MicrobesOnline Operon Predictions for Streptococcus pyogenes MGAS5005

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 922226 922227 M5005_Spy_0001 M5005_Spy_0002 dnaA dnaN TRUE 0.746 155.000 0.328 1.000 Y NA
 922227 922228 M5005_Spy_0002 M5005_Spy_0003 dnaN   FALSE 0.385 75.000 0.009 NA   NA
 922228 922229 M5005_Spy_0003 M5005_Spy_0004     FALSE 0.070 330.000 0.064 NA   NA
 922229 922230 M5005_Spy_0004 M5005_Spy_0005   pth TRUE 0.833 70.000 0.184 1.000 Y NA
 922230 922231 M5005_Spy_0005 M5005_Spy_0006 pth trcF TRUE 0.926 3.000 0.137 1.000 N NA
 922231 922232 M5005_Spy_0006 M5005_Spy_0007 trcF   FALSE 0.225 162.000 0.024 1.000 N NA
 922232 922233 M5005_Spy_0007 M5005_Spy_0008   divIC TRUE 0.930 -13.000 0.053 1.000 N NA
 922233 922234 M5005_Spy_0008 M5005_Spy_0009 divIC   TRUE 0.906 -3.000 0.011 NA   NA
 922234 922235 M5005_Spy_0009 M5005_Spy_0010     TRUE 0.904 13.000 0.132 NA   NA
 922235 922236 M5005_Spy_0010 M5005_Spy_0011   tilS TRUE 0.913 -3.000 0.014 1.000 N NA
 922236 922237 M5005_Spy_0011 M5005_Spy_0012 tilS   TRUE 0.971 5.000 0.067 0.065 N NA
 922237 922238 M5005_Spy_0012 M5005_Spy_0013   ftsH TRUE 0.898 22.000 0.192 1.000 N NA
 922238 922239 M5005_Spy_0013 M5005_Spy_0014 ftsH   FALSE 0.050 325.000 0.009 1.000 N NA
 922241 922242 M5005_Spy_R0001 M5005_Spy_T0001     FALSE 0.317 50.000 0.000 NA   NA
 922242 922243 M5005_Spy_T0001 M5005_Spy_R0002     FALSE 0.025 296.000 0.000 NA   NA
 922243 922244 M5005_Spy_R0002 M5005_Spy_R0003     FALSE 0.177 85.000 0.000 NA   NA
 922244 922245 M5005_Spy_R0003 M5005_Spy_T0002     TRUE 0.632 18.000 0.000 NA   NA
 922245 922246 M5005_Spy_T0002 M5005_Spy_T0003     TRUE 0.632 18.000 0.000 NA   NA
 922246 922247 M5005_Spy_T0003 M5005_Spy_T0004     TRUE 0.476 32.000 0.000 NA   NA
 922247 922248 M5005_Spy_T0004 M5005_Spy_T0005     TRUE 0.705 6.000 0.000 NA   NA
 922248 922249 M5005_Spy_T0005 M5005_Spy_T0006     TRUE 0.685 11.000 0.000 NA   NA
 922249 922250 M5005_Spy_T0006 M5005_Spy_T0007     TRUE 0.679 13.000 0.000 NA   NA
 922250 922251 M5005_Spy_T0007 M5005_Spy_T0008     TRUE 0.694 9.000 0.000 NA   NA
 922251 922252 M5005_Spy_T0008 M5005_Spy_T0009     TRUE 0.641 17.000 0.000 NA   NA
 922252 922253 M5005_Spy_T0009 M5005_Spy_T0010     TRUE 0.720 4.000 0.000 NA   NA
 922253 922254 M5005_Spy_T0010 M5005_Spy_R0004     FALSE 0.129 127.000 0.000 NA   NA
 922254 922255 M5005_Spy_R0004 M5005_Spy_T0011     FALSE 0.317 50.000 0.000 NA   NA
 922255 922256 M5005_Spy_T0011 M5005_Spy_R0005     FALSE 0.025 296.000 0.000 NA   NA
 922256 922257 M5005_Spy_R0005 M5005_Spy_R0006     FALSE 0.177 85.000 0.000 NA   NA
 922257 922258 M5005_Spy_R0006 M5005_Spy_T0012     TRUE 0.632 18.000 0.000 NA   NA
 922258 922259 M5005_Spy_T0012 M5005_Spy_T0013     TRUE 0.632 18.000 0.000 NA   NA
 922259 922260 M5005_Spy_T0013 M5005_Spy_T0014     TRUE 0.476 32.000 0.000 NA   NA
 922260 922261 M5005_Spy_T0014 M5005_Spy_T0015     TRUE 0.705 6.000 0.000 NA   NA
 922261 922262 M5005_Spy_T0015 M5005_Spy_T0016     TRUE 0.685 11.000 0.000 NA   NA
 922262 922263 M5005_Spy_T0016 M5005_Spy_T0017     TRUE 0.679 13.000 0.000 NA   NA
 922263 922264 M5005_Spy_T0017 M5005_Spy_T0018     TRUE 0.694 9.000 0.000 NA   NA
 922264 922265 M5005_Spy_T0018 M5005_Spy_T0019     TRUE 0.641 17.000 0.000 NA   NA
 922265 922266 M5005_Spy_T0019 M5005_Spy_T0020     TRUE 0.720 4.000 0.000 NA   NA
 922266 922267 M5005_Spy_T0020 M5005_Spy_T0021     TRUE 0.705 6.000 0.000 NA   NA
 922267 922268 M5005_Spy_T0021 M5005_Spy_T0022     TRUE 0.600 21.000 0.000 NA   NA
 922268 922269 M5005_Spy_T0022 M5005_Spy_T0023     TRUE 0.534 26.000 0.000 NA   NA
 922269 922270 M5005_Spy_T0023 M5005_Spy_T0024     TRUE 0.669 14.000 0.000 NA   NA
 922270 922271 M5005_Spy_T0024 M5005_Spy_T0025     TRUE 0.600 21.000 0.000 NA   NA
 922271 922272 M5005_Spy_T0025 M5005_Spy_T0026     TRUE 0.679 13.000 0.000 NA   NA
 922272 922273 M5005_Spy_T0026 M5005_Spy_T0027     FALSE 0.445 35.000 0.000 NA   NA
 922273 922274 M5005_Spy_T0027 M5005_Spy_T0028     TRUE 0.687 10.000 0.000 NA   NA
 922276 922277 M5005_Spy_0017 M5005_Spy_0018 sibA prsA.2 FALSE 0.125 253.000 0.107 NA   NA
 922277 922278 M5005_Spy_0018 M5005_Spy_0019 prsA.2 recO FALSE 0.066 186.000 0.000 1.000 N NA
 922278 922279 M5005_Spy_0019 M5005_Spy_0020 recO plsX FALSE 0.317 103.000 0.011 1.000 N NA
 922279 922280 M5005_Spy_0020 M5005_Spy_0021 plsX acpP.2 TRUE 0.995 -7.000 0.017 0.009 Y NA
 922280 922281 M5005_Spy_0021 M5005_Spy_0022 acpP.2   FALSE 0.305 121.000 0.017 1.000 N NA
 922281 922282 M5005_Spy_0022 M5005_Spy_0023     TRUE 0.731 76.000 0.043 1.000 Y NA
 922282 922283 M5005_Spy_0023 M5005_Spy_0024   purF TRUE 0.504 161.000 0.024 1.000 Y NA
 922283 922284 M5005_Spy_0024 M5005_Spy_0025 purF purM TRUE 0.959 28.000 0.248 1.000 Y NA
 922284 922285 M5005_Spy_0025 M5005_Spy_0026 purM purN TRUE 0.915 168.000 0.238 0.003 Y NA
 922285 922286 M5005_Spy_0026 M5005_Spy_0027 purN   TRUE 0.599 184.000 0.225 1.000 Y NA
 922288 922289 M5005_Spy_0029 M5005_Spy_0030 purD purE TRUE 0.523 158.000 0.044 1.000 Y NA
 922289 922290 M5005_Spy_0030 M5005_Spy_0031 purE purK TRUE 0.995 -16.000 0.002 0.002 Y NA
 922290 922291 M5005_Spy_0031 M5005_Spy_0032 purK   TRUE 0.523 27.000 0.000 NA   NA
 922291 922292 M5005_Spy_0032 M5005_Spy_0033   purB TRUE 0.632 18.000 0.000 NA   NA
 922292 922293 M5005_Spy_0033 M5005_Spy_0034 purB   FALSE 0.262 132.000 0.005 1.000   NA
 922293 922294 M5005_Spy_0034 M5005_Spy_0035   ruvB FALSE 0.094 226.000 0.002 1.000   NA
 922294 922295 M5005_Spy_0035 M5005_Spy_0036 ruvB   FALSE 0.233 138.000 0.005 1.000 N NA
 922295 922296 M5005_Spy_0036 M5005_Spy_0037     TRUE 0.797 23.000 0.019 NA   NA
 922296 922297 M5005_Spy_0037 M5005_Spy_0038     TRUE 0.977 -3.000 0.351 NA   NA
 922297 922298 M5005_Spy_0038 M5005_Spy_0039   adh2 FALSE 0.023 309.000 0.000 1.000 N NA
 922298 922299 M5005_Spy_0039 M5005_Spy_0040 adh2 adhA TRUE 0.482 252.000 0.012 0.002   NA
 922299 922300 M5005_Spy_0040 M5005_Spy_0041 adhA   FALSE 0.019 388.000 0.000 1.000   NA
 922300 922301 M5005_Spy_0041 M5005_Spy_0042     TRUE 0.976 5.000 0.000 0.002   NA
 922301 922302 M5005_Spy_0042 M5005_Spy_0043   rpsJ FALSE 0.068 201.000 0.000 1.000   NA
 922302 922303 M5005_Spy_0043 M5005_Spy_0044 rpsJ rplC TRUE 0.856 216.000 0.467 0.043 Y NA
 922303 922304 M5005_Spy_0044 M5005_Spy_0045 rplC rplD TRUE 0.995 24.000 0.544 0.033 Y NA
 922304 922305 M5005_Spy_0045 M5005_Spy_0046 rplD rplW TRUE 0.997 0.000 0.307 0.033 Y NA
 922305 922306 M5005_Spy_0046 M5005_Spy_0047 rplW rplB TRUE 0.998 18.000 0.849 0.038 Y NA
 922306 922307 M5005_Spy_0047 M5005_Spy_0048 rplB rpsS TRUE 0.973 139.000 0.820 0.043 Y NA
 922307 922308 M5005_Spy_0048 M5005_Spy_0049 rpsS rplV TRUE 0.998 16.000 0.769 0.043 Y NA
 922308 922309 M5005_Spy_0049 M5005_Spy_0050 rplV rpsC TRUE 0.998 13.000 0.719 0.043 Y NA
 922309 922310 M5005_Spy_0050 M5005_Spy_0051 rpsC rplP TRUE 0.999 4.000 0.828 0.043 Y NA
 922310 922311 M5005_Spy_0051 M5005_Spy_0052 rplP rpmC TRUE 0.998 10.000 0.802 0.033 Y NA
 922311 922312 M5005_Spy_0052 M5005_Spy_0053 rpmC rpsQ TRUE 0.997 26.000 0.828 0.033 Y NA
 922312 922313 M5005_Spy_0053 M5005_Spy_0054 rpsQ rplN TRUE 0.997 25.000 0.791 0.043 Y NA
 922313 922314 M5005_Spy_0054 M5005_Spy_0055 rplN rplX TRUE 0.984 79.000 0.810 0.043 Y NA
 922314 922315 M5005_Spy_0055 M5005_Spy_0056 rplX rplE TRUE 0.997 24.000 0.758 0.033 Y NA
 922315 922316 M5005_Spy_0056 M5005_Spy_0057 rplE rpsN TRUE 0.996 16.000 0.496 0.033 Y NA
 922316 922317 M5005_Spy_0057 M5005_Spy_0058 rpsN rpsH TRUE 0.941 151.000 0.473 0.033 Y NA
 922317 922318 M5005_Spy_0058 M5005_Spy_0059 rpsH rplF TRUE 0.942 203.000 0.808 0.033 Y NA
 922318 922319 M5005_Spy_0059 M5005_Spy_0060 rplF rplR TRUE 0.981 105.000 0.815 0.033 Y NA
 922319 922320 M5005_Spy_0060 M5005_Spy_0061 rplR rpsE TRUE 0.998 19.000 0.814 0.043 Y NA
 922320 922321 M5005_Spy_0061 M5005_Spy_0062 rpsE rpmD TRUE 0.998 15.000 0.789 0.043 Y NA
 922321 922322 M5005_Spy_0062 M5005_Spy_0063 rpmD rplO TRUE 0.938 214.000 0.653 0.005 Y NA
 922322 922323 M5005_Spy_0063 M5005_Spy_0064 rplO secY TRUE 0.980 17.000 0.730 1.000 N NA
 922323 922324 M5005_Spy_0064 M5005_Spy_0065 secY adk TRUE 0.482 150.000 0.241 1.000 N NA
 922324 922325 M5005_Spy_0065 M5005_Spy_0066 adk infA FALSE 0.353 118.000 0.059 1.000 N NA
 922325 922326 M5005_Spy_0066 M5005_Spy_0067 infA rpmJ TRUE 0.931 26.000 0.067 1.000 Y NA
 922326 922327 M5005_Spy_0067 M5005_Spy_0068 rpmJ rpsM TRUE 0.988 18.000 0.086 0.033 Y NA
 922327 922328 M5005_Spy_0068 M5005_Spy_0069 rpsM rpsK TRUE 0.998 18.000 0.810 0.033 Y NA
 922328 922329 M5005_Spy_0069 M5005_Spy_0070 rpsK rpoA TRUE 0.845 46.000 0.308 1.000 N NA
 922329 922330 M5005_Spy_0070 M5005_Spy_0071 rpoA rplQ TRUE 0.986 15.000 0.873 1.000 N NA
 922332 922333 M5005_Spy_R0007 M5005_Spy_T0029     FALSE 0.317 50.000 0.000 NA   NA
 922333 922334 M5005_Spy_T0029 M5005_Spy_R0008     FALSE 0.025 296.000 0.000 NA   NA
 922334 922335 M5005_Spy_R0008 M5005_Spy_R0009     FALSE 0.177 85.000 0.000 NA   NA
 922335 922336 M5005_Spy_R0009 M5005_Spy_T0030     TRUE 0.632 18.000 0.000 NA   NA
 922336 922337 M5005_Spy_T0030 M5005_Spy_T0031     TRUE 0.705 6.000 0.000 NA   NA
 922337 922338 M5005_Spy_T0031 M5005_Spy_T0032     FALSE 0.445 35.000 0.000 NA   NA
 922338 922339 M5005_Spy_T0032 M5005_Spy_T0033     TRUE 0.577 23.000 0.000 NA   NA
 922339 922340 M5005_Spy_T0033 M5005_Spy_T0034     TRUE 0.669 14.000 0.000 NA   NA
 922340 922341 M5005_Spy_T0034 M5005_Spy_T0035     TRUE 0.669 14.000 0.000 NA   NA
 922341 922342 M5005_Spy_T0035 M5005_Spy_T0036     TRUE 0.600 21.000 0.000 NA   NA
 922342 922343 M5005_Spy_T0036 M5005_Spy_T0037     TRUE 0.611 20.000 0.000 NA   NA
 922343 922344 M5005_Spy_T0037 M5005_Spy_T0038     TRUE 0.701 7.000 0.000 NA   NA
 922344 922345 M5005_Spy_T0038 M5005_Spy_T0039     TRUE 0.683 12.000 0.000 NA   NA
 922345 922346 M5005_Spy_T0039 M5005_Spy_T0040     TRUE 0.694 9.000 0.000 NA   NA
 922346 922347 M5005_Spy_T0040 M5005_Spy_T0041     TRUE 0.611 20.000 0.000 NA   NA
 922347 922348 M5005_Spy_T0041 M5005_Spy_0073     FALSE 0.032 260.000 0.000 NA   NA
 922348 922349 M5005_Spy_0073 M5005_Spy_0074     FALSE 0.011 638.000 0.000 NA   NA
 922349 922350 M5005_Spy_0074 M5005_Spy_0075     TRUE 0.982 11.000 0.009 0.002   NA
 922350 922351 M5005_Spy_0075 M5005_Spy_0076     TRUE 0.817 106.000 0.009 0.002   NA
 922351 922352 M5005_Spy_0076 M5005_Spy_0077   adcR FALSE 0.317 110.000 0.008 1.000   NA
 922352 922353 M5005_Spy_0077 M5005_Spy_0078 adcR adcC TRUE 0.941 4.000 0.192 1.000 N NA
 922353 922354 M5005_Spy_0078 M5005_Spy_0079 adcC adcB TRUE 0.996 -7.000 0.673 1.000 Y NA
 922355 922356 M5005_Spy_0080 M5005_Spy_0081   tyrS TRUE 0.489 51.000 0.004 1.000 N NA
 922357 922358 M5005_Spy_0082 M5005_Spy_0083 pbp1b rpoB FALSE 0.032 264.000 0.000 1.000 N NA
 922358 922359 M5005_Spy_0083 M5005_Spy_0084 rpoB rpoC TRUE 0.991 91.000 0.851 0.002 Y NA
 922359 922360 M5005_Spy_0084 M5005_Spy_0085 rpoC   FALSE 0.208 152.000 0.007 NA   NA
 922360 922361 M5005_Spy_0085 M5005_Spy_0086   comYA FALSE 0.422 93.000 0.083 NA   NA
 922361 922362 M5005_Spy_0086 M5005_Spy_0087 comYA comYB TRUE 0.995 -121.000 0.639 1.000 Y NA
 922362 922363 M5005_Spy_0087 M5005_Spy_0088 comYB comYC TRUE 0.999 2.000 0.861 0.002 Y NA
 922363 922364 M5005_Spy_0088 M5005_Spy_0089 comYC   TRUE 0.517 74.000 0.110 NA   NA
 922364 922365 M5005_Spy_0089 M5005_Spy_0090     TRUE 0.991 -43.000 0.786 NA   NA
 922365 922366 M5005_Spy_0090 M5005_Spy_0091   comYD TRUE 0.970 -7.000 0.250 NA   NA
 922366 922367 M5005_Spy_0091 M5005_Spy_0092 comYD   TRUE 0.966 -16.000 0.232 NA   NA
 922367 922368 M5005_Spy_0092 M5005_Spy_0093     FALSE 0.416 98.000 0.087 NA   NA
 922368 922369 M5005_Spy_0093 M5005_Spy_0094   ackA TRUE 0.614 59.000 0.130 1.000 N NA
 922369 922370 M5005_Spy_0094 M5005_Spy_0095 ackA   FALSE 0.064 187.000 0.000 NA   NA
 922371 922372 M5005_Spy_0096 M5005_Spy_0097 proC pepA TRUE 0.622 48.000 0.041 1.000 N NA
 922372 922373 M5005_Spy_0097 M5005_Spy_0098 pepA   FALSE 0.406 110.000 0.100 NA   NA
 922374 922375 M5005_Spy_0099 M5005_Spy_0100     TRUE 0.947 -3.000 0.140 NA   NA
 922375 922376 M5005_Spy_0100 M5005_Spy_0101     TRUE 0.935 18.000 0.239 1.000   NA
 922376 922377 M5005_Spy_0101 M5005_Spy_0102     FALSE 0.283 152.000 0.034 1.000   NA
 922378 922379 M5005_Spy_0103 M5005_Spy_0104     TRUE 0.779 20.000 0.005 1.000 N NA
 922379 922380 M5005_Spy_0104 M5005_Spy_0105     TRUE 0.926 -13.000 0.034 1.000 N NA
 922380 922381 M5005_Spy_0105 M5005_Spy_0106   rofA FALSE 0.208 147.000 0.003 NA   NA
 922382 922383 M5005_Spy_0107 M5005_Spy_0108     TRUE 0.933 -7.000 0.061 NA   NA
 922383 922384 M5005_Spy_0108 M5005_Spy_0109     TRUE 0.748 33.000 0.061 NA   NA
 922384 922385 M5005_Spy_0109 M5005_Spy_0110   eftLSL.B TRUE 0.687 10.000 0.000 NA   NA
 922385 922386 M5005_Spy_0110 M5005_Spy_0111 eftLSL.B   TRUE 0.972 22.000 0.667 NA   NA
 922387 922388 M5005_Spy_0112 M5005_Spy_0113     FALSE 0.164 241.000 0.000 NA Y NA
 922392 922393 M5005_Spy_0117 M5005_Spy_0118     FALSE 0.190 96.000 0.000 1.000   NA
 922394 922395 M5005_Spy_0119 M5005_Spy_0120   atoD.2 TRUE 0.965 12.000 0.100 1.000 Y NA
 922395 922396 M5005_Spy_0120 M5005_Spy_0121 atoD.2   TRUE 0.993 3.000 0.200 0.054 Y NA
 922398 922399 M5005_Spy_0123 M5005_Spy_0124   sloR TRUE 0.646 37.000 0.016 NA N NA
 922399 922400 M5005_Spy_0124 M5005_Spy_0125 sloR   FALSE 0.013 455.000 0.000 NA   NA
 922400 922401 M5005_Spy_0125 M5005_Spy_0126   ntpI TRUE 0.802 -10.000 0.000 NA   NA
 922401 922402 M5005_Spy_0126 M5005_Spy_0127 ntpI ntpK TRUE 0.998 2.000 0.848 0.004   NA
 922402 922403 M5005_Spy_0127 M5005_Spy_0128 ntpK ntpE TRUE 0.876 68.000 0.045 0.006   NA
 922403 922404 M5005_Spy_0128 M5005_Spy_0129 ntpE ntpC TRUE 0.981 16.000 0.097 0.006   NA
 922404 922405 M5005_Spy_0129 M5005_Spy_0130 ntpC ntpF TRUE 0.999 -3.000 0.487 0.002 Y NA
 922405 922406 M5005_Spy_0130 M5005_Spy_0131 ntpF ntpA TRUE 0.919 201.000 0.462 0.004 Y NA
 922406 922407 M5005_Spy_0131 M5005_Spy_0132 ntpA ntpB TRUE 0.999 1.000 0.776 0.004 Y NA
 922407 922408 M5005_Spy_0132 M5005_Spy_0133 ntpB ntpD TRUE 0.985 45.000 0.238 0.004 Y NA
 922409 922410 M5005_Spy_0134 M5005_Spy_0135     TRUE 0.986 13.000 0.818 NA   NA
 922411 922412 M5005_Spy_0136 M5005_Spy_0137 purA   FALSE 0.178 327.000 0.000 0.021   NA
 922412 922413 M5005_Spy_0137 M5005_Spy_0138   nusG FALSE 0.095 173.000 0.000 1.000   NA
 922413 922414 M5005_Spy_0138 M5005_Spy_0139 nusG nga FALSE 0.022 362.000 0.000 1.000   NA
 922414 922415 M5005_Spy_0139 M5005_Spy_0140 nga   TRUE 0.960 5.000 0.286 1.000   NA
 922415 922416 M5005_Spy_0140 M5005_Spy_0141   slo TRUE 0.862 24.000 0.125 1.000   NA
 922416 922417 M5005_Spy_0141 M5005_Spy_0142 slo   FALSE 0.033 255.000 0.000 NA   NA
 922418 922419 M5005_Spy_0143 M5005_Spy_0144     FALSE 0.015 410.000 0.000 NA   NA
 922419 922420 M5005_Spy_0144 M5005_Spy_0145     FALSE 0.076 175.000 0.000 NA   NA
 922421 922422 M5005_Spy_0146 M5005_Spy_0147 metB leuS FALSE 0.052 211.000 0.000 1.000 N NA
 922422 922423 M5005_Spy_0147 M5005_Spy_0148 leuS   FALSE 0.028 307.000 0.000 1.000   NA
 922423 922424 M5005_Spy_0148 M5005_Spy_0149     TRUE 0.941 71.000 0.431 0.023   NA
 922424 922425 M5005_Spy_0149 M5005_Spy_0150     TRUE 0.937 123.000 0.279 0.018 Y NA
 922425 922426 M5005_Spy_0150 M5005_Spy_0151     TRUE 0.844 91.000 0.328 1.000 Y NA
 922426 922427 M5005_Spy_0151 M5005_Spy_0152     TRUE 0.991 5.000 0.536 1.000 Y NA
 922427 922428 M5005_Spy_0152 M5005_Spy_0153   araD TRUE 0.995 2.000 0.700 1.000 Y NA
 922428 922429 M5005_Spy_0153 M5005_Spy_0154 araD   FALSE 0.269 58.000 0.000 NA   NA
 922429 922430 M5005_Spy_0154 M5005_Spy_0155     FALSE 0.134 121.000 0.000 NA   NA
 922430 922431 M5005_Spy_0155 M5005_Spy_0156     FALSE 0.204 253.000 0.231 NA   NA
 922431 922432 M5005_Spy_0156 M5005_Spy_0157   opuAA FALSE 0.013 488.000 0.000 NA   NA
 922432 922433 M5005_Spy_0157 M5005_Spy_0158 opuAA opuABC TRUE 0.989 16.000 0.177 0.088 Y NA
 922433 922434 M5005_Spy_0158 M5005_Spy_0159 opuABC polA FALSE 0.233 131.000 0.003 1.000 N NA
 922434 922435 M5005_Spy_0159 M5005_Spy_0160 polA   FALSE 0.128 187.000 0.005 NA   NA
 922435 922436 M5005_Spy_0160 M5005_Spy_0161   perR TRUE 0.513 52.000 0.010 NA   NA
 922436 922437 M5005_Spy_0161 M5005_Spy_0162 perR vlg FALSE 0.094 157.000 0.000 NA   NA
 922437 922438 M5005_Spy_0162 M5005_Spy_0163 vlg   FALSE 0.044 222.000 0.000 NA   NA
 922438 922439 M5005_Spy_0163 M5005_Spy_0164     TRUE 0.835 -7.000 0.000 1.000   NA
 922440 922441 M5005_Spy_0165 M5005_Spy_0166     FALSE 0.408 40.000 0.000 NA   NA
 922441 922442 M5005_Spy_0166 M5005_Spy_0167     TRUE 0.892 40.000 0.000 0.010   NA
 922442 922443 M5005_Spy_0167 M5005_Spy_0168     TRUE 0.853 33.000 0.000 0.079   NA
 922443 922444 M5005_Spy_0168 M5005_Spy_0169     FALSE 0.095 156.000 0.000 NA   NA
 922446 922447 M5005_Spy_0171 M5005_Spy_0172     TRUE 0.964 21.000 0.000 0.079 Y NA
 922447 922448 M5005_Spy_0172 M5005_Spy_0173     FALSE 0.174 86.000 0.000 NA   NA
 922449 922450 M5005_Spy_0174 M5005_Spy_0175   tgt TRUE 0.564 24.000 0.000 NA   NA
 922450 922451 M5005_Spy_0175 M5005_Spy_0176 tgt   FALSE 0.108 217.000 0.004 1.000   NA
 922451 922452 M5005_Spy_0176 M5005_Spy_0177     TRUE 0.889 4.000 0.039 NA   NA
 922452 922453 M5005_Spy_0177 M5005_Spy_0178     FALSE 0.291 140.000 0.033 NA   NA
 922453 922454 M5005_Spy_0178 M5005_Spy_0179     TRUE 0.982 0.000 0.013 0.021   NA
 922456 922457 M5005_Spy_0181 M5005_Spy_0182   speG FALSE 0.035 251.000 0.000 NA   NA
 922457 922458 M5005_Spy_0182 M5005_Spy_0183 speG   FALSE 0.177 85.000 0.000 NA   NA
 922458 922459 M5005_Spy_0183 M5005_Spy_0184     FALSE 0.433 36.000 0.000 NA   NA
 922459 922460 M5005_Spy_0184 M5005_Spy_0185   pgi FALSE 0.158 97.000 0.000 NA   NA
 922462 922463 M5005_Spy_0187 M5005_Spy_0188     TRUE 0.974 -97.000 0.000 0.016   NA
 922463 922464 M5005_Spy_0188 M5005_Spy_0189     TRUE 0.796 -16.000 0.000 NA   NA
 922464 922465 M5005_Spy_0189 M5005_Spy_0190     FALSE 0.187 81.000 0.000 NA   NA
 922465 922466 M5005_Spy_0190 M5005_Spy_0191     TRUE 0.514 28.000 0.000 NA   NA
 922467 922468 M5005_Spy_0192 M5005_Spy_0193 hasC.2   TRUE 0.697 33.000 0.007 1.000   NA
 922468 922469 M5005_Spy_0193 M5005_Spy_0194   gpsA TRUE 0.979 18.000 0.007 0.001   NA
 922470 922471 M5005_Spy_0195 M5005_Spy_0196     TRUE 0.939 -7.000 0.080 1.000 N NA
 922471 922472 M5005_Spy_0196 M5005_Spy_0197     TRUE 0.999 3.000 0.720 0.008 Y NA
 922472 922473 M5005_Spy_0197 M5005_Spy_0198     FALSE 0.283 118.000 0.010 NA   NA
 922473 922474 M5005_Spy_0198 M5005_Spy_0199     FALSE 0.269 110.000 0.005 NA   NA
 922474 922475 M5005_Spy_0199 M5005_Spy_0200   radA FALSE 0.412 81.000 0.028 1.000 N NA
 922475 922476 M5005_Spy_0200 M5005_Spy_0201 radA   FALSE 0.141 189.000 0.009 1.000 N NA
 922476 922477 M5005_Spy_0201 M5005_Spy_0202     TRUE 0.550 131.000 0.278 NA   NA
 922477 922478 M5005_Spy_0202 M5005_Spy_0203   gltX FALSE 0.149 182.000 0.008 NA   NA
 922478 922479 M5005_Spy_0203 M5005_Spy_0204 gltX fasB FALSE 0.016 395.000 0.000 1.000 N NA
 922479 922480 M5005_Spy_0204 M5005_Spy_0205 fasB fasC TRUE 0.996 -3.000 0.750 NA Y NA
 922480 922481 M5005_Spy_0205 M5005_Spy_0206 fasC fasA TRUE 0.992 4.000 0.571 NA Y NA
 922481 922482 M5005_Spy_0206 M5005_Spy_0207 fasA fasX FALSE 0.012 540.000 0.000 1.000 N NA
 922482 922483 M5005_Spy_0207 M5005_Spy_0208 fasX   TRUE 0.929 -16.000 0.052 1.000 N NA
 922483 922484 M5005_Spy_0208 M5005_Spy_0209     TRUE 0.907 12.000 0.106 1.000   NA
 922484 922485 M5005_Spy_0209 M5005_Spy_0210     FALSE 0.177 85.000 0.000 NA   NA
 922485 922486 M5005_Spy_0210 M5005_Spy_0211   rpmH FALSE 0.148 108.000 0.000 NA   NA
 922486 922487 M5005_Spy_0211 M5005_Spy_0212 rpmH   FALSE 0.036 274.000 0.000 1.000   NA
 922487 922488 M5005_Spy_0212 M5005_Spy_0213     TRUE 0.955 49.000 0.500 1.000 Y NA
 922488 922489 M5005_Spy_0213 M5005_Spy_0214     TRUE 0.894 103.000 0.133 0.042 Y NA
 922489 922490 M5005_Spy_0214 M5005_Spy_0215     TRUE 0.999 13.000 1.000 0.042 Y NA
 922490 922491 M5005_Spy_0215 M5005_Spy_0216     FALSE 0.094 157.000 0.000 NA   NA
 922491 922492 M5005_Spy_0216 M5005_Spy_0217   nanH TRUE 0.972 12.000 0.500 NA   NA
 922492 922493 M5005_Spy_0217 M5005_Spy_0218 nanH   TRUE 0.856 22.000 0.108 1.000 N NA
 922495 922496 M5005_Spy_0220 M5005_Spy_0221 tatD   TRUE 0.974 -28.000 0.058 NA Y NA
 922496 922497 M5005_Spy_0221 M5005_Spy_0222   ksgA FALSE 0.397 114.000 0.093 1.000 N NA
 922497 922498 M5005_Spy_0222 M5005_Spy_0223 ksgA   FALSE 0.032 424.000 0.003 1.000   NA
 922498 922499 M5005_Spy_0223 M5005_Spy_0224   rpe TRUE 0.943 10.000 0.213 1.000   NA
 922499 922500 M5005_Spy_0224 M5005_Spy_0225 rpe   TRUE 0.957 -7.000 0.166 1.000 N NA
 922500 922501 M5005_Spy_0225 M5005_Spy_0226     TRUE 0.896 2.000 0.030 NA   NA
 922501 922502 M5005_Spy_0226 M5005_Spy_0227   cbf TRUE 0.924 -10.000 0.030 NA   NA
 922502 922503 M5005_Spy_0227 M5005_Spy_0228 cbf purR FALSE 0.102 267.000 0.052 1.000   NA
 922503 922504 M5005_Spy_0228 M5005_Spy_0229 purR prgA TRUE 0.920 -9.000 0.017 NA   NA
 922504 922505 M5005_Spy_0229 M5005_Spy_0230 prgA rpsL FALSE 0.124 208.000 0.012 NA   NA
 922505 922506 M5005_Spy_0230 M5005_Spy_0231 rpsL rpsG TRUE 0.994 21.000 0.224 0.006 Y NA
 922506 922507 M5005_Spy_0231 M5005_Spy_0232 rpsG fus TRUE 0.482 367.000 0.579 1.000 Y NA
 922507 922508 M5005_Spy_0232 M5005_Spy_0233 fus plr FALSE 0.020 348.000 0.000 1.000 N NA
 922509 922510 M5005_Spy_0234 M5005_Spy_0235     FALSE 0.286 142.000 0.032 NA   NA
 922510 922511 M5005_Spy_0235 M5005_Spy_0236     TRUE 0.997 -7.000 0.758 1.000 Y NA
 922512 922513 M5005_Spy_0237 M5005_Spy_0238   bacA TRUE 0.561 66.000 0.118 NA   NA
 922513 922514 M5005_Spy_0238 M5005_Spy_0239 bacA mecA FALSE 0.339 146.000 0.132 NA N NA
 922514 922515 M5005_Spy_0239 M5005_Spy_0240 mecA   TRUE 0.470 151.000 0.267 NA N NA
 922515 922516 M5005_Spy_0240 M5005_Spy_0241   rgpG TRUE 0.785 -30.000 0.000 NA   NA
 922516 922517 M5005_Spy_0241 M5005_Spy_0242 rgpG   TRUE 0.523 27.000 0.000 NA   NA
 922517 922518 M5005_Spy_0242 M5005_Spy_0243     TRUE 0.731 95.000 0.139 1.000 Y NA
 922518 922519 M5005_Spy_0243 M5005_Spy_0244   nifS3 TRUE 0.953 31.000 0.606 1.000 N NA
 922519 922520 M5005_Spy_0244 M5005_Spy_0245 nifS3 nifU TRUE 0.973 -13.000 0.292 1.000 N NA
 922520 922521 M5005_Spy_0245 M5005_Spy_0246 nifU   TRUE 0.994 -7.000 0.152 0.002 N NA
 922522 922523 M5005_Spy_0247 M5005_Spy_0248   dacA2 TRUE 0.908 168.000 0.231 0.005 Y NA
 922524 922525 M5005_Spy_0249 M5005_Spy_0250 oppA oppB TRUE 0.970 53.000 0.273 0.042 Y NA
 922525 922526 M5005_Spy_0250 M5005_Spy_0251 oppB oppC TRUE 0.998 0.000 0.556 0.042 Y NA
 922526 922527 M5005_Spy_0251 M5005_Spy_0252 oppC oppD TRUE 0.992 9.000 0.650 1.000 Y NA
 922527 922528 M5005_Spy_0252 M5005_Spy_0253 oppD oppF TRUE 0.997 -7.000 0.095 0.001 Y NA
 922529 922530 M5005_Spy_0254 M5005_Spy_0255     FALSE 0.016 375.000 0.000 NA   NA
 922531 922532 M5005_Spy_R0010 M5005_Spy_T0042     FALSE 0.317 50.000 0.000 NA   NA
 922532 922533 M5005_Spy_T0042 M5005_Spy_R0011     FALSE 0.025 296.000 0.000 NA   NA
 922533 922534 M5005_Spy_R0011 M5005_Spy_R0012     FALSE 0.177 85.000 0.000 NA   NA
 922534 922535 M5005_Spy_R0012 M5005_Spy_T0043     TRUE 0.705 6.000 0.000 NA   NA
 922535 922536 M5005_Spy_T0043 M5005_Spy_T0044     FALSE 0.193 80.000 0.000 NA   NA
 922536 922537 M5005_Spy_T0044 M5005_Spy_0256   comX1.1 TRUE 0.534 26.000 0.000 NA   NA
 922537 922538 M5005_Spy_0256 M5005_Spy_0257 comX1.1   FALSE 0.014 611.000 0.000 1.000   NA
 922538 922539 M5005_Spy_0257 M5005_Spy_0258     TRUE 0.974 -97.000 0.000 0.016   NA
 922539 922540 M5005_Spy_0258 M5005_Spy_0259     TRUE 0.796 -16.000 0.000 NA   NA
 922540 922541 M5005_Spy_0259 M5005_Spy_0260     TRUE 0.632 18.000 0.000 NA   NA
 922541 922542 M5005_Spy_0260 M5005_Spy_0261     TRUE 0.985 0.000 0.555 1.000   NA
 922542 922543 M5005_Spy_0261 M5005_Spy_0262     TRUE 0.813 25.000 0.068 NA   NA
 922543 922544 M5005_Spy_0262 M5005_Spy_0263   nadD TRUE 0.563 69.000 0.150 NA N NA
 922544 922545 M5005_Spy_0263 M5005_Spy_0264 nadD   TRUE 0.986 -3.000 0.199 1.000 Y NA
 922545 922546 M5005_Spy_0264 M5005_Spy_0265     TRUE 0.941 0.000 0.149 NA   NA
 922546 922547 M5005_Spy_0265 M5005_Spy_0266     TRUE 0.714 42.000 0.085 NA   NA
 922547 922548 M5005_Spy_0266 M5005_Spy_0267     FALSE 0.120 254.000 0.094 NA   NA
 922548 922549 M5005_Spy_0267 M5005_Spy_0268     FALSE 0.020 337.000 0.000 NA   NA
 922549 922550 M5005_Spy_0268 M5005_Spy_0269     TRUE 0.802 -10.000 0.000 NA   NA
 922550 922551 M5005_Spy_0269 M5005_Spy_0270     FALSE 0.054 203.000 0.000 NA   NA
 922551 922552 M5005_Spy_0270 M5005_Spy_0271     FALSE 0.017 329.000 0.000 NA N NA
 922552 922553 M5005_Spy_0271 M5005_Spy_0272     FALSE 0.152 250.000 0.000 NA Y NA
 922553 922554 M5005_Spy_0272 M5005_Spy_0273     TRUE 0.997 1.000 0.938 1.000 Y NA
 922557 922558 M5005_Spy_0276 M5005_Spy_0277     TRUE 0.998 10.000 0.490 0.004 Y NA
 922558 922559 M5005_Spy_0277 M5005_Spy_0278   gidB FALSE 0.393 70.000 0.006 1.000 N NA
 922560 922561 M5005_Spy_0279 M5005_Spy_0280 lemA   TRUE 0.789 47.000 0.222 NA   NA
 922561 922562 M5005_Spy_0280 M5005_Spy_0281     FALSE 0.079 234.000 0.002 NA   NA
 922562 922563 M5005_Spy_0281 M5005_Spy_0282   covR FALSE 0.076 267.000 0.014 NA   NA
 922563 922564 M5005_Spy_0282 M5005_Spy_0283 covR covS TRUE 0.929 143.000 0.438 0.085 Y NA
 922564 922565 M5005_Spy_0283 M5005_Spy_0284 covS   FALSE 0.093 215.000 0.007 NA N NA
 922565 922566 M5005_Spy_0284 M5005_Spy_0285   dnaB TRUE 0.936 -16.000 0.109 NA N NA
 922566 922567 M5005_Spy_0285 M5005_Spy_0286 dnaB dnaI TRUE 0.996 1.000 0.817 NA Y NA
 922567 922568 M5005_Spy_0286 M5005_Spy_0287 dnaI pgdA TRUE 0.475 63.000 0.008 1.000   NA
 922568 922569 M5005_Spy_0287 M5005_Spy_0288 pgdA snf FALSE 0.120 207.000 0.004 1.000   NA
 922569 922570 M5005_Spy_0288 M5005_Spy_0289 snf   FALSE 0.164 243.000 0.151 NA   NA
 922570 922571 M5005_Spy_0289 M5005_Spy_0290   murC TRUE 0.644 40.000 0.013 NA   NA
 922571 922572 M5005_Spy_0290 M5005_Spy_0291 murC   TRUE 0.634 46.000 0.014 1.000   NA
 922572 922573 M5005_Spy_0291 M5005_Spy_0292     FALSE 0.404 118.000 0.120 NA   NA
 922573 922574 M5005_Spy_0292 M5005_Spy_0293   greA TRUE 0.818 25.000 0.079 NA   NA
 922575 922576 M5005_Spy_0294 M5005_Spy_0295     FALSE 0.030 265.000 0.000 NA   NA
 922576 922577 M5005_Spy_0295 M5005_Spy_0296     TRUE 0.537 82.000 0.154 1.000 N NA
 922577 922578 M5005_Spy_0296 M5005_Spy_0297     FALSE 0.118 155.000 0.000 1.000   NA
 922578 922579 M5005_Spy_0297 M5005_Spy_0298     TRUE 0.974 -97.000 0.000 0.016   NA
 922580 922581 M5005_Spy_0299 M5005_Spy_0300     TRUE 0.717 39.000 0.043 1.000   NA
 922581 922582 M5005_Spy_0300 M5005_Spy_0301     TRUE 0.893 15.000 0.123 NA   NA
 922582 922583 M5005_Spy_0301 M5005_Spy_0302     FALSE 0.072 178.000 0.000 NA   NA
 922583 922584 M5005_Spy_0302 M5005_Spy_0303   glr FALSE 0.173 178.000 0.014 NA   NA
 922584 922585 M5005_Spy_0303 M5005_Spy_0304 glr   TRUE 0.923 -3.000 0.034 1.000 N NA
 922585 922586 M5005_Spy_0304 M5005_Spy_0305     TRUE 0.942 -21.000 0.085 1.000   NA
 922586 922587 M5005_Spy_0305 M5005_Spy_0306     TRUE 0.939 -3.000 0.065 1.000   NA
 922587 922588 M5005_Spy_0306 M5005_Spy_0307     TRUE 0.947 -3.000 0.111 1.000   NA
 922588 922589 M5005_Spy_0307 M5005_Spy_0308     TRUE 0.902 0.000 0.017 NA   NA
 922589 922590 M5005_Spy_0308 M5005_Spy_0309     TRUE 0.987 -3.000 0.570 NA   NA
 922590 922591 M5005_Spy_0309 M5005_Spy_0310     TRUE 0.547 99.000 0.224 NA N NA
 922591 922592 M5005_Spy_0310 M5005_Spy_0311     TRUE 0.912 -3.000 0.014 NA   NA
 922592 922593 M5005_Spy_0311 M5005_Spy_0312     FALSE 0.135 178.000 0.002 NA   NA
 922593 922594 M5005_Spy_0312 M5005_Spy_0313     FALSE 0.022 311.000 0.000 NA   NA
 922594 922595 M5005_Spy_0313 M5005_Spy_0314     TRUE 0.983 2.000 0.600 NA   NA
 922595 922596 M5005_Spy_0314 M5005_Spy_0315     FALSE 0.088 293.000 0.050 1.000   NA
 922596 922597 M5005_Spy_0315 M5005_Spy_0316     TRUE 0.899 39.000 0.408 NA   NA
 922597 922598 M5005_Spy_0316 M5005_Spy_0317   hlyX FALSE 0.293 133.000 0.023 NA   NA
 922598 922599 M5005_Spy_0317 M5005_Spy_0318 hlyX pflC TRUE 0.877 6.000 0.028 NA   NA
 922599 922600 M5005_Spy_0318 M5005_Spy_0319 pflC ppaC FALSE 0.300 131.000 0.023 1.000 N NA
 922600 922601 M5005_Spy_0319 M5005_Spy_0320 ppaC   FALSE 0.410 76.000 0.015 NA   NA
 922602 922603 M5005_Spy_0321 M5005_Spy_0322 fhuG fhuB TRUE 0.988 72.000 0.857 0.041 Y NA
 922603 922604 M5005_Spy_0322 M5005_Spy_0323 fhuB fhuD TRUE 0.986 -10.000 0.179 1.000 Y NA
 922604 922605 M5005_Spy_0323 M5005_Spy_0324 fhuD fhuA TRUE 0.991 26.000 0.889 1.000 Y NA
 922605 922606 M5005_Spy_0324 M5005_Spy_0325 fhuA murE FALSE 0.118 246.000 0.062 1.000 N NA
 922607 922608 M5005_Spy_0326 M5005_Spy_0327   upp FALSE 0.177 168.000 0.002 1.000   NA
 922608 922609 M5005_Spy_0327 M5005_Spy_0328 upp clpP FALSE 0.103 224.000 0.010 1.000 N NA
 922609 922610 M5005_Spy_0328 M5005_Spy_0329 clpP   FALSE 0.043 492.000 0.065 NA   NA
 922610 922611 M5005_Spy_0329 M5005_Spy_0330   tmk FALSE 0.036 249.000 0.000 NA   NA
 922611 922612 M5005_Spy_0330 M5005_Spy_0331 tmk dnaX TRUE 0.933 18.000 0.254 1.000 N NA
 922612 922613 M5005_Spy_0331 M5005_Spy_0332 dnaX   TRUE 0.949 19.000 0.372 NA   NA
 922613 922614 M5005_Spy_0332 M5005_Spy_0333     FALSE 0.169 89.000 0.000 NA   NA
 922614 922615 M5005_Spy_0333 M5005_Spy_0334     FALSE 0.097 155.000 0.000 NA   NA
 922615 922616 M5005_Spy_0334 M5005_Spy_0335     TRUE 0.886 5.000 0.043 NA   NA
 922616 922617 M5005_Spy_0335 M5005_Spy_0336     TRUE 0.706 27.000 0.005 NA   NA
 922621 922622 M5005_Spy_0340 M5005_Spy_0341 lctO   FALSE 0.038 263.000 0.000 1.000   NA
 922622 922623 M5005_Spy_0341 M5005_Spy_0343     FALSE 0.013 489.000 0.000 NA   NA
 922623 922624 M5005_Spy_0343 M5005_Spy_0344     FALSE 0.153 103.000 0.000 NA   NA
 922624 922625 M5005_Spy_0344 M5005_Spy_0345   metS FALSE 0.038 243.000 0.000 NA   NA
 922625 922626 M5005_Spy_0345 M5005_Spy_0346 metS   FALSE 0.021 331.000 0.000 NA   NA
 922626 922627 M5005_Spy_0346 M5005_Spy_0347   nrdF.1 TRUE 0.794 -3.000 0.000 NA   NA
 922627 922628 M5005_Spy_0347 M5005_Spy_0348 nrdF.1 nrdI TRUE 0.993 4.000 0.643 NA Y NA
 922628 922629 M5005_Spy_0348 M5005_Spy_0349 nrdI nrdE.1 TRUE 0.997 -33.000 1.000 NA Y NA
 922629 922630 M5005_Spy_0349 M5005_Spy_0350 nrdE.1   TRUE 0.791 -21.000 0.000 NA   NA
 922632 922633 M5005_Spy_0352 M5005_Spy_0353     FALSE 0.116 142.000 0.000 NA   NA
 922636 922637 M5005_Spy_0356 M5005_Spy_0357 speJ   FALSE 0.036 248.000 0.000 NA   NA
 922638 922639 M5005_Spy_0358 M5005_Spy_0359     TRUE 0.990 -16.000 0.710 NA   NA
 922639 922640 M5005_Spy_0359 M5005_Spy_0360     TRUE 0.694 46.000 0.067 1.000   NA
 922640 922641 M5005_Spy_0360 M5005_Spy_0361     FALSE 0.025 333.000 0.000 1.000   NA
 922641 922642 M5005_Spy_0361 M5005_Spy_0362   gcaD FALSE 0.147 173.000 0.002 1.000 N NA
 922642 922643 M5005_Spy_0362 M5005_Spy_0363 gcaD   TRUE 0.723 31.000 0.015 1.000 N NA
 922643 922644 M5005_Spy_0363 M5005_Spy_0364     TRUE 0.907 0.000 0.025 NA   NA
 922644 922645 M5005_Spy_0364 M5005_Spy_0365   pfs TRUE 0.831 20.000 0.041 NA   NA
 922645 922646 M5005_Spy_0365 M5005_Spy_0366 pfs   FALSE 0.105 151.000 0.000 NA   NA
 922648 922649 M5005_Spy_0368 M5005_Spy_0369 mtsA mtsB TRUE 0.819 64.000 0.135 1.000 Y NA
 922649 922650 M5005_Spy_0369 M5005_Spy_0370 mtsB mtsC TRUE 0.977 1.000 0.130 1.000 Y NA
 922654 922655 M5005_Spy_0374 M5005_Spy_0375 rplK rplA TRUE 0.980 106.000 0.838 0.040 Y NA
 922655 922656 M5005_Spy_0375 M5005_Spy_0376 rplA   FALSE 0.019 351.000 0.000 1.000 N NA
 922656 922657 M5005_Spy_0376 M5005_Spy_0377     FALSE 0.105 165.000 0.000 1.000   NA
 922657 922658 M5005_Spy_0377 M5005_Spy_0378   pyrH TRUE 0.988 -25.000 0.008 0.003   NA
 922658 922659 M5005_Spy_0378 M5005_Spy_0379 pyrH   TRUE 0.989 -12.000 0.008 0.003   NA
 922659 922660 M5005_Spy_0379 M5005_Spy_0380   rrf TRUE 0.960 29.000 0.626 1.000   NA
 922660 922661 M5005_Spy_0380 M5005_Spy_0381 rrf   FALSE 0.334 109.000 0.012 1.000   NA
 922661 922662 M5005_Spy_0381 M5005_Spy_0382   msrA.2 FALSE 0.454 73.000 0.016 1.000   NA
 922662 922663 M5005_Spy_0382 M5005_Spy_0383 msrA.2   TRUE 0.942 -3.000 0.080 1.000   NA
 922663 922664 M5005_Spy_0383 M5005_Spy_0384     FALSE 0.258 156.000 0.023 1.000   NA
 922664 922665 M5005_Spy_0384 M5005_Spy_0385     FALSE 0.029 275.000 0.000 NA   NA
 922665 922666 M5005_Spy_0385 M5005_Spy_0386   phoH FALSE 0.175 159.000 0.004 NA   NA
 922666 922667 M5005_Spy_0386 M5005_Spy_0387 phoH   TRUE 0.518 46.000 0.005 NA N NA
 922667 922668 M5005_Spy_0387 M5005_Spy_0388     FALSE 0.265 108.000 0.003 NA   NA
 922668 922669 M5005_Spy_0388 M5005_Spy_0389   dgk TRUE 0.922 -19.000 0.035 NA   NA
 922669 922670 M5005_Spy_0389 M5005_Spy_0390 dgk era FALSE 0.379 120.000 0.063 1.000   NA
 922670 922671 M5005_Spy_0390 M5005_Spy_0391 era   TRUE 0.912 -16.000 0.007 1.000   NA
 922673 922674 M5005_Spy_0393 M5005_Spy_0394     TRUE 0.969 15.000 0.500 NA   NA
 922675 922676 M5005_Spy_0395 M5005_Spy_0396     TRUE 0.779 -61.000 0.000 NA   NA
 922676 922677 M5005_Spy_0396 M5005_Spy_0397     TRUE 0.977 -3.000 0.000 0.015   NA
 922678 922679 M5005_Spy_0398 M5005_Spy_0399     TRUE 0.761 65.000 0.333 NA   NA
 922679 922680 M5005_Spy_0399 M5005_Spy_0400   silD FALSE 0.025 294.000 0.000 NA   NA
 922682 922683 M5005_Spy_0402 M5005_Spy_0403     FALSE 0.374 45.000 0.000 NA   NA
 922687 922688 M5005_Spy_0407 M5005_Spy_0408 mutR fpg FALSE 0.175 172.000 0.004 1.000   NA
 922688 922689 M5005_Spy_0408 M5005_Spy_0409 fpg   TRUE 0.927 -90.000 0.066 1.000 N NA
 922689 922690 M5005_Spy_0409 M5005_Spy_0410     FALSE 0.076 190.000 0.000 1.000   NA
 922690 922691 M5005_Spy_0410 M5005_Spy_0411     FALSE 0.290 122.000 0.007 1.000   NA
 922691 922692 M5005_Spy_0411 M5005_Spy_0412     TRUE 0.910 -3.000 0.012 1.000 N NA
 922692 922693 M5005_Spy_0412 M5005_Spy_0413   secG TRUE 0.595 46.000 0.012 1.000 N NA
 922693 922694 M5005_Spy_0413 M5005_Spy_0414 secG   FALSE 0.400 97.000 0.064 1.000 N NA
 922694 922695 M5005_Spy_0414 M5005_Spy_0415     TRUE 0.982 3.000 0.143 0.035 N NA
 922695 922696 M5005_Spy_0415 M5005_Spy_0416     TRUE 0.913 15.000 0.000 1.000 Y NA
 922697 922698 M5005_Spy_0417 M5005_Spy_0418 pcp   TRUE 0.810 50.000 0.300 NA   NA
 922698 922699 M5005_Spy_0418 M5005_Spy_0419     TRUE 0.993 0.000 0.939 NA   NA
 922699 922700 M5005_Spy_0419 M5005_Spy_0420     FALSE 0.050 211.000 0.000 NA   NA
 922700 922701 M5005_Spy_0420 M5005_Spy_0421   gloA FALSE 0.229 145.000 0.012 NA N NA
 922701 922702 M5005_Spy_0421 M5005_Spy_0422 gloA   TRUE 0.863 11.000 0.019 1.000 N NA
 922702 922703 M5005_Spy_0422 M5005_Spy_0423   pepQ TRUE 0.622 49.000 0.053 1.000 N NA
 922704 922705 M5005_Spy_0424 M5005_Spy_0425 ccpA   FALSE 0.310 131.000 0.033 1.000 N NA
 922705 922706 M5005_Spy_0425 M5005_Spy_0426     TRUE 0.998 2.000 0.413 0.011 Y NA
 922706 922707 M5005_Spy_0426 M5005_Spy_0427   thrS FALSE 0.015 422.000 0.000 1.000 N NA
 922707 922708 M5005_Spy_0427 M5005_Spy_0428 thrS drrA FALSE 0.281 141.000 0.012 1.000   NA
 922708 922709 M5005_Spy_0428 M5005_Spy_0429 drrA   TRUE 0.741 2.000 0.000 NA   NA
 922709 922710 M5005_Spy_0429 M5005_Spy_0430     TRUE 0.900 2.000 0.042 NA   NA
 922710 922711 M5005_Spy_0430 M5005_Spy_0431     FALSE 0.056 201.000 0.000 NA   NA
 922711 922712 M5005_Spy_0431 M5005_Spy_0432     FALSE 0.019 395.000 0.000 1.000   NA
 922712 922713 M5005_Spy_0432 M5005_Spy_0433     TRUE 0.995 -43.000 0.576 1.000 Y NA
 922713 922714 M5005_Spy_0433 M5005_Spy_0434     TRUE 0.539 56.000 0.030 NA   NA
 922714 922715 M5005_Spy_0434 M5005_Spy_0435   vicR FALSE 0.204 162.000 0.013 NA   NA
 922715 922716 M5005_Spy_0435 M5005_Spy_0436 vicR vicK TRUE 0.998 -7.000 0.597 0.056 Y NA
 922716 922717 M5005_Spy_0436 M5005_Spy_0437 vicK vicX TRUE 0.900 4.000 0.038 1.000   NA
 922717 922718 M5005_Spy_0437 M5005_Spy_0438 vicX acpA FALSE 0.031 444.000 0.002 1.000   NA
 922718 922719 M5005_Spy_0438 M5005_Spy_0439 acpA smc TRUE 0.929 1.000 0.120 1.000 N NA
 922721 922722 M5005_Spy_0441 M5005_Spy_0442 aroE.2   FALSE 0.129 99.000 0.000 NA N NA
 922722 922723 M5005_Spy_0442 M5005_Spy_0443     TRUE 0.741 2.000 0.000 NA   NA
 922723 922724 M5005_Spy_0443 M5005_Spy_0444     TRUE 0.803 -7.000 0.000 NA   NA
 922724 922725 M5005_Spy_0444 M5005_Spy_0445   metK1 TRUE 0.687 10.000 0.000 NA   NA
 922725 922726 M5005_Spy_0445 M5005_Spy_0446 metK1   TRUE 0.796 -16.000 0.000 NA   NA
 922726 922727 M5005_Spy_0446 M5005_Spy_0447     FALSE 0.284 55.000 0.000 NA   NA
 922727 922728 M5005_Spy_0447 M5005_Spy_0448     FALSE 0.012 526.000 0.000 NA   NA
 922728 922729 M5005_Spy_0448 M5005_Spy_0449     TRUE 0.564 24.000 0.000 NA   NA
 922729 922730 M5005_Spy_0449 M5005_Spy_0450   mefE FALSE 0.211 85.000 0.000 1.000   NA
 922731 922732 M5005_Spy_0451 M5005_Spy_0452     TRUE 0.980 -10.000 0.400 NA   NA
 922732 922733 M5005_Spy_0452 M5005_Spy_0453     FALSE 0.177 85.000 0.000 NA   NA
 922733 922734 M5005_Spy_0453 M5005_Spy_0454     TRUE 0.803 -9.000 0.000 NA   NA
 922734 922735 M5005_Spy_0454 M5005_Spy_0455     TRUE 0.977 0.000 0.429 NA   NA
 922736 922737 M5005_Spy_0456 M5005_Spy_0457     TRUE 0.965 0.000 0.273 NA   NA
 922737 922738 M5005_Spy_0457 M5005_Spy_0458     TRUE 0.952 19.000 0.400 NA   NA
 922738 922739 M5005_Spy_0458 M5005_Spy_0459     FALSE 0.152 105.000 0.000 NA   NA
 922739 922740 M5005_Spy_0459 M5005_Spy_0460     FALSE 0.232 66.000 0.000 NA   NA
 922740 922741 M5005_Spy_0460 M5005_Spy_0461     FALSE 0.014 417.000 0.000 NA   NA
 922741 922742 M5005_Spy_0461 M5005_Spy_0462     TRUE 0.616 24.000 0.000 1.000   NA
 922742 922743 M5005_Spy_0462 M5005_Spy_0463     TRUE 0.675 14.000 0.000 1.000 N NA
 922743 922744 M5005_Spy_0463 M5005_Spy_0464   mccF FALSE 0.034 228.000 0.000 NA N NA
 922744 922745 M5005_Spy_0464 M5005_Spy_0465 mccF   TRUE 0.679 13.000 0.000 NA   NA
 922745 922746 M5005_Spy_0465 M5005_Spy_0466     FALSE 0.135 120.000 0.000 NA   NA
 922747 922748 M5005_Spy_0467 M5005_Spy_0468     TRUE 0.976 48.000 0.333 0.073 Y NA
 922749 922750 M5005_Spy_0469 M5005_Spy_0470     FALSE 0.228 67.000 0.000 NA   NA
 922750 922751 M5005_Spy_0470 M5005_Spy_0471     TRUE 0.993 4.000 0.375 0.019   NA
 922751 922752 M5005_Spy_0471 M5005_Spy_0472   ftsY TRUE 0.972 0.000 0.007 0.081   NA
 922754 922755 M5005_Spy_0474 M5005_Spy_0475 licT   TRUE 0.458 164.000 0.259 1.000   NA
 922755 922756 M5005_Spy_0475 M5005_Spy_0476   bglA TRUE 0.978 19.000 0.318 1.000 Y NA
 922757 922758 M5005_Spy_0477 M5005_Spy_0478     TRUE 0.991 0.000 0.841 NA   NA
 922761 922762 M5005_Spy_0480 M5005_Spy_0482     TRUE 0.960 -58.000 0.215 NA   NA
 922762 922763 M5005_Spy_0482 M5005_Spy_0483     TRUE 0.512 64.000 0.051 NA   NA
 922763 922764 M5005_Spy_0483 M5005_Spy_0484   ptsK FALSE 0.176 305.000 0.017 NA Y NA
 922764 922765 M5005_Spy_0484 M5005_Spy_0485 ptsK lgt TRUE 0.983 -3.000 0.494 1.000 N NA
 922765 922766 M5005_Spy_0485 M5005_Spy_0486 lgt   TRUE 0.842 22.000 0.079 NA   NA
 922766 922767 M5005_Spy_0486 M5005_Spy_0487     TRUE 0.964 -7.000 0.206 NA   NA
 922769 922770 M5005_Spy_0489 M5005_Spy_0490     TRUE 0.982 -28.000 0.000 0.003   NA
 922770 922771 M5005_Spy_0490 M5005_Spy_0491     TRUE 0.881 91.000 0.156 0.003   NA
 922774 922775 M5005_Spy_0494 M5005_Spy_0495   lysS FALSE 0.122 136.000 0.000 NA   NA
 922777 922778 M5005_Spy_0497 M5005_Spy_0498     FALSE 0.053 341.000 0.018 NA   NA
 922778 922779 M5005_Spy_0498 M5005_Spy_0499     FALSE 0.330 91.000 0.010 NA   NA
 922779 922780 M5005_Spy_0499 M5005_Spy_0500     FALSE 0.077 269.000 0.016 NA   NA
 922781 922782 M5005_Spy_0501 M5005_Spy_0502     TRUE 0.978 -16.000 0.375 NA   NA
 922783 922784 M5005_Spy_0503 M5005_Spy_0504   pepF TRUE 0.933 -7.000 0.059 1.000 N NA
 922785 922786 M5005_Spy_0505 M5005_Spy_0506 ppc ftsW FALSE 0.211 170.000 0.028 1.000 N NA
 922788 922789 M5005_Spy_0508 M5005_Spy_0509   tpi FALSE 0.078 241.000 0.003 1.000 N NA
 922790 922791 M5005_Spy_0510 M5005_Spy_0511   murM TRUE 0.997 -13.000 0.200 0.011 Y NA
 922791 922792 M5005_Spy_0511 M5005_Spy_0512 murM   TRUE 0.983 0.000 0.500 1.000   NA
 922792 922793 M5005_Spy_0512 M5005_Spy_0513     FALSE 0.105 151.000 0.000 NA   NA
 922793 922794 M5005_Spy_0513 M5005_Spy_0514     FALSE 0.214 72.000 0.000 NA   NA
 922795 922796 M5005_Spy_0515 M5005_Spy_0516   pacL FALSE 0.042 231.000 0.000 NA   NA
 922797 922798 M5005_Spy_0517 M5005_Spy_0518 regR   TRUE 0.858 64.000 0.562 NA   NA
 922798 922799 M5005_Spy_0518 M5005_Spy_0519   agaD TRUE 0.706 87.000 0.375 NA   NA
 922799 922800 M5005_Spy_0519 M5005_Spy_0520 agaD   TRUE 0.999 -13.000 0.933 0.021 Y NA
 922800 922801 M5005_Spy_0520 M5005_Spy_0521   agaV TRUE 0.998 19.000 0.933 0.021 Y NA
 922801 922802 M5005_Spy_0521 M5005_Spy_0522 agaV   TRUE 0.843 36.000 0.200 1.000   NA
 922803 922804 M5005_Spy_0523 M5005_Spy_0524   idnO FALSE 0.075 176.000 0.000 NA   NA
 922804 922805 M5005_Spy_0524 M5005_Spy_0525 idnO   TRUE 0.884 25.000 0.197 1.000 N NA
 922805 922806 M5005_Spy_0525 M5005_Spy_0526     TRUE 0.928 29.000 0.094 1.000 Y NA
 922806 922807 M5005_Spy_0526 M5005_Spy_0527   kgdA TRUE 0.976 5.000 0.167 1.000 Y NA
 922807 922808 M5005_Spy_0527 M5005_Spy_0528 kgdA   FALSE 0.156 296.000 0.000 0.049   NA
 922808 922809 M5005_Spy_0528 M5005_Spy_0529     FALSE 0.013 641.000 0.000 1.000   NA
 922809 922810 M5005_Spy_0529 M5005_Spy_0530   prfB FALSE 0.201 154.000 0.006 1.000 N NA
 922810 922811 M5005_Spy_0530 M5005_Spy_0531 prfB ftsE TRUE 0.845 19.000 0.053 1.000 N NA
 922811 922812 M5005_Spy_0531 M5005_Spy_0532 ftsE ftsX TRUE 0.993 -7.000 0.431 1.000 Y NA
 922814 922815 M5005_Spy_0534 M5005_Spy_0535     TRUE 0.989 4.000 0.051 0.001   NA
 922815 922816 M5005_Spy_0535 M5005_Spy_0536   dinG FALSE 0.130 150.000 0.000 1.000   NA
 922816 922817 M5005_Spy_0536 M5005_Spy_0537 dinG aspC FALSE 0.021 335.000 0.000 1.000 N NA
 922817 922818 M5005_Spy_0537 M5005_Spy_0538 aspC asnS TRUE 0.845 21.000 0.068 1.000 N NA
 922818 922819 M5005_Spy_0538 M5005_Spy_0539 asnS   FALSE 0.014 414.000 0.000 NA   NA
 922819 922820 M5005_Spy_0539 M5005_Spy_0540     TRUE 0.963 -3.000 0.214 NA   NA
 922820 922821 M5005_Spy_0540 M5005_Spy_0541     TRUE 0.982 -3.000 0.470 NA   NA
 922821 922822 M5005_Spy_0541 M5005_Spy_0542   pepD FALSE 0.280 133.000 0.015 NA   NA
 922822 922823 M5005_Spy_0542 M5005_Spy_0543 pepD   TRUE 0.473 152.000 0.250 1.000 N NA
 922823 922824 M5005_Spy_0543 M5005_Spy_0544     FALSE 0.329 148.000 0.091 1.000 N NA
 922824 922825 M5005_Spy_0544 M5005_Spy_0545   agaS TRUE 0.904 19.000 0.178 1.000 N NA
 922826 922827 M5005_Spy_0546 M5005_Spy_0547 rpmE   FALSE 0.349 115.000 0.020 1.000   NA
 922828 922829 M5005_Spy_0548 M5005_Spy_0549     FALSE 0.307 176.000 0.167 1.000 N NA
 922829 922830 M5005_Spy_0549 M5005_Spy_0550     TRUE 0.942 -7.000 0.094 1.000 N NA
 922830 922831 M5005_Spy_0550 M5005_Spy_0551   rplS FALSE 0.272 115.000 0.006 1.000 N NA
 922831 922832 M5005_Spy_0551 M5005_Spy_T0045 rplS   FALSE 0.036 247.000 0.000 NA   NA
 922832 922833 M5005_Spy_T0045 M5005_Spy_0552     FALSE 0.010 685.000 0.000 NA   NA
 922833 922834 M5005_Spy_0552 M5005_Spy_0553   gyrB TRUE 0.901 1.000 0.013 1.000   NA
 922834 922835 M5005_Spy_0553 M5005_Spy_0554 gyrB   FALSE 0.043 368.000 0.011 1.000 N NA
 922838 922839 M5005_Spy_0557 M5005_Spy_0558     FALSE 0.331 49.000 0.000 NA   NA
 922839 922840 M5005_Spy_0558 M5005_Spy_0559     FALSE 0.018 362.000 0.000 NA   NA
 922840 922841 M5005_Spy_0559 M5005_Spy_0560     TRUE 0.794 -3.000 0.000 NA   NA
 922842 922843 M5005_Spy_0561 M5005_Spy_0562 epf sagA FALSE 0.010 865.000 0.000 NA   NA
 922843 922844 M5005_Spy_0562 M5005_Spy_0563 sagA sagB FALSE 0.044 222.000 0.000 NA   NA
 922844 922845 M5005_Spy_0563 M5005_Spy_0564 sagB sagC TRUE 0.961 -3.000 0.200 NA   NA
 922845 922846 M5005_Spy_0564 M5005_Spy_0565 sagC sagD TRUE 0.938 20.000 0.318 NA   NA
 922846 922847 M5005_Spy_0565 M5005_Spy_0566 sagD sagE TRUE 0.944 -25.000 0.136 NA   NA
 922847 922848 M5005_Spy_0566 M5005_Spy_0567 sagE sagF TRUE 0.991 -3.000 0.750 NA   NA
 922848 922849 M5005_Spy_0567 M5005_Spy_0568 sagF sagG TRUE 0.975 23.000 0.750 NA   NA
 922849 922850 M5005_Spy_0568 M5005_Spy_0569 sagG sagH TRUE 0.974 9.000 0.500 1.000 N NA
 922850 922851 M5005_Spy_0569 M5005_Spy_0570 sagH sagI TRUE 0.997 -3.000 0.160 0.007 Y NA
 922851 922852 M5005_Spy_0570 M5005_Spy_0571 sagI   FALSE 0.014 571.000 0.000 1.000   NA
 922852 922853 M5005_Spy_0571 M5005_Spy_0572     FALSE 0.028 278.000 0.000 NA   NA
 922853 922854 M5005_Spy_0572 M5005_Spy_0573   lig FALSE 0.135 194.000 0.010 NA   NA
 922854 922855 M5005_Spy_0573 M5005_Spy_0574 lig   TRUE 0.844 14.000 0.013 1.000 N NA
 922855 922856 M5005_Spy_0574 M5005_Spy_0575   atpE FALSE 0.019 393.000 0.000 1.000   NA
 922856 922857 M5005_Spy_0575 M5005_Spy_0576 atpE atpB TRUE 0.967 35.000 0.189 0.009   NA
 922857 922858 M5005_Spy_0576 M5005_Spy_0577 atpB atpF TRUE 0.989 18.000 0.032 0.009 Y NA
 922858 922859 M5005_Spy_0577 M5005_Spy_0578 atpF atpH TRUE 0.997 0.000 0.222 0.009 Y NA
 922859 922860 M5005_Spy_0578 M5005_Spy_0579 atpH atpA TRUE 0.999 16.000 0.864 0.009 Y NA
 922860 922861 M5005_Spy_0579 M5005_Spy_0580 atpA atpG TRUE 0.999 16.000 0.846 0.009 Y NA
 922861 922862 M5005_Spy_0580 M5005_Spy_0581 atpG atpD TRUE 0.968 162.000 0.724 0.009 Y NA
 922862 922863 M5005_Spy_0581 M5005_Spy_0582 atpD atpC TRUE 0.999 13.000 0.837 0.009 Y NA
 922863 922864 M5005_Spy_0582 M5005_Spy_0583 atpC   FALSE 0.088 266.000 0.039 NA   NA
 922864 922865 M5005_Spy_0583 M5005_Spy_0584   murA FALSE 0.275 227.000 0.279 NA   NA
 922865 922866 M5005_Spy_0584 M5005_Spy_0585 murA epuA TRUE 0.914 4.000 0.110 NA   NA
 922866 922867 M5005_Spy_0585 M5005_Spy_0586 epuA endA TRUE 0.850 36.000 0.237 NA   NA
 922867 922868 M5005_Spy_0586 M5005_Spy_0587 endA pheS FALSE 0.034 283.000 0.000 1.000   NA
 922868 922869 M5005_Spy_0587 M5005_Spy_0588 pheS pheT TRUE 0.955 195.000 0.574 0.001 Y NA
 922869 922870 M5005_Spy_0588 M5005_Spy_0589 pheT   FALSE 0.257 110.000 0.002 1.000 N NA
 922870 922871 M5005_Spy_0589 M5005_Spy_0590     TRUE 0.901 -7.000 0.006 NA   NA
 922871 922872 M5005_Spy_0590 M5005_Spy_0591     TRUE 0.511 73.000 0.095 NA   NA
 922872 922873 M5005_Spy_0591 M5005_Spy_0592     TRUE 0.971 10.000 0.444 1.000   NA
 922875 922876 M5005_Spy_0594 M5005_Spy_0595 rexB rexA TRUE 0.992 -39.000 0.070 0.072 Y NA
 922876 922877 M5005_Spy_0595 M5005_Spy_0596 rexA   FALSE 0.122 140.000 0.000 1.000 N NA
 922877 922878 M5005_Spy_0596 M5005_Spy_0597   rpsU FALSE 0.310 141.000 0.027 1.000   NA
 922880 922881 M5005_Spy_0599 M5005_Spy_0600 dnaG rpoD TRUE 0.938 9.000 0.209 1.000 N NA
 922881 922882 M5005_Spy_0600 M5005_Spy_0601 rpoD   FALSE 0.117 236.000 0.044 NA   NA
 922882 922883 M5005_Spy_0601 M5005_Spy_0602   rmlD FALSE 0.406 138.000 0.152 NA   NA
 922883 922884 M5005_Spy_0602 M5005_Spy_0603 rmlD rgpAc TRUE 0.754 119.000 0.212 1.000 Y NA
 922884 922885 M5005_Spy_0603 M5005_Spy_0604 rgpAc rgpBc TRUE 0.973 -10.000 0.289 NA   NA
 922885 922886 M5005_Spy_0604 M5005_Spy_0605 rgpBc rgpCc TRUE 0.960 3.000 0.289 NA   NA
 922886 922887 M5005_Spy_0605 M5005_Spy_0606 rgpCc rgpDc TRUE 0.773 0.000 0.000 1.000 N NA
 922887 922888 M5005_Spy_0606 M5005_Spy_0607 rgpDc rgpEc TRUE 0.547 25.000 0.000 NA   NA
 922888 922889 M5005_Spy_0607 M5005_Spy_0608 rgpEc rgpFc TRUE 0.978 -3.000 0.385 NA   NA
 922889 922890 M5005_Spy_0608 M5005_Spy_0609 rgpFc   TRUE 0.950 -3.000 0.000 NA Y NA
 922890 922891 M5005_Spy_0609 M5005_Spy_0610     FALSE 0.270 179.000 0.000 NA Y NA
 922891 922892 M5005_Spy_0610 M5005_Spy_0611     TRUE 0.982 2.000 0.568 NA   NA
 922892 922893 M5005_Spy_0611 M5005_Spy_0612   amrA TRUE 0.924 -7.000 0.027 NA   NA
 922893 922894 M5005_Spy_0612 M5005_Spy_0613 amrA   TRUE 0.957 -19.000 0.182 NA   NA
 922894 922895 M5005_Spy_0613 M5005_Spy_0614   pepT FALSE 0.161 94.000 0.000 NA   NA
 922895 922896 M5005_Spy_0614 M5005_Spy_0615 pepT ebsA TRUE 0.684 41.000 0.051 NA   NA
 922898 922899 M5005_Spy_0617 M5005_Spy_0618   cmk TRUE 0.849 15.000 0.012 1.000   NA
 922899 922900 M5005_Spy_0618 M5005_Spy_0619 cmk infC FALSE 0.197 162.000 0.010 1.000 N NA
 922900 922901 M5005_Spy_0619 M5005_Spy_0620 infC rpl36 TRUE 0.975 42.000 0.652 1.000 Y NA
 922901 922902 M5005_Spy_0620 M5005_Spy_0621 rpl36 rplT TRUE 0.993 59.000 0.928 0.028 Y NA
 922904 922905 M5005_Spy_0623 M5005_Spy_0624   aroD TRUE 0.949 -3.000 0.125 1.000   NA
 922905 922906 M5005_Spy_0624 M5005_Spy_0625 aroD aroF TRUE 0.905 94.000 0.004 0.003 Y NA
 922906 922907 M5005_Spy_0625 M5005_Spy_0626 aroF   FALSE 0.426 61.000 0.005 NA   NA
 922907 922908 M5005_Spy_0626 M5005_Spy_0627   gor FALSE 0.104 221.000 0.010 NA   NA
 922909 922910 M5005_Spy_0628 M5005_Spy_0629 folC.2   TRUE 0.902 30.000 0.308 NA   NA
 922911 922912 M5005_Spy_0630 M5005_Spy_0631 nifS1 thiI TRUE 0.959 12.000 0.349 1.000 N NA
 922912 922913 M5005_Spy_0631 M5005_Spy_0632 thiI capA TRUE 0.665 38.000 0.014 1.000 N NA
 922913 922914 M5005_Spy_0632 M5005_Spy_0633 capA rplU FALSE 0.051 214.000 0.000 1.000 N NA
 922914 922915 M5005_Spy_0633 M5005_Spy_0634 rplU   TRUE 0.974 12.000 0.208 NA Y NA
 922915 922916 M5005_Spy_0634 M5005_Spy_0635   rpmA TRUE 0.948 28.000 0.203 NA Y NA
 922916 922917 M5005_Spy_0635 M5005_Spy_0636 rpmA   FALSE 0.020 348.000 0.000 1.000 N NA
 922917 922918 M5005_Spy_0636 M5005_Spy_0637   lsp TRUE 0.943 -3.000 0.119 1.000 N NA
 922918 922919 M5005_Spy_0637 M5005_Spy_0638 lsp   TRUE 0.939 -10.000 0.082 1.000 N NA
 922919 922920 M5005_Spy_0638 M5005_Spy_0639   pyrR FALSE 0.047 396.000 0.048 1.000 N NA
 922920 922921 M5005_Spy_0639 M5005_Spy_0640 pyrR pyrP TRUE 0.964 16.000 0.140 1.000 Y NA
 922921 922922 M5005_Spy_0640 M5005_Spy_0641 pyrP pyrB TRUE 0.801 61.000 0.064 1.000 Y NA
 922922 922923 M5005_Spy_0641 M5005_Spy_0642 pyrB carA TRUE 0.854 44.000 0.014 1.000 Y NA
 922923 922924 M5005_Spy_0642 M5005_Spy_0643 carA carB TRUE 0.811 226.000 0.117 0.001 Y NA
 922924 922925 M5005_Spy_0643 M5005_Spy_0644 carB   FALSE 0.064 300.000 0.017 1.000 N NA
 922925 922926 M5005_Spy_0644 M5005_Spy_0645     TRUE 0.993 0.000 0.923 1.000 N NA
 922926 922927 M5005_Spy_0645 M5005_Spy_0646     TRUE 0.996 12.000 0.923 1.000 Y NA
 922927 922928 M5005_Spy_0646 M5005_Spy_0647     FALSE 0.035 254.000 0.000 1.000 N NA
 922928 922929 M5005_Spy_0647 M5005_Spy_0648   rpsP FALSE 0.237 127.000 0.003 1.000 N NA
 922929 922930 M5005_Spy_0648 M5005_Spy_0649 rpsP   TRUE 0.966 10.000 0.385 1.000   NA
 922930 922931 M5005_Spy_0649 M5005_Spy_0650     TRUE 0.694 9.000 0.000 NA   NA
 922931 922932 M5005_Spy_0650 M5005_Spy_0651     FALSE 0.010 795.000 0.000 NA   NA
 922932 922933 M5005_Spy_0651 M5005_Spy_0652     TRUE 0.917 20.000 0.200 1.000   NA
 922935 922936 M5005_Spy_0654 M5005_Spy_0655   rimM FALSE 0.050 215.000 0.000 1.000 N NA
 922936 922937 M5005_Spy_0655 M5005_Spy_0656 rimM trmD TRUE 0.996 -10.000 0.672 1.000 Y NA
 922937 922938 M5005_Spy_0656 M5005_Spy_0657 trmD trxB TRUE 0.885 0.000 0.007 1.000 N NA
 922938 922939 M5005_Spy_0657 M5005_Spy_0658 trxB   FALSE 0.208 178.000 0.059 NA   NA
 922939 922940 M5005_Spy_0658 M5005_Spy_0659   apbA TRUE 0.956 13.000 0.333 NA   NA
 922940 922941 M5005_Spy_0659 M5005_Spy_0660 apbA fruR FALSE 0.033 256.000 0.000 1.000 N NA
 922941 922942 M5005_Spy_0660 M5005_Spy_0661 fruR fruB TRUE 0.996 -3.000 0.721 1.000 Y NA
 922942 922943 M5005_Spy_0661 M5005_Spy_0662 fruB fruA TRUE 0.997 -3.000 0.816 1.000 Y NA
 922943 922944 M5005_Spy_0662 M5005_Spy_0663 fruA mur1.1 FALSE 0.353 99.000 0.022 1.000 N NA
 922944 922945 M5005_Spy_0663 M5005_Spy_0664 mur1.1 mur1.2 TRUE 0.950 152.000 0.333 0.002 Y NA
 922946 922947 M5005_Spy_0665 M5005_Spy_0666     FALSE 0.054 203.000 0.000 NA   NA
 922947 922948 M5005_Spy_0666 M5005_Spy_0667     TRUE 0.788 -25.000 0.000 NA   NA
 922948 922949 M5005_Spy_0667 M5005_Spy_0668   mac FALSE 0.076 175.000 0.000 NA   NA
 922950 922951 M5005_Spy_0669 M5005_Spy_0670     FALSE 0.044 224.000 0.000 NA   NA
 922951 922952 M5005_Spy_0670 M5005_Spy_0671     FALSE 0.052 228.000 0.000 1.000   NA
 922952 922953 M5005_Spy_0671 M5005_Spy_0672     TRUE 0.938 0.000 0.139 NA   NA
 922953 922954 M5005_Spy_0672 M5005_Spy_0673   papS FALSE 0.264 125.000 0.009 NA   NA
 922954 922955 M5005_Spy_0673 M5005_Spy_0674 papS   TRUE 0.935 -3.000 0.056 1.000   NA
 922955 922956 M5005_Spy_0674 M5005_Spy_0675     FALSE 0.032 257.000 0.000 NA   NA
 922956 922957 M5005_Spy_0675 M5005_Spy_0676     TRUE 0.694 9.000 0.000 NA   NA
 922957 922958 M5005_Spy_0676 M5005_Spy_0677   fms FALSE 0.032 256.000 0.000 NA   NA
 922960 922961 M5005_Spy_0679 M5005_Spy_0680     TRUE 0.989 3.000 0.800 1.000   NA
 922961 922962 M5005_Spy_0680 M5005_Spy_0681     TRUE 0.991 9.000 0.533 1.000 Y NA
 922962 922963 M5005_Spy_0681 M5005_Spy_0682   mvaK1 FALSE 0.029 279.000 0.000 1.000 N NA
 922963 922964 M5005_Spy_0682 M5005_Spy_0683 mvaK1 mvaD TRUE 0.998 -18.000 0.281 0.003 Y NA
 922964 922965 M5005_Spy_0683 M5005_Spy_0684 mvaD mvaK2 TRUE 0.998 -7.000 0.312 0.005 Y NA
 922965 922966 M5005_Spy_0684 M5005_Spy_0685 mvaK2   TRUE 0.943 -7.000 0.097 1.000 N NA
 922967 922968 M5005_Spy_0686 M5005_Spy_0687   mvaS.1 TRUE 0.986 -13.000 0.183 1.000 Y NA
 922969 922970 M5005_Spy_0688 M5005_Spy_0689 thyA dyr TRUE 0.686 80.000 0.295 1.000 N NA
 922970 922971 M5005_Spy_0689 M5005_Spy_0690 dyr   TRUE 0.825 20.000 0.030 NA   NA
 922971 922972 M5005_Spy_0690 M5005_Spy_0691   clpX FALSE 0.273 130.000 0.012 NA   NA
 922972 922973 M5005_Spy_0691 M5005_Spy_0692 clpX   TRUE 0.887 10.000 0.043 1.000   NA
 922973 922974 M5005_Spy_0692 M5005_Spy_0693     FALSE 0.207 148.000 0.004 NA   NA
 922976 922977 M5005_Spy_0695 M5005_Spy_0696 rpiA deoB TRUE 0.714 77.000 0.018 1.000 Y NA
 922977 922978 M5005_Spy_0696 M5005_Spy_0697 deoB arsC TRUE 0.872 19.000 0.108 1.000 N NA
 922978 922979 M5005_Spy_0697 M5005_Spy_0698 arsC punA TRUE 0.942 -16.000 0.108 1.000 N NA
 922979 922980 M5005_Spy_0698 M5005_Spy_0699 punA deoD2 TRUE 0.457 663.000 0.040 0.001 Y NA
 922980 922981 M5005_Spy_0699 M5005_Spy_0700 deoD2 cpsX TRUE 0.943 -7.000 0.107 NA   NA
 922983 922984 M5005_Spy_0702 M5005_Spy_0703   pyrF FALSE 0.028 277.000 0.000 NA   NA
 922984 922985 M5005_Spy_0703 M5005_Spy_0704 pyrF pyrE TRUE 0.837 58.000 0.133 1.000 Y NA
 922985 922986 M5005_Spy_0704 M5005_Spy_0705 pyrE amiC FALSE 0.059 197.000 0.000 1.000 N NA
 922986 922987 M5005_Spy_0705 M5005_Spy_0706 amiC   TRUE 0.483 118.000 0.182 1.000 N NA
 922987 922988 M5005_Spy_0706 M5005_Spy_0707     TRUE 0.980 29.000 0.125 0.038 Y NA
 922988 922989 M5005_Spy_0707 M5005_Spy_0708   ung FALSE 0.298 133.000 0.025 1.000 N NA
 922989 922990 M5005_Spy_0708 M5005_Spy_0709 ung pyrC FALSE 0.262 132.000 0.009 1.000 N NA
 922992 922993 M5005_Spy_0711 M5005_Spy_0712 parE parC TRUE 0.980 91.000 0.552 0.003 Y NA
 922993 922994 M5005_Spy_0712 M5005_Spy_0713 parC bcaT FALSE 0.372 123.000 0.086 1.000 N NA
 922994 922995 M5005_Spy_0713 M5005_Spy_0714 bcaT   TRUE 0.559 64.000 0.095 NA   NA
 922995 922996 M5005_Spy_0714 M5005_Spy_T0046     FALSE 0.257 61.000 0.000 NA   NA
 922996 922997 M5005_Spy_T0046 M5005_Spy_T0047     FALSE 0.301 52.000 0.000 NA   NA
 922997 922998 M5005_Spy_T0047 M5005_Spy_0715     FALSE 0.131 124.000 0.000 NA   NA
 922998 922999 M5005_Spy_0715 M5005_Spy_T0048     FALSE 0.144 113.000 0.000 NA   NA
 923001 923002 M5005_Spy_0717 M5005_Spy_0718     FALSE 0.218 71.000 0.000 NA   NA
 923002 923003 M5005_Spy_0718 M5005_Spy_0719     FALSE 0.331 49.000 0.000 NA   NA
 923003 923004 M5005_Spy_0719 M5005_Spy_0720     FALSE 0.122 237.000 0.056 1.000 N NA
 923006 923007 M5005_Spy_0722 M5005_Spy_0723 miaA hflX TRUE 0.471 73.000 0.027 1.000   NA
 923007 923008 M5005_Spy_0723 M5005_Spy_0724 hflX   TRUE 0.926 -7.000 0.014 1.000   NA
 923008 923009 M5005_Spy_0724 M5005_Spy_0725   elaC TRUE 0.864 15.000 0.022 1.000   NA
 923009 923010 M5005_Spy_0725 M5005_Spy_0726 elaC   TRUE 0.932 0.000 0.074 1.000   NA
 923010 923011 M5005_Spy_0726 M5005_Spy_0727   recJ TRUE 0.924 -3.000 0.016 1.000   NA
 923011 923012 M5005_Spy_0727 M5005_Spy_0728 recJ apt FALSE 0.342 151.000 0.128 1.000 N NA
 923012 923013 M5005_Spy_0728 M5005_Spy_0729 apt dnaD FALSE 0.304 81.000 0.005 NA N NA
 923013 923014 M5005_Spy_0729 M5005_Spy_0730 dnaD nth TRUE 0.968 -3.000 0.007 NA Y NA
 923014 923015 M5005_Spy_0730 M5005_Spy_0731 nth   FALSE 0.381 72.000 0.006 NA   NA
 923015 923016 M5005_Spy_0731 M5005_Spy_0732     TRUE 0.632 91.000 0.283 NA   NA
 923016 923017 M5005_Spy_0732 M5005_Spy_0733     TRUE 0.667 40.000 0.021 NA   NA
 923017 923018 M5005_Spy_0733 M5005_Spy_0734   cpsFO TRUE 0.559 58.000 0.059 1.000 N NA
 923018 923019 M5005_Spy_0734 M5005_Spy_0735 cpsFO cpsFP TRUE 0.980 0.000 0.149 1.000 Y NA
 923019 923020 M5005_Spy_0735 M5005_Spy_0736 cpsFP cpsFQ TRUE 0.534 244.000 0.350 1.000 Y NA
 923020 923021 M5005_Spy_0736 M5005_Spy_0737 cpsFQ   FALSE 0.046 221.000 0.000 1.000 N NA
 923021 923022 M5005_Spy_0737 M5005_Spy_0738     TRUE 0.576 58.000 0.074 NA   NA
 923022 923023 M5005_Spy_0738 M5005_Spy_0739     TRUE 0.975 -10.000 0.324 NA   NA
 923024 923025 M5005_Spy_0740 M5005_Spy_0741 fbp   FALSE 0.346 93.000 0.015 NA   NA
 923026 923027 M5005_Spy_0742 M5005_Spy_0743     FALSE 0.069 182.000 0.000 NA   NA
 923027 923028 M5005_Spy_0743 M5005_Spy_0744     TRUE 0.802 -10.000 0.000 NA   NA
 923028 923029 M5005_Spy_0744 M5005_Spy_0745     FALSE 0.074 177.000 0.000 NA   NA
 923029 923030 M5005_Spy_0745 M5005_Spy_0746     TRUE 0.994 -3.000 0.895 1.000   NA
 923030 923031 M5005_Spy_0746 M5005_Spy_0747     FALSE 0.159 204.000 0.026 1.000   NA
 923031 923032 M5005_Spy_0747 M5005_Spy_0748   estA FALSE 0.400 133.000 0.143 NA   NA
 923032 923033 M5005_Spy_0748 M5005_Spy_0749 estA   TRUE 0.827 30.000 0.150 NA   NA
 923033 923034 M5005_Spy_0749 M5005_Spy_0750     TRUE 0.629 46.000 0.029 NA   NA
 923034 923035 M5005_Spy_0750 M5005_Spy_0751   acoA FALSE 0.033 285.000 0.000 1.000   NA
 923035 923036 M5005_Spy_0751 M5005_Spy_0752 acoA acoB TRUE 0.995 56.000 0.769 0.001 Y NA
 923036 923037 M5005_Spy_0752 M5005_Spy_0753 acoB acoC TRUE 0.732 185.000 0.077 0.047 Y NA
 923040 923041 M5005_Spy_0756 M5005_Spy_0757   hylA FALSE 0.013 446.000 0.000 NA   NA
 923043 923044 M5005_Spy_0759 M5005_Spy_0760     TRUE 0.991 0.000 0.796 1.000   NA
 923045 923046 M5005_Spy_0761 M5005_Spy_0762     TRUE 0.985 -3.000 0.502 NA   NA
 923046 923047 M5005_Spy_0762 M5005_Spy_0763   femD TRUE 0.668 54.000 0.150 NA   NA
 923047 923048 M5005_Spy_0763 M5005_Spy_0764 femD   FALSE 0.222 134.000 0.003 NA   NA
 923048 923049 M5005_Spy_0764 M5005_Spy_0765   hemN TRUE 0.918 -3.000 0.021 NA   NA
 923049 923050 M5005_Spy_0765 M5005_Spy_0766 hemN   TRUE 0.884 10.000 0.060 1.000 N NA
 923050 923051 M5005_Spy_0766 M5005_Spy_0767     TRUE 0.917 0.000 0.055 1.000 N NA
 923051 923052 M5005_Spy_0767 M5005_Spy_0768     TRUE 0.970 0.000 0.330 NA   NA
 923052 923053 M5005_Spy_0768 M5005_Spy_0769     FALSE 0.013 480.000 0.000 NA   NA
 923053 923054 M5005_Spy_0769 M5005_Spy_0770     TRUE 0.984 0.000 0.546 NA   NA
 923054 923055 M5005_Spy_0770 M5005_Spy_0771     TRUE 0.993 -3.000 0.876 NA   NA
 923055 923056 M5005_Spy_0771 M5005_Spy_0772     TRUE 0.970 -10.000 0.253 NA   NA
 11400636 923050   M5005_Spy_0766     FALSE NA 7944.000 0.000 NA   NA
 11542999 923050   M5005_Spy_0766     FALSE NA 7944.000 0.000 NA   NA
 11685391 923050   M5005_Spy_0766     FALSE NA 7944.000 0.000 NA   NA
 11400637 923050   M5005_Spy_0766     FALSE NA 7980.000 0.000 NA   NA
 11543000 923050   M5005_Spy_0766     FALSE NA 7980.000 0.000 NA   NA
 11685392 923050   M5005_Spy_0766     FALSE NA 7980.000 0.000 NA   NA
 11400638 923050   M5005_Spy_0766     FALSE NA 8010.000 0.000 NA   NA
 11543001 923050   M5005_Spy_0766     FALSE NA 8010.000 0.000 NA   NA
 11685393 923050   M5005_Spy_0766     FALSE NA 8010.000 0.000 NA   NA
 11400639 923050   M5005_Spy_0766     FALSE NA 8046.000 0.000 NA   NA
 11543002 923050   M5005_Spy_0766     FALSE NA 8046.000 0.000 NA   NA
 11685394 923050   M5005_Spy_0766     FALSE NA 8046.000 0.000 NA   NA
 11400640 923050   M5005_Spy_0766     FALSE NA 8076.000 0.000 NA   NA
 11543003 923050   M5005_Spy_0766     FALSE NA 8076.000 0.000 NA   NA
 11685395 923050   M5005_Spy_0766     FALSE NA 8076.000 0.000 NA   NA
 11400641 923050   M5005_Spy_0766     FALSE NA 8112.000 0.000 NA   NA
 11543004 923050   M5005_Spy_0766     FALSE NA 8112.000 0.000 NA   NA
 11685396 923050   M5005_Spy_0766     FALSE NA 8112.000 0.000 NA   NA
 11400642 923050   M5005_Spy_0766     FALSE NA 8142.000 0.000 NA   NA
 11543005 923050   M5005_Spy_0766     FALSE NA 8142.000 0.000 NA   NA
 11685397 923050   M5005_Spy_0766     FALSE NA 8142.000 0.000 NA   NA
 923058 923059 M5005_Spy_0774 M5005_Spy_0775     TRUE 0.841 64.000 0.000 0.002   NA
 923059 923060 M5005_Spy_0775 M5005_Spy_0776   lepA FALSE 0.263 124.000 0.003 1.000   NA
 923060 923061 M5005_Spy_0776 M5005_Spy_0777 lepA   FALSE 0.039 258.000 0.000 1.000   NA
 923061 923062 M5005_Spy_0777 M5005_Spy_0778   msrB FALSE 0.079 186.000 0.000 1.000   NA
 923062 923063 M5005_Spy_0778 M5005_Spy_0779 msrB   FALSE 0.169 115.000 0.000 1.000   NA
 923063 923064 M5005_Spy_0779 M5005_Spy_0780     FALSE 0.065 207.000 0.000 1.000   NA
 923064 923065 M5005_Spy_0780 M5005_Spy_0781   ptsB TRUE 0.998 19.000 0.786 0.020 Y NA
 923065 923066 M5005_Spy_0781 M5005_Spy_0782 ptsB ptsC TRUE 0.998 17.000 0.778 0.023 Y NA
 923066 923067 M5005_Spy_0782 M5005_Spy_0783 ptsC ptsD TRUE 0.999 -3.000 0.778 0.023 Y NA
 923067 923068 M5005_Spy_0783 M5005_Spy_0784 ptsD   TRUE 0.767 136.000 0.222 0.056 N NA
 923068 923069 M5005_Spy_0784 M5005_Spy_0785     TRUE 0.998 4.000 0.500 0.013 Y NA
 923069 923070 M5005_Spy_0785 M5005_Spy_0786     TRUE 0.988 -6.000 0.571 1.000 N NA
 923070 923071 M5005_Spy_0786 M5005_Spy_0787     FALSE 0.158 97.000 0.000 NA   NA
 923071 923072 M5005_Spy_0787 M5005_Spy_0788     FALSE 0.020 335.000 0.000 NA   NA
 923072 923073 M5005_Spy_0788 M5005_Spy_0789     TRUE 0.696 16.000 0.000 1.000   NA
 923073 923074 M5005_Spy_0789 M5005_Spy_0790   gabD TRUE 0.730 95.000 0.044 0.046   NA
 923074 923075 M5005_Spy_0790 M5005_Spy_0791 gabD uvrC FALSE 0.157 102.000 0.000 1.000 N NA
 923075 923076 M5005_Spy_0791 M5005_Spy_0792 uvrC   FALSE 0.133 185.000 0.004 1.000 N NA
 923076 923077 M5005_Spy_0792 M5005_Spy_0793     TRUE 0.465 125.000 0.179 1.000 N NA
 923079 923080 M5005_Spy_0795 M5005_Spy_0796 rplJ rplL TRUE 0.991 65.000 0.884 0.027 Y NA
 923080 923081 M5005_Spy_0796 M5005_Spy_0797 rplL   FALSE 0.015 396.000 0.000 NA   NA
 923081 923082 M5005_Spy_0797 M5005_Spy_0798     TRUE 0.802 -6.000 0.000 NA   NA
 923082 923083 M5005_Spy_0798 M5005_Spy_0799     TRUE 0.791 -21.000 0.000 NA   NA
 923083 923084 M5005_Spy_0799 M5005_Spy_0800     FALSE 0.262 59.000 0.000 NA   NA
 923084 923085 M5005_Spy_0800 M5005_Spy_0801     FALSE 0.269 58.000 0.000 NA   NA
 923085 923086 M5005_Spy_0801 M5005_Spy_0802     FALSE 0.124 133.000 0.000 NA   NA
 923086 923087 M5005_Spy_0802 M5005_Spy_0803   srtI FALSE 0.030 265.000 0.000 NA   NA
 923087 923088 M5005_Spy_0803 M5005_Spy_0804 srtI srtR FALSE 0.105 151.000 0.000 NA   NA
 923088 923089 M5005_Spy_0804 M5005_Spy_0805 srtR srtK TRUE 0.999 -7.000 0.741 0.013 Y NA
 923089 923090 M5005_Spy_0805 M5005_Spy_0806 srtK srtA FALSE 0.134 148.000 0.000 1.000   NA
 923090 923091 M5005_Spy_0806 M5005_Spy_0807 srtA srtT FALSE 0.169 115.000 0.000 1.000   NA
 923091 923092 M5005_Spy_0807 M5005_Spy_0808 srtT srtF TRUE 0.685 82.000 0.000 0.024   NA
 923092 923093 M5005_Spy_0808 M5005_Spy_0809 srtF srtE TRUE 0.705 6.000 0.000 NA   NA
 923093 923094 M5005_Spy_0809 M5005_Spy_0810 srtE srtG TRUE 0.976 3.000 0.490 NA   NA
 923094 923095 M5005_Spy_0810 M5005_Spy_0811 srtG   FALSE 0.062 192.000 0.000 NA   NA
 923097 923098 M5005_Spy_0813 M5005_Spy_0814     TRUE 0.589 22.000 0.000 NA   NA
 923098 923099 M5005_Spy_0814 M5005_Spy_0815     FALSE 0.210 73.000 0.000 NA   NA
 923099 923100 M5005_Spy_0815 M5005_Spy_0816     TRUE 0.867 31.000 0.000 0.068   NA
 923100 923101 M5005_Spy_0816 M5005_Spy_0817   dacA1 FALSE 0.099 170.000 0.000 1.000   NA
 923103 923104 M5005_Spy_0819 M5005_Spy_0820   folC.1 FALSE 0.169 89.000 0.000 NA   NA
 923104 923105 M5005_Spy_0820 M5005_Spy_0821 folC.1 folE TRUE 0.858 47.000 0.057 1.000 Y NA
 923105 923106 M5005_Spy_0821 M5005_Spy_0822 folE folP TRUE 0.965 9.000 0.073 1.000 Y NA
 923106 923107 M5005_Spy_0822 M5005_Spy_0823 folP folQ TRUE 0.967 7.000 0.094 1.000 Y NA
 923107 923108 M5005_Spy_0823 M5005_Spy_0824 folQ folK TRUE 0.982 -3.000 0.142 1.000 Y NA
 923108 923109 M5005_Spy_0824 M5005_Spy_0825 folK murB FALSE 0.234 150.000 0.010 1.000 N NA
 923109 923110 M5005_Spy_0825 M5005_Spy_0826 murB potA TRUE 0.644 46.000 0.041 1.000 N NA
 923110 923111 M5005_Spy_0826 M5005_Spy_0827 potA potB TRUE 0.999 -16.000 0.928 0.036 Y NA
 923111 923112 M5005_Spy_0827 M5005_Spy_0828 potB potC TRUE 0.998 -3.000 0.492 0.036 Y NA
 923112 923113 M5005_Spy_0828 M5005_Spy_0829 potC   TRUE 0.997 -7.000 0.253 0.036 Y NA
 923114 923115 M5005_Spy_0830 M5005_Spy_0831 dpiA dpiB TRUE 0.983 -19.000 0.154 1.000 Y NA
 923116 923117 M5005_Spy_0832 M5005_Spy_0833 malP   TRUE 0.971 31.000 0.432 1.000 Y NA
 923119 923120 M5005_Spy_0835 M5005_Spy_0836     TRUE 0.990 -57.000 0.035 0.002   NA
 923120 923121 M5005_Spy_0836 M5005_Spy_0837     FALSE 0.088 178.000 0.000 1.000   NA
 923121 923122 M5005_Spy_0837 M5005_Spy_0838     FALSE 0.261 163.000 0.071 1.000 N NA
 923122 923123 M5005_Spy_0838 M5005_Spy_0839     FALSE 0.215 180.000 0.071 NA   NA
 923123 923124 M5005_Spy_0839 M5005_Spy_0840   radC TRUE 0.611 49.000 0.046 NA   NA
 923125 923126 M5005_Spy_0841 M5005_Spy_0842     TRUE 0.984 10.000 0.714 1.000   NA
 923126 923127 M5005_Spy_0842 M5005_Spy_0843     FALSE 0.120 252.000 0.083 NA   NA
 923127 923128 M5005_Spy_0843 M5005_Spy_0844   nifS2 TRUE 0.956 -10.000 0.166 NA   NA
 923128 923129 M5005_Spy_0844 M5005_Spy_0845 nifS2   TRUE 0.980 -3.000 0.089 1.000 Y NA
 923129 923130 M5005_Spy_0845 M5005_Spy_0846     FALSE 0.417 140.000 0.145 1.000   NA
 923131 923132 M5005_Spy_0847 M5005_Spy_0848     TRUE 0.991 -25.000 0.725 1.000   NA
 923132 923133 M5005_Spy_0848 M5005_Spy_0849     TRUE 0.950 -3.000 0.150 1.000 N NA
 923133 923134 M5005_Spy_0849 M5005_Spy_0850   pta TRUE 0.912 4.000 0.067 1.000   NA
 923134 923135 M5005_Spy_0850 M5005_Spy_0851 pta   TRUE 0.982 -3.000 0.031 0.046   NA
 923135 923136 M5005_Spy_0851 M5005_Spy_0852     TRUE 0.671 127.000 0.031 0.046   NA
 923136 923137 M5005_Spy_0852 M5005_Spy_0853     TRUE 0.916 -3.000 0.018 NA   NA
 923139 923140 M5005_Spy_0855 M5005_Spy_0856 proV   TRUE 0.980 -7.000 0.382 1.000 N NA
 923140 923141 M5005_Spy_0856 M5005_Spy_0857   guaC FALSE 0.029 278.000 0.000 1.000 N NA
 923141 923142 M5005_Spy_0857 M5005_Spy_0858 guaC xpt FALSE 0.175 305.000 0.009 1.000 Y NA
 923142 923143 M5005_Spy_0858 M5005_Spy_0859 xpt   TRUE 0.973 0.000 0.046 1.000 Y NA
 923144 923145 M5005_Spy_0860 M5005_Spy_0861 apbE   TRUE 0.737 53.000 0.189 1.000   NA
 923146 923147 M5005_Spy_0862 M5005_Spy_0863 tdk2 prfA TRUE 0.737 35.000 0.062 1.000 N NA
 923147 923148 M5005_Spy_0863 M5005_Spy_0864 prfA hemK TRUE 0.976 0.000 0.084 1.000 Y NA
 923148 923149 M5005_Spy_0864 M5005_Spy_0865 hemK   TRUE 0.974 -16.000 0.029 NA Y NA
 923149 923150 M5005_Spy_0865 M5005_Spy_0866     TRUE 0.818 18.000 0.012 NA   NA
 923150 923151 M5005_Spy_0866 M5005_Spy_0867   glyA TRUE 0.938 -10.000 0.056 1.000   NA
 923151 923152 M5005_Spy_0867 M5005_Spy_0868 glyA   TRUE 0.701 7.000 0.000 NA   NA
 923152 923153 M5005_Spy_0868 M5005_Spy_0869     TRUE 0.751 1.000 0.000 NA   NA
 923153 923154 M5005_Spy_0869 M5005_Spy_0870     TRUE 0.871 10.000 0.035 NA   NA
 923154 923155 M5005_Spy_0870 M5005_Spy_0871     TRUE 0.999 -3.000 0.895 0.007 Y NA
 923155 923156 M5005_Spy_0871 M5005_Spy_0872   nox FALSE 0.015 541.000 0.000 1.000   NA
 923158 923159 M5005_Spy_0874 M5005_Spy_0875 gyrA   TRUE 0.785 20.000 0.013 NA N NA
 923159 923160 M5005_Spy_0875 M5005_Spy_0876     FALSE 0.399 80.000 0.039 NA N NA
 923160 923161 M5005_Spy_0876 M5005_Spy_0877     FALSE 0.013 487.000 0.000 NA   NA
 923161 923162 M5005_Spy_0877 M5005_Spy_0878     TRUE 0.699 8.000 0.000 NA   NA
 923163 923164 M5005_Spy_0879 M5005_Spy_0880     FALSE 0.446 117.000 0.135 1.000   NA
 923164 923165 M5005_Spy_0880 M5005_Spy_0881     TRUE 0.954 -3.000 0.146 1.000   NA
 923166 923167 M5005_Spy_0882 M5005_Spy_0883     TRUE 0.956 -10.000 0.148 1.000   NA
 923167 923168 M5005_Spy_0883 M5005_Spy_0884   smf TRUE 0.767 65.000 0.037 1.000 Y NA
 923168 923169 M5005_Spy_0884 M5005_Spy_0885 smf   TRUE 0.788 107.000 0.238 1.000 Y NA
 923170 923171 M5005_Spy_0886 M5005_Spy_0887     TRUE 0.701 7.000 0.000 NA   NA
 923171 923172 M5005_Spy_0887 M5005_Spy_0888     FALSE 0.113 146.000 0.000 NA   NA
 923173 923174 M5005_Spy_0889 M5005_Spy_0890   ddh TRUE 0.909 15.000 0.158 NA   NA
 923174 923175 M5005_Spy_0890 M5005_Spy_0891 ddh satD FALSE 0.372 105.000 0.056 NA   NA
 923175 923176 M5005_Spy_0891 M5005_Spy_0892 satD satE TRUE 0.970 -7.000 0.250 NA   NA
 923176 923177 M5005_Spy_0892 M5005_Spy_0893 satE gid FALSE 0.217 151.000 0.008 NA   NA
 923177 923178 M5005_Spy_0893 M5005_Spy_0894 gid oadA2 FALSE 0.198 153.000 0.005 1.000 N NA
 923178 923179 M5005_Spy_0894 M5005_Spy_0895 oadA2   TRUE 0.830 43.000 0.250 NA   NA
 923179 923180 M5005_Spy_0895 M5005_Spy_0896     TRUE 0.982 0.000 0.500 NA   NA
 923180 923181 M5005_Spy_0896 M5005_Spy_0897     TRUE 0.885 10.000 0.062 1.000 N NA
 923182 923183 M5005_Spy_0898 M5005_Spy_0899   citG TRUE 0.991 -7.000 0.700 1.000 N NA
 923183 923184 M5005_Spy_0899 M5005_Spy_0900 citG   TRUE 0.558 158.000 0.400 1.000 N NA
 923185 923186 M5005_Spy_0901 M5005_Spy_0902     TRUE 0.602 54.000 0.077 NA   NA
 923186 923187 M5005_Spy_0902 M5005_Spy_0903   oadB TRUE 0.943 45.000 0.103 0.004 N NA
 923187 923188 M5005_Spy_0903 M5005_Spy_0904 oadB   TRUE 0.991 18.000 0.273 0.002   NA
 923188 923189 M5005_Spy_0904 M5005_Spy_0905   citD TRUE 0.837 36.000 0.192 1.000   NA
 923189 923190 M5005_Spy_0905 M5005_Spy_0906 citD citE TRUE 0.990 18.000 0.284 0.002 N NA
 923190 923191 M5005_Spy_0906 M5005_Spy_0907 citE citF TRUE 0.990 3.000 0.119 0.001 N NA
 923191 923192 M5005_Spy_0907 M5005_Spy_0908 citF citX TRUE 0.942 -70.000 0.138 1.000 N NA
 923192 923193 M5005_Spy_0908 M5005_Spy_0909 citX oadA1 TRUE 0.894 15.000 0.123 1.000 N NA
 923194 923195 M5005_Spy_0910 M5005_Spy_0911 citC   FALSE 0.201 89.000 0.000 1.000   NA
 923199 923200 M5005_Spy_0915 M5005_Spy_0916 ffh ylxM TRUE 0.914 15.000 0.151 1.000   NA
 923200 923201 M5005_Spy_0916 M5005_Spy_0917 ylxM   TRUE 0.754 89.000 0.032 0.040   NA
 923201 923202 M5005_Spy_0917 M5005_Spy_0918     FALSE 0.427 83.000 0.057 NA   NA
 923204 923205 M5005_Spy_0920 M5005_Spy_0921     FALSE 0.022 365.000 0.000 1.000   NA
 923205 923206 M5005_Spy_0921 M5005_Spy_0922   pdxK FALSE 0.304 134.000 0.040 NA   NA
 923206 923207 M5005_Spy_0922 M5005_Spy_0923 pdxK   TRUE 0.946 -22.000 0.142 NA   NA
 923209 923210 M5005_Spy_0925 M5005_Spy_0926 rnhB   FALSE 0.026 322.000 0.000 1.000   NA
 923210 923211 M5005_Spy_0926 M5005_Spy_0927   fhs.1 TRUE 0.461 85.000 0.094 1.000 N NA
 923211 923212 M5005_Spy_0927 M5005_Spy_0928 fhs.1 lplA TRUE 0.487 128.000 0.200 1.000 N NA
 923212 923213 M5005_Spy_0928 M5005_Spy_0929 lplA   TRUE 0.810 47.000 0.250 1.000 N NA
 923213 923214 M5005_Spy_0929 M5005_Spy_0930     TRUE 0.973 -7.000 0.286 NA   NA
 923214 923215 M5005_Spy_0930 M5005_Spy_0931     TRUE 0.943 -7.000 0.107 NA   NA
 923215 923216 M5005_Spy_0931 M5005_Spy_0932     TRUE 0.922 42.000 0.571 NA N NA
 923216 923217 M5005_Spy_0932 M5005_Spy_0933     TRUE 0.978 -3.000 0.100 NA Y NA
 923217 923218 M5005_Spy_0933 M5005_Spy_0934     TRUE 0.918 -3.000 0.019 1.000 N NA
 923219 923220 M5005_Spy_0935 M5005_Spy_0936 dpfB dfp TRUE 0.903 -7.000 0.002 1.000   NA
 923220 923221 M5005_Spy_0936 M5005_Spy_0937 dfp   TRUE 0.514 58.000 0.019 NA   NA
 923221 923222 M5005_Spy_0937 M5005_Spy_0938   pgmA FALSE 0.243 176.000 0.098 NA   NA
 923223 923224 M5005_Spy_0939 M5005_Spy_0940     TRUE 0.996 2.000 0.720 0.036   NA
 923224 923225 M5005_Spy_0940 M5005_Spy_0941     TRUE 0.984 -7.000 0.438 1.000   NA
 923225 923226 M5005_Spy_0941 M5005_Spy_0942     FALSE 0.351 121.000 0.036 1.000   NA
 923226 923227 M5005_Spy_0942 M5005_Spy_0943   cdd TRUE 0.659 94.000 0.300 1.000   NA
 923227 923228 M5005_Spy_0943 M5005_Spy_0944 cdd   FALSE 0.011 659.000 0.000 1.000 N NA
 923229 923230 M5005_Spy_0945 M5005_Spy_0946 coaA rpsT FALSE 0.439 69.000 0.014 1.000 N NA
 923231 923232 M5005_Spy_0947 M5005_Spy_0948 ciaH ciaR TRUE 0.996 -7.000 0.606 1.000 Y NA
 923232 923233 M5005_Spy_0948 M5005_Spy_0949 ciaR pepN FALSE 0.064 346.000 0.061 1.000 N NA
 923233 923234 M5005_Spy_0949 M5005_Spy_0950 pepN phoU FALSE 0.153 205.000 0.067 NA N NA
 923234 923235 M5005_Spy_0950 M5005_Spy_0951 phoU pstB TRUE 0.903 68.000 0.413 NA Y NA
 923235 923236 M5005_Spy_0951 M5005_Spy_0952 pstB pstB2 TRUE 0.998 13.000 0.542 0.001 Y NA
 923236 923237 M5005_Spy_0952 M5005_Spy_0953 pstB2 pstA TRUE 0.998 16.000 0.490 0.002 Y NA
 923237 923238 M5005_Spy_0953 M5005_Spy_0954 pstA pstC TRUE 1.000 -10.000 0.907 0.002 Y NA
 923238 923239 M5005_Spy_0954 M5005_Spy_0955 pstC pstS TRUE 0.739 127.000 0.206 1.000 Y NA
 923239 923240 M5005_Spy_0955 M5005_Spy_0956 pstS   TRUE 0.538 139.000 0.303 NA N NA
 923240 923241 M5005_Spy_0956 M5005_Spy_0957     TRUE 0.947 3.000 0.229 NA N NA
 923241 923242 M5005_Spy_0957 M5005_Spy_0958     TRUE 0.977 -10.000 0.337 NA   NA
 923242 923243 M5005_Spy_0958 M5005_Spy_0959     TRUE 0.940 2.000 0.169 NA   NA
 923243 923244 M5005_Spy_0959 M5005_Spy_0960   mreA TRUE 0.640 43.000 0.017 1.000 N NA
 923244 923245 M5005_Spy_0960 M5005_Spy_0961 mreA truB TRUE 0.907 29.000 0.308 1.000 N NA
 923245 923246 M5005_Spy_0961 M5005_Spy_0962 truB   FALSE 0.304 116.000 0.014 NA   NA
 923246 923247 M5005_Spy_0962 M5005_Spy_0963     FALSE 0.373 97.000 0.045 NA   NA
 923247 923248 M5005_Spy_0963 M5005_Spy_0964     TRUE 0.874 11.000 0.045 NA   NA
 923248 923249 M5005_Spy_0964 M5005_Spy_0965     TRUE 0.483 92.000 0.121 1.000   NA
 923249 923250 M5005_Spy_0965 M5005_Spy_0966     TRUE 0.959 20.000 0.091 0.073   NA
 923250 923251 M5005_Spy_0966 M5005_Spy_0967     TRUE 0.966 15.000 0.438 1.000   NA
 923253 923254 M5005_Spy_0969 M5005_Spy_0970     TRUE 0.730 3.000 0.000 NA   NA
 923254 923255 M5005_Spy_0970 M5005_Spy_0971     FALSE 0.417 163.000 0.238 NA   NA
 923255 923256 M5005_Spy_0971 M5005_Spy_0972     TRUE 0.978 11.000 0.600 NA   NA
 923256 923257 M5005_Spy_0972 M5005_Spy_0973     TRUE 0.933 41.000 0.600 NA   NA
 923257 923258 M5005_Spy_0973 M5005_Spy_0974     TRUE 0.878 13.000 0.060 NA   NA
 923258 923259 M5005_Spy_0974 M5005_Spy_0975     TRUE 0.911 11.000 0.143 NA   NA
 923259 923260 M5005_Spy_0975 M5005_Spy_0976     TRUE 0.791 61.000 0.357 NA   NA
 923260 923261 M5005_Spy_0976 M5005_Spy_0977   pcrA FALSE 0.018 406.000 0.000 1.000   NA
 923261 923262 M5005_Spy_0977 M5005_Spy_0979 pcrA   FALSE 0.017 368.000 0.000 NA   NA
 923263 923264 M5005_Spy_0978 M5005_Spy_0980     TRUE 0.665 120.000 0.060 0.073 N NA
 923265 923266 M5005_Spy_0981 M5005_Spy_0982 cfa   FALSE 0.017 370.000 0.000 NA   NA
 923266 923267 M5005_Spy_0982 M5005_Spy_0983     TRUE 0.966 16.000 0.154 1.000 Y NA
 923267 923268 M5005_Spy_0983 M5005_Spy_0984     TRUE 0.968 10.000 0.130 1.000 Y NA
 923268 923269 M5005_Spy_0984 M5005_Spy_0985     FALSE 0.337 106.000 0.018 1.000 N NA
 923269 923270 M5005_Spy_0985 M5005_Spy_0986   glmS FALSE 0.130 196.000 0.008 1.000 N NA
 923270 923271 M5005_Spy_0986 M5005_Spy_0987 glmS sipC FALSE 0.172 176.000 0.011 1.000 N NA
 923271 923272 M5005_Spy_0987 M5005_Spy_0988 sipC pyk FALSE 0.153 218.000 0.072 1.000 N NA
 923272 923273 M5005_Spy_0988 M5005_Spy_0989 pyk pfk TRUE 0.974 63.000 0.261 0.006 Y NA
 923273 923274 M5005_Spy_0989 M5005_Spy_0990 pfk dnaE TRUE 0.491 80.000 0.098 1.000 N NA
 923275 923276 M5005_Spy_0991 M5005_Spy_0992     TRUE 0.977 0.000 0.412 1.000 N NA
 923276 923277 M5005_Spy_0992 M5005_Spy_0993     TRUE 0.970 10.000 0.471 NA   NA
 923278 923279 M5005_Spy_0994 M5005_Spy_0995     FALSE 0.011 591.000 0.000 NA   NA
 923281 923282 M5005_Spy_0997 M5005_Spy_0998     TRUE 0.767 0.000 0.000 NA   NA
 923282 923283 M5005_Spy_0998 M5005_Spy_0999     TRUE 0.687 10.000 0.000 NA   NA
 923283 923284 M5005_Spy_0999 M5005_Spy_1000     TRUE 0.685 11.000 0.000 NA   NA
 923284 923285 M5005_Spy_1000 M5005_Spy_1001     TRUE 0.683 12.000 0.000 NA   NA
 923285 923286 M5005_Spy_1001 M5005_Spy_1002     TRUE 0.741 2.000 0.000 NA   NA
 923286 923287 M5005_Spy_1002 M5005_Spy_1003     TRUE 0.988 0.000 0.667 NA   NA
 923287 923288 M5005_Spy_1003 M5005_Spy_1004     TRUE 0.989 -31.000 0.667 NA   NA
 923288 923289 M5005_Spy_1004 M5005_Spy_1005     TRUE 0.994 -28.000 1.000 NA   NA
 923289 923290 M5005_Spy_1005 M5005_Spy_1006     TRUE 0.952 11.000 0.300 NA   NA
 923290 923291 M5005_Spy_1006 M5005_Spy_1007     FALSE 0.139 116.000 0.000 NA   NA
 923291 923292 M5005_Spy_1007 M5005_Spy_1008     TRUE 0.971 1.000 0.333 1.000   NA
 923292 923293 M5005_Spy_1008 M5005_Spy_1009     TRUE 0.929 1.000 0.125 NA   NA
 923293 923294 M5005_Spy_1009 M5005_Spy_1010     TRUE 0.989 -7.000 0.625 NA   NA
 923294 923295 M5005_Spy_1010 M5005_Spy_1011     TRUE 0.994 -27.000 0.929 NA   NA
 923295 923296 M5005_Spy_1011 M5005_Spy_1012     TRUE 0.904 13.000 0.134 NA   NA
 923296 923297 M5005_Spy_1012 M5005_Spy_1013     TRUE 0.875 12.000 0.052 NA   NA
 923297 923298 M5005_Spy_1013 M5005_Spy_1014     TRUE 0.989 2.000 0.800 NA   NA
 923298 923299 M5005_Spy_1014 M5005_Spy_1015     TRUE 0.794 -3.000 0.000 NA   NA
 923299 923300 M5005_Spy_1015 M5005_Spy_1016     TRUE 0.794 -3.000 0.000 NA   NA
 923300 923301 M5005_Spy_1016 M5005_Spy_1017     TRUE 0.802 14.000 0.002 NA   NA
 923301 923302 M5005_Spy_1017 M5005_Spy_1018     TRUE 0.809 13.000 0.002 NA   NA
 923302 923303 M5005_Spy_1018 M5005_Spy_1019     TRUE 0.952 19.000 0.400 NA   NA
 923303 923304 M5005_Spy_1019 M5005_Spy_1020     FALSE 0.037 245.000 0.000 NA   NA
 923304 923305 M5005_Spy_1020 M5005_Spy_1021     TRUE 0.701 7.000 0.000 NA   NA
 923305 923306 M5005_Spy_1021 M5005_Spy_1022     TRUE 0.961 -31.000 0.214 NA   NA
 923306 923307 M5005_Spy_1022 M5005_Spy_1023     TRUE 0.933 0.000 0.118 NA   NA
 923307 923308 M5005_Spy_1023 M5005_Spy_1024     TRUE 0.950 -10.000 0.118 1.000   NA
 923308 923309 M5005_Spy_1024 M5005_Spy_1025     FALSE 0.011 610.000 0.000 NA   NA
 923309 923310 M5005_Spy_1025 M5005_Spy_1026     FALSE 0.027 286.000 0.000 NA   NA
 923310 923311 M5005_Spy_1026 M5005_Spy_1027     TRUE 0.984 -3.000 0.500 NA   NA
 923311 923312 M5005_Spy_1027 M5005_Spy_1028     TRUE 0.730 3.000 0.000 NA   NA
 923312 923313 M5005_Spy_1028 M5005_Spy_1029     TRUE 0.741 2.000 0.000 NA   NA
 923313 923314 M5005_Spy_1029 M5005_Spy_1030     TRUE 0.794 -3.000 0.000 NA   NA
 923314 923315 M5005_Spy_1030 M5005_Spy_1031     TRUE 0.787 -27.000 0.000 NA   NA
 923315 923316 M5005_Spy_1031 M5005_Spy_1032     TRUE 0.794 -3.000 0.000 NA   NA
 923316 923317 M5005_Spy_1032 M5005_Spy_1033     TRUE 0.794 -3.000 0.000 NA   NA
 923317 923318 M5005_Spy_1033 M5005_Spy_1034     TRUE 0.917 -3.000 0.018 NA   NA
 923318 923319 M5005_Spy_1034 M5005_Spy_1035     TRUE 0.767 0.000 0.000 NA   NA
 923319 923320 M5005_Spy_1035 M5005_Spy_1036   ssb2 TRUE 0.705 6.000 0.000 NA   NA
 923320 923321 M5005_Spy_1036 M5005_Spy_1037 ssb2 ssb1 TRUE 0.946 -7.000 0.125 NA   NA
 923321 923322 M5005_Spy_1037 M5005_Spy_1038 ssb1   TRUE 0.929 1.000 0.125 NA   NA
 923322 923323 M5005_Spy_1038 M5005_Spy_1039     TRUE 0.926 22.000 0.286 NA   NA
 923323 923324 M5005_Spy_1039 M5005_Spy_1040     TRUE 0.989 -19.000 0.667 NA   NA
 923324 923325 M5005_Spy_1040 M5005_Spy_1041     TRUE 0.981 13.000 0.667 NA   NA
 923325 923326 M5005_Spy_1041 M5005_Spy_1042     TRUE 0.990 -9.000 0.667 NA   NA
 923326 923327 M5005_Spy_1042 M5005_Spy_1043     TRUE 0.990 -13.000 0.667 NA   NA
 923334 923335 M5005_Spy_1050 M5005_Spy_1051     FALSE 0.433 36.000 0.000 NA   NA
 923335 923336 M5005_Spy_1051 M5005_Spy_1052   int.1 FALSE 0.134 121.000 0.000 NA   NA
 923336 923337 M5005_Spy_1052 M5005_Spy_1053 int.1   FALSE 0.125 132.000 0.000 NA   NA
 923337 923338 M5005_Spy_1053 M5005_Spy_1054     FALSE 0.137 118.000 0.000 NA   NA
 923339 923340 M5005_Spy_1055 M5005_Spy_1056 glgP malM TRUE 0.987 35.000 0.289 0.023 Y NA
 923340 923341 M5005_Spy_1056 M5005_Spy_1057 malM malR TRUE 0.748 115.000 0.538 1.000 N NA
 923342 923343 M5005_Spy_1058 M5005_Spy_1059 malE malF TRUE 0.733 505.000 0.690 0.035 Y NA
 923343 923344 M5005_Spy_1059 M5005_Spy_1060 malF malG TRUE 0.999 0.000 0.793 0.035 Y NA
 923344 923345 M5005_Spy_1060 M5005_Spy_1061 malG   TRUE 0.649 155.000 0.069 0.038   NA
 923346 923347 M5005_Spy_1062 M5005_Spy_1063 malA malD TRUE 0.901 22.000 0.200 NA   NA
 923347 923348 M5005_Spy_1063 M5005_Spy_1064 malD malC TRUE 0.999 -3.000 0.714 0.035 Y NA
 923348 923349 M5005_Spy_1064 M5005_Spy_1065 malC amyA TRUE 0.751 75.000 0.067 1.000 Y NA
 923349 923350 M5005_Spy_1065 M5005_Spy_1066 amyA amyB TRUE 0.984 26.000 0.024 0.008 Y NA
 923350 923351 M5005_Spy_1066 M5005_Spy_1067 amyB malX TRUE 0.521 166.000 0.065 1.000 Y NA
 923353 923354 M5005_Spy_1069 M5005_Spy_1070   dltD TRUE 0.727 31.000 0.042 NA N NA
 923354 923355 M5005_Spy_1070 M5005_Spy_1071 dltD   TRUE 0.981 -7.000 0.409 NA   NA
 923355 923356 M5005_Spy_1071 M5005_Spy_1072     TRUE 0.953 18.000 0.387 NA   NA
 923356 923357 M5005_Spy_1072 M5005_Spy_1073   dltA TRUE 0.980 -3.000 0.435 NA N NA
 923357 923358 M5005_Spy_1073 M5005_Spy_1074 dltA   TRUE 0.975 12.000 0.549 NA   NA
 923358 923359 M5005_Spy_1074 M5005_Spy_1075   uvrB FALSE 0.031 264.000 0.000 NA   NA
 923360 923361 M5005_Spy_1076 M5005_Spy_1077 glnH glnQ.2 TRUE 0.989 0.000 0.326 1.000 Y NA
 923362 923363 M5005_Spy_1078 M5005_Spy_1079     TRUE 0.957 -3.000 0.182 NA   NA
 923363 923364 M5005_Spy_1079 M5005_Spy_1080     FALSE 0.393 178.000 0.273 NA   NA
 923364 923365 M5005_Spy_1080 M5005_Spy_1081     TRUE 0.984 -3.000 0.500 NA   NA
 923365 923366 M5005_Spy_1081 M5005_Spy_1082     TRUE 0.998 3.000 0.500 0.014 Y NA
 923366 923367 M5005_Spy_1082 M5005_Spy_1083     TRUE 0.965 23.000 0.064 0.014 N NA
 923367 923368 M5005_Spy_1083 M5005_Spy_1084     FALSE 0.410 106.000 0.064 1.000   NA
 923368 923369 M5005_Spy_1084 M5005_Spy_1085   bglA.2 TRUE 0.976 9.000 0.500 1.000   NA
 923371 923372 M5005_Spy_1087 M5005_Spy_1088   obgE FALSE 0.409 69.000 0.009 NA   NA
 923372 923373 M5005_Spy_1088 M5005_Spy_1089 obgE   FALSE 0.455 63.000 0.011 NA   NA
 923374 923375 M5005_Spy_1090 M5005_Spy_1091     TRUE 0.609 173.000 0.000 0.064 Y NA
 923380 923381 M5005_Spy_1096 M5005_Spy_1097     FALSE 0.177 85.000 0.000 NA   NA
 923381 923382 M5005_Spy_1097 M5005_Spy_1098     FALSE 0.029 305.000 0.000 1.000   NA
 923382 923383 M5005_Spy_1098 M5005_Spy_1099     TRUE 0.472 82.000 0.093 1.000 N NA
 923383 923384 M5005_Spy_1099 M5005_Spy_1100   aroK FALSE 0.186 208.000 0.111 1.000 N NA
 923384 923385 M5005_Spy_1100 M5005_Spy_1101 aroK   TRUE 0.975 -7.000 0.012 1.000 Y NA
 923385 923386 M5005_Spy_1101 M5005_Spy_1102     FALSE 0.301 102.000 0.003 1.000   NA
 923386 923387 M5005_Spy_1102 M5005_Spy_1103   map TRUE 0.973 2.000 0.373 1.000   NA
 923387 923388 M5005_Spy_1103 M5005_Spy_1104 map   TRUE 0.932 16.000 0.235 1.000 N NA
 923388 923389 M5005_Spy_1104 M5005_Spy_1105     TRUE 0.961 9.000 0.342 1.000 N NA
 923389 923390 M5005_Spy_1105 M5005_Spy_1106   grab FALSE 0.048 238.000 0.000 1.000   NA
 923390 923391 M5005_Spy_1106 M5005_Spy_1107 grab murZ FALSE 0.023 358.000 0.000 1.000   NA
 923391 923392 M5005_Spy_1107 M5005_Spy_1108 murZ metK2 FALSE 0.200 174.000 0.026 1.000 N NA
 923392 923393 M5005_Spy_1108 M5005_Spy_1109 metK2 inlA FALSE 0.015 537.000 0.000 1.000   NA
 923395 923396 M5005_Spy_1111 M5005_Spy_1112     TRUE 0.935 -10.000 0.067 NA   NA
 923396 923397 M5005_Spy_1112 M5005_Spy_1113     TRUE 0.899 0.000 0.030 NA N NA
 923399 923400 M5005_Spy_1115 M5005_Spy_1116   udk FALSE 0.370 80.000 0.010 NA   NA
 923402 923403 M5005_Spy_1118 M5005_Spy_1119   gapN FALSE 0.365 95.000 0.028 1.000 N NA
 923403 923404 M5005_Spy_1119 M5005_Spy_1120 gapN pstI FALSE 0.182 185.000 0.035 1.000 N NA
 923404 923405 M5005_Spy_1120 M5005_Spy_1121 pstI ptsH TRUE 0.996 5.000 0.240 0.014 Y NA
 923406 923407 M5005_Spy_1122 M5005_Spy_1123 nrdH nrdE.2 TRUE 0.967 20.000 0.562 1.000 N NA
 923407 923408 M5005_Spy_1123 M5005_Spy_1124 nrdE.2 nrdF.2 TRUE 0.840 333.000 0.500 0.002 Y NA
 923408 923409 M5005_Spy_1124 M5005_Spy_1125 nrdF.2   TRUE 0.935 -25.000 0.083 1.000 N NA
 923409 923410 M5005_Spy_1125 M5005_Spy_1126     FALSE 0.059 216.000 0.000 1.000   NA
 923410 923411 M5005_Spy_1126 M5005_Spy_1127     TRUE 0.464 33.000 0.000 NA   NA
 923411 923412 M5005_Spy_1127 M5005_Spy_1128     FALSE 0.022 313.000 0.000 NA   NA
 923413 923414 M5005_Spy_1129 M5005_Spy_1130     TRUE 0.858 19.000 0.077 NA   NA
 923414 923415 M5005_Spy_1130 M5005_Spy_1131     TRUE 0.977 -3.000 0.362 NA   NA
 923415 923416 M5005_Spy_1131 M5005_Spy_1132   alaS FALSE 0.019 355.000 0.000 1.000 N NA
 923416 923417 M5005_Spy_1132 M5005_Spy_1133 alaS surA FALSE 0.016 387.000 0.000 1.000 N NA
 923417 923418 M5005_Spy_1133 M5005_Spy_1134 surA   TRUE 0.493 63.000 0.012 1.000   NA
 923418 923419 M5005_Spy_1134 M5005_Spy_1135     TRUE 0.468 66.000 0.012 1.000   NA
 923419 923420 M5005_Spy_1135 M5005_Spy_1136   pepB FALSE 0.017 376.000 0.000 1.000 N NA
 923420 923421 M5005_Spy_1136 M5005_Spy_1137 pepB   TRUE 0.932 13.000 0.204 NA   NA
 923421 923422 M5005_Spy_1137 M5005_Spy_1138     FALSE 0.069 295.000 0.020 NA   NA
 923422 923423 M5005_Spy_1138 M5005_Spy_1139   nagB FALSE 0.340 119.000 0.051 1.000 N NA
 923424 923425 M5005_Spy_1140 M5005_Spy_1141 queA   TRUE 0.831 7.000 0.004 NA   NA
 923426 923427 M5005_Spy_1142 M5005_Spy_1143     TRUE 0.794 -3.000 0.000 NA   NA
 923427 923428 M5005_Spy_1143 M5005_Spy_1144     TRUE 0.798 -15.000 0.000 NA   NA
 923428 923429 M5005_Spy_1144 M5005_Spy_1145   sodA FALSE 0.085 167.000 0.000 NA   NA
 923429 923430 M5005_Spy_1145 M5005_Spy_1146 sodA   FALSE 0.330 97.000 0.012 1.000 N NA
 923430 923431 M5005_Spy_1146 M5005_Spy_1147   comEC TRUE 0.620 71.000 0.163 1.000   NA
 923431 923432 M5005_Spy_1147 M5005_Spy_1148 comEC   TRUE 0.950 -19.000 0.130 1.000   NA
 923432 923433 M5005_Spy_1148 M5005_Spy_1149     FALSE 0.139 200.000 0.014 1.000 N NA
 923434 923435 M5005_Spy_1150 M5005_Spy_1151     TRUE 0.968 -10.000 0.209 1.000   NA
 923436 923437 M5005_Spy_1152 M5005_Spy_1153     TRUE 0.985 -48.000 0.000 0.001   NA
 923437 923438 M5005_Spy_1153 M5005_Spy_1154   deaD FALSE 0.284 128.000 0.007 1.000   NA
 923438 923439 M5005_Spy_1154 M5005_Spy_1155 deaD prfC FALSE 0.112 307.000 0.000 1.000 Y NA
 923439 923440 M5005_Spy_1155 M5005_Spy_1156 prfC   FALSE 0.072 248.000 0.003 NA   NA
 923440 923441 M5005_Spy_1156 M5005_Spy_1157   murF TRUE 0.470 80.000 0.078 NA   NA
 923441 923442 M5005_Spy_1157 M5005_Spy_1158 murF ddlA TRUE 0.782 191.000 0.046 0.009 Y NA
 923442 923443 M5005_Spy_1158 M5005_Spy_1159 ddlA recR FALSE 0.316 101.000 0.010 1.000 N NA
 923443 923444 M5005_Spy_1159 M5005_Spy_1160 recR   FALSE 0.350 47.000 0.000 NA   NA
 923444 923445 M5005_Spy_1160 M5005_Spy_1161     FALSE 0.012 561.000 0.000 NA   NA
 923445 923446 M5005_Spy_1161 M5005_Spy_1162     FALSE 0.378 124.000 0.105 NA   NA
 923446 923447 M5005_Spy_1162 M5005_Spy_1163     FALSE 0.288 161.000 0.107 NA   NA
 923447 923448 M5005_Spy_1163 M5005_Spy_1164   gpmA FALSE 0.338 107.000 0.012 1.000   NA
 923450 923451 M5005_Spy_1166 M5005_Spy_1167     FALSE 0.434 72.000 0.018 NA   NA
 923451 923452 M5005_Spy_1167 M5005_Spy_1168     FALSE 0.012 531.000 0.000 NA   NA
 923453 923454 M5005_Spy_1169 M5005_Spy_1170 spd3   FALSE 0.050 211.000 0.000 NA   NA
 923455 923456 M5005_Spy_1171 M5005_Spy_1172     FALSE 0.139 116.000 0.000 NA   NA
 923456 923457 M5005_Spy_1172 M5005_Spy_1173     TRUE 0.794 -3.000 0.000 NA   NA
 923457 923458 M5005_Spy_1173 M5005_Spy_1174     TRUE 0.687 10.000 0.000 NA   NA
 923458 923459 M5005_Spy_1174 M5005_Spy_1175     TRUE 0.794 -3.000 0.000 NA   NA
 923459 923460 M5005_Spy_1175 M5005_Spy_1176     TRUE 0.683 12.000 0.000 NA   NA
 923460 923461 M5005_Spy_1176 M5005_Spy_1177     TRUE 0.794 -3.000 0.000 NA   NA
 923461 923462 M5005_Spy_1177 M5005_Spy_1178     TRUE 0.958 -3.000 0.188 NA   NA
 923462 923463 M5005_Spy_1178 M5005_Spy_1179     TRUE 0.963 0.000 0.250 NA   NA
 923463 923464 M5005_Spy_1179 M5005_Spy_1180     TRUE 0.985 15.000 0.833 NA   NA
 923464 923465 M5005_Spy_1180 M5005_Spy_1181     TRUE 0.939 11.000 0.222 NA   NA
 923465 923466 M5005_Spy_1181 M5005_Spy_1182     TRUE 0.968 12.000 0.444 NA   NA
 923466 923467 M5005_Spy_1182 M5005_Spy_1183     TRUE 0.989 1.000 0.750 NA   NA
 923467 923468 M5005_Spy_1183 M5005_Spy_1184     TRUE 0.983 -7.000 0.467 NA   NA
 923468 923469 M5005_Spy_1184 M5005_Spy_1185     TRUE 0.988 -40.000 0.667 NA   NA
 923469 923470 M5005_Spy_1185 M5005_Spy_1186     TRUE 0.687 10.000 0.000 NA   NA
 923470 923471 M5005_Spy_1186 M5005_Spy_1187     TRUE 0.767 0.000 0.000 NA   NA
 923471 923472 M5005_Spy_1187 M5005_Spy_1188     TRUE 0.940 25.000 0.417 NA   NA
 923472 923473 M5005_Spy_1188 M5005_Spy_1189     TRUE 0.652 81.000 0.263 NA   NA
 923473 923474 M5005_Spy_1189 M5005_Spy_1190     FALSE 0.146 110.000 0.000 NA   NA
 923474 923475 M5005_Spy_1190 M5005_Spy_1191     FALSE 0.416 39.000 0.000 NA   NA
 923475 923476 M5005_Spy_1191 M5005_Spy_1192     TRUE 0.784 -31.000 0.000 NA   NA
 923476 923477 M5005_Spy_1192 M5005_Spy_1193     TRUE 0.794 -3.000 0.000 NA   NA
 923477 923478 M5005_Spy_1193 M5005_Spy_1194     TRUE 0.978 -7.000 0.353 NA   NA
 923478 923479 M5005_Spy_1194 M5005_Spy_1195     TRUE 0.794 -3.000 0.000 NA   NA
 923479 923480 M5005_Spy_1195 M5005_Spy_1196     FALSE 0.109 149.000 0.000 NA   NA
 923480 923481 M5005_Spy_1196 M5005_Spy_1197     FALSE 0.148 109.000 0.000 NA   NA
 923481 923482 M5005_Spy_1197 M5005_Spy_1198     FALSE 0.030 268.000 0.000 NA   NA
 923482 923483 M5005_Spy_1198 M5005_Spy_1199     TRUE 0.741 2.000 0.000 NA   NA
 923483 923484 M5005_Spy_1199 M5005_Spy_1200     FALSE 0.180 84.000 0.000 NA   NA
 923484 923485 M5005_Spy_1200 M5005_Spy_1201     TRUE 0.794 -3.000 0.000 NA   NA
 923485 923486 M5005_Spy_1201 M5005_Spy_1202     FALSE 0.150 106.000 0.000 NA   NA
 923486 923487 M5005_Spy_1202 M5005_Spy_1203     TRUE 0.687 10.000 0.000 NA   NA
 923487 923488 M5005_Spy_1203 M5005_Spy_1204     TRUE 0.997 -3.000 0.667 0.062   NA
 923488 923489 M5005_Spy_1204 M5005_Spy_1205     TRUE 0.730 3.000 0.000 NA   NA
 923489 923490 M5005_Spy_1205 M5005_Spy_1206     FALSE 0.279 56.000 0.000 NA   NA
 923490 923491 M5005_Spy_1206 M5005_Spy_1207     TRUE 0.694 9.000 0.000 NA   NA
 923491 923492 M5005_Spy_1207 M5005_Spy_1208     TRUE 0.794 -3.000 0.000 NA   NA
 923492 923493 M5005_Spy_1208 M5005_Spy_1209     TRUE 0.916 -19.000 0.018 NA   NA
 923493 923494 M5005_Spy_1209 M5005_Spy_1210     FALSE 0.267 145.000 0.018 NA   NA
 923494 923495 M5005_Spy_1210 M5005_Spy_1211     FALSE 0.155 100.000 0.000 NA   NA
 923495 923496 M5005_Spy_1211 M5005_Spy_1212   xis TRUE 0.741 2.000 0.000 NA   NA
 923496 923497 M5005_Spy_1212 M5005_Spy_1213 xis   FALSE 0.199 78.000 0.000 NA   NA
 923498 923499 M5005_Spy_1214 M5005_Spy_1215     FALSE 0.116 142.000 0.000 NA   NA
 923500 923501 M5005_Spy_1216 M5005_Spy_1217     TRUE 0.476 32.000 0.000 NA   NA
 923501 923502 M5005_Spy_1217 M5005_Spy_1218     TRUE 0.938 12.000 0.000 0.062   NA
 923503 923504 M5005_Spy_1219 M5005_Spy_1220     TRUE 0.977 4.000 0.500 NA   NA
 923504 923505 M5005_Spy_1220 M5005_Spy_1221     TRUE 0.683 12.000 0.000 NA   NA
 923505 923506 M5005_Spy_1221 M5005_Spy_1222   int.2 FALSE 0.131 124.000 0.000 NA   NA
 923507 923508 M5005_Spy_1223 M5005_Spy_1224     TRUE 0.487 99.000 0.156 NA   NA
 923508 923509 M5005_Spy_1224 M5005_Spy_1225     TRUE 0.992 -22.000 0.828 NA   NA
 923509 923510 M5005_Spy_1225 M5005_Spy_1226     TRUE 0.964 -7.000 0.203 NA   NA
 923510 923511 M5005_Spy_1226 M5005_Spy_1227     FALSE 0.048 216.000 0.000 NA   NA
 923511 923512 M5005_Spy_1227 M5005_Spy_1228   recN FALSE 0.096 172.000 0.000 1.000   NA
 923512 923513 M5005_Spy_1228 M5005_Spy_1229 recN argR1 TRUE 0.818 22.000 0.037 1.000 N NA
 923513 923514 M5005_Spy_1229 M5005_Spy_1230 argR1   TRUE 0.929 -13.000 0.048 1.000 N NA
 923514 923515 M5005_Spy_1230 M5005_Spy_1231   fps TRUE 0.933 -7.000 0.058 1.000 N NA
 923515 923516 M5005_Spy_1231 M5005_Spy_1232 fps xseB TRUE 0.930 0.000 0.100 1.000 N NA
 923516 923517 M5005_Spy_1232 M5005_Spy_1233 xseB   TRUE 0.999 -22.000 0.412 0.001 Y NA
 923517 923518 M5005_Spy_1233 M5005_Spy_1234   folD FALSE 0.264 153.000 0.045 1.000 N NA
 923518 923519 M5005_Spy_1234 M5005_Spy_1235 folD   FALSE 0.127 208.000 0.013 1.000 N NA
 923519 923520 M5005_Spy_1235 M5005_Spy_1236   phr FALSE 0.162 169.000 0.004 1.000 N NA
 923520 923521 M5005_Spy_1236 M5005_Spy_1237 phr artP FALSE 0.112 149.000 0.000 1.000 N NA
 923521 923522 M5005_Spy_1237 M5005_Spy_1238 artP artQ TRUE 0.995 0.000 0.640 1.000 Y NA
 923522 923523 M5005_Spy_1238 M5005_Spy_1239 artQ   FALSE 0.319 127.000 0.044 NA   NA
 923524 923525 M5005_Spy_1240 M5005_Spy_1241 clpE mutT FALSE 0.357 128.000 0.079 1.000 N NA
 923525 923526 M5005_Spy_1241 M5005_Spy_1242 mutT   TRUE 0.648 51.000 0.114 NA   NA
 923527 923528 M5005_Spy_1243 M5005_Spy_1244 ileS divIVAS FALSE 0.064 273.000 0.012 NA N NA
 923528 923529 M5005_Spy_1244 M5005_Spy_1245 divIVAS   TRUE 0.978 10.000 0.579 NA   NA
 923529 923530 M5005_Spy_1245 M5005_Spy_1246     TRUE 0.970 0.000 0.287 1.000   NA
 923530 923531 M5005_Spy_1246 M5005_Spy_1247     TRUE 0.965 5.000 0.370 NA   NA
 923531 923532 M5005_Spy_1247 M5005_Spy_1248     TRUE 0.953 0.000 0.194 NA   NA
 923532 923533 M5005_Spy_1248 M5005_Spy_1249   ftsZ TRUE 0.890 3.000 0.030 NA   NA
 923533 923534 M5005_Spy_1249 M5005_Spy_1250 ftsZ ftsA TRUE 0.980 24.000 0.460 1.000 Y NA
 923534 923535 M5005_Spy_1250 M5005_Spy_1251 ftsA divIB FALSE 0.367 212.000 0.389 NA N NA
 923535 923536 M5005_Spy_1251 M5005_Spy_1252 divIB murG TRUE 0.971 1.000 0.072 NA Y NA
 923536 923537 M5005_Spy_1252 M5005_Spy_1253 murG murD TRUE 0.977 -21.000 0.060 1.000 Y NA
 923537 923538 M5005_Spy_1253 M5005_Spy_1254 murD   FALSE 0.037 370.000 0.006 NA   NA
 923538 923539 M5005_Spy_1254 M5005_Spy_1255   typA FALSE 0.293 122.000 0.015 NA   NA
 923539 923540 M5005_Spy_1255 M5005_Spy_1256 typA   FALSE 0.117 183.000 0.003 NA N NA
 923540 923541 M5005_Spy_1256 M5005_Spy_1257   glcK TRUE 0.874 10.000 0.064 NA N NA
 923541 923542 M5005_Spy_1257 M5005_Spy_1258 glcK   TRUE 0.974 5.000 0.496 NA   NA
 923542 923543 M5005_Spy_1258 M5005_Spy_1259   dpr FALSE 0.308 142.000 0.058 NA   NA
 923545 923546 M5005_Spy_1261 M5005_Spy_1262     TRUE 0.876 4.000 0.016 NA   NA
 923546 923547 M5005_Spy_1262 M5005_Spy_1263     FALSE 0.025 295.000 0.000 NA   NA
 923547 923548 M5005_Spy_1263 M5005_Spy_1264     FALSE 0.455 34.000 0.000 NA   NA
 923548 923549 M5005_Spy_1264 M5005_Spy_1265     FALSE 0.162 93.000 0.000 NA   NA
 923549 923550 M5005_Spy_1265 M5005_Spy_1266     FALSE 0.022 366.000 0.000 1.000   NA
 923550 923551 M5005_Spy_1266 M5005_Spy_1267     TRUE 0.930 -13.000 0.052 1.000 N NA
 923551 923552 M5005_Spy_1267 M5005_Spy_1268     TRUE 0.979 -10.000 0.367 1.000 N NA
 923552 923553 M5005_Spy_1268 M5005_Spy_1269   asnA FALSE 0.260 123.000 0.006 1.000 N NA
 923553 923554 M5005_Spy_1269 M5005_Spy_1270 asnA arcC FALSE 0.107 313.000 0.000 1.000 Y NA
 923554 923555 M5005_Spy_1270 M5005_Spy_1271 arcC   TRUE 0.943 20.000 0.035 1.000 Y NA
 923555 923556 M5005_Spy_1271 M5005_Spy_1272     TRUE 0.902 17.000 0.140 1.000   NA
 923556 923557 M5005_Spy_1272 M5005_Spy_1273   arcB FALSE 0.284 170.000 0.104 1.000   NA
 923557 923558 M5005_Spy_1273 M5005_Spy_1274 arcB   TRUE 0.756 40.000 0.104 1.000   NA
 923558 923559 M5005_Spy_1274 M5005_Spy_1275   arcA FALSE 0.408 100.000 0.056 1.000   NA
 923559 923560 M5005_Spy_1275 M5005_Spy_1276 arcA   FALSE 0.030 274.000 0.000 1.000 N NA
 923562 923563 M5005_Spy_1278 M5005_Spy_1279     TRUE 0.831 14.000 0.009 NA   NA
 923563 923564 M5005_Spy_1279 M5005_Spy_1280     FALSE 0.414 73.000 0.007 1.000   NA
 923564 923565 M5005_Spy_1280 M5005_Spy_1281     TRUE 0.997 -3.000 0.480 0.011   NA
 923565 923566 M5005_Spy_1281 M5005_Spy_1282   msrA TRUE 0.633 88.000 0.240 1.000   NA
 923566 923567 M5005_Spy_1282 M5005_Spy_1283 msrA tlpA TRUE 0.984 43.000 0.875 1.000 Y NA
 923567 923568 M5005_Spy_1283 M5005_Spy_1284 tlpA ccdA TRUE 0.989 13.000 0.500 1.000 Y NA
 923568 923569 M5005_Spy_1284 M5005_Spy_1285 ccdA   FALSE 0.012 603.000 0.000 1.000 N NA
 11400643 923560   M5005_Spy_1276     FALSE NA 7877.000 0.000 NA   NA
 11543006 923560   M5005_Spy_1276     FALSE NA 7877.000 0.000 NA   NA
 11685398 923560   M5005_Spy_1276     FALSE NA 7877.000 0.000 NA   NA
 11400644 923560   M5005_Spy_1276     FALSE NA 7908.000 0.000 NA   NA
 11543007 923560   M5005_Spy_1276     FALSE NA 7908.000 0.000 NA   NA
 11685399 923560   M5005_Spy_1276     FALSE NA 7908.000 0.000 NA   NA
 11400645 923560   M5005_Spy_1276     FALSE NA 7942.000 0.000 NA   NA
 11543008 923560   M5005_Spy_1276     FALSE NA 7942.000 0.000 NA   NA
 11685400 923560   M5005_Spy_1276     FALSE NA 7942.000 0.000 NA   NA
 11400646 923560   M5005_Spy_1276     FALSE NA 7973.000 0.000 NA   NA
 11543009 923560   M5005_Spy_1276     FALSE NA 7973.000 0.000 NA   NA
 11685401 923560   M5005_Spy_1276     FALSE NA 7973.000 0.000 NA   NA
 11400647 923560   M5005_Spy_1276     FALSE NA 8008.000 0.000 NA   NA
 11543010 923560   M5005_Spy_1276     FALSE NA 8008.000 0.000 NA   NA
 11685402 923560   M5005_Spy_1276     FALSE NA 8008.000 0.000 NA   NA
 11400648 923560   M5005_Spy_1276     FALSE NA 8039.000 0.000 NA   NA
 11543011 923560   M5005_Spy_1276     FALSE NA 8039.000 0.000 NA   NA
 11685403 923560   M5005_Spy_1276     FALSE NA 8039.000 0.000 NA   NA
 11400649 923560   M5005_Spy_1276     FALSE NA 8073.000 0.000 NA   NA
 11543012 923560   M5005_Spy_1276     FALSE NA 8073.000 0.000 NA   NA
 11685404 923560   M5005_Spy_1276     FALSE NA 8073.000 0.000 NA   NA
 11400650 923560   M5005_Spy_1276     FALSE NA 8104.000 0.000 NA   NA
 11543013 923560   M5005_Spy_1276     FALSE NA 8104.000 0.000 NA   NA
 11685405 923560   M5005_Spy_1276     FALSE NA 8104.000 0.000 NA   NA
 11400651 923560   M5005_Spy_1276     FALSE NA 8140.000 0.000 NA   NA
 11543014 923560   M5005_Spy_1276     FALSE NA 8140.000 0.000 NA   NA
 11685406 923560   M5005_Spy_1276     FALSE NA 8140.000 0.000 NA   NA
 923569 923570 M5005_Spy_1285 M5005_Spy_1286     TRUE 0.995 11.000 0.882 1.000 Y NA
 923570 923571 M5005_Spy_1286 M5005_Spy_1287     TRUE 0.996 -3.000 0.773 NA Y NA
 923571 923572 M5005_Spy_1287 M5005_Spy_1288     TRUE 0.994 2.000 0.711 NA Y NA
 923572 923573 M5005_Spy_1288 M5005_Spy_1289     TRUE 0.991 5.000 0.948 NA   NA
 923573 923574 M5005_Spy_1289 M5005_Spy_1290     TRUE 0.992 0.000 0.891 NA   NA
 923574 923575 M5005_Spy_1290 M5005_Spy_1291     TRUE 0.765 133.000 0.664 NA   NA
 923575 923576 M5005_Spy_1291 M5005_Spy_1292   valS FALSE 0.111 160.000 0.000 1.000   NA
 923576 923577 M5005_Spy_1292 M5005_Spy_1293 valS   FALSE 0.085 244.000 0.008 NA   NA
 923577 923578 M5005_Spy_1293 M5005_Spy_1294     TRUE 0.922 -3.000 0.033 NA   NA
 923578 923579 M5005_Spy_1294 M5005_Spy_1295     FALSE 0.014 425.000 0.000 NA   NA
 923579 923580 M5005_Spy_1295 M5005_Spy_1296     TRUE 0.632 18.000 0.000 NA   NA
 923581 923582 M5005_Spy_T0049 M5005_Spy_1297     FALSE 0.038 242.000 0.000 NA   NA
 923582 923583 M5005_Spy_1297 M5005_Spy_1298   aroB TRUE 0.950 56.000 0.003 0.003 Y NA
 923584 923585 M5005_Spy_1299 M5005_Spy_1300     TRUE 0.699 8.000 0.000 NA   NA
 923585 923586 M5005_Spy_1300 M5005_Spy_1301     TRUE 0.741 2.000 0.000 NA   NA
 923586 923587 M5005_Spy_1301 M5005_Spy_1302     TRUE 0.554 53.000 0.026 NA   NA
 923587 923588 M5005_Spy_1302 M5005_Spy_1303   aroE FALSE 0.042 235.000 0.000 1.000 N NA
 923588 923589 M5005_Spy_1303 M5005_Spy_1304 aroE lacZ FALSE 0.323 138.000 0.061 1.000 N NA
 923589 923590 M5005_Spy_1304 M5005_Spy_1305 lacZ   TRUE 0.896 20.000 0.167 1.000 N NA
 923590 923591 M5005_Spy_1305 M5005_Spy_1306     TRUE 0.996 0.000 0.167 0.011 Y NA
 923591 923592 M5005_Spy_1306 M5005_Spy_1307     TRUE 0.990 -10.000 0.667 NA   NA
 923592 923593 M5005_Spy_1307 M5005_Spy_1308     FALSE 0.023 306.000 0.000 NA   NA
 923593 923594 M5005_Spy_1308 M5005_Spy_1309     TRUE 0.959 81.000 0.333 0.032 Y NA
 923594 923595 M5005_Spy_1309 M5005_Spy_1310     TRUE 0.999 10.000 0.917 0.032 Y NA
 923596 923597 M5005_Spy_1311 M5005_Spy_1312     FALSE 0.114 144.000 0.000 NA   NA
 923598 923599 M5005_Spy_1313 M5005_Spy_1314   hyl TRUE 0.893 24.000 0.182 1.000   NA
 923599 923600 M5005_Spy_1314 M5005_Spy_1315 hyl   TRUE 0.809 51.000 0.286 1.000   NA
 923601 923602 M5005_Spy_1316 M5005_Spy_1317     TRUE 0.930 15.000 0.194 1.000   NA
 923603 923604 M5005_Spy_1318 M5005_Spy_1319 rocA   FALSE 0.009 665.000 0.000 NA N NA
 923605 923606 M5005_Spy_1320 M5005_Spy_1321 recX   FALSE 0.412 80.000 0.025 NA   NA
 923609 923610 M5005_Spy_T0050 M5005_Spy_T0051     TRUE 0.577 23.000 0.000 NA   NA
 923610 923611 M5005_Spy_T0051 M5005_Spy_T0052     FALSE 0.433 36.000 0.000 NA   NA
 923611 923612 M5005_Spy_T0052 M5005_Spy_T0053     TRUE 0.685 11.000 0.000 NA   NA
 923612 923613 M5005_Spy_T0053 M5005_Spy_T0054     TRUE 0.705 6.000 0.000 NA   NA
 923613 923614 M5005_Spy_T0054 M5005_Spy_T0055     TRUE 0.476 32.000 0.000 NA   NA
 923614 923615 M5005_Spy_T0055 M5005_Spy_T0056     TRUE 0.632 18.000 0.000 NA   NA
 923615 923616 M5005_Spy_T0056 M5005_Spy_R0013     TRUE 0.577 23.000 0.000 NA   NA
 923616 923617 M5005_Spy_R0013 M5005_Spy_R0014     FALSE 0.163 92.000 0.000 NA   NA
 923617 923618 M5005_Spy_R0014 M5005_Spy_T0057     FALSE 0.024 298.000 0.000 NA   NA
 923618 923619 M5005_Spy_T0057 M5005_Spy_R0015     FALSE 0.317 50.000 0.000 NA   NA
 923621 923622 M5005_Spy_1325 M5005_Spy_1326   comFC TRUE 0.471 80.000 0.080 NA   NA
 923622 923623 M5005_Spy_1326 M5005_Spy_1327 comFC comFA TRUE 0.942 -28.000 0.130 NA   NA
 923624 923625 M5005_Spy_1328 M5005_Spy_1329   cysM FALSE 0.337 128.000 0.033 1.000   NA
 923626 923627 M5005_Spy_1330 M5005_Spy_1331     TRUE 0.948 0.000 0.151 1.000   NA
 923627 923628 M5005_Spy_1331 M5005_Spy_1332   yvqC TRUE 0.813 37.000 0.164 1.000   NA
 923628 923629 M5005_Spy_1332 M5005_Spy_1333 yvqC yvqE TRUE 0.999 -7.000 0.853 0.011 Y NA
 923629 923630 M5005_Spy_1333 M5005_Spy_1334 yvqE yvqF TRUE 0.990 -3.000 0.679 NA   NA
 923630 923631 M5005_Spy_1334 M5005_Spy_1335 yvqF   FALSE 0.321 123.000 0.039 NA   NA
 923631 923632 M5005_Spy_1335 M5005_Spy_1336   pppL TRUE 0.996 -3.000 0.704 1.000 Y NA
 923632 923633 M5005_Spy_1336 M5005_Spy_1337 pppL sunL TRUE 0.731 38.000 0.074 1.000 N NA
 923633 923634 M5005_Spy_1337 M5005_Spy_1338 sunL   TRUE 0.991 -10.000 0.305 1.000 Y NA
 923634 923635 M5005_Spy_1338 M5005_Spy_1339   priA TRUE 0.529 62.000 0.052 1.000 N NA
 923635 923636 M5005_Spy_1339 M5005_Spy_1340 priA   TRUE 0.792 65.000 0.032 0.059 N NA
 923636 923637 M5005_Spy_1340 M5005_Spy_1341   gmk TRUE 0.965 16.000 0.471 1.000 N NA
 923637 923638 M5005_Spy_1341 M5005_Spy_1342 gmk   FALSE 0.325 110.000 0.010 1.000   NA
 923638 923639 M5005_Spy_1342 M5005_Spy_1343     FALSE 0.272 130.000 0.006 1.000   NA
 923640 923641 M5005_Spy_1344 M5005_Spy_1345 atoB atoD.1 TRUE 0.951 24.000 0.150 1.000 Y NA
 923641 923642 M5005_Spy_1345 M5005_Spy_1346 atoD.1 atoA TRUE 0.997 2.000 0.200 0.002 Y NA
 923642 923643 M5005_Spy_1346 M5005_Spy_1347 atoA   TRUE 0.975 33.000 0.111 0.040 Y NA
 923643 923644 M5005_Spy_1347 M5005_Spy_1348     TRUE 0.743 71.000 0.333 1.000 N NA
 923644 923645 M5005_Spy_1348 M5005_Spy_1349   luxS TRUE 0.900 -16.000 0.006 1.000 N NA
 923646 923647 M5005_Spy_1350 M5005_Spy_1351     TRUE 0.858 14.000 0.029 NA   NA
 923647 923648 M5005_Spy_1351 M5005_Spy_1352     FALSE 0.014 445.000 0.000 NA   NA
 923648 923649 M5005_Spy_1352 M5005_Spy_1353     TRUE 0.755 122.000 0.579 NA   NA
 923650 923651 M5005_Spy_1354 M5005_Spy_1355 recU pbp1A TRUE 0.977 -13.000 0.319 1.000   NA
 923652 923653 M5005_Spy_1356 M5005_Spy_1357 pepC   FALSE 0.167 185.000 0.017 1.000 N NA
 923653 923654 M5005_Spy_1357 M5005_Spy_1358   nadE TRUE 0.997 2.000 0.194 0.002 Y NA
 923654 923655 M5005_Spy_1358 M5005_Spy_1359 nadE   FALSE 0.211 171.000 0.032 1.000 N NA
 923655 923656 M5005_Spy_1359 M5005_Spy_1360     FALSE 0.219 169.000 0.033 1.000 N NA
 923656 923657 M5005_Spy_1360 M5005_Spy_1361   aapA TRUE 0.576 64.000 0.117 NA   NA
 923657 923658 M5005_Spy_1361 M5005_Spy_1362 aapA   TRUE 0.665 104.000 0.364 NA   NA
 923658 923659 M5005_Spy_1362 M5005_Spy_1363     TRUE 0.990 -3.000 0.310 1.000 Y NA
 923659 923660 M5005_Spy_1363 M5005_Spy_1364     FALSE 0.154 195.000 0.018 1.000 N NA
 923660 923661 M5005_Spy_1364 M5005_Spy_1365     FALSE 0.196 158.000 0.007 1.000 N NA
 923661 923662 M5005_Spy_1365 M5005_Spy_1366     TRUE 0.968 2.000 0.038 1.000 Y NA
 923662 923663 M5005_Spy_1366 M5005_Spy_1367   ftsL TRUE 0.973 4.000 0.456 1.000 N NA
 923663 923664 M5005_Spy_1367 M5005_Spy_1368 ftsL mraW TRUE 0.902 5.000 0.077 1.000 N NA
 923664 923665 M5005_Spy_1368 M5005_Spy_1369 mraW   TRUE 0.564 24.000 0.000 NA   NA
 923665 923666 M5005_Spy_1369 M5005_Spy_1370   proA FALSE 0.019 343.000 0.000 NA   NA
 923666 923667 M5005_Spy_1370 M5005_Spy_1371 proA   TRUE 0.998 -7.000 0.281 0.002 Y NA
 923667 923668 M5005_Spy_1371 M5005_Spy_1372   proB FALSE 0.410 65.000 0.006 NA   NA
 923668 923669 M5005_Spy_1372 M5005_Spy_1373 proB   TRUE 0.963 5.000 0.341 NA   NA
 923669 923670 M5005_Spy_1373 M5005_Spy_1374     TRUE 0.791 34.000 0.136 NA   NA
 923670 923671 M5005_Spy_1374 M5005_Spy_1375   tkt FALSE 0.373 193.000 0.300 NA   NA
 923671 923672 M5005_Spy_1375 M5005_Spy_1376 tkt   FALSE 0.210 218.000 0.000 1.000 Y NA
 923672 923673 M5005_Spy_1376 M5005_Spy_1377     FALSE 0.130 126.000 0.000 NA   NA
 923673 923674 M5005_Spy_1377 M5005_Spy_1378     TRUE 0.983 -10.000 0.462 NA   NA
 923674 923675 M5005_Spy_1378 M5005_Spy_1379   glpF TRUE 0.677 109.000 0.364 1.000   NA
 923675 923676 M5005_Spy_1379 M5005_Spy_1380 glpF glpO TRUE 0.979 2.000 0.500 1.000 N NA
 923676 923677 M5005_Spy_1380 M5005_Spy_1381 glpO glpK TRUE 0.998 16.000 0.500 0.002 Y NA
 923677 923678 M5005_Spy_1381 M5005_Spy_1382 glpK   FALSE 0.022 361.000 0.000 1.000   NA
 923678 923679 M5005_Spy_1382 M5005_Spy_1383     FALSE 0.308 127.000 0.029 NA   NA
 923679 923680 M5005_Spy_1383 M5005_Spy_1384   glyS FALSE 0.241 154.000 0.020 NA   NA
 923680 923681 M5005_Spy_1384 M5005_Spy_1385 glyS glyQ TRUE 0.862 378.000 0.651 0.001 Y NA
 923681 923682 M5005_Spy_1385 M5005_Spy_1386 glyQ   FALSE 0.021 372.000 0.000 1.000   NA
 923682 923683 M5005_Spy_1386 M5005_Spy_1387     FALSE 0.372 132.000 0.074 1.000   NA
 923683 923684 M5005_Spy_1387 M5005_Spy_1388   nagA FALSE 0.354 122.000 0.045 1.000   NA
 923684 923685 M5005_Spy_1388 M5005_Spy_1389 nagA   FALSE 0.382 118.000 0.090 1.000 N NA
 923689 923690 M5005_Spy_1393 M5005_Spy_1394     TRUE 0.901 2.000 0.047 NA   NA
 923690 923691 M5005_Spy_1394 M5005_Spy_1395   lacD.1 FALSE 0.149 197.000 0.019 NA   NA
 923691 923692 M5005_Spy_1395 M5005_Spy_1396 lacD.1   TRUE 0.664 150.000 0.000 0.002   NA
 923692 923693 M5005_Spy_1396 M5005_Spy_1397   lacB.1 TRUE 0.732 10.000 0.000 1.000   NA
 923693 923694 M5005_Spy_1397 M5005_Spy_1398 lacB.1 lacA.1 TRUE 0.998 15.000 0.500 0.002 Y NA
 923694 923695 M5005_Spy_1398 M5005_Spy_1399 lacA.1   FALSE 0.181 240.000 0.000 1.000 Y NA
 923695 923696 M5005_Spy_1399 M5005_Spy_1400     TRUE 0.965 29.000 0.000 0.017 Y NA
 923696 923697 M5005_Spy_1400 M5005_Spy_1401     TRUE 0.998 -7.000 0.429 0.013 Y NA
 923699 923700 M5005_Spy_1403 M5005_Spy_1404   copZ TRUE 0.960 7.000 0.333 NA   NA
 923700 923701 M5005_Spy_1404 M5005_Spy_1405 copZ copA TRUE 0.993 14.000 0.048 0.002 Y NA
 923701 923702 M5005_Spy_1405 M5005_Spy_1406 copA copY TRUE 0.921 0.000 0.064 1.000 N NA
 923704 923705 M5005_Spy_1408 M5005_Spy_1409 rbfA infB TRUE 0.734 199.000 0.530 1.000 Y NA
 923705 923706 M5005_Spy_1409 M5005_Spy_1410 infB   TRUE 0.967 20.000 0.223 NA Y NA
 923706 923707 M5005_Spy_1410 M5005_Spy_1411     TRUE 0.979 -7.000 0.408 NA N NA
 923707 923708 M5005_Spy_1411 M5005_Spy_1412   nusA TRUE 0.979 16.000 0.323 NA Y NA
 923708 923709 M5005_Spy_1412 M5005_Spy_1413 nusA   TRUE 0.708 175.000 0.759 NA   NA
 923709 923710 M5005_Spy_1413 M5005_Spy_1414     FALSE 0.037 245.000 0.000 NA   NA
 923712 923713 M5005_Spy_1416 M5005_Spy_1417     FALSE 0.145 111.000 0.000 NA   NA
 923713 923714 M5005_Spy_1417 M5005_Spy_1418     TRUE 0.989 -3.000 0.667 NA   NA
 923714 923715 M5005_Spy_1418 M5005_Spy_1419     TRUE 0.685 11.000 0.000 NA   NA
 923715 923716 M5005_Spy_1419 M5005_Spy_1420     TRUE 0.730 3.000 0.000 NA   NA
 923716 923717 M5005_Spy_1420 M5005_Spy_1421     TRUE 0.694 9.000 0.000 NA   NA
 923717 923718 M5005_Spy_1421 M5005_Spy_1422     TRUE 0.685 11.000 0.000 NA   NA
 923718 923719 M5005_Spy_1422 M5005_Spy_1423     TRUE 0.767 0.000 0.000 NA   NA
 923719 923720 M5005_Spy_1423 M5005_Spy_1424     TRUE 0.794 -3.000 0.000 NA   NA
 923720 923721 M5005_Spy_1424 M5005_Spy_1425     TRUE 0.687 10.000 0.000 NA   NA
 923721 923722 M5005_Spy_1425 M5005_Spy_1426     TRUE 0.963 12.000 0.400 NA   NA
 923722 923723 M5005_Spy_1426 M5005_Spy_1427     TRUE 0.959 15.000 0.400 NA   NA
 923723 923724 M5005_Spy_1427 M5005_Spy_1428     TRUE 0.654 75.000 0.235 NA   NA
 923724 923725 M5005_Spy_1428 M5005_Spy_1429     TRUE 0.584 54.000 0.062 NA   NA
 923725 923726 M5005_Spy_1429 M5005_Spy_1430     TRUE 0.871 12.000 0.041 NA   NA
 923726 923727 M5005_Spy_1430 M5005_Spy_1431     TRUE 0.988 4.000 0.800 NA   NA
 923727 923728 M5005_Spy_1431 M5005_Spy_1432     TRUE 0.982 15.000 0.750 NA   NA
 923728 923729 M5005_Spy_1432 M5005_Spy_1433     TRUE 0.981 11.000 0.667 NA   NA
 923729 923730 M5005_Spy_1433 M5005_Spy_1434     TRUE 0.972 12.000 0.500 NA   NA
 923730 923731 M5005_Spy_1434 M5005_Spy_1435     TRUE 0.928 13.000 0.192 NA   NA
 923731 923732 M5005_Spy_1435 M5005_Spy_1436     FALSE 0.095 156.000 0.000 NA   NA
 923732 923733 M5005_Spy_1436 M5005_Spy_1437     TRUE 0.730 3.000 0.000 NA   NA
 923733 923734 M5005_Spy_1437 M5005_Spy_1438     TRUE 0.836 31.000 0.167 NA   NA
 923734 923735 M5005_Spy_1438 M5005_Spy_1439     TRUE 0.966 -34.000 0.250 NA   NA
 923735 923736 M5005_Spy_1439 M5005_Spy_1440     TRUE 0.960 16.000 0.429 NA   NA
 923736 923737 M5005_Spy_1440 M5005_Spy_1441     TRUE 0.994 -10.000 0.176 0.002   NA
 923737 923738 M5005_Spy_1441 M5005_Spy_1442     TRUE 0.763 48.000 0.176 1.000   NA
 923738 923739 M5005_Spy_1442 M5005_Spy_1443     TRUE 0.794 -3.000 0.000 NA   NA
 923739 923740 M5005_Spy_1443 M5005_Spy_1444     TRUE 0.802 -10.000 0.000 NA   NA
 923740 923741 M5005_Spy_1444 M5005_Spy_1445     TRUE 0.694 9.000 0.000 NA   NA
 923741 923742 M5005_Spy_1445 M5005_Spy_1446     TRUE 0.794 -3.000 0.000 NA   NA
 923742 923743 M5005_Spy_1446 M5005_Spy_1447     TRUE 0.980 1.000 0.500 NA   NA
 923743 923744 M5005_Spy_1447 M5005_Spy_1448     TRUE 0.971 -3.000 0.286 NA   NA
 923744 923745 M5005_Spy_1448 M5005_Spy_1449     FALSE 0.016 387.000 0.000 NA   NA
 923745 923746 M5005_Spy_1449 M5005_Spy_1450     TRUE 0.911 5.000 0.111 NA   NA
 923746 923747 M5005_Spy_1450 M5005_Spy_1451     TRUE 0.830 43.000 0.250 NA   NA
 923747 923748 M5005_Spy_1451 M5005_Spy_1452     TRUE 0.685 11.000 0.000 NA   NA
 923748 923749 M5005_Spy_1452 M5005_Spy_1453     TRUE 0.720 4.000 0.000 NA   NA
 923749 923750 M5005_Spy_1453 M5005_Spy_1454     TRUE 0.939 0.000 0.143 NA   NA
 923750 923751 M5005_Spy_1454 M5005_Spy_1455     TRUE 0.902 88.000 1.000 NA   NA
 923751 923752 M5005_Spy_1455 M5005_Spy_1456     TRUE 0.794 -3.000 0.000 NA   NA
 923752 923753 M5005_Spy_1456 M5005_Spy_1457     TRUE 0.794 -3.000 0.000 NA   NA
 923753 923754 M5005_Spy_1457 M5005_Spy_1458     TRUE 0.989 -3.000 0.667 NA   NA
 923754 923755 M5005_Spy_1458 M5005_Spy_1459     TRUE 0.995 -7.000 1.000 NA   NA
 923755 923756 M5005_Spy_1459 M5005_Spy_1460     TRUE 0.794 -3.000 0.000 NA   NA
 923756 923757 M5005_Spy_1460 M5005_Spy_1461     FALSE 0.253 62.000 0.000 NA   NA
 923760 923761 M5005_Spy_1464 M5005_Spy_1465     TRUE 0.989 14.000 1.000 NA   NA
 923761 923762 M5005_Spy_1465 M5005_Spy_1466     TRUE 0.685 11.000 0.000 NA   NA
 923762 923763 M5005_Spy_1466 M5005_Spy_1467   int.3 FALSE 0.138 117.000 0.000 NA   NA
 923764 923765 M5005_Spy_T0058 M5005_Spy_1468     FALSE 0.237 65.000 0.000 NA   NA
 923765 923766 M5005_Spy_1468 M5005_Spy_1469     TRUE 0.943 0.000 0.154 NA   NA
 923766 923767 M5005_Spy_1469 M5005_Spy_1470     TRUE 0.542 64.000 0.107 NA N NA
 923767 923768 M5005_Spy_1470 M5005_Spy_1471     TRUE 0.930 3.000 0.167 NA N NA
 923769 923770 M5005_Spy_1472 M5005_Spy_1473 hit   TRUE 0.931 -3.000 0.063 NA   NA
 923771 923772 M5005_Spy_1474 M5005_Spy_1475 lytR   TRUE 0.947 9.000 0.283 NA N NA
 923772 923773 M5005_Spy_1475 M5005_Spy_1476     TRUE 0.919 -25.000 0.033 NA   NA
 923773 923774 M5005_Spy_1476 M5005_Spy_1477     FALSE 0.206 154.000 0.008 NA   NA
 923775 923776 M5005_Spy_1478 M5005_Spy_1479   manL FALSE 0.023 352.000 0.000 1.000   NA
 923776 923777 M5005_Spy_1479 M5005_Spy_1480 manL manM TRUE 0.989 89.000 0.943 0.016 Y NA
 923777 923778 M5005_Spy_1480 M5005_Spy_1481 manM manN TRUE 0.998 17.000 0.812 0.016 Y NA
 923778 923779 M5005_Spy_1481 M5005_Spy_1482 manN manO TRUE 0.773 114.000 0.583 NA   NA
 923779 923780 M5005_Spy_1482 M5005_Spy_1483 manO serS FALSE 0.031 392.000 0.003 NA   NA
 923781 923782 M5005_Spy_1484 M5005_Spy_1485 accD accA TRUE 0.998 -3.000 0.234 0.002 Y NA
 923782 923783 M5005_Spy_1485 M5005_Spy_1486 accA accC TRUE 0.994 9.000 0.090 0.002 Y NA
 923783 923784 M5005_Spy_1486 M5005_Spy_1487 accC fabZ TRUE 0.907 32.000 0.045 1.000 Y NA
 923784 923785 M5005_Spy_1487 M5005_Spy_1488 fabZ accB TRUE 0.996 -3.000 0.047 0.006 Y NA
 923785 923786 M5005_Spy_1488 M5005_Spy_1489 accB fabF TRUE 0.972 2.000 0.074 1.000 Y NA
 923786 923787 M5005_Spy_1489 M5005_Spy_1490 fabF   TRUE 0.956 15.000 0.056 1.000 Y NA
 923787 923788 M5005_Spy_1490 M5005_Spy_1491   fabD TRUE 0.999 -10.000 0.432 0.006 Y NA
 923788 923789 M5005_Spy_1491 M5005_Spy_1492 fabD fabK TRUE 0.844 25.000 0.099 1.000   NA
 923789 923790 M5005_Spy_1492 M5005_Spy_1493 fabK acpP FALSE 0.307 202.000 0.216 1.000   NA
 923790 923791 M5005_Spy_1493 M5005_Spy_1494 acpP fabH TRUE 0.900 61.000 0.065 0.006   NA
 923791 923792 M5005_Spy_1494 M5005_Spy_1495 fabH   TRUE 0.917 1.000 0.070 1.000 N NA
 923792 923793 M5005_Spy_1495 M5005_Spy_1496   phaB TRUE 0.502 77.000 0.098 1.000 N NA
 923793 923794 M5005_Spy_1496 M5005_Spy_1497 phaB dnaJ FALSE 0.047 220.000 0.000 1.000 N NA
 923794 923795 M5005_Spy_1497 M5005_Spy_1498 dnaJ dnaK TRUE 0.741 281.000 0.196 0.003 Y NA
 923795 923796 M5005_Spy_1498 M5005_Spy_1499 dnaK grpE TRUE 0.805 181.000 0.026 0.006 Y NA
 923796 923797 M5005_Spy_1499 M5005_Spy_1500 grpE hrcA TRUE 0.682 42.000 0.051 1.000 N NA
 923797 923798 M5005_Spy_1500 M5005_Spy_1501 hrcA   FALSE 0.255 135.000 0.009 1.000 N NA
 923798 923799 M5005_Spy_1501 M5005_Spy_1502     TRUE 0.956 -3.000 0.174 1.000 N NA
 923799 923800 M5005_Spy_1502 M5005_Spy_1503     TRUE 0.958 -10.000 0.174 1.000 N NA
 923800 923801 M5005_Spy_1503 M5005_Spy_1504     FALSE 0.019 391.000 0.000 1.000   NA
 923801 923802 M5005_Spy_1504 M5005_Spy_1505     FALSE 0.051 210.000 0.000 NA   NA
 923802 923803 M5005_Spy_1505 M5005_Spy_1506   gatB TRUE 0.794 -3.000 0.000 NA   NA
 923803 923804 M5005_Spy_1506 M5005_Spy_1507 gatB gatA TRUE 0.999 0.000 0.492 0.002 Y NA
 923804 923805 M5005_Spy_1507 M5005_Spy_1508 gatA gatC TRUE 0.999 0.000 0.643 0.002 Y NA
 923805 923806 M5005_Spy_1508 M5005_Spy_1509 gatC   FALSE 0.091 232.000 0.002 1.000   NA
 923806 923807 M5005_Spy_1509 M5005_Spy_1510     TRUE 0.986 -28.000 0.000 0.001   NA
 923807 923808 M5005_Spy_1510 M5005_Spy_1511     FALSE 0.014 574.000 0.000 1.000   NA
 923808 923809 M5005_Spy_1511 M5005_Spy_1512   codY FALSE 0.327 147.000 0.083 1.000 N NA
 923809 923810 M5005_Spy_1512 M5005_Spy_1513 codY   FALSE 0.120 218.000 0.015 1.000 N NA
 923814 923815 M5005_Spy_1517 M5005_Spy_1518     TRUE 0.679 13.000 0.000 NA   NA
 923815 923816 M5005_Spy_1518 M5005_Spy_1519   recG FALSE 0.027 293.000 0.000 1.000 N NA
 923818 923819 M5005_Spy_1521 M5005_Spy_1522     TRUE 0.980 -63.000 0.429 1.000   NA
 923819 923820 M5005_Spy_1522 M5005_Spy_1523     TRUE 0.986 -3.000 0.562 NA   NA
 923820 923821 M5005_Spy_1523 M5005_Spy_1524     TRUE 0.936 -3.000 0.081 NA   NA
 923821 923822 M5005_Spy_1524 M5005_Spy_1525     TRUE 0.998 -7.000 0.576 0.006 N NA
 923822 923823 M5005_Spy_1525 M5005_Spy_1526   fhuC TRUE 0.926 -3.000 0.047 1.000 N NA
 923823 923824 M5005_Spy_1526 M5005_Spy_1527 fhuC   TRUE 0.996 -3.000 0.657 1.000 Y NA
 923824 923825 M5005_Spy_1527 M5005_Spy_1528     TRUE 0.996 2.000 0.877 1.000 Y NA
 923825 923826 M5005_Spy_1528 M5005_Spy_1529   shp TRUE 0.958 -16.000 0.182 NA   NA
 923826 923827 M5005_Spy_1529 M5005_Spy_1530 shp   FALSE 0.337 197.000 0.273 NA   NA
 923827 923828 M5005_Spy_1530 M5005_Spy_1531   isp2 FALSE 0.013 489.000 0.000 NA   NA
 923828 923829 M5005_Spy_1531 M5005_Spy_1532 isp2 acpS FALSE 0.378 87.000 0.022 NA   NA
 923829 923830 M5005_Spy_1532 M5005_Spy_1533 acpS alr TRUE 0.939 -3.000 0.093 1.000 N NA
 923830 923831 M5005_Spy_1533 M5005_Spy_1534 alr secA FALSE 0.282 116.000 0.008 1.000 N NA
 923831 923832 M5005_Spy_1534 M5005_Spy_1535 secA   FALSE 0.199 78.000 0.000 NA   NA
 923832 923833 M5005_Spy_1535 M5005_Spy_1536     TRUE 0.796 -16.000 0.000 NA   NA
 923833 923834 M5005_Spy_1536 M5005_Spy_1537     TRUE 0.976 -97.000 0.000 0.012   NA
 923834 923835 M5005_Spy_1537 M5005_Spy_1538   pmi FALSE 0.091 162.000 0.000 1.000 N NA
 923835 923836 M5005_Spy_1538 M5005_Spy_1539 pmi scrK TRUE 0.843 95.000 0.333 1.000 Y NA
 923836 923837 M5005_Spy_1539 M5005_Spy_1540 scrK endoS FALSE 0.075 192.000 0.000 1.000   NA
 923837 923838 M5005_Spy_1540 M5005_Spy_1541 endoS   TRUE 0.564 24.000 0.000 NA   NA
 923838 923839 M5005_Spy_1541 M5005_Spy_1542   scrA FALSE 0.385 43.000 0.000 NA   NA
 923840 923841 M5005_Spy_1543 M5005_Spy_1544 scrB scrR TRUE 0.980 5.000 0.571 1.000 N NA
 923842 923843 M5005_Spy_1545 M5005_Spy_1546 nusB   TRUE 0.971 -7.000 0.265 NA   NA
 923843 923844 M5005_Spy_1546 M5005_Spy_1547   efp TRUE 0.632 46.000 0.031 NA   NA
 923844 923845 M5005_Spy_1547 M5005_Spy_1548 efp comEB FALSE 0.293 96.000 0.005 1.000 N NA
 923845 923846 M5005_Spy_1548 M5005_Spy_1549 comEB   TRUE 0.698 35.000 0.018 1.000 N NA
 923846 923847 M5005_Spy_1549 M5005_Spy_1550   uvrA FALSE 0.284 115.000 0.008 1.000 N NA
 923848 923849 M5005_Spy_1551 M5005_Spy_1552 corA   FALSE 0.341 133.000 0.072 NA   NA
 923850 923851 M5005_Spy_1553 M5005_Spy_1554 rpsR ssb3 FALSE 0.198 165.000 0.012 1.000 N NA
 923851 923852 M5005_Spy_1554 M5005_Spy_1555 ssb3 rpsF TRUE 0.787 22.000 0.012 1.000 N NA
 923852 923853 M5005_Spy_1555 M5005_Spy_1556 rpsF   FALSE 0.078 173.000 0.000 NA   NA
 923854 923855 M5005_Spy_1557 M5005_Spy_1558 mutY   FALSE 0.341 76.000 0.002 1.000 N NA
 923856 923857 M5005_Spy_1559 M5005_Spy_1560 trx   TRUE 0.460 81.000 0.053 1.000   NA
 923857 923858 M5005_Spy_1560 M5005_Spy_1561   mutS2 TRUE 0.884 1.000 0.005 1.000   NA
 923858 923859 M5005_Spy_1561 M5005_Spy_1562 mutS2   FALSE 0.333 149.000 0.070 1.000   NA
 923859 923860 M5005_Spy_1562 M5005_Spy_1563     TRUE 0.885 3.000 0.019 NA   NA
 923861 923862 M5005_Spy_1564 M5005_Spy_1565   spi TRUE 0.892 11.000 0.080 1.000 N NA
 923862 923863 M5005_Spy_1565 M5005_Spy_1566 spi recD TRUE 0.598 58.000 0.099 1.000 N NA
 923863 923864 M5005_Spy_1566 M5005_Spy_1567 recD   FALSE 0.390 91.000 0.050 NA   NA
 923867 923868 M5005_Spy_1570 M5005_Spy_1571     TRUE 0.975 -15.000 0.326 NA   NA
 923870 923871 M5005_Spy_1573 M5005_Spy_1574 glpF.2   FALSE 0.081 170.000 0.000 NA   NA
 923871 923872 M5005_Spy_1574 M5005_Spy_1575   norA FALSE 0.065 186.000 0.000 NA   NA
 923873 923874 M5005_Spy_1576 M5005_Spy_1577 srv pepXP TRUE 0.858 22.000 0.081 1.000   NA
 923876 923877 M5005_Spy_1579 M5005_Spy_1580     FALSE 0.114 193.000 0.002 NA   NA
 923878 923879 M5005_Spy_1581 M5005_Spy_1582   dnaQ FALSE 0.391 149.000 0.156 1.000 N NA
 923879 923880 M5005_Spy_1582 M5005_Spy_1583 dnaQ   TRUE 0.624 49.000 0.057 NA   NA
 923882 923883 M5005_Spy_1585 M5005_Spy_1586 deoC nupC TRUE 0.965 30.000 0.333 1.000 Y NA
 923883 923884 M5005_Spy_1586 M5005_Spy_1587 nupC udp TRUE 0.935 21.000 0.015 1.000 Y NA
 923884 923885 M5005_Spy_1587 M5005_Spy_1588 udp   FALSE 0.237 65.000 0.000 NA   NA
 923886 923887 M5005_Spy_1589 M5005_Spy_1590 crgR rpsN2 FALSE 0.041 236.000 0.000 1.000 N NA
 923888 923889 M5005_Spy_1591 M5005_Spy_1592     TRUE 0.932 -10.000 0.030 1.000   NA
 923889 923890 M5005_Spy_1592 M5005_Spy_1593     TRUE 0.964 -28.000 0.209 1.000   NA
 923891 923892 M5005_Spy_1594 M5005_Spy_1595     TRUE 0.983 2.000 0.576 NA   NA
 923893 923894 M5005_Spy_1596 M5005_Spy_1597 glnA   TRUE 0.809 38.000 0.179 1.000 N NA
 923894 923895 M5005_Spy_1597 M5005_Spy_1598     TRUE 0.599 67.000 0.154 NA   NA
 923895 923896 M5005_Spy_1598 M5005_Spy_1599   pgk FALSE 0.059 263.000 0.002 NA   NA
 923896 923897 M5005_Spy_1599 M5005_Spy_1600 pgk lppC FALSE 0.133 193.000 0.003 1.000   NA
 923897 923898 M5005_Spy_1600 M5005_Spy_1601 lppC   FALSE 0.051 230.000 0.000 1.000   NA
 923898 923899 M5005_Spy_1601 M5005_Spy_1602     FALSE 0.097 237.000 0.006 1.000   NA
 923899 923900 M5005_Spy_1602 M5005_Spy_1603   asp TRUE 0.984 0.000 0.567 NA   NA
 923900 923901 M5005_Spy_1603 M5005_Spy_1604 asp   TRUE 0.547 25.000 0.000 NA   NA
 923901 923902 M5005_Spy_1604 M5005_Spy_1605     TRUE 0.711 5.000 0.000 NA   NA
 923902 923903 M5005_Spy_1605 M5005_Spy_1606   rpmB FALSE 0.074 178.000 0.000 1.000 N NA
 923903 923904 M5005_Spy_1606 M5005_Spy_1607 rpmB fba FALSE 0.017 382.000 0.000 1.000 N NA
 923904 923905 M5005_Spy_1607 M5005_Spy_T0059 fba   FALSE 0.053 207.000 0.000 NA   NA
 923905 923906 M5005_Spy_T0059 M5005_Spy_1608     FALSE 0.290 54.000 0.000 NA   NA
 923906 923907 M5005_Spy_1608 M5005_Spy_1609     FALSE 0.172 168.000 0.002 1.000   NA
 923907 923908 M5005_Spy_1609 M5005_Spy_1610   pyrG TRUE 0.991 -3.000 0.011 0.001   NA
 923908 923909 M5005_Spy_1610 M5005_Spy_1611 pyrG rpoE FALSE 0.101 257.000 0.029 1.000   NA
 923909 923910 M5005_Spy_1611 M5005_Spy_1612 rpoE ropA FALSE 0.100 217.000 0.005 1.000 N NA
 923912 923913 M5005_Spy_1614 M5005_Spy_1615     TRUE 0.907 14.000 0.149 NA   NA
 923913 923914 M5005_Spy_1615 M5005_Spy_1616   thiD TRUE 0.971 -10.000 0.276 NA   NA
 923914 923915 M5005_Spy_1616 M5005_Spy_1617 thiD   TRUE 0.933 -10.000 0.058 1.000 N NA
 923915 923916 M5005_Spy_1617 M5005_Spy_1618   comX.2 FALSE 0.081 185.000 0.000 1.000   NA
 923916 923917 M5005_Spy_1618 M5005_Spy_T0060 comX.2   TRUE 0.534 26.000 0.000 NA   NA
 923917 923918 M5005_Spy_T0060 M5005_Spy_T0061     FALSE 0.193 80.000 0.000 NA   NA
 923918 923919 M5005_Spy_T0061 M5005_Spy_R0016     TRUE 0.685 11.000 0.000 NA   NA
 923919 923920 M5005_Spy_R0016 M5005_Spy_R0017     FALSE 0.163 92.000 0.000 NA   NA
 923920 923921 M5005_Spy_R0017 M5005_Spy_T0062     FALSE 0.024 298.000 0.000 NA   NA
 923921 923922 M5005_Spy_T0062 M5005_Spy_R0018     FALSE 0.317 50.000 0.000 NA   NA
 923925 923926 M5005_Spy_1621 M5005_Spy_1622 hsdR hsdS TRUE 0.990 13.000 0.000 0.001 Y NA
 923926 923927 M5005_Spy_1622 M5005_Spy_1623 hsdS hsdM TRUE 0.976 13.000 0.000 0.056 Y NA
 923928 923929 M5005_Spy_1624 M5005_Spy_1625   salR FALSE 0.102 152.000 0.000 NA   NA
 923929 923930 M5005_Spy_1625 M5005_Spy_1626 salR   TRUE 0.996 -19.000 0.704 NA Y NA
 923930 923931 M5005_Spy_1626 M5005_Spy_1627   salY FALSE 0.408 40.000 0.000 NA   NA
 923931 923932 M5005_Spy_1627 M5005_Spy_1628 salY   TRUE 0.780 2.000 0.000 1.000   NA
 923932 923933 M5005_Spy_1628 M5005_Spy_1629   salX TRUE 0.975 -3.000 0.000 0.020   NA
 923933 923934 M5005_Spy_1629 M5005_Spy_1630 salX salB FALSE 0.206 74.000 0.000 NA   NA
 923934 923935 M5005_Spy_1630 M5005_Spy_1631 salB salA FALSE 0.182 83.000 0.000 NA   NA
 923935 923936 M5005_Spy_1631 M5005_Spy_1632 salA lacG FALSE 0.015 512.000 0.000 1.000   NA
 923936 923937 M5005_Spy_1632 M5005_Spy_1633 lacG lacE TRUE 0.530 88.000 0.000 1.000 Y NA
 923937 923938 M5005_Spy_1633 M5005_Spy_1634 lacE lacF TRUE 0.996 0.000 0.150 0.013 Y NA
 923938 923939 M5005_Spy_1634 M5005_Spy_1635 lacF lacD.2 TRUE 0.988 24.000 0.667 1.000 Y NA
 923939 923940 M5005_Spy_1635 M5005_Spy_1636 lacD.2 lacC.2 TRUE 0.990 4.000 0.000 0.002 Y NA
 923940 923941 M5005_Spy_1636 M5005_Spy_1637 lacC.2 lacB.2 TRUE 0.738 48.000 0.000 1.000 Y NA
 923941 923942 M5005_Spy_1637 M5005_Spy_1638 lacB.2 lacA.2 TRUE 0.970 35.000 0.000 0.002 Y NA
 923943 923944 M5005_Spy_1639 M5005_Spy_1640 lacR.2   FALSE 0.011 661.000 0.000 NA   NA
 923944 923945 M5005_Spy_1640 M5005_Spy_1641     TRUE 0.802 -10.000 0.000 NA   NA
 923945 923946 M5005_Spy_1641 M5005_Spy_1642     FALSE 0.102 152.000 0.000 NA   NA
 923948 923949 M5005_Spy_1643 M5005_Spy_1645     FALSE 0.129 334.000 0.000 0.056   NA
 923950 923951 M5005_Spy_1646 M5005_Spy_1647 rpsI rplM TRUE 0.997 21.000 0.601 0.022 Y NA
 923951 923952 M5005_Spy_1647 M5005_Spy_1648 rplM   FALSE 0.048 218.000 0.000 1.000 N NA
 923952 923953 M5005_Spy_1648 M5005_Spy_1649     TRUE 0.926 -3.000 0.051 NA   NA
 923953 923954 M5005_Spy_1649 M5005_Spy_1650     FALSE 0.122 136.000 0.000 NA   NA
 923954 923955 M5005_Spy_1650 M5005_Spy_1651     FALSE 0.366 97.000 0.036 NA   NA
 923955 923956 M5005_Spy_1651 M5005_Spy_1652     TRUE 0.914 4.000 0.109 NA   NA
 923956 923957 M5005_Spy_1652 M5005_Spy_1653     TRUE 0.525 47.000 0.003 NA   NA
 923957 923958 M5005_Spy_1653 M5005_Spy_1654     FALSE 0.059 196.000 0.000 NA   NA
 923958 923959 M5005_Spy_1654 M5005_Spy_1655   cysS TRUE 0.952 -7.000 0.129 1.000   NA
 923959 923960 M5005_Spy_1655 M5005_Spy_1656 cysS   TRUE 0.675 28.000 0.002 NA   NA
 923960 923961 M5005_Spy_1656 M5005_Spy_1657     TRUE 0.679 13.000 0.000 NA   NA
 923961 923962 M5005_Spy_1657 M5005_Spy_1658   cysE FALSE 0.060 194.000 0.000 NA   NA
 923962 923963 M5005_Spy_1658 M5005_Spy_1659 cysE   TRUE 0.900 9.000 0.097 NA   NA
 923963 923964 M5005_Spy_1659 M5005_Spy_1660     TRUE 0.908 -7.000 0.009 NA   NA
 923964 923965 M5005_Spy_1660 M5005_Spy_1661     FALSE 0.028 281.000 0.000 1.000 N NA
 923965 923966 M5005_Spy_1661 M5005_Spy_1662     FALSE 0.283 156.000 0.056 1.000   NA
 923966 923967 M5005_Spy_1662 M5005_Spy_1663     TRUE 0.976 27.000 0.241 0.019   NA
 923967 923968 M5005_Spy_1663 M5005_Spy_1664     TRUE 0.988 -7.000 0.048 0.012 N NA
 923968 923969 M5005_Spy_1664 M5005_Spy_1665     FALSE 0.176 225.000 0.143 NA   NA
 923969 923970 M5005_Spy_1665 M5005_Spy_1666     TRUE 0.885 -16.000 0.002 NA   NA
 923970 923971 M5005_Spy_1666 M5005_Spy_1667     FALSE 0.093 158.000 0.000 NA   NA
 923972 923973 M5005_Spy_1668 M5005_Spy_1669   def FALSE 0.154 101.000 0.000 NA   NA
 923974 923975 M5005_Spy_1670 M5005_Spy_1671     TRUE 0.670 131.000 0.414 1.000   NA
 923975 923976 M5005_Spy_1671 M5005_Spy_1672   polC FALSE 0.334 110.000 0.020 1.000 N NA
 923976 923977 M5005_Spy_1672 M5005_Spy_1673 polC proS FALSE 0.338 255.000 0.070 0.043 N NA
 923977 923978 M5005_Spy_1673 M5005_Spy_1674 proS   FALSE 0.194 198.000 0.095 1.000 N NA
 923978 923979 M5005_Spy_1674 M5005_Spy_1675   cdsA FALSE 0.457 73.000 0.040 1.000 N NA
 923979 923980 M5005_Spy_1675 M5005_Spy_1676 cdsA uppS TRUE 0.965 13.000 0.113 1.000 Y NA
 923980 923981 M5005_Spy_1676 M5005_Spy_1677 uppS yajC FALSE 0.090 219.000 0.007 NA N NA
 923981 923982 M5005_Spy_1677 M5005_Spy_1678 yajC   FALSE 0.239 116.000 0.006 NA N NA
 923982 923983 M5005_Spy_1678 M5005_Spy_1679     FALSE 0.096 142.000 0.000 NA N NA
 923983 923984 M5005_Spy_1679 M5005_Spy_1680   pulA TRUE 0.994 -37.000 0.160 0.001   NA
 923984 923985 M5005_Spy_1680 M5005_Spy_1681 pulA dexB TRUE 0.625 171.000 0.049 0.020   NA
 923985 923986 M5005_Spy_1681 M5005_Spy_1682 dexB msmK TRUE 0.707 129.000 0.171 1.000 Y NA
 923986 923987 M5005_Spy_1682 M5005_Spy_1683 msmK lrp FALSE 0.083 298.000 0.071 1.000 N NA
 923989 923990 M5005_Spy_1685 M5005_Spy_1686   relA TRUE 0.917 15.000 0.177 1.000 N NA
 923990 923991 M5005_Spy_1686 M5005_Spy_1687 relA sclA FALSE 0.042 252.000 0.000 1.000   NA
 923995 923996 M5005_Spy_1691 M5005_Spy_1692     TRUE 0.837 83.000 0.610 1.000   NA
 923996 923997 M5005_Spy_1692 M5005_Spy_1693     TRUE 0.990 -3.000 0.119 0.012   NA
 923997 923998 M5005_Spy_1693 M5005_Spy_1694     FALSE 0.018 358.000 0.000 NA   NA
 923998 923999 M5005_Spy_1694 M5005_Spy_1695     TRUE 0.960 0.000 0.227 NA   NA
 923999 924000 M5005_Spy_1695 M5005_Spy_1696     FALSE 0.424 71.000 0.013 NA   NA
 924001 924002 M5005_Spy_1697 M5005_Spy_1698   trpG TRUE 0.885 33.000 0.009 1.000 Y NA
 924002 924003 M5005_Spy_1698 M5005_Spy_1699 trpG   TRUE 0.731 33.000 0.035 1.000 N NA
 924003 924004 M5005_Spy_1699 M5005_Spy_T0063     FALSE 0.027 286.000 0.000 NA   NA
 924004 924005 M5005_Spy_T0063 M5005_Spy_1700     FALSE 0.120 139.000 0.000 NA   NA
 924005 924006 M5005_Spy_1700 M5005_Spy_1701   flaR TRUE 0.607 55.000 0.062 1.000   NA
 924006 924007 M5005_Spy_1701 M5005_Spy_1702 flaR smeZ FALSE 0.044 249.000 0.000 1.000   NA
 924009 924010 M5005_Spy_1704 M5005_Spy_1705 dppA dppB TRUE 0.802 113.000 0.000 0.030 Y NA
 924010 924011 M5005_Spy_1705 M5005_Spy_1706 dppB dppC TRUE 0.999 -3.000 1.000 0.030 Y NA
 924011 924012 M5005_Spy_1706 M5005_Spy_1707 dppC dppD TRUE 0.984 12.000 0.333 1.000 Y NA
 924012 924013 M5005_Spy_1707 M5005_Spy_1708 dppD dppE TRUE 0.999 -16.000 0.750 0.020 Y NA
 924014 924015 M5005_Spy_1709 M5005_Spy_1710     FALSE 0.083 169.000 0.000 NA   NA
 924015 924016 M5005_Spy_1710 M5005_Spy_1711   lmb TRUE 0.679 13.000 0.000 NA   NA
 924016 924017 M5005_Spy_1711 M5005_Spy_1712 lmb   FALSE 0.074 178.000 0.000 1.000 N NA
 924017 924018 M5005_Spy_1712 M5005_Spy_1713     FALSE 0.290 54.000 0.000 NA   NA
 924018 924019 M5005_Spy_1713 M5005_Spy_1714     FALSE 0.374 45.000 0.000 NA   NA
 924019 924020 M5005_Spy_1714 M5005_Spy_1715   scpA TRUE 0.569 97.000 0.000 0.061   NA
 924021 924022 M5005_Spy_1716 M5005_Spy_1717     TRUE 0.791 -21.000 0.000 NA   NA
 924023 924024 M5005_Spy_1718 M5005_Spy_1719 sic1.01 emm1.0 FALSE 0.063 189.000 0.000 NA   NA
 924024 924025 M5005_Spy_1719 M5005_Spy_1720 emm1.0 mga FALSE 0.066 185.000 0.000 NA   NA
 924027 924028 M5005_Spy_1722 M5005_Spy_1723   isp TRUE 0.916 79.000 1.000 NA   NA
 924028 924029 M5005_Spy_1723 M5005_Spy_1724 isp ihk TRUE 0.560 102.000 0.200 1.000   NA
 924029 924030 M5005_Spy_1724 M5005_Spy_1725 ihk irr TRUE 0.994 -3.000 0.500 1.000 Y NA
 924030 924031 M5005_Spy_1725 M5005_Spy_1726 irr   TRUE 0.615 94.000 0.267 1.000 N NA
 924031 924032 M5005_Spy_1726 M5005_Spy_1727     TRUE 0.988 13.000 0.467 1.000 Y NA
 924032 924033 M5005_Spy_1727 M5005_Spy_1728     TRUE 0.977 -13.000 0.385 NA N NA
 924033 924034 M5005_Spy_1728 M5005_Spy_1729     FALSE 0.127 423.000 0.333 NA   NA
 924034 924035 M5005_Spy_1729 M5005_Spy_1730     TRUE 0.523 27.000 0.000 NA   NA
 924037 924038 M5005_Spy_1732 M5005_Spy_1733     FALSE 0.279 56.000 0.000 NA   NA
 924038 924039 M5005_Spy_1733 M5005_Spy_1734     FALSE 0.149 107.000 0.000 NA   NA
 924039 924040 M5005_Spy_1734 M5005_Spy_1735   speB TRUE 0.982 2.000 0.000 0.001   NA
 924041 924042 M5005_Spy_1736 M5005_Spy_1737   rgg FALSE 0.027 284.000 0.000 NA   NA
 924044 924045 M5005_Spy_1739 M5005_Spy_1740     FALSE 0.102 152.000 0.000 NA   NA
 924046 924047 M5005_Spy_1741 M5005_Spy_1742 gldA mipB TRUE 0.721 57.000 0.211 1.000 N NA
 924047 924048 M5005_Spy_1742 M5005_Spy_1743 mipB pflD TRUE 0.960 13.000 0.368 1.000 N NA
 924048 924049 M5005_Spy_1743 M5005_Spy_1744 pflD   FALSE 0.133 255.000 0.132 1.000 N NA
 924049 924050 M5005_Spy_1744 M5005_Spy_1745     TRUE 0.999 10.000 0.889 0.012 Y NA
 924050 924051 M5005_Spy_1745 M5005_Spy_1746     TRUE 0.998 28.000 0.889 0.012 Y NA
 924051 924052 M5005_Spy_1746 M5005_Spy_1747