MicrobesOnline Operon Predictions for Prevotella ruminicola 23

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 10142647 10142648 PRU_0001 PRU_0002     FALSE 0.003 170.000 0.000 NA   0.228
 10142648 10142649 PRU_0002 PRU_0003     FALSE 0.390 81.000 0.000 NA   0.622
 10142649 10142650 PRU_0003 PRU_0004     TRUE 0.970 37.000 0.000 1.000   0.829
 10142650 10142651 PRU_0004 PRU_0005     FALSE 0.110 210.000 0.000 NA   NA
 10142651 10142652 PRU_0005 PRU_0006     FALSE 0.530 62.000 0.000 NA   NA
 10142652 10142653 PRU_0006 PRU_0007     TRUE 0.970 -3.000 0.292 NA   0.620
 10142653 10142654 PRU_0007 PRU_0008     TRUE 0.988 -16.000 0.031 NA   0.867
 10142654 10142655 PRU_0008 PRU_0009   alaS FALSE 0.159 92.000 0.000 1.000 N 0.527
 10142657 10142658 PRU_0011 PRU_0012 mdsD_1   FALSE 0.256 50.000 0.000 1.000   0.394
 10142658 10142659 PRU_0012 PRU_0013     TRUE 0.991 15.000 0.025 1.000 N 0.867
 10142659 10142660 PRU_0013 PRU_0014     TRUE 0.941 82.000 0.188 1.000   0.791
 10142660 10142661 PRU_0014 PRU_0015     TRUE 0.996 7.000 0.299 NA   0.816
 10142661 10142662 PRU_0015 PRU_0016     TRUE 0.992 43.000 0.098 NA   0.906
 10142662 10142663 PRU_0016 PRU_0017     TRUE 0.996 3.000 0.827 1.000 N 0.808
 10142664 10142665 PRU_0018 PRU_0019 surE lpxB TRUE 0.873 21.000 0.039 1.000   0.314
 10142665 10142666 PRU_0019 PRU_0020 lpxB   FALSE 0.034 52.000 0.000 NA   -0.138
 10142667 10142668 PRU_0022 PRU_0023     TRUE 0.987 4.000 0.000 1.000 Y 0.907
 10142668 10142669 PRU_0023 PRU_0024     TRUE 0.997 29.000 0.081 1.000 Y 0.868
 10142669 10142670 PRU_0024 PRU_0025     FALSE 0.031 124.000 0.000 1.000 N 0.421
 10142670 10142671 PRU_0025 PRU_0026     TRUE 0.983 -3.000 0.482 NA Y NA
 10142672 10142673 PRU_0027 PRU_0028   tig TRUE 0.817 90.000 0.004 1.000   0.820
 10142673 10142674 PRU_0028 PRU_0029 tig clpP TRUE 0.842 221.000 0.047 1.000 Y 0.892
 10142674 10142675 PRU_0029 PRU_0030 clpP clpX TRUE 0.996 6.000 0.069 1.000 Y 0.900
 10142675 10142676 PRU_0030 PRU_0031 clpX recQ_1 TRUE 0.995 26.000 0.022 0.012 N 0.910
 10142676 10142677 PRU_0031 PRU_0032 recQ_1 guaB TRUE 0.985 39.000 0.013 1.000 N 0.919
 10142677 10142678 PRU_0032 PRU_0033 guaB   TRUE 0.936 3.000 0.003 1.000 N 0.738
 10142678 10142679 PRU_0033 PRU_0034     TRUE 0.997 18.000 0.020 0.003 Y 0.964
 10142679 10142680 PRU_0034 PRU_0035     TRUE 0.996 29.000 0.120 NA   0.954
 10142680 10142681 PRU_0035 PRU_0036   mutL FALSE 0.116 10.000 0.002 NA   -0.011
 10142681 10142682 PRU_0036 PRU_0037 mutL   FALSE 0.265 96.000 0.000 NA   NA
 10142682 10142683 PRU_0037 PRU_0038     FALSE 0.502 65.000 0.000 NA   NA
 10142684 10142685 PRU_0039 PRU_0040 aat clpA TRUE 0.982 -22.000 0.087 1.000 Y 0.704
 10142685 10142686 PRU_0040 PRU_0041 clpA clpS TRUE 0.759 3.000 0.022 NA   0.341
 10142686 10142687 PRU_0041 PRU_0042 clpS   FALSE 0.176 122.000 0.000 NA   NA
 10142688 10142689 PRU_0043 PRU_0044     FALSE 0.615 70.000 0.084 NA   0.334
 10142689 10142690 PRU_0044 PRU_0045   cdsA TRUE 0.966 -7.000 0.038 1.000 N 0.755
 10142692 10142693 PRU_0047 PRU_0048     FALSE 0.182 99.000 0.000 NA   0.544
 10142694 10142695 PRU_0049 PRU_0050   asd TRUE 0.957 -10.000 0.000 NA   0.809
 10142696 10142697 PRU_0051 PRU_0052     TRUE 0.973 24.000 0.037 1.000 N 0.708
 10142697 10142698 PRU_0052 PRU_0053     TRUE 0.974 -3.000 0.009 NA   0.826
 10142699 10142700 PRU_0054 PRU_0055 asnS rluB TRUE 0.990 28.000 0.000 1.000 Y 0.884
 10142700 10142701 PRU_0055 PRU_0056 rluB purB TRUE 0.932 54.000 0.000 1.000 N 0.965
 10142701 10142702 PRU_0056 PRU_0057 purB   FALSE 0.235 105.000 0.000 NA   NA
 10142702 10142703 PRU_0057 PRU_0058     FALSE 0.308 87.000 0.000 NA   NA
 10142703 10142704 PRU_0058 PRU_0059     TRUE 0.998 17.000 0.198 0.041   0.861
 10142706 10142707 PRU_0061 PRU_0062     TRUE 0.984 12.000 0.000 NA   0.885
 10142707 10142708 PRU_0062 PRU_0063     FALSE 0.003 175.000 0.000 NA   -0.295
 10142708 10142709 PRU_0063 PRU_0064   dnaK FALSE 0.002 974.000 0.000 NA   0.192
 10142711 10142712 PRU_0066 PRU_0067 recA lys1 TRUE 0.764 41.000 0.004 1.000 N 0.529
 10142712 10142713 PRU_0067 PRU_0068 lys1   TRUE 0.745 57.000 0.014 NA   0.590
 10142715 10142716 PRU_0070 PRU_0071     TRUE 0.963 10.000 0.000 0.007 Y 0.644
 10142716 10142717 PRU_0071 PRU_0072     TRUE 0.987 -3.000 0.000 0.021 Y 0.886
 10142717 10142718 PRU_0072 PRU_0073     TRUE 0.972 2.000 0.000 0.021 Y 0.764
 10142719 10142720 PRU_0074 PRU_0075 frr rsgA TRUE 0.899 1.000 0.020 1.000   0.604
 10142720 10142721 PRU_0075 PRU_0076 rsgA   TRUE 0.626 35.000 0.000 1.000   0.457
 10142723 10142724 PRU_0078 PRU_0079     TRUE 0.997 28.000 0.549 NA   0.788
 10142724 10142725 PRU_0079 PRU_0080     FALSE 0.117 13.000 0.000 1.000   0.276
 10142727 10142728 PRU_0082 PRU_0083     FALSE 0.338 185.000 0.000 1.000 N 0.770
 10142728 10142729 PRU_0083 PRU_0084     TRUE 0.979 7.000 0.000 1.000   0.858
 10142729 10142730 PRU_0084 PRU_0085   rfbC_1 TRUE 0.661 346.000 0.000 0.007   0.937
 10142730 10142731 PRU_0085 PRU_0086 rfbC_1   TRUE 0.982 6.000 0.000 NA   0.917
 10142731 10142732 PRU_0086 PRU_0087     FALSE 0.529 328.000 0.000 NA   0.886
 10142732 10142733 PRU_0087 PRU_0088     TRUE 0.993 8.000 0.033 1.000   0.944
 10142733 10142734 PRU_0088 PRU_0089     TRUE 0.971 -3.000 0.000 NA   0.943
 10142734 10142735 PRU_0089 PRU_0090     TRUE 0.974 3.000 0.000 NA   0.968
 10142735 10142736 PRU_0090 PRU_0091     TRUE 0.968 -3.000 0.000 NA   0.967
 10142736 10142737 PRU_0091 PRU_0092     TRUE 0.970 -13.000 0.000 NA   0.983
 10142737 10142738 PRU_0092 PRU_0093     TRUE 0.992 -34.000 0.231 NA   0.786
 10142738 10142739 PRU_0093 PRU_0094     TRUE 0.969 -7.000 0.035 NA   0.760
 10142739 10142740 PRU_0094 PRU_0095     TRUE 0.968 -7.000 0.000 NA   0.980
 10142740 10142741 PRU_0095 PRU_0096     TRUE 0.836 103.000 0.008 NA   0.962
 10142741 10142742 PRU_0096 PRU_0097     TRUE 0.963 5.000 0.000 NA   0.791
 10142742 10142743 PRU_0097 PRU_0098     TRUE 0.915 -7.000 0.000 NA   0.747
 10142743 10142744 PRU_0098 PRU_0099     TRUE 0.933 55.000 0.000 NA   0.971
 10142744 10142745 PRU_0099 PRU_0100     TRUE 0.984 12.000 0.000 NA   0.958
 10142745 10142746 PRU_0100 PRU_0101     TRUE 0.954 5.000 0.000 1.000   0.772
 10142746 10142747 PRU_0101 PRU_0102     TRUE 0.993 12.000 0.029 1.000   0.877
 10142747 10142748 PRU_0102 PRU_0103     TRUE 0.999 12.000 0.477 0.007 Y 0.977
 10142748 10142749 PRU_0103 PRU_0104     TRUE 0.995 -15.000 0.086 1.000 Y 0.902
 10142749 10142750 PRU_0104 PRU_0105     FALSE 0.356 -13.000 0.000 NA   0.388
 10142752 10142753 PRU_0107 PRU_0108     TRUE 0.679 128.000 0.000 NA   0.912
 10142753 10142754 PRU_0108 PRU_0109     FALSE 0.577 489.000 0.000 0.077   0.859
 10142754 10142755 PRU_0109 PRU_0110     TRUE 0.643 142.000 0.000 NA   0.897
 10142755 10142756 PRU_0110 PRU_0111     TRUE 0.985 16.000 0.000 NA   0.927
 10142756 10142757 PRU_0111 PRU_0112     FALSE 0.003 160.000 0.000 1.000   -0.392
 10142757 10142758 PRU_0112 PRU_0113     TRUE 0.924 -6.000 0.000 0.002 Y 0.608
 10142759 10142760 PRU_0114 PRU_0115     TRUE 0.749 -7.000 0.022 1.000   0.348
 10142761 10142762 PRU_0116 PRU_0117 nagB   FALSE 0.364 50.000 0.000 1.000   0.446
 10142762 10142763 PRU_0117 PRU_0118     FALSE 0.168 48.000 0.000 1.000   0.354
 10142763 10142764 PRU_0118 PRU_0119     TRUE 0.644 45.000 0.048 1.000   0.103
 10142764 10142765 PRU_0119 PRU_0120     FALSE 0.123 24.000 0.000 1.000   -0.100
 10142770 10142771 PRU_0125 PRU_0126 luxS   TRUE 0.948 43.000 0.076 1.000 N 0.670
 10142771 10142772 PRU_0126 PRU_0127     FALSE 0.066 167.000 0.000 1.000 N 0.532
 10142773 10142774 PRU_0128 PRU_0129     TRUE 0.697 46.000 0.000 NA   NA
 10142774 10142775 PRU_0129 PRU_0130     TRUE 0.794 86.000 0.000 1.000   0.843
 10142775 10142776 PRU_0130 PRU_0131     TRUE 0.906 75.000 0.164 1.000   0.726
 10142778 10142779 PRU_0136 PRU_0137     FALSE 0.250 232.000 0.000 NA   0.737
 10142779 10142780 PRU_0137 PRU_0138   ftsZ_1 FALSE 0.229 118.000 0.000 NA   0.632
 10142780 10142781 PRU_0138 PRU_0139 ftsZ_1   TRUE 0.979 -3.000 0.002 NA   0.917
 10142781 10142782 PRU_0139 PRU_0140     TRUE 0.980 4.000 0.000 NA   0.918
 10142782 10142783 PRU_0140 PRU_0141     FALSE 0.548 412.000 0.000 NA   0.921
 10142784 10142785 PRU_0142 PRU_0143     FALSE 0.428 67.000 0.000 NA   0.573
 10142786 10142787 PRU_0144 PRU_0145     FALSE 0.003 210.000 0.000 NA   0.267
 10142787 10142788 PRU_0145 PRU_0146     FALSE 0.587 196.000 0.000 NA   0.909
 10142788 10142789 PRU_0146 PRU_0148     FALSE 0.534 505.000 0.000 NA   0.951
 10142789 10142790 PRU_0148 PRU_0149     TRUE 0.880 52.000 0.000 NA   0.775
 10142790 10142791 PRU_0149 PRU_0150     TRUE 0.978 18.000 0.000 NA   0.821
 10142791 10142792 PRU_0150 PRU_0151     TRUE 0.911 14.000 0.000 NA   0.669
 10142792 10142793 PRU_0151 PRU_0152     FALSE 0.437 66.000 0.000 NA   0.574
 10142795 10142796 PRU_0154 PRU_0155     TRUE 0.995 36.000 0.750 NA   0.771
 10142797 10142798 PRU_0156 PRU_0157     FALSE 0.122 29.000 0.000 NA   0.049
 10142799 10142800 PRU_0158 PRU_0159     TRUE 0.997 15.000 0.176 NA   0.875
 10142800 10142801 PRU_0159 PRU_0160     TRUE 0.994 34.000 0.054 NA   0.924
 10142801 10142802 PRU_0160 PRU_0161   ispH TRUE 0.967 42.000 0.000 NA N 0.950
 10142802 10142803 PRU_0161 PRU_0162 ispH   FALSE 0.260 -3.000 0.000 NA   0.369
 10142803 10142804 PRU_0162 PRU_0163     FALSE 0.002 749.000 0.000 NA   0.080
 10142804 10142805 PRU_0163 PRU_0164     TRUE 0.756 0.000 0.073 1.000   0.065
 10142806 10142807 PRU_0165 PRU_0166   ilvE TRUE 0.985 9.000 0.000 1.000   0.913
 10142807 10142808 PRU_0166 PRU_0167 ilvE xseB FALSE 0.028 90.000 0.013 1.000   -0.051
 10142808 10142809 PRU_0167 PRU_0168 xseB xseA TRUE 0.955 7.000 0.059 0.001   0.409
 10142809 10142810 PRU_0168 PRU_0169 xseA   TRUE 0.985 19.000 0.247 1.000   0.634
 10142811 10142812 PRU_0170 PRU_0171     TRUE 0.982 7.000 0.278 NA N 0.637
 10142812 10142813 PRU_0171 PRU_0172     TRUE 0.983 -3.000 0.012 NA   0.912
 10142813 10142814 PRU_0172 PRU_0173   rfbB FALSE 0.117 15.000 0.000 NA   0.301
 10142814 10142815 PRU_0173 PRU_0174 rfbB   TRUE 0.908 -13.000 0.000 1.000   0.733
 10142815 10142816 PRU_0174 PRU_0175   purT FALSE 0.605 -3.000 0.000 1.000   0.502
 10142816 10142817 PRU_0175 PRU_0176 purT   TRUE 0.852 18.000 0.013 NA   0.425
 10142817 10142818 PRU_0176 PRU_0177     TRUE 0.809 -12.000 0.064 NA   0.245
 10142819 10142820 PRU_0178 PRU_0179     TRUE 0.998 31.000 0.508 0.002   0.775
 10142820 10142821 PRU_0179 PRU_0180     TRUE 0.987 34.000 0.508 NA Y 0.521
 10142822 10142823 PRU_0181 PRU_0182   rrsA FALSE 0.098 354.000 0.000 NA   NA
 10142823 10142824 PRU_0182 PRU_0183 rrsA   FALSE 0.126 162.000 0.000 NA   NA
 10142824 10142825 PRU_0183 PRU_0184     TRUE 0.865 26.000 0.000 NA   NA
 10142825 10142826 PRU_0184 PRU_0185   rrlA FALSE 0.112 202.000 0.000 NA   NA
 10142826 10142827 PRU_0185 PRU_0186 rrlA rrfA FALSE 0.147 137.000 0.000 NA   NA
 10142827 10142828 PRU_0186 PRU_0187 rrfA   FALSE 0.472 69.000 0.000 NA   NA
 10142829 10142830 PRU_0188 PRU_0189     FALSE 0.602 54.000 0.000 NA   NA
 10142831 10142832 PRU_0190 PRU_0191     TRUE 0.974 5.000 0.179 NA   0.618
 10142832 10142833 PRU_0191 PRU_0192     TRUE 0.993 0.000 0.138 NA   0.889
 10142833 10142834 PRU_0192 PRU_0193     TRUE 0.922 122.000 0.373 NA   0.835
 10142834 10142835 PRU_0193 PRU_0194     TRUE 0.994 8.000 0.098 NA   0.848
 10142835 10142836 PRU_0194 PRU_0195     TRUE 0.984 7.000 0.200 1.000 N 0.689
 10142836 10142837 PRU_0195 PRU_0196     FALSE 0.326 133.000 0.111 1.000 N 0.415
 10142837 10142838 PRU_0196 PRU_0197     TRUE 0.987 -28.000 0.013 1.000 N 0.932
 10142838 10142839 PRU_0197 PRU_0198     TRUE 0.993 31.000 0.056 1.000 N 0.854
 10142839 10142840 PRU_0198 PRU_0199     TRUE 0.956 -7.000 0.022 1.000 N 0.747
 10142841 10142842 PRU_0200 PRU_0201   recF TRUE 0.905 -7.000 0.089 NA   0.449
 10142843 10142844 PRU_0202 PRU_0203   ribH TRUE 0.982 6.000 0.000 1.000   0.939
 10142844 10142845 PRU_0203 PRU_0204 ribH   FALSE 0.271 124.000 0.000 1.000   0.679
 10142847 10142848 PRU_0206 PRU_0207     FALSE 0.117 13.000 0.000 NA   0.298
 10142848 10142849 PRU_0207 PRU_0208     FALSE 0.095 239.000 0.000 NA   0.592
 10142849 10142850 PRU_0208 PRU_0209     TRUE 0.856 30.000 0.000 NA   0.601
 10142850 10142851 PRU_0209 PRU_0210     TRUE 0.975 2.000 0.000 NA   0.923
 10142852 10142853 PRU_0211 PRU_0212     FALSE 0.545 68.000 0.000 NA   0.635
 10142853 10142854 PRU_0212 PRU_0213     FALSE 0.055 469.000 0.000 1.000   0.512
 10142855 10142856 PRU_0214 PRU_0215     TRUE 0.971 -19.000 0.000 NA   0.857
 10142856 10142857 PRU_0215 PRU_0216     FALSE 0.003 159.000 0.000 NA   -0.511
 10142857 10142858 PRU_0216 PRU_0217     FALSE 0.564 123.000 0.000 NA   0.804
 10142858 10142859 PRU_0217 PRU_0218     FALSE 0.556 301.000 0.000 NA   0.919
 10142859 10142860 PRU_0218 PRU_0219     TRUE 0.769 103.000 0.000 NA   0.954
 10142860 10142861 PRU_0219 PRU_0220     TRUE 0.976 38.000 0.000 NA   0.942
 10142861 10142862 PRU_0220 PRU_0221     TRUE 0.838 86.000 0.000 NA   0.911
 10142863 10142864 PRU_0222 PRU_0223     TRUE 0.987 7.000 0.000 0.005   0.856
 10142866 10142867 PRU_0225 PRU_0226     TRUE 0.914 29.000 0.064 NA   0.347
 10142867 10142868 PRU_0226 PRU_0227     TRUE 0.985 17.000 0.000 NA   0.932
 10142868 10142869 PRU_0227 PRU_0228     TRUE 0.731 86.000 0.000 NA   0.799
 10142873 10142874 PRU_0232 PRU_0234 rpe fmt FALSE 0.154 196.000 0.008 1.000 N 0.570
 10142874 10142875 PRU_0234 PRU_0235 fmt   FALSE 0.382 106.000 0.018 1.000 N 0.593
 10142875 10142876 PRU_0235 PRU_0236     FALSE 0.447 111.000 0.070 NA N 0.521
 10142876 10142877 PRU_0236 PRU_0237   prfC TRUE 0.618 113.000 0.000 NA Y 0.761
 10142877 10142878 PRU_0237 PRU_0238 prfC rfbD FALSE 0.554 473.000 0.023 1.000 N 0.800
 10142878 10142879 PRU_0238 PRU_0239 rfbD   TRUE 0.841 119.000 0.469 NA   0.724
 10142879 10142880 PRU_0239 PRU_0240     TRUE 0.994 9.000 0.191 NA   0.782
 10142881 10142882 PRU_0241 PRU_0242 glkA   FALSE 0.019 175.000 0.000 NA   0.379
 10142883 10142884 PRU_0243 PRU_0244   coaE TRUE 0.983 -18.000 0.019 NA   0.838
 10142884 10142885 PRU_0244 PRU_0245 coaE   TRUE 0.990 -3.000 0.054 NA   0.903
 10142885 10142886 PRU_0245 PRU_0246   yajC TRUE 0.990 1.000 0.047 NA   0.960
 10142886 10142887 PRU_0246 PRU_0247 yajC nusB TRUE 0.982 -7.000 0.026 NA N 0.840
 10142888 10142889 PRU_0248 PRU_0249 rplY pth TRUE 0.997 21.000 0.496 0.033 Y 0.707
 10142889 10142890 PRU_0249 PRU_0250 pth   TRUE 0.991 4.000 0.024 1.000 Y 0.838
 10142890 10142891 PRU_0250 PRU_0251     TRUE 0.982 15.000 0.000 1.000 N 0.878
 10142891 10142892 PRU_0251 PRU_0252     TRUE 0.682 47.000 0.000 NA   NA
 10142892 10142893 PRU_0252 PRU_0253     FALSE 0.568 79.000 0.013 NA   NA
 10142893 10142894 PRU_0253 PRU_0254     FALSE 0.151 701.000 0.000 1.000   0.662
 10142894 10142895 PRU_0254 PRU_0255     FALSE 0.614 118.000 0.083 0.050   0.586
 10142895 10142896 PRU_0255 PRU_0256     TRUE 0.913 71.000 0.163 NA   0.712
 10142896 10142897 PRU_0256 PRU_0257     FALSE 0.117 13.000 0.000 NA N 0.224
 10142898 10142899 PRU_0258 PRU_0259 pepT   FALSE 0.011 83.000 0.000 1.000   -0.297
 10142901 10142902 PRU_0261 PRU_0262     TRUE 0.984 2.000 0.800 NA   NA
 10142902 10142903 PRU_0262 PRU_0263     TRUE 0.739 89.000 0.000 NA   0.813
 10142903 10142904 PRU_0263 PRU_0264     TRUE 0.987 28.000 0.000 1.000   0.932
 10142905 10142906 PRU_0265 PRU_0266     TRUE 0.991 67.000 1.000 NA N 0.952
 10142906 10142907 PRU_0266 PRU_0267     TRUE 0.898 73.000 0.500 NA N NA
 10142908 10142909 PRU_0268 PRU_0269     TRUE 0.999 14.000 0.455 0.003   0.854
 10142909 10142910 PRU_0269 PRU_0270     TRUE 0.996 10.000 0.364 1.000   0.803
 10142911 10142912 PRU_0271 PRU_0272     TRUE 0.983 73.000 0.333 1.000   0.932
 10142912 10142913 PRU_0272 PRU_0273     TRUE 0.998 16.000 0.778 NA   0.968
 10142913 10142914 PRU_0273 PRU_0274     TRUE 0.997 35.000 0.571 NA   0.976
 10142914 10142915 PRU_0274 PRU_0275     TRUE 0.997 7.000 0.286 NA   0.940
 10142915 10142916 PRU_0275 PRU_0276     TRUE 0.925 58.000 0.000 NA   0.868
 10142916 10142917 PRU_0276 PRU_0277     TRUE 0.973 2.000 0.000 NA   0.958
 10142917 10142918 PRU_0277 PRU_0278     TRUE 0.757 -3.000 0.000 NA   0.606
 10142919 10142920 PRU_0279 PRU_0280     FALSE 0.010 87.000 0.000 NA   0.192
 10142923 10142924 PRU_0283 PRU_0284   pheC FALSE 0.005 118.000 0.000 1.000   -0.355
 10142925 10142926 PRU_0285 PRU_0286     FALSE 0.004 136.000 0.000 NA   -0.092
 10142926 10142927 PRU_0286 PRU_0287     TRUE 0.810 46.000 0.000 NA   0.683
 10142927 10142928 PRU_0287 PRU_0288     TRUE 0.804 89.000 0.000 NA   0.970
 10142928 10142929 PRU_0288 PRU_0289     FALSE 0.098 352.000 0.000 NA   NA
 10142929 10142930 PRU_0289 PRU_0291     FALSE 0.099 721.000 0.000 NA   NA
 10142930 10142931 PRU_0291 PRU_0292     TRUE 0.842 33.000 0.000 NA   NA
 10142932 10142933 PRU_0293 PRU_0294     FALSE 0.002 264.000 0.000 NA   0.186
 10142935 10142936 PRU_0296 PRU_0297   fabG TRUE 0.988 33.000 0.204 1.000 N 0.735
 10142936 10142937 PRU_0297 PRU_0298 fabG   TRUE 0.996 28.000 0.226 1.000 N 0.849
 10142937 10142938 PRU_0298 PRU_0299     TRUE 0.779 5.000 0.024 NA   0.300
 10142938 10142939 PRU_0299 PRU_0300     TRUE 0.978 -37.000 0.377 NA   NA
 10142939 10142940 PRU_0300 PRU_0301     TRUE 0.755 93.000 0.197 1.000   NA
 10142940 10142941 PRU_0301 PRU_0302     TRUE 0.926 1.000 0.008 1.000   0.699
 10142941 10142942 PRU_0302 PRU_0303     TRUE 0.725 94.000 0.046 NA   0.717
 10142942 10142943 PRU_0303 PRU_0304     TRUE 0.983 19.000 0.190 NA   0.637
 10142943 10142944 PRU_0304 PRU_0305     FALSE 0.400 84.000 0.000 NA   0.641
 10142944 10142945 PRU_0305 PRU_0306   groES FALSE 0.008 106.000 0.000 NA   0.330
 10142945 10142946 PRU_0306 PRU_0307 groES groL TRUE 0.986 81.000 0.774 1.000 Y 0.823
 10142946 10142947 PRU_0307 PRU_0308 groL sppA FALSE 0.037 230.000 0.000 1.000 Y 0.275
 10142947 10142948 PRU_0308 PRU_0309 sppA lpxK TRUE 0.991 17.000 0.042 1.000 N 0.829
 10142948 10142949 PRU_0309 PRU_0310 lpxK punA TRUE 0.992 -115.000 0.050 1.000 N 0.911
 10142949 10142950 PRU_0310 PRU_0311 punA thiL TRUE 0.950 -9.000 0.027 1.000 N 0.725
 10142950 10142951 PRU_0311 PRU_0312 thiL   FALSE 0.219 111.000 0.000 NA   NA
 10142951 10142952 PRU_0312 PRU_0313     FALSE 0.147 137.000 0.000 NA   NA
 10142953 10142954 PRU_0314 PRU_0315     TRUE 0.975 2.000 0.000 NA   0.907
 10142954 10142955 PRU_0315 PRU_0316     TRUE 0.866 27.000 0.000 NA   NA
 10142955 10142956 PRU_0316 PRU_0317     TRUE 0.756 -3.000 0.000 NA   NA
 10142956 10142957 PRU_0317 PRU_0318     TRUE 0.982 34.000 0.000 NA   0.915
 10142957 10142958 PRU_0318 PRU_0319     TRUE 0.970 -3.000 0.000 1.000 N 0.927
 10142958 10142959 PRU_0319 PRU_0320     TRUE 0.994 13.000 0.000 0.007 Y 0.897
 10142959 10142960 PRU_0320 PRU_0321     TRUE 0.917 -3.000 0.000 1.000 N 0.764
 10142963 10142964 PRU_0324 PRU_0325     FALSE 0.434 141.000 0.000 NA   0.775
 10142964 10142965 PRU_0325 PRU_0327     FALSE 0.478 546.000 0.000 NA   0.853
 10142966 10142967 PRU_0329 PRU_0330     TRUE 0.985 16.000 0.000 NA   0.904
 10142967 10142968 PRU_0330 PRU_0331     FALSE 0.026 115.000 0.000 NA   0.366
 10142968 10142969 PRU_0331 PRU_0332     FALSE 0.030 116.000 0.000 NA   0.375
 10142969 10142970 PRU_0332 PRU_0333     TRUE 0.914 -55.000 0.000 NA   0.728
 10142970 10142971 PRU_0333 PRU_0334     FALSE 0.116 10.000 0.000 NA   -0.158
 10142971 10142972 PRU_0334 PRU_0335     FALSE 0.540 217.000 0.000 NA   0.876
 10142972 10142973 PRU_0335 PRU_0336     TRUE 0.976 45.000 0.000 0.020   0.951
 10142973 10142974 PRU_0336 PRU_0337     TRUE 0.927 61.000 0.000 NA   0.946
 10142974 10142975 PRU_0337 PRU_0338     TRUE 0.986 12.000 0.000 NA   0.921
 10142975 10142976 PRU_0338 PRU_0339     TRUE 0.746 60.000 0.000 NA   0.723
 10142978 10142979 PRU_0341 PRU_0342     TRUE 0.972 1.000 0.000 NA   0.959
 10142980 10142981 PRU_0343 PRU_0344     FALSE 0.474 129.000 0.000 NA   0.780
 10142981 10142982 PRU_0344 PRU_0345     TRUE 0.985 15.000 0.000 NA   0.951
 10142982 10142983 PRU_0345 PRU_0346     TRUE 0.984 8.000 0.000 NA   0.937
 10142983 10142984 PRU_0346 PRU_0347     TRUE 0.976 39.000 0.000 NA   0.920
 10142984 10142985 PRU_0347 PRU_0348     FALSE 0.312 249.000 0.000 NA   0.764
 10142985 10142986 PRU_0348 PRU_0349     FALSE 0.503 172.000 0.000 NA   0.823
 10142988 10142989 PRU_0351 PRU_0353     FALSE 0.252 1012.000 0.000 NA   0.741
 10142989 10142990 PRU_0353 PRU_0354     TRUE 0.997 44.000 0.727 NA   0.932
 10142990 10142991 PRU_0354 PRU_0355     FALSE 0.602 165.000 0.000 NA   0.953
 10142992 10142993 PRU_0356 PRU_0357     TRUE 0.993 17.000 0.615 NA Y NA
 10142993 10142994 PRU_0357 PRU_0358     FALSE 0.268 208.000 0.000 0.073 Y NA
 10142994 10142995 PRU_0358 PRU_0359     TRUE 0.939 8.000 0.016 NA   0.627
 10142995 10142996 PRU_0359 PRU_0360     TRUE 0.991 -3.000 0.172 NA   0.818
 10142996 10142997 PRU_0360 PRU_0361     TRUE 0.980 7.000 0.000 NA   0.868
 10142997 10142998 PRU_0361 PRU_0362     TRUE 0.989 0.000 0.000 0.002 Y 0.957
 10142998 10142999 PRU_0362 PRU_0363     FALSE 0.002 734.000 0.000 NA   -0.392
 10142999 10143000 PRU_0363 PRU_0364     FALSE 0.089 136.000 0.000 NA   0.524
 10143000 10143001 PRU_0364 PRU_0365     TRUE 0.964 45.000 0.000 NA   0.943
 10143001 10143002 PRU_0365 PRU_0367     FALSE 0.356 748.000 0.000 NA   0.784
 10143004 10143005 PRU_0369 PRU_0370     TRUE 0.996 -3.000 0.339 NA   0.937
 10143005 10143006 PRU_0370 PRU_0372     FALSE 0.551 781.000 0.000 1.000   0.942
 10143006 10143007 PRU_0372 PRU_0373     FALSE 0.027 249.000 0.000 NA   0.423
 10143007 10143008 PRU_0373 PRU_0374     FALSE 0.004 136.000 0.000 NA   0.306
 10143008 10143009 PRU_0374 PRU_0375     TRUE 0.977 -3.000 0.300 NA   0.665
 10143010 10143011 PRU_0376 PRU_0377     FALSE 0.561 92.000 0.220 NA   0.327
 10143011 10143012 PRU_0377 PRU_0380     FALSE 0.002 1130.000 0.000 NA   0.101
 10143013 10143014 PRU_0381 PRU_0382     FALSE 0.008 94.000 0.000 NA   0.299
 10143015 10143016 PRU_0384 PRU_0385     TRUE 0.982 7.000 0.000 NA   0.891
 10143019 10143020 PRU_0388 PRU_0389 hisC hisD TRUE 0.999 22.000 0.294 0.004 Y 0.980
 10143020 10143021 PRU_0389 PRU_0390 hisD hisG TRUE 0.997 -3.000 0.171 0.004 Y 0.973
 10143023 10143024 PRU_0392 PRU_0393 rpiB   TRUE 0.956 103.000 0.144 1.000 Y 0.964
 10143024 10143025 PRU_0393 PRU_0394     FALSE 0.004 139.000 0.000 1.000 Y -0.508
 10143025 10143026 PRU_0394 PRU_0395     TRUE 0.914 115.000 0.070 1.000 Y 0.848
 10143026 10143027 PRU_0395 PRU_0396     TRUE 0.977 -16.000 0.000 1.000   0.908
 10143030 10143031 PRU_0399 PRU_0400 thiS thiE TRUE 0.986 -12.000 0.140 1.000 Y 0.724
 10143031 10143032 PRU_0400 PRU_0401 thiE thiG TRUE 0.988 -7.000 0.044 0.006 Y 0.755
 10143032 10143033 PRU_0401 PRU_0402 thiG thiC TRUE 0.997 21.000 0.019 0.006 Y 0.883
 10143033 10143034 PRU_0402 PRU_0403 thiC   TRUE 0.987 35.000 0.000 1.000 Y 0.889
 10143034 10143035 PRU_0403 PRU_0404   thiH TRUE 0.995 9.000 0.037 1.000 Y 0.874
 10143035 10143036 PRU_0404 PRU_0405 thiH   TRUE 0.954 -3.000 0.000 0.006 Y 0.720
 10143036 10143037 PRU_0405 PRU_0406   thiD TRUE 0.991 -9.000 0.011 0.006 Y 0.829
 10143038 10143039 PRU_0407 PRU_0408     FALSE 0.003 257.000 0.000 NA   -0.251
 10143039 10143040 PRU_0408 PRU_0409     FALSE 0.012 81.000 0.000 NA   0.118
 10143041 10143042 PRU_0410 PRU_0411     FALSE 0.095 205.000 0.000 NA N NA
 10143042 10143043 PRU_0411 PRU_0412     FALSE 0.002 270.000 0.000 1.000 N -0.115
 10143043 10143044 PRU_0412 PRU_0413     TRUE 0.978 -10.000 0.000 0.038   0.988
 10143044 10143045 PRU_0413 PRU_0414     FALSE 0.003 174.000 0.000 NA   -0.183
 10143046 10143047 PRU_0415 PRU_0416   bglX FALSE 0.002 418.000 0.000 NA   -0.619
 10143049 10143050 PRU_0418 PRU_0419     TRUE 0.993 15.000 0.047 1.000 Y 0.791
 10143050 10143051 PRU_0419 PRU_0420   araA TRUE 0.997 18.000 0.144 1.000 Y 0.982
 10143051 10143052 PRU_0420 PRU_0421 araA   TRUE 0.995 40.000 0.103 1.000 Y 0.968
 10143052 10143053 PRU_0421 PRU_0422     TRUE 0.997 6.000 0.371 1.000 N 0.914
 10143053 10143054 PRU_0422 PRU_0423     TRUE 0.998 16.000 0.333 1.000   0.949
 10143054 10143055 PRU_0423 PRU_0424   galM_1 TRUE 0.960 79.000 0.111 1.000   0.876
 10143055 10143056 PRU_0424 PRU_0425 galM_1 galK FALSE 0.027 207.000 0.000 1.000 Y 0.196
 10143056 10143057 PRU_0425 PRU_0426 galK   TRUE 0.984 27.000 0.057 NA Y 0.671
 10143057 10143058 PRU_0426 PRU_0427   galM_2 TRUE 0.998 37.000 0.500 NA Y 0.872
 10143058 10143059 PRU_0427 PRU_0428 galM_2 folC FALSE 0.022 108.000 0.015 1.000 N 0.014
 10143059 10143060 PRU_0428 PRU_0429 folC dnaJ TRUE 0.944 22.000 0.007 1.000 N 0.663
 10143060 10143061 PRU_0429 PRU_0430 dnaJ grpE TRUE 0.998 36.000 0.168 0.010 Y 0.926
 10143061 10143062 PRU_0430 PRU_0431 grpE   FALSE 0.319 83.000 0.012 1.000   0.422
 10143063 10143064 PRU_0432 PRU_0433     FALSE 0.560 1122.000 0.000 NA   0.917
 10143064 10143065 PRU_0433 PRU_0434     TRUE 0.952 72.000 0.000 0.027 Y 0.899
 10143065 10143066 PRU_0434 PRU_0435     TRUE 0.999 8.000 0.624 1.000 Y 0.888
 10143066 10143067 PRU_0435 PRU_0436     TRUE 0.993 0.000 0.015 0.010 Y 0.958
 10143067 10143068 PRU_0436 PRU_0437   rfbC_2 TRUE 0.995 0.000 0.133 1.000 Y 0.975
 10143068 10143069 PRU_0437 PRU_0438 rfbC_2   TRUE 0.982 7.000 0.000 NA   0.956
 10143069 10143070 PRU_0438 PRU_0439     TRUE 0.825 5.000 0.000 NA   NA
 10143070 10143071 PRU_0439 PRU_0440     TRUE 0.780 1.000 0.000 1.000   NA
 10143071 10143072 PRU_0440 PRU_0441     TRUE 0.865 25.000 0.000 NA   NA
 10143072 10143073 PRU_0441 PRU_0442     TRUE 0.756 -3.000 0.000 NA   NA
 10143073 10143074 PRU_0442 PRU_0443     TRUE 0.973 -25.000 0.000 NA N 0.961
 10143074 10143075 PRU_0443 PRU_0444     TRUE 0.996 -21.000 0.429 NA   0.984
 10143075 10143076 PRU_0444 PRU_0445   kdsA_1 TRUE 0.916 65.000 0.000 NA   0.944
 10143076 10143077 PRU_0445 PRU_0446 kdsA_1   TRUE 0.994 8.000 0.023 1.000 Y 0.982
 10143077 10143078 PRU_0446 PRU_0447     TRUE 0.980 -9.000 0.000 1.000 Y 0.978
 10143078 10143079 PRU_0447 PRU_0448     TRUE 0.971 0.000 0.000 NA   0.960
 10143079 10143080 PRU_0448 PRU_0449     TRUE 0.979 5.000 0.000 NA   0.962
 10143080 10143081 PRU_0449 PRU_0450     TRUE 0.960 45.000 0.000 1.000   0.971
 10143081 10143082 PRU_0450 PRU_0451     TRUE 0.980 -3.000 0.000 1.000 Y 0.958
 10143082 10143083 PRU_0451 PRU_0452     TRUE 0.987 5.000 0.000 1.000 Y 0.881
 10143083 10143084 PRU_0452 PRU_0453     FALSE 0.123 470.000 0.000 NA   0.636
 10143084 10143085 PRU_0453 PRU_0454     FALSE 0.039 93.000 0.000 NA   0.366
 10143086 10143087 PRU_0455 PRU_0456 hisB   TRUE 0.844 -3.000 0.000 NA   0.674
 10143088 10143089 PRU_0457 PRU_0458     TRUE 0.895 46.000 0.042 NA   0.612
 10143089 10143090 PRU_0458 PRU_0459     TRUE 0.951 -3.000 0.034 NA   0.717
 10143090 10143091 PRU_0459 PRU_0460     TRUE 0.635 31.000 0.000 NA   0.442
 10143092 10143093 PRU_0461 PRU_0462     FALSE 0.101 281.000 0.000 NA   NA
 10143094 10143095 PRU_0463 PRU_0464     FALSE 0.118 180.000 0.000 NA   NA
 10143095 10143096 PRU_0464 PRU_0465     FALSE 0.165 125.000 0.000 NA   NA
 10143096 10143097 PRU_0465 PRU_0466   msrA FALSE 0.015 74.000 0.000 1.000 N 0.009
 10143097 10143098 PRU_0466 PRU_0467 msrA   TRUE 0.978 4.000 0.000 NA   0.886
 10143098 10143099 PRU_0467 PRU_0468     FALSE 0.213 77.000 0.000 NA   0.487
 10143099 10143100 PRU_0468 PRU_0469     TRUE 0.695 116.000 0.000 0.007   0.792
 10143101 10143102 PRU_0470 PRU_0471     FALSE 0.002 941.000 0.000 1.000   0.241
 10143103 10143104 PRU_0472 PRU_0473     TRUE 0.989 59.000 0.500 1.000   0.840
 10143104 10143105 PRU_0473 PRU_0474     FALSE 0.092 45.000 0.000 1.000 N 0.365
 10143106 10143107 PRU_0475 PRU_0476     FALSE 0.064 -3.000 0.000 NA   -0.089
 10143107 10143108 PRU_0476 PRU_0477     TRUE 0.710 -3.000 0.074 NA   -0.016
 10143108 10143109 PRU_0477 PRU_0478     TRUE 0.993 29.000 0.031 NA   0.879
 10143109 10143110 PRU_0478 PRU_0479   lysA TRUE 0.989 30.000 0.008 NA N 0.880
 10143110 10143111 PRU_0479 PRU_0480 lysA lysC TRUE 0.985 50.000 0.034 1.000 Y 0.964
 10143111 10143112 PRU_0480 PRU_0481 lysC   TRUE 0.946 72.000 0.030 1.000 N 0.890
 10143112 10143113 PRU_0481 PRU_0482   hisIE TRUE 0.992 28.000 0.023 1.000 N 0.961
 10143113 10143114 PRU_0482 PRU_0483 hisIE hisF TRUE 0.999 33.000 0.430 0.004 Y 0.940
 10143114 10143115 PRU_0483 PRU_0484 hisF hisA TRUE 0.992 3.000 0.002 0.004 Y 0.875
 10143115 10143116 PRU_0484 PRU_0485 hisA hisH TRUE 0.993 -3.000 0.010 0.004 Y 0.907
 10143116 10143117 PRU_0485 PRU_0486 hisH purU TRUE 0.992 25.000 0.039 1.000 N 0.841
 10143118 10143119 PRU_0487 PRU_0488     TRUE 0.875 15.000 0.000 1.000   0.621
 10143120 10143121 PRU_0489 PRU_0490     TRUE 0.976 -19.000 0.000 NA   0.888
 10143121 10143122 PRU_0490 PRU_0491     FALSE 0.281 86.000 0.067 NA   0.058
 10143125 10143126 PRU_0494 PRU_0495     TRUE 0.992 -7.000 0.250 NA   0.798
 10143126 10143127 PRU_0495 PRU_0496     TRUE 0.818 14.000 0.000 NA   0.565
 10143127 10143128 PRU_0496 PRU_0497     FALSE 0.003 233.000 0.000 NA   0.156
 10143128 10143129 PRU_0497 PRU_0499     FALSE 0.075 195.000 0.000 NA   0.540
 10143129 10143130 PRU_0499 PRU_0500     FALSE 0.088 309.000 0.000 1.000 N NA
 10143130 10143131 PRU_0500 PRU_0501     TRUE 0.984 3.000 0.800 1.000 N NA
 10143131 10143132 PRU_0501 PRU_0502     TRUE 0.971 51.000 1.000 NA   NA
 10143134 10143135 PRU_0504 PRU_0505     FALSE 0.339 -6.000 0.000 1.000   0.381
 10143135 10143136 PRU_0505 PRU_0506     FALSE 0.044 388.000 0.000 0.006   0.304
 10143137 10143138 PRU_0507 PRU_0508     TRUE 0.972 -3.000 0.740 NA   0.500
 10143139 10143140 PRU_0509 PRU_0510     FALSE 0.023 253.000 0.000 NA   0.408
 10143142 10143143 PRU_0513 PRU_0514     FALSE 0.283 41.000 0.000 NA   0.375
 10143143 10143144 PRU_0514 PRU_0515     TRUE 0.977 23.000 0.571 NA   0.376
 10143144 10143145 PRU_0515 PRU_0516     TRUE 0.817 42.000 0.000 NA   0.651
 10143145 10143146 PRU_0516 PRU_0517     TRUE 0.930 13.000 0.000 NA   0.709
 10143146 10143147 PRU_0517 PRU_0518     TRUE 0.946 50.000 0.000 NA   0.877
 10143147 10143148 PRU_0518 PRU_0519     TRUE 0.985 30.000 0.000 NA   0.893
 10143148 10143149 PRU_0519 PRU_0520     FALSE 0.359 220.000 0.000 NA   0.776
 10143149 10143150 PRU_0520 PRU_0521     FALSE 0.547 239.000 0.000 NA   0.957
 10143150 10143151 PRU_0521 PRU_0522     TRUE 0.820 91.000 0.000 NA   0.915
 10143151 10143152 PRU_0522 PRU_0523     FALSE 0.052 636.000 0.000 NA   0.508
 10143154 10143155 PRU_0525 PRU_0526     TRUE 0.661 125.000 0.000 NA   0.965
 10143155 10143156 PRU_0526 PRU_0527     FALSE 0.002 838.000 0.000 NA   0.070
 10143156 10143157 PRU_0527 PRU_0528     TRUE 0.649 33.000 0.000 NA   0.459
 10143157 10143158 PRU_0528 PRU_0529     TRUE 0.918 3.000 0.000 NA   0.739
 10143158 10143159 PRU_0529 PRU_0530     TRUE 0.964 44.000 0.000 NA   0.887
 10143159 10143160 PRU_0530 PRU_0531     TRUE 0.977 -16.000 0.000 NA   0.925
 10143160 10143161 PRU_0531 PRU_0532     TRUE 0.967 44.000 0.000 NA   0.908
 10143161 10143162 PRU_0532 PRU_0533     TRUE 0.965 -7.000 0.000 NA   0.851
 10143162 10143163 PRU_0533 PRU_0534     FALSE 0.370 373.000 0.000 NA   0.790
 10143163 10143164 PRU_0534 PRU_0535     FALSE 0.537 4.000 0.000 NA   0.434
 10143166 10143167 PRU_0537 PRU_0538     TRUE 0.732 113.000 0.342 NA   0.602
 10143169 10143170 PRU_0540 PRU_0541 holA   FALSE 0.002 776.000 0.000 1.000   0.167
 10143170 10143171 PRU_0541 PRU_0542   pyrK FALSE 0.259 85.000 0.057 1.000   0.028
 10143171 10143172 PRU_0542 PRU_0543 pyrK pyrD TRUE 0.991 -12.000 0.592 1.000 N 0.749
 10143173 10143174 PRU_0544 PRU_0545 aroC   FALSE 0.508 26.000 0.008 1.000 N 0.193
 10143175 10143176 PRU_0546 PRU_0547     FALSE 0.039 153.000 0.000 NA   0.432
 10143176 10143177 PRU_0547 PRU_0548   pepC TRUE 0.848 92.000 0.000 0.040   0.874
 10143177 10143178 PRU_0548 PRU_0549 pepC   TRUE 0.656 -7.000 0.000 1.000   0.523
 10143178 10143179 PRU_0549 PRU_0550     TRUE 0.984 27.000 0.000 NA   0.876
 10143179 10143180 PRU_0550 PRU_0551   ilvC FALSE 0.014 225.000 0.000 NA N 0.406
 10143180 10143181 PRU_0551 PRU_0552 ilvC   FALSE 0.561 55.000 0.000 1.000 N 0.606
 10143181 10143182 PRU_0552 PRU_0553     TRUE 0.974 6.000 0.000 1.000 N 0.844
 10143183 10143184 PRU_0554 PRU_0555   recJ TRUE 0.944 16.000 0.025 0.011   0.461
 10143184 10143185 PRU_0555 PRU_0556 recJ   TRUE 0.921 0.000 0.005 1.000 N 0.722
 10143185 10143186 PRU_0556 PRU_0557     TRUE 0.997 20.000 0.108 0.040 Y 0.807
 10143188 10143189 PRU_0559 PRU_0560     TRUE 0.914 -3.000 0.000 1.000   0.750
 10143189 10143190 PRU_0560 PRU_0561     TRUE 0.731 -13.000 0.000 NA   0.567
 10143190 10143191 PRU_0561 PRU_0562     TRUE 0.897 -13.000 0.000 NA   0.723
 10143191 10143192 PRU_0562 PRU_0564   trmD FALSE 0.073 401.000 0.000 NA   0.559
 10143192 10143193 PRU_0564 PRU_0565 trmD   TRUE 0.967 -3.000 0.000 1.000   0.866
 10143197 10143198 PRU_0570 PRU_0571     TRUE 0.981 5.000 0.000 NA   0.902
 10143198 10143199 PRU_0571 PRU_0572     FALSE 0.234 126.000 0.000 NA   0.661
 10143199 10143200 PRU_0572 PRU_0573     TRUE 0.792 0.000 0.089 NA   0.108
 10143200 10143201 PRU_0573 PRU_0574     FALSE 0.003 197.000 0.000 NA   -0.036
 10143201 10143202 PRU_0574 PRU_0575     TRUE 0.771 103.000 0.000 NA   0.895
 10143203 10143204 PRU_0576 PRU_0577     TRUE 0.886 -19.000 0.000 NA   0.696
 10143206 10143207 PRU_0579 PRU_0580     TRUE 0.669 81.000 0.000 NA   0.758
 10143208 10143209 PRU_0581 PRU_0582 xpt pheS FALSE 0.042 48.000 0.000 1.000 N -0.029
 10143210 10143211 PRU_0583 PRU_0584   murB TRUE 0.936 34.000 0.011 NA   0.653
 10143211 10143212 PRU_0584 PRU_0585 murB   TRUE 0.990 -3.000 0.056 1.000   0.935
 10143213 10143214 PRU_0586 PRU_0587     TRUE 0.982 6.000 0.105 NA   0.724
 10143214 10143215 PRU_0587 PRU_0588     TRUE 0.998 4.000 0.737 NA   0.882
 10143216 10143217 PRU_0589 PRU_0590     TRUE 0.980 10.000 0.004 NA   0.796
 10143217 10143218 PRU_0590 PRU_0591   def TRUE 0.994 27.000 0.035 1.000 N 0.936
 10143218 10143219 PRU_0591 PRU_0592 def   TRUE 0.890 3.000 0.000 1.000   0.702
 10143219 10143220 PRU_0592 PRU_0593   thrS FALSE 0.427 83.000 0.000 1.000   0.647
 10143220 10143221 PRU_0593 PRU_0594 thrS infC TRUE 0.946 100.000 0.080 1.000 Y 0.960
 10143221 10143222 PRU_0594 PRU_0595 infC rpmI TRUE 0.986 80.000 0.652 1.000 Y 0.840
 10143222 10143223 PRU_0595 PRU_0596 rpmI rplT TRUE 0.999 35.000 0.928 0.019 Y 0.990
 10143224 10143225 PRU_0597 PRU_0598     FALSE 0.439 22.000 0.000 1.000 Y 0.113
 10143228 10143229 PRU_0601 PRU_0602     TRUE 0.794 -3.000 0.000 1.000   0.627
 10143229 10143230 PRU_0602 PRU_0603   pepO_1 TRUE 0.988 14.000 0.174 1.000   0.719
 10143230 10143231 PRU_0603 PRU_0604 pepO_1   FALSE 0.071 119.000 0.000 NA   0.456
 10143231 10143232 PRU_0604 PRU_0605     FALSE 0.003 165.000 0.000 NA   0.027
 10143232 10143233 PRU_0605 PRU_0606     FALSE 0.347 121.000 0.000 1.000 N 0.732
 10143233 10143234 PRU_0606 PRU_0607     FALSE 0.108 142.000 0.000 NA   0.559
 10143234 10143235 PRU_0607 PRU_0608     TRUE 0.975 31.000 0.400 NA   0.452
 10143235 10143236 PRU_0608 PRU_0609   metA TRUE 0.977 22.000 0.000 1.000 N 0.821
 10143236 10143237 PRU_0609 PRU_0610 metA   TRUE 0.864 6.000 0.053 1.000 N 0.342
 10143237 10143238 PRU_0610 PRU_0611     TRUE 0.977 -16.000 0.089 NA   0.736
 10143240 10143241 PRU_0613 PRU_0614   rprX FALSE 0.052 185.000 0.006 1.000 N 0.359
 10143241 10143242 PRU_0614 PRU_0615 rprX rprY TRUE 0.901 53.000 0.104 1.000 Y 0.473
 10143242 10143243 PRU_0615 PRU_0616 rprY rpsF FALSE 0.002 310.000 0.000 1.000 N 0.334
 10143243 10143244 PRU_0616 PRU_0617 rpsF rpsR TRUE 0.998 4.000 0.319 0.019 Y 0.986
 10143244 10143245 PRU_0617 PRU_0618 rpsR rpL9 TRUE 0.999 23.000 0.499 0.019 Y 0.881
 10143245 10143246 PRU_0618 PRU_0619 rpL9   FALSE 0.028 58.000 0.000 NA   -0.163
 10143246 10143247 PRU_0619 PRU_0620     FALSE 0.409 35.000 0.000 NA   0.386
 10143247 10143248 PRU_0620 PRU_0621     FALSE 0.139 121.000 0.000 0.050   0.445
 10143248 10143249 PRU_0621 PRU_0622     TRUE 0.923 -3.000 0.000 1.000   0.761
 10143249 10143250 PRU_0622 PRU_0623     TRUE 0.947 -10.000 0.000 NA   0.787
 10143250 10143251 PRU_0623 PRU_0625     FALSE 0.154 708.000 0.000 NA   0.667
 10143252 10143253 PRU_0626 PRU_0627     TRUE 0.969 0.000 0.000 NA   0.874
 10143253 10143254 PRU_0627 PRU_0628     FALSE 0.003 169.000 0.000 NA   -0.090
 10143255 10143256 PRU_0629 PRU_0630     FALSE 0.496 18.000 0.018 NA   0.001
 10143261 10143262 PRU_0635 PRU_0636 glyA pyrI TRUE 0.844 52.000 0.013 1.000 N 0.684
 10143262 10143263 PRU_0636 PRU_0637 pyrI pyrB TRUE 0.999 27.000 0.197 0.003 Y 0.928
 10143264 10143265 PRU_0638 PRU_0639   rrsB FALSE 0.098 361.000 0.000 NA   NA
 10143265 10143266 PRU_0639 PRU_0640 rrsB   FALSE 0.137 151.000 0.000 NA   NA
 10143266 10143267 PRU_0640 PRU_0641     TRUE 0.656 49.000 0.000 NA   NA
 10143267 10143268 PRU_0641 PRU_0642   rrlB FALSE 0.107 226.000 0.000 NA   NA
 10143268 10143269 PRU_0642 PRU_0643 rrlB rrfB FALSE 0.112 200.000 0.000 NA   NA
 10143271 10143272 PRU_0645 PRU_0646     FALSE 0.518 227.000 0.000 NA   0.864
 10143272 10143273 PRU_0646 PRU_0647     TRUE 0.982 14.000 0.000 NA   0.861
 10143273 10143274 PRU_0647 PRU_0648     TRUE 0.962 27.000 0.000 NA   0.764
 10143274 10143275 PRU_0648 PRU_0649     TRUE 0.690 -3.000 0.000 NA   0.558
 10143275 10143276 PRU_0649 PRU_0650     TRUE 0.981 34.000 0.000 NA   0.894
 10143279 10143280 PRU_0653 PRU_0654     FALSE 0.044 391.000 0.000 NA   0.487
 10143281 10143282 PRU_0655 PRU_0656     FALSE 0.002 654.000 0.000 NA   -0.067
 10143282 10143283 PRU_0656 PRU_0657     FALSE 0.053 236.000 0.000 NA   0.504
 10143283 10143284 PRU_0657 PRU_0658     FALSE 0.002 345.000 0.000 NA   -0.200
 10143285 10143286 PRU_0659 PRU_0661     FALSE 0.002 496.000 0.000 NA   -0.045
 10143287 10143288 PRU_0662 PRU_0664 mutT_1 mutT_2 TRUE 0.743 1612.000 0.000 0.017 Y 0.892
 10143288 10143289 PRU_0664 PRU_0665 mutT_2   FALSE 0.002 827.000 0.000 NA   -0.133
 10143289 10143290 PRU_0665 PRU_0666     TRUE 0.995 -3.000 0.222 NA   0.933
 10143290 10143291 PRU_0666 PRU_0667     TRUE 0.982 7.000 0.000 NA   0.885
 10143291 10143292 PRU_0667 PRU_0668     FALSE 0.264 184.000 0.000 NA   0.734
 10143292 10143293 PRU_0668 PRU_0670     FALSE 0.003 1662.000 0.000 NA   -0.236
 10143293 10143294 PRU_0670 PRU_0671   malP TRUE 0.983 74.000 0.412 1.000 Y 0.814
 10143295 10143296 PRU_0672 PRU_0673   prs FALSE 0.599 0.000 0.000 NA   0.496
 10143296 10143297 PRU_0673 PRU_0674 prs   TRUE 0.941 43.000 0.026 1.000 N 0.726
 10143298 10143299 PRU_0675 PRU_0676 fabD   TRUE 0.902 27.000 0.006 1.000 N 0.579
 10143302 10143303 PRU_0679 PRU_0680     TRUE 0.648 37.000 0.000 NA   0.494
 10143303 10143304 PRU_0680 PRU_0681     FALSE 0.006 112.000 0.000 NA N 0.282
 10143304 10143305 PRU_0681 PRU_0682     FALSE 0.123 24.000 0.000 NA N 0.357
 10143305 10143306 PRU_0682 PRU_0683     FALSE 0.482 257.000 0.000 1.000 N 0.860
 10143307 10143308 PRU_0684 PRU_0685 pyk dcp TRUE 0.884 73.000 0.000 1.000 N 0.905
 10143308 10143309 PRU_0685 PRU_0686 dcp   FALSE 0.073 130.000 0.000 1.000 N 0.513
 10143309 10143310 PRU_0686 PRU_0687     TRUE 0.999 16.000 0.933 NA   0.963
 10143314 10143315 PRU_0691 PRU_0692     TRUE 0.743 30.000 0.000 1.000   0.493
 10143315 10143316 PRU_0692 PRU_0693   lacZ TRUE 0.784 2.000 0.000 0.024   0.496
 10143316 10143317 PRU_0693 PRU_0694 lacZ uraA FALSE 0.078 545.000 0.000 1.000 N 0.593
 10143318 10143319 PRU_0695 PRU_0696 trmE   TRUE 0.947 28.000 0.022 1.000   0.606
 10143319 10143320 PRU_0696 PRU_0697     TRUE 0.938 13.000 0.011 NA   0.632
 10143320 10143321 PRU_0697 PRU_0698     TRUE 0.934 58.000 0.429 NA   0.583
 10143321 10143322 PRU_0698 PRU_0699   gltA_1 TRUE 0.973 -13.000 0.000 NA N 0.922
 10143322 10143323 PRU_0699 PRU_0700 gltA_1 serS TRUE 0.987 21.000 0.006 1.000 N 0.847
 10143323 10143324 PRU_0700 PRU_0701 serS rpmA FALSE 0.250 167.000 0.013 1.000 Y 0.482
 10143324 10143325 PRU_0701 PRU_0702 rpmA rplU TRUE 0.999 22.000 0.667 0.019 Y 0.895
 10143325 10143326 PRU_0702 PRU_0703 rplU   FALSE 0.002 460.000 0.000 1.000   -0.211
 10143326 10143327 PRU_0703 PRU_0704     TRUE 0.955 24.000 0.095 1.000   0.467
 10143327 10143328 PRU_0704 PRU_0705   miaA_1 FALSE 0.610 125.000 0.012 1.000 N 0.783
 10143328 10143329 PRU_0705 PRU_0706 miaA_1 lpxA TRUE 0.986 -13.000 0.017 1.000 N 0.902
 10143329 10143330 PRU_0706 PRU_0707 lpxA   TRUE 0.995 21.000 0.029 1.000 Y 0.981
 10143330 10143331 PRU_0707 PRU_0708   lpxD TRUE 0.998 34.000 0.148 0.002 Y 0.839
 10143331 10143332 PRU_0708 PRU_0709 lpxD   TRUE 0.967 38.000 0.154 1.000   0.626
 10143332 10143333 PRU_0709 PRU_0710   pyrF TRUE 0.966 30.000 0.027 1.000   0.669
 10143333 10143334 PRU_0710 PRU_0711 pyrF prfA TRUE 0.968 38.000 0.034 1.000 N 0.751
 10143335 10143336 PRU_0712 PRU_0714     FALSE 0.056 505.000 0.000 1.000 N 0.544
 10143336 10143337 PRU_0714 PRU_0715     TRUE 0.988 10.000 0.000 1.000 Y 0.851
 10143339 10143340 PRU_0717 PRU_0718     FALSE 0.173 79.000 0.000 NA   0.460
 10143340 10143341 PRU_0718 PRU_0719     FALSE 0.107 305.000 0.000 NA   0.613
 10143342 10143343 PRU_0720 PRU_0721     TRUE 0.982 9.000 0.005 1.000 N 0.815
 10143343 10143344 PRU_0721 PRU_0722   ubiE TRUE 0.991 12.000 0.020 1.000 N 0.960
 10143344 10143345 PRU_0722 PRU_0723 ubiE purC TRUE 0.992 28.000 0.025 1.000 N 0.967
 10143345 10143346 PRU_0723 PRU_0724 purC   TRUE 0.992 35.000 0.055 1.000 N 0.893
 10143347 10143348 PRU_0725 PRU_0726     FALSE 0.028 73.000 0.000 NA   0.334
 10143349 10143350 PRU_0727 PRU_0728     TRUE 0.985 31.000 0.000 NA   0.900
 10143351 10143352 PRU_0729 PRU_0730 leuA leuC TRUE 0.993 3.000 0.088 0.002 Y 0.755
 10143352 10143353 PRU_0730 PRU_0731 leuC leuD TRUE 0.991 86.000 0.449 0.001 Y 0.917
 10143353 10143354 PRU_0731 PRU_0732 leuD   TRUE 0.998 36.000 0.432 1.000 Y 0.856
 10143354 10143355 PRU_0732 PRU_0733   leuB TRUE 0.996 22.000 0.564 1.000 Y 0.733
 10143355 10143356 PRU_0733 PRU_0734 leuB   TRUE 0.993 8.000 0.047 1.000   0.857
 10143357 10143358 PRU_0735 PRU_0736   uxuA TRUE 0.997 10.000 0.500 1.000 Y 0.769
 10143358 10143359 PRU_0736 PRU_0737 uxuA   FALSE 0.011 83.000 0.000 1.000   0.257
 10143360 10143361 PRU_0738 PRU_0739     TRUE 0.757 0.000 0.000 1.000   0.594
 10143361 10143362 PRU_0739 PRU_0740   nadC TRUE 0.939 46.000 0.000 1.000   0.810
 10143362 10143363 PRU_0740 PRU_0741 nadC   TRUE 0.935 17.000 0.000 1.000 N 0.731
 10143363 10143364 PRU_0741 PRU_0742     FALSE 0.064 -3.000 0.000 1.000   -0.342
 10143364 10143365 PRU_0742 PRU_0743     FALSE 0.005 116.000 0.000 NA   -0.161
 10143367 10143368 PRU_0745 PRU_0746 map_1 gcp TRUE 0.862 2.000 0.008 0.038 N 0.507
 10143368 10143369 PRU_0746 PRU_0747 gcp   FALSE 0.533 103.000 0.012 NA   0.685
 10143369 10143370 PRU_0747 PRU_0748   rpmB TRUE 0.652 120.000 0.012 NA   0.776
 10143370 10143371 PRU_0748 PRU_0749 rpmB rpmG TRUE 0.999 5.000 0.332 0.019 Y 0.972
 10143371 10143372 PRU_0749 PRU_0750 rpmG   TRUE 0.995 13.000 0.079 NA   0.945
 10143372 10143373 PRU_0750 PRU_0751   ftsY FALSE 0.292 106.000 0.041 NA   0.375
 10143373 10143374 PRU_0751 PRU_0752 ftsY rimO TRUE 0.959 -7.000 0.028 1.000 N 0.744
 10143374 10143375 PRU_0752 PRU_0753 rimO   TRUE 0.984 -10.000 0.039 1.000 N 0.827
 10143375 10143376 PRU_0753 PRU_0754     TRUE 0.988 0.000 0.000 0.068 Y 0.941
 10143376 10143377 PRU_0754 PRU_0755     TRUE 0.909 68.000 0.000 1.000   0.953
 10143377 10143378 PRU_0755 PRU_0756     FALSE 0.425 145.000 0.000 1.000   0.773
 10143378 10143379 PRU_0756 PRU_0757     TRUE 0.998 31.000 0.764 NA   0.862
 10143379 10143380 PRU_0757 PRU_0758     TRUE 0.997 1.000 0.541 NA   0.929
 10143380 10143381 PRU_0758 PRU_0759     TRUE 0.998 11.000 0.538 NA   0.973
 10143381 10143382 PRU_0759 PRU_0760     TRUE 0.977 3.000 0.000 NA   0.907
 10143382 10143383 PRU_0760 PRU_0761     TRUE 0.945 0.000 0.082 0.018   0.499
 10143383 10143384 PRU_0761 PRU_0762     TRUE 0.929 7.000 0.020 1.000   0.593
 10143384 10143385 PRU_0762 PRU_0763     TRUE 0.935 -3.000 0.005 1.000   0.738
 10143386 10143387 PRU_0764 PRU_0765     TRUE 0.985 39.000 0.565 NA   0.655
 10143388 10143389 PRU_0766 PRU_0767 pepD_1   TRUE 0.992 0.000 0.107 NA   0.872
 10143389 10143390 PRU_0767 PRU_0768     FALSE 0.223 109.000 0.000 NA   NA
 10143390 10143391 PRU_0768 PRU_0769     TRUE 0.850 32.000 0.000 NA   NA
 10143391 10143392 PRU_0769 PRU_0770     TRUE 0.816 36.000 0.000 NA   NA
 10143392 10143393 PRU_0770 PRU_0771     FALSE 0.550 60.000 0.000 NA   NA
 10143394 10143395 PRU_0772 PRU_0773     FALSE 0.147 1006.000 0.000 NA   0.659
 10143395 10143396 PRU_0773 PRU_0774     TRUE 0.962 -3.000 0.000 NA   0.842
 10143396 10143397 PRU_0774 PRU_0775     FALSE 0.363 489.000 0.000 NA   0.788
 10143397 10143398 PRU_0775 PRU_0776     TRUE 0.974 4.000 0.000 NA   0.855
 10143400 10143401 PRU_0778 PRU_0779     FALSE 0.437 117.000 0.000 NA   0.745
 10143402 10143403 PRU_0781 PRU_0782     TRUE 0.980 28.000 0.000 NA   0.837
 10143403 10143404 PRU_0782 PRU_0783     FALSE 0.352 168.000 0.000 NA   0.762
 10143404 10143405 PRU_0783 PRU_0784     TRUE 0.681 127.000 0.000 NA   0.933
 10143405 10143406 PRU_0784 PRU_0785     TRUE 0.632 156.000 0.000 NA   0.928
 10143407 10143408 PRU_0786 PRU_0787     TRUE 0.975 -76.000 0.006 NA   0.802
 10143408 10143409 PRU_0787 PRU_0788     TRUE 0.983 27.000 0.019 NA   0.775
 10143409 10143410 PRU_0788 PRU_0789     TRUE 0.997 17.000 0.722 NA   0.793
 10143410 10143411 PRU_0789 PRU_0790     TRUE 0.942 -3.000 0.039 1.000   0.669
 10143411 10143412 PRU_0790 PRU_0791     TRUE 0.994 13.000 0.144 NA   0.802
 10143413 10143414 PRU_0792 PRU_0793     FALSE 0.529 90.000 0.193 1.000 N 0.320
 10143416 10143417 PRU_0795 PRU_0796     FALSE 0.267 97.000 0.000 1.000   NA
 10143417 10143418 PRU_0796 PRU_0797     TRUE 0.985 13.000 0.000 NA   0.937
 10143418 10143419 PRU_0797 PRU_0798   smpB TRUE 0.977 10.000 0.004 NA   0.777
 10143419 10143420 PRU_0798 PRU_0799 smpB metH TRUE 0.991 28.000 0.014 1.000 N 0.877
 10143420 10143421 PRU_0799 PRU_0800 metH   TRUE 0.986 11.000 0.000 1.000   0.915
 10143421 10143422 PRU_0800 PRU_0801     TRUE 0.713 69.000 0.000 NA   0.736
 10143424 10143425 PRU_0803 PRU_0804     TRUE 0.988 26.000 0.104 NA   0.736
 10143425 10143426 PRU_0804 PRU_0805     TRUE 0.997 -3.000 0.215 0.027 Y 0.968
 10143426 10143427 PRU_0805 PRU_0806     TRUE 0.999 30.000 0.538 0.027 Y 0.924
 10143427 10143428 PRU_0806 PRU_0807     TRUE 0.995 66.000 0.571 0.027 Y 0.978
 10143428 10143429 PRU_0807 PRU_0808     TRUE 0.998 4.000 0.362 0.027 Y 0.977
 10143429 10143430 PRU_0808 PRU_0809     TRUE 0.979 116.000 0.425 0.027 Y 0.935
 10143430 10143431 PRU_0809 PRU_0810     FALSE 0.009 90.000 0.000 NA   -0.125
 10143431 10143432 PRU_0810 PRU_0811   nadE TRUE 0.925 -3.000 0.018 NA   0.682
 10143434 10143435 PRU_0813 PRU_0814 gyrA   TRUE 0.663 71.000 0.000 1.000   0.718
 10143435 10143436 PRU_0814 PRU_0815     FALSE 0.003 153.000 0.000 NA   -0.131
 10143437 10143438 PRU_0816 PRU_0817     FALSE 0.046 1264.000 0.000 NA   0.485
 10143439 10143440 PRU_0818 PRU_0819     FALSE 0.003 170.000 0.000 NA   0.240
 10143440 10143441 PRU_0819 PRU_0820   pheT FALSE 0.009 92.000 0.000 NA N -0.292
 10143441 10143442 PRU_0820 PRU_0821 pheT   TRUE 0.981 37.000 0.002 NA   0.972
 10143442 10143443 PRU_0821 PRU_0822     TRUE 0.957 37.000 0.000 NA   0.789
 10143445 10143446 PRU_0824 PRU_0825 lepA   TRUE 0.877 47.000 0.004 NA N 0.724
 10143447 10143448 PRU_0826 PRU_0827   ruvC TRUE 0.971 -3.000 0.000 NA   0.898
 10143450 10143451 PRU_0829 PRU_0830     FALSE 0.116 10.000 0.000 NA   0.109
 10143451 10143452 PRU_0830 PRU_0831     FALSE 0.040 49.000 0.000 NA   0.172
 10143453 10143454 PRU_0832 PRU_0833     TRUE 0.901 8.000 0.002 NA   NA
 10143454 10143455 PRU_0833 PRU_0834   dnaB TRUE 0.805 37.000 0.000 NA   NA
 10143456 10143457 PRU_0835 PRU_0836   recN TRUE 0.915 59.000 0.002 1.000   0.800
 10143457 10143458 PRU_0836 PRU_0837 recN   TRUE 0.936 39.000 0.053 NA   0.611
 10143458 10143459 PRU_0837 PRU_0838     TRUE 0.929 -3.000 0.026 NA   0.664
 10143459 10143460 PRU_0838 PRU_0839   dnaN TRUE 0.989 19.000 0.025 0.005 Y 0.720
 10143463 10143464 PRU_0842 PRU_0843 lon tgt TRUE 0.993 1.000 0.168 1.000 N 0.868
 10143464 10143465 PRU_0843 PRU_0844 tgt   TRUE 0.952 -3.000 0.124 1.000   NA
 10143465 10143466 PRU_0844 PRU_0845     TRUE 0.867 0.000 0.007 1.000   NA
 10143466 10143467 PRU_0845 PRU_0846   ispE TRUE 0.985 21.000 0.000 1.000 N 0.941
 10143467 10143468 PRU_0846 PRU_0847 ispE galE TRUE 0.768 12.000 0.000 1.000 N 0.543
 10143468 10143469 PRU_0847 PRU_0848 galE   FALSE 0.002 730.000 0.000 NA N -0.339
 10143469 10143470 PRU_0848 PRU_0849     FALSE 0.537 -3.000 0.000 NA N 0.506
 10143471 10143472 PRU_0850 PRU_0851     FALSE 0.553 -3.000 0.000 1.000   0.469
 10143472 10143473 PRU_0851 PRU_0852     FALSE 0.002 277.000 0.000 NA   -0.041
 10143473 10143474 PRU_0852 PRU_0853     TRUE 0.756 -3.000 0.000 NA   NA
 10143476 10143477 PRU_0855 PRU_0856     TRUE 0.972 -12.000 0.000 NA   0.876
 10143477 10143478 PRU_0856 PRU_0857     FALSE 0.003 191.000 0.000 NA   0.151
 10143480 10143481 PRU_0859 PRU_0860     FALSE 0.474 93.000 0.134 NA   0.319
 10143481 10143482 PRU_0860 PRU_0861     TRUE 0.953 2.000 0.070 NA   0.642
 10143482 10143483 PRU_0861 PRU_0862     TRUE 0.997 24.000 0.119 NA   0.927
 10143484 10143485 PRU_0863 PRU_0864     TRUE 0.876 -3.000 0.222 NA   0.127
 10143485 10143486 PRU_0864 PRU_0865   secA FALSE 0.408 95.000 0.081 1.000   0.336
 10143486 10143487 PRU_0865 PRU_0866 secA   TRUE 0.920 8.000 0.000 1.000 N 0.713
 10143487 10143488 PRU_0866 PRU_0867   feoB FALSE 0.008 97.000 0.000 1.000 N 0.337
 10143488 10143489 PRU_0867 PRU_0868 feoB   FALSE 0.272 12.000 0.000 1.000   0.336
 10143490 10143491 PRU_0869 PRU_0870     TRUE 0.980 -10.000 0.571 NA   NA
 10143491 10143492 PRU_0870 PRU_0871     TRUE 0.977 -18.000 0.464 1.000 Y 0.436
 10143492 10143493 PRU_0871 PRU_0872     FALSE 0.025 61.000 0.000 1.000 N -0.267
 10143493 10143494 PRU_0872 PRU_0873     TRUE 0.993 49.000 0.152 1.000 Y 0.948
 10143495 10143496 PRU_0874 PRU_0875   uxaA TRUE 0.831 27.000 0.126 1.000 N -0.423
 10143496 10143497 PRU_0875 PRU_0876 uxaA   TRUE 0.889 -3.000 0.046 NA N 0.548
 10143497 10143498 PRU_0876 PRU_0877     TRUE 0.954 -3.000 0.046 NA   0.707
 10143501 10143502 PRU_0880 PRU_0881   ssb TRUE 0.907 -28.000 0.185 1.000   0.227
 10143502 10143503 PRU_0881 PRU_0882 ssb   TRUE 0.996 25.000 0.200 NA   0.848
 10143503 10143504 PRU_0882 PRU_0883     TRUE 0.783 39.000 0.000 NA   NA
 10143504 10143505 PRU_0883 PRU_0884     TRUE 0.864 20.000 0.000 NA   NA
 10143505 10143506 PRU_0884 PRU_0885     TRUE 0.865 24.000 0.000 NA   NA
 10143506 10143507 PRU_0885 PRU_0886     TRUE 0.629 51.000 0.000 NA   NA
 10143507 10143508 PRU_0886 PRU_0887   nspC FALSE 0.150 134.000 0.000 NA   NA
 10143508 10143509 PRU_0887 PRU_0888 nspC   TRUE 0.704 0.000 0.000 1.000 N 0.582
 10143509 10143510 PRU_0888 PRU_0889   carB FALSE 0.121 124.000 0.000 1.000 N 0.574
 10143510 10143511 PRU_0889 PRU_0890 carB carA TRUE 0.947 45.000 0.000 NA   0.823
 10143511 10143512 PRU_0890 PRU_0891 carA glmS TRUE 0.857 73.000 0.000 NA   0.839
 10143512 10143513 PRU_0891 PRU_0892 glmS   FALSE 0.127 161.000 0.000 NA   NA
 10143513 10143514 PRU_0892 PRU_0893     TRUE 0.850 32.000 0.000 NA   NA
 10143514 10143515 PRU_0893 PRU_0894   speG FALSE 0.331 84.000 0.000 NA   NA
 10143515 10143516 PRU_0894 PRU_0895 speG   TRUE 0.967 -3.000 0.091 NA   0.709
 10143516 10143517 PRU_0895 PRU_0896     TRUE 0.982 22.000 0.052 NA   0.731
 10143517 10143518 PRU_0896 PRU_0897   recR TRUE 0.977 7.000 0.017 NA   0.766
 10143518 10143519 PRU_0897 PRU_0898 recR   TRUE 0.863 -3.000 0.000 1.000   0.694
 10143519 10143520 PRU_0898 PRU_0899   ysxC TRUE 0.865 0.000 0.002 1.000   0.628
 10143521 10143522 PRU_0900 PRU_0901 rho   FALSE 0.070 1.000 0.000 1.000 N 0.247
 10143523 10143524 PRU_0903 PRU_0904 tilS   TRUE 0.943 -10.000 0.002 1.000   0.751
 10143524 10143525 PRU_0904 PRU_0905     TRUE 0.992 -19.000 0.161 1.000   0.813
 10143526 10143527 PRU_0906 PRU_0907     TRUE 0.960 3.000 0.490 1.000 N 0.430
 10143527 10143528 PRU_0907 PRU_0908     TRUE 0.858 17.000 0.000 NA   NA
 10143528 10143529 PRU_0908 PRU_0909     FALSE 0.203 115.000 0.000 NA   NA
 10143529 10143530 PRU_0909 PRU_0910     TRUE 0.739 43.000 0.000 NA   NA
 10143530 10143531 PRU_0910 PRU_0911     FALSE 0.101 299.000 0.000 NA   NA
 10143532 10143533 PRU_0912 PRU_0913     TRUE 0.985 18.000 0.000 NA   0.903
 10143533 10143534 PRU_0913 PRU_0914     FALSE 0.044 741.000 0.000 NA   0.484
 10143534 10143535 PRU_0914 PRU_0915     FALSE 0.002 793.000 0.000 NA   0.255
 10143535 10143536 PRU_0915 PRU_0916     FALSE 0.054 845.000 0.000 NA   0.513
 10143538 10143539 PRU_0918 PRU_0919     TRUE 0.998 -9.000 1.000 NA   0.954
 10143539 10143540 PRU_0919 PRU_0920     TRUE 0.801 74.000 0.000 NA   0.794
 10143540 10143541 PRU_0920 PRU_0921     FALSE 0.002 1079.000 0.000 NA   0.197
 10143541 10143542 PRU_0921 PRU_0922     FALSE 0.002 861.000 0.000 NA   0.274
 10143542 10143543 PRU_0922 PRU_0923     TRUE 0.993 0.000 0.250 NA   0.817
 10143544 10143545 PRU_0924 PRU_0925 umuD_1   TRUE 0.909 -15.000 0.000 1.000 N 0.741
 10143546 10143547 PRU_0926 PRU_0927     TRUE 0.971 -3.000 0.000 NA   0.946
 10143547 10143548 PRU_0927 PRU_0928     FALSE 0.550 354.000 0.000 NA   0.919
 10143548 10143549 PRU_0928 PRU_0929     TRUE 0.947 50.000 0.000 NA   0.880
 10143549 10143550 PRU_0929 PRU_0930     FALSE 0.152 941.000 0.000 NA   0.663
 10143550 10143551 PRU_0930 PRU_0931     TRUE 0.975 3.000 0.000 NA   0.955
 10143551 10143552 PRU_0931 PRU_0932     FALSE 0.535 565.000 0.000 NA   0.895
 10143552 10143553 PRU_0932 PRU_0933     FALSE 0.545 1026.000 0.000 NA   0.895
 10143553 10143554 PRU_0933 PRU_0934     FALSE 0.450 552.000 0.000 NA   0.829
 10143556 10143557 PRU_0936 PRU_0937     FALSE 0.046 311.000 0.000 NA   0.489
 10143557 10143558 PRU_0937 PRU_0938     TRUE 0.998 4.000 0.545 NA   0.912
 10143558 10143559 PRU_0938 PRU_0939     TRUE 0.996 10.000 0.182 NA   0.828
 10143559 10143560 PRU_0939 PRU_0940     FALSE 0.158 726.000 0.000 NA   0.671
 10143562 10143563 PRU_0942 PRU_0943     FALSE 0.004 613.000 0.000 NA   0.333
 10143563 10143564 PRU_0943 PRU_0944     FALSE 0.307 95.000 0.000 NA   0.627
 10143564 10143565 PRU_0944 PRU_0945     FALSE 0.004 132.000 0.000 NA   -0.059
 10143565 10143566 PRU_0945 PRU_0947     FALSE 0.002 1162.000 0.000 NA   0.217
 10143566 10143567 PRU_0947 PRU_0949     FALSE 0.560 1306.000 0.000 NA   0.933
 10143567 10143568 PRU_0949 PRU_0950     TRUE 0.984 23.000 0.000 NA   0.969
 10143568 10143569 PRU_0950 PRU_0952     FALSE 0.559 1115.000 0.000 NA   0.929
 10143569 10143570 PRU_0952 PRU_0953     TRUE 0.753 112.000 0.000 NA   0.912
 10143570 10143571 PRU_0953 PRU_0954     FALSE 0.006 111.000 0.000 NA   0.294
 10143572 10143573 PRU_0956 PRU_0957     FALSE 0.003 248.000 0.000 NA   0.156
 10143574 10143575 PRU_0958 PRU_0959     FALSE 0.483 742.000 0.000 NA   0.853
 10143576 10143577 PRU_0962 PRU_0963     TRUE 0.987 69.000 0.500 NA   0.882
 10143577 10143578 PRU_0963 PRU_0964     FALSE 0.009 323.000 0.000 NA   0.354
 10143578 10143579 PRU_0964 PRU_0965     FALSE 0.007 105.000 0.000 NA   0.329
 10143581 10143582 PRU_0967 PRU_0968     TRUE 0.837 84.000 0.000 NA   0.955
 10143582 10143583 PRU_0968 PRU_0969     TRUE 0.973 20.000 0.000 NA   0.795
 10143584 10143585 PRU_0970 PRU_0971     FALSE 0.020 68.000 0.000 NA   -0.596
 10143585 10143586 PRU_0971 PRU_0972     FALSE 0.117 17.000 0.000 NA   0.242
 10143586 10143587 PRU_0972 PRU_0973     FALSE 0.002 265.000 0.000 NA   -0.166
 10143588 10143589 PRU_0974 PRU_0975     TRUE 0.941 40.000 0.000 1.000 N 0.786
 10143591 10143592 PRU_0977 PRU_0978     TRUE 0.824 35.000 0.000 NA   NA
 10143595 10143596 PRU_0981 PRU_0982     FALSE 0.062 42.000 0.000 NA   -0.008
 10143596 10143597 PRU_0982 PRU_0983     FALSE 0.004 132.000 0.000 1.000 N 0.326
 10143597 10143598 PRU_0983 PRU_0984   hisS FALSE 0.047 123.000 0.024 1.000 N 0.044
 10143598 10143599 PRU_0984 PRU_0985 hisS   TRUE 0.970 28.000 0.000 NA   0.786
 10143599 10143600 PRU_0985 PRU_0986   purA TRUE 0.650 71.000 0.000 NA   0.712
 10143600 10143601 PRU_0986 PRU_0987 purA   TRUE 0.924 -3.000 0.054 1.000 N 0.615
 10143601 10143602 PRU_0987 PRU_0988     TRUE 0.793 63.000 0.183 NA   0.389
 10143602 10143603 PRU_0988 PRU_0989     FALSE 0.584 128.000 0.192 NA   0.595
 10143603 10143604 PRU_0989 PRU_0990     TRUE 0.850 3.000 0.115 1.000   0.110
 10143605 10143606 PRU_0991 PRU_0992 recQ_2   FALSE 0.004 148.000 0.000 1.000   -0.532
 10143606 10143607 PRU_0992 PRU_0993     TRUE 0.998 28.000 0.312 NA   0.955
 10143607 10143608 PRU_0993 PRU_0994     TRUE 0.985 7.000 0.154 NA   0.711
 10143609 10143610 PRU_0995 PRU_0996     FALSE 0.002 554.000 0.000 NA   0.317
 10143610 10143611 PRU_0996 PRU_0997     TRUE 0.964 -3.000 0.000 NA   0.856
 10143611 10143612 PRU_0997 PRU_0998     TRUE 0.666 117.000 0.000 NA   0.846
 10143612 10143613 PRU_0998 PRU_0999     TRUE 0.937 57.000 0.000 NA   0.946
 10143613 10143614 PRU_0999 PRU_1000     FALSE 0.002 392.000 0.000 NA   0.301
 10143616 10143617 PRU_1002 PRU_1003     TRUE 0.867 0.000 0.000 0.064 Y 0.520
 10143617 10143618 PRU_1003 PRU_1004     TRUE 0.980 -3.000 0.000 0.064   0.930
 10143618 10143619 PRU_1004 PRU_1005     FALSE 0.255 455.000 0.000 0.064   0.701
 10143619 10143620 PRU_1005 PRU_1006     FALSE 0.002 471.000 0.000 NA   0.199
 10143620 10143621 PRU_1006 PRU_1009     FALSE 0.010 1908.000 0.000 NA   0.355
 10143623 10143624 PRU_1011 PRU_1012     TRUE 0.985 17.000 0.000 NA   0.910
 10143625 10143626 PRU_1014 PRU_1015     TRUE 0.735 12.000 0.000 NA   0.497
 10143626 10143627 PRU_1015 PRU_1016   thrA FALSE 0.004 130.000 0.003 NA   -0.091
 10143627 10143628 PRU_1016 PRU_1017 thrA   TRUE 0.993 39.000 0.182 1.000 N 0.854
 10143628 10143629 PRU_1017 PRU_1018   thrC TRUE 0.938 75.000 0.034 1.000 N 0.888
 10143631 10143632 PRU_1020 PRU_1021 degP   FALSE 0.337 111.000 0.172 1.000 N 0.164
 10143632 10143633 PRU_1021 PRU_1022     TRUE 0.990 39.000 0.188 NA   0.784
 10143634 10143635 PRU_1023 PRU_1024     FALSE 0.184 121.000 0.000 1.000 N 0.624
 10143635 10143636 PRU_1024 PRU_1025     TRUE 0.934 28.000 0.000 0.001 Y 0.470
 10143636 10143637 PRU_1025 PRU_1026     FALSE 0.017 213.000 0.000 NA   0.381
 10143637 10143638 PRU_1026 PRU_1027     TRUE 0.976 45.000 0.037 NA   0.814
 10143639 10143640 PRU_1028 PRU_1030 prmA   FALSE 0.002 949.000 0.000 0.042 N -0.526
 10143640 10143641 PRU_1030 PRU_1031     FALSE 0.004 149.000 0.000 1.000   -0.108
 10143641 10143642 PRU_1031 PRU_1032     FALSE 0.241 103.000 0.000 NA   NA
 10143643 10143644 PRU_1033 PRU_1034     TRUE 0.976 5.000 0.000 NA   0.858
 10143644 10143645 PRU_1034 PRU_1035     TRUE 0.972 38.000 0.000 1.000   0.862
 10143645 10143646 PRU_1035 PRU_1036   serA TRUE 0.791 80.000 0.000 1.000 N 0.820
 10143646 10143647 PRU_1036 PRU_1037 serA   TRUE 0.978 37.000 0.000 NA   0.900
 10143647 10143648 PRU_1037 PRU_1038   serC TRUE 0.985 26.000 0.000 NA   0.957
 10143649 10143650 PRU_1039 PRU_1040     FALSE 0.064 -3.000 0.000 NA   -0.050
 10143650 10143651 PRU_1040 PRU_1041     TRUE 0.917 -3.000 0.000 NA   0.756
 10143652 10143653 PRU_1042 PRU_1043 mtgA   TRUE 0.871 72.000 0.041 0.039   0.684
 10143653 10143654 PRU_1043 PRU_1044     FALSE 0.004 146.000 0.000 1.000   -0.169
 10143654 10143655 PRU_1044 PRU_1045     FALSE 0.003 642.000 0.000 NA   0.329
 10143655 10143656 PRU_1045 PRU_1046     TRUE 0.966 -3.000 0.000 NA   0.867
 10143656 10143657 PRU_1046 PRU_1047     TRUE 0.636 117.000 0.000 NA   0.821
 10143657 10143658 PRU_1047 PRU_1048     TRUE 0.946 48.000 0.000 NA   0.858
 10143658 10143659 PRU_1048 PRU_1049     FALSE 0.114 467.000 0.000 NA   0.626
 10143661 10143662 PRU_1051 PRU_1052     FALSE 0.031 714.000 0.000 NA   0.443
 10143662 10143663 PRU_1052 PRU_1053     FALSE 0.571 230.000 0.000 NA   0.926
 10143663 10143664 PRU_1053 PRU_1054     TRUE 0.893 12.000 0.000 NA   0.643
 10143664 10143665 PRU_1054 PRU_1055     TRUE 0.972 -3.000 0.000 NA   0.915
 10143665 10143666 PRU_1055 PRU_1056     TRUE 0.982 -16.000 0.809 NA   0.557
 10143666 10143667 PRU_1056 PRU_1058     FALSE 0.003 1899.000 0.000 NA   -0.057
 10143667 10143668 PRU_1058 PRU_1059     FALSE 0.016 709.000 0.000 NA   0.384
 10143669 10143670 PRU_1060 PRU_1061   proS FALSE 0.002 327.000 0.000 1.000   -0.367
 10143671 10143672 PRU_1062 PRU_1063     FALSE 0.570 -3.000 0.054 NA   -0.208
 10143672 10143673 PRU_1063 PRU_1064     FALSE 0.387 57.000 0.000 NA   0.497
 10143673 10143674 PRU_1064 PRU_1065     TRUE 0.957 47.000 0.000 NA   0.892
 10143674 10143675 PRU_1065 PRU_1066     TRUE 0.980 24.000 0.000 NA   0.836
 10143675 10143676 PRU_1066 PRU_1067     TRUE 0.990 38.000 0.423 NA   0.741
 10143676 10143677 PRU_1067 PRU_1068     TRUE 0.997 30.000 0.157 1.000 N 0.942
 10143677 10143678 PRU_1068 PRU_1069   ileS TRUE 0.996 31.000 0.135 1.000 N 0.909
 10143680 10143681 PRU_1071 PRU_1072     FALSE 0.004 127.000 0.000 1.000   0.010
 10143683 10143684 PRU_1075 PRU_1076   ilvN TRUE 0.881 -7.000 0.054 1.000 N 0.489
 10143684 10143685 PRU_1076 PRU_1077 ilvN ilvB TRUE 0.999 15.000 0.207 0.001 Y 0.958
 10143685 10143686 PRU_1077 PRU_1078 ilvB ilvD TRUE 0.998 29.000 0.041 0.002 Y 0.907
 10143688 10143689 PRU_1080 PRU_1081 cobD cobQ TRUE 0.997 -7.000 0.092 0.006 Y 0.947
 10143689 10143690 PRU_1081 PRU_1082 cobQ cobJH TRUE 0.992 -3.000 0.007 0.006 Y 0.877
 10143690 10143691 PRU_1082 PRU_1083 cobJH   TRUE 0.979 7.000 0.000 1.000 N 0.973
 10143691 10143692 PRU_1083 PRU_1084     TRUE 0.947 20.000 0.000 1.000 N 0.744
 10143692 10143693 PRU_1084 PRU_1085     TRUE 0.998 29.000 0.917 1.000 N 0.839
 10143694 10143695 PRU_1086 PRU_1087 cobB cobL TRUE 0.963 -3.000 0.000 0.006 Y 0.741
 10143695 10143696 PRU_1087 PRU_1088 cobL cobM TRUE 0.984 -12.000 0.071 0.006 Y 0.672
 10143696 10143697 PRU_1088 PRU_1089 cobM cobKD TRUE 0.940 -3.000 0.045 0.006 Y 0.406
 10143698 10143699 PRU_1090 PRU_1091     TRUE 0.991 -3.000 0.786 1.000 Y 0.657
 10143700 10143701 PRU_1092 PRU_1093 cobS cobP TRUE 0.976 -12.000 0.092 1.000 Y 0.654
 10143701 10143702 PRU_1093 PRU_1094 cobP cobT TRUE 0.978 15.000 0.104 1.000 Y 0.550
 10143704 10143705 PRU_1096 PRU_1097     FALSE 0.003 153.000 0.000 1.000 N -0.029
 10143705 10143706 PRU_1097 PRU_1098     TRUE 0.983 7.000 0.000 1.000   0.896
 10143707 10143708 PRU_1099 PRU_1100     TRUE 0.870 23.000 0.000 NA   0.609
 10143710 10143711 PRU_1102 PRU_1103 eno   FALSE 0.092 155.000 0.000 1.000 N 0.570
 10143711 10143712 PRU_1103 PRU_1104     FALSE 0.053 157.000 0.000 NA   0.465
 10143712 10143713 PRU_1104 PRU_1105     FALSE 0.369 46.000 0.000 NA   0.430
 10143715 10143716 PRU_1107 PRU_1108     FALSE 0.104 33.000 0.000 NA   0.013
 10143716 10143717 PRU_1108 PRU_1109     TRUE 0.982 35.000 0.600 NA   0.543
 10143717 10143718 PRU_1109 PRU_1110     FALSE 0.003 206.000 0.000 NA   -0.035
 10143718 10143719 PRU_1110 PRU_1111     TRUE 0.990 32.000 0.000 0.007   0.940
 10143720 10143721 PRU_1112 PRU_1113     FALSE 0.003 208.000 0.000 NA   -0.462
 10143721 10143722 PRU_1113 PRU_1114     TRUE 0.771 99.000 0.000 NA   0.964
 10143723 10143724 PRU_1115 PRU_1116     TRUE 0.900 0.000 0.000 NA   0.735
 10143724 10143725 PRU_1116 PRU_1117     FALSE 0.555 359.000 0.000 1.000   0.923
 10143725 10143726 PRU_1117 PRU_1118     TRUE 0.971 -3.000 0.000 NA   0.951
 10143726 10143727 PRU_1118 PRU_1120     FALSE 0.524 514.000 0.000 NA   0.959
 10143727 10143728 PRU_1120 PRU_1121     TRUE 0.984 7.000 0.000 1.000   0.919
 10143728 10143729 PRU_1121 PRU_1122     TRUE 0.756 -3.000 0.000 NA   NA
 10143729 10143730 PRU_1122 PRU_1123     FALSE 0.097 475.000 0.000 NA   NA
 10143730 10143731 PRU_1123 PRU_1124     FALSE 0.002 411.000 0.000 NA   -0.295
 10143731 10143732 PRU_1124 PRU_1125     FALSE 0.058 86.000 0.000 NA   0.378
 10143732 10143733 PRU_1125 PRU_1126     TRUE 0.921 39.000 0.000 NA   0.747
 10143733 10143734 PRU_1126 PRU_1127     TRUE 0.818 74.000 0.000 1.000   0.803
 10143734 10143735 PRU_1127 PRU_1128     TRUE 0.868 22.000 0.000 1.000   0.604
 10143735 10143736 PRU_1128 PRU_1129     TRUE 0.920 12.000 0.000 1.000   0.683
 10143736 10143737 PRU_1129 PRU_1130     FALSE 0.003 160.000 0.000 1.000   0.276
 10143737 10143738 PRU_1130 PRU_1131     FALSE 0.401 533.000 0.000 1.000   0.802
 10143740 10143741 PRU_1133 PRU_1134     FALSE 0.592 187.000 0.000 NA   0.935
 10143746 10143747 PRU_1142 PRU_1145 panE   FALSE 0.002 1062.000 0.000 NA   -0.237
 10143748 10143749 PRU_1146 PRU_1147     TRUE 0.929 1.000 0.000 1.000 N 0.769
 10143749 10143750 PRU_1147 PRU_1148     TRUE 0.861 78.000 0.000 NA   0.962
 10143750 10143751 PRU_1148 PRU_1149     TRUE 0.619 131.000 0.000 NA   0.983
 10143751 10143752 PRU_1149 PRU_1150     TRUE 0.983 3.000 0.000 0.002   0.982
 10143752 10143753 PRU_1150 PRU_1151     TRUE 0.986 23.000 0.000 1.000   0.954
 10143753 10143754 PRU_1151 PRU_1152   folD TRUE 0.989 31.000 0.007 1.000   0.967
 10143754 10143755 PRU_1152 PRU_1153 folD ffh TRUE 0.992 12.000 0.032 1.000 N 0.877
 10143755 10143756 PRU_1153 PRU_1154 ffh   TRUE 0.720 58.000 0.000 NA   0.688
 10143757 10143758 PRU_1155 PRU_1156     TRUE 0.718 50.000 0.000 1.000   0.644
 10143758 10143759 PRU_1156 PRU_1157     TRUE 0.965 30.000 0.000 0.001 Y 0.629
 10143760 10143761 PRU_1158 PRU_1159     TRUE 0.998 28.000 0.667 0.042   0.786
 10143762 10143763 PRU_1160 PRU_1161     TRUE 0.992 50.000 0.357 NA   0.957
 10143763 10143764 PRU_1161 PRU_1162     TRUE 0.967 38.000 0.000 NA   0.835
 10143766 10143767 PRU_1164 PRU_1165     TRUE 0.836 63.000 0.000 1.000 Y 0.737
 10143767 10143768 PRU_1165 PRU_1166     TRUE 0.991 12.000 0.000 1.000 Y 0.924
 10143768 10143769 PRU_1166 PRU_1167     TRUE 0.990 3.000 0.000 0.050 Y 0.911
 10143769 10143770 PRU_1167 PRU_1168     TRUE 0.959 1.000 0.000 1.000 Y 0.768
 10143770 10143771 PRU_1168 PRU_1169     TRUE 0.901 57.000 0.009 1.000 N 0.770
 10143772 10143773 PRU_1170 PRU_1171   tyrA TRUE 0.886 14.000 0.000 NA   0.634
 10143773 10143774 PRU_1171 PRU_1172 tyrA   TRUE 0.948 96.000 0.064 1.000 Y 0.954
 10143774 10143775 PRU_1172 PRU_1173     TRUE 0.999 29.000 0.289 1.000 Y 0.934
 10143775 10143776 PRU_1173 PRU_1174     TRUE 0.984 64.000 0.083 1.000 Y 0.917
 10143776 10143777 PRU_1174 PRU_1175     FALSE 0.002 317.000 0.000 NA   -0.589
 10143777 10143778 PRU_1175 PRU_1176     TRUE 0.935 -42.000 0.000 NA   0.755
 10143778 10143779 PRU_1176 PRU_1177     TRUE 0.968 3.000 0.000 NA   0.841
 10143779 10143780 PRU_1177 PRU_1179     FALSE 0.118 952.000 0.000 NA   0.626
 10143781 10143782 PRU_1181 PRU_1182     TRUE 0.815 42.000 0.000 NA   0.650
 10143783 10143784 PRU_1183 PRU_1184     TRUE 0.983 7.000 0.000 NA   0.935
 10143785 10143786 PRU_1185 PRU_1186 umuD_2   TRUE 0.863 -15.000 0.000 1.000 N 0.687
 10143786 10143787 PRU_1186 PRU_1187     FALSE 0.002 412.000 0.000 1.000   0.299
 10143787 10143788 PRU_1187 PRU_1188     FALSE 0.028 377.000 0.000 1.000   0.429
 10143788 10143789 PRU_1188 PRU_1189     FALSE 0.008 95.000 0.000 NA   0.101
 10143789 10143790 PRU_1189 PRU_1190     TRUE 0.982 6.000 0.000 NA   0.898
 10143791 10143792 PRU_1191 PRU_1192 atpG atpA TRUE 0.999 7.000 0.846 0.004 Y 0.917
 10143792 10143793 PRU_1192 PRU_1193 atpA atpH TRUE 0.999 7.000 0.864 0.004 Y 0.776
 10143793 10143794 PRU_1193 PRU_1194 atpH atpF TRUE 0.999 12.000 0.222 0.004 Y 0.987
 10143794 10143795 PRU_1194 PRU_1195 atpF atpE TRUE 0.994 55.000 0.402 0.004   0.964
 10143795 10143796 PRU_1195 PRU_1196 atpE atpB TRUE 0.993 72.000 0.628 0.004   0.916
 10143796 10143797 PRU_1196 PRU_1197 atpB   TRUE 0.881 37.000 0.004 NA   NA
 10143797 10143798 PRU_1197 PRU_1198     TRUE 0.903 16.000 0.002 NA   NA
 10143798 10143799 PRU_1198 PRU_1199   atpD TRUE 0.998 33.000 0.837 0.004   0.791
 10143799 10143800 PRU_1199 PRU_1200 atpD   FALSE 0.154 132.000 0.000 NA   0.607
 10143800 10143801 PRU_1200 PRU_1201   pfkA TRUE 0.647 122.000 0.000 NA   0.855
 10143801 10143802 PRU_1201 PRU_1202 pfkA   TRUE 0.934 22.000 0.400 1.000 N -0.094
 10143802 10143803 PRU_1202 PRU_1203     FALSE 0.117 14.000 0.000 1.000 N 0.088
 10143803 10143804 PRU_1203 PRU_1204     FALSE 0.006 113.000 0.000 1.000 N -0.268
 10143804 10143805 PRU_1204 PRU_1205   maf TRUE 0.974 7.000 0.000 NA N 0.834
 10143805 10143806 PRU_1205 PRU_1206 maf kdsC TRUE 0.990 43.000 0.086 NA   0.954
 10143806 10143807 PRU_1206 PRU_1207 kdsC   TRUE 0.889 74.000 0.000 1.000   0.904
 10143809 10143810 PRU_1209 PRU_1210     TRUE 0.982 18.000 0.000 NA   0.864
 10143813 10143814 PRU_1213 PRU_1214 maeB gdhA FALSE 0.285 232.000 0.000 NA   0.750
 10143814 10143815 PRU_1214 PRU_1215 gdhA rpsA FALSE 0.455 356.000 0.000 1.000 N 0.850
 10143815 10143816 PRU_1215 PRU_1216 rpsA htpG FALSE 0.002 595.000 0.000 1.000 N 0.185
 10143817 10143818 PRU_1217 PRU_1218     TRUE 0.969 -7.000 0.000 0.014   0.798
 10143818 10143819 PRU_1218 PRU_1219     FALSE 0.077 3.000 0.000 NA   0.289
 10143819 10143820 PRU_1219 PRU_1220     FALSE 0.007 212.000 0.000 NA   0.340
 10143820 10143821 PRU_1220 PRU_1221     TRUE 0.783 39.000 0.000 NA   NA
 10143821 10143822 PRU_1221 PRU_1222     TRUE 0.865 28.000 0.000 NA   NA
 10143822 10143823 PRU_1222 PRU_1223     FALSE 0.326 85.000 0.000 NA   NA
 10143823 10143824 PRU_1223 PRU_1224   dapA TRUE 0.978 4.000 0.000 1.000 N 0.940
 10143824 10143825 PRU_1224 PRU_1225 dapA   TRUE 0.980 18.000 0.000 NA N 0.856
 10143825 10143826 PRU_1225 PRU_1226     TRUE 0.986 43.000 0.259 NA Y 0.707
 10143826 10143827 PRU_1226 PRU_1227     TRUE 0.980 22.000 0.000 NA   0.824
 10143828 10143829 PRU_1228 PRU_1229     FALSE 0.005 122.000 0.000 NA   0.211
 10143829 10143830 PRU_1229 PRU_1230     FALSE 0.003 154.000 0.000 NA   -0.177
 10143830 10143831 PRU_1230 PRU_1231     TRUE 0.989 43.000 0.067 1.000   0.957
 10143831 10143832 PRU_1231 PRU_1232     FALSE 0.595 130.000 0.000 1.000 Y 0.782
 10143834 10143835 PRU_1234 PRU_1235   nifJ TRUE 0.718 69.000 0.185 1.000   0.302
 10143835 10143836 PRU_1235 PRU_1236 nifJ   FALSE 0.195 70.000 0.000 NA   0.438
 10143838 10143839 PRU_1238 PRU_1239     TRUE 0.866 21.000 0.000 NA   NA
 10143839 10143840 PRU_1239 PRU_1240     FALSE 0.358 81.000 0.000 NA   NA
 10143840 10143841 PRU_1240 PRU_1241     FALSE 0.166 160.000 0.000 0.062   0.562
 10143841 10143842 PRU_1241 PRU_1242     FALSE 0.004 130.000 0.000 1.000   0.076
 10143842 10143843 PRU_1242 PRU_1243   pflB FALSE 0.004 131.000 0.000 1.000 N 0.240
 10143843 10143844 PRU_1243 PRU_1244 pflB pflA TRUE 0.991 0.000 0.082 1.000 N 0.916
 10143845 10143846 PRU_1245 PRU_1246 nqrF nqrE TRUE 0.999 30.000 0.708 0.003 Y 0.961
 10143846 10143847 PRU_1246 PRU_1247 nqrE nqrD TRUE 0.998 4.000 0.279 0.003 Y 0.965
 10143847 10143848 PRU_1247 PRU_1248 nqrD nqrC TRUE 0.998 4.000 0.288 0.003 Y 0.991
 10143848 10143849 PRU_1248 PRU_1249 nqrC nqrB TRUE 0.999 -3.000 0.773 0.003 Y 0.982
 10143849 10143850 PRU_1249 PRU_1250 nqrB nqrA TRUE 0.999 28.000 0.747 0.003 Y 0.956
 10143852 10143853 PRU_1252 PRU_1253   truA TRUE 0.880 44.000 0.024 NA   NA
 10143853 10143854 PRU_1253 PRU_1254 truA   TRUE 0.971 -6.000 0.000 NA   0.885
 10143854 10143855 PRU_1254 PRU_1255     TRUE 0.792 3.000 0.000 NA   NA
 10143855 10143856 PRU_1255 PRU_1256     TRUE 0.986 -16.000 0.917 NA   NA
 10143856 10143857 PRU_1256 PRU_1257     TRUE 0.988 36.000 0.833 NA   NA
 10143857 10143858 PRU_1257 PRU_1258     TRUE 0.988 9.000 0.667 1.000 N NA
 10143858 10143859 PRU_1258 PRU_1259     TRUE 0.982 9.000 0.267 NA   NA
 10143860 10143861 PRU_1260 PRU_1261     TRUE 0.980 47.000 0.887 NA   0.639
 10143861 10143862 PRU_1261 PRU_1262   cydB TRUE 0.999 -3.000 0.962 0.025 Y 0.924
 10143863 10143864 PRU_1263 PRU_1264     FALSE 0.532 99.000 0.000 1.000 N 0.760
 10143864 10143865 PRU_1264 PRU_1265     FALSE 0.336 82.000 0.000 NA   0.600
 10143865 10143866 PRU_1265 PRU_1266     FALSE 0.002 377.000 0.000 NA   -0.345
 10143866 10143867 PRU_1266 PRU_1267     TRUE 0.986 14.000 0.250 NA   0.652
 10143867 10143868 PRU_1267 PRU_1268     FALSE 0.035 137.000 0.000 1.000 N 0.441
 10143869 10143870 PRU_1269 PRU_1270 topB   FALSE 0.003 205.000 0.000 NA   -0.608
 10143870 10143871 PRU_1270 PRU_1271     TRUE 0.985 31.000 0.000 NA   0.930
 10143871 10143872 PRU_1271 PRU_1272     TRUE 0.985 15.000 0.000 NA   0.940
 10143872 10143873 PRU_1272 PRU_1273     FALSE 0.024 62.000 0.000 NA   0.324
 10143874 10143875 PRU_1274 PRU_1275     TRUE 0.989 16.000 0.000 NA Y 0.870
 10143875 10143876 PRU_1275 PRU_1276     TRUE 0.970 -7.000 0.000 NA   0.965
 10143877 10143878 PRU_1277 PRU_1278   thyA TRUE 0.956 55.000 0.004 NA N 0.933
 10143878 10143879 PRU_1278 PRU_1279 thyA folA TRUE 0.970 28.000 0.046 1.000 N 0.672
 10143880 10143881 PRU_1280 PRU_1281     FALSE 0.002 583.000 0.000 NA   0.241
 10143883 10143884 PRU_1283 PRU_1284 dnaA   FALSE 0.097 331.000 0.000 NA N 0.622
 10143884 10143885 PRU_1284 PRU_1285     TRUE 0.998 18.000 0.827 NA N 0.857
 10143885 10143886 PRU_1285 PRU_1286   folB FALSE 0.442 100.000 0.012 1.000 N 0.634
 10143886 10143887 PRU_1286 PRU_1287 folB   TRUE 0.982 32.000 0.008 1.000   0.799
 10143889 10143890 PRU_1289 PRU_1290   kduI TRUE 0.986 2.000 0.269 1.000 Y 0.668
 10143890 10143891 PRU_1290 PRU_1291 kduI   TRUE 0.968 97.000 0.444 1.000 Y 0.820
 10143891 10143892 PRU_1291 PRU_1292     FALSE 0.087 4.000 0.000 1.000 N 0.186
 10143892 10143893 PRU_1292 PRU_1293     TRUE 0.893 -3.000 0.000 0.014   0.651
 10143893 10143894 PRU_1293 PRU_1294     FALSE 0.003 187.000 0.000 1.000   -0.069
 10143896 10143897 PRU_1297 PRU_1298     TRUE 0.926 21.000 0.002 NA   0.633
 10143897 10143898 PRU_1298 PRU_1299     TRUE 0.954 -3.000 0.000 NA   0.814
 10143899 10143900 PRU_1300 PRU_1301     TRUE 0.986 20.000 0.076 NA N 0.748
 10143900 10143901 PRU_1301 PRU_1302     FALSE 0.494 87.000 0.000 NA N 0.725
 10143901 10143902 PRU_1302 PRU_1303     TRUE 0.999 7.000 0.600 0.032 Y 0.912
 10143903 10143904 PRU_1304 PRU_1305     TRUE 0.951 4.000 0.066 NA   NA
 10143904 10143905 PRU_1305 PRU_1306     TRUE 0.980 34.000 0.107 NA Y 0.611
 10143905 10143906 PRU_1306 PRU_1307     TRUE 0.727 27.000 0.000 NA   0.483
 10143909 10143910 PRU_1310 PRU_1311     FALSE 0.095 -3.000 0.020 1.000 N -0.137
 10143911 10143912 PRU_1312 PRU_1313     FALSE 0.474 1.000 0.000 NA   0.432
 10143913 10143914 PRU_1314 PRU_1315     TRUE 0.997 4.000 0.274 NA   0.903
 10143914 10143915 PRU_1315 PRU_1316   pip TRUE 0.859 6.000 0.000 NA   0.630
 10143915 10143916 PRU_1316 PRU_1317 pip   TRUE 0.966 2.000 0.000 1.000   0.837
 10143916 10143917 PRU_1317 PRU_1318     FALSE 0.015 75.000 0.000 1.000   -0.071
 10143917 10143918 PRU_1318 PRU_1319     TRUE 0.996 4.000 0.667 NA   0.808
 11510181 10143910   PRU_1311     FALSE NA 6382.000 0.000 NA   NA
 11652544 10143910   PRU_1311     FALSE NA 6382.000 0.000 NA   NA
 11794936 10143910   PRU_1311     FALSE NA 6382.000 0.000 NA   NA
 11510182 10143910   PRU_1311     FALSE NA 6414.000 0.000 NA   NA
 11652545 10143910   PRU_1311     FALSE NA 6414.000 0.000 NA   NA
 11794937 10143910   PRU_1311     FALSE NA 6414.000 0.000 NA   NA
 11510183 10143910   PRU_1311     FALSE NA 6444.000 0.000 NA   NA
 11652546 10143910   PRU_1311     FALSE NA 6444.000 0.000 NA   NA
 11794938 10143910   PRU_1311     FALSE NA 6444.000 0.000 NA   NA
 11510184 10143910   PRU_1311     FALSE NA 6480.000 0.000 NA   NA
 11652547 10143910   PRU_1311     FALSE NA 6480.000 0.000 NA   NA
 11794939 10143910   PRU_1311     FALSE NA 6480.000 0.000 NA   NA
 11510185 10143910   PRU_1311     FALSE NA 6510.000 0.000 NA   NA
 11652548 10143910   PRU_1311     FALSE NA 6510.000 0.000 NA   NA
 11794940 10143910   PRU_1311     FALSE NA 6510.000 0.000 NA   NA
 11510186 10143910   PRU_1311     FALSE NA 6546.000 0.000 NA   NA
 11652549 10143910   PRU_1311     FALSE NA 6546.000 0.000 NA   NA
 11794941 10143910   PRU_1311     FALSE NA 6546.000 0.000 NA   NA
 11510187 10143910   PRU_1311     FALSE NA 6576.000 0.000 NA   NA
 11652550 10143910   PRU_1311     FALSE NA 6576.000 0.000 NA   NA
 11794942 10143910   PRU_1311     FALSE NA 6576.000 0.000 NA   NA
 11510188 10143910   PRU_1311     FALSE NA 6612.000 0.000 NA   NA
 11652551 10143910   PRU_1311     FALSE NA 6612.000 0.000 NA   NA
 11794943 10143910   PRU_1311     FALSE NA 6612.000 0.000 NA   NA
 11510189 10143910   PRU_1311     FALSE NA 6642.000 0.000 NA   NA
 11652552 10143910   PRU_1311     FALSE NA 6642.000 0.000 NA   NA
 11794944 10143910   PRU_1311     FALSE NA 6642.000 0.000 NA   NA
 11510190 10143910   PRU_1311     FALSE NA 6678.000 0.000 NA   NA
 11652553 10143910   PRU_1311     FALSE NA 6678.000 0.000 NA   NA
 11794945 10143910   PRU_1311     FALSE NA 6678.000 0.000 NA   NA
 11510191 10143910   PRU_1311     FALSE NA 6708.000 0.000 NA   NA
 11652554 10143910   PRU_1311     FALSE NA 6708.000 0.000 NA   NA
 11794946 10143910   PRU_1311     FALSE NA 6708.000 0.000 NA   NA
 11510192 10143910   PRU_1311     FALSE NA 6744.000 0.000 NA   NA
 11652555 10143910   PRU_1311     FALSE NA 6744.000 0.000 NA   NA
 11794947 10143910   PRU_1311     FALSE NA 6744.000 0.000 NA   NA
 11510193 10143910   PRU_1311     FALSE NA 6773.000 0.000 NA   NA
 11652556 10143910   PRU_1311     FALSE NA 6773.000 0.000 NA   NA
 11794948 10143910   PRU_1311     FALSE NA 6773.000 0.000 NA   NA
 11510194 10143910   PRU_1311     FALSE NA 6809.000 0.000 NA   NA
 11652557 10143910   PRU_1311     FALSE NA 6809.000 0.000 NA   NA
 11794949 10143910   PRU_1311     FALSE NA 6809.000 0.000 NA   NA
 11510195 10143910   PRU_1311     FALSE NA 6839.000 0.000 NA   NA
 11652558 10143910   PRU_1311     FALSE NA 6839.000 0.000 NA   NA
 11794950 10143910   PRU_1311     FALSE NA 6839.000 0.000 NA   NA
 11510196 10143910   PRU_1311     FALSE NA 6875.000 0.000 NA   NA
 11652559 10143910   PRU_1311     FALSE NA 6875.000 0.000 NA   NA
 11794951 10143910   PRU_1311     FALSE NA 6875.000 0.000 NA   NA
 11510197 10143910   PRU_1311     FALSE NA 6905.000 0.000 NA   NA
 11652560 10143910   PRU_1311     FALSE NA 6905.000 0.000 NA   NA
 11794952 10143910   PRU_1311     FALSE NA 6905.000 0.000 NA   NA
 11510198 10143910   PRU_1311     FALSE NA 6941.000 0.000 NA   NA
 11652561 10143910   PRU_1311     FALSE NA 6941.000 0.000 NA   NA
 11794953 10143910   PRU_1311     FALSE NA 6941.000 0.000 NA   NA
 11510199 10143910   PRU_1311     FALSE NA 6971.000 0.000 NA   NA
 11652562 10143910   PRU_1311     FALSE NA 6971.000 0.000 NA   NA
 11794954 10143910   PRU_1311     FALSE NA 6971.000 0.000 NA   NA
 11510200 10143910   PRU_1311     FALSE NA 7007.000 0.000 NA   NA
 11652563 10143910   PRU_1311     FALSE NA 7007.000 0.000 NA   NA
 11794955 10143910   PRU_1311     FALSE NA 7007.000 0.000 NA   NA
 11510201 10143910   PRU_1311     FALSE NA 7036.000 0.000 NA   NA
 11652564 10143910   PRU_1311     FALSE NA 7036.000 0.000 NA   NA
 11794956 10143910   PRU_1311     FALSE NA 7036.000 0.000 NA   NA
 11510202 10143910   PRU_1311     FALSE NA 7072.000 0.000 NA   NA
 11652565 10143910   PRU_1311     FALSE NA 7072.000 0.000 NA   NA
 11794957 10143910   PRU_1311     FALSE NA 7072.000 0.000 NA   NA
 11510203 10143910   PRU_1311     FALSE NA 7102.000 0.000 NA   NA
 11652566 10143910   PRU_1311     FALSE NA 7102.000 0.000 NA   NA
 11794958 10143910   PRU_1311     FALSE NA 7102.000 0.000 NA   NA
 11510204 10143910   PRU_1311     FALSE NA 7138.000 0.000 NA   NA
 11652567 10143910   PRU_1311     FALSE NA 7138.000 0.000 NA   NA
 11794959 10143910   PRU_1311     FALSE NA 7138.000 0.000 NA   NA
 11510212 10143910   PRU_1311     FALSE NA 7165.000 0.000 NA   NA
 11652575 10143910   PRU_1311     FALSE NA 7165.000 0.000 NA   NA
 11794967 10143910   PRU_1311     FALSE NA 7165.000 0.000 NA   NA
 11510205 10143910   PRU_1311     FALSE NA 7168.000 0.000 NA   NA
 11652568 10143910   PRU_1311     FALSE NA 7168.000 0.000 NA   NA
 11794960 10143910   PRU_1311     FALSE NA 7168.000 0.000 NA   NA
 11510206 10143910   PRU_1311     FALSE NA 7204.000 0.000 NA   NA
 11510213 10143910   PRU_1311     FALSE NA 7204.000 0.000 NA   NA
 11652569 10143910   PRU_1311     FALSE NA 7204.000 0.000 NA   NA
 11652576 10143910   PRU_1311     FALSE NA 7204.000 0.000 NA   NA
 11794961 10143910   PRU_1311     FALSE NA 7204.000 0.000 NA   NA
 11794968 10143910   PRU_1311     FALSE NA 7204.000 0.000 NA   NA
 11510214 10143910   PRU_1311     FALSE NA 7231.000 0.000 NA   NA
 11652577 10143910   PRU_1311     FALSE NA 7231.000 0.000 NA   NA
 11794969 10143910   PRU_1311     FALSE NA 7231.000 0.000 NA   NA
 11510207 10143910   PRU_1311     FALSE NA 7234.000 0.000 NA   NA
 11652570 10143910   PRU_1311     FALSE NA 7234.000 0.000 NA   NA
 11794962 10143910   PRU_1311     FALSE NA 7234.000 0.000 NA   NA
 11510208 10143910   PRU_1311     FALSE NA 7270.000 0.000 NA   NA
 11510215 10143910   PRU_1311     FALSE NA 7270.000 0.000 NA   NA
 11652571 10143910   PRU_1311     FALSE NA 7270.000 0.000 NA   NA
 11652578 10143910   PRU_1311     FALSE NA 7270.000 0.000 NA   NA
 11794963 10143910   PRU_1311     FALSE NA 7270.000 0.000 NA   NA
 11794970 10143910   PRU_1311     FALSE NA 7270.000 0.000 NA   NA
 11510216 10143910   PRU_1311     FALSE NA 7296.000 0.000 NA   NA
 11652579 10143910   PRU_1311     FALSE NA 7296.000 0.000 NA   NA
 11794971 10143910   PRU_1311     FALSE NA 7296.000 0.000 NA   NA
 11510209 10143910   PRU_1311     FALSE NA 7299.000 0.000 NA   NA
 11652572 10143910   PRU_1311     FALSE NA 7299.000 0.000 NA   NA
 11794964 10143910   PRU_1311     FALSE NA 7299.000 0.000 NA   NA
 11510210 10143910   PRU_1311     FALSE NA 7335.000 0.000 NA   NA
 11510217 10143910   PRU_1311     FALSE NA 7335.000 0.000 NA   NA
 11652573 10143910   PRU_1311     FALSE NA 7335.000 0.000 NA   NA
 11652580 10143910   PRU_1311     FALSE NA 7335.000 0.000 NA   NA
 11794965 10143910   PRU_1311     FALSE NA 7335.000 0.000 NA   NA
 11794972 10143910   PRU_1311     FALSE NA 7335.000 0.000 NA   NA
 11510218 10143910   PRU_1311     FALSE NA 7361.000 0.000 NA   NA
 11652581 10143910   PRU_1311     FALSE NA 7361.000 0.000 NA   NA
 11794973 10143910   PRU_1311     FALSE NA 7361.000 0.000 NA   NA
 11510211 10143910   PRU_1311     FALSE NA 7364.000 0.000 NA   NA
 11652574 10143910   PRU_1311     FALSE NA 7364.000 0.000 NA   NA
 11794966 10143910   PRU_1311     FALSE NA 7364.000 0.000 NA   NA
 10143919 10143920 PRU_1320 PRU_1321 cas2 csn1 TRUE 0.972 41.000 0.000 NA   0.948
 10143921 10143922 PRU_1322 PRU_1323     TRUE 0.945 50.000 0.000 NA   0.873
 10143925 10143926 PRU_1326 PRU_1327     TRUE 0.984 9.000 0.000 1.000   0.883
 10143926 10143927 PRU_1327 PRU_1328     TRUE 0.942 8.000 0.010 NA   0.652
 10143928 10143929 PRU_1330 PRU_1331     FALSE 0.588 11.000 0.000 0.099   0.291
 10143929 10143930 PRU_1331 PRU_1332     TRUE 0.783 0.000 0.000 0.099   0.531
 10143930 10143931 PRU_1332 PRU_1333     TRUE 0.950 -13.000 0.000 NA   0.788
 10143931 10143932 PRU_1333 PRU_1334     TRUE 0.890 -34.000 0.000 NA   0.694
 10143932 10143933 PRU_1334 PRU_1335     TRUE 0.984 -3.000 0.061 NA   0.811
 10143933 10143934 PRU_1335 PRU_1336     TRUE 0.893 -3.000 0.021 NA   0.609
 10143934 10143935 PRU_1336 PRU_1337     FALSE 0.416 55.000 0.021 NA   0.213
 10143936 10143937 PRU_1338 PRU_1339     TRUE 0.985 13.000 0.222 NA   0.646
 10143941 10143942 PRU_1343 PRU_1344 udk   TRUE 0.980 -3.000 0.010 NA N 0.893
 10143942 10143943 PRU_1344 PRU_1345     TRUE 0.984 0.000 0.012 NA   0.934
 10143944 10143945 PRU_1346 PRU_1347 rpmE   FALSE 0.612 35.000 0.000 1.000 N 0.486
 10143945 10143946 PRU_1347 PRU_1348   trxB FALSE 0.585 30.000 0.003 1.000 Y -0.078
 10143946 10143947 PRU_1348 PRU_1349 trxB   FALSE 0.002 337.000 0.000 1.000 N -0.224
 10143950 10143951 PRU_1352 PRU_1353     FALSE 0.119 179.000 0.000 NA   NA
 10143951 10143952 PRU_1353 PRU_1354     TRUE 0.963 2.000 0.172 NA   NA
 10143952 10143953 PRU_1354 PRU_1355     TRUE 0.994 4.000 0.144 1.000   0.866
 10143954 10143955 PRU_1356 PRU_1357 uvrB   FALSE 0.008 97.000 0.003 NA   0.110
 10143955 10143956 PRU_1357 PRU_1358     TRUE 0.978 6.000 0.000 NA   0.865
 10143956 10143957 PRU_1358 PRU_1359     FALSE 0.087 4.000 0.000 NA   0.166
 10143960 10143961 PRU_1362 PRU_1363   uxaC FALSE 0.003 217.000 0.000 1.000 N 0.019
 10143963 10143964 PRU_1365 PRU_1366 nrdG_1 nrdD_1 TRUE 0.982 -6.000 0.282 1.000   0.707
 10143968 10143969 PRU_1370 PRU_1371     FALSE 0.123 28.000 0.000 1.000   -0.039
 10143970 10143971 PRU_1372 PRU_1373   glnS TRUE 0.960 39.000 0.003 1.000   0.774
 10143971 10143972 PRU_1373 PRU_1374 glnS   TRUE 0.973 12.000 0.000 1.000   0.799
 10143972 10143973 PRU_1374 PRU_1375     TRUE 0.963 2.000 0.000 NA   0.824
 10143973 10143974 PRU_1375 PRU_1376     FALSE 0.280 81.000 0.000 NA   0.552
 10143974 10143975 PRU_1376 PRU_1377   gmd TRUE 0.991 12.000 0.000 1.000 Y 0.941
 10143975 10143976 PRU_1377 PRU_1378 gmd fcl TRUE 0.989 -10.000 0.000 0.008 Y 0.901
 10143978 10143979 PRU_1380 PRU_1381 phoB   TRUE 0.998 10.000 0.917 NA   0.857
 10143979 10143980 PRU_1381 PRU_1382     TRUE 0.994 17.000 0.333 NA   0.765
 10143980 10143981 PRU_1382 PRU_1383     TRUE 0.992 18.000 0.586 NA   0.681
 10143981 10143982 PRU_1383 PRU_1384     TRUE 0.976 0.000 0.483 NA   NA
 10143982 10143983 PRU_1384 PRU_1385     TRUE 0.959 -16.000 0.125 NA   NA
 10143983 10143984 PRU_1385 PRU_1386     TRUE 0.993 11.000 0.028 NA   0.899
 10143984 10143985 PRU_1386 PRU_1387     TRUE 0.990 15.000 0.000 NA Y 0.902
 10143985 10143986 PRU_1387 PRU_1388     TRUE 0.876 -3.000 0.000 NA   0.715
 10143986 10143987 PRU_1388 PRU_1389     TRUE 0.829 10.000 0.000 NA   0.577
 10143987 10143988 PRU_1389 PRU_1390     TRUE 0.801 28.000 0.000 NA   0.540
 10143989 10143990 PRU_1391 PRU_1392     TRUE 0.842 33.000 0.000 NA   NA
 10143990 10143991 PRU_1392 PRU_1393     FALSE 0.115 191.000 0.000 NA   NA
 10143991 10143992 PRU_1393 PRU_1394     TRUE 0.865 17.000 0.000 NA   0.612
 10143992 10143993 PRU_1394 PRU_1395     TRUE 0.965 13.000 0.000 NA   0.775
 10143993 10143994 PRU_1395 PRU_1396     FALSE 0.163 82.000 0.000 NA   0.465
 10143994 10143995 PRU_1396 PRU_1397     FALSE 0.318 115.000 0.000 NA   0.682
 10143995 10143996 PRU_1397 PRU_1398     TRUE 0.981 27.000 0.000 NA   0.845
 10143996 10143997 PRU_1398 PRU_1399     FALSE 0.298 115.000 0.000 NA   0.668
 10143997 10143998 PRU_1399 PRU_1400     FALSE 0.004 136.000 0.000 NA   0.090
 10143999 10144000 PRU_1401 PRU_1402     FALSE 0.257 95.000 0.000 NA   0.599
 10144002 10144003 PRU_1405 PRU_1406   nth FALSE 0.072 2.000 0.000 1.000 N 0.290
 10144004 10144005 PRU_1407 PRU_1408     TRUE 0.986 14.000 0.000 NA   0.921
 10144005 10144006 PRU_1408 PRU_1409     TRUE 0.638 32.000 0.000 NA   0.450
 10144006 10144007 PRU_1409 PRU_1410     TRUE 0.991 -30.000 0.119 NA   0.802
 10144007 10144008 PRU_1410 PRU_1411   rnz FALSE 0.109 339.000 0.004 NA   0.530
 10144008 10144009 PRU_1411 PRU_1412 rnz   TRUE 0.984 17.000 0.000 NA   0.954
 10144009 10144010 PRU_1412 PRU_1413     TRUE 0.985 17.000 0.000 NA   0.897
 10144012 10144013 PRU_1415 PRU_1416   glnA_1 TRUE 0.952 16.000 0.000 1.000   0.745
 10144013 10144014 PRU_1416 PRU_1417 glnA_1   TRUE 0.980 43.000 0.000 0.002   0.877
 10144014 10144015 PRU_1417 PRU_1418     TRUE 0.994 -3.000 0.364 NA   0.819
 10144016 10144017 PRU_1419 PRU_1420     TRUE 0.756 -3.000 0.000 NA   NA
 10144017 10144018 PRU_1420 PRU_1421     FALSE 0.113 198.000 0.000 NA   NA
 10144021 10144022 PRU_1424 PRU_1425     FALSE 0.277 -3.000 0.000 NA Y 0.127
 10144023 10144024 PRU_1426 PRU_1427     TRUE 0.929 29.000 0.000 NA   0.701
 10144025 10144026 PRU_1428 PRU_1429     TRUE 0.889 48.000 0.000 NA   0.765
 10144026 10144027 PRU_1429 PRU_1430     TRUE 0.973 -16.000 0.000 NA   0.875
 10144027 10144028 PRU_1430 PRU_1431     FALSE 0.600 54.000 0.000 NA   0.605
 10144028 10144029 PRU_1431 PRU_1432     TRUE 0.880 3.000 0.000 NA   0.687
 10144029 10144030 PRU_1432 PRU_1433     TRUE 0.979 2.000 0.000 NA Y 0.854
 10144031 10144032 PRU_1434 PRU_1435     TRUE 0.977 -25.000 0.000 1.000   0.896
 10144032 10144033 PRU_1435 PRU_1436     TRUE 0.954 -3.000 0.026 1.000   0.734
 10144034 10144035 PRU_1437 PRU_1438     TRUE 0.925 66.000 0.375 NA   0.630
 10144035 10144036 PRU_1438 PRU_1439   aspS FALSE 0.125 169.000 0.002 NA   0.537
 10144039 10144040 PRU_1442 PRU_1443     TRUE 0.883 6.000 0.004 1.000 N NA
 10144040 10144041 PRU_1443 PRU_1444     TRUE 0.864 106.000 0.064 NA   0.815
 10144041 10144042 PRU_1444 PRU_1445     TRUE 0.977 3.000 0.000 NA   0.933
 10144042 10144043 PRU_1445 PRU_1446     FALSE 0.080 -24.000 0.000 NA   0.003
 10144044 10144045 PRU_1447 PRU_1448   nhaC TRUE 0.784 -3.000 0.000 NA   0.625
 10144045 10144046 PRU_1448 PRU_1449 nhaC   TRUE 0.951 1.000 0.000 1.000 N 0.804
 10144046 10144047 PRU_1449 PRU_1450     TRUE 0.983 11.000 0.067 NA   0.735
 10144047 10144048 PRU_1450 PRU_1451     TRUE 0.981 19.000 0.353 NA   0.543
 10144049 10144050 PRU_1452 PRU_1453   uvrA_1 TRUE 0.899 -16.000 0.000 NA   0.720
 10144050 10144051 PRU_1453 PRU_1454 uvrA_1 trpB FALSE 0.026 368.000 0.000 1.000 N 0.455
 10144051 10144052 PRU_1454 PRU_1455 trpB trpE TRUE 0.997 17.000 0.107 1.000 Y 0.851
 10144052 10144053 PRU_1455 PRU_1456 trpE trpG TRUE 0.999 37.000 0.520 0.001 Y 0.975
 10144053 10144054 PRU_1456 PRU_1457 trpG trpD TRUE 0.990 47.000 0.058 1.000 Y 0.969
 10144054 10144055 PRU_1457 PRU_1458 trpD trpC TRUE 0.988 63.000 0.216 1.000 Y 0.984
 10144055 10144056 PRU_1458 PRU_1459 trpC trpF TRUE 0.972 -3.000 0.000 NA   0.926
 10144056 10144057 PRU_1459 PRU_1460 trpF trpA TRUE 0.986 29.000 0.000 NA   0.904
 10144057 10144058 PRU_1460 PRU_1461 trpA   FALSE 0.006 108.000 0.000 1.000 N -0.746
 10144058 10144059 PRU_1461 PRU_1462     FALSE 0.098 206.000 0.000 1.000 N NA
 10144059 10144060 PRU_1462 PRU_1463     TRUE 0.986 40.000 1.000 NA   NA
 10144061 10144062 PRU_1464 PRU_1465   rhaD TRUE 0.963 0.000 0.000 1.000   0.836
 10144062 10144063 PRU_1465 PRU_1466 rhaD   TRUE 0.991 26.000 0.000 1.000 Y 0.934
 10144063 10144064 PRU_1466 PRU_1467   rhaA TRUE 0.988 5.000 0.000 1.000 Y 0.916
 10144064 10144065 PRU_1467 PRU_1468 rhaA rhaB TRUE 0.982 7.000 0.067 1.000 Y 0.664
 10144065 10144066 PRU_1468 PRU_1469 rhaB   TRUE 0.959 -7.000 0.000 0.046   0.780
 10144066 10144067 PRU_1469 PRU_1470     FALSE 0.235 228.000 0.000 0.046   0.663
 10144067 10144068 PRU_1470 PRU_1471     FALSE 0.072 2.000 0.000 NA   0.296
 10144068 10144069 PRU_1471 PRU_1472     TRUE 0.785 15.000 0.014 NA   0.331
 10144069 10144070 PRU_1472 PRU_1473     TRUE 0.977 29.000 0.000 1.000 N 0.824
 10144070 10144071 PRU_1473 PRU_1474     FALSE 0.095 187.000 0.000 0.035   0.451
 10144072 10144073 PRU_1476 PRU_1477     TRUE 0.985 10.000 0.000 NA   0.941
 10144073 10144074 PRU_1477 PRU_1478     TRUE 0.934 56.000 0.000 NA   0.965
 10144074 10144075 PRU_1478 PRU_1479     TRUE 0.979 5.000 0.000 NA   0.964
 10144075 10144076 PRU_1479 PRU_1480     TRUE 0.766 97.000 0.000 NA   0.976
 10144077 10144078 PRU_1481 PRU_1482     FALSE 0.002 510.000 0.000 NA   -0.100
 10144078 10144079 PRU_1482 PRU_1483     FALSE 0.033 127.000 0.000 NA   0.396
 10144079 10144080 PRU_1483 PRU_1484     FALSE 0.199 167.000 0.000 NA   0.674
 10144080 10144081 PRU_1484 PRU_1485     TRUE 0.986 27.000 0.000 NA   0.934
 10144081 10144082 PRU_1485 PRU_1486     TRUE 0.986 30.000 0.000 NA   0.934
 10144082 10144083 PRU_1486 PRU_1487     TRUE 0.980 36.000 0.000 NA   0.941
 10144083 10144084 PRU_1487 PRU_1488     FALSE 0.545 251.000 0.000 NA   0.955
 10144084 10144085 PRU_1488 PRU_1489     TRUE 0.812 93.000 0.000 NA   0.927
 10144085 10144086 PRU_1489 PRU_1490     FALSE 0.088 264.000 0.000 NA   0.585
 10144086 10144087 PRU_1490 PRU_1491     TRUE 0.972 14.000 0.000 NA   0.796
 10144087 10144088 PRU_1491 PRU_1492     FALSE 0.022 179.000 0.000 NA   0.393
 10144088 10144089 PRU_1492 PRU_1493     FALSE 0.004 149.000 0.000 NA   -0.173
 10144091 10144092 PRU_1495 PRU_1496     TRUE 0.981 -3.000 0.230 NA   0.728
 10144092 10144093 PRU_1496 PRU_1497     FALSE 0.572 76.000 0.000 1.000   0.698
 10144093 10144094 PRU_1497 PRU_1498     TRUE 0.950 22.000 0.000 NA   0.739
 10144096 10144097 PRU_1500 PRU_1501     FALSE 0.077 3.000 0.000 NA   0.229
 10144100 10144101 PRU_1504 PRU_1505     FALSE 0.612 156.000 0.000 NA   0.957
 10144101 10144102 PRU_1505 PRU_1506     TRUE 0.983 33.000 0.000 NA   0.938
 10144102 10144103 PRU_1506 PRU_1507     TRUE 0.979 33.000 0.000 NA   0.856
 10144103 10144104 PRU_1507 PRU_1508     FALSE 0.073 287.000 0.000 NA   0.554
 10144104 10144105 PRU_1508 PRU_1509     TRUE 0.972 -3.000 0.000 NA   0.910
 10144105 10144106 PRU_1509 PRU_1510     FALSE 0.003 160.000 0.000 NA N 0.256
 10144106 10144107 PRU_1510 PRU_1511     TRUE 0.975 22.000 0.000 NA   0.802
 10144109 10144110 PRU_1513 PRU_1514 rumA   FALSE 0.137 117.000 0.018 1.000   0.313
 10144112 10144113 PRU_1516 PRU_1517     TRUE 0.949 -3.000 0.250 NA Y 0.337
 10144114 10144115 PRU_1518 PRU_1519   rpsP FALSE 0.116 10.000 0.000 1.000 N 0.166
 10144117 10144118 PRU_1522 PRU_1523     FALSE 0.005 123.000 0.000 1.000   -0.193
 10144118 10144119 PRU_1523 PRU_1524     FALSE 0.003 177.000 0.000 1.000   -0.334
 10144119 10144120 PRU_1524 PRU_1525     TRUE 0.986 -3.000 0.000 0.021 Y 0.870
 10144120 10144121 PRU_1525 PRU_1526     TRUE 0.973 -3.000 0.000 1.000   0.917
 10144121 10144122 PRU_1526 PRU_1527   glf TRUE 0.967 24.000 0.000 1.000   0.775
 10144122 10144123 PRU_1527 PRU_1528 glf   TRUE 0.940 11.000 0.000 1.000 N 0.738
 10144123 10144124 PRU_1528 PRU_1529     TRUE 0.972 0.000 0.000 NA   0.897
 10144124 10144125 PRU_1529 PRU_1530     TRUE 0.975 2.000 0.000 NA   0.920
 10144125 10144126 PRU_1530 PRU_1531     TRUE 0.982 8.000 0.000 NA   0.968
 10144126 10144127 PRU_1531 PRU_1532     TRUE 0.994 42.000 0.167 NA   0.915
 10144127 10144128 PRU_1532 PRU_1533     TRUE 0.850 8.000 0.000 NA   NA
 10144128 10144129 PRU_1533 PRU_1534     TRUE 0.813 4.000 0.000 NA   NA
 10144129 10144130 PRU_1534 PRU_1535     TRUE 0.858 17.000 0.000 NA   NA
 10144130 10144131 PRU_1535 PRU_1536     TRUE 0.951 49.000 0.000 NA   0.886
 10144131 10144132 PRU_1536 PRU_1537     TRUE 0.968 -13.000 0.088 1.000 N 0.707
 10144132 10144133 PRU_1537 PRU_1538     TRUE 0.989 2.000 0.182 1.000   0.780
 10144133 10144134 PRU_1538 PRU_1539     TRUE 0.853 61.000 0.000 NA   0.783
 10144134 10144135 PRU_1539 PRU_1540     TRUE 0.967 -3.000 0.000 NA   0.872
 10144135 10144136 PRU_1540 PRU_1542     FALSE 0.563 2082.000 0.000 NA   0.910
 10144136 10144137 PRU_1542 PRU_1543     TRUE 0.982 -13.000 0.000 1.000 Y 0.873
 10144137 10144138 PRU_1543 PRU_1544     TRUE 0.971 0.000 0.000 1.000 N 0.940
 10144138 10144139 PRU_1544 PRU_1545     FALSE 0.151 704.000 0.000 1.000   0.662
 10144141 10144142 PRU_1547 PRU_1548     TRUE 0.972 57.000 0.676 NA   0.694
 10144142 10144143 PRU_1548 PRU_1549   ksgA FALSE 0.006 252.000 0.000 NA N 0.378
 10144144 10144145 PRU_1550 PRU_1551   pepD_2 TRUE 0.960 4.000 0.099 NA   NA
 10144145 10144146 PRU_1551 PRU_1552 pepD_2   FALSE 0.002 275.000 0.000 1.000 N 0.304
 10144146 10144147 PRU_1552 PRU_1553     FALSE 0.562 118.000 0.020 NA   0.726
 10144147 10144148 PRU_1553 PRU_1554     TRUE 0.857 7.000 0.000 NA   0.621
 10144149 10144150 PRU_1555 PRU_1556   secG FALSE 0.129 160.000 0.000 NA   NA
 10144150 10144151 PRU_1556 PRU_1557 secG   TRUE 0.912 5.000 0.069 NA   0.413
 10144151 10144152 PRU_1557 PRU_1558     TRUE 0.875 60.000 0.641 NA   0.292
 10144152 10144153 PRU_1558 PRU_1559     TRUE 0.971 -16.000 0.019 NA   0.772
 10144153 10144154 PRU_1559 PRU_1560     FALSE 0.502 65.000 0.000 NA   NA
 10144154 10144155 PRU_1560 PRU_1561     TRUE 0.945 22.000 0.022 NA   NA
 10144155 10144156 PRU_1561 PRU_1562   rlmN TRUE 0.986 18.000 0.002 1.000   0.848
 10144157 10144158 PRU_1563 PRU_1564     TRUE 0.975 31.000 0.455 NA   0.424
 10144159 10144160 PRU_1565 PRU_1566 cysE   FALSE 0.007 105.000 0.000 1.000 N 0.006
 10144162 10144163 PRU_1568 PRU_1569     FALSE 0.009 88.000 0.000 NA   -0.020
 10144163 10144164 PRU_1569 PRU_1570     TRUE 0.977 38.000 0.400 NA   NA
 10144164 10144165 PRU_1570 PRU_1571     FALSE 0.137 151.000 0.000 NA   NA
 10144167 10144168 PRU_1573 PRU_1574     FALSE 0.131 692.000 0.000 1.000   0.639
 10144168 10144169 PRU_1574 PRU_1575     FALSE 0.174 629.000 0.000 NA   0.688
 10144169 10144170 PRU_1575 PRU_1576     FALSE 0.340 120.000 0.000 NA   0.714
 10144170 10144171 PRU_1576 PRU_1577     FALSE 0.010 87.000 0.000 NA   0.307
 10144171 10144172 PRU_1577 PRU_1578     FALSE 0.118 121.000 0.000 NA   0.535
 10144172 10144173 PRU_1578 PRU_1579     TRUE 0.937 1.000 0.000 0.003   0.719
 10144173 10144174 PRU_1579 PRU_1580     TRUE 0.744 94.000 0.000 NA   0.835
 10144174 10144175 PRU_1580 PRU_1581     TRUE 0.996 35.000 0.200 NA   0.925
 10144175 10144176 PRU_1581 PRU_1583     FALSE 0.517 870.000 0.000 NA   0.970
 10144176 10144177 PRU_1583 PRU_1584     TRUE 0.753 98.000 0.000 NA   0.984
 10144177 10144178 PRU_1584 PRU_1585     TRUE 0.871 53.000 0.000 NA   0.772
 10144178 10144179 PRU_1585 PRU_1586     TRUE 0.968 43.000 0.000 NA   0.901
 10144180 10144181 PRU_1587 PRU_1589     FALSE 0.002 436.000 0.000 NA   -0.031
 10144182 10144183 PRU_1590 PRU_1591     TRUE 0.985 40.000 0.571 NA   0.662
 10144183 10144184 PRU_1591 PRU_1592     FALSE 0.536 185.000 0.000 1.000 N 0.873
 10144185 10144186 PRU_1593 PRU_1594     TRUE 0.984 8.000 0.000 NA   0.952
 10144186 10144187 PRU_1594 PRU_1595     TRUE 0.974 0.000 0.000 NA   0.916
 10144187 10144188 PRU_1595 PRU_1596     FALSE 0.118 194.000 0.000 1.000   NA
 10144188 10144189 PRU_1596 PRU_1597     TRUE 0.989 20.000 0.556 NA   NA
 10144189 10144190 PRU_1597 PRU_1598     TRUE 0.997 31.000 0.222 NA   0.959
 10144191 10144192 PRU_1599 PRU_1600     TRUE 0.868 79.000 0.000 NA   0.939
 10144192 10144193 PRU_1600 PRU_1601     TRUE 0.833 57.000 0.000 NA   0.757
 10144197 10144198 PRU_1605 PRU_1606     FALSE 0.004 134.000 0.000 NA N 0.228
 10144198 10144199 PRU_1606 PRU_1607   mfd FALSE 0.005 123.000 0.000 NA N 0.141
 10144199 10144200 PRU_1607 PRU_1608 mfd   FALSE 0.002 317.000 0.000 1.000   -0.342
 10144201 10144202 PRU_1610 PRU_1611     TRUE 0.984 20.000 0.007 NA   0.802
 10144202 10144203 PRU_1611 PRU_1612     TRUE 0.846 -3.000 0.049 1.000   0.399
 10144204 10144205 PRU_1613 PRU_1614   pyrC TRUE 0.896 -3.000 0.028 1.000   0.586
 10144205 10144206 PRU_1614 PRU_1615 pyrC   TRUE 0.903 -34.000 0.013 NA   0.608
 10144206 10144207 PRU_1615 PRU_1616     TRUE 0.731 91.000 0.150 NA   NA
 10144207 10144208 PRU_1616 PRU_1617     TRUE 0.966 -16.000 0.177 NA   NA
 10144210 10144211 PRU_1619 PRU_1620   xylE TRUE 0.982 12.000 0.000 1.000   0.864
 10144211 10144212 PRU_1620 PRU_1621 xylE   TRUE 0.842 3.000 0.000 1.000   0.642
 10144213 10144214 PRU_1622 PRU_1623     FALSE 0.003 249.000 0.000 NA   -0.182
 10144216 10144217 PRU_1625 PRU_1626   kdsA_2 FALSE 0.295 106.000 0.005 1.000 Y 0.399
 10144217 10144218 PRU_1626 PRU_1627 kdsA_2   TRUE 0.876 10.000 0.023 1.000 Y 0.186
 10144218 10144219 PRU_1627 PRU_1628     FALSE 0.124 23.000 0.000 1.000 N 0.256
 10144219 10144220 PRU_1628 PRU_1629     TRUE 0.840 -3.000 0.000 0.037 N 0.617
 10144220 10144221 PRU_1629 PRU_1630     TRUE 0.943 7.000 0.000 1.000 N 0.751
 10144222 10144223 PRU_1631 PRU_1632     TRUE 0.936 4.000 0.105 NA   0.461
 10144224 10144225 PRU_1633 PRU_1634 radA pgk FALSE 0.071 160.000 0.000 1.000 N 0.537
 10144225 10144226 PRU_1634 PRU_1635 pgk   FALSE 0.003 172.000 0.000 1.000   0.111
 10144226 10144227 PRU_1635 PRU_1636     FALSE 0.023 149.000 0.000 1.000   0.378
 10144228 10144229 PRU_1638 PRU_1639   mutB FALSE 0.077 3.000 0.000 1.000 N 0.266
 10144229 10144230 PRU_1639 PRU_1640 mutB mutA TRUE 0.998 20.000 0.115 0.001 Y 0.826
 10144231 10144232 PRU_1641 PRU_1642     TRUE 0.910 41.000 0.000 1.000   0.743
 10144232 10144233 PRU_1642 PRU_1643     TRUE 0.997 6.000 0.256 1.000   0.956
 10144233 10144234 PRU_1643 PRU_1644     TRUE 0.965 72.000 0.222 1.000 N 0.813
 10144234 10144235 PRU_1644 PRU_1645     TRUE 0.922 -3.000 0.000 1.000 N 0.769
 10144235 10144236 PRU_1645 PRU_1646     FALSE 0.032 113.000 0.000 1.000 N 0.401
 10144236 10144237 PRU_1646 PRU_1647   uvrA_2 FALSE 0.104 7.000 0.000 1.000 N 0.272
 10144237 10144238 PRU_1647 PRU_1648 uvrA_2   FALSE 0.117 17.000 0.000 NA   0.134
 10144238 10144239 PRU_1648 PRU_1649     TRUE 0.899 -6.000 0.011 NA   0.645
 10144239 10144240 PRU_1649 PRU_1650     TRUE 0.991 29.000 0.173 0.055   0.706
 10144242 10144243 PRU_1652 PRU_1653   gidB TRUE 0.936 -3.000 0.005 NA   0.740
 10144243 10144244 PRU_1653 PRU_1654 gidB   TRUE 0.983 0.000 0.024 1.000   0.843
 10144247 10144248 PRU_1657 PRU_1658 xth   TRUE 0.892 -43.000 0.000 NA   0.696
 10144248 10144249 PRU_1658 PRU_1659     FALSE 0.591 88.000 0.000 NA   0.749
 10144249 10144250 PRU_1659 PRU_1660     TRUE 0.993 40.000 0.243 0.037 N 0.787
 10144250 10144251 PRU_1660 PRU_1661     TRUE 0.995 13.000 0.102 1.000 N 0.862
 10144251 10144252 PRU_1661 PRU_1662     FALSE 0.003 183.000 0.000 1.000 N 0.117
 10144252 10144253 PRU_1662 PRU_1663   miaA_2 FALSE 0.341 52.000 0.013 1.000 N 0.246
 10144253 10144254 PRU_1663 PRU_1664 miaA_2   TRUE 0.788 5.000 0.000 0.088   0.462
 10144254 10144255 PRU_1664 PRU_1665     TRUE 0.685 4.000 0.000 NA   0.509
 10144255 10144256 PRU_1665 PRU_1666     FALSE 0.572 46.000 0.000 NA   0.528
 10144256 10144257 PRU_1666 PRU_1667     FALSE 0.051 280.000 0.000 NA   0.504
 10144258 10144259 PRU_1668 PRU_1669     TRUE 0.979 23.000 0.000 NA   0.819
 10144259 10144260 PRU_1669 PRU_1670     FALSE 0.017 569.000 0.000 NA   0.390
 10144260 10144261 PRU_1670 PRU_1671     TRUE 0.958 25.000 0.000 NA   0.756
 10144261 10144262 PRU_1671 PRU_1672     FALSE 0.003 172.000 0.000 NA   0.166
 10144263 10144264 PRU_1673 PRU_1674   gap FALSE 0.045 47.000 0.000 1.000   -0.213
 10144266 10144267 PRU_1676 PRU_1677     TRUE 0.998 14.000 0.400 NA   0.910
 10144267 10144268 PRU_1677 PRU_1678   guaA FALSE 0.002 260.000 0.000 1.000   -0.591
 10144268 10144269 PRU_1678 PRU_1679 guaA   TRUE 0.962 25.000 0.004 1.000 N 0.739
 10144269 10144270 PRU_1679 PRU_1680     FALSE 0.104 95.000 0.000 1.000   0.445
 10144272 10144273 PRU_1682 PRU_1683   menC TRUE 0.940 -12.000 0.283 1.000 N 0.413
 10144273 10144274 PRU_1683 PRU_1684 menC menB FALSE 0.607 106.000 0.171 0.002 N 0.359
 10144274 10144275 PRU_1684 PRU_1685 menB menD TRUE 0.950 -31.000 0.147 0.002 Y 0.020
 10144275 10144276 PRU_1685 PRU_1686 menD menF TRUE 0.997 -13.000 0.281 1.000 Y 0.890
 10144276 10144277 PRU_1686 PRU_1687 menF   TRUE 0.976 0.000 0.043 NA Y 0.732
 10144277 10144278 PRU_1687 PRU_1688     FALSE 0.301 41.000 0.000 NA N 0.416
 10144278 10144279 PRU_1688 PRU_1689     TRUE 0.974 18.000 0.048 NA Y 0.604
 10144279 10144280 PRU_1689 PRU_1690     TRUE 0.996 13.000 0.048 NA Y 0.865
 10144281 10144282 PRU_1691 PRU_1692 lysS   TRUE 0.993 29.000 0.034 1.000 N 0.958
 10144282 10144283 PRU_1692 PRU_1693     TRUE 0.881 30.000 0.000 NA   0.626
 10144284 10144285 PRU_1694 PRU_1695     TRUE 0.924 17.000 0.000 1.000   0.689
 10144285 10144286 PRU_1695 PRU_1696     FALSE 0.513 -16.000 0.000 1.000 N 0.464
 10144286 10144287 PRU_1696 PRU_1697     TRUE 0.826 1.000 0.000 1.000 N 0.660
 10144290 10144291 PRU_1700 PRU_1701 metF   TRUE 0.991 7.000 0.026 1.000 N 0.899
 10144291 10144292 PRU_1701 PRU_1702     TRUE 0.998 27.000 0.372 NA   0.868
 10144292 10144293 PRU_1702 PRU_1703     TRUE 0.935 23.000 0.011 NA   0.614
 10144294 10144295 PRU_1704 PRU_1705     TRUE 0.987 -19.000 0.161 1.000   0.760
 10144295 10144296 PRU_1705 PRU_1706     TRUE 0.963 -3.000 0.220 1.000   NA
 10144296 10144297 PRU_1706 PRU_1707   mreC TRUE 0.979 5.000 0.104 0.003   NA
 10144297 10144298 PRU_1707 PRU_1708 mreC mreB TRUE 0.999 22.000 0.689 1.000 N 0.925
 10144298 10144299 PRU_1708 PRU_1709 mreB   TRUE 0.991 39.000 0.059 1.000   0.873
 10144299 10144300 PRU_1709 PRU_1710     FALSE 0.516 124.000 0.000 NA   0.788
 10144300 10144301 PRU_1710 PRU_1711   asnA TRUE 0.984 24.000 0.000 NA   0.972
 10144301 10144302 PRU_1711 PRU_1712 asnA   FALSE 0.122 498.000 0.000 1.000 N 0.650
 10144302 10144303 PRU_1712 PRU_1713     TRUE 0.997 20.000 0.456 0.001 Y 0.699
 10144303 10144304 PRU_1713 PRU_1714     TRUE 0.998 5.000 0.151 0.001 Y 0.978
 10144304 10144305 PRU_1714 PRU_1715     TRUE 0.998 38.000 0.253 0.004 Y 0.818
 10144305 10144306 PRU_1715 PRU_1716     TRUE 0.998 -3.000 0.506 0.002 Y 0.975
 10144306 10144307 PRU_1716 PRU_1717     TRUE 0.999 7.000 0.223 0.004 Y 0.977
 10144307 10144308 PRU_1717 PRU_1718     TRUE 0.999 10.000 0.166 0.004 Y 0.972
 10144308 10144309 PRU_1718 PRU_1719     TRUE 0.998 40.000 0.157 0.004 Y 0.957
 10144309 10144310 PRU_1719 PRU_1720     TRUE 0.998 -3.000 0.250 0.002 Y 0.899
 10144310 10144311 PRU_1720 PRU_1721     TRUE 0.999 -9.000 0.428 0.002 Y 0.916
 10144311 10144312 PRU_1721 PRU_1722     FALSE 0.583 55.000 0.000 1.000   0.595
 10144312 10144313 PRU_1722 PRU_1723     FALSE 0.027 59.000 0.000 1.000   -0.082
 10144313 10144314 PRU_1723 PRU_1724     TRUE 0.993 -3.000 0.046 1.000 Y 0.941
 10144314 10144315 PRU_1724 PRU_1725     TRUE 0.998 33.000 0.385 NA Y 0.975
 10144315 10144316 PRU_1725 PRU_1726     TRUE 0.996 22.000 0.154 NA N 0.877
 10144316 10144317 PRU_1726 PRU_1727   sodB FALSE 0.009 607.000 0.000 1.000 N 0.388
 10144317 10144318 PRU_1727 PRU_1728 sodB   FALSE 0.003 161.000 0.000 1.000   0.253
 10144318 10144319 PRU_1728 PRU_1729     FALSE 0.083 37.000 0.000 NA   0.249
 10144319 10144320 PRU_1729 PRU_1731     FALSE 0.002 816.000 0.000 NA   -0.038
 10144320 10144321 PRU_1731 PRU_1732     FALSE 0.341 437.000 0.000 NA   0.780
 10144321 10144322 PRU_1732 PRU_1733     FALSE 0.223 483.000 0.000 NA   0.732
 10144322 10144323 PRU_1733 PRU_1734     TRUE 0.997 -7.000 0.600 NA   0.869
 10144323 10144324 PRU_1734 PRU_1735     FALSE 0.011 321.000 0.000 NA   0.364
 10144324 10144325 PRU_1735 PRU_1736     TRUE 0.975 2.000 0.000 NA   0.909
 10144326 10144327 PRU_1737 PRU_1739     FALSE 0.155 250.000 0.000 1.000   0.660
 10144327 10144328 PRU_1739 PRU_1740     FALSE 0.007 101.000 0.000 1.000   -0.229
 10144330 10144331 PRU_1742 PRU_1744     FALSE 0.024 1742.000 0.000 NA   0.410
 10144332 10144333 PRU_1745 PRU_1746     TRUE 0.972 2.000 0.000 NA   0.880
 10144333 10144334 PRU_1746 PRU_1747     TRUE 0.986 21.000 0.000 NA   0.921
 10144334 10144335 PRU_1747 PRU_1748     TRUE 0.972 1.000 0.000 1.000   0.881
 10144335 10144336 PRU_1748 PRU_1749     FALSE 0.447 216.000 0.000 1.000   0.810
 10144336 10144337 PRU_1749 PRU_1750     TRUE 0.999 17.000 0.615 1.000 Y 0.910
 10144337 10144338 PRU_1750 PRU_1751     FALSE 0.002 644.000 0.000 NA   0.252
 10144338 10144339 PRU_1751 PRU_1752     FALSE 0.489 634.000 0.000 NA   0.858
 10144339 10144340 PRU_1752 PRU_1753     TRUE 0.985 -7.000 0.032 NA   0.852
 10144340 10144341 PRU_1753 PRU_1754     TRUE 0.979 -7.000 0.133 NA   0.738
 10144341 10144342 PRU_1754 PRU_1755     FALSE 0.043 211.000 0.000 NA   0.464
 10144342 10144343 PRU_1755 PRU_1756     TRUE 0.968 -3.000 0.125 1.000 Y 0.602
 10144343 10144344 PRU_1756 PRU_1757     TRUE 0.993 8.000 0.000 0.020 Y 0.953
 10144344 10144345 PRU_1757 PRU_1758     TRUE 0.869 93.000 0.000 NA Y 0.934
 10144345 10144346 PRU_1758 PRU_1759     TRUE 0.975 -12.000 0.000 NA   0.929
 10144346 10144347 PRU_1759 PRU_1760     TRUE 0.986 26.000 0.000 NA   0.944
 10144347 10144348 PRU_1760 PRU_1761     TRUE 0.975 39.000 0.000 NA   0.945
 10144348 10144349 PRU_1761 PRU_1762     TRUE 0.926 144.000 0.375 NA   0.950
 10144349 10144350 PRU_1762 PRU_1763     TRUE 0.980 4.000 0.000 NA   0.909
 10144350 10144351 PRU_1763 PRU_1764     TRUE 0.982 7.000 0.000 NA   0.893
 10144351 10144352 PRU_1764 PRU_1765     FALSE 0.115 204.000 0.000 1.000   NA
 10144352 10144353 PRU_1765 PRU_1766     TRUE 0.855 2.000 0.000 0.092   NA
 10144353 10144354 PRU_1766 PRU_1767     TRUE 0.684 9.000 0.000 1.000   0.460
 10144354 10144355 PRU_1767 PRU_1768     FALSE 0.024 413.000 0.000 NA   0.419
 10144355 10144356 PRU_1768 PRU_1769     TRUE 0.766 89.000 0.000 NA   0.834
 10144356 10144357 PRU_1769 PRU_1770     TRUE 0.893 73.000 0.000 1.000 Y 0.817
 10144357 10144358 PRU_1770 PRU_1772     FALSE 0.564 1118.000 0.000 1.000   0.928
 10144359 10144360 PRU_1773 PRU_1774     TRUE 0.986 14.000 0.000 NA   0.921
 10144360 10144361 PRU_1774 PRU_1775     TRUE 0.760 106.000 0.000 NA   0.952
 10144361 10144362 PRU_1775 PRU_1776     TRUE 0.920 63.000 0.000 NA   0.949
 10144362 10144363 PRU_1776 PRU_1777     TRUE 0.810 113.000 0.000 0.054   0.926
 10144363 10144364 PRU_1777 PRU_1778     FALSE 0.586 193.000 0.000 1.000   0.897
 10144365 10144366 PRU_1779 PRU_1780     TRUE 0.973 38.000 0.000 NA   0.976
 10144366 10144367 PRU_1780 PRU_1781     TRUE 0.872 74.000 0.000 NA   0.971
 10144367 10144368 PRU_1781 PRU_1782     TRUE 0.976 35.000 0.000 NA   0.855
 10144368 10144369 PRU_1782 PRU_1783     TRUE 0.760 47.000 0.000 NA   0.651
 10144370 10144371 PRU_1784 PRU_1785   pgi FALSE 0.269 50.000 0.000 1.000   0.399
 10144371 10144372 PRU_1785 PRU_1786 pgi   FALSE 0.513 82.000 0.027 1.000   0.511
 10144372 10144373 PRU_1786 PRU_1787     FALSE 0.002 415.000 0.000 1.000   -0.033
 10144374 10144375 PRU_1790 PRU_1791     TRUE 0.997 -10.000 0.800 NA   0.960
 10144375 10144376 PRU_1791 PRU_1792     TRUE 0.858 0.000 0.154 NA   0.161
 10144378 10144379 PRU_1794 PRU_1795     FALSE 0.005 121.000 0.000 1.000 N 0.012
 10144379 10144380 PRU_1795 PRU_1796     TRUE 0.776 56.000 0.219 1.000 N 0.245
 10144380 10144381 PRU_1796 PRU_1797     TRUE 0.981 23.000 0.250 1.000 N 0.604
 10144381 10144382 PRU_1797 PRU_1798     FALSE 0.028 239.000 0.000 1.000   0.418
 10144382 10144383 PRU_1798 PRU_1799     TRUE 0.962 -16.000 0.000 1.000   0.810
 10144383 10144384 PRU_1799 PRU_1800     TRUE 0.966 40.000 0.000 1.000   0.849
 10144384 10144385 PRU_1800 PRU_1801     TRUE 0.987 24.000 0.000 1.000   0.916
 10144385 10144386 PRU_1801 PRU_1802     TRUE 0.822 196.000 0.069 1.000   0.934
 10144386 10144387 PRU_1802 PRU_1803     FALSE 0.013 122.000 0.000 NA   0.341
 10144387 10144388 PRU_1803 PRU_1804     FALSE 0.007 98.000 0.000 NA   -0.006
 10144389 10144390 PRU_1805 PRU_1806     TRUE 0.993 23.000 0.035 1.000 N 0.969
 10144390 10144391 PRU_1806 PRU_1807   purD TRUE 0.983 37.000 0.017 1.000 N 0.847
 10144391 10144392 PRU_1807 PRU_1808 purD   TRUE 0.941 21.000 0.019 NA   NA
 10144392 10144393 PRU_1808 PRU_1809     TRUE 0.950 -24.000 0.078 NA   NA
 10144393 10144394 PRU_1809 PRU_1810     FALSE 0.253 99.000 0.000 NA   NA
 10144394 10144395 PRU_1810 PRU_1811     TRUE 0.975 4.000 0.230 1.000   NA
 10144395 10144396 PRU_1811 PRU_1812     FALSE 0.056 84.000 0.000 0.043 Y -0.462
 10144398 10144399 PRU_1814 PRU_1815     TRUE 0.979 -63.000 0.000 NA   0.916
 10144399 10144400 PRU_1815 PRU_1816     TRUE 0.977 3.000 0.000 NA   0.903
 10144400 10144401 PRU_1816 PRU_1817     FALSE 0.002 317.000 0.000 NA   0.035
 10144402 10144403 PRU_1818 PRU_1819     TRUE 0.703 9.000 0.047 1.000 N -0.036
 10144403 10144404 PRU_1819 PRU_1820     TRUE 0.997 -3.000 0.422 0.037 Y 0.818
 10144404 10144405 PRU_1820 PRU_1821     TRUE 0.965 -39.000 0.148 NA   NA
 10144405 10144406 PRU_1821 PRU_1822     TRUE 0.791 69.000 0.059 NA   NA
 10144406 10144407 PRU_1822 PRU_1823     TRUE 0.860 18.000 0.000 NA   NA
 10144407 10144408 PRU_1823 PRU_1824     TRUE 0.832 6.000 0.000 NA   NA
 10144408 10144409 PRU_1824 PRU_1825   idsA TRUE 0.932 0.000 0.017 NA N 0.711
 10144409 10144410 PRU_1825 PRU_1826 idsA   TRUE 0.673 6.000 0.000 1.000   0.476
 10144411 10144412 PRU_1827 PRU_1828   cmk TRUE 0.714 -3.000 0.021 NA   0.340
 10144412 10144413 PRU_1828 PRU_1829 cmk   FALSE 0.052 204.000 0.000 1.000   0.485
 10144414 10144415 PRU_1830 PRU_1831 folK queA TRUE 0.941 18.000 0.023 1.000 N 0.614
 10144415 10144416 PRU_1831 PRU_1832 queA truB TRUE 0.995 18.000 0.033 1.000 Y 0.876
 10144416 10144417 PRU_1832 PRU_1833 truB   TRUE 0.991 -3.000 0.082 1.000 N 0.944
 10144417 10144418 PRU_1833 PRU_1834     TRUE 0.996 41.000 0.327 NA   0.919
 10144418 10144419 PRU_1834 PRU_1835   ftsX TRUE 0.959 35.000 0.155 NA   0.526
 10144421 10144422 PRU_1837 PRU_1838     FALSE 0.231 491.000 0.000 NA   0.736
 10144422 10144423 PRU_1838 PRU_1839     FALSE 0.002 348.000 0.000 NA   0.161
 10144424 10144425 PRU_1841 PRU_1842     FALSE 0.173 168.000 0.000 NA   0.651
 10144425 10144426 PRU_1842 PRU_1843     TRUE 0.787 72.000 0.000 NA   0.776
 10144426 10144427 PRU_1843 PRU_1844     FALSE 0.593 120.000 0.000 0.054   0.772
 10144427 10144428 PRU_1844 PRU_1845     FALSE 0.330 119.000 0.000 1.000   0.703
 10144429 10144430 PRU_1846 PRU_1847     TRUE 0.979 83.000 0.200 1.000 Y 0.932
 10144430 10144431 PRU_1847 PRU_1848     TRUE 0.974 2.000 0.000 NA   0.896
 10144431 10144432 PRU_1848 PRU_1849   acrA TRUE 0.973 31.000 0.000 NA   0.801
 10144432 10144433 PRU_1849 PRU_1850 acrA   FALSE 0.175 163.000 0.000 1.000   0.648
 10144433 10144434 PRU_1850 PRU_1851     TRUE 0.806 -49.000 0.000 NA   NA
 10144434 10144435 PRU_1851 PRU_1852     TRUE 0.981 -10.000 0.625 NA   NA
 10144435 10144436 PRU_1852 PRU_1853     TRUE 0.944 2.000 0.000 NA   0.779
 10144436 10144437 PRU_1853 PRU_1854     FALSE 0.022 64.000 0.000 NA   0.133
 10144438 10144439 PRU_1855 PRU_1856     TRUE 0.975 32.000 0.000 1.000 N 0.824
 10144439 10144440 PRU_1856 PRU_1857     TRUE 0.968 -3.000 0.000 NA   0.967
 10144440 10144441 PRU_1857 PRU_1858     FALSE 0.097 90.000 0.026 NA   -0.036
 10144441 10144442 PRU_1858 PRU_1859     TRUE 0.980 -3.000 0.708 NA   NA
 10144442 10144443 PRU_1859 PRU_1860   tpiA TRUE 0.946 51.000 0.330 NA   NA
 10144443 10144444 PRU_1860 PRU_1861 tpiA   TRUE 0.982 27.000 0.191 NA   0.617
 10144444 10144445 PRU_1861 PRU_1862   folE TRUE 0.996 0.000 0.296 NA   0.915
 10144445 10144446 PRU_1862 PRU_1863 folE   TRUE 0.984 13.000 0.000 NA   0.889
 10144446 10144447 PRU_1863 PRU_1864     FALSE 0.586 37.000 0.000 NA   0.458
 10144447 10144448 PRU_1864 PRU_1865     TRUE 0.723 6.000 0.000 0.020 Y 0.111
 10144449 10144450 PRU_1866 PRU_1867     FALSE 0.443 72.000 0.000 NA   NA
 10144450 10144451 PRU_1867 PRU_1868   tdk TRUE 0.926 -25.000 0.032 NA   NA
 10144452 10144453 PRU_1869 PRU_1870     TRUE 0.863 3.000 0.009 NA   0.570
 10144454 10144455 PRU_1871 PRU_1872     FALSE 0.471 243.000 0.000 NA   0.831
 10144455 10144456 PRU_1872 PRU_1873     TRUE 0.838 29.000 0.000 NA   0.578
 10144457 10144458 PRU_1874 PRU_1875     TRUE 0.999 21.000 0.857 1.000   0.977
 10144458 10144459 PRU_1875 PRU_1876     TRUE 0.998 24.000 0.333 NA   0.886
 10144459 10144460 PRU_1876 PRU_1877     FALSE 0.003 246.000 0.000 NA   0.210
 10144462 10144463 PRU_1879 PRU_1880     TRUE 0.897 -13.000 0.000 NA   0.723
 10144463 10144464 PRU_1880 PRU_1881     FALSE 0.004 126.000 0.000 NA   0.206
 10144464 10144465 PRU_1881 PRU_1882     FALSE 0.002 348.000 0.000 NA   0.259
 10144465 10144466 PRU_1882 PRU_1883     TRUE 0.682 124.000 0.000 1.000   0.955
 10144466 10144467 PRU_1883 PRU_1884     TRUE 0.871 77.000 0.000 NA   0.895
 10144467 10144468 PRU_1884 PRU_1885     FALSE 0.598 114.000 0.000 NA   0.797
 10144468 10144469 PRU_1885 PRU_1886     FALSE 0.002 320.000 0.000 NA   -0.217
 10144469 10144470 PRU_1886 PRU_1887     TRUE 0.998 20.000 0.357 NA   0.936
 10144470 10144471 PRU_1887 PRU_1888     FALSE 0.002 353.000 0.000 NA   0.152
 10144471 10144472 PRU_1888 PRU_1889     TRUE 0.993 61.000 0.800 NA   0.915
 10144474 10144475 PRU_1891 PRU_1892   pyrH FALSE 0.415 62.000 0.003 1.000 N 0.456
 10144476 10144477 PRU_1893 PRU_1894     TRUE 0.979 4.000 0.000 NA   0.944
 10144477 10144478 PRU_1894 PRU_1895   psd TRUE 0.995 34.000 0.466 1.000 Y 0.730
 10144479 10144480 PRU_1896 PRU_1897 dnaE trx FALSE 0.424 65.000 0.047 1.000 N 0.177
 10144481 10144482 PRU_1898 PRU_1899     TRUE 0.783 47.000 0.033 1.000   0.450
 10144482 10144483 PRU_1899 PRU_1900     TRUE 0.976 18.000 0.000 1.000   0.808
 10144483 10144484 PRU_1900 PRU_1901     TRUE 0.803 48.000 0.000 NA   0.699
 10144484 10144485 PRU_1901 PRU_1902   aroA TRUE 0.877 25.000 0.000 NA   0.619
 10144486 10144487 PRU_1903 PRU_1904 pelA   FALSE 0.318 86.000 0.000 NA   NA
 10144488 10144489 PRU_1906 PRU_1907     FALSE 0.003 180.000 0.000 NA   0.165
 10144489 10144490 PRU_1907 PRU_1908     FALSE 0.142 44.000 0.000 NA   0.342
 10144490 10144491 PRU_1908 PRU_1909     TRUE 0.862 16.000 0.000 NA   0.609
 10144491 10144492 PRU_1909 PRU_1910     FALSE 0.318 86.000 0.000 NA   NA
 10144493 10144494 PRU_1911 PRU_1912     FALSE 0.572 88.000 0.030 NA   NA
 10144494 10144495 PRU_1912 PRU_1913   ribBA TRUE 0.950 40.000 0.098 1.000   NA
 10144495 10144496 PRU_1913 PRU_1914 ribBA aatA TRUE 0.682 103.000 0.092 1.000 N 0.661
 10144496 10144497 PRU_1914 PRU_1915 aatA   FALSE 0.086 118.000 0.000 1.000   0.469
 10144497 10144498 PRU_1915 PRU_1916     TRUE 0.998 43.000 0.980 0.040   0.965
 10144498 10144499 PRU_1916 PRU_1917     TRUE 0.998 8.000 0.373 0.036   0.996
 10144499 10144500 PRU_1917 PRU_1918     TRUE 0.999 23.000 0.500 0.090   0.862
 10144500 10144501 PRU_1918 PRU_1919     TRUE 0.978 21.000 0.172 NA N 0.615
 10144501 10144502 PRU_1919 PRU_1920     FALSE 0.612 76.000 0.052 NA   0.490
 10144505 10144506 PRU_1923 PRU_1924     TRUE 0.935 5.000 0.089 0.002   0.229
 10144507 10144508 PRU_1925 PRU_1927 rplS   FALSE 0.010 275.000 0.000 1.000   0.347
 10144508 10144509 PRU_1927 PRU_1928     TRUE 0.987 30.000 0.004 NA   0.845
 10144509 10144510 PRU_1928 PRU_1929     FALSE 0.125 22.000 0.000 NA   -0.179
 10144511 10144512 PRU_1930 PRU_1931     TRUE 0.991 7.000 0.528 1.000 Y NA
 10144512 10144513 PRU_1931 PRU_1932     TRUE 0.994 45.000 0.319 0.090 N 0.822
 10144513 10144514 PRU_1932 PRU_1933     TRUE 0.999 32.000 0.833 0.090 Y 0.882
 10144514 10144515 PRU_1933 PRU_1934     TRUE 0.969 83.000 0.294 1.000 Y 0.799
 10144515 10144516 PRU_1934 PRU_1935     FALSE 0.062 42.000 0.000 1.000 N 0.223
 10144516 10144517 PRU_1935 PRU_1936     TRUE 0.980 -16.000 0.526 NA   NA
 10144517 10144518 PRU_1936 PRU_1937     TRUE 0.832 6.000 0.000 NA   NA
 10144518 10144519 PRU_1937 PRU_1938     TRUE 0.864 20.000 0.000 NA   NA
 10144520 10144521 PRU_1939 PRU_1940     FALSE 0.093 92.000 0.000 NA   0.431
 10144523 10144524 PRU_1942 PRU_1943   ispD TRUE 0.941 0.000 0.024 NA   0.695
 10144524 10144525 PRU_1943 PRU_1944 ispD recG FALSE 0.567 0.000 0.028 1.000 N 0.121
 10144525 10144526 PRU_1944 PRU_1945 recG   FALSE 0.009 90.000 0.000 NA N -0.241
 10144526 10144527 PRU_1945 PRU_1946     FALSE 0.239 161.000 0.000 NA   0.707
 10144527 10144528 PRU_1946 PRU_1947     FALSE 0.026 60.000 0.000 1.000   0.319
 10144529 10144530 PRU_1948 PRU_1949     FALSE 0.003 196.000 0.000 NA   0.115
 10144531 10144532 PRU_1950 PRU_1951     TRUE 0.995 45.000 0.375 NA   0.955
 10144532 10144533 PRU_1951 PRU_1952     TRUE 0.966 86.000 0.250 NA   0.954
 10144533 10144534 PRU_1952 PRU_1953     TRUE 0.996 36.000 0.222 NA   0.940
 10144534 10144535 PRU_1953 PRU_1954     TRUE 0.968 1.000 0.000 NA   0.857
 10144535 10144536 PRU_1954 PRU_1955     TRUE 0.971 -3.000 0.000 NA   0.947
 10144536 10144537 PRU_1955 PRU_1956     TRUE 0.970 -3.000 0.000 NA   0.952
 10144538 10144539 PRU_1957 PRU_1958 glnA_2 dapF FALSE 0.349 197.000 0.000 1.000   0.768
 10144539 10144540 PRU_1958 PRU_1959 dapF gltD TRUE 0.993 25.000 0.002 1.000 Y 0.922
 10144540 10144541 PRU_1959 PRU_1960 gltD gltA_2 TRUE 0.975 92.000 0.099 0.001 Y 0.877
 10144541 10144542 PRU_1960 PRU_1961 gltA_2   FALSE 0.117 156.000 0.000 NA   0.589
 10144542 10144543 PRU_1961 PRU_1962     TRUE 0.977 6.000 0.000 NA   0.857
 10144543 10144544 PRU_1962 PRU_1963     FALSE 0.275 250.000 0.000 NA   0.748
 10144544 10144545 PRU_1963 PRU_1965     FALSE 0.011 1162.000 0.000 NA   0.361
 10144546 10144547 PRU_1967 PRU_1968     TRUE 0.988 -7.000 0.636 NA   0.706
 10144549 10144550 PRU_1970 PRU_1972   pyrG FALSE 0.002 437.000 0.000 1.000   0.065
 10144550 10144551 PRU_1972 PRU_1973 pyrG   TRUE 0.776 42.000 0.000 1.000 Y 0.503
 10144553 10144