MicrobesOnline Operon Predictions for Salmonella enterica Paratyphi A

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 902901 902902 SPA0001 SPA0002 thrL thrA FALSE 0.247 82.000 0.043 1.000   NA
 902902 902903 SPA0002 SPA0003 thrA thrB TRUE 0.990 2.000 0.133 1.000 Y NA
 902903 902904 SPA0003 SPA0004 thrB thrC TRUE 0.993 4.000 0.233 1.000 Y NA
 902905 10702252 SPA0005 SPA0006 yaaA   TRUE 0.848 -6.000 0.000 NA   NA
 902906 902907 SPA0007 SPA0008 talB mog FALSE 0.105 111.000 0.042 1.000 N NA
 902908 902909 SPA0009 SPA0010 yaaH htgA FALSE 0.122 150.000 0.000 NA   NA
 902909 902910 SPA0010 SPA0011 htgA yaaI FALSE 0.450 36.000 0.000 NA   NA
 902911 902912 SPA0012 SPA0013 dnaK dnaJ TRUE 0.933 86.000 0.236 0.004 Y NA
 902912 902913 SPA0013 SPA0014 dnaJ   FALSE 0.009 284.000 0.000 1.000 N NA
 902913 902914 SPA0014 SPA0015     TRUE 0.716 127.000 0.600 NA   NA
 902915 902916 SPA0016 SPA0017     TRUE 0.964 17.000 0.600 NA   NA
 10702253 902917 SPA0018 SPA0019     TRUE 0.487 32.000 0.000 NA   NA
 902917 902918 SPA0019 SPA0020     FALSE 0.016 281.000 0.000 NA   NA
 902918 902919 SPA0020 SPA0021   bcfA FALSE 0.003 430.000 0.000 NA N NA
 902919 902920 SPA0021 SPA0022 bcfA bcfB TRUE 0.907 101.000 0.500 1.000 Y NA
 902920 902921 SPA0022 SPA0023 bcfB radA TRUE 0.997 5.000 0.667 1.000 Y NA
 902921 902922 SPA0023 SPA0024 radA bcfD TRUE 0.997 1.000 0.500 NA Y NA
 902922 902923 SPA0024 SPA0025 bcfD bcfE TRUE 0.997 1.000 0.500 NA Y NA
 902923 10702254 SPA0025 SPA0026 bcfE   TRUE 0.714 16.000 0.000 NA   NA
 10702254 902924 SPA0026 SPA0027   bcfG TRUE 0.831 -7.000 0.000 NA   NA
 902924 902925 SPA0027 SPA0028 bcfG bcfH TRUE 0.720 65.000 0.167 0.018 N NA
 902925 902926 SPA0028 SPA0029 bcfH   FALSE 0.427 39.000 0.000 NA   NA
 902931 902932 SPA0034 SPA0035     FALSE 0.221 99.000 0.000 NA   NA
 10702255 902933 SPA0036 SPA0037     FALSE 0.219 102.000 0.000 NA   NA
 902933 902934 SPA0037 SPA0038     TRUE 0.594 25.000 0.000 1.000   NA
 902934 902935 SPA0038 SPA0039     FALSE 0.173 127.000 0.000 NA   NA
 902935 902936 SPA0039 SPA0040   nhaA FALSE 0.093 163.000 0.000 NA   NA
 902936 902937 SPA0040 SPA0041 nhaA nhaR TRUE 0.660 62.000 0.292 1.000 N NA
 902938 902939 SPA0042 SPA0043     TRUE 0.928 40.000 0.231 1.000 Y NA
 902939 902940 SPA0043 SPA0044   rpsT FALSE 0.003 456.000 0.000 1.000 N NA
 902941 902942 SPA0045 SPA0046 yaaY ribF TRUE 0.793 8.000 0.019 NA   NA
 902942 902943 SPA0046 SPA0047 ribF ileS TRUE 0.707 45.000 0.254 1.000 N NA
 902943 902944 SPA0047 SPA0048 ileS lspA TRUE 0.813 0.000 0.045 1.000 N NA
 902944 902945 SPA0048 SPA0049 lspA fkpB FALSE 0.209 155.000 0.154 1.000 N NA
 902945 902946 SPA0049 SPA0050 fkpB lytB TRUE 0.989 3.000 0.626 1.000 N NA
 902946 902947 SPA0050 SPA0051 lytB   FALSE 0.047 200.000 0.000 NA   NA
 902947 902948 SPA0051 SPA0052   yaaF TRUE 0.714 16.000 0.000 NA   NA
 902949 902950 SPA0053 SPA0054 citB   TRUE 0.998 2.000 1.000 1.000 Y NA
 902950 902951 SPA0054 SPA0055   oadB FALSE 0.136 135.000 0.068 1.000 N NA
 902951 902952 SPA0055 SPA0056 oadB oadA TRUE 0.998 13.000 0.886 0.002 Y NA
 902952 902953 SPA0056 SPA0057 oadA oadG TRUE 0.997 16.000 0.720 0.002 Y NA
 902953 902954 SPA0057 SPA0058 oadG   FALSE 0.446 159.000 0.060 1.000 Y NA
 902955 902956 SPA0059 SPA0060 citC citD TRUE 0.968 30.000 0.426 1.000 Y NA
 902956 902957 SPA0060 SPA0061 citD citE TRUE 0.995 -3.000 0.537 0.002 N NA
 902957 902958 SPA0061 SPA0062 citE citF TRUE 0.989 11.000 0.373 0.001 N NA
 902958 902959 SPA0062 SPA0063 citF   TRUE 0.970 0.000 0.231 1.000 N NA
 902959 902960 SPA0063 SPA0064   citG TRUE 0.988 -22.000 0.400 1.000 Y NA
 902960 902961 SPA0064 SPA0065 citG dapB FALSE 0.011 180.000 0.002 1.000 N NA
 902961 10702256 SPA0065 SPA0066 dapB   FALSE 0.108 155.000 0.000 NA   NA
 10702256 902962 SPA0066 SPA0067   carA FALSE 0.006 454.000 0.000 NA   NA
 902962 902963 SPA0067 SPA0068 carA carB TRUE 0.992 19.000 0.345 0.001 Y NA
 902963 902964 SPA0068 SPA0069 carB caiF FALSE 0.017 274.000 0.000 NA   NA
 902965 902966 SPA0070 SPA0071 caiE caiD FALSE 0.287 111.000 0.069 1.000   NA
 902966 902967 SPA0071 SPA0072 caiD caiC TRUE 0.883 54.000 0.000 0.029 Y NA
 902967 902968 SPA0072 SPA0073 caiC caiB TRUE 0.710 63.000 0.154 0.029 N NA
 902968 902969 SPA0073 SPA0074 caiB caiA TRUE 0.692 112.000 0.529 1.000 N NA
 902969 902970 SPA0074 SPA0075 caiA caiT FALSE 0.326 35.000 0.000 1.000 N NA
 902971 902972 SPA0076 SPA0077 fixA fixB TRUE 0.974 16.000 0.000 0.022 Y NA
 902972 902973 SPA0077 SPA0078 fixB fixC TRUE 0.881 50.000 0.000 0.062 Y NA
 902973 902974 SPA0078 SPA0079 fixC fixX TRUE 0.990 -3.000 0.000 0.062 Y NA
 902974 902975 SPA0079 SPA0080 fixX yaaU FALSE 0.077 148.000 0.000 1.000 N NA
 902975 902976 SPA0080 SPA0081 yaaU   FALSE 0.232 89.000 0.000 NA   NA
 902976 902977 SPA0081 SPA0082     FALSE 0.018 272.000 0.000 NA   NA
 902979 902980 SPA0084 SPA0085     FALSE 0.005 494.000 0.000 NA   NA
 902980 10702257 SPA0085 SPA0086     FALSE 0.005 554.000 0.000 NA   NA
 10702257 902981 SPA0086 SPA0087   kefC TRUE 0.831 -7.000 0.000 NA   NA
 902981 902982 SPA0087 SPA0088 kefC folA FALSE 0.010 199.000 0.012 1.000 N NA
 902983 902984 SPA0089 SPA0090 apaH apaG TRUE 0.949 11.000 0.267 NA N NA
 902984 902985 SPA0090 SPA0091 apaG ksgA TRUE 0.878 3.000 0.078 NA N NA
 902985 902986 SPA0091 SPA0092 ksgA pdxA TRUE 0.957 -3.000 0.197 1.000 N NA
 902986 902987 SPA0092 SPA0093 pdxA surA TRUE 0.988 0.000 0.561 1.000 N NA
 902987 902988 SPA0093 SPA0094 surA imp TRUE 0.573 54.000 0.182 1.000 N NA
 902990 902991 SPA0096 SPA0097 rluA hepA TRUE 0.949 12.000 0.294 1.000 N NA
 902991 902992 SPA0097 SPA0098 hepA polB TRUE 0.608 174.000 0.098 0.062 Y NA
 902992 902993 SPA0098 SPA0099 polB   FALSE 0.117 340.000 0.000 0.062 Y NA
 902997 902998 SPA0103 SPA0104 araD araA TRUE 0.484 141.000 0.017 1.000 Y NA
 902998 902999 SPA0104 SPA0105 araA araB TRUE 0.905 11.000 0.138 1.000 N NA
 903000 903001 SPA0106 SPA0107 araC yabI FALSE 0.422 119.000 0.167 NA   NA
 903002 903003 SPA0108 SPA0109 yabJ yabK TRUE 0.983 -16.000 0.522 0.018 N NA
 903003 903004 SPA0109 SPA0110 yabK tbpA TRUE 0.984 -24.000 0.697 0.081 N NA
 903004 903005 SPA0110 SPA0111 tbpA yabN FALSE 0.199 178.000 0.000 0.081   NA
 903005 903006 SPA0111 SPA0112 yabN leuD FALSE 0.005 551.000 0.000 1.000   NA
 903006 903007 SPA0112 SPA0113 leuD leuC TRUE 0.997 11.000 0.309 0.001 Y NA
 903007 903008 SPA0113 SPA0114 leuC leuB TRUE 0.998 3.000 0.275 0.002 Y NA
 903008 903009 SPA0114 SPA0115 leuB leuA TRUE 0.996 0.000 0.126 0.002 Y NA
 903009 903010 SPA0115 SPA0116 leuA leuL TRUE 0.567 88.000 0.010 0.002   NA
 903011 903012 SPA0117 SPA0118 leuO ilvI FALSE 0.006 322.000 0.000 1.000 N NA
 903012 903013 SPA0118 SPA0119 ilvI ilvH TRUE 0.998 0.000 0.371 0.002 Y NA
 903013 903014 SPA0119 SPA0120 ilvH fruR FALSE 0.012 284.000 0.063 1.000 N NA
 903014 903015 SPA0120 SPA0121 fruR yabB FALSE 0.004 606.000 0.000 NA   NA
 903015 903016 SPA0121 SPA0122 yabB yabC TRUE 0.991 2.000 0.635 NA   NA
 903016 903017 SPA0122 SPA0123 yabC ftsL TRUE 0.964 -3.000 0.227 1.000 N NA
 903017 903018 SPA0123 SPA0124 ftsL ftsI TRUE 0.815 16.000 0.124 1.000 N NA
 903018 903019 SPA0124 SPA0125 ftsI murE TRUE 0.963 -13.000 0.059 1.000 Y NA
 903019 903020 SPA0125 SPA0126 murE murF TRUE 0.999 -3.000 0.569 0.002 Y NA
 903020 903021 SPA0126 SPA0127 murF mraY TRUE 0.997 -6.000 0.309 0.004 Y NA
 903021 903022 SPA0127 SPA0128 mraY murD TRUE 0.999 3.000 0.647 0.004 Y NA
 903022 903023 SPA0128 SPA0129 murD ftsW TRUE 0.992 0.000 0.297 0.003 N NA
 903023 903024 SPA0129 SPA0130 ftsW murG TRUE 0.988 -3.000 0.647 1.000 N NA
 903024 903025 SPA0130 SPA0131 murG murC TRUE 0.829 119.000 0.283 1.000 Y NA
 903025 903026 SPA0131 SPA0132 murC ddlB TRUE 0.994 -7.000 0.153 0.004 Y NA
 903026 903027 SPA0132 SPA0133 ddlB ftsQ TRUE 0.995 2.000 0.372 NA Y NA
 903027 903028 SPA0133 SPA0134 ftsQ ftsA TRUE 0.978 -3.000 0.389 NA N NA
 903028 903029 SPA0134 SPA0135 ftsA ftsZ TRUE 0.933 61.000 0.460 1.000 Y NA
 903029 903030 SPA0135 SPA0136 ftsZ lpxC FALSE 0.350 101.000 0.134 1.000 N NA
 903030 903031 SPA0136 SPA0137 lpxC yacA FALSE 0.019 279.000 0.000 1.000   NA
 903031 903032 SPA0137 SPA0138 yacA secA FALSE 0.381 62.000 0.065 1.000   NA
 903032 903033 SPA0138 SPA0139 secA mutT FALSE 0.240 152.000 0.168 1.000 N NA
 903036 903037 SPA0142 SPA0143 yacG yacF TRUE 0.976 10.000 0.356 NA   NA
 903037 903038 SPA0143 SPA0144 yacF yacE TRUE 0.950 0.000 0.110 NA   NA
 903040 903041 SPA0146 SPA0147 hofC hofB TRUE 0.994 -10.000 0.571 1.000 Y NA
 903041 903042 SPA0147 SPA0148 hofB ppdD TRUE 0.995 10.000 0.556 1.000 Y NA
 903042 903043 SPA0148 SPA0149 ppdD nadC FALSE 0.007 222.000 0.015 1.000 N NA
 903044 903045 SPA0150 SPA0151 ampD ampE TRUE 0.993 -3.000 0.249 1.000 Y NA
 903046 903047 SPA0152 SPA0153     TRUE 0.984 0.000 0.333 1.000   NA
 903047 903048 SPA0153 SPA0154   aroP FALSE 0.269 164.000 0.238 1.000 N NA
 903049 903050 SPA0155 SPA0156 pdhR aceE FALSE 0.312 160.000 0.276 1.000 N NA
 903050 903051 SPA0156 SPA0157 aceE aceF TRUE 0.980 15.000 0.220 1.000 Y NA
 903051 903052 SPA0157 SPA0158 aceF lpdA TRUE 0.603 202.000 0.463 1.000 Y NA
 903052 903053 SPA0158 SPA0159 lpdA   FALSE 0.015 289.000 0.000 NA   NA
 903054 903055 SPA0160 SPA0161   yacH TRUE 0.780 13.000 0.000 NA   NA
 903056 903057 SPA0162 SPA0163 acnB yacL FALSE 0.079 188.000 0.068 NA   NA
 903057 903058 SPA0163 SPA0164 yacL kdgT FALSE 0.027 235.000 0.000 NA   NA
 903058 903059 SPA0164 SPA0165 kdgT ygbK TRUE 0.885 -3.000 0.000 NA   NA
 903059 903060 SPA0165 SPA0166 ygbK   TRUE 0.967 -10.000 0.361 NA   NA
 903060 903061 SPA0166 SPA0167     TRUE 0.980 10.000 0.533 1.000 N NA
 903062 903063 SPA0168 SPA0169 speD speE TRUE 0.955 21.000 0.162 1.000 Y NA
 903063 903064 SPA0169 SPA0170 speE yacC TRUE 0.660 107.000 0.354 NA   NA
 903069 903070 SPA0175 SPA0176 yadG yadH TRUE 0.997 -3.000 0.688 1.000 Y NA
 903070 903071 SPA0176 SPA0177 yadH yadI FALSE 0.095 105.000 0.037 1.000 N NA
 903071 903072 SPA0177 SPA0178 yadI yadE TRUE 0.869 68.000 0.222 1.000 Y NA
 903073 903074 SPA0179 SPA0180 stkG stkF TRUE 0.997 12.000 0.571 0.010 Y NA
 903074 903075 SPA0180 SPA0181 stkF stkE TRUE 0.981 19.000 0.571 0.010   NA
 903075 903076 SPA0181 SPA0182 stkE stkD TRUE 0.970 27.000 0.571 0.010   NA
 903076 903077 SPA0182 SPA0183 stkD stkC TRUE 0.971 35.000 0.571 1.000 Y NA
 903077 903078 SPA0183 SPA0184 stkC stkB TRUE 0.962 68.000 1.000 1.000 Y NA
 903078 903079 SPA0184 SPA0185 stkB stkA TRUE 0.942 87.000 0.750 1.000 Y NA
 903079 903080 SPA0185 SPA0186 stkA panD FALSE 0.010 277.000 0.000 1.000 N NA
 903080 903081 SPA0186 SPA0187 panD panC TRUE 0.877 95.000 0.342 1.000 Y NA
 903081 903082 SPA0187 SPA0188 panC panB TRUE 0.943 126.000 0.395 0.001 Y NA
 903082 903083 SPA0188 SPA0189 panB folK TRUE 0.707 121.000 0.117 1.000 Y NA
 903083 903084 SPA0189 SPA0190 folK pcnB TRUE 0.965 -3.000 0.234 1.000 N NA
 903084 903085 SPA0190 SPA0191 pcnB yadB TRUE 0.665 141.000 0.131 1.000 Y NA
 903085 903086 SPA0191 SPA0192 yadB dksA TRUE 0.574 69.000 0.231 1.000 N NA
 903086 903087 SPA0192 SPA0193 dksA sfsA FALSE 0.187 177.000 0.151 NA   NA
 903087 903088 SPA0193 SPA0194 sfsA ligT TRUE 0.664 17.000 0.045 NA   NA
 903089 903090 SPA0195 SPA0196 hrpB mrcB FALSE 0.276 141.000 0.158 1.000 N NA
 903090 10702258 SPA0196 SPA0197 mrcB   FALSE 0.014 293.000 0.000 NA   NA
 10702258 903091 SPA0197 SPA0198   fhuC FALSE 0.361 49.000 0.000 NA   NA
 903091 903092 SPA0198 SPA0199 fhuC fhuD TRUE 0.983 0.000 0.047 1.000 Y NA
 903092 903093 SPA0199 SPA0200 fhuD fhuB TRUE 0.986 -3.000 0.087 1.000 Y NA
 903093 903094 SPA0200 SPA0201 fhuB stfA FALSE 0.002 941.000 0.000 1.000 N NA
 903094 10702259 SPA0201 SPA0202 stfA   FALSE 0.240 86.000 0.000 NA   NA
 10702259 903095 SPA0202 SPA0203   stfD TRUE 0.671 18.000 0.000 NA   NA
 903095 903096 SPA0203 SPA0204 stfD stfE TRUE 0.978 19.000 0.333 1.000 Y NA
 903096 10702260 SPA0204 SPA0205 stfE   TRUE 0.885 -3.000 0.000 NA   NA
 10702260 903097 SPA0205 SPA0206   stfG TRUE 0.900 0.000 0.000 NA   NA
 903097 903098 SPA0206 SPA0207 stfG   TRUE 0.900 0.000 0.000 NA   NA
 903100 903101 SPA0209 SPA0210 yadQ yadR FALSE 0.361 37.000 0.031 NA   NA
 903102 903103 SPA0211 SPA0212 yadS btuF TRUE 0.763 37.000 0.213 NA   NA
 903103 903104 SPA0212 SPA0213 btuF mtn TRUE 0.822 -7.000 0.073 1.000 N NA
 903105 903106 SPA0214 SPA0215 dgt htrA FALSE 0.218 130.000 0.101 1.000 N NA
 903106 903107 SPA0215 SPA0216 htrA yaeG FALSE 0.104 153.000 0.080 NA N NA
 903110 903111 SPA0219 SPA0220 dapD glnD TRUE 0.577 30.000 0.097 1.000 N NA
 903111 903112 SPA0220 SPA0221 glnD map TRUE 0.486 113.000 0.243 1.000 N NA
 903113 903114 SPA0222 SPA0223   rpsB TRUE 0.512 29.000 0.000 NA   NA
 903114 903115 SPA0223 SPA0224 rpsB tsf TRUE 0.522 258.000 0.748 1.000 Y NA
 903115 903116 SPA0224 SPA0225 tsf pyrH TRUE 0.510 145.000 0.416 1.000 N NA
 903116 903117 SPA0225 SPA0226 pyrH frr TRUE 0.611 147.000 0.626 1.000 N NA
 903117 903118 SPA0226 SPA0227 frr dxr FALSE 0.053 142.000 0.032 1.000 N NA
 903118 903119 SPA0227 SPA0228 dxr uppS FALSE 0.065 313.000 0.025 1.000 Y NA
 903119 903120 SPA0228 SPA0229 uppS cdsA TRUE 0.990 13.000 0.400 1.000 Y NA
 903120 903121 SPA0229 SPA0230 cdsA yaeL TRUE 0.811 12.000 0.080 1.000 N NA
 903121 903122 SPA0230 SPA0231 yaeL yaeT TRUE 0.937 32.000 0.204 1.000 Y NA
 903122 903123 SPA0231 SPA0232 yaeT ompH TRUE 0.849 123.000 0.354 1.000 Y NA
 903123 903124 SPA0232 SPA0233 ompH lpxD TRUE 0.998 4.000 0.814 1.000 Y NA
 903124 903125 SPA0233 SPA0234 lpxD fabZ TRUE 0.791 106.000 0.796 1.000 N NA
 903125 903126 SPA0234 SPA0235 fabZ lpxA TRUE 0.991 4.000 0.850 1.000 N NA
 903126 903127 SPA0235 SPA0236 lpxA lpxB TRUE 0.995 0.000 0.289 1.000 Y NA
 903127 903128 SPA0236 SPA0237 lpxB rnhB TRUE 0.955 -3.000 0.186 1.000 N NA
 903128 903129 SPA0237 SPA0238 rnhB dnaE TRUE 0.931 24.000 0.104 1.000 Y NA
 903129 903130 SPA0238 SPA0239 dnaE accA TRUE 0.860 13.000 0.122 1.000 N NA
 903130 903131 SPA0239 SPA0240 accA   FALSE 0.045 179.000 0.003 1.000   NA
 903131 903132 SPA0240 SPA0241   ldcC FALSE 0.463 76.000 0.118 1.000   NA
 903132 903133 SPA0241 SPA0242 ldcC yaeR TRUE 0.739 56.000 0.039 NA Y NA
 903133 903134 SPA0242 SPA0243 yaeR mesJ FALSE 0.043 63.000 0.015 NA N NA
 903135 903136 SPA0244 SPA0245 rof yaeP TRUE 0.943 -7.000 0.179 NA   NA
 903137 903138 SPA0246 SPA0247 yaeQ yaeJ TRUE 0.870 -3.000 0.034 1.000   NA
 903138 903139 SPA0247 SPA0248 yaeJ cutF FALSE 0.390 32.000 0.027 NA   NA
 903140 903141 SPA0249 SPA0250 proS yaeB FALSE 0.201 111.000 0.048 NA   NA
 903141 903142 SPA0250 SPA0251 yaeB rcsF TRUE 0.973 -3.000 0.247 NA   NA
 903142 903143 SPA0251 SPA0252 rcsF yaeC TRUE 0.698 119.000 0.500 NA   NA
 903143 903144 SPA0252 SPA0253 yaeC yaeE TRUE 0.975 39.000 0.411 0.066 Y NA
 903144 903145 SPA0253 SPA0254 yaeE abc TRUE 0.996 8.000 0.584 1.000 Y NA
 903146 903147 SPA0255 SPA0256 yaeD rrsH FALSE 0.008 372.000 0.000 NA   NA
 903147 903148 SPA0256 SPA0257 rrsH ileV FALSE 0.290 65.000 0.000 NA   NA
 903148 903149 SPA0257 SPA0258 ileV alaV FALSE 0.203 113.000 0.000 NA   NA
 903149 903150 SPA0258 SPA0259 alaV rrlH FALSE 0.061 187.000 0.000 NA   NA
 903150 903151 SPA0259 SPA0261 rrlH rrfH FALSE 0.224 95.000 0.000 NA   NA
 903151 903152 SPA0261 SPA0262 rrfH   FALSE 0.006 421.000 0.000 NA   NA
 903152 903153 SPA0262 SPA0263   kgtP FALSE 0.218 104.000 0.051 NA   NA
 903154 903155 SPA0264 SPA0265 yfiM pssA TRUE 0.524 45.000 0.089 NA   NA
 903155 903156 SPA0265 SPA0266 pssA yfiQ TRUE 0.520 115.000 0.121 0.062 N NA
 903156 903157 SPA0266 SPA0267 yfiQ yfiP TRUE 0.688 54.000 0.222 NA   NA
 903157 903158 SPA0267 SPA0268 yfiP yfiG FALSE 0.371 73.000 0.084 NA   NA
 10702261 903159 SPA0269 SPA0270   yfiF TRUE 0.649 19.000 0.000 NA   NA
 903167 903168 SPA0278 SPA0279 rpoE rseA TRUE 0.916 32.000 0.705 NA N NA
 903168 903169 SPA0279 SPA0280 rseA rseB TRUE 0.998 0.000 0.856 NA Y NA
 903169 903170 SPA0280 SPA0281 rseB rseC TRUE 0.997 -3.000 0.609 NA Y NA
 903170 903171 SPA0281 SPA0282 rseC lepA FALSE 0.009 252.000 0.045 NA N NA
 903171 903172 SPA0282 SPA0283 lepA lepB TRUE 0.896 17.000 0.187 1.000   NA
 903172 903173 SPA0283 SPA0284 lepB rnc FALSE 0.042 274.000 0.117 1.000   NA
 903173 903174 SPA0284 SPA0285 rnc era TRUE 0.979 -3.000 0.127 0.060   NA
 903174 903175 SPA0285 SPA0286 era recO TRUE 0.906 12.000 0.109 1.000   NA
 903175 903176 SPA0286 SPA0287 recO pdxJ TRUE 0.906 12.000 0.166 1.000 N NA
 903176 903177 SPA0287 SPA0288 pdxJ acpS TRUE 0.979 0.000 0.326 1.000 N NA
 903178 903179 SPA0289 SPA0290 yfhL   FALSE 0.468 38.000 0.000 1.000   NA
 903180 903181 SPA0291 SPA0292     FALSE 0.463 22.000 0.000 1.000 N NA
 903183 903184 SPA0294 SPA0295     TRUE 0.929 11.000 0.125 1.000   NA
 903184 10702262 SPA0295 SPA0296     TRUE 0.885 4.000 0.000 NA   NA
 10702262 903185 SPA0296 SPA0297   yfhC TRUE 0.561 25.000 0.000 NA   NA
 903186 903187 SPA0298 SPA0299 yfhD   TRUE 0.829 1.000 0.013 NA   NA
 903188 903189 SPA0300 SPA0301 purL   FALSE 0.007 407.000 0.000 NA   NA
 903189 903190 SPA0301 SPA0302   yfhK FALSE 0.149 140.000 0.000 NA   NA
 903190 903191 SPA0302 SPA0303 yfhK yfhG TRUE 0.895 2.000 0.000 NA   NA
 903191 903192 SPA0303 SPA0304 yfhG yfhA TRUE 0.885 -3.000 0.000 NA   NA
 903192 903193 SPA0304 SPA0305 yfhA glnB FALSE 0.414 77.000 0.146 1.000 N NA
 903194 903195 SPA0306 SPA0307 yjdL cadA TRUE 0.932 56.000 0.400 1.000 Y NA
 903195 903196 SPA0307 SPA0308 cadA cadB TRUE 0.689 83.000 0.000 1.000 Y NA
 903196 10702263 SPA0308 SPA0309 cadB   FALSE 0.008 361.000 0.000 NA   NA
 10702263 903197 SPA0309 SPA0310   hmpA FALSE 0.067 182.000 0.000 NA   NA
 903198 903199 SPA0311 SPA0312 glyA hcaT FALSE 0.053 196.000 0.044 1.000   NA
 903201 903202 SPA0314 SPA0315     TRUE 0.925 -9.000 0.150 NA   NA
 903203 903204 SPA0316 SPA0317 asrC asrB TRUE 0.998 11.000 0.636 0.035 Y NA
 903204 903205 SPA0317 SPA0318 asrB asrA TRUE 0.991 4.000 0.318 0.035   NA
 903205 903206 SPA0318 SPA0319 asrA   FALSE 0.076 182.000 0.000 1.000   NA
 903206 903207 SPA0319 SPA0320   suhB FALSE 0.089 145.000 0.003 1.000   NA
 903208 903209 SPA0321 SPA0322   yfhP FALSE 0.124 178.000 0.126 1.000 N NA
 903209 903210 SPA0322 SPA0323 yfhP nifS FALSE 0.334 181.000 0.424 1.000 N NA
 903210 903211 SPA0323 SPA0324 nifS nifU TRUE 0.888 28.000 0.448 1.000 N NA
 903211 903212 SPA0324 SPA0325 nifU yfhF TRUE 0.958 29.000 0.359 0.002   NA
 903212 903213 SPA0325 SPA0326 yfhF yfhE FALSE 0.357 197.000 0.500 1.000   NA
 903213 903214 SPA0326 SPA0327 yfhE hscA TRUE 0.994 13.000 0.634 1.000 Y NA
 903214 903215 SPA0327 SPA0328 hscA fdx TRUE 0.991 2.000 0.794 1.000 N NA
 903215 903216 SPA0328 SPA0329 fdx yfhJ TRUE 0.982 12.000 0.625 1.000   NA
 903216 903217 SPA0329 SPA0330 yfhJ yfhI TRUE 0.642 54.000 0.171 1.000   NA
 903217 903218 SPA0330 SPA0331 yfhI sseB TRUE 0.581 101.000 0.253 NA   NA
 903219 903220 SPA0332 SPA0333     FALSE 0.018 271.000 0.000 NA   NA
 903220 903221 SPA0333 SPA0334   sseA FALSE 0.024 246.000 0.000 NA   NA
 903222 903223 SPA0335 SPA0336   pbpC TRUE 0.993 1.000 0.711 1.000   NA
 903223 10702264 SPA0336 SPA0337 pbpC   FALSE 0.167 130.000 0.000 NA   NA
 10702264 903224 SPA0337 SPA0338     TRUE 0.885 -3.000 0.000 NA   NA
 903224 903225 SPA0338 SPA0339     TRUE 0.986 -7.000 0.667 1.000   NA
 903225 903226 SPA0339 SPA0340     TRUE 0.966 0.000 0.154 1.000   NA
 903226 903227 SPA0340 SPA0341   ndk FALSE 0.032 121.000 0.002 1.000 N NA
 903227 903228 SPA0341 SPA0342 ndk yfgB FALSE 0.123 207.000 0.156 1.000   NA
 903228 903229 SPA0342 SPA0343 yfgB yfgA FALSE 0.011 292.000 0.020 1.000   NA
 903229 903230 SPA0343 SPA0344 yfgA gcpE TRUE 0.849 27.000 0.233 1.000   NA
 903230 903231 SPA0344 SPA0345 gcpE hisS FALSE 0.446 111.000 0.207 1.000 N NA
 903231 903232 SPA0345 SPA0346 hisS yfgM TRUE 0.944 14.000 0.259 1.000   NA
 903232 903233 SPA0346 SPA0347 yfgM yfgL TRUE 0.980 11.000 0.492 1.000   NA
 903233 903234 SPA0347 SPA0348 yfgL engA TRUE 0.501 117.000 0.203 1.000   NA
 903234 903235 SPA0348 SPA0349 engA yfgJ FALSE 0.138 89.000 0.009 NA   NA
 903235 10702265 SPA0349 SPA0350 yfgJ   FALSE 0.009 346.000 0.000 NA   NA
 10702265 903236 SPA0350 SPA0351   sinI FALSE 0.318 58.000 0.000 NA   NA
 903236 903237 SPA0351 SPA0352 sinI ratA TRUE 0.527 120.000 0.250 NA   NA
 903237 10702266 SPA0352 SPA0353 ratA   FALSE 0.271 70.000 0.000 NA   NA
 903239 903240 SPA0356 SPA0357 guaB guaA TRUE 0.942 70.000 0.190 0.001 Y NA
 903240 903241 SPA0357 SPA0358 guaA   FALSE 0.234 88.000 0.000 NA   NA
 10702267 903242 SPA0359 SPA0360     FALSE 0.030 229.000 0.000 NA   NA
 903242 903243 SPA0360 SPA0361     TRUE 0.929 16.000 0.273 NA   NA
 903244 903245 SPA0362 SPA0363     FALSE 0.267 71.000 0.000 NA   NA
 903245 903246 SPA0363 SPA0364     FALSE 0.222 97.000 0.000 NA   NA
 903247 903248 SPA0365 SPA0366 ppx ppk TRUE 0.996 5.000 0.486 NA Y NA
 903248 903249 SPA0366 SPA0367 ppk purN FALSE 0.013 189.000 0.017 1.000 N NA
 903249 903250 SPA0367 SPA0368 purN purM TRUE 0.998 0.000 0.230 0.002 Y NA
 903251 903252 SPA0369 SPA0370 upp uraA TRUE 0.751 88.000 0.101 1.000 Y NA
 903252 903253 SPA0370 SPA0371 uraA yfgE FALSE 0.158 71.000 0.048 1.000 N NA
 903254 903255 SPA0372 SPA0373 yfgD   TRUE 0.795 40.000 0.259 1.000   NA
 10702268 903256 SPA0374 SPA0375     FALSE 0.010 340.000 0.000 NA   NA
 903256 903257 SPA0375 SPA0376     TRUE 0.615 68.000 0.290 NA N NA
 903257 903258 SPA0376 SPA0377     TRUE 0.993 6.000 0.295 1.000 Y NA
 903259 903260 SPA0378 SPA0379 bcp gcvR TRUE 0.927 0.000 0.102 1.000 N NA
 903261 903262 SPA0380 SPA0381 dapA nlpB TRUE 0.978 17.000 0.267 1.000 Y NA
 903262 903263 SPA0381 SPA0382 nlpB purC FALSE 0.019 175.000 0.019 1.000 N NA
 903263 903264 SPA0382 SPA0383 purC   FALSE 0.111 131.000 0.006 1.000   NA
 903264 903265 SPA0383 SPA0384   ypfI TRUE 0.671 16.000 0.029 1.000   NA
 903266 903267 SPA0385 SPA0386   dapE FALSE 0.415 28.000 0.025 NA   NA
 903267 903268 SPA0386 SPA0387 dapE yffB TRUE 0.972 4.000 0.292 1.000 N NA
 903268 903269 SPA0387 SPA0388 yffB acrD FALSE 0.003 574.000 0.000 1.000 N NA
 903269 10702269 SPA0388 SPA0389 acrD   FALSE 0.065 185.000 0.000 NA   NA
 903272 903273 SPA0392 SPA0393 yffH ypfG TRUE 0.583 125.000 0.333 NA   NA
 903273 903274 SPA0393 SPA0394 ypfG   FALSE 0.171 128.000 0.000 NA   NA
 903275 903276 SPA0395 SPA0396 tktB talA TRUE 0.989 20.000 0.739 1.000 Y NA
 903277 903278 SPA0397 SPA0398 maeB eutS FALSE 0.006 418.000 0.070 1.000 N NA
 903278 903279 SPA0398 SPA0399 eutS eutP TRUE 0.950 13.000 0.009 1.000 Y NA
 903279 903280 SPA0399 SPA0400 eutP eutQ TRUE 0.935 -22.000 0.009 NA Y NA
 903280 903281 SPA0400 SPA0401 eutQ eutT TRUE 0.992 -3.000 0.214 NA Y NA
 903281 903282 SPA0401 SPA0402 eutT eutD TRUE 0.799 -3.000 0.048 1.000 N NA
 903282 903283 SPA0402 SPA0403 eutD eutN TRUE 0.905 41.000 0.182 NA Y NA
 903283 903284 SPA0403 SPA0404 eutN eutM TRUE 0.877 53.000 0.182 NA Y NA
 903284 903285 SPA0404 SPA0405 eutM eutE TRUE 0.964 12.000 0.000 NA Y NA
 903285 903286 SPA0405 SPA0406 eutE eutJ TRUE 0.736 11.000 0.000 1.000 N NA
 903286 903287 SPA0406 SPA0407 eutJ eutG TRUE 0.699 -10.000 0.000 1.000 N NA
 903287 903288 SPA0407 SPA0408 eutG eutH FALSE 0.436 120.000 0.222 1.000 N NA
 903288 903289 SPA0408 SPA0409 eutH eutA TRUE 0.980 -3.000 0.000 NA Y NA
 903289 903290 SPA0409 SPA0410 eutA eutB TRUE 0.964 12.000 0.000 NA Y NA
 903290 903291 SPA0410 SPA0411 eutB eutC TRUE 0.975 19.000 0.000 0.001 Y NA
 903291 903292 SPA0411 SPA0412 eutC eutL TRUE 0.973 10.000 0.043 1.000 Y NA
 903292 903293 SPA0412 SPA0413 eutL eutK TRUE 0.617 13.000 0.000 NA N NA
 903293 903294 SPA0413 SPA0414 eutK yfeG FALSE 0.208 48.000 0.000 NA N NA
 903295 903296 SPA0415 SPA0416 hemF amiA TRUE 0.691 3.000 0.025 1.000 N NA
 903297 903298 SPA0417 SPA0418   yfeZ TRUE 0.808 -13.000 0.059 NA   NA
 903298 903299 SPA0418 SPA0419 yfeZ   TRUE 0.624 62.000 0.204 NA   NA
 903299 903300 SPA0419 SPA0420     TRUE 0.653 95.000 0.333 NA   NA
 903300 903301 SPA0420 SPA0421   yfeF FALSE 0.012 238.000 0.000 NA N NA
 903301 903302 SPA0421 SPA0422 yfeF cysP FALSE 0.060 158.000 0.000 1.000 N NA
 903302 903303 SPA0422 SPA0423 cysP cysU TRUE 0.995 0.000 0.479 0.002 N NA
 903303 903304 SPA0423 SPA0424 cysU cysW TRUE 0.996 0.000 0.583 0.001 N NA
 903304 903305 SPA0424 SPA0425 cysW cysA TRUE 0.983 -10.000 0.180 1.000 Y NA
 903305 903306 SPA0425 SPA0426 cysA cysM FALSE 0.107 121.000 0.049 1.000 N NA
 903307 903308 SPA0427 SPA0428 yfeK yfeJ FALSE 0.312 59.000 0.000 NA   NA
 903308 903309 SPA0428 SPA0429 yfeJ ptsJ TRUE 0.666 15.000 0.059 1.000 N NA
 903310 903311 SPA0430 SPA0431 pdxK   TRUE 0.959 -3.000 0.160 NA   NA
 903312 903313 SPA0432 SPA0433 crr ptsI TRUE 0.960 41.000 0.203 0.011 Y NA
 903313 903314 SPA0433 SPA0434 ptsI ptsH TRUE 0.949 49.000 0.187 0.011 Y NA
 903314 903315 SPA0434 SPA0435 ptsH cysK FALSE 0.002 384.000 0.019 1.000 N NA
 903315 903316 SPA0435 SPA0436 cysK cysZ FALSE 0.120 312.000 0.122 1.000 Y NA
 903317 903318 SPA0437 SPA0438 zipA ligA FALSE 0.345 72.000 0.106 1.000 N NA
 903318 903319 SPA0438 SPA0439 ligA ypeB TRUE 0.742 -7.000 0.017 NA   NA
 903322 903323 SPA0442 SPA0443 lysV valY TRUE 0.866 8.000 0.000 NA   NA
 903323 903324 SPA0443 SPA0444 valY valX FALSE 0.383 45.000 0.000 NA   NA
 903324 903325 SPA0444 SPA0445 valX valU FALSE 0.361 49.000 0.000 NA   NA
 903327 903328 SPA0447 SPA0448 yfeD yfeC TRUE 0.992 2.000 0.250 0.006   NA
 903329 903330 SPA0449 SPA0450 alaX yfeA FALSE 0.053 194.000 0.000 NA   NA
 903332 903333 SPA0453 SPA0454 ypeC   TRUE 0.509 114.000 0.214 NA   NA
 903336 903337 SPA0457 SPA0458 glk yfdZ FALSE 0.002 723.000 0.000 1.000 N NA
 903341 10702271 SPA0462 SPA0463 pgtC   TRUE 0.885 -3.000 0.000 NA   NA
 10702271 903342 SPA0463 SPA0464   pgtA TRUE 0.803 -10.000 0.000 NA   NA
 903342 903343 SPA0464 SPA0465 pgtA pgtE FALSE 0.011 268.000 0.000 1.000 N NA
 903343 10702272 SPA0465 SPA0466 pgtE   FALSE 0.004 864.000 0.000 NA   NA
 903344 903345 SPA0467 SPA0468   gtrB2 TRUE 0.690 17.000 0.000 NA   NA
 903345 903346 SPA0468 SPA0469 gtrB2 gtrA TRUE 0.727 -31.000 0.000 NA   NA
 903346 903347 SPA0469 SPA0470 gtrA   FALSE 0.003 1096.000 0.000 NA   NA
 903347 903348 SPA0470 SPA0471   yfdC FALSE 0.257 76.000 0.000 NA   NA
 903351 903352 SPA0474 SPA0475 yfcZ yfcY FALSE 0.089 177.000 0.061 NA   NA
 903352 903353 SPA0475 SPA0476 yfcY yfcX TRUE 0.996 0.000 0.430 1.000 Y NA
 903353 903354 SPA0476 SPA0477 yfcX sixA FALSE 0.023 209.000 0.000 1.000 N NA
 903356 903357 SPA0479 SPA0480 yfcB aroC FALSE 0.465 36.000 0.081 1.000 N NA
 903357 903358 SPA0480 SPA0481 aroC mepA TRUE 0.677 4.000 0.025 1.000 N NA
 903358 903359 SPA0481 SPA0482 mepA yfcA TRUE 0.967 0.000 0.160 1.000   NA
 903359 903360 SPA0482 SPA0483 yfcA yfcM TRUE 0.963 0.000 0.153 NA   NA
 903360 903361 SPA0483 SPA0484 yfcM yfcL TRUE 0.884 33.000 0.425 NA   NA
 903363 903364 SPA0486 SPA0487 fabB   FALSE 0.221 98.000 0.000 NA   NA
 903365 903366 SPA0488 SPA0489     TRUE 0.900 0.000 0.000 NA   NA
 903366 903367 SPA0489 SPA0490     FALSE 0.083 169.000 0.000 NA   NA
 903368 903369 SPA0491 SPA0492     FALSE 0.079 180.000 0.000 1.000   NA
 903371 903372 SPA0494 SPA0495 pdxB usg TRUE 0.895 68.000 0.097 0.011 Y NA
 903372 903373 SPA0495 SPA0496 usg truA TRUE 0.789 0.000 0.040 1.000 N NA
 903373 903374 SPA0496 SPA0497 truA dedA FALSE 0.308 49.000 0.038 NA   NA
 903374 903375 SPA0497 SPA0498 dedA accD FALSE 0.079 150.000 0.020 NA   NA
 903375 903376 SPA0498 SPA0499 accD folC TRUE 0.705 68.000 0.383 1.000 N NA
 903376 903377 SPA0499 SPA0500 folC dedD TRUE 0.944 -10.000 0.216 NA   NA
 903377 903378 SPA0500 SPA0501 dedD cvpA FALSE 0.027 311.000 0.116 NA   NA
 903378 903379 SPA0501 SPA0502 cvpA purF TRUE 0.806 38.000 0.262 1.000   NA
 903381 903382 SPA0504 SPA0505     TRUE 0.739 91.000 0.095 1.000 Y NA
 903382 903383 SPA0505 SPA0506     TRUE 0.997 2.000 0.500 1.000 Y NA
 903383 903384 SPA0506 SPA0507     TRUE 0.935 64.000 0.500 1.000 Y NA
 903384 903385 SPA0507 SPA0508   ubiX FALSE 0.397 27.000 0.000 1.000 N NA
 903385 903386 SPA0508 SPA0509 ubiX argT FALSE 0.009 289.000 0.000 1.000 N NA
 903386 903387 SPA0509 SPA0510 argT hisJ FALSE 0.286 238.000 0.000 0.017 Y NA
 903387 903388 SPA0510 SPA0511 hisJ hisQ TRUE 0.880 183.000 0.833 0.064 Y NA
 903388 903389 SPA0511 SPA0512 hisQ hisM TRUE 0.999 -3.000 0.900 0.018 Y NA
 903389 903390 SPA0512 SPA0513 hisM hisP TRUE 0.993 14.000 0.643 1.000 Y NA
 903391 903392 SPA0514 SPA0515 yfcH yfcG FALSE 0.175 126.000 0.000 NA   NA
 903393 903394 SPA0516 SPA0517 yfcF yfcE TRUE 0.472 56.000 0.092 NA   NA
 903394 903395 SPA0517 SPA0518 yfcE   TRUE 0.789 57.000 0.143 0.013   NA
 903397 903398 SPA0520 SPA0521     TRUE 0.888 81.000 0.117 0.011 Y NA
 903398 903399 SPA0521 SPA0522   ulaA TRUE 0.919 15.000 0.052 0.016   NA
 903399 903400 SPA0522 SPA0523 ulaA   TRUE 0.963 -3.000 0.167 1.000   NA
 903400 903401 SPA0523 SPA0524     TRUE 0.999 -7.000 0.742 0.001 Y NA
 903402 903403 SPA0525 SPA0526 yfcC pta FALSE 0.039 218.000 0.000 1.000   NA
 903403 903404 SPA0526 SPA0527 pta ackA TRUE 0.825 77.000 0.634 1.000   NA
 903405 903406 SPA0528 SPA0529   yfbU TRUE 0.581 83.000 0.221 NA   NA
 903406 10154377 SPA0529 SPA0530 yfbU yfbT TRUE 0.973 11.000 0.375 NA   NA
 10154377 903408 SPA0530 SPA0531 yfbT yfbS TRUE 0.688 76.000 0.308 1.000   NA
 903409 903410 SPA0532 SPA0533   yfbQ FALSE 0.391 94.000 0.104 1.000   NA
 903411 903412 SPA0534 SPA0535 lrhA   FALSE 0.249 80.000 0.000 NA   NA
 903412 903413 SPA0535 SPA0536   nuoA FALSE 0.007 395.000 0.000 NA   NA
 903413 903414 SPA0536 SPA0537 nuoA nuoB TRUE 0.994 16.000 0.377 0.003 Y NA
 903414 903415 SPA0537 SPA0538 nuoB nuoC TRUE 0.974 87.000 0.691 0.003 Y NA
 903415 903416 SPA0538 SPA0539 nuoC nuoE TRUE 0.998 3.000 0.407 0.006 Y NA
 903416 903417 SPA0539 SPA0540 nuoE nuoF TRUE 0.996 -3.000 0.186 0.006 Y NA
 903417 903418 SPA0540 SPA0541 nuoF nuoG TRUE 0.978 25.000 0.180 0.006 Y NA
 903418 903419 SPA0541 SPA0542 nuoG nuoH TRUE 0.999 -3.000 0.664 0.006 Y NA
 903419 903420 SPA0542 SPA0543 nuoH nuoI TRUE 0.995 15.000 0.423 0.006 Y NA
 903420 903421 SPA0543 SPA0544 nuoI nuoJ TRUE 0.997 11.000 0.428 0.006 Y NA
 903421 903422 SPA0544 SPA0545 nuoJ nuoK TRUE 0.997 -3.000 0.269 0.003 Y NA
 903422 903423 SPA0545 SPA0546 nuoK nuoL TRUE 0.997 -3.000 0.211 0.006 Y NA
 903423 903424 SPA0546 SPA0547 nuoL nuoM TRUE 0.745 252.000 0.713 0.002 Y NA
 903424 903425 SPA0547 SPA0548 nuoM nuoN TRUE 0.998 7.000 0.437 0.002 Y NA
 903426 903427 SPA0549 SPA0550   elaC FALSE 0.444 66.000 0.091 1.000   NA
 903428 903429 SPA0551 SPA0552 elaA elaB FALSE 0.461 49.000 0.077 NA   NA
 903429 903430 SPA0552 SPA0553 elaB menF FALSE 0.196 101.000 0.043 NA   NA
 903430 903431 SPA0553 SPA0554 menF menD TRUE 0.867 86.000 0.281 1.000 Y NA
 903431 903432 SPA0554 SPA0555 menD yfbB TRUE 0.982 -3.000 0.355 NA   NA
 903432 903433 SPA0555 SPA0556 yfbB menB TRUE 0.938 15.000 0.280 NA   NA
 903433 903434 SPA0556 SPA0557 menB menC TRUE 0.997 0.000 0.171 0.002 Y NA
 903434 903435 SPA0557 SPA0558 menC menE TRUE 0.991 -3.000 0.283 0.002 N NA
 903435 903436 SPA0558 SPA0559 menE pmrD FALSE 0.127 98.000 0.005 NA   NA
 903437 903438 SPA0560 SPA0561     TRUE 0.991 0.000 0.613 NA   NA
 903438 903439 SPA0561 SPA0562   pqaB TRUE 0.939 -3.000 0.091 1.000   NA
 903439 903440 SPA0562 SPA0563 pqaB   TRUE 0.713 -3.000 0.031 1.000 N NA
 903440 903441 SPA0563 SPA0564   yfbG TRUE 0.996 -3.000 0.447 1.000 Y NA
 903441 903442 SPA0564 SPA0565 yfbG pmrF TRUE 0.992 -3.000 0.220 NA Y NA
 903442 903443 SPA0565 SPA0566 pmrF yfbE TRUE 0.995 3.000 0.378 NA Y NA
 903446 903447 SPA0569 SPA0570 yfaZ   FALSE 0.136 115.000 0.005 1.000   NA
 903447 903448 SPA0570 SPA0571   yfaX FALSE 0.026 250.000 0.000 1.000   NA
 903448 903449 SPA0571 SPA0572 yfaX yfaW TRUE 0.913 2.000 0.090 1.000 N NA
 903449 903450 SPA0572 SPA0573 yfaW yfaV FALSE 0.262 56.000 0.060 1.000 N NA
 903450 903451 SPA0573 SPA0574 yfaV   TRUE 0.823 26.000 0.250 1.000 N NA
 903451 903452 SPA0574 SPA0575     TRUE 0.982 6.000 0.400 NA   NA
 903453 903454 SPA0576 SPA0577     TRUE 0.803 -10.000 0.000 NA   NA
 903454 903455 SPA0577 SPA0578   glpC FALSE 0.013 302.000 0.000 NA   NA
 903455 903456 SPA0578 SPA0579 glpC glpB TRUE 0.993 -3.000 0.547 0.059 N NA
 903456 903457 SPA0579 SPA0580 glpB glpA TRUE 0.992 -10.000 0.650 0.001 N NA
 903458 903459 SPA0581 SPA0582 glpT glpQ TRUE 0.979 5.000 0.396 1.000 N NA
 903462 903463 SPA0585 SPA0586 yfaE nrdB TRUE 0.837 0.000 0.000 1.000 N NA
 903463 903464 SPA0586 SPA0587 nrdB nrdA TRUE 0.845 113.000 0.000 0.001 Y NA
 903464 903465 SPA0587 SPA0588 nrdA ubiG FALSE 0.005 356.000 0.000 1.000 N NA
 903465 903466 SPA0588 SPA0589 ubiG   FALSE 0.048 83.000 0.004 1.000 N NA
 903467 903468 SPA0590 SPA0591     TRUE 0.970 15.000 0.667 1.000 N NA
 903468 903469 SPA0591 SPA0592   gyrA FALSE 0.004 410.000 0.000 1.000 N NA
 903469 903470 SPA0592 SPA0593 gyrA rcsC FALSE 0.260 118.000 0.013 0.097 N NA
 903471 903472 SPA0594 SPA0595 rcsB yojN TRUE 0.989 17.000 0.558 1.000 Y NA
 903472 903473 SPA0595 SPA0596 yojN   FALSE 0.013 304.000 0.000 NA   NA
 903474 903475 SPA0597 SPA0598 ompC yojL FALSE 0.167 115.000 0.066 1.000 N NA
 903475 903476 SPA0598 SPA0599 yojL ada FALSE 0.158 81.000 0.000 1.000 N NA
 903476 903477 SPA0599 SPA0600 ada alkB TRUE 0.788 3.000 0.000 NA N NA
 903477 903478 SPA0600 SPA0601 alkB yojI FALSE 0.225 76.000 0.076 NA N NA
 903480 903481 SPA0603 SPA0604 napF yojF TRUE 0.942 -10.000 0.209 NA   NA
 903481 903482 SPA0604 SPA0605 yojF napA TRUE 0.991 -3.000 0.875 NA N NA
 903482 903483 SPA0605 SPA0606 napA napG TRUE 0.989 7.000 0.243 0.005   NA
 903483 903484 SPA0606 SPA0607 napG napH TRUE 0.992 -13.000 0.795 0.020   NA
 903484 903485 SPA0607 SPA0608 napH napB TRUE 0.926 116.000 0.316 0.009 Y NA
 903485 903486 SPA0608 SPA0609 napB napC TRUE 0.998 10.000 0.490 0.005 Y NA
 903486 903487 SPA0609 SPA0610 napC ccmA FALSE 0.416 21.000 0.043 1.000 N NA
 903487 903488 SPA0610 SPA0611 ccmA ccmB TRUE 0.999 0.000 0.503 0.005 Y NA
 903488 903489 SPA0611 SPA0612 ccmB ccmC TRUE 0.980 52.000 0.501 0.002 Y NA
 903489 903490 SPA0612 SPA0613 ccmC ccmD TRUE 0.985 -3.000 0.501 1.000 N NA
 903490 903491 SPA0613 SPA0614 ccmD ccmE TRUE 0.977 -3.000 0.344 1.000 N NA
 903491 903492 SPA0614 SPA0615 ccmE ccmF TRUE 0.997 -3.000 0.211 0.005 Y NA
 903492 903493 SPA0615 SPA0616 ccmF dsbE TRUE 0.999 -3.000 0.804 0.005 Y NA
 903493 903494 SPA0616 SPA0617 dsbE ccmH TRUE 0.997 -3.000 0.578 1.000 Y NA
 903497 903498 SPA0620 SPA0621     FALSE 0.383 45.000 0.000 NA   NA
 903498 903499 SPA0621 SPA0622   yejM FALSE 0.261 74.000 0.000 NA   NA
 903499 903500 SPA0622 SPA0623 yejM yejL FALSE 0.436 32.000 0.040 NA   NA
 903501 903502 SPA0624 SPA0625 yejK   TRUE 0.522 28.000 0.000 NA   NA
 903503 903504 SPA0626 SPA0627 rplY yejH FALSE 0.327 125.000 0.024 0.015 N NA
 903505 903506 SPA0628 SPA0629 yejD bcr TRUE 0.743 28.000 0.182 1.000 N NA
 903506 903507 SPA0629 SPA0630 bcr   TRUE 0.885 -3.000 0.000 NA   NA
 903507 903508 SPA0630 SPA0631   yejG FALSE 0.014 296.000 0.000 NA   NA
 903509 903510 SPA0632 SPA0633 yejF yejE TRUE 0.993 2.000 0.758 1.000   NA
 903510 903511 SPA0633 SPA0634 yejE yejB TRUE 0.997 0.000 0.833 0.063   NA
 903511 903512 SPA0634 SPA0635 yejB yejA TRUE 0.995 10.000 0.848 0.063   NA
 903512 903513 SPA0635 SPA0636 yejA rtn TRUE 0.618 107.000 0.394 NA N NA
 903513 903514 SPA0636 SPA0637 rtn spr FALSE 0.033 326.000 0.219 NA N NA
 903514 903515 SPA0637 SPA0638 spr yeiU FALSE 0.007 414.000 0.000 NA   NA
 903515 903516 SPA0638 SPA0639 yeiU yeiR TRUE 0.812 36.000 0.275 NA   NA
 903516 903517 SPA0639 SPA0640 yeiR yeiP FALSE 0.062 212.000 0.085 NA   NA
 903517 903518 SPA0640 SPA0641 yeiP   FALSE 0.121 135.000 0.034 NA   NA
 903519 903520 SPA0642 SPA0643     TRUE 0.895 2.000 0.000 NA   NA
 903522 903523 SPA0645 SPA0646 fruB fruK TRUE 0.989 0.000 0.112 1.000 Y NA
 903523 903524 SPA0646 SPA0647 fruK fruA TRUE 0.989 17.000 0.562 1.000 Y NA
 903525 903526 SPA0648 SPA0649 nfo yeiH FALSE 0.215 79.000 0.040 NA   NA
 903527 903528 SPA0650 SPA0651 yeiE lysP FALSE 0.033 190.000 0.000 1.000 N NA
 903528 903529 SPA0651 SPA0652 lysP cirA FALSE 0.005 345.000 0.000 1.000 N NA
 903530 903531 SPA0653 SPA0654     FALSE 0.341 33.000 0.000 1.000 N NA
 10702273 903532 SPA0655 SPA0656     TRUE 0.879 5.000 0.000 NA   NA
 903534 903535 SPA0658 SPA0659 folE yeiB TRUE 0.977 15.000 0.719 NA   NA
 903535 903536 SPA0659 SPA0660 yeiB galS TRUE 0.578 150.000 0.500 NA   NA
 903536 903537 SPA0660 SPA0661 galS mglB FALSE 0.002 499.000 0.000 NA N NA
 903537 10702274 SPA0661 SPA0662 mglB   FALSE 0.159 134.000 0.000 NA   NA
 10702274 903538 SPA0662 SPA0663   mglC TRUE 0.714 16.000 0.000 NA   NA
 903539 903540 SPA0664 SPA0665 yeiA   TRUE 0.945 -6.000 0.062 0.020 N NA
 903540 903541 SPA0665 SPA0666     FALSE 0.034 205.000 0.036 NA   NA
 903541 903542 SPA0666 SPA0667   sanA TRUE 0.823 -3.000 0.019 NA   NA
 903542 903543 SPA0667 SPA0668 sanA cdd FALSE 0.067 177.000 0.045 NA   NA
 903543 903544 SPA0668 SPA0669 cdd yohK FALSE 0.248 154.000 0.198 NA N NA
 903544 903545 SPA0669 SPA0670 yohK yohJ TRUE 0.981 -3.000 0.340 NA   NA
 903545 903546 SPA0670 SPA0671 yohJ   FALSE 0.141 132.000 0.031 1.000   NA
 903547 903548 SPA0672 SPA0673     TRUE 0.976 12.000 0.600 1.000 N NA
 903548 903549 SPA0673 SPA0674     TRUE 0.944 16.000 0.000 1.000 Y NA
 903549 903550 SPA0674 SPA0675     TRUE 0.779 9.000 0.000 1.000 N NA
 903550 903551 SPA0675 SPA0676     TRUE 0.828 15.000 0.120 1.000 N NA
 903551 903552 SPA0676 SPA0677   yohI FALSE 0.050 109.000 0.013 1.000 N NA
 903554 903555 SPA0679 SPA0680 yohG yohF FALSE 0.186 66.000 0.000 1.000 N NA
 903557 903558 SPA0682 SPA0683 yohC pbpG FALSE 0.206 166.000 0.145 NA   NA
 903560 903561 SPA0685 SPA0686 bglX yehZ FALSE 0.092 181.000 0.099 1.000 N NA
 903561 903562 SPA0686 SPA0687 yehZ yehY TRUE 0.935 4.000 0.028 0.063 N NA
 903562 903563 SPA0687 SPA0688 yehY yehX TRUE 0.968 -7.000 0.039 1.000 Y NA
 903563 903564 SPA0688 SPA0689 yehX yehW TRUE 0.992 -16.000 0.542 1.000 Y NA
 903565 903566 SPA0690 SPA0691   yehV TRUE 0.860 60.000 0.667 NA   NA
 903567 903568 SPA0692 SPA0693 yehU yehT TRUE 0.999 -3.000 0.877 0.017 Y NA
 903568 903569 SPA0693 SPA0694 yehT yehS FALSE 0.370 47.000 0.051 NA   NA
 903570 903571 SPA0695 SPA0696   yehR FALSE 0.080 172.000 0.000 NA   NA
 903571 903572 SPA0696 SPA0697 yehR metG FALSE 0.025 241.000 0.000 NA   NA
 903573 903574 SPA0698 SPA0699 mrp yehE FALSE 0.017 278.000 0.000 NA   NA
 903574 903575 SPA0699 SPA0700 yehE stcA FALSE 0.016 279.000 0.000 NA   NA
 903575 903576 SPA0700 SPA0701 stcA stcB TRUE 0.881 62.000 0.222 1.000 Y NA
 903576 903577 SPA0701 SPA0702 stcB stcC TRUE 0.986 29.000 1.000 1.000 Y NA
 903577 903578 SPA0702 SPA0703 stcC stcD TRUE 0.963 16.000 0.500 1.000   NA
 903580 903581 SPA0705 SPA0706 thiM thiD TRUE 0.983 -13.000 0.037 0.005 Y NA
 903581 903582 SPA0706 SPA0707 thiD yegW FALSE 0.304 36.000 0.049 1.000 N NA
 903583 903584 SPA0708 SPA0709 yegV yegU TRUE 0.986 -3.000 0.600 NA N NA
 903584 903585 SPA0709 SPA0710 yegU yegT TRUE 0.982 -3.000 0.364 NA   NA
 903588 903589 SPA0713 SPA0714     FALSE 0.182 122.000 0.000 NA   NA
 903590 903591 SPA0715 SPA0716   yegQ FALSE 0.005 467.000 0.000 NA   NA
 903592 903593 SPA0717 SPA0718     FALSE 0.011 318.000 0.000 NA   NA
 903593 903594 SPA0718 SPA0719     FALSE 0.025 240.000 0.000 NA   NA
 903594 903595 SPA0719 SPA0720     FALSE 0.006 437.000 0.000 NA   NA
 903595 903596 SPA0720 SPA0721     TRUE 0.850 10.000 0.000 NA   NA
 903596 903597 SPA0721 SPA0722     FALSE 0.167 130.000 0.000 NA   NA
 903597 903598 SPA0722 SPA0723     FALSE 0.267 71.000 0.000 NA   NA
 903598 903599 SPA0723 SPA0724     FALSE 0.035 218.000 0.000 NA   NA
 903599 903600 SPA0724 SPA0725     FALSE 0.275 69.000 0.000 NA   NA
 903600 903601 SPA0725 SPA0726     FALSE 0.212 110.000 0.000 NA   NA
 903601 903602 SPA0726 SPA0727     FALSE 0.280 68.000 0.000 NA   NA
 903602 903603 SPA0727 SPA0728     FALSE 0.220 101.000 0.000 NA   NA
 903603 903604 SPA0728 SPA0729     FALSE 0.219 103.000 0.000 NA   NA
 903605 903606 SPA0730 SPA0731     FALSE 0.420 40.000 0.000 NA   NA
 903606 903607 SPA0731 SPA0732     TRUE 0.973 11.000 0.375 NA   NA
 903607 903608 SPA0732 SPA0733     TRUE 0.968 22.000 1.000 NA   NA
 903608 903609 SPA0733 SPA0734   baeR FALSE 0.004 587.000 0.000 NA   NA
 903609 903610 SPA0734 SPA0735 baeR baeS TRUE 0.998 -3.000 0.591 0.017 Y NA
 903610 903611 SPA0735 SPA0736 baeS yegB TRUE 0.946 0.000 0.139 1.000 N NA
 903611 903612 SPA0736 SPA0737 yegB yegO TRUE 0.982 -3.000 0.438 1.000 N NA
 903612 903613 SPA0737 SPA0738 yegO yegN TRUE 0.982 1.000 0.000 NA Y NA
 903613 10702275 SPA0738 SPA0739 yegN   TRUE 0.900 0.000 0.000 NA   NA
 10702275 903614 SPA0739 SPA0740     FALSE 0.139 144.000 0.000 NA   NA
 903614 903615 SPA0740 SPA0741   yegD FALSE 0.290 65.000 0.000 NA   NA
 903618 903619 SPA0744 SPA0745 udk dcd TRUE 0.742 91.000 0.098 1.000 Y NA
 903619 903620 SPA0745 SPA0746 dcd asmA FALSE 0.293 39.000 0.057 NA N NA
 903622 903623 SPA0748 SPA0749 wza wzb TRUE 0.968 6.000 0.286 1.000 N NA
 903623 903624 SPA0749 SPA0750 wzb wzc TRUE 0.989 -3.000 0.667 1.000 N NA
 903624 903625 SPA0750 SPA0751 wzc wcaA TRUE 0.839 87.000 0.231 NA Y NA
 903625 903626 SPA0751 SPA0752 wcaA wcaB TRUE 0.968 3.000 0.259 NA N NA
 903626 903627 SPA0752 SPA0753 wcaB wcaC TRUE 0.968 -3.000 0.259 1.000 N NA
 903627 903628 SPA0753 SPA0754 wcaC wcaD TRUE 0.956 -25.000 0.400 NA   NA
 903628 903629 SPA0754 SPA0755 wcaD wcaE TRUE 0.959 13.000 0.333 NA   NA
 903629 903630 SPA0755 SPA0756 wcaE wcaF TRUE 0.790 16.000 0.077 NA   NA
 903630 903631 SPA0756 SPA0757 wcaF gmd TRUE 0.608 24.000 0.000 1.000   NA
 903631 903632 SPA0757 SPA0758 gmd fcl TRUE 0.993 3.000 0.000 0.009 Y NA
 903632 903633 SPA0758 SPA0759 fcl wcaH TRUE 0.964 3.000 0.217 1.000 N NA
 903633 903634 SPA0759 SPA0760 wcaH wcaI TRUE 0.921 -3.000 0.108 1.000 N NA
 903634 903635 SPA0760 SPA0761 wcaI manC TRUE 0.989 -3.000 0.123 1.000 Y NA
 903635 903636 SPA0761 SPA0762 manC manB TRUE 0.814 111.000 1.000 1.000 N NA
 903636 10702276 SPA0762 SPA0763 manB   FALSE 0.338 54.000 0.000 NA   NA
 10702276 903637 SPA0763 SPA0764   wzxC FALSE 0.219 102.000 0.000 NA   NA
 903637 10702277 SPA0764 SPA0765 wzxC   TRUE 0.601 22.000 0.000 NA   NA
 10702277 903638 SPA0765 SPA0766   wcaL TRUE 0.885 -3.000 0.000 NA   NA
 903638 903639 SPA0766 SPA0767 wcaL wcaM TRUE 0.967 11.000 0.292 1.000   NA
 903639 10702278 SPA0767 SPA0768 wcaM   FALSE 0.361 49.000 0.000 NA   NA
 10702278 903640 SPA0768 SPA0769   rfbB FALSE 0.008 377.000 0.000 NA   NA
 903640 903641 SPA0769 SPA0770 rfbB rfbD TRUE 0.996 0.000 0.084 0.002 Y NA
 903641 903642 SPA0770 SPA0771 rfbD rfbA TRUE 0.916 48.000 0.053 0.003 Y NA
 903642 903643 SPA0771 SPA0772 rfbA rfbC TRUE 0.989 10.000 0.211 1.000 Y NA
 903643 903644 SPA0772 SPA0773 rfbC rfbI TRUE 0.798 6.000 0.000 1.000 N NA
 903644 903645 SPA0773 SPA0774 rfbI rfbF TRUE 0.493 16.000 0.038 1.000 N NA
 903645 903646 SPA0774 SPA0775 rfbF rfbG TRUE 0.997 5.000 0.624 1.000 Y NA
 903646 903647 SPA0775 SPA0776 rfbG rfbH TRUE 0.955 27.000 0.247 1.000 Y NA
 903647 903648 SPA0776 SPA0777 rfbH rfbS TRUE 0.909 36.000 0.018 0.028 Y NA
 903648 903649 SPA0777 SPA0778 rfbS rfbE TRUE 0.987 -19.000 0.111 0.004 Y NA
 903649 903650 SPA0778 SPA0779 rfbE rfbX TRUE 0.532 71.000 0.167 NA   NA
 903650 903651 SPA0779 SPA0780 rfbX rfbV TRUE 0.951 2.000 0.118 NA   NA
 903651 903652 SPA0780 SPA0781 rfbV rfbU FALSE 0.010 575.000 0.118 NA   NA
 903652 903653 SPA0781 SPA0782 rfbU rfbV TRUE 0.951 2.000 0.118 NA   NA
 903653 903654 SPA0782 SPA0783 rfbV rfbU FALSE 0.010 575.000 0.118 NA   NA
 903654 903655 SPA0783 SPA0784 rfbU rfbV TRUE 0.951 2.000 0.118 NA   NA
 903655 903656 SPA0784 SPA0785 rfbV rfbU FALSE 0.028 575.000 0.000 NA Y NA
 903656 903657 SPA0785 SPA0786 rfbU rfbN TRUE 0.979 1.000 0.023 NA Y NA
 903657 903658 SPA0786 SPA0787 rfbN rfbM TRUE 0.979 1.000 0.023 NA Y NA
 903658 903659 SPA0787 SPA0788 rfbM rfbK TRUE 0.672 -13.000 0.000 1.000 N NA
 903659 903660 SPA0788 SPA0789 rfbK rfbP FALSE 0.171 72.000 0.000 1.000 N NA
 903660 903661 SPA0789 SPA0790 rfbP gnd FALSE 0.015 164.000 0.005 1.000 N NA
 903661 903662 SPA0790 SPA0791 gnd ugd FALSE 0.015 237.000 0.000 1.000 N NA
 903662 903663 SPA0791 SPA0792 ugd cld TRUE 0.730 149.000 0.250 1.000 Y NA
 903664 903665 SPA0793 SPA0794 hisI hisF TRUE 0.998 -6.000 0.430 0.003 Y NA
 903665 903666 SPA0794 SPA0795 hisF hisA TRUE 0.996 -18.000 0.433 0.003 Y NA
 903666 903667 SPA0795 SPA0796 hisA hisH TRUE 0.997 0.000 0.210 0.003 Y NA
 903667 903668 SPA0796 SPA0797 hisH hisB TRUE 0.996 0.000 0.128 0.003 Y NA
 903668 903669 SPA0797 SPA0798 hisB hisC TRUE 0.998 -3.000 0.341 0.003 Y NA
 903669 903670 SPA0798 SPA0799 hisC hisD TRUE 0.998 -3.000 0.294 0.003 Y NA
 903670 903671 SPA0799 SPA0800 hisD hisG TRUE 0.909 103.000 0.171 0.003 Y NA
 903672 903673 SPA0801 SPA0802 yeeZ yeeY FALSE 0.112 46.000 0.015 1.000 N NA
 903673 903674 SPA0802 SPA0803 yeeY yeeF FALSE 0.009 280.000 0.000 1.000 N NA
 903675 10702279 SPA0804 SPA0805 sbcB   FALSE 0.008 367.000 0.000 NA   NA
 903676 903677 SPA0807 SPA0808 phsB phsC TRUE 0.998 -3.000 0.600 0.058 Y NA
 903677 10702280 SPA0808 SPA0809 phsC   FALSE 0.179 124.000 0.000 NA   NA
 10702280 903678 SPA0809 SPA0810   sbmC FALSE 0.119 151.000 0.000 NA   NA
 903678 903679 SPA0810 SPA0811 sbmC yeeA FALSE 0.306 119.000 0.096 NA   NA
 903679 903680 SPA0811 SPA0812 yeeA yeeX FALSE 0.078 245.000 0.180 NA   NA
 903681 903682 SPA0813 SPA0814 pduX pduW TRUE 0.730 58.000 0.080 0.001 N NA
 903682 903683 SPA0814 SPA0815 pduW pduV TRUE 0.938 -15.000 0.292 1.000 N NA
 903683 903684 SPA0815 SPA0816 pduV   TRUE 0.991 5.000 0.200 1.000 Y NA
 903684 903685 SPA0816 SPA0817   pduT TRUE 0.939 0.000 0.133 NA N NA
 903685 903686 SPA0817 SPA0818 pduT pduS TRUE 0.997 3.000 0.714 NA Y NA
 903686 903687 SPA0818 SPA0819 pduS pduQ TRUE 0.963 24.000 0.259 1.000 Y NA
 903687 903688 SPA0819 SPA0820 pduQ pduP TRUE 0.984 12.000 0.000 0.033 Y NA
 903688 903689 SPA0820 SPA0821 pduP pduO TRUE 0.899 -3.000 0.000 1.000   NA
 903689 903690 SPA0821 SPA0822 pduO pduN TRUE 0.967 10.000 0.268 NA   NA
 903690 903691 SPA0822 SPA0823 pduN pduM TRUE 0.978 4.000 0.296 NA   NA
 903691 903692 SPA0823 SPA0824 pduM pduL TRUE 0.973 -3.000 0.242 NA   NA
 903692 903693 SPA0824 SPA0825 pduL pduK TRUE 0.994 0.000 0.242 NA Y NA
 903693 903694 SPA0825 SPA0826 pduK pduJ TRUE 0.997 4.000 0.645 NA Y NA
 903694 903695 SPA0826 SPA0827 pduJ pduH TRUE 0.649 19.000 0.000 NA   NA
 903695 903696 SPA0827 SPA0828 pduH pduG TRUE 0.803 -10.000 0.000 NA   NA
 903696 903697 SPA0828 SPA0829 pduG pduE FALSE 0.302 207.000 0.500 NA   NA
 903697 903698 SPA0829 SPA0830 pduE pduD TRUE 0.993 15.000 0.759 0.001   NA
 903698 903699 SPA0830 SPA0831 pduD pduC TRUE 0.967 11.000 0.000 0.001   NA
 903699 903700 SPA0831 SPA0832 pduC pduB TRUE 0.514 19.000 0.000 1.000 N NA
 903700 903701 SPA0832 SPA0833 pduB pduA FALSE 0.209 108.000 0.083 NA N NA
 10702281 903702 SPA0834 SPA0835   pocR FALSE 0.077 174.000 0.000 NA   NA
 903702 10702282 SPA0835 SPA0836 pocR   FALSE 0.005 489.000 0.000 NA   NA
 10702282 903703 SPA0836 SPA0837   cbiB TRUE 0.885 -3.000 0.000 NA   NA
 903703 903704 SPA0837 SPA0838 cbiB cbiC TRUE 0.991 11.000 0.107 0.009 Y NA
 903704 903705 SPA0838 SPA0839 cbiC cbiD TRUE 0.996 0.000 0.168 0.009 Y NA
 903705 903706 SPA0839 SPA0840 cbiD cbiE TRUE 0.993 -6.000 0.126 0.009 Y NA
 903706 903707 SPA0840 SPA0841 cbiE cbiT TRUE 0.996 -10.000 0.300 0.001 Y NA
 903707 903708 SPA0841 SPA0842 cbiT cbiF TRUE 0.982 -16.000 0.056 0.009 Y NA
 903708 903709 SPA0842 SPA0843 cbiF cbiG TRUE 0.995 -19.000 0.397 0.009 Y NA
 903709 903710 SPA0843 SPA0844 cbiG cbiH TRUE 0.998 0.000 0.352 0.009 Y NA
 903710 903711 SPA0844 SPA0845 cbiH cbiJ TRUE 0.998 -3.000 0.423 0.009 Y NA
 903711 903712 SPA0845 SPA0846 cbiJ cbiK TRUE 0.980 3.000 0.029 1.000 Y NA
 903712 903713 SPA0846 SPA0847 cbiK cbiL TRUE 0.981 -3.000 0.048 1.000 Y NA
 903713 903714 SPA0847 SPA0848 cbiL cbiM TRUE 0.518 87.000 0.058 0.009 N NA
 903714 903715 SPA0848 SPA0849 cbiM cbiN TRUE 0.999 2.000 0.861 0.009 Y NA
 903715 903716 SPA0849 SPA0850 cbiN cbiQ TRUE 0.998 -13.000 0.804 0.001 Y NA
 903716 903717 SPA0850 SPA0851 cbiQ cbiO TRUE 0.995 9.000 0.152 0.002 Y NA
 903717 903718 SPA0851 SPA0852 cbiO cbiP TRUE 0.725 -3.000 0.033 1.000 N NA
 903718 903719 SPA0852 SPA0853 cbiP cobU TRUE 0.976 -3.000 0.003 1.000 Y NA
 903719 903720 SPA0853 SPA0854 cobU cobS TRUE 0.976 -3.000 0.003 1.000 Y NA
 903720 903721 SPA0854 SPA0855 cobS cobT TRUE 0.952 27.000 0.056 0.009 Y NA
 903721 903722 SPA0855 SPA0856 cobT erfK FALSE 0.161 78.000 0.015 NA   NA
 903722 903723 SPA0856 SPA0857 erfK   FALSE 0.352 51.000 0.000 NA   NA
 10702283 903725 SPA0859 SPA0860     FALSE 0.146 141.000 0.000 NA   NA
 903725 903726 SPA0860 SPA0861     FALSE 0.005 501.000 0.000 NA   NA
 903726 903727 SPA0861 SPA0862     TRUE 0.989 -6.000 0.800 NA   NA
 903731 903732 SPA0866 SPA0867     TRUE 0.891 3.000 0.000 NA   NA
 903733 903734 SPA0868 SPA0869 asnT yeeI FALSE 0.220 101.000 0.000 NA   NA
 903735 903736 SPA0870 SPA0871 serU   FALSE 0.013 306.000 0.000 NA   NA
 903736 903737 SPA0871 SPA0872   umuD FALSE 0.173 127.000 0.000 NA   NA
 903737 903738 SPA0872 SPA0873 umuD umuC TRUE 0.824 3.000 0.000 1.000 N NA
 903738 903739 SPA0873 SPA0874 umuC cspB FALSE 0.003 446.000 0.000 1.000 N NA
 10702284 903741 SPA0876 SPA0877   yedJ FALSE 0.249 80.000 0.000 NA   NA
 903741 903742 SPA0877 SPA0878 yedJ dcm FALSE 0.288 74.000 0.000 1.000   NA
 903742 903743 SPA0878 SPA0879 dcm vsr TRUE 0.976 -19.000 0.000 0.058 Y NA
 903745 903746 SPA0881 SPA0882 yedI   TRUE 0.594 17.000 0.025 NA   NA
 903746 903747 SPA0882 SPA0883     FALSE 0.277 165.000 0.208 NA   NA
 903748 903749 SPA0884 SPA0885 yedP   FALSE 0.036 215.000 0.000 NA   NA
 903749 903750 SPA0885 SPA0886   yodD TRUE 0.739 15.000 0.000 NA   NA
 903752 903753 SPA0888 SPA0889 rcsA fliR FALSE 0.009 282.000 0.000 1.000 N NA
 903753 903754 SPA0889 SPA0890 fliR fliQ TRUE 0.990 9.000 0.028 0.003 Y NA
 903754 903755 SPA0890 SPA0891 fliQ fliP TRUE 0.999 10.000 0.827 0.010 Y NA
 903755 903756 SPA0891 SPA0892 fliP fliO TRUE 0.993 0.000 0.203 1.000 Y NA
 903756 903757 SPA0892 SPA0893 fliO fliN TRUE 0.996 0.000 0.443 1.000 Y NA
 903757 903758 SPA0893 SPA0894 fliN fliM TRUE 0.996 -3.000 0.137 0.001 Y NA
 903758 903759 SPA0894 SPA0895 fliM fliL TRUE 0.999 5.000 0.957 0.001 Y NA
 903759 903760 SPA0895 SPA0896 fliL fliK TRUE 0.752 105.000 0.119 1.000 Y NA
 903760 903761 SPA0896 SPA0897 fliK fliJ TRUE 0.998 -3.000 0.317 0.006 Y NA
 903761 903762 SPA0897 SPA0898 fliJ fliI TRUE 0.925 22.000 0.073 1.000 Y NA
 903762 903763 SPA0898 SPA0899 fliI fliH TRUE 0.984 0.000 0.000 1.000 Y NA
 903763 903764 SPA0899 SPA0900 fliH fliG TRUE 0.987 -7.000 0.005 0.003 Y NA
 903764 903765 SPA0900 SPA0901 fliG fliF TRUE 0.995 -7.000 0.220 0.006 Y NA
 903767 903768 SPA0903 SPA0904   yedF FALSE 0.014 299.000 0.000 NA   NA
 903768 903769 SPA0904 SPA0905 yedF yedE TRUE 0.993 -3.000 0.844 NA   NA
 903771 903772 SPA0907 SPA0908 amyA fliT FALSE 0.466 72.000 0.115 1.000   NA
 903772 903773 SPA0908 SPA0909 fliT fliS TRUE 0.984 0.000 0.324 1.000   NA
 903773 903774 SPA0909 SPA0910 fliS fliD TRUE 0.994 15.000 0.284 0.002 Y NA
 903775 10702285 SPA0911 SPA0912 fliC   FALSE 0.251 79.000 0.000 NA   NA
 10702285 903776 SPA0912 SPA0913   fliA FALSE 0.050 197.000 0.000 NA   NA
 903776 903777 SPA0913 SPA0914 fliA fliZ TRUE 0.511 59.000 0.108 1.000   NA
 903777 903778 SPA0914 SPA0915 fliZ fliY FALSE 0.463 147.000 0.280 1.000   NA
 903778 903779 SPA0915 SPA0916 fliY yedO TRUE 0.802 154.000 0.469 1.000 Y NA
 903779 903780 SPA0916 SPA0917 yedO yecS TRUE 0.915 21.000 0.050 1.000 Y NA
 903780 903781 SPA0917 SPA0918 yecS yecC TRUE 0.990 -3.000 0.150 1.000 Y NA
 903781 903782 SPA0918 SPA0919 yecC sdiA FALSE 0.026 233.000 0.071 1.000 N NA
 903783 903784 SPA0920 SPA0921 yecF   TRUE 0.885 -3.000 0.000 NA   NA
 903785 903786 SPA0922 SPA0923 sirA uvrC TRUE 0.967 -3.000 0.086 0.025 N NA
 903786 903787 SPA0923 SPA0924 uvrC pgsA TRUE 0.624 57.000 0.227 1.000 N NA
 903787 903788 SPA0924 SPA0925 pgsA glyW FALSE 0.116 152.000 0.000 NA   NA
 903788 903789 SPA0925 SPA0926 glyW cysT FALSE 0.328 56.000 0.000 NA   NA
 903789 903790 SPA0926 SPA0927 cysT leuZ TRUE 0.739 15.000 0.000 NA   NA
 903790 903791 SPA0927 SPA0928 leuZ   FALSE 0.022 253.000 0.000 NA   NA
 903791 903792 SPA0928 SPA0929     FALSE 0.033 220.000 0.000 NA   NA
 903792 903793 SPA0929 SPA0930     FALSE 0.038 213.000 0.000 NA   NA
 903793 903794 SPA0930 SPA0931   yecA FALSE 0.026 239.000 0.000 NA   NA
 903797 903798 SPA0934 SPA0935 ftnA   FALSE 0.018 240.000 0.029 NA   NA
 903798 903799 SPA0935 SPA0936   yecI FALSE 0.010 331.000 0.000 NA   NA
 903800 903801 SPA0937 SPA0938 araH   FALSE 0.207 112.000 0.000 NA   NA
 903801 903802 SPA0938 SPA0939   otsB FALSE 0.025 223.000 0.037 NA   NA
 903802 903803 SPA0939 SPA0940 otsB otsA TRUE 0.985 -25.000 0.068 0.001 Y NA
 903804 903805 SPA0941 SPA0942 yecG   TRUE 0.885 -3.000 0.000 NA   NA
 903806 903807 SPA0943 SPA0944 flhD flhC TRUE 0.979 -3.000 0.000 0.001   NA
 903807 903808 SPA0944 SPA0945 flhC motA TRUE 0.646 126.000 0.408 1.000   NA
 903808 903809 SPA0945 SPA0946 motA motB TRUE 0.996 -3.000 0.429 1.000 Y NA
 903809 903810 SPA0946 SPA0947 motB cheA TRUE 0.998 5.000 0.913 1.000 Y NA
 903810 903811 SPA0947 SPA0948 cheA cheW TRUE 0.992 21.000 0.447 0.004 Y NA
 903811 10702286 SPA0948 SPA0949 cheW   FALSE 0.026 237.000 0.000 NA   NA
 10702286 903812 SPA0949 SPA0950   cheR FALSE 0.096 161.000 0.000 NA   NA
 903812 903813 SPA0950 SPA0951 cheR cheB TRUE 0.986 -3.000 0.087 1.000 Y NA
 903813 903814 SPA0951 SPA0952 cheB ald TRUE 0.993 18.000 0.467 0.014 Y NA
 903814 903815 SPA0952 SPA0953 ald cheZ TRUE 0.971 11.000 0.000 1.000 Y NA
 903815 903816 SPA0953 SPA0954 cheZ flhB FALSE 0.277 194.000 0.000 1.000 Y NA
 903816 903817 SPA0954 SPA0955 flhB flhA TRUE 0.996 -7.000 0.287 0.010 Y NA
 903817 903818 SPA0955 SPA0956 flhA flhE TRUE 0.989 0.000 0.158 0.003   NA
 903821 903822 SPA0959 SPA0960   argS FALSE 0.009 189.000 0.002 1.000 N NA
 903823 903824 SPA0961 SPA0962 yecM cutC TRUE 0.681 20.000 0.057 1.000   NA
 903825 903826 SPA0963 SPA0964 yecP yecO TRUE 0.979 -3.000 0.315 NA   NA
 903826 903827 SPA0964 SPA0965 yecO yecN TRUE 0.551 41.000 0.089 NA   NA
 903827 903828 SPA0965 SPA0966 yecN yecE TRUE 0.562 53.000 0.126 NA   NA
 903828 903829 SPA0966 SPA0967 yecE yecD TRUE 0.932 -3.000 0.089 NA   NA
 903830 903831 SPA0968 SPA0969 aspS ntpA FALSE 0.136 103.000 0.050 1.000 N NA
 903831 903832 SPA0969 SPA0970 ntpA yebC FALSE 0.431 30.000 0.035 NA   NA
 903832 903833 SPA0970 SPA0971 yebC ruvC TRUE 0.809 37.000 0.277 NA   NA
 903835 903836 SPA0973 SPA0974   ruvA FALSE 0.009 360.000 0.000 NA   NA
 903836 903837 SPA0974 SPA0975 ruvA ruvB TRUE 0.998 9.000 0.549 0.002 Y NA
 903838 903839 SPA0976 SPA0977 yebI znuC TRUE 0.999 -3.000 0.755 0.093 Y NA
 903840 903841 SPA0978 SPA0979 znuA yebA TRUE 0.823 16.000 0.131 1.000 N NA
 903841 903842 SPA0979 SPA0980 yebA msbB TRUE 0.840 117.000 0.299 1.000 Y NA
 903843 903844 SPA0981 SPA0982 pykA hexR FALSE 0.163 124.000 0.071 1.000 N NA
 903845 903846 SPA0983 SPA0984 zwf edd FALSE 0.151 235.000 0.041 1.000 Y NA
 903846 903847 SPA0984 SPA0985 edd eda TRUE 0.965 38.000 0.523 1.000 Y NA
 10702287 903849 SPA0987 SPA0988   yebF FALSE 0.280 68.000 0.000 NA   NA
 903849 903850 SPA0988 SPA0989 yebF yebE FALSE 0.225 94.000 0.000 NA   NA
 903850 903851 SPA0989 SPA0990 yebE opdB FALSE 0.065 214.000 0.092 NA   NA
 903852 903853 SPA0991 SPA0992 exoX   TRUE 0.952 24.000 0.667 1.000   NA
 903853 903854 SPA0992 SPA0993   holE TRUE 0.561 108.000 0.222 1.000   NA
 903855 903856 SPA0994 SPA0995 yobA   TRUE 0.991 1.000 0.613 1.000   NA
 903856 903857 SPA0995 SPA0996     TRUE 0.970 17.000 0.704 NA   NA
 903857 903858 SPA0996 SPA0997     FALSE 0.304 61.000 0.000 NA   NA
 903860 903861 SPA1000 SPA1001     FALSE 0.004 648.000 0.000 NA   NA
 903861 903862 SPA1001 SPA1002     FALSE 0.003 985.000 0.000 NA   NA
 903864 903865 SPA1004 SPA1005     FALSE 0.098 159.000 0.000 NA   NA
 903867 903868 SPA1007 SPA1008     FALSE 0.047 200.000 0.000 NA   NA
 903868 903869 SPA1008 SPA1009     TRUE 0.850 10.000 0.000 NA   NA
 903869 903870 SPA1009 SPA1010   pagO FALSE 0.162 133.000 0.000 NA   NA
 903870 903871 SPA1010 SPA1011 pagO   FALSE 0.003 1289.000 0.000 NA   NA
 903872 903873 SPA1013 SPA1014     FALSE 0.086 166.000 0.000 NA   NA
 903875 903876 SPA1016 SPA1017     FALSE 0.012 316.000 0.000 NA   NA
 903877 903878 SPA1018 SPA1019 sopE2   FALSE 0.015 285.000 0.000 NA   NA
 903878 903879 SPA1019 SPA1020   pphA FALSE 0.031 227.000 0.000 NA   NA
 903880 903881 SPA1021 SPA1022 yebW   TRUE 0.650 111.000 0.353 NA   NA
 903881 903882 SPA1022 SPA1023   yebU FALSE 0.372 114.000 0.121 NA   NA
 903882 903883 SPA1023 SPA1024 yebU   TRUE 0.737 78.000 0.420 NA   NA
 903883 903884 SPA1024 SPA1025   yebS TRUE 0.978 -37.000 0.840 NA   NA
 903885 10702290 SPA1026 SPA1027 yebR   FALSE 0.221 98.000 0.000 NA   NA
 10702290 903886 SPA1027 SPA1028   prc TRUE 0.629 20.000 0.000 NA   NA
 903886 903887 SPA1028 SPA1029 prc htpX FALSE 0.122 194.000 0.042 0.024 N NA
 903891 903892 SPA1033 SPA1034 yobG   TRUE 0.783 71.000 0.500 NA   NA
 903892 903893 SPA1034 SPA1035   yobF FALSE 0.004 649.000 0.000 NA   NA
 903893 903894 SPA1035 SPA1036 yobF cspC TRUE 0.936 13.000 0.214 NA   NA
 903894 903895 SPA1036 SPA1037 cspC ftsI FALSE 0.019 220.000 0.000 1.000 N NA
 903895 903896 SPA1037 SPA1038 ftsI rrmA FALSE 0.296 66.000 0.045 1.000   NA
 903897 903898 SPA1039 SPA1040 yebN   FALSE 0.009 356.000 0.000 NA   NA
 903898 903899 SPA1040 SPA1041   manZ TRUE 0.880 58.000 0.755 NA   NA
 903899 903900 SPA1041 SPA1042 manZ manY TRUE 0.999 4.000 0.939 0.011 Y NA
 903900 903901 SPA1042 SPA1043 manY manX TRUE 0.922 53.000 0.106 0.011 Y NA
 903902 903903 SPA1044 SPA1045   yoaE TRUE 0.738 -12.000 0.034 NA   NA
 903904 903905 SPA1046 SPA1047   sdaA TRUE 0.827 36.000 0.389 NA N NA
 903905 903906 SPA1047 SPA1048 sdaA yeaB FALSE 0.095 282.000 0.409 1.000 N NA
 903906 903907 SPA1048 SPA1049 yeaB pabB TRUE 0.926 4.000 0.116 1.000 N NA
 903910 903911 SPA1052 SPA1053 yoaA yeaZ FALSE 0.336 58.000 0.082 1.000 N NA
 903911 903912 SPA1053 SPA1054 yeaZ slp FALSE 0.088 72.000 0.024 1.000 N NA
 903912 903913 SPA1054 SPA1055 slp fadD FALSE 0.100 205.000 0.169 1.000 N NA
 903913 903914 SPA1055 SPA1056 fadD rnd FALSE 0.338 85.000 0.115 1.000 N NA
 903915 903916 SPA1057 SPA1058 minE minD TRUE 0.997 4.000 0.618 NA Y NA
 903916 903917 SPA1058 SPA1059 minD minC TRUE 0.978 24.000 0.466 1.000 Y NA
 903918 903919 SPA1060 SPA1061 ycgL ycgM FALSE 0.379 50.000 0.056 NA   NA
 903919 903920 SPA1061 SPA1062 ycgM ycgN FALSE 0.335 93.000 0.088 NA   NA
 903920 903921 SPA1062 SPA1063 ycgN   FALSE 0.009 352.000 0.000 NA   NA
 903921 903922 SPA1063 SPA1064     FALSE 0.054 193.000 0.000 NA   NA
 903923 903924 SPA1065 SPA1066   dsbB FALSE 0.068 109.000 0.036 NA N NA
 903924 903925 SPA1066 SPA1067 dsbB nhaB TRUE 0.676 142.000 0.723 1.000 N NA
 903928 903929 SPA1070 SPA1071 dadA dadX TRUE 0.885 14.000 0.168 1.000 N NA
 903930 903931 SPA1072 SPA1073 ycgO ycgQ FALSE 0.265 97.000 0.103 NA N NA
 903934 903935 SPA1077 SPA1078 treA   FALSE 0.021 214.000 0.000 1.000 N NA
 903935 903936 SPA1078 SPA1079     FALSE 0.010 344.000 0.000 NA   NA
 903936 903937 SPA1079 SPA1080   appB TRUE 0.878 13.000 0.105 NA   NA
 903937 903938 SPA1080 SPA1081 appB appC TRUE 0.990 12.000 0.158 0.056 Y NA
 903938 903939 SPA1081 SPA1082 appC hyaF FALSE 0.259 75.000 0.000 NA   NA
 903939 903940 SPA1082 SPA1083 hyaF hyaE TRUE 0.921 -3.000 0.077 NA   NA
 903940 903941 SPA1083 SPA1084 hyaE hyaD TRUE 0.885 -10.000 0.096 NA   NA
 903941 903942 SPA1084 SPA1085 hyaD hyaC TRUE 0.991 -3.000 0.177 1.000 Y NA
 903942 903943 SPA1085 SPA1086 hyaC hyaB TRUE 0.989 19.000 0.355 0.056 Y NA
 903943 10702292 SPA1086 SPA1087 hyaB   TRUE 0.885 -3.000 0.000 NA   NA
 903945 903946 SPA1089 SPA1090 ychF pth TRUE 0.780 117.000 0.184 1.000 Y NA
 903948 903949 SPA1092 SPA1093 ychM prsA FALSE 0.059 125.000 0.027 1.000 N NA
 903949 903950 SPA1093 SPA1094 prsA ipk FALSE 0.004 266.000 0.018 1.000 N NA
 903950 903951 SPA1094 SPA1095 ipk hemM TRUE 0.707 0.000 0.024 1.000 N NA
 903952 903953 SPA1096 SPA1097 hemA prfA TRUE 0.809 41.000 0.171 0.050 N NA
 903953 903954 SPA1097 SPA1098 prfA hemK TRUE 0.997 0.000 0.229 0.050 Y NA
 903954 903955 SPA1098 SPA1099 hemK sirC TRUE 0.942 -3.000 0.109 NA   NA
 903955 903956 SPA1099 SPA1100 sirC ychA TRUE 0.966 4.000 0.195 NA   NA
 903956 903957 SPA1100 SPA1101 ychA kdsA TRUE 0.600 38.000 0.089 1.000   NA
 903961 903962 SPA1106 SPA1107 narL narX TRUE 0.997 -7.000 0.521 0.016 Y NA
 903963 903964 SPA1108 SPA1109 narK narG FALSE 0.004 389.000 0.000 1.000 N NA
 903964 903965 SPA1109 SPA1110 narG narH TRUE 0.999 -3.000 0.471 0.001 Y NA
 903965 903966 SPA1110 SPA1111 narH narJ TRUE 0.999 -3.000 0.588 0.005 Y NA
 903966 903967 SPA1111 SPA1112 narJ narI TRUE 0.999 0.000 0.500 0.005 Y NA
 903967 903968 SPA1112 SPA1113 narI   FALSE 0.028 242.000 0.000 1.000   NA
 903969 903970 SPA1114 SPA1115     FALSE 0.333 55.000 0.000 NA   NA
 903970 903971 SPA1115 SPA1116     FALSE 0.333 55.000 0.000 NA   NA
 903971 903972 SPA1116 SPA1117     FALSE 0.333 55.000 0.000 NA   NA
 903972 903973 SPA1117 SPA1118     FALSE 0.333 55.000 0.000 NA   NA
 903973 903974 SPA1118 SPA1119   tyrT FALSE 0.307 60.000 0.000 NA   NA
 903974 903975 SPA1119 SPA1120 tyrT tyrT FALSE 0.434 38.000 0.000 NA   NA
 903977 903978 SPA1122 SPA1123 purU ychJ TRUE 0.672 51.000 0.200 NA   NA
 903979 903980 SPA1124 SPA1125 ychK hnr FALSE 0.243 91.000 0.048 1.000   NA
 903980 903981 SPA1125 SPA1126 hnr galU FALSE 0.144 203.000 0.235 1.000 N NA
 903985 903986 SPA1130 SPA1131 ychE oppA FALSE 0.002 660.000 0.000 NA N NA
 903986 903987 SPA1131 SPA1132 oppA oppB TRUE 0.840 122.000 0.151 0.060 Y NA
 903987 903988 SPA1132 SPA1133 oppB oppC TRUE 0.997 15.000 0.870 0.060 Y NA
 903988 903989 SPA1133 SPA1134 oppC oppD TRUE 0.994 12.000 0.554 1.000 Y NA
 903989 903990 SPA1134 SPA1135 oppD oppF TRUE 0.998 -3.000 0.420 0.002 Y NA
 903990 903991 SPA1135 SPA1136 oppF   TRUE 0.785 48.000 0.042 1.000 Y NA
 903992 903993 SPA1137 SPA1138 yciU cls TRUE 0.798 34.000 0.231 NA   NA
 903993 903994 SPA1138 SPA1139 cls yciI FALSE 0.009 360.000 0.000 NA   NA
 903996 903997 SPA1141 SPA1142 yciA ispZ FALSE 0.185 161.000 0.167 NA N NA
 903997 903998 SPA1142 SPA1143 ispZ yciC FALSE 0.366 57.000 0.061 NA   NA
 903998 903999 SPA1143 SPA1144 yciC   TRUE 0.796 26.000 0.169 NA   NA
 904001 904002 SPA1146 SPA1147   yciE TRUE 0.936 20.000 0.115 0.002   NA
 904002 904003 SPA1147 SPA1148 yciE yciF TRUE 0.755 74.000 0.115 0.002   NA
 904003 904004 SPA1148 SPA1149 yciF yciG FALSE 0.231 90.000 0.000 NA   NA
 904004 904005 SPA1149 SPA1150 yciG trpA FALSE 0.005 480.000 0.000 NA   NA
 904005 904006 SPA1150 SPA1151 trpA trpB TRUE 0.999 0.000 0.947 0.001 Y NA
 904006 904007 SPA1151 SPA1152 trpB trpC TRUE 0.996 10.000 0.221 0.001 Y NA
 904007 904008 SPA1152 SPA1153 trpC trpD TRUE 0.994 4.000 0.293 1.000 Y NA
 904008 904009 SPA1153 SPA1154 trpD trpE TRUE 0.994 0.000 0.010 0.001 Y NA
 904010 904011 SPA1155 SPA1156 trpH yciO TRUE 0.972 8.000 0.281 NA   NA
 904011 904012 SPA1156 SPA1157 yciO yciL TRUE 0.686 101.000 0.075 NA Y NA
 904013 904014 SPA1158 SPA1159 btuR yciK TRUE 0.810 -3.000 0.050 1.000 N NA
 904017 904018 SPA1162 SPA1163 topA cysB FALSE 0.001 411.000 0.008 1.000 N NA
 904018 904019 SPA1163 SPA1164 cysB acnA FALSE 0.002 977.000 0.000 1.000 N NA
 904021 904022 SPA1166 SPA1167 pgpB yciS FALSE 0.273 150.000 0.143 NA   NA
 904022 904023 SPA1167 SPA1168 yciS yciM TRUE 0.987 7.000 0.576 NA   NA
 904023 904024 SPA1168 SPA1169 yciM pyrF FALSE 0.096 191.000 0.125 1.000 N NA
 904024 904025 SPA1169 SPA1170 pyrF yciH TRUE 0.814 0.000 0.045 1.000 N NA
 904026 904027 SPA1171 SPA1172 osmB yciT FALSE 0.020 259.000 0.000 NA   NA
 904027 904028 SPA1172 SPA1173 yciT   FALSE 0.461 87.000 0.146 NA   NA
 904028 904029 SPA1173 SPA1174   yciR FALSE 0.294 113.000 0.083 NA   NA
 904029 904030 SPA1174 SPA1175 yciR rnb FALSE 0.011 262.000 0.000 1.000 N NA
 904030 904031 SPA1175 SPA1176 rnb yciW FALSE 0.381 89.000 0.105 NA   NA
 904031 904032 SPA1176 SPA1177 yciW fabI FALSE 0.052 200.000 0.057 NA   NA
 10702294 904033 SPA1178 SPA1179     FALSE 0.005 467.000 0.000 NA   NA
 904034 904035 SPA1180 SPA1181 sapF sapD TRUE 0.999 2.000 0.684 0.016 Y NA
 904035 904036 SPA1181 SPA1182 sapD sapC TRUE 0.998 0.000 0.667 1.000 Y NA
 10702295 904038 SPA1184 SPA1186     FALSE 0.065 185.000 0.000 NA   NA
 904039 904040 SPA1187 SPA1188     FALSE 0.004 591.000 0.000 NA   NA
 904040 10702296 SPA1188 SPA1189     FALSE 0.009 360.000 0.000 NA   NA
 10702296 904041 SPA1189 SPA1190     FALSE 0.390 44.000 0.000 NA   NA
 904042 904043 SPA1191 SPA1192 sapB sapA TRUE 0.985 -3.000 0.264 0.060 N NA
 904043 904044 SPA1192 SPA1193 sapA pspF TRUE 0.627 112.000 0.402 1.000 N NA
 904045 904046 SPA1194 SPA1195 pspA pspB TRUE 0.872 60.000 0.739 NA   NA
 904046 904047 SPA1195 SPA1196 pspB pspC TRUE 0.994 0.000 0.913 NA   NA
 904047 904048 SPA1196 SPA1197 pspC pspD TRUE 0.817 23.000 0.167 NA   NA
 904048 904049 SPA1197 SPA1198 pspD pspE TRUE 0.471 76.000 0.133 NA   NA
 904049 904050 SPA1198 SPA1199 pspE ycjX FALSE 0.074 149.000 0.013 NA   NA
 904050 904051 SPA1199 SPA1200 ycjX ycjF TRUE 0.992 -3.000 0.791 NA   NA
 904051 904052 SPA1200 SPA1201 ycjF tyrR FALSE 0.278 148.000 0.137 NA   NA
 904057 904058 SPA1207 SPA1208     FALSE 0.019 276.000 0.000 1.000   NA
 904060 904061 SPA1210 SPA1211     FALSE 0.169 129.000 0.000 NA   NA
 10702298 904062 SPA1212 SPA1213     FALSE 0.048 199.000 0.000 NA   NA
 904063 10702299 SPA1214 SPA1215     FALSE 0.259 75.000 0.000 NA   NA
 10702299 904064 SPA1215 SPA1216     TRUE 0.535 27.000 0.000 NA   NA
 904064 904065 SPA1216 SPA1217     FALSE 0.221 99.000 0.000 NA   NA
 904066 904067 SPA1218 SPA1219     TRUE 0.522 28.000 0.000 NA   NA
 904071 904072 SPA1223 SPA1224 ydaA fnr TRUE 0.852 151.000 0.619 1.000 Y NA
 904072 904073 SPA1224 SPA1225 fnr ogt FALSE 0.030 196.000 0.000 1.000 N NA
 904074 10702300 SPA1226 SPA1227 ydaL   FALSE 0.007 411.000 0.000 NA   NA
 10702300 904075 SPA1227 SPA1228     FALSE 0.133 146.000 0.000 NA   NA
 904075 904076 SPA1228 SPA1229     FALSE 0.010 340.000 0.000 NA   NA
 904076 904077 SPA1229 SPA1230   dbpA FALSE 0.261 74.000 0.000 NA   NA
 904079 904080 SPA1232 SPA1233     FALSE 0.017 275.000 0.000 NA   NA
 904085 904086 SPA1238 SPA1239 hslJ ldhA FALSE 0.024 111.000 0.012 NA N NA
 904087 904088 SPA1240 SPA1241 ydbH ynbE TRUE 0.923 0.000 0.068 NA   NA
 904088 904089 SPA1241 SPA1242 ynbE ydbL TRUE 0.990 8.000 0.726 NA   NA
 904089 904090 SPA1242 SPA1243 ydbL   FALSE 0.149 140.000 0.000 NA   NA
 904092 904093 SPA1245 SPA1246 hrpA ydcF FALSE 0.294 64.000 0.000 NA   NA
 904093 904094 SPA1246 SPA1247 ydcF ydcG FALSE 0.033 220.000 0.000 NA   NA
 904094 904095 SPA1247 SPA1248 ydcG   FALSE 0.043 205.000 0.000 NA   NA
 904095 904096 SPA1248 SPA1249     TRUE 0.806 12.000 0.000 NA   NA
 904097 904098 SPA1250 SPA1251 aac sgcR TRUE 0.912 0.000 0.000 1.000   NA
 904098 904099 SPA1251 SPA1252 sgcR   TRUE 0.944 16.000 0.000 1.000 Y NA
 904099 904100 SPA1252 SPA1253   sgcA TRUE 0.966 12.000 0.000 1.000 Y NA
 904100 904101 SPA1253 SPA1254 sgcA sgcQ TRUE 0.673 132.000 0.500 1.000   NA
 904101 904102 SPA1254 SPA1255 sgcQ sgcC TRUE 0.971 14.000 0.500 1.000   NA
 904102 904103 SPA1255 SPA1256 sgcC   TRUE 0.993 11.000 0.148 0.011 Y NA
 904103 904104 SPA1256 SPA1257   leuB TRUE 0.988 -3.000 0.111 1.000 Y NA
 904107 904108 SPA1260 SPA1261 tehA tehB TRUE 0.928 -13.000 0.175 1.000   NA
 904108 904109 SPA1261 SPA1262 tehB   FALSE 0.171 156.000 0.088 NA   NA
 904111 10702302 SPA1265 SPA1266 yncJ   FALSE 0.017 274.000 0.000 NA   NA
 904112 904113 SPA1267 SPA1268 ugtL   TRUE 0.475 33.000 0.000 NA   NA
 904113 904114 SPA1268 SPA1269   pcgL FALSE 0.020 262.000 0.000 NA   NA
 904114 904115 SPA1269 SPA1270 pcgL ydcR FALSE 0.095 136.000 0.000 1.000 N NA
 904115 904116 SPA1270 SPA1271 ydcR ydcW FALSE 0.095 136.000 0.000 1.000 N NA
 904116 904117 SPA1271 SPA1272 ydcW ydcX FALSE 0.007 399.000 0.000 NA   NA
 904118 904119 SPA1273 SPA1274 srfC srfB TRUE 0.976 -3.000 0.278 NA   NA
 904119 904120 SPA1274 SPA1275 srfB srfA TRUE 0.958 5.000 0.167 NA   NA
 904122 904123 SPA1277 SPA1278 ydcZ yncA TRUE 0.926 0.000 0.070 NA   NA
 904124 904125 SPA1279 SPA1280 yncB yncC FALSE 0.012 334.000 0.000 1.000   NA
 904127 904128 SPA1282 SPA1283     FALSE 0.453 145.000 0.273 NA   NA
 904130 904131 SPA1285 SPA1286   nhoA FALSE 0.015 283.000 0.000 NA   NA
 904132 904133 SPA1287 SPA1288 yddE narV FALSE 0.241 106.000 0.000 1.000   NA
 904133 10702303 SPA1288 SPA1289 narV   TRUE 0.885 -3.000 0.000 NA   NA
 10702303 904134 SPA1289 SPA1290   narY TRUE 0.900 0.000 0.000 NA   NA
 904134 904135 SPA1290 SPA1291 narY narZ TRUE 0.999 -3.000 0.833 0.001 Y NA
 904135 904136 SPA1291 SPA1292 narZ narU TRUE 0.728 92.000 0.556 1.000 N NA
 904136 904137 SPA1292 SPA1293 narU   FALSE 0.042 214.000 0.000 1.000   NA
 904139 904140 SPA1295 SPA1296   nmpC FALSE 0.050 204.000 0.000 1.000   NA
 904140 904141 SPA1296 SPA1297 nmpC yddG FALSE 0.015 523.000 0.000 0.097   NA
 904142 904143 SPA1298 SPA1299 fdnG fdnH TRUE 0.996 14.000 0.429 0.002 Y NA
 904143 904144 SPA1299 SPA1300 fdnH fdnI TRUE 0.997 -7.000 0.333 0.002 Y NA
 904145 904146 SPA1301 SPA1302 adhP sfcA FALSE 0.015 302.000 0.000 1.000   NA
 904146 904147 SPA1302 SPA1303 sfcA rpsV TRUE 0.571 177.000 0.750 1.000   NA
 904147 904148 SPA1303 SPA1304 rpsV yddX TRUE 0.768 95.000 0.571 NA   NA
 904150 10702304 SPA1306 SPA1307 hlyE   FALSE 0.169 129.000 0.000 NA   NA
 904151 904152 SPA1308 SPA1309     FALSE 0.141 143.000 0.000 NA   NA
 904152 904153 SPA1309 SPA1310     FALSE 0.169 129.000 0.000 NA   NA
 904153 904154 SPA1310 SPA1311     TRUE 0.997 -3.000 0.263 0.004 Y NA
 904154 904155 SPA1311 SPA1312     TRUE 0.877 57.000 0.015 0.004 Y NA
 904156 10702305 SPA1313 SPA1314     TRUE 0.780 13.000 0.000 NA   NA
 10702305 904157 SPA1314 SPA1315     FALSE 0.003 1048.000 0.000 NA   NA
 904157 904158 SPA1315 SPA1316     FALSE 0.062 193.000 0.000 1.000   NA
 904159 904160 SPA1317 SPA1318 hyaA2 hyaB2 TRUE 0.999 3.000 0.611 0.002 Y NA
 904160 904161 SPA1318 SPA1319 hyaB2 hyaC2 TRUE 0.992 -49.000 0.355 0.054 Y NA
 904161 904162 SPA1319 SPA1320 hyaC2 hyaD2 TRUE 0.990 6.000 0.177 1.000 Y NA
 904162 10702306 SPA1320 SPA1321 hyaD2   TRUE 0.870 7.000 0.000 NA   NA
 10702306 904163 SPA1321 SPA1322   hyaE2 TRUE 0.885 -3.000 0.000 NA   NA
 904163 904164 SPA1322 SPA1323 hyaE2 hyaF2 TRUE 0.970 18.000 0.769 NA   NA
 904164 904165 SPA1323 SPA1324 hyaF2   TRUE 0.791 -12.000 0.000 NA   NA
 904165 904166 SPA1324 SPA1325     TRUE 0.780 13.000 0.000 NA   NA
 904169 904170 SPA1328 SPA1329   yneG FALSE 0.035 217.000 0.000 NA   NA
 904170 904171 SPA1329 SPA1330 yneG yneH TRUE 0.875 0.000 0.037 NA   NA
 904171 904172 SPA1330 SPA1331 yneH yneI FALSE 0.064 85.000 0.016 1.000 N NA
 904173 904174 SPA1332 SPA1333 yneJ ydeA FALSE 0.067 116.000 0.027 1.000 N NA
 904176 904177 SPA1335 SPA1336 marR marA TRUE 0.993 20.000 0.667 0.053 Y NA
 904177 904178 SPA1336 SPA1337 marA marB TRUE 0.512 29.000 0.000 NA   NA
 904178 904179 SPA1337 SPA1338 marB ydeE TRUE 0.848 -6.000 0.000 NA   NA
 904179 904180 SPA1338 SPA1339 ydeE   FALSE 0.048 221.000 0.077 NA   NA
 904183 904184 SPA1342 SPA1343   dcp FALSE 0.010 345.000 0.000 NA   NA
 904185 904186 SPA1344 SPA1345 ydfG ydfH FALSE 0.179 129.000 0.047 1.000   NA
 904186 904187 SPA1345 SPA1346 ydfH ydfZ FALSE 0.354 181.000 0.375 NA   NA
 904188 904189 SPA1347 SPA1348 ydfI ydfJ TRUE 0.752 144.000 0.250 1.000 Y NA
 904189 904190 SPA1348 SPA1349 ydfJ rspB TRUE 0.591 54.000 0.195 1.000 N NA
 904190 904191 SPA1349 SPA1350 rspB rspA TRUE 0.736 11.000 0.000 1.000 N NA
 904191 904192 SPA1350 SPA1351 rspA ynfA FALSE 0.203 122.000 0.000 1.000   NA
 904193 904194 SPA1352 SPA1353 ynfB speG FALSE 0.467 36.000 0.055 NA   NA
 904196 904197 SPA1355 SPA1356 ynfD   FALSE 0.405 157.000 0.304 NA   NA
 904197 904198 SPA1356 SPA1357   dmsB TRUE 0.992 11.000 0.154 0.054 Y NA
 904198 904199 SPA1357 SPA1358 dmsB   TRUE 0.908 2.000 0.000 1.000   NA
 904199 904200 SPA1358 SPA1359   ynfI FALSE 0.430 43.000 0.000 1.000   NA
 904200 904201 SPA1359 SPA1360 ynfI   FALSE 0.015 305.000 0.000 1.000   NA
 904201 904202 SPA1360 SPA1361     TRUE 0.931 29.000 0.403 0.058 N NA
 904202 904203 SPA1361 SPA1362     TRUE 0.983 10.000 0.313 0.058 N NA
 904203 904204 SPA1362 SPA1363     TRUE 0.999 0.000 0.903 0.097 Y NA
 904204 10702307 SPA1363 SPA1364     FALSE 0.155 136.000 0.000 NA   NA
 904205 904206 SPA1365 SPA1366 ynfK mlc TRUE 0.608 126.000 0.455 1.000 N NA
 904206 904207 SPA1366 SPA1367 mlc ynfL TRUE 0.856 128.000 0.408 1.000 Y NA
 904208 904209 SPA1368 SPA1369 ynfM asr FALSE 0.007 395.000 0.000 NA   NA
 904209 904210 SPA1369 SPA1370 asr   FALSE 0.018 269.000 0.000 NA   NA
 10702308 904211 SPA1371 SPA1372   ydgF TRUE 0.782 -13.000 0.000 NA   NA
 904211 904212 SPA1372 SPA1373 ydgF   FALSE 0.268 112.000 0.071 NA   NA
 904214 904215 SPA1375 SPA1376 pntB pntA TRUE 0.999 11.000 0.745 0.001 Y NA
 904216 904217 SPA1377 SPA1378 ydgH ydgI FALSE 0.036 299.000 0.143 NA   NA
 904220 904221 SPA1382 SPA1383 ompN   FALSE 0.125 154.000 0.000 1.000   NA
 904221 904222 SPA1383 SPA1384   rstB FALSE 0.240 108.000 0.000 1.000   NA
 904222 904223 SPA1384 SPA1385 rstB tus TRUE 0.584 76.000 0.200 1.000   NA
 904224 904225 SPA1386 SPA1387 fumC fumA TRUE 0.662 168.000 0.000 0.001 Y NA
 904226 904227 SPA1388 SPA1389 manA ydgA TRUE 0.818 103.000 0.778 NA   NA
 904227 10702310 SPA1389 SPA1390 ydgA   FALSE 0.004 706.000 0.000 NA   NA
 904229 904230 SPA1392 SPA1393 ydgT ydgK FALSE 0.413 89.000 0.120 NA   NA
 904230 904231 SPA1393 SPA1394 ydgK   TRUE 0.489 77.000 0.148 NA   NA
 904231 904232 SPA1394 SPA1395   ydgM TRUE 0.998 0.000 0.564 0.054 Y NA
 904232 904233 SPA1395 SPA1396 ydgM   TRUE 0.997 -7.000 0.537 0.019 Y NA
 904233 904234 SPA1396 SPA1397   ydgO TRUE 0.999 1.000 0.814 0.054 Y NA
 904234 904235 SPA1397 SPA1398 ydgO ydgP TRUE 0.999 4.000 0.924 0.054 Y NA
 904235 904236 SPA1398 SPA1399 ydgP ydgQ TRUE 0.999 3.000 0.908 0.054 Y NA
 904236 904237 SPA1399 SPA1400 ydgQ nth TRUE 0.932 0.000 0.109 1.000 N NA
 904237 904238 SPA1400 SPA1401 nth ydgR FALSE 0.003 602.000 0.000 1.000 N NA
 904238 904239 SPA1401 SPA1402 ydgR gst TRUE 0.603 105.000 0.344 1.000 N NA
 904240 904241 SPA1403 SPA1404 pdxY tyrS FALSE 0.160 60.000 0.041 1.000 N NA
 904241 904242 SPA1404 SPA1405 tyrS pdxH FALSE 0.113 127.000 0.054 1.000 N NA
 904242 904243 SPA1405 SPA1406 pdxH ydhA FALSE 0.250 59.000 0.034 NA   NA
 904243 904244 SPA1406 SPA1407 ydhA ydhH FALSE 0.185 88.000 0.034 NA   NA
 904247 904248 SPA1410 SPA1411 ydhI ydhJ TRUE 0.955 -33.000 0.412 NA   NA
 904248 904249 SPA1411 SPA1412 ydhJ   TRUE 0.945 0.000 0.088 1.000   NA
 904250 904251 SPA1413 SPA1414 sodC ydhF FALSE 0.221 80.000 0.033 1.000   NA
 904251 904252 SPA1414 SPA1415 ydhF ydhL FALSE 0.328 51.000 0.045 NA   NA
 904253 904254 SPA1416 SPA1417 ydhM nemA TRUE 0.724 59.000 0.362 1.000 N NA
 904254 904255 SPA1417 SPA1418 nemA gloA FALSE 0.201 69.000 0.057 1.000 N NA
 904255 904256 SPA1418 SPA1419 gloA rnt FALSE 0.352 101.000 0.136 1.000 N NA
 904258 904259 SPA1421 SPA1422 ydhO sodB FALSE 0.023 127.000 0.015 NA N NA
 904259 904260 SPA1422 SPA1423 sodB purR FALSE 0.003 468.000 0.000 1.000 N NA
 904262 904263 SPA1425 SPA1426 ydhC cfa FALSE 0.008 290.000 0.000 1.000 N NA
 904265 904266 SPA1428 SPA1429 ydhE   FALSE 0.116 152.000 0.000 NA   NA
 904266 904267 SPA1429 SPA1430     TRUE 0.761 14.000 0.000 NA   NA
 904268 904269 SPA1431 SPA1432 ssaU ssaT TRUE 0.997 -3.000 0.406 0.090 Y NA
 904269 904270 SPA1432 SPA1433 ssaT ssaS TRUE 0.998 1.000 0.516 0.090 Y NA
 904270 904271 SPA1433 SPA1434 ssaS yscR TRUE 0.994 -3.000 0.091 0.010 Y NA
 904271 904272 SPA1434 SPA1435 yscR ssaQ TRUE 0.832 68.000 0.154 1.000 Y NA
 904272 904273 SPA1435 SPA1436 ssaQ ssaP TRUE 0.897 -19.000 0.154 NA   NA
 904273 904274 SPA1436 SPA1437 ssaP ssaO TRUE 0.749 -19.000 0.000 NA   NA
 904274 904275 SPA1437 SPA1438 ssaO ssaN TRUE 0.891 3.000 0.000 NA   NA
 904275 904276 SPA1438 SPA1439 ssaN ssaV TRUE 0.998 -10.000 0.647 0.008 Y NA
 904276 904277 SPA1439 SPA1440 ssaV ssaM TRUE 0.978 -15.000 0.636 NA   NA
 904277 904278 SPA1440 SPA1441 ssaM ssaL TRUE 0.771 58.000 0.364 NA   NA
 904278 904279 SPA1441 SPA1442 ssaL ssaK TRUE 0.974 -10.000 0.462 NA   NA
 904279 904280 SPA1442 SPA1443 ssaK   TRUE 0.988 -3.000 0.538 NA   NA
 904280 904281 SPA1443 SPA1444   ssaJ TRUE 0.970 18.000 0.786 NA   NA
 904281 904282 SPA1444 SPA1445 ssaJ ssaI TRUE 0.994 -3.000 0.407 0.010   NA
 904282 904283 SPA1445 SPA1446 ssaI ssaH TRUE 0.971 12.000 0.407 NA   NA
 904283 904284 SPA1446 SPA1447 ssaH ssaG TRUE 0.903 41.000 0.650 NA   NA
 904284 904285 SPA1447 SPA1448 ssaG sseG FALSE 0.225 94.000 0.000 NA   NA
 904285 904286 SPA1448 SPA1449 sseG sseF TRUE 0.885 -3.000 0.000 NA   NA
 904286 904287 SPA1449 SPA1450 sseF sscB TRUE 0.714 16.000 0.000 NA   NA
 904287 904288 SPA1450 SPA1451 sscB sseE FALSE 0.318 58.000 0.000 NA   NA
 904288 904289 SPA1451 SPA1452 sseE sseD TRUE 0.891 3.000 0.000 NA   NA
 904289 904290 SPA1452 SPA1453 sseD sseC TRUE 0.909 16.000 0.211 NA   NA
 904290 904291 SPA1453 SPA1454 sseC sscA TRUE 0.991 3.000 0.632 1.000   NA
 904291 904292 SPA1454 SPA1455 sscA   TRUE 0.885 -3.000 0.000 NA   NA
 904292 904293 SPA1455 SPA1456     TRUE 0.989 7.000 0.667 NA   NA
 904293 904294 SPA1456 SPA1457   ssaE FALSE 0.088 263.000 0.250 NA   NA
 904294 904295 SPA1457 SPA1458 ssaE ssaD TRUE 0.947 8.000 0.146 NA   NA
 904295 904296 SPA1458 SPA1459 ssaD spiA TRUE 0.940 -19.000 0.268 NA   NA
 904296 904297 SPA1459 SPA1460 spiA spiC TRUE 0.959 2.000 0.143 NA   NA
 904298 904299 SPA1461 SPA1462 ssrA ssrB TRUE 0.939 31.000 0.000 0.014 Y NA
 904299 904300 SPA1462 SPA1463 ssrB   TRUE 0.503 179.000 0.000 0.064 Y NA
 904300 904301 SPA1463 SPA1464     FALSE 0.080 172.000 0.000 NA   NA
 904302 904303 SPA1465 SPA1466 ydhZ ttrR FALSE 0.221 98.000 0.000 NA   NA
 904303 904304 SPA1466 SPA1467 ttrR ttrS TRUE 0.991 -25.000 0.600 1.000 Y NA
 10702311 904305 SPA1468 SPA1469   ttrC TRUE 0.897 1.000 0.000 NA   NA
 904305 904306 SPA1469 SPA1470 ttrC ttrA TRUE 0.831 -7.000 0.000 NA   NA
 904306 10702312 SPA1470 SPA1471 ttrA   FALSE 0.011 323.000 0.000 NA   NA
 10702312 904307 SPA1471 SPA1472     TRUE 0.806 12.000 0.000 NA   NA
 904307 904308 SPA1472 SPA1473     TRUE 0.780 13.000 0.000 NA   NA
 904308 904309 SPA1473 SPA1474     TRUE 0.633 22.000 0.000 1.000   NA
 904309 904310 SPA1474 SPA1475   pykF FALSE 0.004 402.000 0.000 1.000 N NA
 904310 904311 SPA1475 SPA1476 pykF lppA FALSE 0.007 311.000 0.000 1.000 N NA
 904311 904312 SPA1476 SPA1477 lppA lppB TRUE 0.832 82.000 0.032 0.007 Y NA
 904312 904313 SPA1477 SPA1478 lppB lppB TRUE 0.836 78.000 0.032 0.007 Y NA
 904314 904315 SPA1479 SPA1480 ynhG ynhA FALSE 0.141 155.000 0.069 NA   NA
 904315 10702313 SPA1480 SPA1481 ynhA   TRUE 0.780 13.000 0.000 NA   NA
 10702313 904316 SPA1481 SPA1483   sufC FALSE 0.003 1243.000 0.000 NA   NA
 904316 904317 SPA1483 SPA1484 sufC sufB TRUE 0.986 17.000 0.466 1.000 Y NA
 904317 904318 SPA1484 SPA1485 sufB sufA TRUE 0.837 9.000 0.041 NA   NA
 904320 904321 SPA1487 SPA1488   ydiH FALSE 0.080 172.000 0.000 NA   NA
 904321 904322 SPA1488 SPA1489 ydiH   FALSE 0.242 60.000 0.032 NA   NA
 904322 904323 SPA1489 SPA1490   ydiJ FALSE 0.460 54.000 0.129 NA N NA
 904328 904329 SPA1495 SPA1496 ydiA aroH FALSE 0.282 156.000 0.165 1.000   NA
 904329 904330 SPA1496 SPA1497 aroH ydiE FALSE 0.054 157.000 0.054 NA N NA
 904331 904332 SPA1498 SPA1499 ydiU ydiV FALSE 0.233 62.000 0.031 NA   NA
 904332 904333 SPA1499 SPA1500 ydiV nlpC FALSE 0.005 314.000 0.000 NA N NA
 904333 904334 SPA1500 SPA1501 nlpC btuD FALSE 0.424 77.000 0.167 NA N NA
 904334 904335 SPA1501 SPA1502 btuD btuE TRUE 0.670 0.000 0.018 1.000 N NA
 904335 904336 SPA1502 SPA1503 btuE btuC FALSE 0.248 92.000 0.084 1.000 N NA
 904336 904337 SPA1503 SPA1504 btuC himA FALSE 0.012 203.000 0.023 1.000 N NA
 904337 904338 SPA1504 SPA1505 himA pheT TRUE 0.957 5.000 0.208 1.000 N NA
 904338 904339 SPA1505 SPA1506 pheT pheS TRUE 0.996 16.000 0.574 0.001 Y NA
 904339 904340 SPA1506 SPA1507 pheS rplT FALSE 0.173 302.000 0.202 1.000 Y NA
 904340 904341 SPA1507 SPA1508 rplT rpmI TRUE 0.986 51.000 0.928 0.014 Y NA
 904343 904344 SPA1510 SPA1511 infC thrS TRUE 0.991 4.000 0.186 1.000 Y NA
 904346 904347 SPA1513 SPA1514     FALSE 0.079 173.000 0.000 NA   NA
 904347 904348 SPA1514 SPA1515     TRUE 0.885 -3.000 0.000 NA   NA
 904351 904352 SPA1518 SPA1519 pfkB ydiZ FALSE 0.156 97.000 0.025 NA   NA
 904352 904353 SPA1519 SPA1520 ydiZ   FALSE 0.138 107.000 0.016 NA   NA
 904355 904356 SPA1522 SPA1523 yniC ydjM FALSE 0.156 150.000 0.068 NA   NA
 904356 904357 SPA1523 SPA1524 ydjM ydjN FALSE 0.264 137.000 0.102 NA   NA
 904360 904361 SPA1527 SPA1528 celG celF TRUE 0.986 13.000 0.429 0.019   NA
 904361 904362 SPA1528 SPA1529 celF celD TRUE 0.691 125.000 0.625 1.000 N NA
 904362 904363 SPA1529 SPA1530 celD celC TRUE 0.978 13.000 0.727 1.000 N NA
 904363 904364 SPA1530 SPA1531 celC celB TRUE 0.985 51.000 0.833 0.010 Y NA
 904364 904365 SPA1531 SPA1532 celB celA TRUE 0.908 83.000 0.167 0.010 Y NA
 904365 904366 SPA1532 SPA1533 celA osmE FALSE 0.015 301.000 0.000 1.000   NA
 904367 904368 SPA1534 SPA1535 nadE   FALSE 0.039 121.000 0.010 1.000 N NA
 904369 904370 SPA1536 SPA1537 spy astE FALSE 0.005 336.000 0.000 NA N NA
 904370 904371 SPA1537 SPA1538 astE astB TRUE 0.982 -7.000 0.126 1.000 Y NA
 904371 904372 SPA1538 SPA1539 astB astD TRUE 0.973 -3.000 0.306 1.000 N NA
 904372 904373 SPA1539 SPA1540 astD astA TRUE 0.953 -3.000 0.179 1.000 N NA
 904373 904374 SPA1540 SPA1541 astA astC TRUE 0.995 -9.000 0.625 1.000 Y NA
 904375 904376 SPA1542 SPA1543 xthA   FALSE 0.189 73.000 0.056 1.000 N NA
 904379 904380 SPA1546 SPA1547 topB selD TRUE 0.756 5.000 0.041 1.000 N NA
 904380 904381 SPA1547 SPA1548 selD ydjA FALSE 0.076 118.000 0.033 1.000 N NA
 904382 904383 SPA1549 SPA1550 sppA ansA FALSE 0.308 96.000 0.113 1.000 N NA
 904383 904384 SPA1550 SPA1551 ansA pncA FALSE 0.321 27.000 0.040 1.000 N NA
 904385 904386 SPA1552 SPA1553 yeaC yeaA TRUE 0.736 42.000 0.216 NA   NA
 904387 904388 SPA1554 SPA1555 gapA yeaD FALSE 0.121 329.000 0.154 1.000 Y NA
 904389 904390 SPA1556 SPA1557     FALSE 0.246 97.000 0.000 1.000   NA
 904390 904391 SPA1557 SPA1558   mipA FALSE 0.015 290.000 0.000 NA   NA
 10702314 904392 SPA1559 SPA1560   yeaH FALSE 0.181 123.000 0.000 NA   NA
 904392 904393 SPA1560 SPA1561 yeaH yeaJ FALSE 0.004 671.000 0.000 NA   NA
 904393 904394 SPA1561 SPA1562 yeaJ yeaK TRUE 0.533 41.000 0.083 NA   NA
 904398 904399 SPA1566 SPA1567 yeaN yeaO FALSE 0.108 119.000 0.007 NA   NA
 904400 904401 SPA1568 SPA1569   yaoF FALSE 0.298 69.000 0.057 NA   NA
 904401 904402 SPA1569 SPA1570 yaoF yeaQ FALSE 0.006 433.000 0.000 NA   NA
 904402 904403 SPA1570 SPA1571 yeaQ   TRUE 0.866 8.000 0.000 NA   NA
 904405 904406 SPA1573 SPA1574   yoaG FALSE 0.029 230.000 0.000 NA   NA
 904406 904407 SPA1574 SPA1575 yoaG yeaR TRUE 0.891 3.000 0.000 NA   NA
 904407 904408 SPA1575 SPA1576 yeaR yeaS FALSE 0.037 174.000 0.000 NA N NA
 904408 904409 SPA1576 SPA1577 yeaS aroQ FALSE 0.271 196.000 0.000 1.000 Y NA
 904410 904411 SPA1578 SPA1579     FALSE 0.251 79.000 0.000 NA   NA
 904412 904413 SPA1580 SPA1581     TRUE 0.558 69.000 0.000 0.063   NA
 904413 904414 SPA1581 SPA1582   aadA FALSE 0.152 145.000 0.000 1.000   NA
 904414 904415 SPA1582 SPA1583 aadA   FALSE 0.238 109.000 0.000 1.000   NA
 904415 904416 SPA1583 SPA1584     FALSE 0.207 112.000 0.000 NA   NA
 904416 904417 SPA1584 SPA1585     TRUE 0.861 9.000 0.000 NA   NA
 904419 904420 SPA1587 SPA1588     TRUE 0.957 -6.000 0.000 0.015   NA
 904420 904421 SPA1588 SPA1589     TRUE 0.865 -6.000 0.000 1.000   NA
 904421 904422 SPA1589 SPA1590     TRUE 0.982 -10.000 0.000 0.057 Y NA
 904422 904423 SPA1590 SPA1591     TRUE 0.998 -3.000 0.500 0.057 Y NA
 904424 904425 SPA1592 SPA1593     FALSE 0.125 149.000 0.000 NA   NA
 904427 904428 SPA1596 SPA1597     FALSE 0.021 255.000 0.000 NA   NA
 904429 904430 SPA1599 SPA1600 pagC   FALSE 0.008 378.000 0.000 NA   NA
 904430 904431 SPA1600 SPA1601     FALSE 0.240 86.000 0.000 NA   NA
 904432 904433 SPA1602 SPA1603 pagD cspH FALSE 0.164 132.000 0.000 NA   NA
 904433 904434 SPA1603 SPA1604 cspH envE FALSE 0.007 402.000 0.000 NA   NA
 904434 904435 SPA1604 SPA1605 envE msgA FALSE 0.069 181.000 0.000 NA   NA
 904435 904436 SPA1605 SPA1606 msgA cdtB FALSE 0.004 874.000 0.000 NA   NA
 904436 904437 SPA1606 SPA1607 cdtB   FALSE 0.263 73.000 0.000 NA   NA
 904438 904439 SPA1608 SPA1609     FALSE 0.055 192.000 0.000 NA   NA
 904439 904440 SPA1609 SPA1610     TRUE 0.911 17.000 0.000 0.007   NA
 904440 904441 SPA1610 SPA1611     FALSE 0.003 947.000 0.000 NA   NA
 904441 904442 SPA1611 SPA1612   icdA FALSE 0.006 459.000 0.000 NA   NA
 904443 904444 SPA1613 SPA1614 rluB   TRUE 0.885 -3.000 0.000 NA   NA
 904444 904445 SPA1614 SPA1615   ymfB TRUE 0.806 12.000 0.000 NA   NA
 904445 904446 SPA1615 SPA1616 ymfB trmU TRUE 0.535 54.000 0.158 1.000 N NA
 904446 904447 SPA1616 SPA1617 trmU ycfC TRUE 0.513 87.000 0.180 NA   NA
 904447 904448 SPA1617 SPA1618 ycfC purB TRUE 0.934 4.000 0.093 NA   NA
 904448 904449 SPA1618 SPA1619 purB phoP FALSE 0.039 124.000 0.011 1.000 N NA
 904449 904450 SPA1619 SPA1620 phoP phoQ TRUE 0.998 0.000 0.940 1.000 Y NA
 904450 904451 SPA1620 SPA1621 phoQ ycfD TRUE 0.727 81.000 0.408 NA   NA
 904452 904453 SPA1622 SPA1623   pepT TRUE 0.898 4.000 0.000 1.000   NA
 904454 904455 SPA1624 SPA1625 potA potB TRUE 0.994 -16.000 0.789 1.000 Y NA
 904455 904456 SPA1625 SPA1626 potB sifA FALSE 0.011 329.000 0.000 NA   NA
 904456 904457 SPA1626 SPA1627 sifA potC FALSE 0.012 316.000 0.000 NA   NA
 904457 904458 SPA1627 SPA1628 potC potD TRUE 0.933 25.000 0.007 0.057 Y NA
 904459 904460 SPA1629 SPA1630 cobB ycfX TRUE 0.960 17.000 0.119 1.000 Y NA
 904460 904461 SPA1630 SPA1631 ycfX ycfW TRUE 0.782 29.000 0.225 1.000 N NA
 904461 904462 SPA1631 SPA1632 ycfW ycfV TRUE 0.975 0.000 0.125 0.070 N NA
 904462 904463 SPA1632 SPA1633 ycfV ycfU TRUE 0.965 -7.000 0.175 0.070 N NA
 904464 904465 SPA1634 SPA1635 mfd ycfS FALSE 0.085 148.000 0.006 1.000   NA
 904466 904467 SPA1636 SPA1637 tnpA ycfR FALSE 0.039 211.000 0.000 NA   NA
 904469 904470 SPA1639 SPA1640 ycfJ ndh FALSE 0.085 191.000 0.071 1.000   NA
 904470 904471 SPA1640 SPA1641 ndh ycfP FALSE 0.019 278.000 0.057 NA   NA
 904471 904472 SPA1641 SPA1642 ycfP ycfO TRUE 0.697 25.000 0.091 NA   NA
 904472 904473 SPA1642 SPA1643 ycfO ycfN TRUE 0.554 23.000 0.069 1.000 N NA
 904473 904474 SPA1643 SPA1644 ycfN ycfM TRUE 0.947 -19.000 0.310 NA   NA
 904474 904475 SPA1644 SPA1645 ycfM ycfL TRUE 0.971 14.000 0.516 NA   NA
 904475 904476 SPA1645 SPA1646 ycfL ycfF TRUE 0.892 3.000 0.051 NA   NA
 904477 904478 SPA1648 SPA1649 ptsG ycfH FALSE 0.001 295.000 0.004 NA N NA
 904478 904479 SPA1649 SPA1650 ycfH holB TRUE 0.979 11.000 0.110 NA Y NA
 904479 904480 SPA1650 SPA1651 holB tmk TRUE 0.960 -3.000 0.211 1.000 N NA
 904480 904481 SPA1651 SPA1652 tmk yceG TRUE 0.941 -10.000 0.209 NA   NA
 904481 904482 SPA1652 SPA1653 yceG pabC TRUE 0.594 69.000 0.204 NA   NA
 904482 904483 SPA1653 SPA1654 pabC fabF FALSE 0.374 124.000 0.187 1.000 N NA
 904483 904484 SPA1654 SPA1655 fabF acpP TRUE 0.888 86.000 0.346 1.000 Y NA
 904484 904485 SPA1655 SPA1656 acpP fabG TRUE 0.868 156.000 0.321 0.004 Y NA
 904485 904486 SPA1656 SPA1657 fabG fabD TRUE 0.996 13.000 0.432 0.004 Y NA
 904486 904487 SPA1657 SPA1658 fabD fabH TRUE 0.989 16.000 0.182 0.004 Y NA
 904487 904488 SPA1658 SPA1659 fabH plsX TRUE 0.956 80.000 0.380 0.004 Y NA
 904488 904489 SPA1659 SPA1660 plsX rpmF TRUE 0.559 134.000 0.418 1.000 N NA
 904489 904490 SPA1660 SPA1661 rpmF yceD TRUE 0.864 52.000 0.599 NA   NA
 904490 904491 SPA1661 SPA1662 yceD   FALSE 0.442 37.000 0.000 NA   NA
 904493 904494 SPA1664 SPA1665 rluC   FALSE 0.030 190.000 0.005 NA   NA
 904496 904497 SPA1667 SPA1668 flgL flgK TRUE 0.990 15.000 0.142 0.001 Y NA
 904497 904498 SPA1668 SPA1669 flgK flgJ TRUE 0.981 65.000 0.705 0.002 Y NA
 904498 904499 SPA1669 SPA1670 flgJ flgI TRUE 0.993 0.000 0.036 0.007 Y NA
 904499 904500 SPA1670 SPA1671 flgI flgH TRUE 0.988 12.000 0.073 0.007 Y NA
 904500 904501 SPA1671 SPA1672 flgH flgG TRUE 0.959 55.000 0.268 0.005 Y NA
 904501 904502 SPA1672 SPA1673 flgG flgF TRUE 0.996 14.000 0.420 0.001 Y NA
 904502 904503 SPA1673 SPA1674 flgF flgE TRUE 0.992 21.000 0.476 0.004 Y NA
 904503 904504 SPA1674 SPA1675 flgE flgD TRUE 0.920 27.000 0.116 NA Y NA
 904504 904505 SPA1675 SPA1676 flgD flgC TRUE 0.983 12.000 0.186 NA Y NA
 904505 904506 SPA1676 SPA1677 flgC flgB TRUE 0.999 4.000 0.824 0.003 Y NA
 904507 904508 SPA1678 SPA1679 flgA flgM TRUE 0.867 92.000 0.330 NA Y NA
 904508 904509 SPA1679 SPA1680 flgM flgN TRUE 0.998 5.000 0.361 0.002 Y NA
 904510 904511 SPA1681 SPA1682 mviN mviM FALSE 0.015 265.000 0.022 1.000   NA
 904511 904512 SPA1682 SPA1683 mviM yceH TRUE 0.945 2.000 0.103 NA   NA
 904512 904513 SPA1683 SPA1684 yceH rimJ TRUE 0.647 36.000 0.116 NA   NA
 904514 904515 SPA1685 SPA1686 yceL grxB FALSE 0.370 64.000 0.103 1.000 N NA
 904515 10702318 SPA1686 SPA1687 grxB   FALSE 0.318 58.000 0.000 NA   NA
 10702318 904516 SPA1687 SPA1688   pyrC FALSE 0.219 104.000 0.000 NA   NA
 904516 904517 SPA1688 SPA1689 pyrC dinI FALSE 0.199 74.000 0.031 NA   NA
 904517 904518 SPA1689 SPA1690 dinI yceP FALSE 0.015 290.000 0.000 NA   NA
 904518 904519 SPA1690 SPA1691 yceP solA TRUE 0.681 113.000 0.423 NA   NA
 904519 904520 SPA1691 SPA1692 solA yceO TRUE 0.785 41.000 0.269 NA   NA
 904520 904521 SPA1692 SPA1693 yceO nanA FALSE 0.019 263.000 0.000 NA   NA
 904521 904522 SPA1693 SPA1694 nanA yceI TRUE 0.991 -3.000 0.676 NA   NA
 904524 904525 SPA1696 SPA1697 htrB yceE TRUE 0.761 155.000 0.857 0.087 N NA
 904525 904526 SPA1697 SPA1698 yceE msyB TRUE 0.681 82.000 0.333 NA   NA
 904527 904528 SPA1699 SPA1700 yceK mdoH TRUE 0.479 74.000 0.135 NA   NA
 904528 904529 SPA1700 SPA1701 mdoH mdoG TRUE 0.974 -7.000 0.469 1.000 N NA
 904531 904532 SPA1703 SPA1704 ymdC   TRUE 0.688 -64.000 0.046 NA   NA
 904532 904533 SPA1704 SPA1705   ymdA FALSE 0.170 89.000 0.028 NA   NA
 904533 904534 SPA1705 SPA1706 ymdA csgC TRUE 0.626 132.000 0.429 NA   NA
 904534 904535 SPA1706 SPA1707 csgC csgA TRUE 0.856 62.000 0.667 NA   NA
 904535 904536 SPA1707 SPA1708 csgA csgB TRUE 0.919 42.000 0.333 0.009   NA
 904537 904538 SPA1709 SPA1710 csgD csgE TRUE 0.961 5.000 0.176 NA   NA
 904538 10702319 SPA1710 SPA1711 csgE   TRUE 0.535 27.000 0.000 NA   NA
 10702319 904539 SPA1711 SPA1712   csgG TRUE 0.535 27.000 0.000 NA   NA
 904540 904541 SPA1713 SPA1714 ycdZ ycdY TRUE 0.589 53.000 0.145 NA   NA
 904541 904542 SPA1714 SPA1715 ycdY ycdX TRUE 0.922 24.000 0.417 1.000   NA
 904542 904543 SPA1715 SPA1716 ycdX ycdW TRUE 0.815 85.000 0.169 1.000 Y NA
 904545 904546 SPA1718 SPA1719 yjhC   TRUE 0.922 14.000 0.182 1.000   NA
 904546 904547 SPA1719 SPA1720     FALSE 0.051 283.000 0.000 0.056   NA
 904547 10702320 SPA1720 SPA1721     FALSE 0.378 46.000 0.000 NA   NA
 904548 904549 SPA1722 SPA1723     FALSE 0.006 337.000 0.000 1.000 N NA
 904549 904550 SPA1723 SPA1724     FALSE 0.009 286.000 0.000 1.000 N NA
 904551 904552 SPA1725 SPA1726 phoH putP FALSE 0.002 826.000 0.000 1.000 N NA
 904553 904554 SPA1727 SPA1728 putA   FALSE 0.456 59.000 0.094 NA   NA
 904555 904556 SPA1729 SPA1730 ycdC ymdF FALSE 0.111 136.000 0.028 NA   NA
 904557 904558 SPA1731 SPA1732 wrbA yccJ TRUE 0.899 21.000 0.290 NA   NA
 904559 904560 SPA1733 SPA1734 agp scsD FALSE 0.181 133.000 0.000 1.000   NA
 904560 904561 SPA1734 SPA1735 scsD scsC TRUE 0.996 -10.000 0.298 0.002 Y NA
 904561 10702321 SPA1735 SPA1736 scsC   TRUE 0.885 -3.000 0.000 NA   NA
 10702321 904562 SPA1736 SPA1737   scsA FALSE 0.361 49.000 0.000 NA   NA
 904563 904564 SPA1738 SPA1739 cbpA yccD TRUE 0.989 0.000 0.512 NA   NA
 904564 904565 SPA1739 SPA1740 yccD   FALSE 0.004 654.000 0.000 NA   NA
 904566 904567 SPA1741 SPA1742   hpaA TRUE 0.823 14.000 0.067 1.000   NA
 904567 904568 SPA1742 SPA1743 hpaA hpaX TRUE 0.953 10.000 0.233 1.000 N NA
 904568 904569 SPA1743 SPA1744 hpaX hpcH TRUE 0.835 73.000 0.175 1.000 Y NA
 904569 904570 SPA1744 SPA1745 hpcH hpcG TRUE 0.972 11.000 0.439 1.000 N NA
 904570 904571 SPA1745 SPA1746 hpcG hpcD FALSE 0.414 143.000 0.282 1.000 N NA
 904571 904572 SPA1746 SPA1747 hpcD hpcB TRUE 0.975 10.000 0.330 1.000   NA
 904572 904573 SPA1747 SPA1748 hpcB hpaE TRUE 0.986 2.000 0.378 1.000   NA
 904573 10702322 SPA1748 SPA1749 hpaE   TRUE 0.885 -3.000 0.000 NA   NA
 904574 904575 SPA1750 SPA1751 hpcR hpaB FALSE 0.024 473.000 0.000 0.001 N NA
 904575 904576 SPA1751 SPA1752 hpaB hpaC TRUE 0.970 18.000 0.226 0.001   NA
 904578 904579 SPA1754 SPA1755 copR copS TRUE 0.999 -7.000 0.857 0.001 Y NA
 904579 10702323 SPA1755 SPA1756 copS   FALSE 0.079 173.000 0.000 NA   NA
 10702323 904580 SPA1756 SPA1757     FALSE 0.214 109.000 0.000 NA   NA
 904582 904583 SPA1759 SPA1760 sigD sigE TRUE 0.936 17.000 0.333 NA   NA
 904585 904586 SPA1762 SPA1763 pipB pipA FALSE 0.032 223.000 0.000 NA   NA
 904588 904589 SPA1765 SPA1766 yccA yccK FALSE 0.181 87.000 0.018 1.000   NA
 904590 904591 SPA1767 SPA1768 yccX   FALSE 0.086 49.000 0.007 1.000 N NA
 904591 10702324 SPA1768 SPA1769     TRUE 0.548 26.000 0.000 NA   NA
 904592 904593 SPA1770 SPA1771 yccW yccV FALSE 0.465 58.000 0.094 NA   NA
 904595 904596 SPA1773 SPA1774 yccT mgsA FALSE 0.235 95.000 0.055 NA   NA
 904598 904599 SPA1776 SPA1777 yccF yccS TRUE 0.768 19.000 0.090 NA   NA
 904601 904602 SPA1779 SPA1780 sulA ompA FALSE 0.005 357.000 0.000 1.000 N NA
 904604 904605 SPA1782 SPA1783 lonH fabA TRUE 0.627 69.000 0.290 1.000 N NA
 904606 904607 SPA1784 SPA1785 rmf ymbA FALSE 0.021 256.000 0.000 NA   NA
 904607 904608 SPA1785 SPA1786 ymbA pqiB TRUE 0.988 -3.000 0.531 NA   NA
 904608 904609 SPA1786 SPA1787 pqiB pqiA TRUE 0.992 5.000 0.819 NA   NA
 904609 904610 SPA1787 SPA1788 pqiA uup TRUE 0.750 15.000 0.054 NA   NA
 904610 904611 SPA1788 SPA1789 uup ycbY TRUE 0.829 13.000 0.061 1.000   NA
 904613 904614 SPA1791 SPA1792 ycbW pyrD FALSE 0.131 166.000 0.081 NA   NA
 904614 904615 SPA1792 SPA1793 pyrD pepN FALSE 0.009 208.000 0.014 1.000 N NA
 904617 904618 SPA1795 SPA1796     FALSE 0.142 246.000 0.000 1.000 Y NA
 904619 904620 SPA1797 SPA1798   asnS FALSE 0.007 201.000 0.005 1.000 N NA
 904620 904621 SPA1798 SPA1799 asnS ompF FALSE 0.002 607.000 0.000 1.000 N NA
 904621 904622 SPA1799 SPA1800 ompF aspC FALSE 0.048 185.000 0.060 1.000 N NA
 904623 904624 SPA1801 SPA1802 ycbL ycbK TRUE 0.660 28.000 0.089 NA   NA
 904624 904625 SPA1802 SPA1803 ycbK ycbB FALSE 0.130 260.000 0.372 NA   NA
 904625 904626 SPA1803 SPA1804 ycbB mukB FALSE 0.011 345.000 0.000 1.000   NA
 904626 904627 SPA1804 SPA1805 mukB mukE TRUE 0.995 0.000 0.000 0.001 Y NA
 904627 904628 SPA1805 SPA1806 mukE mukF TRUE 0.973 8.000 0.036 NA Y NA
 904628 904629 SPA1806 SPA1807 mukF smtA TRUE 0.959 -7.000 0.325 NA N NA
 904631 904632 SPA1809 SPA1810   kdsB FALSE 0.025 211.000 0.023 NA   NA
 904632 904633 SPA1810 SPA1811 kdsB ycaR TRUE 0.975 -3.000 0.265 NA   NA
 904633 904634 SPA1811 SPA1812 ycaR ycaQ FALSE 0.234 52.000 0.016 NA   NA
 904634 904635 SPA1812 SPA1813 ycaQ lpxK FALSE 0.270 44.000 0.017 NA   NA
 904635 904636 SPA1813 SPA1814 lpxK msbA TRUE 0.959 -3.000 0.205 1.000 N NA
 904636 10702325 SPA1814 SPA1815 msbA   FALSE 0.442 37.000 0.000 NA   NA
 10702325 904637 SPA1815 SPA1816   himD FALSE 0.029 230.000 0.000 NA   NA
 904637 904638 SPA1816 SPA1817 himD rpsA FALSE 0.347 156.000 0.292 1.000 N NA
 904638 904639 SPA1817 SPA1818 rpsA cmk TRUE 0.519 114.000 0.281 1.000 N NA
 904639 904640 SPA1818 SPA1819 cmk ycaL FALSE 0.013 173.000 0.004 1.000 N NA
 904640 904641 SPA1819 SPA1820 ycaL aroA FALSE 0.024 143.000 0.003 1.000 N NA
 904641 904642 SPA1820 SPA1821 aroA serC TRUE 0.684 71.000 0.033 1.000 Y NA
 904642 904643 SPA1821 SPA1822 serC ycaP FALSE 0.036 186.000 0.014 NA   NA
 904644 904645 SPA1823 SPA1824 ycaO focA FALSE 0.007 405.000 0.000 NA   NA
 904645 904646 SPA1824 SPA1825 focA pflB TRUE 0.708 60.000 0.345 1.000 N NA
 904647 904648 SPA1827 SPA1828   pflA FALSE 0.190 119.000 0.000 NA   NA
 904649 904650 SPA1829 SPA1830 ycaM ycaD FALSE 0.020 218.000 0.000 1.000 N NA
 904650 904651 SPA1830 SPA1831 ycaD   FALSE 0.038 213.000 0.000 NA   NA
 904651 10702327 SPA1831 SPA1832     TRUE 0.504 30.000 0.000 NA   NA
 10702327 904652 SPA1832 SPA1833   dmsB TRUE 0.895 2.000 0.000 NA   NA
 904652 904653 SPA1833 SPA1834 dmsB dmsA TRUE 0.993 11.000 0.172 0.051 Y NA
 904653 904654 SPA1834 SPA1835 dmsA serS FALSE 0.016 236.000 0.000 1.000 N NA
 904654 904655 SPA1835 SPA1836 serS ycaJ FALSE 0.057 259.000 0.078 0.084 N NA
 904655 904656 SPA1836 SPA1837 ycaJ lolA TRUE 0.932 10.000 0.167 1.000 N NA
 904656 904657 SPA1837 SPA1838 lolA ftsK FALSE 0.382 152.000 0.305 1.000 N NA
 904657 904658 SPA1838 SPA1839 ftsK lrp TRUE 0.506 135.000 0.345 1.000 N NA
 904659 904660 SPA1840 SPA1841 trxB cydD FALSE 0.321 183.000 0.049 1.000 Y NA
 904660 904661 SPA1841 SPA1842 cydD cydC TRUE 0.999 1.000 0.631 0.006 Y NA
 904661 904662 SPA1842 SPA1843 cydC aat TRUE 0.806 45.000 0.049 1.000 Y NA
 904662 904663 SPA1843 SPA1844 aat   TRUE 0.897 1.000 0.000 NA   NA
 904663 904664 SPA1844 SPA1845   infA TRUE 0.706 -72.000 0.000 NA   NA
 904666 904667 SPA1847 SPA1848     TRUE 0.917 20.000 0.333 NA   NA
 904667 904668 SPA1848 SPA1849     FALSE 0.122 150.000 0.000 NA   NA
 904668 904669 SPA1849 SPA1850     FALSE 0.187 120.000 0.000 NA   NA
 904669 904670 SPA1850 SPA1851     FALSE 0.216 108.000 0.000 NA   NA
 904670 904671 SPA1851 SPA1852     FALSE 0.094 162.000 0.000 NA   NA
 904671 10702328 SPA1852 SPA1853     FALSE 0.053 195.000 0.000 NA   NA
 904672 904673 SPA1854 SPA1855 clpA yljA TRUE 0.922 31.000 0.596 NA   NA
 904675 904676 SPA1857 SPA1858 ybjZ ybjY TRUE 0.995 -3.000 0.789 0.092 N NA
 904679 904680 SPA1861 SPA1862 ybjE hcp FALSE 0.139 144.000 0.000 NA   NA
 904680 904681 SPA1862 SPA1863 hcp hcr TRUE 0.984 12.000 0.000 0.018 Y NA
 904681 904682 SPA1863 SPA1864 hcr poxB FALSE 0.030 158.000 0.025 1.000 N NA
 904682 904683 SPA1864 SPA1865 poxB ybjU TRUE 0.824 39.000 0.041 1.000 Y NA
 904683 904684 SPA1865 SPA1866 ybjU ybjT TRUE 0.822 11.000 0.074 1.000 N NA
 904684 904685 SPA1866 SPA1867 ybjT   TRUE 0.820 96.000 0.022 0.003 Y NA
 904686 904687 SPA1868 SPA1869 ybjR   TRUE 0.857 -3.000 0.037 NA   NA
 904688 904689 SPA1870 SPA1871 ybjP artP FALSE 0.046 229.000 0.081 NA   NA
 904689 904690 SPA1871 SPA1872 artP artI TRUE 0.979 18.000 0.323 1.000 Y NA
 904690 904691 SPA1872 SPA1873 artI artQ TRUE 0.996 7.000 0.260 0.055 Y NA
 904691 904692 SPA1873 SPA1874 artQ artM TRUE 0.999 0.000 0.714 0.015 Y NA
 904692 904693 SPA1874 SPA1875 artM artJ FALSE 0.386 237.000 0.143 0.055 Y NA
 904694 904695 SPA1876 SPA1877     TRUE 0.987 10.000 0.800 1.000 N NA
 904695 904696 SPA1877 SPA1878     TRUE 0.974 30.000 0.800 0.014   NA
 904696 904697 SPA1878 SPA1879     TRUE 0.861 9.000 0.000 NA   NA
 904697 904698 SPA1879 SPA1880   ybjF FALSE 0.255 77.000 0.000 NA   NA
 904698 904699 SPA1880 SPA1881 ybjF ybjO TRUE 0.744 43.000 0.226 NA   NA
 904699 904700 SPA1881 SPA1882 ybjO potI TRUE 0.644 74.000 0.264 NA   NA
 904700 904701 SPA1882 SPA1883 potI potH TRUE 0.998 -3.000 0.528 0.055 Y NA
 904701 904702 SPA1883 SPA1884 potH potG TRUE 0.997 10.000 0.857 1.000 Y NA
 904702 904703 SPA1884 SPA1885 potG potF TRUE 0.937 88.000 0.679 1.000 Y NA
 904703 904704 SPA1885 SPA1886 potF ybjN FALSE 0.009 349.000 0.000 NA   NA
 904704 904705 SPA1886 SPA1887 ybjN rimK FALSE 0.464 97.000 0.161 NA   NA
 904705 904706 SPA1887 SPA1888 rimK nfsA FALSE 0.422 58.000 0.114 1.000 N NA
 904706 904707 SPA1888 SPA1889 nfsA ybjC TRUE 0.906 -16.000 0.159 NA   NA
 904712 904713 SPA1894 SPA1895     TRUE 0.899 -3.000 0.000 1.000   NA
 904715 904716 SPA1897 SPA1898 ybjG deoR TRUE 0.641 72.000 0.235 1.000   NA
 904719 904720 SPA1901 SPA1902 yliI yliH FALSE 0.180 118.000 0.047 NA   NA
 904722 904723 SPA1904 SPA1905 yliD yliC TRUE 0.999 3.000 0.689 0.055 Y NA
 904723 904724 SPA1905 SPA1906 yliC yliB TRUE 0.978 61.000 0.803 0.055 Y NA
 904724 904725 SPA1906 SPA1907 yliB yliA TRUE 0.509 33.000 0.000 1.000   NA
 904725 904726 SPA1907 SPA1908 yliA ybiK TRUE 0.849 11.000 0.000 1.000   NA
 904727 904728 SPA1909 SPA1910 moeA moeB TRUE 0.987 24.000 0.323 0.003 Y NA
 904728 904729 SPA1910 SPA1911 moeB ybiY FALSE 0.010 278.000 0.000 1.000 N NA
 904729 904730 SPA1911 SPA1912 ybiY ybiW TRUE 0.990 6.000 0.316 0.002 N NA
 904735 904736 SPA1917 SPA1918 ybiR   TRUE 0.612 -3.000 0.014 1.000 N NA
 10702329 904739 SPA1921 SPA1922   dps FALSE 0.013 303.000 0.000 NA   NA
 904739 904740 SPA1922 SPA1923 dps glnH FALSE 0.003 477.000 0.000 1.000 N NA
 904740 904741 SPA1923 SPA1924 glnH glnP TRUE 0.667 146.000 0.000 0.068 Y NA
 904741 904742 SPA1924 SPA1925 glnP glnQ TRUE 0.978 -3.000 0.026 1.000 Y NA
 904742 904743 SPA1925 SPA1926 glnQ ybiO FALSE 0.086 119.000 0.039 1.000 N NA
 904745 904746 SPA1928 SPA1929 ybiI   FALSE 0.100 158.000 0.000 NA   NA
 904746 904747 SPA1929 SPA1930   ybiJ TRUE 0.782 -13.000 0.000 NA   NA
 904748 904749 SPA1931 SPA1932 ybiB dinG FALSE 0.300 30.000 0.041 1.000 N NA
 904749 904750 SPA1932 SPA1933 dinG rhlE FALSE 0.375 207.000 0.029 0.013 Y NA
 904751 904752 SPA1934 SPA1935 ybiH   TRUE 0.970 0.000 0.236 1.000 N NA
 904752 904753 SPA1935 SPA1936   ybhF TRUE 0.983 -7.000 0.545 1.000   NA
 904753 904754 SPA1936 SPA1937 ybhF ybhS TRUE 0.990 -7.000 0.547 0.084   NA
 904754 904755 SPA1937 SPA1938 ybhS ybhR TRUE 0.959 116.000 0.609 0.006 Y NA
 904757 904758 SPA1940 SPA1941 ybhP ybhO TRUE 0.885 -3.000 0.000 NA   NA
 904758 904759 SPA1941 SPA1942 ybhO ybhN TRUE 0.900 0.000 0.000 NA   NA
 904760 904761 SPA1943 SPA1944   ybhM FALSE 0.057 190.000 0.000 NA   NA
 904761 904762 SPA1944 SPA1945 ybhM ybhL FALSE 0.104 147.000 0.037 NA   NA
 904762 904763 SPA1945 SPA1946 ybhL moaE FALSE 0.274 48.000 0.025 NA   NA
 904763 904764 SPA1946 SPA1947 moaE moaD TRUE 0.999 2.000 0.501 0.003 Y NA
 904764 904765 SPA1947 SPA1948 moaD moaC TRUE 0.994 -7.000 0.175 0.003 Y NA
 904765 904766 SPA1948 SPA1949 moaC moaB TRUE 0.995 3.000 0.109 0.003 Y NA
 904766 904767 SPA1949 SPA1950 moaB moaA TRUE 0.976 22.000 0.108 0.003 Y NA
 10702330 904769 SPA1952 SPA1953     TRUE 0.866 8.000 0.000 NA   NA
 904769 904770 SPA1953 SPA1954   uvrB FALSE 0.012 308.000 0.000 NA   NA
 904770 904771 SPA1954 SPA1955 uvrB bioD FALSE 0.009 651.000 0.000 0.083 N NA
 904771 904772 SPA1955 SPA1956 bioD bioC TRUE 0.990 -7.000 0.054 0.002 Y NA
 904772 904773 SPA1956 SPA1957 bioC bioF TRUE 0.990 -16.000 0.133 0.002 Y NA
 904773 904774 SPA1957 SPA1958 bioF bioB TRUE 0.996 -3.000 0.168 0.002 Y NA
 904775 904776 SPA1959 SPA1960 bioA ybhB FALSE 0.190 58.000 0.003 NA   NA
 904777 10702331 SPA1961 SPA1962 hutH   TRUE 0.895 2.000 0.000 NA   NA
 10702331 904778 SPA1962 SPA1963   hutC FALSE 0.050 197.000 0.000 NA   NA
 904778 904779 SPA1963 SPA1964 hutC hutG FALSE 0.321 45.000 0.062 1.000 N NA
 904779 904780 SPA1964 SPA1965 hutG hutI TRUE 0.950 -3.000 0.171 1.000 N NA
 904784 904785 SPA1969 SPA1970 modC modB TRUE 0.999 3.000 0.537 0.001 Y NA
 904785 904786 SPA1970 SPA1971 modB modA TRUE 0.999 0.000 0.627 0.001 Y NA
 904786 904787 SPA1971 SPA1972 modA ybhT FALSE 0.117 167.000 0.072 NA   NA
 904788 904789 SPA1973 SPA1974 modE modF TRUE 0.549 68.000 0.000 0.083   NA
 904789 904790 SPA1974 SPA1975 modF   FALSE 0.081 171.000 0.000 NA   NA
 904790 904791 SPA1975 SPA1976   galE FALSE 0.032 223.000 0.000 NA   NA
 904791 904792 SPA1976 SPA1977 galE galT TRUE 0.957 11.000 0.053 0.001 N NA
 904792 904793 SPA1977 SPA1978 galT galK TRUE 0.994 3.000 0.370 0.001 N NA
 904793 904794 SPA1978 SPA1979 galK galM TRUE 0.993 -6.000 0.083 0.001 Y NA
 904794 904795 SPA1979 SPA1980 galM gpmA FALSE 0.147 224.000 0.009 1.000 Y NA
 904796 904797 SPA1981 SPA1982     TRUE 0.998 0.000 0.833 1.000 Y NA
 904797 904798 SPA1982 SPA1983   aroG FALSE 0.068 153.000 0.000 1.000 N NA
 904799 904800 SPA1984 SPA1985 ybgS ybgR FALSE 0.231 111.000 0.057 NA   NA
 904801 904802 SPA1986 SPA1987 pnuC nadA TRUE 0.878 25.000 0.023 1.000 Y NA
 904802 904803 SPA1987 SPA1988 nadA   FALSE 0.005 552.000 0.000 NA   NA
 904803 904804 SPA1988 SPA1989     FALSE 0.151 139.000 0.000 NA   NA
 904804 904805 SPA1989 SPA1990     FALSE 0.133 146.000 0.000 NA   NA
 904805 904806 SPA1990 SPA1991     TRUE 0.870 7.000 0.000 NA   NA
 904806 904807 SPA1991 SPA1992     FALSE 0.149 140.000 0.000 NA   NA
 904807 904808 SPA1992 SPA1993   ybgF FALSE 0.089 165.000 0.000 NA   NA
 904808 904809 SPA1993 SPA1994 ybgF pal TRUE 0.916 10.000 0.088 1.000   NA
 904809 904810 SPA1994 SPA1995 pal tolB TRUE 0.892 35.000 0.592 1.000 N NA
 904810 904811 SPA1995 SPA1996 tolB tolA FALSE 0.089 124.000 0.051 NA N NA
 904811 904812 SPA1996 SPA1997 tolA tolR FALSE 0.364 65.000 0.114 NA N NA
 904812 904813 SPA1997 SPA1998 tolR tolQ TRUE 0.998 4.000 0.556 0.067 Y NA
 904813 904814 SPA1998 SPA1999 tolQ ybgC TRUE 0.990 -3.000 0.593 1.000   NA
 904814 904815 SPA1999 SPA2000 ybgC ybgE FALSE 0.054 229.000 0.095 NA   NA
 904815 904816 SPA2000 SPA2001 ybgE ybgT FALSE 0.194 212.000 0.310 NA   NA
 904816 904817 SPA2001 SPA2002 ybgT cydB TRUE 0.888 15.000 0.149 NA   NA
 904817 904818 SPA2002 SPA2003 cydB cydA TRUE 0.972 16.000 0.000 0.051 Y NA
 904818 904819 SPA2003 SPA2004 cydA sucD FALSE 0.021 1586.000 0.000 1.000 Y NA
 904819 904820 SPA2004 SPA2005 sucD sucC TRUE 0.999 0.000 0.806 0.001 Y NA
 904820 904821 SPA2005 SPA2006 sucC sucB TRUE 0.665 142.000 0.136 1.000 Y NA
 904821 904822 SPA2006 SPA2007 sucB sucA TRUE 0.993 15.000 0.667 1.000 Y NA
 904822 904823 SPA2007 SPA2008 sucA sdhB FALSE 0.037 526.000 0.067 1.000 Y NA
 904823 904824 SPA2008 SPA2009 sdhB sdhA TRUE 0.997 14.000 0.604 0.003 Y NA
 904824 904825 SPA2009 SPA2010 sdhA sdhD TRUE 0.999 0.000 0.705 0.003 Y NA
 904825 904826 SPA2010 SPA2011 sdhD sdhC TRUE 0.998 -6.000 0.453 0.001 Y NA
 904826 904827 SPA2011 SPA2012 sdhC   FALSE 0.007 409.000 0.000 NA   NA
 904828 904829 SPA2013 SPA2014 gltA abrB FALSE 0.085 137.000 0.005 NA   NA
 904830 904831 SPA2015 SPA2016 nei   FALSE 0.361 49.000 0.000 NA   NA
 904831 904832 SPA2016 SPA2017     FALSE 0.280 68.000 0.000 NA   NA
 904832 904833 SPA2017 SPA2018     TRUE 0.885 4.000 0.000 NA   NA
 904833 904834 SPA2018 SPA2019     FALSE 0.054 193.000 0.000 NA   NA
 904834 904835 SPA2019 SPA2020     FALSE 0.225 94.000 0.000 NA   NA
 904835 904836 SPA2020 SPA2021     FALSE 0.024 903.000 0.000 1.000 Y NA
 904836 904837 SPA2021 SPA2022     FALSE 0.023 905.000 0.000 1.000 Y NA
 904837 904838 SPA2022 SPA2023     FALSE 0.020 259.000 0.000 NA   NA
 904838 10702332 SPA2023 SPA2024     TRUE 0.850 10.000 0.000 NA   NA
 10702332 904839 SPA2024 SPA2025     FALSE 0.006 460.000 0.000 NA   NA
 904839 904840 SPA2025 SPA2026     FALSE 0.307 60.000 0.000 NA   NA
 904840 904841 SPA2026 SPA2027   ybgL FALSE 0.011 323.000 0.000 NA   NA
 904841 904842 SPA2027 SPA2028 ybgL ybgK TRUE 0.943 -10.000 0.211 NA   NA
 904842 904843 SPA2028 SPA2029 ybgK ybgJ TRUE 0.993 -6.000 0.379 NA Y NA
 904843 904844 SPA2029 SPA2030 ybgJ ybgI TRUE 0.710 16.000 0.050 NA   NA
 904846 904847 SPA2032 SPA2033 phrB ybfA FALSE 0.118 111.000 0.004 NA   NA
 904848 904849 SPA2034 SPA2035   kdpA TRUE 0.982 0.000 0.000 0.001   NA
 904849 904850 SPA2035 SPA2036 kdpA kdpB TRUE 0.986 21.000 0.201 0.001 Y NA
 904850 904851 SPA2036 SPA2037 kdpB kdpC TRUE 0.999 6.000 0.877 0.001 Y NA
 904851 904852 SPA2037 SPA2038 kdpC kdpD TRUE 0.964 -3.000 0.100 0.090 N NA
 904852 904853 SPA2038 SPA2039 kdpD kdpE TRUE 0.995 -3.000 0.385 1.000 Y NA
 904853 904854 SPA2039 SPA2040 kdpE speF FALSE 0.002 763.000 0.000 1.000 N NA
 904854 904855 SPA2040 SPA2041 speF potE TRUE 0.986 -3.000 0.087 1.000 Y NA
 904855 904856 SPA2041 SPA2042 potE   FALSE 0.315 65.000 0.050 1.000   NA
 904857 904858 SPA2043 SPA2044 pgm seqA TRUE 0.731 25.000 0.151 1.000 N NA
 904859 904860 SPA2045 SPA2046 ybfF ybfE TRUE 0.501 134.000 0.276 NA   NA
 904860 904861 SPA2046 SPA2047 ybfE fldA TRUE 0.571 151.000 0.473 1.000   NA
 904861 904862 SPA2047 SPA2048 fldA fur FALSE 0.034 282.000 0.156 1.000 N NA
 904862 904863 SPA2048 SPA2049 fur   FALSE 0.308 115.000 0.020 0.060 N NA
 904863 904864 SPA2049 SPA2050     FALSE 0.144 98.000 0.053 1.000 N NA
 904864 904865 SPA2050 SPA2051     TRUE 0.978 -13.000 0.618 NA   NA
 904865 904866 SPA2051 SPA2052   citA FALSE 0.423 51.000 0.069 NA   NA
 904867 904868 SPA2053 SPA2054 ybfN ybfM FALSE 0.357 50.000 0.000 NA   NA
 904868 904869 SPA2054 SPA2055 ybfM glnS FALSE 0.005 661.000 0.000 1.000   NA
 904869 904870 SPA2055 SPA2056 glnS nagE FALSE 0.007 211.000 0.006 1.000 N NA
 904871 904872 SPA2057 SPA2058 nagB nagA TRUE 0.979 60.000 0.557 0.001 Y NA
 904872 904873 SPA2058 SPA2059 nagA nagC TRUE 0.997 5.000 0.571 1.000 Y NA
 904873 904874 SPA2059 SPA2060 nagC nagD TRUE 0.825 47.000 0.070 1.000 Y NA
 904874 10702333 SPA2060 SPA2061 nagD   FALSE 0.015 290.000 0.000 NA   NA
 10702333 904875 SPA2061 SPA2062   metU FALSE 0.032 222.000 0.000 NA   NA
 904875 904876 SPA2062 SPA2063 metU leuW TRUE 0.761 14.000 0.000 NA   NA
 904876 904877 SPA2063 SPA2064 leuW glnW TRUE 0.535 27.000 0.000 NA   NA
 904877 904878 SPA2064 SPA2065 glnW glnW FALSE 0.427 39.000 0.000 NA   NA
 904878 904879 SPA2065 SPA2066 glnW metU TRUE 0.649 19.000 0.000 NA   NA
 904879 904880 SPA2066 SPA2067 metU glnX FALSE 0.357 50.000 0.000 NA   NA
 904880 904881 SPA2067 SPA2068 glnX glnX FALSE 0.372 47.000 0.000 NA   NA
 904883 904884 SPA2070 SPA2071 miaB ybeZ FALSE 0.238 166.000 0.220 1.000 N NA
 904884 904885 SPA2071 SPA2072 ybeZ ybeY TRUE 0.986 -3.000 0.457 NA   NA
 904885 904886 SPA2072 SPA2073 ybeY ybeX FALSE 0.239 158.000 0.150 NA   NA
 904886 904887 SPA2073 SPA2074 ybeX lnt TRUE 0.939 20.000 0.557 1.000 N NA
 904887 904888 SPA2074 SPA2075 lnt ybeJ FALSE 0.006 337.000 0.000 1.000 N NA
 904888 904889 SPA2075 SPA2076 ybeJ gltJ TRUE 0.597 160.000 0.000 0.054 Y NA
 904889 904890 SPA2076 SPA2077 gltJ gltK TRUE 0.999 0.000 0.933 0.015 Y NA
 904890 904891 SPA2077 SPA2078 gltK gltL TRUE 0.996 0.000 0.379 1.000 Y NA
 904891 904892 SPA2078 SPA2079 gltL ybeK FALSE 0.386 117.000 0.195 NA N NA
 904892 904893 SPA2079 SPA2080 ybeK   TRUE 0.487 32.000 0.000 NA   NA
 904894 904895 SPA2081 SPA2082 ybeL   FALSE 0.250 93.000 0.000 1.000   NA
 904895 904896 SPA2082 SPA2083     FALSE 0.308 68.000 0.000 1.000   NA
 904896 904897 SPA2083 SPA2084     FALSE 0.389 50.000 0.000 1.000   NA
 904897 904898 SPA2084 SPA2085     TRUE 0.983 17.000 0.409 0.001   NA
 904899 904900 SPA2086 SPA2087 leuS rlpB TRUE 0.874 15.000 0.182 NA N NA
 904900 904901 SPA2087 SPA2088 rlpB holA TRUE 0.960 0.000 0.199 NA N NA
 904901 904902 SPA2088 SPA2089 holA ybeN TRUE 0.804 2.000 0.045 1.000 N NA
 904904 904905 SPA2091 SPA2092 cobC ybeB FALSE 0.011 328.000 0.000 NA   NA
 904905 904906 SPA2092 SPA2093 ybeB ybeA TRUE 0.979 4.000 0.307 NA   NA
 904906 904907 SPA2093 SPA2094 ybeA pbpA FALSE 0.412 31.000 0.031 NA   NA
 904907 904908 SPA2094 SPA2095 pbpA mrdB TRUE 0.804 3.000 0.046 1.000 N NA
 904908 904909 SPA2095 SPA2096 mrdB rlpA TRUE 0.554 11.000 0.035 NA N NA
 904909 904910 SPA2096 SPA2097 rlpA dacA TRUE 0.844 140.000 0.475 NA Y NA
 904910 904911 SPA2097 SPA2098 dacA ybeD FALSE 0.304 108.000 0.081 NA   NA
 904911 904912 SPA2098 SPA2099 ybeD lipB TRUE 0.545 100.000 0.219 NA   NA
 904912 904913 SPA2099 SPA2100 lipB ybeF FALSE 0.008 302.000 0.000 1.000 N NA
 904913 904914 SPA2100 SPA2101 ybeF lipA FALSE 0.007 206.000 0.005 1.000 N NA
 904915 904916 SPA2102 SPA2103 tatE ybeM FALSE 0.448 129.000 0.196 1.000   NA
 904918 904919 SPA2105 SPA2106 cspE pagP FALSE 0.308 188.000 0.333 1.000   NA
 904921 10702334 SPA2108 SPA2109 dpiA   TRUE 0.727 -31.000 0.000 NA   NA
 904922 904923 SPA2110 SPA2111 citC citD TRUE 0.981 -3.000 0.000 1.000 Y NA
 904923 904924 SPA2111 SPA2112 citD citE TRUE 0.995 -3.000 0.537 0.002 N NA
 904924 904925 SPA2112 SPA2113 citE citF TRUE 0.990 10.000 0.373 0.002 N NA
 904925 904926 SPA2113 SPA2114 citF citX FALSE 0.394 136.000 0.231 1.000 N NA
 904926 904927 SPA2114 SPA2115 citX citG TRUE 0.987 -28.000 0.400 1.000 Y NA
 904927 904928 SPA2115 SPA2116 citG citT FALSE 0.305 38.000 0.000 1.000 N NA
 904928 904929 SPA2116 SPA2117 citT rna FALSE 0.134 110.000 0.000 1.000 N NA
 904929 904930 SPA2117 SPA2118 rna rnk FALSE 0.006 235.000 0.018 1.000 N NA
 904932 904933 SPA2121 SPA2122     TRUE 0.995 0.000 1.000 1.000   NA
 904933 904934 SPA2122 SPA2123     TRUE 0.998 -3.000 0.444 0.050 Y NA
 904934 904935 SPA2123 SPA2124     TRUE 0.991 -7.000 0.556 0.050   NA
 904935 904936 SPA2124 SPA2125   ahpF FALSE 0.036 333.000 0.000 0.050   NA
 904936 904937 SPA2125 SPA2126 ahpF ahpC TRUE 0.490 242.000 0.551 1.000 Y NA
 904938 904939 SPA2127 SPA2128 dsbG ybdO FALSE 0.005 317.000 0.000 NA N NA
 904939 904940 SPA2128 SPA2129 ybdO ybdN FALSE 0.098 166.000 0.000 1.000   NA
 904940 904941 SPA2129 SPA2130 ybdN ybdM TRUE 0.951 -27.000 0.333 1.000   NA
 904944 904945 SPA2133 SPA2134 ybdD cstA TRUE 0.731 64.000 0.333 NA   NA
 904945 904946 SPA2134 SPA2135 cstA ybdB FALSE 0.183 182.000 0.222 NA N NA
 904946 904947 SPA2135 SPA2136 ybdB entA TRUE 0.983 3.000 0.065 NA Y NA
 904947 904948 SPA2136 SPA2137 entA entB TRUE 0.984 0.000 0.000 1.000 Y NA
 904948 904949 SPA2137 SPA2138 entB entE TRUE 0.956 14.000 0.000 1.000 Y NA
 904949 904950 SPA2138 SPA2139 entE entC TRUE 0.979 7.000 0.000 1.000 Y NA
 904953 904954 SPA2142 SPA2143 fepD fepG TRUE 0.997 0.000 0.300 0.054 Y NA
 904954 904955 SPA2143 SPA2144 fepG fepC TRUE 0.985 -3.000 0.077 1.000 Y NA
 904956 904957 SPA2145 SPA2146 fepE entF FALSE 0.013 250.000 0.000 1.000 N NA
 904957 904958 SPA2146 SPA2147 entF ybdZ TRUE 0.885 -3.000 0.000 NA   NA
 904958 904959 SPA2147 SPA2148 ybdZ fes TRUE 0.860 31.000 0.320 NA   NA
 904960 904961 SPA2149 SPA2150 fepA entD TRUE 0.878 47.000 0.700 1.000 N NA
 904961 904962 SPA2150 SPA2151 entD ybdK TRUE 0.826 12.000 0.000 1.000   NA
 904962 904963 SPA2151 SPA2152 ybdK ybdJ TRUE 0.888 67.000 1.000 NA   NA
 904965 904966 SPA2154 SPA2155   ybdF TRUE 0.973 0.000 0.208 NA   NA
 904966 904967 SPA2155 SPA2156 ybdF nfnB TRUE 0.798 97.000 0.667 NA   NA
 904972 904973 SPA2161 SPA2162 ykgB   TRUE 0.755 13.000 0.043 NA   NA
 904973 904974 SPA2162 SPA2163   ykgC TRUE 0.615 157.000 0.667 NA   NA
 904977 904978 SPA2166 SPA2167   gtrA FALSE 0.007 403.000 0.000 NA   NA
 904978 904979 SPA2167 SPA2168 gtrA gtrB TRUE 0.885 -3.000 0.000 NA   NA
 904979 10702336 SPA2168 SPA2169 gtrB   TRUE 0.749 -19.000 0.000 NA   NA
 10702336 904980 SPA2169 SPA2170     FALSE 0.007 386.000 0.000 NA   NA
 904980 10702337 SPA2170 SPA2171     FALSE 0.459 35.000 0.000 NA   NA
 904982 904983 SPA2173 SPA2174 fimW   FALSE 0.089 165.000 0.000 NA   NA
 904983 904984 SPA2174 SPA2175   fimY TRUE 0.649 19.000 0.000 NA   NA
 904984 904985 SPA2175 SPA2176 fimY fimZ FALSE 0.004 604.000 0.000 NA   NA
 904986 904987 SPA2177 SPA2178 fimF fimH TRUE 0.997 10.000 0.875 NA Y NA
 904987 904988 SPA2178 SPA2179 fimH fimD TRUE 0.994 15.000 0.875 NA Y NA
 904988 904989 SPA2179 SPA2180 fimD fimC TRUE 0.984 31.000 0.875 1.000 Y NA
 904989 904990 SPA2180 SPA2181 fimC fimI TRUE 0.970 44.000 0.714 1.000 Y NA
 904990 904991 SPA2181 SPA2182 fimI fimA TRUE 0.976 75.000 0.750 0.008 Y NA
 904992 904993 SPA2183 SPA2184 folD ybcJ TRUE 0.913 2.000 0.055 1.000   NA
 904993 904994 SPA2184 SPA2185 ybcJ ybcI FALSE 0.100 128.000 0.011 NA   NA
 904996 904997 SPA2187 SPA2188 ppiB ybbF TRUE 0.976 3.000 0.237 1.000   NA
 904997 904998 SPA2188 SPA2189 ybbF purE FALSE 0.143 118.000 0.016 1.000   NA
 904998 904999 SPA2189 SPA2190 purE purK TRUE 0.996 -3.000 0.136 0.001 Y NA
 905000 905001 SPA2191 SPA2192 arcC ylbF TRUE 0.983 4.000 0.375 NA   NA
 905001 905002 SPA2192 SPA2193 ylbF ylbE TRUE 0.955 12.000 0.265 NA   NA
 905002 10702338 SPA2193 SPA2194 ylbE   TRUE 0.850 10.000 0.000 NA   NA
 905003 905004 SPA2195 SPA2196 allD allC TRUE 0.792 22.000 0.174 1.000 N NA
 905004 905005 SPA2196 SPA2197 allC ylbA TRUE 0.850 11.000 0.059 NA   NA
 905006 905007 SPA2198 SPA2199 glxK ybbY TRUE 0.731 23.000 0.133 1.000 N NA
 905007 905008 SPA2199 SPA2200 ybbY allB TRUE 0.856 59.000 0.161 1.000 Y NA
 905008 10702339 SPA2200 SPA2201 allB   FALSE 0.251 79.000 0.000 NA   NA
 10702339 905009 SPA2201 SPA2202     FALSE 0.223 96.000 0.000 NA   NA
 905009 905010 SPA2202 SPA2203     FALSE 0.187 66.000 0.051 1.000 N NA
 905010 905011 SPA2203 SPA2204   hyi FALSE 0.380 100.000 0.154 1.000 N NA
 905011 905012 SPA2204 SPA2205 hyi gcl TRUE 0.834 13.000 0.065 1.000   NA
 905012 905013 SPA2205 SPA2206 gcl allR FALSE 0.277 85.000 0.054 1.000   NA
 905013 905014 SPA2206 SPA2207 allR allA TRUE 0.777 79.000 0.625 1.000 N NA
 905015 905016 SPA2208 SPA2209 ybbS ybbB FALSE 0.169 70.000 0.012 NA