUE 0.796 -10.000 0.000 NA   NA
 2325259 2325260 CUP1060 CUP1059     TRUE 0.837 -4.000 0.000 NA   NA
 2325260 2325261 CUP1059 CUP1058     FALSE 0.326 28.000 0.000 NA   NA
 2325262 2325263 CUP1057 CUP1056 prfA rpsT TRUE 0.978 1.000 0.029 1.000 Y NA
 2325263 2325264 CUP1056 CUP1055 rpsT pgpA FALSE 0.116 77.000 0.004 1.000 N NA
 2325264 2325265 CUP1055 CUP1054 pgpA   TRUE 0.958 2.000 0.052 1.000 N NA
 2325265 2325266 CUP1054 CUP1053     TRUE 0.812 -22.000 0.009 1.000 N NA
 2325266 2325267 CUP1053 CUP1052     TRUE 0.892 0.000 0.004 1.000 N NA
 2325269 2325270 CUP1050 CUP1049     FALSE 0.041 104.000 0.000 1.000 N NA
 2325270 2325271 CUP1049 CUP1048     TRUE 0.986 12.000 0.667 NA   NA
 2325272 2325273 CUP1047 CUP1046     TRUE 0.994 -15.000 0.412 0.024 Y NA
 2325273 2325274 CUP1046 CUP1045     TRUE 0.997 -3.000 0.647 0.024 Y NA
 2325274 2325275 CUP1045 CUP1044     TRUE 0.929 -3.000 0.000 1.000 Y NA
 2325275 2325276 CUP1044 CUP1043   nikE TRUE 0.998 -7.000 0.684 0.015 Y NA
 2325276 2325277 CUP1043 CUP1042 nikE nuoA FALSE 0.165 114.000 0.053 1.000 N NA
 2325277 2325278 CUP1042 CUP1041 nuoA   TRUE 0.995 -18.000 0.571 0.004 Y NA
 2325278 2325279 CUP1041 CUP1040   nuoC TRUE 0.998 0.000 0.703 0.004 Y NA
 2325279 2325280 CUP1040 CUP1039 nuoC nuoD TRUE 0.998 2.000 0.650 0.010 Y NA
 2325280 2325281 CUP1039 CUP1038 nuoD   TRUE 0.995 -3.000 0.650 0.010   NA
 2325281 2325282 CUP1038 CUP1037     TRUE 0.993 -3.000 0.464 0.010   NA
 2325282 2325283 CUP1037 CUP1036     TRUE 0.992 -3.000 0.444 0.010   NA
 2325283 2325284 CUP1036 CUP1035     TRUE 0.987 -7.000 0.065 0.010 Y NA
 2325284 2325285 CUP1035 CUP1034     TRUE 0.997 9.000 0.500 0.010 Y NA
 2325285 2325286 CUP1034 CUP1033   nuoJ TRUE 0.996 0.000 0.442 0.010 Y NA
 2325286 2325287 CUP1033 CUP1032 nuoJ nuoK TRUE 0.986 -3.000 0.064 0.004 Y NA
 2325287 2325288 CUP1032 CUP1031 nuoK nuoL TRUE 0.986 2.000 0.056 0.010 Y NA
 2325288 2325289 CUP1031 CUP1030 nuoL nuoM TRUE 0.986 1.000 0.056 0.002 Y NA
 2325289 2325290 CUP1030 CUP1029 nuoM   TRUE 0.983 -7.000 0.024 0.002 Y NA
 2325290 2325291 CUP1029 CUP1028     TRUE 0.739 21.000 0.020 1.000   NA
 2325293 2325294 CUP1026 CUP1025     TRUE 0.969 -9.000 0.100 NA   NA
 2325294 2325295 CUP1025 CUP1024     TRUE 0.992 -7.000 0.476 NA   NA
 2325295 2325296 CUP1024 CUP1023   moaA TRUE 0.954 0.000 0.042 NA   NA
 2325296 2325297 CUP1023 CUP1022 moaA   TRUE 0.948 1.000 0.028 1.000 N NA
 2325297 2325298 CUP1022 CUP1021     TRUE 0.974 -3.000 0.139 1.000 N NA
 2325298 2325299 CUP1021 CUP1020     TRUE 0.906 0.000 0.008 NA   NA
 2325299 2325300 CUP1020 CUP1019     TRUE 0.981 0.000 0.200 NA   NA
 2325300 2325301 CUP1019 CUP1018     TRUE 0.927 -19.000 0.070 NA   NA
 2325301 2325302 CUP1018 CUP1017   rpmE FALSE 0.196 79.000 0.023 NA   NA
 2325302 2325303 CUP1017 CUP1016 rpmE   TRUE 0.953 2.000 0.031 1.000   NA
 2325303 2325304 CUP1016 CUP1015     TRUE 0.953 1.000 0.031 1.000   NA
 2325304 2325305 CUP1015 CUP1014     TRUE 0.934 -13.000 0.033 NA   NA
 2325305 2325306 CUP1014 CUP1013     TRUE 0.996 2.000 0.882 NA   NA
 2325306 2325307 CUP1013 CUP1012   aspB-4 TRUE 0.973 3.000 0.098 NA   NA
 2325307 2325308 CUP1012 CUP1011 aspB-4   TRUE 0.992 3.000 0.202 1.000 Y NA
 2325309 2325310 CUPA0027 CUPA0028     TRUE 0.809 -3.000 0.000 NA   NA
 2325310 2325311 CUPA0028 CUPA0029     TRUE 0.798 10.000 0.000 NA   NA
 2325311 2325312 CUPA0029 CUPA0030     FALSE 0.175 45.000 0.000 NA   NA
 2325312 2325313 CUPA0030 CUPA0031     TRUE 0.826 -7.000 0.000 NA   NA
 2325313 2325314 CUPA0031 CUPA0032     FALSE 0.269 34.000 0.000 1.000   NA
 2325314 2325315 CUPA0032 CUPA0033     FALSE 0.153 48.000 0.000 NA   NA
 2325317 2325318 CUPA0035 CUPA0036     TRUE 0.809 -3.000 0.000 NA   NA
 2325318 2325319 CUPA0036 CUPA0037     FALSE 0.138 51.000 0.000 NA   NA
 2325319 2325320 CUPA0037 CUPA0038     TRUE 0.833 3.000 0.000 NA   NA
 2325320 2325321 CUPA0038 CUPA0039     TRUE 0.664 -21.000 0.000 NA   NA
 2325321 2325322 CUPA0039 CUPA0040     FALSE 0.023 441.000 0.000 NA   NA
 2325322 2325323 CUPA0040 CUPA0041     FALSE 0.043 103.000 0.000 NA   NA
 2325324 2325325 CUPA0042 CUPA0043     TRUE 0.995 -15.000 1.000 1.000   NA
 2325325 2325326 CUPA0043 CUPA0044     FALSE 0.026 264.000 0.000 1.000   NA
 2325326 2325327 CUPA0044 CUPA_CutmRNA2     FALSE 0.493 -196.000 0.000 NA   NA
 2325328 2325329 CUPA0046 CUPA0047     TRUE 0.693 51.000 0.250 NA   NA
 2325330 2325331 CUPA0048 CUPA0049     TRUE 0.994 -7.000 0.667 NA   NA
 2325331 2325332 CUPA0049 CUPA0050     TRUE 0.992 0.000 0.500 1.000   NA
 2325332 2325333 CUPA0050 CUPA0051     TRUE 0.796 -10.000 0.000 NA   NA
 2325333 2325334 CUPA0051 CUPA0052     TRUE 0.992 0.000 0.500 NA   NA
 2325336 2325337 CUPA0054 CUPA0055 rep   TRUE 0.809 -3.000 0.000 NA   NA
 2325337 2325338 CUPA0055 CUPA0056     TRUE 0.812 0.000 0.000 NA   NA
 2325338 2325339 CUPA0056 CUPA0057     TRUE 0.650 12.000 0.000 NA   NA
 11399751 2325340   CUPA0058     FALSE NA 863.000 0.000 NA   NA
 11542114 2325340   CUPA0058     FALSE NA 863.000 0.000 NA   NA
 11684506 2325340   CUPA0058     FALSE NA 863.000 0.000 NA   NA
 11399752 2325340   CUPA0058     FALSE NA 880.000 0.000 NA   NA
 11542115 2325340   CUPA0058     FALSE NA 880.000 0.000 NA   NA
 11684507 2325340   CUPA0058     FALSE NA 880.000 0.000 NA   NA
 11399753 2325340   CUPA0058     FALSE NA 905.000 0.000 NA   NA
 11542116 2325340   CUPA0058     FALSE NA 905.000 0.000 NA   NA
 11684508 2325340   CUPA0058     FALSE NA 905.000 0.000 NA   NA
 11399754 2325340   CUPA0058     FALSE NA 924.000 0.000 NA   NA
 11542117 2325340   CUPA0058     FALSE NA 924.000 0.000 NA   NA
 11684509 2325340   CUPA0058     FALSE NA 924.000 0.000 NA   NA
 11399755 2325340   CUPA0058     FALSE NA 949.000 0.000 NA   NA
 11542118 2325340   CUPA0058     FALSE NA 949.000 0.000 NA   NA
 11684510 2325340   CUPA0058     FALSE NA 949.000 0.000 NA   NA
 11399756 2325340   CUPA0058     FALSE NA 968.000 0.000 NA   NA
 11542119 2325340   CUPA0058     FALSE NA 968.000 0.000 NA   NA
 11684511 2325340   CUPA0058     FALSE NA 968.000 0.000 NA   NA
 11399757 2325340   CUPA0058     FALSE NA 999.000 0.000 NA   NA
 11542120 2325340   CUPA0058     FALSE NA 999.000 0.000 NA   NA
 11684512 2325340   CUPA0058     FALSE NA 999.000 0.000 NA   NA
 2325343 2325344 CUPA0061 CUPA0062     TRUE 0.835 -6.000 0.000 NA   NA
 2325344 2325345 CUPA0062 CUPA0063     TRUE 0.779 -12.000 0.000 NA   NA
 2325346 2325347 CUPA0064 CUPA0065     TRUE 0.577 -31.000 0.000 NA   NA
 2325347 2325348 CUPA0065 CUPA0066     TRUE 0.798 10.000 0.000 NA   NA
 2325348 2325349 CUPA0066 CUPA0067     TRUE 0.820 2.000 0.000 NA   NA
 2325349 2325350 CUPA0067 CUPA0068     TRUE 0.809 -3.000 0.000 NA   NA
 2325350 2325351 CUPA0068 CUPA0069     FALSE 0.026 240.000 0.000 NA   NA
 2325351 2325352 CUPA0069 CUPA0070     TRUE 0.840 3.000 0.000 1.000   NA
 2325352 2325353 CUPA0070 CUPA0071     FALSE 0.160 47.000 0.000 NA   NA
 2325353 2325354 CUPA0071 CUPA0072     FALSE 0.023 445.000 0.000 NA   NA
 2325354 2325355 CUPA0072 CUPA0073     TRUE 0.984 -3.000 0.182 0.011   NA
 2325355 2325356 CUPA0073 CUPA0074     TRUE 0.597 13.000 0.000 NA   NA
 2325357 2325358 CUPA0075 CUPA0076     TRUE 0.796 -10.000 0.000 NA   NA
 2325359 2325360 CUPA0077 CUPA0078     TRUE 0.812 0.000 0.000 NA   NA
 2325360 2325361 CUPA0078 CUPA0079     TRUE 0.833 3.000 0.000 NA   NA
 2325362 2325363 CUPA0080 CUPA0081     FALSE 0.035 123.000 0.000 NA   NA
 2325364 2325365 CUPA0082 CUPA0083   traL TRUE 0.971 0.000 0.111 NA   NA
 2325365 2325366 CUPA0083 CUPA0084 traL   TRUE 0.985 1.000 0.167 0.002   NA
 2325366 2325367 CUPA0084 CUPA0085     TRUE 0.998 -3.000 1.000 0.002   NA
 2325367 2325368 CUPA0085 CUPA0086     TRUE 0.997 -3.000 1.000 1.000   NA
 2325368 2325369 CUPA0086 CUPA0087     TRUE 0.992 4.000 0.429 1.000   NA
 2325369 2325370 CUPA0087 CUPA0088     TRUE 0.967 14.000 0.429 NA   NA
 2325370 2325371 CUPA0088 CUPA0089     TRUE 0.981 -31.000 0.667 NA   NA
 2325371 2325372 CUPA0089 CUPA0090     TRUE 0.809 -3.000 0.000 NA   NA
 2325372 2325373 CUPA0090 CUPA0091     TRUE 0.994 -3.000 0.667 NA   NA
 2325373 2325374 CUPA0091 CUPA0092     TRUE 0.809 -3.000 0.000 NA   NA
 2325374 2325375 CUPA0092 CUPA0093     TRUE 0.598 -28.000 0.000 NA   NA
 2325375 2325376 CUPA0093 CUPA0094     TRUE 0.987 -6.000 0.273 NA   NA
 2325376 2325377 CUPA0094 CUPA0095     TRUE 0.986 12.000 0.667 NA   NA
 2325377 2325378 CUPA0095 CUPA0097     FALSE 0.078 68.000 0.000 NA   NA
 2325378 2325379 CUPA0097 CUPA_CutmRNA3     FALSE 0.485 -1188.000 0.000 NA   NA
 2325379 2325380 CUPA_CutmRNA3 CUPA0098     FALSE 0.022 1076.000 0.000 NA   NA
 2325380 2325381 CUPA0098 CUPA0099   traG TRUE 0.560 14.000 0.000 NA   NA
 2325382 2325383 CUPA0100 CUPA0101     FALSE 0.023 371.000 0.000 NA   NA
 2325383 2325384 CUPA0101 CUPA0102     FALSE 0.026 237.000 0.000 NA   NA
 2325384 2325385 CUPA0102 CUPA0103     TRUE 0.986 12.000 0.667 NA   NA
 2325386 2325387 CUPA0104 CUPA0105     TRUE 0.812 0.000 0.000 NA   NA
 2325387 2325388 CUPA0105 CUPA0106     FALSE 0.026 221.000 0.000 NA   NA
 2325388 2325389 CUPA0106 CUPA0107     FALSE 0.023 442.000 0.000 NA   NA
 2325389 2325390 CUPA0107 CUPA0108     FALSE 0.071 72.000 0.000 NA   NA
 2325392 2325393 CUPA0110 CUPA0111     TRUE 0.976 9.000 0.115 NA   NA
 2325393 2325394 CUPA0111 CUPA0112     TRUE 0.972 -3.000 0.115 NA   NA
 2325394 2325395 CUPA0112 CUPA0113     TRUE 0.989 -3.000 0.400 NA   NA
 2325395 2325396 CUPA0113 CUPA0114     TRUE 0.993 0.000 0.600 NA   NA
 2325396 2325397 CUPA0114 CUPA0115     TRUE 0.716 11.000 0.000 NA   NA
 2325397 2325398 CUPA0115 CUPA0116     TRUE 0.826 -7.000 0.000 NA   NA
 2325398 2325399 CUPA0116 CUPA0117     TRUE 0.809 -3.000 0.000 NA   NA
 2325399 2325400 CUPA0117 CUPA0118     TRUE 0.996 -3.000 0.600 NA Y NA
 2325400 2325401 CUPA0118 CUPA0119     TRUE 0.998 -7.000 1.000 NA Y NA
 2325401 2325402 CUPA0119 CUPA0120     TRUE 0.809 -3.000 0.000 NA   NA
 2325402 2325403 CUPA0120 CUPA0121     TRUE 0.978 -3.000 0.167 NA   NA
 2325403 2325404 CUPA0121 CUPA0122     TRUE 0.978 0.000 0.167 NA   NA
 2325404 2325405 CUPA0122 CUPA0123     TRUE 0.973 9.000 0.095 NA   NA
 2325405 2325406 CUPA0123 CUPA0124   cagT TRUE 0.980 -3.000 0.190 NA   NA
 2325406 2325407 CUPA0124 CUPA0125 cagT   TRUE 0.798 10.000 0.000 NA   NA
 2325407 2325408 CUPA0125 CUPA0126     TRUE 0.812 0.000 0.000 NA   NA
 2325408 2325409 CUPA0126 CUPA0127     FALSE 0.035 121.000 0.000 NA   NA
 2325409 2325410 CUPA0127 CUPA0128   topB-1 FALSE 0.319 88.000 0.120 NA   NA
 2325410 2325411 CUPA0128 CUPA0129 topB-1   TRUE 0.812 0.000 0.000 NA   NA
 2325411 2325412 CUPA0129 CUPA0130     TRUE 0.760 -13.000 0.000 NA   NA
 2325412 2325413 CUPA0130 CUPA0131     FALSE 0.029 173.000 0.000 NA   NA
 2325413 2325414 CUPA0131 CUPA0132     TRUE 0.681 -19.000 0.000 NA   NA
 2325414 2325415 CUPA0132 CUPA0133     TRUE 0.590 -30.000 0.000 NA   NA
 2325415 2325416 CUPA0133 CUPA0134     FALSE 0.028 195.000 0.000 NA   NA
 2325416 2325417 CUPA0134 CUPA0135     TRUE 0.989 -3.000 0.400 NA   NA
 2325417 2325418 CUPA0135 CUPA0136     FALSE 0.035 129.000 0.000 1.000   NA
 2325418 2325419 CUPA0136 CUPA0137     FALSE 0.138 53.000 0.000 1.000   NA
 2325419 2325420 CUPA0137 CUPA0138     FALSE 0.026 317.000 0.000 1.000   NA
 2325420 2325421 CUPA0138 CUPA0139     FALSE 0.148 49.000 0.000 NA   NA
 2325421 2325422 CUPA0139 CUPA0140     FALSE 0.027 203.000 0.000 NA   NA
 2325422 2325423 CUPA0140 CUPA0141     TRUE 0.735 -15.000 0.000 NA   NA
 2325423 2325424 CUPA0141 CUPA0142     FALSE 0.181 44.000 0.000 NA   NA
 2325424 2325425 CUPA0142 CUPA0143     TRUE 0.994 -16.000 1.000 NA   NA
 2325426 2325427 CUPA0144 CUPA0146     TRUE 0.848 5.000 0.000 NA   NA
 2325427 2325428 CUPA0146 CUPA0145     FALSE 0.488 -388.000 0.000 NA   NA
 2325428 2325429 CUPA0145 CUPA0147     FALSE 0.022 1277.000 0.000 NA   NA
 2325430 2325431 CUPA0148 CUPA0149     FALSE 0.214 39.000 0.000 NA   NA
 2325432 2325433 CUP0211 CUP0210     TRUE 0.809 -3.000 0.000 NA   NA
 2325434 2325435 CUP0209 CUP0208   cvpA FALSE 0.137 70.000 0.003 1.000   NA
 2325435 2325436 CUP0208 CUP0207 cvpA   TRUE 0.946 1.000 0.023 1.000   NA
 2325436 2325437 CUP0207 CUP0206   lysS TRUE 0.940 1.000 0.022 1.000 N NA
 2325437 2325438 CUP0206 CUP0205 lysS glyA TRUE 0.952 -3.000 0.044 1.000 N NA
 2325438 2325439 CUP0205 CUP0204 glyA   TRUE 0.985 -3.000 0.271 NA   NA
 2325439 2325440 CUP0204 CUP0203     TRUE 0.974 12.000 0.387 NA   NA
 2325440 2325441 CUP0203 CUP0202     TRUE 0.934 -3.000 0.020 NA   NA
 2325442 2325443 CUP0201 CUP0200 murC   FALSE 0.062 96.000 0.000 0.089 N NA
 2325443 2325444 CUP0200 CUP0199     TRUE 0.992 -3.000 0.150 0.003 Y NA
 2325444 2325445 CUP0199 CUP0198     TRUE 0.836 34.000 0.060 0.054 Y NA
 2325445 2325446 CUP0198 CUP_tRNA-Ser-1     FALSE 0.039 110.000 0.000 NA   NA
 2325446 2325447 CUP_tRNA-Ser-1 CUP0196     FALSE 0.102 59.000 0.000 NA   NA
 2325447 2325448 CUP0196 CUP0195     FALSE 0.500 92.000 0.375 NA   NA
 2325448 2325449 CUP0195 CUP0194     TRUE 0.946 15.000 0.188 0.001 N NA
 2325450 2325451 CUP0193 CUP0192     FALSE 0.098 61.000 0.000 NA   NA
 2325451 2325452 CUP0192 CUP0191     TRUE 0.715 -16.000 0.000 NA   NA
 2325453 2325454 CUP0190 CUP0189     FALSE 0.024 320.000 0.000 NA   NA
 2325454 2325455 CUP0189 CUP0188     FALSE 0.092 62.000 0.000 NA   NA
 2325455 2325456 CUP0188 CUP0187     TRUE 0.760 -13.000 0.000 NA   NA
 2325456 2325457 CUP0187 CUP0186   dnaB FALSE 0.028 190.000 0.000 NA   NA
 2325457 2325458 CUP0186 CUP0185 dnaB   FALSE 0.053 89.000 0.000 NA   NA
 2325458 2325459 CUP0185 CUP0184     FALSE 0.041 106.000 0.000 NA   NA
 2325459 2325460 CUP0184 CUP0183     FALSE 0.249 35.000 0.000 NA   NA
 2325460 2325461 CUP0183 CUP0182   ispG FALSE 0.168 46.000 0.000 NA   NA
 2325461 2325462 CUP0182 CUP0181 ispG   FALSE 0.134 51.000 0.000 1.000 N NA
 2325463 2325464 CUP0180 CUP0179     TRUE 0.908 -3.000 0.009 NA   NA
 2325465 2325466 CUP0178 CUP0177 flhB   FALSE 0.042 104.000 0.000 NA   NA
 2325466 2325467 CUP0177 CUP0176     FALSE 0.025 248.000 0.000 NA   NA
 2325468 2325469 CUP0175 CUP0174     FALSE 0.110 106.000 0.015 1.000   NA
 2325469 2325470 CUP0174 CUP0173     TRUE 0.951 0.000 0.033 NA   NA
 2325470 2325471 CUP0173 CUP0172     TRUE 0.694 27.000 0.032 NA   NA
 2325471 2325472 CUP0172 CUP0171   plsX TRUE 0.992 6.000 0.418 1.000   NA
 2325472 2325473 CUP0171 CUP0170 plsX fabH TRUE 0.971 -19.000 0.058 0.005 Y NA
 2325474 2325475 CUP0169 CUP0168 serC xseA TRUE 0.778 13.000 0.010 1.000 N NA
 2325475 2325476 CUP0168 CUP0167 xseA ubiE TRUE 0.916 -10.000 0.016 1.000 N NA
 2325476 2325477 CUP0167 CUP0166 ubiE   TRUE 0.927 6.000 0.008 NA   NA
 2325477 2325478 CUP0166 CUP0165   furR1 FALSE 0.447 48.000 0.033 NA   NA
 2325478 2325479 CUP0165 CUP0164 furR1 dxs FALSE 0.157 82.000 0.017 1.000 N NA
 2325479 2325480 CUP0164 CUP0163 dxs fliH TRUE 0.960 -7.000 0.052 1.000 N NA
 2325480 2325481 CUP0163 CUP0162 fliH fliG TRUE 0.996 9.000 0.308 0.006 Y NA
 2325481 2325482 CUP0162 CUP0161 fliG fliF TRUE 0.997 0.000 0.477 0.009 Y NA
 2325482 2325483 CUP0161 CUP0160 fliF hisC FALSE 0.321 73.000 0.084 1.000 N NA
 2325484 2325485 CUP0159 CUP0158     TRUE 0.994 -9.000 0.667 NA   NA
 2325485 2325486 CUP0158 CUP0157     TRUE 0.987 -3.000 0.333 NA   NA
 2325487 2325488 CUP0156 CUP0155     TRUE 0.951 0.000 0.041 NA N NA
 2325490 2325491 CUP0153 CUP0152     TRUE 0.995 10.000 0.466 1.000 Y NA
 2325491 2325492 CUP0152 CUP0151   ftsH TRUE 0.952 -3.000 0.043 1.000 N NA
 2325492 2325493 CUP0151 CUP0150 ftsH   TRUE 0.975 -13.000 0.217 1.000 N NA
 2325493 2325494 CUP0150 CUP0149     TRUE 0.896 18.000 0.146 1.000 N NA
 2325494 2325495 CUP0149 CUP0148   pglG FALSE 0.266 82.000 0.062 1.000   NA
 2325495 2325496 CUP0148 CUP0147 pglG pglF TRUE 0.986 -6.000 0.242 1.000   NA
 2325496 2325497 CUP0147 CUP0146 pglF pglE TRUE 0.988 -3.000 0.133 1.000 Y NA
 2325497 2325498 CUP0146 CUP0145 pglE recG FALSE 0.176 44.000 0.000 1.000 N NA
 2325498 2325499 CUP0145 CUP0144 recG   TRUE 0.963 -10.000 0.084 1.000   NA
 2325499 2325500 CUP0144 CUP0143     TRUE 0.975 0.000 0.130 1.000   NA
 2325502 2325503 CUP0958 CUP0959     FALSE 0.481 18.000 0.000 NA   NA
 2325505 2325506 CUP0961 CUP0962     FALSE 0.032 134.000 0.000 NA   NA
 2325506 2325507 CUP0962 CUP0963     FALSE 0.092 62.000 0.000 NA   NA
 2325507 2325508 CUP0963 CUP0964     FALSE 0.034 125.000 0.000 NA   NA
 2325509 2325510 CUP0965 CUP0966     TRUE 0.809 -3.000 0.000 NA   NA
 2325510 2325511 CUP0966 CUP0967     TRUE 0.818 1.000 0.000 NA   NA
 2325511 2325512 CUP0967 CUP0968     TRUE 0.796 -10.000 0.000 NA   NA
 2325512 2325513 CUP0968 CUP0969     FALSE 0.031 150.000 0.000 NA   NA
 2325515 2325516 CUP0971 CUP0972     TRUE 0.809 -3.000 0.000 NA   NA
 2325518 2325519 CUP0974 CUP0975     TRUE 0.826 -7.000 0.000 NA   NA
 2325519 2325520 CUP0975 CUP0976     TRUE 0.812 0.000 0.000 NA   NA
 2325520 2325521 CUP0976 CUP0977     FALSE 0.026 225.000 0.000 NA   NA
 2325521 2325522 CUP0977 CUP0978     TRUE 0.809 -3.000 0.000 NA   NA
 2325522 2325523 CUP0978 CUP0979   coaD FALSE 0.060 81.000 0.000 NA   NA
 2325523 2325524 CUP0979 CUP0980 coaD tmk TRUE 0.950 -9.000 0.034 1.000 N NA
 2325524 2325525 CUP0980 CUP0981 tmk hisS TRUE 0.948 -7.000 0.018 0.087 N NA
 2325525 2325526 CUP0981 CUP0982 hisS speA TRUE 0.935 -3.000 0.021 1.000 N NA
 2325528 2325529 CUP0984 CUP0985 alaS   TRUE 0.923 0.000 0.015 1.000 N NA
 2325529 2325530 CUP0985 CUP0986     TRUE 0.943 -3.000 0.026 1.000 N NA
 2325534 2325535 CUP0990 CUP0991     FALSE 0.397 197.000 0.429 NA   NA
 2325535 2325536 CUP0991 CUP0992     TRUE 0.855 22.000 0.105 NA   NA
 2325536 2325537 CUP0992 CUP0993     TRUE 0.986 -169.000 1.000 NA   NA
 2325537 2325538 CUP0993 CUP0994     FALSE 0.064 77.000 0.000 NA   NA
 2325538 2325539 CUP0994 CUP0995     FALSE 0.030 167.000 0.000 NA   NA
 2325539 2325540 CUP0995 CUP0996     TRUE 0.809 -3.000 0.000 NA   NA
 2325541 2325542 CUP0997 CUP0998 aroC   TRUE 0.947 -3.000 0.030 1.000 N NA
 2325542 2325543 CUP0998 CUP0999   rnhA TRUE 0.895 -21.000 0.032 1.000 N NA
 2325543 2325544 CUP0999 CUP1000 rnhA   TRUE 0.715 -127.000 0.009 1.000   NA
 2325548 2325549 CUP1004 CUP1005     FALSE 0.054 88.000 0.000 NA   NA
 2325549 2325550 CUP1005 CUP1006     TRUE 0.798 10.000 0.000 NA   NA
 2325550 2325551 CUP1006 CUP1007     TRUE 0.997 0.000 0.564 0.052 Y NA
 2325551 2325552 CUP1007 CUP1008   trx FALSE 0.039 106.000 0.000 1.000 N NA
 2325552 2325553 CUP1008 CUP1009 trx   FALSE 0.356 55.000 0.027 1.000 N NA
 2325553 2325554 CUP1009 CUP1010     TRUE 0.943 0.000 0.023 1.000   NA
 2325555 2325556 CUP1467 CUP1468     TRUE 0.796 -10.000 0.000 NA   NA
 2325556 2325557 CUP1468 CUP1469     TRUE 0.875 1.000 0.000 0.018   NA
 2325557 2325558 CUP1469 CUP1470     TRUE 0.820 0.000 0.000 1.000   NA
 2325558 2325559 CUP1470 CUP1471     FALSE 0.168 46.000 0.000 NA   NA
 2325559 2325560 CUP1471 CUP1472   gltD FALSE 0.027 207.000 0.000 NA   NA
 2325561 2325562 CUP1473 CUP1474     TRUE 0.997 9.000 1.000 NA   NA
 2325563 2325564 CUP1475 CUP1476 gltB   FALSE 0.055 87.000 0.000 NA   NA
 2325564 2325565 CUP1476 CUP1477     TRUE 0.716 11.000 0.000 NA   NA
 2325565 2325566 CUP1477 CUP1478   topA TRUE 0.817 -3.000 0.000 1.000   NA
 2325569 2325570 CUP1481 CUP1482   bacA TRUE 0.517 -67.000 0.000 NA   NA
 2325570 2325571 CUP1482 CUP1483 bacA thrS FALSE 0.394 58.000 0.063 1.000 N NA
 2325571 2325572 CUP1483 CUP1484 thrS infC TRUE 0.981 -3.000 0.060 1.000 Y NA
 2325572 2325573 CUP1484 CUP1485 infC   FALSE 0.207 40.000 0.000 NA   NA
 2325573 2325574 CUP1485 CUP1486     FALSE 0.414 23.000 0.000 NA   NA
 2325577 2325578 CUP1489 CUP1490     TRUE 0.995 -19.000 0.625 0.007 Y NA
 2325578 2325579 CUP1490 CUP1491     TRUE 0.809 -3.000 0.000 NA   NA
 2325580 2325581 CUP1492 CUP1493 argC   TRUE 0.944 9.000 0.019 1.000   NA
 2325581 2325582 CUP1493 CUP1494   argB TRUE 0.919 9.000 0.006 1.000   NA
 2325582 2325583 CUP1494 CUP1495 argB argD TRUE 0.978 1.000 0.030 1.000 Y NA
 2325583 2325584 CUP1495 CUP1496 argD   FALSE 0.028 187.000 0.000 NA   NA
 2325586 2325587 CUP1498 CUP1499     TRUE 0.760 -13.000 0.000 NA   NA
 2325589 2325590 CUP0923 CUP0924     TRUE 0.836 9.000 0.000 NA   NA
 2325590 2325591 CUP0924 CUP0925     TRUE 0.716 11.000 0.000 NA   NA
 2325591 2325592 CUP0925 CUP0926     FALSE 0.023 428.000 0.000 NA   NA
 2325592 2325593 CUP0926 CUP0927     TRUE 0.809 -3.000 0.000 NA   NA
 2325593 2325594 CUP0927 CUP0928     TRUE 0.844 4.000 0.000 NA   NA
 2325594 2325595 CUP0928 CUP0929     FALSE 0.032 134.000 0.000 NA   NA
 2325595 2325596 CUP0929 CUP0930     TRUE 0.833 3.000 0.000 NA   NA
 2325596 2325597 CUP0930 CUP0931     FALSE 0.098 61.000 0.000 NA   NA
 2325597 2325598 CUP0931 CUP0932     FALSE 0.025 284.000 0.000 NA   NA
 2325598 2325599 CUP0932 CUP0933     FALSE 0.127 54.000 0.000 NA   NA
 2325599 2325600 CUP0933 CUP0934     FALSE 0.092 62.000 0.000 NA   NA
 2325600 2325601 CUP0934 CUP0935     FALSE 0.023 407.000 0.000 NA   NA
 2325601 2325602 CUP0935 CUP0936     TRUE 0.812 0.000 0.000 NA   NA
 2325602 2325603 CUP0936 CUP0937     FALSE 0.024 324.000 0.000 NA   NA
 2325603 2325604 CUP0937 CUP0938     FALSE 0.034 125.000 0.000 NA   NA
 2325604 2325605 CUP0938 CUP0939     FALSE 0.041 106.000 0.000 NA   NA
 2325605 2325606 CUP0939 CUP0940     FALSE 0.024 321.000 0.000 NA   NA
 2325606 2325607 CUP0940 CUP0941     FALSE 0.106 58.000 0.000 NA   NA
 2325607 2325608 CUP0941 CUP0942     TRUE 0.715 -16.000 0.000 NA   NA
 2325611 2325612 CUP0945 CUP0946     TRUE 0.914 -22.000 0.065 NA   NA
 2325612 2325613 CUP0946 CUP0947     FALSE 0.057 84.000 0.000 NA   NA
 2325613 2325614 CUP0947 CUP0948     TRUE 0.796 -10.000 0.000 NA   NA
 2325614 2325615 CUP0948 CUP0949     TRUE 0.818 1.000 0.000 NA   NA
 2325616 2325617 CUP0950 CUP0951     FALSE 0.200 41.000 0.000 NA   NA
 2325617 2325618 CUP0951 CUP0952     FALSE 0.057 84.000 0.000 NA   NA
 2325618 2325619 CUP0952 CUP0953     FALSE 0.076 69.000 0.000 NA   NA
 2325619 2325620 CUP0953 CUP0954     FALSE 0.026 323.000 0.000 1.000   NA
 2325621 2325622 CUP1442 CUP1443     FALSE 0.092 62.000 0.000 NA   NA
 2325622 2325623 CUP1443 CUP1444     TRUE 0.812 0.000 0.000 NA   NA
 2325624 2325625 CUP1445 CUP1446     TRUE 0.818 1.000 0.000 NA   NA
 2325626 2325627 CUP1447 CUP1448     FALSE 0.191 42.000 0.000 NA   NA
 2325627 2325628 CUP1448 CUP1449     FALSE 0.030 179.000 0.000 1.000   NA
 2325628 2325629 CUP1449 CUP1450     FALSE 0.026 239.000 0.000 NA   NA
 2325629 2325630 CUP1450 CUP1451     TRUE 0.836 9.000 0.000 NA   NA
 2325630 2325631 CUP1451 CUP1452     FALSE 0.029 172.000 0.000 NA   NA
 2325631 2325632 CUP1452 CUP1453     FALSE 0.044 172.000 0.000 0.022   NA
 2325632 2325633 CUP1453 CUP1454     TRUE 0.543 22.000 0.000 0.022   NA
 2325636 2325637 CUP1457 CUP1458     FALSE 0.033 131.000 0.000 NA   NA
 2325637 2325638 CUP1458 CUP1459   obg TRUE 0.716 11.000 0.000 NA   NA
 2325638 2325639 CUP1459 CUP1460 obg   TRUE 0.818 -9.000 0.000 1.000   NA
 2325639 2325640 CUP1460 CUP1461   gyrB FALSE 0.164 66.000 0.006 1.000   NA
 2325640 2325641 CUP1461 CUP1462 gyrB dnaN TRUE 0.985 10.000 0.114 1.000 Y NA
 2325641 2325642 CUP1462 CUP1463 dnaN   FALSE 0.382 24.000 0.000 NA   NA
 2325642 2325643 CUP1463 CUP1464   dnaA TRUE 0.650 12.000 0.000 NA   NA
 2325646 2325647 CUP0225 CUP0224     FALSE 0.024 328.000 0.000 NA   NA
 2325647 2325648 CUP0224 CUP0223     TRUE 0.983 -3.000 0.222 1.000   NA
 2325648 2325649 CUP0223 CUP0222     TRUE 0.996 -10.000 0.750 0.012   NA
 2325649 2325650 CUP0222 CUP0221   sdhB TRUE 0.599 31.000 0.022 1.000   NA
 2325650 2325651 CUP0221 CUP0220 sdhB   TRUE 0.993 -7.000 0.153 0.002 Y NA
 2325651 2325652 CUP0220 CUP0219     TRUE 0.984 -16.000 0.128 0.002 Y NA
 2325652 2325653 CUP0219 CUP0218   lgt FALSE 0.321 46.000 0.010 1.000 N NA
 2325655