MicrobesOnline Operon Predictions for Salmonella enterica, Typhi Ty2

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 345206 345207 t0001 t0002 thrL thrA FALSE 0.256 82.000 0.043 1.000   NA
 345207 345208 t0002 t0003 thrA thrB TRUE 0.986 2.000 0.133 1.000 Y NA
 345208 345209 t0003 t0004 thrB thrC TRUE 0.990 4.000 0.233 1.000 Y NA
 345210 345211 t0005 t0006 yaaA yaaJ FALSE 0.205 79.000 0.028 NA   NA
 345212 345213 t0007 t0008 talB mog FALSE 0.102 111.000 0.042 1.000 N NA
 345214 345215 t0009 t0010 yaaH   FALSE 0.162 150.000 0.000 NA   NA
 345215 345216 t0010 t0011   yaaI TRUE 0.566 36.000 0.000 NA   NA
 345217 345218 t0012 t0013 dnaK dnaJ TRUE 0.916 86.000 0.236 0.004 Y NA
 345218 345219 t0013 t0014 dnaJ   FALSE 0.009 285.000 0.000 1.000 N NA
 345219 345220 t0014 t0015     TRUE 0.747 127.000 0.600 NA   NA
 345221 345222 t0016 t0017     TRUE 0.969 17.000 0.600 NA   NA
 345223 345224 t0018 t0019     TRUE 0.603 32.000 0.000 NA   NA
 345224 345225 t0019 t0020     TRUE 0.510 43.000 0.000 NA   NA
 345225 345226 t0020 t0021     FALSE 0.017 281.000 0.000 NA   NA
 345226 345227 t0021 t0022   bcfA FALSE 0.006 428.000 0.000 NA   NA
 345227 345228 t0022 t0023 bcfA bcfB TRUE 0.898 101.000 0.500 1.000 Y NA
 345228 2200549 t0023 t0024 bcfB bcfC TRUE 0.895 5.000 0.000 NA   NA
 2200549 345229 t0024 t0025 bcfC bcfD TRUE 0.917 1.000 0.000 NA   NA
 345229 345230 t0025 t0026 bcfD bcfE TRUE 0.996 1.000 0.500 NA Y NA
 345230 345231 t0026 t0027 bcfE bcfF TRUE 0.996 16.000 0.667 0.010 Y NA
 345231 345232 t0027 t0028 bcfF bcfG TRUE 0.994 -7.000 0.500 1.000 Y NA
 345232 345233 t0028 t0029 bcfG   TRUE 0.710 65.000 0.167 0.016 N NA
 345233 345234 t0029 t0030     TRUE 0.543 39.000 0.000 NA   NA
 345239 345240 t0035 t0036     FALSE 0.291 99.000 0.000 NA   NA
 345241 345242 t0037 t0038     TRUE 0.636 99.000 0.286 1.000   NA
 345242 345243 t0038 t0039     FALSE 0.017 288.000 0.000 1.000   NA
 345243 345244 t0039 t0040     FALSE 0.237 127.000 0.000 NA   NA
 345244 345245 t0040 t0041   nhaA FALSE 0.122 163.000 0.000 NA   NA
 345245 345246 t0041 t0042 nhaA nhaR TRUE 0.661 62.000 0.292 1.000 N NA
 345247 345248 t0043 t0044     TRUE 0.923 40.000 0.231 1.000 Y NA
 345248 345249 t0044 t0045   rpsT FALSE 0.003 457.000 0.000 1.000 N NA
 345250 345251 t0046 t0047   ribF TRUE 0.785 8.000 0.019 NA   NA
 345251 345252 t0047 t0048 ribF ileS TRUE 0.724 45.000 0.254 1.000 N NA
 345252 345253 t0048 t0049 ileS lspA TRUE 0.796 0.000 0.045 1.000 N NA
 345253 345254 t0049 t0050 lspA fkpB FALSE 0.198 155.000 0.154 1.000 N NA
 345254 345255 t0050 t0051 fkpB lytB TRUE 0.987 3.000 0.626 1.000 N NA
 345255 345256 t0051 t0052 lytB   FALSE 0.055 200.000 0.000 NA   NA
 345256 345257 t0052 t0053   yaaF TRUE 0.785 16.000 0.000 NA   NA
 345258 345259 t0054 t0055 citB citA TRUE 0.998 2.000 1.000 1.000 Y NA
 345259 345260 t0055 t0056 citA oadB FALSE 0.132 135.000 0.068 1.000 N NA
 345260 345261 t0056 t0057 oadB oadA TRUE 0.998 13.000 0.886 0.002 Y NA
 345261 345262 t0057 t0058 oadA oadG TRUE 0.997 16.000 0.720 0.002 Y NA
 345262 345263 t0058 t0059 oadG citC FALSE 0.385 159.000 0.060 1.000 Y NA
 345264 345265 t0060 t0061 citC citD TRUE 0.968 30.000 0.426 1.000 Y NA
 345265 345266 t0061 t0062 citD citE TRUE 0.995 -3.000 0.537 0.002 N NA
 345266 345267 t0062 t0063 citE citF TRUE 0.987 11.000 0.373 0.001 N NA
 345267 345268 t0063 t0064 citF citX TRUE 0.967 0.000 0.231 1.000 N NA
 345268 345269 t0064 t0065 citX citG TRUE 0.989 -22.000 0.400 1.000 Y NA
 345269 345270 t0065 t0066 citG dapB FALSE 0.009 180.000 0.002 1.000 N NA
 345270 345271 t0066 t0067 dapB carA FALSE 0.012 853.000 0.034 1.000 Y NA
 345271 345272 t0067 t0068 carA carB TRUE 0.993 16.000 0.345 0.001 Y NA
 345272 345273 t0068 t0069 carB caiF FALSE 0.019 274.000 0.000 NA   NA
 345274 345275 t0070 t0071 caiE caiD FALSE 0.296 112.000 0.069 1.000   NA
 345275 345276 t0071 t0072 caiD caiC TRUE 0.881 54.000 0.000 0.028 Y NA
 345276 345277 t0072 t0073 caiC caiB TRUE 0.701 63.000 0.154 0.028 N NA
 345277 345278 t0073 t0074 caiB caiA TRUE 0.709 112.000 0.529 1.000 N NA
 345278 345279 t0074 t0075 caiA caiT FALSE 0.430 35.000 0.000 1.000 N NA
 345280 345281 t0076 t0077 fixA fixB TRUE 0.972 16.000 0.000 0.021 Y NA
 345281 345282 t0077 t0078 fixB fixC TRUE 0.883 50.000 0.000 0.059 Y NA
 345282 345283 t0078 t0079 fixC fixX TRUE 0.991 -3.000 0.000 0.059 Y NA
 345283 345284 t0079 t0080 fixX yaaU FALSE 0.104 148.000 0.000 1.000 N NA
 345284 345285 t0080 t0081 yaaU   FALSE 0.297 89.000 0.000 NA   NA
 345285 345286 t0081 t0082     FALSE 0.016 285.000 0.000 NA   NA
 345288 345289 t0084 t0085     FALSE 0.005 494.000 0.000 NA   NA
 345289 345290 t0085 t0086     FALSE 0.455 52.000 0.000 NA   NA
 345290 345291 t0086 t0087     TRUE 0.924 -3.000 0.000 NA   NA
 345291 345292 t0087 t0088   yabF FALSE 0.007 407.000 0.000 NA   NA
 345292 345293 t0088 t0089 yabF kefC TRUE 0.987 -7.000 0.560 1.000   NA
 345293 345294 t0089 t0090 kefC folA FALSE 0.007 199.000 0.012 1.000 N NA
 345295 345296 t0091 t0092 apaH apaG TRUE 0.939 11.000 0.267 NA N NA
 345296 345297 t0092 t0093 apaG ksgA TRUE 0.854 3.000 0.078 NA N NA
 345297 345298 t0093 t0094 ksgA pdxA TRUE 0.959 -3.000 0.197 1.000 N NA
 345298 345299 t0094 t0095 pdxA surA TRUE 0.988 0.000 0.561 1.000 N NA
 345299 345300 t0095 t0096 surA imp TRUE 0.582 54.000 0.182 1.000 N NA
 345302 345303 t0098 t0099 rluA hepA TRUE 0.942 12.000 0.294 1.000 N NA
 345303 345304 t0099 t0100 hepA polB TRUE 0.529 174.000 0.098 0.071 Y NA
 345304 2200550 t0100 t0103 polB   TRUE 0.485 47.000 0.000 NA   NA
 2200550 345305 t0103 t0101     TRUE 0.805 -733.000 0.000 NA   NA
 345306 345307 t0102 t0104     FALSE 0.004 992.000 0.000 NA   NA
 345308 345309 t0105 t0106 araD araA FALSE 0.436 141.000 0.017 1.000 Y NA
 345309 345310 t0106 t0107 araA araB TRUE 0.884 11.000 0.138 1.000 N NA
 345311 345312 t0108 t0109 araC yabI FALSE 0.441 119.000 0.167 NA   NA
 345313 345314 t0110 t0111 yabJ yabK TRUE 0.986 -16.000 0.522 0.019 N NA
 345314 345315 t0111 t0112 yabK tbpA TRUE 0.988 -24.000 0.697 0.079 N NA
 345315 345316 t0112 t0113 tbpA yabN FALSE 0.209 178.000 0.000 0.079   NA
 345316 345317 t0113 t0114 yabN leuD FALSE 0.005 550.000 0.000 1.000   NA
 345317 345318 t0114 t0115 leuD leuC TRUE 0.995 11.000 0.309 0.001 Y NA
 345318 345319 t0115 t0116 leuC leuB TRUE 0.997 3.000 0.275 0.002 Y NA
 345319 345320 t0116 t0117 leuB leuA TRUE 0.995 0.000 0.126 0.002 Y NA
 345320 345321 t0117 t0118 leuA leuL TRUE 0.556 88.000 0.010 0.002   NA
 345322 345323 t0119 t0120 leuO ilvI FALSE 0.006 322.000 0.000 1.000 N NA
 345323 345324 t0120 t0121 ilvI ilvH TRUE 0.998 0.000 0.371 0.002 Y NA
 345324 345325 t0121 t0122 ilvH fruR FALSE 0.008 284.000 0.063 1.000 N NA
 345325 345326 t0122 t0123 fruR yabB FALSE 0.004 606.000 0.000 NA   NA
 345326 345327 t0123 t0124 yabB yabC TRUE 0.991 2.000 0.635 NA   NA
 345327 345328 t0124 t0125 yabC ftsL TRUE 0.966 -3.000 0.227 1.000 N NA
 345328 345329 t0125 t0126 ftsL ftsI TRUE 0.810 16.000 0.124 1.000 N NA
 345329 345330 t0126 t0127 ftsI murE TRUE 0.962 -13.000 0.059 1.000 Y NA
 345330 345331 t0127 t0128 murE murF TRUE 0.999 -3.000 0.569 0.002 Y NA
 345331 345332 t0128 t0129 murF mraY TRUE 0.996 -6.000 0.309 0.005 Y NA
 345332 345333 t0129 t0130 mraY murD TRUE 0.998 3.000 0.647 0.005 Y NA
 345333 345334 t0130 t0131 murD ftsW TRUE 0.991 0.000 0.297 0.003 N NA
 345334 345335 t0131 t0132 ftsW murG TRUE 0.990 -3.000 0.647 1.000 N NA
 345335 345336 t0132 t0133 murG murC TRUE 0.808 119.000 0.283 1.000 Y NA
 345336 345337 t0133 t0134 murC ddlB TRUE 0.993 -7.000 0.153 0.005 Y NA
 345337 345338 t0134 t0135 ddlB ftsQ TRUE 0.994 2.000 0.372 NA Y NA
 345338 345339 t0135 t0136 ftsQ ftsA TRUE 0.980 -3.000 0.389 NA N NA
 345339 345340 t0136 t0137 ftsA ftsZ TRUE 0.926 61.000 0.460 1.000 Y NA
 345340 345341 t0137 t0138 ftsZ lpxC FALSE 0.344 101.000 0.134 1.000 N NA
 345341 345342 t0138 t0139 lpxC yacA FALSE 0.019 281.000 0.000 1.000   NA
 345342 345343 t0139 t0140 yacA secA FALSE 0.399 62.000 0.065 1.000   NA
 345343 345344 t0140 t0141 secA mutT FALSE 0.209 156.000 0.168 1.000 N NA
 345347 345348 t0144 t0145 yacG yacF TRUE 0.972 10.000 0.356 NA   NA
 345348 345349 t0145 t0146 yacF yacE TRUE 0.950 0.000 0.110 NA   NA
 345351 345352 t0148 t0149 hofC hofB TRUE 0.994 -10.000 0.571 1.000 Y NA
 345352 345353 t0149 t0150 hofB ppdD TRUE 0.994 10.000 0.556 NA Y NA
 345353 345354 t0150 t0151 ppdD nadC FALSE 0.003 222.000 0.015 NA N NA
 345355 345356 t0152 t0153 ampD ampE TRUE 0.992 -3.000 0.249 1.000 Y NA
 345357 345358 t0154 t0155     TRUE 0.984 0.000 0.333 1.000   NA
 345358 345359 t0155 t0156   aroP FALSE 0.249 164.000 0.238 1.000 N NA
 345360 345361 t0157 t0158 pdhR aceE FALSE 0.298 160.000 0.276 1.000 N NA
 345361 345362 t0158 t0159 aceE aceF TRUE 0.976 15.000 0.220 1.000 Y NA
 345362 345363 t0159 t0160 aceF lpdA TRUE 0.539 199.000 0.463 1.000 Y NA
 345363 345364 t0160 t0161 lpdA   FALSE 0.016 289.000 0.000 NA   NA
 345365 345366 t0162 t0163   yacH TRUE 0.827 13.000 0.000 NA   NA
 345367 345368 t0164 t0165 acnB   FALSE 0.074 188.000 0.068 NA   NA
 345368 345369 t0165 t0166   kdgT FALSE 0.030 235.000 0.000 NA   NA
 345369 345370 t0166 t0167 kdgT ygbK TRUE 0.924 -3.000 0.000 NA   NA
 345370 345371 t0167 t0168 ygbK   TRUE 0.973 -10.000 0.361 NA   NA
 345371 345372 t0168 t0169     TRUE 0.977 10.000 0.533 1.000 N NA
 345373 345374 t0170 t0171 speD speE TRUE 0.949 21.000 0.162 1.000 Y NA
 345374 345375 t0171 t0172 speE yacC TRUE 0.682 107.000 0.354 NA   NA
 345380 345381 t0178 t0177 yadG yadH TRUE 0.997 -3.000 0.688 1.000 Y NA
 345381 345382 t0177 t0179 yadH yadI FALSE 0.093 105.000 0.037 1.000 N NA
 345382 345383 t0179 t0180 yadI yadE TRUE 0.849 68.000 0.222 1.000 Y NA
 345384 345385 t0181 t0182 panD panC TRUE 0.857 95.000 0.342 1.000 Y NA
 345385 345386 t0182 t0183 panC panB TRUE 0.934 126.000 0.395 0.001 Y NA
 345386 345387 t0183 t0184 panB staG FALSE 0.183 110.000 0.000 1.000 N NA
 345387 345388 t0184 t0185 staG staF TRUE 0.929 37.000 0.000 0.010 Y NA
 345388 345389 t0185 t0186 staF staE TRUE 0.996 0.000 0.571 0.010   NA
 345389 345390 t0186 t0187 staE staD TRUE 0.993 9.000 0.571 0.010   NA
 345390 345391 t0187 t0188 staD staC TRUE 0.983 -13.000 0.571 1.000   NA
 345391 345392 t0188 t0189 staC staB TRUE 0.955 75.000 1.000 1.000 Y NA
 345392 345393 t0189 t0190 staB staA TRUE 0.676 179.000 0.500 1.000 Y NA
 345393 345394 t0190 t0191 staA folK FALSE 0.004 395.000 0.000 1.000 N NA
 345394 345395 t0191 t0192 folK pcnB TRUE 0.967 -3.000 0.234 1.000 N NA
 345395 345396 t0192 t0193 pcnB yadB TRUE 0.623 141.000 0.131 1.000 Y NA
 345396 345397 t0193 t0194 yadB dksA TRUE 0.570 69.000 0.231 1.000 N NA
 345397 345398 t0194 t0195 dksA sfsA FALSE 0.177 177.000 0.151 NA   NA
 345398 345399 t0195 t0196 sfsA ligT TRUE 0.696 17.000 0.045 NA   NA
 345400 345401 t0197 t0198 hrpB mrcB FALSE 0.271 141.000 0.158 1.000 N NA
 345401 2200551 t0198 t0199 mrcB fhuA FALSE 0.015 293.000 0.000 NA   NA
 2200551 345402 t0199 t0200 fhuA fhuC TRUE 0.472 49.000 0.000 NA   NA
 345402 345403 t0200 t0201 fhuC fhuD TRUE 0.979 0.000 0.047 1.000 Y NA
 345403 345404 t0201 t0202 fhuD fhuB TRUE 0.984 -3.000 0.087 1.000 Y NA
 345406 345407 t0204 t0205 yadQ yadR FALSE 0.417 37.000 0.031 NA   NA
 345408 345409 t0206 t0207 yadS btuF TRUE 0.789 37.000 0.213 NA   NA
 345409 345410 t0207 t0208 btuF mtn TRUE 0.833 -7.000 0.073 1.000 N NA
 345411 345412 t0209 t0210 dgt htrA FALSE 0.217 130.000 0.101 1.000 N NA
 345412 345413 t0210 t0211 htrA yaeG FALSE 0.098 153.000 0.080 NA N NA
 345415 345416 t0214 t0215 dapD glnD TRUE 0.591 30.000 0.097 1.000 N NA
 345416 345417 t0215 t0216 glnD map TRUE 0.486 113.000 0.243 1.000 N NA
 345418 345419 t0217 t0218 rpsB tsf FALSE 0.426 258.000 0.748 1.000 Y NA
 345419 345420 t0218 t0219 tsf pyrH TRUE 0.515 145.000 0.416 1.000 N NA
 345420 345421 t0219 t0220 pyrH frr TRUE 0.623 147.000 0.626 1.000 N NA
 345421 345422 t0220 t0221 frr dxr FALSE 0.050 142.000 0.032 1.000 N NA
 345422 345423 t0221 t0222 dxr   FALSE 0.038 313.000 0.025 1.000 Y NA
 345423 345424 t0222 t0223   cdsA TRUE 0.988 13.000 0.400 1.000 Y NA
 345424 345425 t0223 t0224 cdsA yaeL TRUE 0.779 12.000 0.080 1.000 N NA
 345425 345426 t0224 t0225 yaeL yaeT TRUE 0.932 32.000 0.204 1.000 Y NA
 345426 345427 t0225 t0226 yaeT ompH TRUE 0.834 123.000 0.354 1.000 Y NA
 345427 345428 t0226 t0227 ompH lpxD TRUE 0.997 4.000 0.814 1.000 Y NA
 345428 345429 t0227 t0228 lpxD fabZ TRUE 0.808 106.000 0.796 1.000 N NA
 345429 345430 t0228 t0229 fabZ lpxA TRUE 0.990 4.000 0.850 1.000 N NA
 345430 345431 t0229 t0230 lpxA lpxB TRUE 0.993 0.000 0.289 1.000 Y NA
 345431 345432 t0230 t0231 lpxB rnhB TRUE 0.957 -3.000 0.186 1.000 N NA
 345432 345433 t0231 t0232 rnhB dnaE TRUE 0.923 24.000 0.104 1.000 Y NA
 345433 345434 t0232 t0233 dnaE accA TRUE 0.845 13.000 0.122 1.000 N NA
 345434 345435 t0233 t0234 accA tnpA FALSE 0.038 192.000 0.000 1.000 N NA
 345435 2200553 t0234 t0235 tnpA   FALSE 0.026 243.000 0.000 NA   NA
 2200553 345436 t0235 t0236   ldcC FALSE 0.338 73.000 0.000 NA   NA
 345436 345437 t0236 t0237 ldcC   TRUE 0.725 56.000 0.039 1.000 Y NA
 345437 345438 t0237 t0238   mesJ FALSE 0.075 63.000 0.015 1.000 N NA
 345439 345440 t0239 t0240 rof yaeP TRUE 0.953 -7.000 0.179 NA   NA
 345441 345442 t0241 t0242 yaeQ yaeJ TRUE 0.889 -3.000 0.034 1.000   NA
 345442 345443 t0242 t0243 yaeJ cutF FALSE 0.449 32.000 0.027 NA   NA
 345444 345445 t0244 t0245 tnpA proS FALSE 0.022 219.000 0.000 1.000 N NA
 345445 345446 t0245 t0246 proS yaeB FALSE 0.224 111.000 0.048 NA   NA
 345446 345447 t0246 t0247 yaeB rcsF TRUE 0.977 -3.000 0.247 NA   NA
 345447 345448 t0247 t0248 rcsF yaeC TRUE 0.725 119.000 0.500 NA   NA
 345448 345449 t0248 t0249 yaeC yaeE TRUE 0.953 39.000 0.411 NA Y NA
 345449 345450 t0249 t0250 yaeE abc TRUE 0.995 8.000 0.584 1.000 Y NA
 345451 2200554 t0251 t0252 yaeD   FALSE 0.008 378.000 0.000 NA   NA
 2200554 400769 t0252 t0253   tRNA-Glu FALSE 0.302 87.000 0.000 NA   NA
 400769 2200555 t0253 t0254 tRNA-Glu   FALSE 0.063 194.000 0.000 NA   NA
 2200555 406782 t0254 t4650   rrf FALSE 0.292 101.000 0.000 NA   NA
 406782 345452 t4650 t0255 rrf   FALSE 0.006 423.000 0.000 NA   NA
 345452 345453 t0255 t0256   kgtP FALSE 0.242 104.000 0.051 NA   NA
 345454 345455 t0257 t0258 yfiM pssA TRUE 0.563 45.000 0.089 NA   NA
 345455 345456 t0258 t0259 pssA   TRUE 0.508 115.000 0.121 0.063 N NA
 345456 345457 t0259 t0260     TRUE 0.712 54.000 0.222 NA   NA
 345457 345458 t0260 t0261   yfiG FALSE 0.383 73.000 0.084 NA   NA
 345466 345467 t0270 t0271 rpoE rseA TRUE 0.929 32.000 0.705 NA N NA
 345467 345468 t0271 t0272 rseA rseB TRUE 0.998 0.000 0.856 NA Y NA
 345468 345469 t0272 t0273 rseB rseC TRUE 0.997 -3.000 0.609 NA Y NA
 345469 345470 t0273 t0274 rseC lepA FALSE 0.006 259.000 0.045 NA N NA
 345470 345471 t0274 t0275 lepA lepB TRUE 0.901 17.000 0.187 1.000   NA
 345471 345472 t0275 t0277 lepB rnc FALSE 0.033 274.000 0.117 1.000   NA
 345472 345473 t0277 t0276 rnc era TRUE 0.981 -3.000 0.127 0.059   NA
 345473 345474 t0276 t0278 era recO TRUE 0.897 12.000 0.109 1.000   NA
 345474 345475 t0278 t0279 recO pdxJ TRUE 0.890 12.000 0.166 1.000 N NA
 345475 345476 t0279 t0280 pdxJ acpS TRUE 0.977 0.000 0.326 1.000 N NA
 345477 345478 t0281 t0282     TRUE 0.469 53.000 0.000 1.000   NA
 345479 345480 t0283 t0284     TRUE 0.566 22.000 0.000 1.000 N NA
 345482 345483 t0286 t0287     TRUE 0.917 11.000 0.125 1.000   NA
 345483 345484 t0287 t0288   yfhB TRUE 0.908 4.000 0.125 NA N NA
 345484 345485 t0288 t0289 yfhB yfhC FALSE 0.461 25.000 0.062 NA N NA
 345487 345488 t0291 t0292 purL   FALSE 0.002 695.000 0.000 1.000 N NA
 345488 345489 t0292 t0294   yfhG TRUE 0.914 2.000 0.000 NA   NA
 345489 345490 t0294 t0293 yfhG yfhA TRUE 0.924 -3.000 0.000 NA   NA
 345490 345491 t0293 t0295 yfhA glnB FALSE 0.400 77.000 0.146 1.000 N NA
 345492 345493 t0296 t0297   cadA TRUE 0.927 56.000 0.400 1.000 Y NA
 345493 345494 t0297 t0298 cadA cadB TRUE 0.669 83.000 0.000 1.000 Y NA
 345494 345495 t0298 t0299 cadB cadC FALSE 0.005 349.000 0.000 1.000 N NA
 345495 345496 t0299 t0300 cadC hmpA FALSE 0.050 181.000 0.000 1.000 N NA
 345497 345498 t0301 t0302 glyA hcaT FALSE 0.063 185.000 0.044 1.000   NA
 345500 2200557 t0304 t0305     TRUE 0.478 48.000 0.000 NA   NA
 345501 345502 t0306 t0307 asrC asrB TRUE 0.997 11.000 0.636 0.035 Y NA
 345502 345503 t0307 t0308 asrB asrA TRUE 0.989 4.000 0.318 0.035   NA
 345503 345504 t0308 t0309 asrA   FALSE 0.084 182.000 0.000 NA   NA
 345504 345505 t0309 t0310   suhB FALSE 0.087 145.000 0.003 NA   NA
 345506 345507 t0311 t0312   yfhP FALSE 0.031 242.000 0.126 1.000 N NA
 345507 345508 t0312 t0313 yfhP   FALSE 0.312 181.000 0.424 1.000 N NA
 345508 345509 t0313 t0314   nifU TRUE 0.901 28.000 0.448 1.000 N NA
 345509 345510 t0314 t0315 nifU yfhF TRUE 0.962 29.000 0.359 0.002   NA
 345510 345511 t0315 t0316 yfhF yfhE FALSE 0.331 197.000 0.500 1.000   NA
 345511 345512 t0316 t0317 yfhE hscA TRUE 0.993 13.000 0.634 1.000 Y NA
 345512 345513 t0317 t0318 hscA fdx TRUE 0.991 2.000 0.794 1.000 N NA
 345513 345514 t0318 t0319 fdx yfhJ TRUE 0.982 12.000 0.625 1.000   NA
 345514 345515 t0319 t0320 yfhJ yfhI TRUE 0.665 54.000 0.171 1.000   NA
 345515 345516 t0320 t0321 yfhI sseB TRUE 0.598 101.000 0.253 NA   NA
 345517 345518 t0322 t0323   sseA FALSE 0.024 247.000 0.000 NA   NA
 345519 345520 t0324 t0325   pbpC TRUE 0.993 1.000 0.711 1.000   NA
 345520 2200558 t0325 t0326 pbpC   FALSE 0.140 156.000 0.000 NA   NA
 2200558 345521 t0326 t0327     TRUE 0.924 -3.000 0.000 NA   NA
 345521 345522 t0327 t0328     TRUE 0.989 -7.000 0.667 1.000   NA
 345522 345523 t0328 t0329     TRUE 0.965 0.000 0.154 1.000   NA
 345523 345524 t0329 t0330   ndk FALSE 0.032 121.000 0.002 1.000 N NA
 345524 345525 t0330 t0331 ndk yfgB FALSE 0.105 207.000 0.156 1.000   NA
 345525 345526 t0331 t0332 yfgB yfgA FALSE 0.008 294.000 0.020 1.000   NA
 345526 345527 t0332 t0333 yfgA gcpE TRUE 0.867 27.000 0.233 1.000   NA
 345527 345528 t0333 t0334 gcpE hisS FALSE 0.443 111.000 0.207 1.000 N NA
 345528 345529 t0334 t0335 hisS   TRUE 0.945 14.000 0.259 1.000   NA
 345529 345530 t0335 t0336     TRUE 0.978 11.000 0.492 1.000   NA
 345530 345531 t0336 t0337     TRUE 0.506 119.000 0.203 1.000   NA
 345531 345532 t0337 t0338     FALSE 0.157 89.000 0.009 NA   NA
 345532 2200559 t0338 t0339   sivH FALSE 0.010 346.000 0.000 NA   NA
 2200559 345533 t0339 t0340 sivH sinI FALSE 0.391 61.000 0.000 NA   NA
 345533 345534 t0340 t0341 sinI ratA TRUE 0.548 120.000 0.250 NA   NA
 345534 2200560 t0341 t0342 ratA ratB FALSE 0.277 112.000 0.000 NA   NA
 2200560 345535 t0342 t0343 ratB ratC TRUE 0.887 7.000 0.000 NA   NA
 345535 2200561 t0343 t0344 ratC shdA FALSE 0.004 566.000 0.000 NA   NA
 345537 345538 t0346 t0347 guaB guaA TRUE 0.929 70.000 0.190 0.001 Y NA
 345538 345539 t0347 t0348 guaA   FALSE 0.299 88.000 0.000 NA   NA
 345540 345541 t0349 t0350     FALSE 0.033 229.000 0.000 NA   NA
 345541 2200562 t0350 t0351     TRUE 0.785 16.000 0.000 NA   NA
 345542 345543 t0352 t0353     FALSE 0.345 71.000 0.000 NA   NA
 345543 345544 t0353 t0354     FALSE 0.289 97.000 0.000 NA   NA
 345545 345546 t0355 t0356 ppx ppk TRUE 0.994 5.000 0.486 1.000 Y NA
 345546 345547 t0356 t0357 ppk purN FALSE 0.011 189.000 0.017 1.000 N NA
 345547 345548 t0357 t0358 purN purM TRUE 0.997 0.000 0.230 0.002 Y NA
 345549 345550 t0359 t0360 upp uraA TRUE 0.707 88.000 0.101 1.000 Y NA
 345550 345551 t0360 t0361 uraA   FALSE 0.154 71.000 0.048 1.000 N NA
 345552 345553 t0362 t0363     TRUE 0.817 40.000 0.259 1.000   NA
 345554 2200563 t0364 t0365     FALSE 0.018 277.000 0.000 NA   NA
 2200563 345555 t0365 t0366     FALSE 0.360 68.000 0.000 NA   NA
 345555 345556 t0366 t0367     TRUE 0.990 6.000 0.295 1.000 Y NA
 345557 345558 t0368 t0369 bcp gcvR TRUE 0.919 0.000 0.102 1.000 N NA
 345559 345560 t0370 t0371 dapA nlpB TRUE 0.974 17.000 0.267 1.000 Y NA
 345560 345561 t0371 t0372 nlpB purC FALSE 0.016 175.000 0.019 1.000 N NA
 345561 345562 t0372 t0373 purC   FALSE 0.128 132.000 0.006 1.000   NA
 345562 345563 t0373 t0374     TRUE 0.695 16.000 0.029 1.000   NA
 345564 345565 t0375 t0376   dapE TRUE 0.479 28.000 0.025 NA   NA
 345565 345566 t0376 t0377 dapE yffB TRUE 0.966 4.000 0.292 1.000 N NA
 345566 345567 t0377 t0378 yffB acrD FALSE 0.002 646.000 0.000 1.000 N NA
 345567 345568 t0378 t0379 acrD narQ FALSE 0.046 185.000 0.000 1.000 N NA
 345571 345572 t0382 t0383 yffH   TRUE 0.605 125.000 0.333 NA   NA
 345572 345573 t0383 t0384     FALSE 0.235 128.000 0.000 NA   NA
 345574 345575 t0385 t0386 tktB talA TRUE 0.989 20.000 0.739 1.000 Y NA
 345576 345577 t0387 t0388 maeB tnpA FALSE 0.042 189.000 0.000 1.000 N NA
 345577 345578 t0388 t0389 tnpA eutS FALSE 0.003 481.000 0.000 1.000 N NA
 345578 345579 t0389 t0390 eutS eutP TRUE 0.937 13.000 0.017 1.000 Y NA
 345579 345580 t0390 t0391 eutP eutQ TRUE 0.937 -22.000 0.017 NA Y NA
 345580 345581 t0391 t0392 eutQ   TRUE 0.991 -3.000 0.214 NA Y NA
 345581 345582 t0392 t0393   eutD TRUE 0.807 -3.000 0.048 1.000 N NA
 345582 345583 t0393 t0394 eutD eutN TRUE 0.899 41.000 0.182 NA Y NA
 345583 345584 t0394 t0395 eutN eutE TRUE 0.957 12.000 0.000 NA Y NA
 345584 345585 t0395 t0396 eutE eutJ TRUE 0.767 11.000 0.000 1.000 N NA
 345585 345586 t0396 t0397 eutJ eutG TRUE 0.794 -10.000 0.000 1.000 N NA
 345586 345587 t0397 t0398 eutG eutH FALSE 0.441 119.000 0.222 1.000 N NA
 345587 345588 t0398 t0399 eutH eutA TRUE 0.981 -3.000 0.000 NA Y NA
 345588 345589 t0399 t0400 eutA eutB TRUE 0.957 12.000 0.000 NA Y NA
 345589 345590 t0400 t0401 eutB eutC TRUE 0.974 19.000 0.000 0.001 Y NA
 345590 345591 t0401 t0402 eutC eutL TRUE 0.960 10.000 0.043 1.000 Y NA
 345591 345592 t0402 t0403 eutL eutK TRUE 0.700 13.000 0.000 NA N NA
 345592 345593 t0403 t0404 eutK yfeG FALSE 0.310 48.000 0.000 NA N NA
 345594 345595 t0405 t0406     FALSE 0.362 129.000 0.133 NA   NA
 345595 345596 t0406 t0407   hemF TRUE 0.711 21.000 0.000 NA   NA
 345596 345597 t0407 t0408 hemF amiA TRUE 0.638 3.000 0.025 1.000 N NA
 345598 345599 t0409 t0410     TRUE 0.843 -13.000 0.059 NA   NA
 345599 345600 t0410 t0411     TRUE 0.639 62.000 0.204 NA   NA
 345600 345601 t0411 t0412     TRUE 0.662 95.000 0.333 NA   NA
 345601 345602 t0412 t0413   yfeF FALSE 0.014 237.000 0.000 NA N NA
 345602 345603 t0413 t0414 yfeF cysP FALSE 0.078 158.000 0.000 1.000 N NA
 345603 345604 t0414 t0415 cysP cysU TRUE 0.994 0.000 0.479 0.002 N NA
 345604 345605 t0415 t0416 cysU cysW TRUE 0.996 0.000 0.583 0.001 N NA
 345605 345606 t0416 t0417 cysW cysA TRUE 0.983 -10.000 0.180 1.000 Y NA
 345606 345607 t0417 t0418 cysA cysM FALSE 0.106 121.000 0.049 1.000 N NA
 345608 345609 t0419 t0420     FALSE 0.404 59.000 0.000 NA   NA
 345609 345610 t0420 t0421   ptsJ TRUE 0.658 15.000 0.059 1.000 N NA
 345611 345612 t0423 t0422 pdxK   TRUE 0.964 -3.000 0.160 NA   NA
 345613 345614 t0424 t0425 crr   TRUE 0.956 41.000 0.203 0.011 Y NA
 345614 345615 t0425 t0426   ptsH TRUE 0.943 49.000 0.187 0.011 Y NA
 345615 345616 t0426 t0427 ptsH cysK FALSE 0.001 384.000 0.019 1.000 N NA
 345616 345617 t0427 t0428 cysK cysZ FALSE 0.048 373.000 0.122 1.000 Y NA
 345618 345619 t0429 t0431   ligA FALSE 0.335 72.000 0.106 1.000 N NA
 345619 345620 t0431 t0430 ligA ypeB TRUE 0.795 -7.000 0.017 NA   NA
 345624 345625 t0435 t0436 xapA xapB TRUE 0.564 55.000 0.111 1.000   NA
 345625 345626 t0436 t0437 xapB xapR FALSE 0.037 269.000 0.130 1.000   NA
 400846 400845 t0438 t0439 tRNA-Lys tRNA-Val TRUE 0.895 5.000 0.000 NA   NA
 400845 400844 t0439 t0440 tRNA-Val tRNA-Val TRUE 0.517 42.000 0.000 NA   NA
 400844 400843 t0440 t0441 tRNA-Val tRNA-Val TRUE 0.492 46.000 0.000 NA   NA
 345628 345629 t0443 t0444 yfeD yfeC TRUE 0.990 2.000 0.250 0.007   NA
 400770 400771 t0445 t0446 tRNA-Ala tRNA-Ala TRUE 0.510 43.000 0.000 NA   NA
 400771 345630 t0446 t0447 tRNA-Ala yfeA FALSE 0.067 191.000 0.000 NA   NA
 345633 345634 t0450 t0451     TRUE 0.525 114.000 0.214 NA   NA
 345637 345638 t0454 t0455 glk   FALSE 0.002 723.000 0.000 1.000 N NA
 345638 345639 t0455 t0456   tnpA FALSE 0.052 179.000 0.000 1.000 N NA
 345643 345644 t0460 t0461 pgtC pgtB TRUE 0.993 -3.000 0.909 1.000 N NA
 345644 345645 t0461 t0462 pgtB pgtA TRUE 0.996 -10.000 0.500 0.100 Y NA
 345645 345646 t0462 t0463 pgtA pgtE FALSE 0.011 268.000 0.000 1.000 N NA
 345646 2200564 t0463 t0464 pgtE   FALSE 0.037 222.000 0.000 NA   NA
 2200564 2200565 t0464 t0465     FALSE 0.007 397.000 0.000 NA   NA
 345647 2200566 t0466 t0467   gtrB FALSE 0.447 53.000 0.000 NA   NA
 2200566 345648 t0467 t0468 gtrB gtrA TRUE 0.822 -31.000 0.000 NA   NA
 400842 345649 t0470 t0471 tRNA-Arg yfdC FALSE 0.330 76.000 0.000 NA   NA
 345652 345653 t0474 t0475     FALSE 0.084 178.000 0.061 NA   NA
 345653 345654 t0475 t0476     TRUE 0.996 0.000 0.430 1.000 Y NA
 345654 345655 t0476 t0477     FALSE 0.027 209.000 0.000 1.000 N NA
 345657 345658 t0479 t0480   aroC TRUE 0.477 36.000 0.081 1.000 N NA
 345658 345659 t0480 t0481 aroC mepA TRUE 0.616 4.000 0.025 1.000 N NA
 345659 345660 t0481 t0482 mepA yfcA TRUE 0.964 0.000 0.160 NA   NA
 345660 2200568 t0482 t0483 yfcA   TRUE 0.924 0.000 0.000 NA   NA
 2200568 345661 t0483 t0484     TRUE 0.590 33.000 0.000 NA   NA
 345663 345664 t0486 t0487 fabB   FALSE 0.290 98.000 0.000 NA   NA
 345665 345666 t0488 t0489     TRUE 0.924 0.000 0.000 NA   NA
 345666 345667 t0489 t0490     FALSE 0.106 169.000 0.000 NA   NA
 345668 345669 t0491 t0492     FALSE 0.095 180.000 0.000 1.000   NA
 345671 345672 t0494 t0495 pdxB usg TRUE 0.873 68.000 0.097 0.011 Y NA
 345672 345673 t0495 t0496 usg truA TRUE 0.768 0.000 0.040 1.000 N NA
 345673 345674 t0496 t0497 truA dedA FALSE 0.358 49.000 0.038 NA   NA
 345674 345675 t0497 t0498 dedA accD FALSE 0.087 150.000 0.020 NA   NA
 345675 345676 t0498 t0499 accD folC TRUE 0.708 68.000 0.383 1.000 N NA
 345676 345677 t0499 t0500 folC dedD TRUE 0.954 -10.000 0.216 NA   NA
 345677 345678 t0500 t0501 dedD cvpA FALSE 0.020 311.000 0.116 NA   NA
 345678 345679 t0501 t0502 cvpA purF TRUE 0.828 38.000 0.262 1.000   NA
 345681 345682 t0504 t0505     TRUE 0.693 91.000 0.095 1.000 Y NA
 345682 345683 t0505 t0506     TRUE 0.996 2.000 0.500 1.000 Y NA
 345683 345684 t0506 t0507     TRUE 0.929 64.000 0.500 1.000 Y NA
 345684 345685 t0507 t0508   ubiX FALSE 0.115 144.000 0.000 1.000 N NA
 345685 345686 t0508 t0509 ubiX argT FALSE 0.009 289.000 0.000 1.000 N NA
 345686 345687 t0509 t0510 argT hisJ FALSE 0.219 238.000 0.000 0.015 Y NA
 345687 345688 t0510 t0511 hisJ hisQ TRUE 0.853 183.000 0.833 0.062 Y NA
 345688 345689 t0511 t0512 hisQ hisM TRUE 0.999 -3.000 0.900 0.018 Y NA
 345689 345690 t0512 t0513 hisM hisP TRUE 0.994 11.000 0.643 1.000 Y NA
 345691 345692 t0514 t0515     FALSE 0.245 124.000 0.000 NA   NA
 345693 345694 t0516 t0517     TRUE 0.502 56.000 0.092 NA   NA
 345694 345695 t0517 t0518     TRUE 0.796 57.000 0.143 0.013   NA
 345697 345698 t0520 t0521     TRUE 0.862 81.000 0.117 0.011 Y NA
 345698 345699 t0521 t0522   ulaA TRUE 0.920 15.000 0.052 0.016   NA
 345699 345700 t0522 t0523 ulaA   TRUE 0.967 -3.000 0.167 1.000   NA
 345700 345701 t0523 t0524     TRUE 0.999 -7.000 0.742 0.001 Y NA
 345702 345703 t0525 t0526   pta FALSE 0.043 218.000 0.000 1.000   NA
 345703 345704 t0526 t0527 pta ackA TRUE 0.837 77.000 0.634 1.000   NA
 345705 345706 t0528 t0529     TRUE 0.584 83.000 0.221 NA   NA
 345706 345707 t0529 t0530     TRUE 0.970 11.000 0.375 NA   NA
 345707 345708 t0530 t0531     TRUE 0.693 76.000 0.308 1.000   NA
 345709 345710 t0532 t0533     FALSE 0.395 94.000 0.104 1.000   NA
 345711 345712 t0534 t0535 lrhA   FALSE 0.318 80.000 0.000 NA   NA
 345712 345713 t0535 t0536   nuoA FALSE 0.007 393.000 0.000 NA   NA
 345713 345714 t0536 t0537 nuoA nuoB TRUE 0.993 16.000 0.377 0.004 Y NA
 345714 345715 t0537 t0538 nuoB nuoC TRUE 0.968 87.000 0.691 0.004 Y NA
 345715 345716 t0538 t0539 nuoC nuoE TRUE 0.997 3.000 0.407 0.006 Y NA
 345716 345717 t0539 t0540 nuoE nuoF TRUE 0.996 -3.000 0.186 0.006 Y NA
 345717 345718 t0540 t0541 nuoF nuoG TRUE 0.975 25.000 0.180 0.004 Y NA
 345718 345719 t0541 t0542 nuoG nuoH TRUE 0.999 -3.000 0.664 0.006 Y NA
 345719 345720 t0542 t0543 nuoH nuoI TRUE 0.994 15.000 0.423 0.006 Y NA
 345720 345721 t0543 t0544 nuoI nuoJ TRUE 0.996 11.000 0.428 0.006 Y NA
 345721 345722 t0544 t0545 nuoJ nuoK TRUE 0.997 -3.000 0.269 0.004 Y NA
 345722 345723 t0545 t0546 nuoK nuoL TRUE 0.996 -3.000 0.211 0.006 Y NA
 345723 345724 t0546 t0547 nuoL nuoM TRUE 0.486 314.000 0.713 0.002 Y NA
 345724 345725 t0547 t0548 nuoM nuoN TRUE 0.997 7.000 0.437 0.002 Y NA
 345726 345727 t0549 t0550     FALSE 0.455 66.000 0.091 1.000   NA
 345728 345729 t0551 t0552     TRUE 0.499 49.000 0.077 NA   NA
 345729 345730 t0552 t0553   menF FALSE 0.219 101.000 0.043 NA   NA
 345730 345731 t0553 t0554 menF menD TRUE 0.842 86.000 0.281 1.000 Y NA
 345731 345732 t0554 t0555 menD yfbB TRUE 0.985 -3.000 0.355 NA   NA
 345732 345733 t0555 t0556 yfbB menB TRUE 0.942 15.000 0.280 NA   NA
 345733 345734 t0556 t0557 menB menC TRUE 0.996 0.000 0.171 0.002 Y NA
 345734 345735 t0557 t0558 menC menE TRUE 0.991 -3.000 0.283 0.002 N NA
 345735 345736 t0558 t0559 menE pmrD FALSE 0.149 98.000 0.005 NA   NA
 345737 345738 t0560 t0561     TRUE 0.992 0.000 0.613 NA   NA
 345738 345739 t0561 t0562   pqaB TRUE 0.941 -3.000 0.091 NA   NA
 345739 345740 t0562 t0563 pqaB   TRUE 0.714 -3.000 0.031 1.000 N NA
 345740 345741 t0563 t0564     TRUE 0.996 -3.000 0.447 1.000 Y NA
 345741 345742 t0564 t0565   pmrF TRUE 0.991 -3.000 0.220 NA Y NA
 345742 345743 t0565 t0566 pmrF   TRUE 0.994 3.000 0.378 NA Y NA
 345746 345747 t0569 t0570     FALSE 0.154 115.000 0.005 1.000   NA
 345747 345748 t0570 t0571     FALSE 0.026 250.000 0.000 1.000   NA
 345748 345749 t0571 t0572     TRUE 0.896 2.000 0.090 1.000 N NA
 345749 345750 t0572 t0573     FALSE 0.264 56.000 0.060 1.000 N NA
 345750 345751 t0573 t0574     TRUE 0.834 26.000 0.250 1.000 N NA
 345751 345752 t0574 t0575     TRUE 0.979 6.000 0.400 NA   NA
 345753 345754 t0576 t0577     TRUE 0.873 -10.000 0.000 NA   NA
 345754 345755 t0577 t0578   glpC FALSE 0.014 302.000 0.000 NA   NA
 345755 345756 t0578 t0579 glpC glpB TRUE 0.993 -3.000 0.547 0.057 N NA
 345756 345757 t0579 t0580 glpB glpA TRUE 0.994 -10.000 0.650 0.001 N NA
 345758 345759 t0581 t0582 glpT glpQ TRUE 0.974 5.000 0.396 1.000 N NA
 345762 345763 t0585 t0586 yfaE nrdB TRUE 0.738 0.000 0.034 1.000 N NA
 345763 345764 t0586 t0587 nrdB nrdA TRUE 0.860 113.000 0.100 0.001 Y NA
 345764 345765 t0587 t0588 nrdA ubiG FALSE 0.005 355.000 0.000 1.000 N NA
 345765 345766 t0588 t0589 ubiG   FALSE 0.044 83.000 0.004 1.000 N NA
 2200569 345767 t0590 t0591     TRUE 0.806 15.000 0.000 NA   NA
 345767 345768 t0591 t0592   gyrA FALSE 0.004 410.000 0.000 1.000 N NA
 345768 345769 t0592 t0593 gyrA tnpA FALSE 0.272 186.000 0.000 1.000 Y NA
 345769 345770 t0593 t0594 tnpA rcsC FALSE 0.045 186.000 0.000 1.000 N NA
 345771 345772 t0595 t0596 rcsB yojN TRUE 0.988 17.000 0.558 1.000 Y NA
 345772 2200570 t0596 t4642 yojN micF FALSE 0.013 303.000 0.000 NA   NA
 345773 345774 t0597 t0598 ompC yojL FALSE 0.163 115.000 0.066 1.000 N NA
 345774 345775 t0598 t0599 yojL ada FALSE 0.064 81.000 0.019 1.000 N NA
 345775 345776 t0599 t0600 ada alkB TRUE 0.829 3.000 0.068 NA N NA
 345776 345777 t0600 t0601 alkB yojI FALSE 0.216 76.000 0.076 NA N NA
 345779 345780 t0604 t0603 napF yojF TRUE 0.952 -10.000 0.209 NA   NA
 345780 345781 t0603 t0605 yojF napA TRUE 0.992 -3.000 0.875 NA N NA
 345781 345782 t0605 t0606 napA napG TRUE 0.987 7.000 0.243 0.004   NA
 345782 345783 t0606 t0607 napG napH TRUE 0.994 -13.000 0.795 0.019   NA
 345783 345784 t0607 t0608 napH napB TRUE 0.913 116.000 0.316 0.009 Y NA
 345784 345785 t0608 t0609 napB napC TRUE 0.997 10.000 0.490 0.005 Y NA
 345785 345786 t0609 t0610 napC ccmA FALSE 0.420 21.000 0.043 1.000 N NA
 345786 345787 t0610 t0611 ccmA ccmB TRUE 0.998 -3.000 0.503 0.005 Y NA
 345787 345788 t0611 t0612 ccmB ccmC TRUE 0.979 52.000 0.501 0.002 Y NA
 345788 345789 t0612 t0613 ccmC ccmD TRUE 0.987 -3.000 0.501 1.000 N NA
 345789 345790 t0613 t0614 ccmD ccmE TRUE 0.979 -3.000 0.344 1.000 N NA
 345790 345791 t0614 t0615 ccmE ccmF TRUE 0.996 -3.000 0.211 0.005 Y NA
 345791 345792 t0615 t0616 ccmF dsbE TRUE 0.999 -3.000 0.804 0.005 Y NA
 345792 345793 t0616 t0617 dsbE ccmH TRUE 0.997 -3.000 0.578 1.000 Y NA
 2200571 2200572 t0621 t0622     FALSE 0.013 309.000 0.000 NA   NA
 2200572 345797 t0622 t0623   sspH FALSE 0.106 169.000 0.000 NA   NA
 345797 2200573 t0623 t0624 sspH   FALSE 0.292 107.000 0.000 NA   NA
 400841 345798 t0625 t0626 tRNA-Pro yejM FALSE 0.335 74.000 0.000 NA   NA
 345798 345799 t0626 t0627 yejM yejL TRUE 0.492 32.000 0.040 NA   NA
 345800 345801 t0628 t0629 yejK   TRUE 0.638 28.000 0.000 NA   NA
 345802 345803 t0630 t0631 rplY yejH FALSE 0.315 125.000 0.024 0.015 N NA
 345804 345805 t0632 t0633 yejD bcr TRUE 0.758 28.000 0.182 1.000 N NA
 345805 345806 t0633 t0634 bcr   TRUE 0.924 -3.000 0.000 NA   NA
 345806 345807 t0634 t0635   yejG FALSE 0.014 296.000 0.000 NA   NA
 345808 345809 t0636 t0637 yejF yejE TRUE 0.993 2.000 0.758 1.000   NA
 345809 345810 t0637 t0638 yejE yejB TRUE 0.997 0.000 0.833 0.062   NA
 345810 345811 t0638 t0639 yejB yejA TRUE 0.994 10.000 0.848 0.062   NA
 345811 345812 t0639 t0640 yejA rtn TRUE 0.630 107.000 0.394 NA N NA
 345812 345813 t0640 t0641 rtn   FALSE 0.023 326.000 0.219 NA N NA
 345813 345814 t0641 t0642     FALSE 0.006 414.000 0.000 NA   NA
 345814 345815 t0642 t0643   yeiR TRUE 0.864 30.000 0.275 NA   NA
 345815 345816 t0643 t0644 yeiR yeiP FALSE 0.053 213.000 0.085 NA   NA
 345816 345817 t0644 t0645 yeiP   FALSE 0.137 135.000 0.034 NA   NA
 345818 345819 t0646 t0647     TRUE 0.914 2.000 0.000 NA   NA
 345821 345822 t0650 t0649 fruB fruK TRUE 0.986 0.000 0.112 1.000 Y NA
 345822 345823 t0649 t0651 fruK fruA TRUE 0.988 17.000 0.562 1.000 Y NA
 345824 345825 t0652 t0653 nfo yeiH FALSE 0.233 79.000 0.040 NA   NA
 345826 345827 t0654 t0655 yeiE lysP FALSE 0.040 190.000 0.000 1.000 N NA
 345827 345828 t0655 t0656 lysP cirA FALSE 0.005 346.000 0.000 1.000 N NA
 2200574 345829 t0657 t0658     TRUE 0.590 33.000 0.000 NA   NA
 345830 345831 t0659 t0660 sdaC   TRUE 0.981 5.000 0.400 1.000   NA
 345833 345834 t0662 t0663 folE yeiB TRUE 0.980 15.000 0.719 NA   NA
 345834 345835 t0663 t0664 yeiB galS TRUE 0.595 150.000 0.500 NA   NA
 345835 345836 t0664 t0665 galS mglB FALSE 0.002 499.000 0.000 NA N NA
 345836 2200575 t0665 t0666 mglB mglA FALSE 0.218 134.000 0.000 NA   NA
 2200575 345837 t0666 t0667 mglA mglC TRUE 0.785 16.000 0.000 NA   NA
 2200576 345838 t0668 t0669 yeiA   TRUE 0.901 -6.000 0.000 NA   NA
 345838 345839 t0669 t0670     FALSE 0.031 205.000 0.036 NA   NA
 345839 345840 t0670 t0671   sanA TRUE 0.855 -3.000 0.019 NA   NA
 345840 345841 t0671 t0672 sanA cdd FALSE 0.068 177.000 0.045 NA   NA
 345841 345842 t0672 t0673 cdd yohK FALSE 0.239 154.000 0.198 NA N NA
 345842 345843 t0673 t0674 yohK yohJ TRUE 0.984 -3.000 0.340 NA   NA
 345843 345844 t0674 t0675 yohJ   FALSE 0.157 132.000 0.031 1.000   NA
 345845 345846 t0676 t0677     TRUE 0.975 12.000 0.600 1.000 N NA
 345846 345847 t0677 t0678     TRUE 0.942 16.000 0.000 1.000 Y NA
 345847 345848 t0678 t0679     TRUE 0.939 9.000 0.000 0.026 N NA
 345848 345849 t0679 t0680     TRUE 0.822 15.000 0.120 1.000 N NA
 345849 345850 t0680 t0681   yohI FALSE 0.048 109.000 0.013 1.000 N NA
 345852 345853 t0683 t0684 yohG yohF FALSE 0.247 66.000 0.000 1.000 N NA
 345855 2200577 t0686 t0687 yohC pbpG FALSE 0.110 166.000 0.000 NA   NA
 345857 345858 t0689 t0690 bglX yehZ FALSE 0.076 182.000 0.099 1.000 N NA
 345858 345859 t0690 t0692 yehZ yehY TRUE 0.991 4.000 0.521 0.061 N NA
 345859 345860 t0692 t0691 yehY yehX TRUE 0.994 -7.000 0.489 1.000 Y NA
 345860 345861 t0691 t0693 yehX yehW TRUE 0.992 -16.000 0.542 1.000 Y NA
 345862 345863 t0694 t0695   yehV TRUE 0.877 60.000 0.667 NA   NA
 345864 345865 t0696 t0697 yehU yehT TRUE 0.999 -3.000 0.877 0.017 Y NA
 345865 345866 t0697 t0698 yehT yehS FALSE 0.420 47.000 0.051 NA   NA
 345867 345868 t0699 t0700   yehR FALSE 0.102 172.000 0.000 NA   NA
 345868 345869 t0700 t0701 yehR metG FALSE 0.027 241.000 0.000 NA   NA
 345870 345871 t0702 t0703 mrp yehE FALSE 0.018 278.000 0.000 NA   NA
 345871 345872 t0703 t0704 yehE stcA FALSE 0.017 279.000 0.000 NA   NA
 345872 345873 t0704 t0705 stcA stcB TRUE 0.914 56.000 0.333 1.000 Y NA
 345873 2200578 t0705 t0706 stcB stcC TRUE 0.818 14.000 0.000 NA   NA
 2200578 345874 t0706 t0707 stcC stcD TRUE 0.785 16.000 0.000 NA   NA
 345876 345877 t0709 t0710   thiD TRUE 0.982 -13.000 0.037 0.004 Y NA
 345877 345878 t0710 t0711 thiD   FALSE 0.317 36.000 0.049 1.000 N NA
 345879 345880 t0712 t0713     TRUE 0.988 -3.000 0.600 NA N NA
 345880 345881 t0713 t0714     TRUE 0.985 -3.000 0.364 NA   NA
 345883 345884 t0717 t0718     FALSE 0.008 365.000 0.000 NA   NA
 345884 345885 t0718 t0719     FALSE 0.249 122.000 0.000 NA   NA
 345887 345888 t0721 t0722     TRUE 0.668 25.000 0.000 NA   NA
 345888 345889 t0722 t0723     FALSE 0.289 97.000 0.000 NA   NA
 345889 345890 t0723 t0724     FALSE 0.027 240.000 0.000 NA   NA
 345890 2200580 t0724 t0725     FALSE 0.113 165.000 0.000 NA   NA
 2200580 2200581 t0725 t0726     FALSE 0.241 125.000 0.000 NA   NA
 2200581 345891 t0726 t0727     TRUE 0.827 13.000 0.000 NA   NA
 345891 345892 t0727 t0728     FALSE 0.229 131.000 0.000 NA   NA
 345892 345893 t0728 t0729     FALSE 0.345 71.000 0.000 NA   NA
 345893 345894 t0729 t0730     TRUE 0.823 -30.000 0.000 NA   NA
 345894 345895 t0730 t0731     FALSE 0.355 69.000 0.000 NA   NA
 345895 345896 t0731 t0732     FALSE 0.286 110.000 0.000 NA   NA
 345896 345897 t0732 t0733     FALSE 0.360 68.000 0.000 NA   NA
 345897 345898 t0733 t0734     FALSE 0.265 116.000 0.000 NA   NA
 345898 345899 t0734 t0735     FALSE 0.293 102.000 0.000 NA   NA
 345900 345901 t0736 t0737     TRUE 0.895 5.000 0.000 NA   NA
 345901 345902 t0737 t0738     TRUE 0.970 11.000 0.375 NA   NA
 345902 345903 t0738 t0739     TRUE 0.991 10.000 1.000 NA   NA
 345903 345904 t0739 t0740     TRUE 0.924 0.000 0.000 NA   NA
 345904 345905 t0740 t0741   baeR FALSE 0.019 269.000 0.000 NA   NA
 345905 345906 t0741 t0742 baeR baeS TRUE 0.998 -3.000 0.591 0.017 Y NA
 345906 345907 t0742 t0743 baeS yegB TRUE 0.940 0.000 0.139 1.000 N NA
 345907 345908 t0743 t0744 yegB   TRUE 0.984 -3.000 0.438 1.000 N NA
 345908 345909 t0744 t0745   yegN TRUE 0.979 1.000 0.000 NA Y NA
 345909 345910 t0745 t0746 yegN   TRUE 0.856 0.000 0.000 NA N NA
 345910 345911 t0746 t0747   yegD FALSE 0.003 441.000 0.000 1.000 N NA
 345914 345915 t0750 t0751 udk dcd TRUE 0.696 91.000 0.098 1.000 Y NA
 345915 345916 t0751 t0752 dcd asmA FALSE 0.313 39.000 0.057 NA N NA
 345918 345919 t0754 t0755 wza wzb TRUE 0.960 6.000 0.286 1.000 N NA
 345919 345920 t0755 t0756 wzb wzc TRUE 0.990 -3.000 0.667 1.000 N NA
 345920 345921 t0756 t0757 wzc wcaA TRUE 0.811 87.000 0.231 NA Y NA
 345921 345922 t0757 t0758 wcaA wcaB TRUE 0.962 3.000 0.259 NA N NA
 345922 345923 t0758 t0759 wcaB wcaC TRUE 0.970 -3.000 0.259 1.000 N NA
 345923 2200582 t0759 t0760 wcaC wcaD TRUE 0.831 -25.000 0.000 NA   NA
 2200582 345924 t0760 t0761 wcaD wcaE TRUE 0.827 13.000 0.000 NA   NA
 345924 345925 t0761 t0762 wcaE wcaF TRUE 0.803 16.000 0.077 NA   NA
 345925 345926 t0762 t0763 wcaF gmd TRUE 0.698 24.000 0.000 1.000   NA
 345926 345927 t0763 t0765 gmd fcl TRUE 0.991 3.000 0.000 0.008 Y NA
 345927 345928 t0765 t0764 fcl wcaH TRUE 0.964 -3.000 0.217 1.000 N NA
 345928 345929 t0764 t0766 wcaH wcaI TRUE 0.923 -3.000 0.108 1.000 N NA
 345929 345930 t0766 t0767 wcaI manC TRUE 0.987 -3.000 0.123 1.000 Y NA
 345930 345931 t0767 t0768 manC manB TRUE 0.832 111.000 1.000 1.000 N NA
 345931 345932 t0768 t0769 manB wcaJ TRUE 0.831 54.000 0.538 NA N NA
 345932 345933 t0769 t0770 wcaJ wzxC TRUE 0.640 102.000 0.304 NA   NA
 345933 2200583 t0770 t0771 wzxC wcaK TRUE 0.699 22.000 0.000 NA   NA
 2200583 345934 t0771 t0772 wcaK   TRUE 0.924 -3.000 0.000 NA   NA
 345934 345935 t0772 t0773     TRUE 0.962 11.000 0.292 1.000   NA
 345935 345936 t0773 t0774   galF FALSE 0.280 178.000 0.259 1.000   NA
 345936 345937 t0774 t0775 galF rfbB FALSE 0.034 377.000 0.000 1.000 Y NA
 345937 345938 t0775 t0776 rfbB rfbD TRUE 0.994 0.000 0.084 0.003 Y NA
 345938 345939 t0776 t0777 rfbD rfbA TRUE 0.906 48.000 0.053 0.003 Y NA
 345939 345940 t0777 t0778 rfbA rfbC TRUE 0.990 1.000 0.211 1.000 Y NA
 345940 345941 t0778 t0779 rfbC rfbI TRUE 0.820 6.000 0.000 1.000 N NA
 345941 345942 t0779 t0780 rfbI rfbF TRUE 0.485 16.000 0.038 1.000 N NA
 345942 345943 t0780 t0781 rfbF rfbG TRUE 0.996 5.000 0.624 1.000 Y NA
 345943 345944 t0781 t0782 rfbG rfbH TRUE 0.952 27.000 0.247 1.000 Y NA
 345944 345945 t0782 t0783 rfbH rfbS TRUE 0.903 35.000 0.018 0.026 Y NA
 345945 345946 t0783 t0784 rfbS rfbE TRUE 0.994 -3.000 0.111 0.004 Y NA
 345946 345947 t0784 t0785 rfbE rfbX TRUE 0.546 71.000 0.167 NA   NA
 345947 345948 t0785 t0786 rfbX rfbV TRUE 0.947 2.000 0.118 NA   NA
 345948 345949 t0786 t0787 rfbV rfbU FALSE 0.018 575.000 0.000 NA Y NA
 345949 345950 t0787 t0788 rfbU rfbN TRUE 0.971 1.000 0.023 NA Y NA
 345950 345951 t0788 t0789 rfbN rfbM TRUE 0.971 1.000 0.023 NA Y NA
 345951 345952 t0789 t0790 rfbM rfbK TRUE 0.772 -13.000 0.000 1.000 N NA
 345952 345953 t0790 t0791 rfbK rfbP FALSE 0.225 72.000 0.000 1.000 N NA
 345953 345954 t0791 t0792 rfbP gnd FALSE 0.013 164.000 0.005 1.000 N NA
 345954 345955 t0792 t0793 gnd ugd FALSE 0.016 237.000 0.000 1.000 N NA
 345955 345956 t0793 t0794 ugd cld TRUE 0.723 143.000 0.250 1.000 Y NA
 345957 345958 t0795 t0796 hisI hisF TRUE 0.998 -6.000 0.430 0.003 Y NA
 345958 345959 t0796 t0797 hisF hisA TRUE 0.996 -18.000 0.433 0.003 Y NA
 345959 345960 t0797 t0798 hisA hisH TRUE 0.996 0.000 0.210 0.003 Y NA
 345960 345961 t0798 t0799 hisH hisB TRUE 0.995 0.000 0.128 0.003 Y NA
 345961 345962 t0799 t0800 hisB hisC TRUE 0.998 -3.000 0.341 0.003 Y NA
 345962 345963 t0800 t0801 hisC hisD TRUE 0.997 -3.000 0.294 0.003 Y NA
 345963 345964 t0801 t0802 hisD hisG TRUE 0.892 103.000 0.171 0.003 Y NA
 345964 345965 t0802 t0803 hisG hisL FALSE 0.364 147.000 0.003 0.003   NA
 345966 345967 t0804 t0805     FALSE 0.114 46.000 0.015 1.000 N NA
 345967 345968 t0805 t0806   yeeF FALSE 0.010 280.000 0.000 1.000 N NA
 345969 2200584 t0807 t0808 sbcB sopA FALSE 0.008 367.000 0.000 NA   NA
 345970 345971 t0809 t0810 phsA phsB TRUE 0.992 15.000 0.400 0.056 Y NA
 345971 345972 t0810 t0811 phsB phsC TRUE 0.998 -3.000 0.600 0.056 Y NA
 345972 2200585 t0811 t0812 phsC yeeC FALSE 0.245 124.000 0.000 NA   NA
 2200585 345973 t0812 t0813 yeeC sbmC FALSE 0.157 151.000 0.000 NA   NA
 345973 345974 t0813 t0814 sbmC yeeA FALSE 0.324 119.000 0.096 NA   NA
 345974 345975 t0814 t0815 yeeA   FALSE 0.061 245.000 0.180 NA   NA
 345976 345977 t0816 t0817 pduX   TRUE 0.689 58.000 0.080 0.003 N NA
 345977 345978 t0817 t0818   pduV TRUE 0.946 -15.000 0.292 1.000 N NA
 345978 345979 t0818 t0819 pduV   TRUE 0.987 5.000 0.200 1.000 Y NA
 345979 345980 t0819 t0820   pduT TRUE 0.934 0.000 0.133 NA N NA
 345980 345981 t0820 t0821 pduT pduS TRUE 0.997 3.000 0.714 NA Y NA
 345981 345982 t0821 t0822 pduS pduQ TRUE 0.960 24.000 0.259 1.000 Y NA
 345982 345983 t0822 t0823 pduQ pduP TRUE 0.980 12.000 0.000 0.034 Y NA
 345983 345984 t0823 t0824 pduP pduO TRUE 0.930 -3.000 0.000 1.000   NA
 345984 2200586 t0824 t0825 pduO pduN TRUE 0.870 10.000 0.000 NA   NA
 2200586 345985 t0825 t0826 pduN pduM TRUE 0.902 4.000 0.000 NA   NA
 345985 345986 t0826 t0827 pduM pduL TRUE 0.976 -3.000 0.242 NA   NA
 345986 345987 t0827 t0828 pduL pduK TRUE 0.992 0.000 0.242 NA Y NA
 345987 345988 t0828 t0829 pduK pduJ TRUE 0.996 4.000 0.645 NA Y NA
 345988 345989 t0829 t0830 pduJ pduH TRUE 0.723 20.000 0.000 NA   NA
 345989 345990 t0830 t0831 pduH pduG TRUE 0.873 -10.000 0.000 NA   NA
 345990 345991 t0831 t0832 pduG pduE FALSE 0.280 207.000 0.500 NA   NA
 345991 345992 t0832 t0833 pduE pduD TRUE 0.993 15.000 0.759 0.001   NA
 345992 345993 t0833 t0834 pduD pduC TRUE 0.986 11.000 0.273 0.001   NA
 345993 345994 t0834 t0835 pduC pduB TRUE 0.721 19.000 0.100 1.000 N NA
 345994 345995 t0835 t0836 pduB pduA FALSE 0.209 108.000 0.083 NA N NA
 345996 345997 t0837 t0838 pduF pocR FALSE 0.092 217.000 0.231 1.000 N NA
 345997 345998 t0838 t0840 pocR cbiA FALSE 0.003 552.000 0.000 1.000 N NA
 345998 345999 t0840 t0839 cbiA cbiB TRUE 0.994 -3.000 0.124 0.008 Y NA
 345999 2200587 t0839 t0841 cbiB cbiC TRUE 0.854 11.000 0.000 NA   NA
 2200587 346000 t0841 t0842 cbiC cbiD TRUE 0.924 0.000 0.000 NA   NA
 346000 346001 t0842 t0843 cbiD cbiE TRUE 0.993 -6.000 0.126 0.008 Y NA
 346001 346002 t0843 t0844 cbiE cbiT TRUE 0.996 -10.000 0.300 0.001 Y NA
 346002 346003 t0844 t0845 cbiT cbiF TRUE 0.982 -16.000 0.056 0.008 Y NA
 346003 346004 t0845 t0846 cbiF cbiG TRUE 0.995 -19.000 0.397 0.008 Y NA
 346004 346005 t0846 t0847 cbiG cbiH TRUE 0.998 0.000 0.352 0.008 Y NA
 346005 2200588 t0847 t0848 cbiH cbiJ TRUE 0.924 -3.000 0.000 NA   NA
 2200588 2200589 t0848 t0849 cbiJ cbiK TRUE 0.909 3.000 0.000 NA   NA
 2200589 346006 t0849 t0850 cbiK cbiL TRUE 0.924 -3.000 0.000 NA   NA
 346006 2200590 t0850 t0851 cbiL cbiM TRUE 0.924 -3.000 0.000 NA   NA
 2200590 346007 t0851 t0852 cbiM cbiN TRUE 0.914 2.000 0.000 NA   NA
 346007 346008 t0852 t0853 cbiN cbiQ TRUE 0.998 -13.000 0.804 0.001 Y NA
 346008 346009 t0853 t0854 cbiQ cbiO TRUE 0.993 9.000 0.152 0.002 Y NA
 346009 346010 t0854 t0855 cbiO cbiP TRUE 0.728 -3.000 0.033 1.000 N NA
 346010 346011 t0855 t0856 cbiP cobU TRUE 0.973 -3.000 0.003 1.000 Y NA
 346011 346012 t0856 t0857 cobU cobS TRUE 0.973 -3.000 0.003 1.000 Y NA
 346012 346013 t0857 t0858 cobS cobT TRUE 0.948 27.000 0.056 0.008 Y NA
 346013 346014 t0858 t0859 cobT erfK FALSE 0.182 78.000 0.015 NA   NA
 346014 346015 t0859 t0860 erfK   FALSE 0.462 51.000 0.000 NA   NA
 346016 400772 t0862 t0863   tRNA-Asn FALSE 0.199 141.000 0.000 NA   NA
 400772 346017 t0863 t0864 tRNA-Asn   FALSE 0.006 421.000 0.000 NA   NA
 346017 346018 t0864 t0865     TRUE 0.924 -3.000 0.000 NA   NA
 346018 346019 t0865 t0866     TRUE 0.992 -6.000 0.800 NA   NA
 346021 346022 t0868 t0869 amn   FALSE 0.004 905.000 0.000 NA   NA
 346023 346024 t0870 t0871     FALSE 0.003 8206.000 0.000 NA   NA
 346024 346025 t0871 t0872     TRUE 0.870 10.000 0.000 NA   NA
 346025 400839 t0872 t0873   tRNA-Asn FALSE 0.003 4540.000 0.000 NA   NA
 346026 346027 t0874 t0875     TRUE 0.909 3.000 0.000 NA   NA
 400838 346028 t0876 t0877 tRNA-Asn   FALSE 0.292 101.000 0.000 NA   NA
 400773 346029 t0878 t0879 tRNA-Ser   FALSE 0.013 303.000 0.000 NA   NA
 346029 346030 t0879 t0880   umuD FALSE 0.237 127.000 0.000 NA   NA
 346030 346031 t0880 t0881 umuD umuC TRUE 0.849 3.000 0.000 1.000 N NA
 346031 346032 t0881 t0882 umuC cspB FALSE 0.003 446.000 0.000 1.000 N NA
 346034 346035 t0884 t0885   yedJ FALSE 0.300 80.000 0.062 NA   NA
 346035 346036 t0885 t0886 yedJ dcm FALSE 0.355 74.000 0.000 1.000   NA
 346036 346037 t0886 t0887 dcm vsr TRUE 0.978 -19.000 0.000 0.066 Y NA
 2200591 346039 t0889 t0890     TRUE 0.767 17.000 0.000 NA   NA
 346039 346040 t0890 t0891     FALSE 0.266 165.000 0.208 NA   NA
 346044 346045 t0895 t0896 rcsA fliR FALSE 0.009 282.000 0.000 1.000 N NA
 346045 346046 t0896 t0897 fliR fliQ TRUE 0.986 9.000 0.028 0.002 Y NA
 346046 346047 t0897 t0898 fliQ fliP TRUE 0.998 10.000 0.827 0.011 Y NA
 346047 346048 t0898 t0899 fliP fliO TRUE 0.991 0.000 0.203 1.000 Y NA
 346048 346049 t0899 t0900 fliO fliN TRUE 0.996 0.000 0.443 1.000 Y NA
 346049 346050 t0900 t0901 fliN fliM TRUE 0.996 -3.000 0.137 0.001 Y NA
 346050 346051 t0901 t0902 fliM fliL TRUE 0.999 5.000 0.957 0.001 Y NA
 346051 346052 t0902 t0903 fliL fliK TRUE 0.720 105.000 0.119 1.000 Y NA
 346052 346053 t0903 t0904 fliK fliJ TRUE 0.997 -3.000 0.317 0.006 Y NA
 346053 346054 t0904 t0905 fliJ fliI TRUE 0.963 22.000 0.073 0.007 Y NA
 346054 346055 t0905 t0906 fliI fliH TRUE 0.993 0.000 0.000 0.004 Y NA
 346055 346056 t0906 t0907 fliH fliG TRUE 0.985 -7.000 0.005 0.004 Y NA
 346056 346057 t0907 t0908 fliG fliF TRUE 0.995 -7.000 0.220 0.006 Y NA
 346059 346060 t0910 t0911   yedF FALSE 0.014 298.000 0.000 NA   NA
 346060 346061 t0911 t0912 yedF yedE TRUE 0.994 -3.000 0.844 NA   NA
 346063 346064 t0914 t0915 amyA fliT TRUE 0.474 72.000 0.115 1.000   NA
 346064 346065 t0915 t0916 fliT fliS TRUE 0.983 0.000 0.324 1.000   NA
 346065 346066 t0916 t0917 fliS fliD TRUE 0.992 15.000 0.284 0.002 Y NA
 346067 2200593 t0918 t0919 fliC   FALSE 0.321 79.000 0.000 NA   NA
 2200593 346068 t0919 t0920   fliA FALSE 0.058 197.000 0.000 NA   NA
 346068 346069 t0920 t0921 fliA fliZ TRUE 0.529 59.000 0.108 1.000   NA
 346069 346070 t0921 t0922 fliZ fliY TRUE 0.469 147.000 0.280 1.000   NA
 346070 346071 t0922 t0923 fliY   TRUE 0.776 154.000 0.469 1.000 Y NA
 346071 346072 t0923 t0924   yecS TRUE 0.904 21.000 0.050 1.000 Y NA
 346072 346073 t0924 t0925 yecS   TRUE 0.989 -3.000 0.150 1.000 Y NA
 346073 346074 t0925 t0926   sdiA FALSE 0.019 233.000 0.071 1.000 N NA
 346075 346076 t0927 t0928 yecF   TRUE 0.924 -3.000 0.000 NA   NA
 346077 346078 t0929 t0930 sirA uvrC TRUE 0.968 -3.000 0.086 0.026 N NA
 346078 346079 t0930 t0931 uvrC pgsA TRUE 0.631 57.000 0.227 1.000 N NA
 346079 400774 t0931 t0932 pgsA tRNA-Gly FALSE 0.155 152.000 0.000 NA   NA
 400774 400775 t0932 t0933 tRNA-Gly tRNA-Cys FALSE 0.447 53.000 0.000 NA   NA
 400775 400776 t0933 t0934 tRNA-Cys tRNA-Leu TRUE 0.839 12.000 0.000 NA   NA
 400776 346080 t0934 t0935 tRNA-Leu   FALSE 0.024 250.000 0.000 NA   NA
 346080 346081 t0935 t0936     TRUE 0.891 -7.000 0.000 NA   NA
 346081 346082 t0936 t0937     FALSE 0.038 220.000 0.000 NA   NA
 346082 346083 t0937 t0938     FALSE 0.044 213.000 0.000 NA   NA
 346083 346084 t0938 t0939     TRUE 0.753 18.000 0.000 NA   NA
 346084 346085 t0939 t0940   yecA FALSE 0.028 239.000 0.000 NA   NA
 346088 346089 t0943 t0944 ftnA   FALSE 0.015 240.000 0.029 NA   NA
 346089 346090 t0944 t0945   yecI FALSE 0.010 331.000 0.000 NA   NA
 346091 2200594 t0946 t0947   araH FALSE 0.033 229.000 0.000 NA   NA
 2200594 346092 t0947 t0948 araH otsB FALSE 0.122 163.000 0.000 NA   NA
 346092 346093 t0948 t0949 otsB otsA TRUE 0.985 -25.000 0.068 0.001 Y NA
 346094 346095 t0950 t0951 yecG   TRUE 0.924 -3.000 0.000 NA   NA
 346096 346097 t0952 t0953 flhD flhC TRUE 0.983 -3.000 0.000 0.001   NA
 346097 346098 t0953 t0954 flhC motA TRUE 0.662 128.000 0.408 1.000   NA
 346098 346099 t0954 t0955 motA motB TRUE 0.996 -3.000 0.429 1.000 Y NA
 346099 346100 t0955 t0956 motB cheA TRUE 0.997 5.000 0.913 1.000 Y NA
 346100 346101 t0956 t0957 cheA cheW TRUE 0.991 21.000 0.447 0.005 Y NA
 346101 346102 t0957 t0958 cheW tar FALSE 0.214 237.000 0.043 0.005 Y NA
 346102 346103 t0958 t0959 tar cheR FALSE 0.335 161.000 0.037 1.000 Y NA
 346103 346104 t0959 t0960 cheR cheB TRUE 0.984 -3.000 0.087 1.000 Y NA
 346104 346105 t0960 t0961 cheB cheY TRUE 0.992 18.000 0.467 0.014 Y NA
 346105 346106 t0961 t0962 cheY cheZ TRUE 0.963 11.000 0.000 1.000 Y NA
 346106 346107 t0962 t0963 cheZ flhB FALSE 0.231 194.000 0.000 1.000 Y NA
 346107 346108 t0963 t0964 flhB flhA TRUE 0.995 -7.000 0.287 0.010 Y NA
 346108 346109 t0964 t0965 flhA flhE TRUE 0.989 0.000 0.158 0.002   NA
 346109 346110 t0965 t0966 flhE   FALSE 0.030 240.000 0.000 1.000   NA
 2200595 346111 t0967 t0968   argS FALSE 0.072 189.000 0.000 NA   NA
 346112 346113 t0969 t0970   cutC TRUE 0.709 20.000 0.057 1.000   NA
 346114 346115 t0971 t0972     TRUE 0.982 -3.000 0.315 NA   NA
 346115 346116 t0972 t0973     TRUE 0.591 41.000 0.089 NA   NA
 346116 346117 t0973 t0974   yecE TRUE 0.592 53.000 0.126 NA   NA
 346117 346118 t0974 t0975 yecE yecD TRUE 0.940 -3.000 0.089 NA   NA
 346119 346120 t0976 t0977 aspS ntpA FALSE 0.134 103.000 0.050 1.000 N NA
 346120 346121 t0977 t0978 ntpA yebC TRUE 0.492 30.000 0.035 NA   NA
 346121 346122 t0978 t0979 yebC ruvC TRUE 0.832 37.000 0.277 NA   NA
 346124 346125 t0981 t0982   ruvA FALSE 0.008 360.000 0.000 NA   NA
 346125 346126 t0982 t0983 ruvA ruvB TRUE 0.998 9.000 0.549 0.002 Y NA
 346127 346128 t0984 t0985 yebI znuC TRUE 0.999 -3.000 0.755 0.094 Y NA
 346129 346130 t0986 t0987 znuA yebA TRUE 0.820 16.000 0.131 1.000 N NA
 346130 346131 t0987 t0988 yebA msbB TRUE 0.819 117.000 0.299 1.000 Y NA
 346132 346133 t0989 t0990 pykA hexR FALSE 0.160 124.000 0.071 1.000 N NA
 346134 346135 t0991 t0992 zwf edd FALSE 0.101 235.000 0.041 1.000 Y NA
 346135 346136 t0992 t0993 edd   TRUE 0.966 38.000 0.523 1.000 Y NA
 346138 346139 t0995 t0996 yebG yebF FALSE 0.360 68.000 0.000 NA   NA
 346139 346140 t0996 t0997 yebF yebE FALSE 0.290 94.000 0.000 NA   NA
 346140 346141 t0997 t0998 yebE opdB FALSE 0.056 214.000 0.092 NA   NA
 346142 346143 t0999 t1000 exoX   TRUE 0.960 24.000 0.667 1.000   NA
 346143 346144 t1000 t1001   holE TRUE 0.576 108.000 0.222 1.000   NA
 346145 346146 t1002 t1003     TRUE 0.991 1.000 0.613 1.000   NA
 346146 346147 t1003 t1004     TRUE 0.974 17.000 0.704 NA   NA
 346147 346148 t1004 t1005     FALSE 0.391 61.000 0.000 NA   NA
 2200596 2200597 t1006 t1007     FALSE 0.318 80.000 0.000 NA   NA
 2200598 346149 t1008 t1009     TRUE 0.699 22.000 0.000 NA   NA
 346150 346151 t1010 t1011     FALSE 0.208 137.000 0.000 NA   NA
 346153 346154 t1013 t1014     FALSE 0.055 200.000 0.000 NA   NA
 346154 346155 t1014 t1015     TRUE 0.870 10.000 0.000 NA   NA
 346155 346156 t1015 t1016     FALSE 0.223 133.000 0.000 NA   NA
 346157 346158 t1018 t1019     FALSE 0.223 133.000 0.000 NA   NA
 346160 346161 t1021 t1022     FALSE 0.011 329.000 0.000 NA   NA
 2200600 346162 t1023 t1024 sopE   FALSE 0.016 285.000 0.000 NA   NA
 346162 346163 t1024 t1025   pphA FALSE 0.035 224.000 0.000 NA   NA
 346164 346165 t1026 t1027     TRUE 0.671 111.000 0.353 NA   NA
 346165 346166 t1027 t1028     FALSE 0.385 115.000 0.121 NA   NA
 346166 346167 t1028 t1029     TRUE 0.749 78.000 0.420 NA   NA
 346167 346168 t1029 t1030     TRUE 0.984 -37.000 0.840 NA   NA
 346169 346170 t1031 t1032   proP TRUE 0.655 98.000 0.081 NA Y NA
 346170 346171 t1032 t1033 proP prc TRUE 0.887 20.000 0.304 NA N NA
 346171 346172 t1033 t1034 prc htpX FALSE 0.100 193.000 0.042 0.023 N NA
 346175 346176 t1038 t1039     TRUE 0.800 71.000 0.500 NA   NA
 346176 346177 t1039 t1040     FALSE 0.004 649.000 0.000 NA   NA
 346177 346178 t1040 t1041   cspC TRUE 0.934 13.000 0.214 NA   NA
 346178 346179 t1041 t1042 cspC ftsI FALSE 0.022 220.000 0.000 1.000 N NA
 346179 346180 t1042 t1043 ftsI rrmA FALSE 0.316 66.000 0.045 1.000   NA
 346181 346182 t1044 t1045     FALSE 0.009 356.000 0.000 NA   NA
 346182 346183 t1045 t1046   manZ TRUE 0.893 59.000 0.755 NA   NA
 346183 346184 t1046 t1047 manZ manY TRUE 0.999 4.000 0.939 0.012 Y NA
 346184 346185 t1047 t1048 manY manX TRUE 0.911 53.000 0.106 0.012 Y NA
 346187 346188 t1050 t1051   sdaA TRUE 0.517 138.000 0.389 NA N NA
 346188 346189 t1051 t1052 sdaA   FALSE 0.089 264.000 0.409 1.000 N NA
 346189 346190 t1052 t1053   pabB TRUE 0.908 4.000 0.116 1.000 N NA
 346193 346194 t1056 t1057     FALSE 0.335 58.000 0.082 1.000 N NA
 346194 346195 t1057 t1058     FALSE 0.084 71.000 0.024 1.000 N NA
 346195 346196 t1058 t1059   fadD FALSE 0.080 205.000 0.169 1.000 N NA
 346196 346197 t1059 t1060 fadD rnd FALSE 0.351 73.000 0.115 1.000 N NA
 346198 346199 t1061 t1062 minE minD TRUE 0.996 4.000 0.618 NA Y NA
 346199 346200 t1062 t1063 minD minC TRUE 0.977 24.000 0.466 1.000 Y NA
 346201 346202 t1064 t1065     FALSE 0.424 50.000 0.056 NA   NA
 346202 346203 t1065 t1066     FALSE 0.342 93.000 0.088 NA   NA
 346203 346204 t1066 t1067     FALSE 0.009 352.000 0.000 NA   NA
 346204 346205 t1067 t1068     FALSE 0.066 192.000 0.000 NA   NA
 346206 346207 t1069 t1070   dsbB FALSE 0.071 108.000 0.036 NA N NA
 346207 346208 t1070 t1071 dsbB nhaB TRUE 0.693 142.000 0.723 1.000 N NA
 346211 346212 t1074 t1075 dadA dadX TRUE 0.880 14.000 0.168 1.000 N NA
 346213 346214 t1076 t1077     FALSE 0.259 97.000 0.103 NA N NA
 2200602 346218 t1081 t1082 treA gdhA FALSE 0.043 214.000 0.000 NA   NA
 346218 346219 t1082 t1083 gdhA appB FALSE 0.002 603.000 0.000 1.000 N NA
 346219 2200603 t1083 t1084 appB appC TRUE 0.839 12.000 0.000 NA   NA
 2200603 346220 t1084 t1085 appC hyaF FALSE 0.332 75.000 0.000 NA   NA
 346220 346221 t1085 t1086 hyaF hyaE TRUE 0.931 -3.000 0.077 NA   NA
 346221 346222 t1086 t1087 hyaE hyaD TRUE 0.905 -10.000 0.096 NA   NA
 346222 346223 t1087 t1088 hyaD hyaC TRUE 0.990 -3.000 0.177 1.000 Y NA
 346223 346224 t1088 t1089 hyaC   TRUE 0.987 19.000 0.355 0.054 Y NA
 346224 2200604 t1089 t1090   hyaA TRUE 0.924 -3.000 0.000 NA   NA
 346226 346227 t1092 t1093   pth TRUE 0.751 117.000 0.184 1.000 Y NA
 346229 346230 t1095 t1096   prsA FALSE 0.056 125.000 0.027 1.000 N NA
 346230 346231 t1096 t1097 prsA ipk FALSE 0.003 266.000 0.018 1.000 N NA
 346231 346232 t1097 t1098 ipk hemM TRUE 0.675 -3.000 0.024 1.000 N NA
 346233 346234 t1099 t1100 hemA prfA TRUE 0.817 41.000 0.171 0.049 N NA
 346234 346235 t1100 t1101 prfA hemK TRUE 0.996 0.000 0.229 0.049 Y NA
 346235 346236 t1101 t1102 hemK   TRUE 0.950 -3.000 0.109 NA   NA
 346236 346237 t1102 t1103     TRUE 0.961 4.000 0.195 NA   NA
 346237 346238 t1103 t1104   kdsA TRUE 0.633 38.000 0.089 1.000   NA
 346238 346239 t1104 t1105 kdsA tnpA FALSE 0.036 194.000 0.000 1.000 N NA
 346239 346240 t1105 t1106 tnpA   FALSE 0.005 505.000 0.000 NA   NA
 346240 346241 t1106 t1107     FALSE 0.003 1041.000 0.000 NA   NA
 346241 346242 t1107 t1108     TRUE 0.923 17.000 0.000 0.007   NA
 346242 346243 t1108 t1109     FALSE 0.066 192.000 0.000 NA   NA
 346244 346245 t1110 t1111   cdtB FALSE 0.338 73.000 0.000 NA   NA
 346246 346247 t1113 t1114 msgA envE FALSE 0.067 191.000 0.000 NA   NA
 346247 346248 t1114 t1115 envE cspH FALSE 0.006 418.000 0.000 NA   NA
 346248 346249 t1115 t1116 cspH pagD FALSE 0.227 132.000 0.000 NA   NA
 346250 346251 t1117 t1118     FALSE 0.306 86.000 0.000 NA   NA
 346251 346252 t1118 t1119   pagC FALSE 0.008 378.000 0.000 NA   NA
 400777 346254 t1121 t1122 tRNA-Arg   FALSE 0.023 252.000 0.000 NA   NA
 346256 346257 t1124 t1125     FALSE 0.434 55.000 0.000 NA   NA
 346257 346258 t1125 t1126     FALSE 0.330 76.000 0.000 NA   NA
 346258 346259 t1126 t1127     FALSE 0.055 200.000 0.000 NA   NA
 346259 346260 t1127 t1128     FALSE 0.061 195.000 0.000 NA   NA
 346263 346264 t1131 t1132     FALSE 0.167 149.000 0.000 NA   NA
 346265 346266 t1133 t1135     TRUE 0.998 -3.000 0.500 0.058 Y NA
 346266 346267 t1135 t1134     TRUE 0.983 -10.000 0.000 0.058 Y NA
 346267 346268 t1134 t1136     TRUE 0.909 -6.000 0.000 1.000   NA
 346268 346269 t1136 t1137     TRUE 0.967 -6.000 0.000 0.016   NA
 346271 400778 t1139 t1140   tRNA-Arg TRUE 0.879 9.000 0.000 NA   NA
 400778 346272 t1140 t1141 tRNA-Arg   FALSE 0.288 109.000 0.000 NA   NA
 346272 346273 t1141 t1142   aadA FALSE 0.307 109.000 0.000 1.000   NA
 346273 346274 t1142 t1143 aadA   FALSE 0.198 145.000 0.000 1.000   NA
 346274 346275 t1143 t1144     TRUE 0.601 69.000 0.000 0.065   NA
 346276 346277 t1145 t1146     FALSE 0.321 79.000 0.000 NA   NA
 346278 346279 t1147 t1148 aroQ   FALSE 0.222 196.000 0.000 1.000 Y NA
 346279 346280 t1148 t1149     FALSE 0.052 173.000 0.000 NA N NA
 346280 346281 t1149 t1150     TRUE 0.909 3.000 0.000 NA   NA
 346281 346282 t1150 t1151     FALSE 0.035 224.000 0.000 NA   NA
 346282 346283 t1151 t1152     FALSE 0.252 121.000 0.000 NA   NA
 346283 346284 t1152 t1153     TRUE 0.883 8.000 0.000 NA   NA
 346284 346285 t1153 t1154   tnpA FALSE 0.067 195.000 0.000 1.000   NA
 346285 346286 t1154 t1155 tnpA   FALSE 0.005 491.000 0.000 NA   NA
 346286 346287 t1155 t1156     FALSE 0.320 69.000 0.057 NA   NA
 346288 346289 t1157 t1158     FALSE 0.131 119.000 0.007 NA   NA
 346291 346292 t1160 t1161     FALSE 0.006 304.000 0.018 NA   NA
 346292 2200606 t1161 t1162     TRUE 0.528 41.000 0.000 NA   NA
 2200606 346293 t1162 t1163     FALSE 0.004 650.000 0.000 NA   NA
 346293 346294 t1163 t1164     TRUE 0.788 123.000 0.683 NA   NA
 346295 2200607 t1165 t1166     FALSE 0.015 290.000 0.000 NA   NA
 2200607 346296 t1166 t1167     FALSE 0.290 98.000 0.000 NA   NA
 2200608 346297 t1168 t1169 yeaD gapA FALSE 0.011 329.000 0.000 NA   NA
 346298 346299 t1170 t1171     TRUE 0.763 42.000 0.216 NA   NA
 346300 346301 t1172 t1173 pncA ansA FALSE 0.333 27.000 0.040 1.000 N NA
 346301 346302 t1173 t1174 ansA sppA FALSE 0.296 96.000 0.113 1.000 N NA
 346303 346304 t1175 t1176   selD FALSE 0.073 118.000 0.033 1.000 N NA
 346304 346305 t1176 t1177 selD topB TRUE 0.705 5.000 0.041 1.000 N NA
 346308 346309 t1180 t1181   xthA FALSE 0.181 73.000 0.056 1.000 N NA
 346310 2200609 t1182 t1183 astC astA TRUE 0.881 -9.000 0.000 NA   NA
 2200609 346311 t1183 t1184 astA astD TRUE 0.924 -3.000 0.000 NA   NA
 346311 346312 t1184 t1185 astD astB FALSE 0.200 189.000 0.306 1.000 N NA
 346312 346313 t1185 t1186 astB astE TRUE 0.982 -7.000 0.126 1.000 Y NA
 346313 346314 t1186 t1187 astE   FALSE 0.005 336.000 0.000 NA N NA
 346315 346316 t1188 t1189   nadE FALSE 0.045 94.000 0.010 1.000 N NA
 346317 346318 t1190 t1191 osmE celA FALSE 0.015 301.000 0.000 1.000   NA
 346318 346319 t1191 t1192 celA celB TRUE 0.886 83.000 0.167 0.010 Y NA
 346319 346320 t1192 t1193 celB celC TRUE 0.985 51.000 0.833 0.010 Y NA
 346320 346321 t1193 t1194 celC celD TRUE 0.982 11.000 0.727 1.000 N NA
 346321 346322 t1194 t1195 celD celF TRUE 0.711 125.000 0.625 1.000 N NA
 346322 346323 t1195 t1196 celF   TRUE 0.985 13.000 0.429 0.019   NA
 346323 346324 t1196 t1197   tnpA FALSE 0.091 182.000 0.000 1.000   NA
 346327 346328 t1200 t1201     FALSE 0.278 137.000 0.102 NA   NA
 346328 346329 t1201 t1202     FALSE 0.162 150.000 0.068 NA   NA
 346331 346332 t1204 t1205     FALSE 0.162 107.000 0.016 NA   NA
 346332 346333 t1205 t1206   pfkB FALSE 0.175 97.000 0.025 NA   NA
 346336 2200610 t1209 t1210     TRUE 0.924 -3.000 0.000 NA   NA
 2200610 346337 t1210 t1211     FALSE 0.100 173.000 0.000 NA   NA
 346339 346340 t1213 t1214 thrS infC TRUE 0.987 4.000 0.186 1.000 Y NA
 346340 346341 t1214 t1215 infC rpmI TRUE 0.921 96.000 0.652 1.000 Y NA
 346341 346342 t1215 t1216 rpmI rplT TRUE 0.986 51.000 0.928 0.014 Y NA
 346342 346343 t1216 t1217 rplT pheM FALSE 0.252 121.000 0.000 NA   NA
 346343 346344 t1217 t1218 pheM pheS FALSE 0.208 137.000 0.000 NA   NA
 346344 346345 t1218 t1219 pheS pheT TRUE 0.996 16.000 0.574 0.001 Y NA
 346345 346346 t1219 t1220 pheT himA TRUE 0.946 5.000 0.208 1.000 N NA
 346346 346347 t1220 t1221 himA btuC FALSE 0.009 203.000 0.023 1.000 N NA
 346347 346348 t1221 t1222 btuC btuE FALSE 0.233 92.000 0.084 1.000 N NA
 346348 346349 t1222 t1223 btuE btuD TRUE 0.872 0.000 0.000 1.000 N NA
 346349 346350 t1223 t1224 btuD nlpC FALSE 0.192 77.000 0.000 NA N NA
 346350 346351 t1224 t1225 nlpC   FALSE 0.006 314.000 0.000 NA N NA
 346351 346352 t1225 t1226     FALSE 0.261 62.000 0.031 NA   NA
 346353 346354 t1227 t1228   aroH FALSE 0.051 157.000 0.054 NA N NA
 346354 346355 t1228 t1229 aroH   FALSE 0.279 156.000 0.165 1.000   NA
 346357 346358 t1231 t1232 aroD   FALSE 0.009 353.000 0.000 NA   NA
 346359 346360 t1233 t1234     TRUE 0.824 15.000 0.129 NA N NA
 346360 346361 t1234 t1235     FALSE 0.272 60.000 0.032 NA   NA
 346363 346364 t1237 t1238     TRUE 0.826 9.000 0.041 NA   NA
 346364 346365 t1238 t1239     TRUE 0.985 17.000 0.466 1.000 Y NA
 346365 346366 t1239 t1240     TRUE 0.990 -25.000 0.482 1.000 Y NA
 346366 346367 t1240 t1241     TRUE 0.958 -3.000 0.193 1.000 N NA
 346367 346368 t1241 t1242     TRUE 0.924 13.000 0.183 NA   NA
 346368 2200611 t1242 t1243   ynhG FALSE 0.145 155.000 0.000 NA   NA
 346369 346370 t1244 t1245 lppB lppA TRUE 0.792 83.000 0.032 0.007 Y NA
 346370 346371 t1245 t1246 lppA pykF FALSE 0.007 311.000 0.000 1.000 N NA
 346371 346372 t1246 t1247 pykF   FALSE 0.004 402.000 0.000 1.000 N NA
 346372 2200612 t1247 t1248     TRUE 0.478 48.000 0.000 NA   NA
 2200612 346373 t1248 t1249     FALSE 0.404 59.000 0.000 NA   NA
 346373 2200613 t1249 t1250     TRUE 0.839 12.000 0.000 NA   NA
 2200613 346374 t1250 t1251   ttrA FALSE 0.011 323.000 0.000 NA   NA
 346374 346375 t1251 t1252 ttrA ttrC TRUE 0.891 -7.000 0.000 NA   NA
 346375 346376 t1252 t1253 ttrC ttrB TRUE 0.979 1.000 0.000 NA Y NA
 346377 346378 t1254 t1255 ttrS ttrR TRUE 0.992 -25.000 0.600 1.000 Y NA
 346378 346379 t1255 t1256 ttrR ydhZ FALSE 0.290 98.000 0.000 NA   NA
 346380 346381 t1257 t1258     FALSE 0.102 172.000 0.000 NA   NA
 346381 346382 t1258 t1259   ssrB FALSE 0.454 179.000 0.000 0.064 Y NA
 346382 346383 t1259 t1260 ssrB ssrA TRUE 0.940 31.000 0.000 0.014 Y NA
 346384 346385 t1261 t1262 spiC spiA TRUE 0.955 2.000 0.143 NA   NA
 346385 346386 t1262 t1263 spiA ssaD TRUE 0.952 -19.000 0.268 NA   NA
 346386 346387 t1263 t1264 ssaD ssaE TRUE 0.939 8.000 0.146 NA   NA
 346387 346388 t1264 t1265 ssaE sseA FALSE 0.162 203.000 0.250 NA   NA
 346388 346389 t1265 t1266 sseA sseB TRUE 0.988 7.000 0.667 NA   NA
 346389 346390 t1266 t1267 sseB sscA TRUE 0.924 -3.000 0.000 NA   NA
 346390 346391 t1267 t1268 sscA sseC TRUE 0.991 3.000 0.632 1.000   NA
 346391 346392 t1268 t1269 sseC sseD TRUE 0.914 16.000 0.211 NA   NA
 346392 346393 t1269 t1270 sseD sseE TRUE 0.909 3.000 0.000 NA   NA
 346393 346394 t1270 t1271 sseE sscB FALSE 0.455 52.000 0.000 NA   NA
 346394 346395 t1271 t1272 sscB sseF TRUE 0.785 16.000 0.000 NA   NA
 346395 346396 t1272 t1273 sseF sseG TRUE 0.924 -3.000 0.000 NA   NA
 346396 346397 t1273 t1274 sseG ssaG FALSE 0.290 94.000 0.000 NA   NA
 346397 346398 t1274 t1275 ssaG ssaH TRUE 0.921 41.000 0.650 NA   NA
 346398 346399 t1275 t1276 ssaH ssaI TRUE 0.969 12.000 0.407 NA   NA
 346399 346400 t1276 t1277 ssaI ssaJ TRUE 0.994 -3.000 0.407 0.010   NA
 346400 346401 t1277 t1278 ssaJ   TRUE 0.975 18.000 0.786 NA   NA
 346401 346402 t1278 t1279     TRUE 0.990 -3.000 0.538 NA   NA
 346402 346403 t1279 t1280   ssaL TRUE 0.979 -10.000 0.462 NA   NA
 346403 346404 t1280 t1281 ssaL ssaM TRUE 0.791 58.000 0.364 NA   NA
 346404 346405 t1281 t1282 ssaM ssaV TRUE 0.983 -15.000 0.636 NA   NA
 346405 346406 t1282 t1283 ssaV ssaN TRUE 0.998 -10.000 0.647 0.008 Y NA
 346406 346407 t1283 t1284 ssaN ssaO TRUE 0.909 3.000 0.000 NA   NA
 346407 346408 t1284 t1285 ssaO ssaP TRUE 0.840 -19.000 0.000 NA   NA
 346408 346409 t1285 t1286 ssaP ssaQ TRUE 0.917 -19.000 0.154 NA   NA
 346409 346410 t1286 t1287 ssaQ yscR TRUE 0.805 68.000 0.154 1.000 Y NA
 346410 346411 t1287 t1288 yscR ssaS TRUE 0.993 -3.000 0.091 0.010 Y NA
 346411 346412 t1288 t1289 ssaS ssaT TRUE 0.998 1.000 0.516 0.092 Y NA
 346412 346413 t1289 t1290 ssaT ssaU TRUE 0.997 -3.000 0.406 0.092 Y NA
 400837 400836 t1291 t1292 tRNA-Val tRNA-Val TRUE 0.854 11.000 0.000 NA   NA
 400836 346414 t1292 t1293 tRNA-Val ydhE FALSE 0.155 152.000 0.000 NA   NA
 346416 346417 t1295 t1296 cfa ydhC FALSE 0.009 289.000 0.000 1.000 N NA
 346419 346420 t1298 t1299 purR sodB FALSE 0.003 468.000 0.000 1.000 N NA
 346420 346421 t1299 t1300 sodB   FALSE 0.024 127.000 0.015 NA N NA
 346423 346424 t1302 t1303 rnt gloA FALSE 0.346 101.000 0.136 1.000 N NA
 346424 346425 t1303 t1304 gloA nemA FALSE 0.194 69.000 0.057 1.000 N NA
 346425 346426 t1304 t1305 nemA   TRUE 0.733 59.000 0.362 1.000 N NA
 346427 346428 t1306 t1307     FALSE 0.376 51.000 0.045 NA   NA
 346428 346429 t1307 t1308   sodC FALSE 0.232 80.000 0.033 1.000   NA
 346430 346431 t1309 t1310     TRUE 0.944 0.000 0.088 1.000   NA
 346431 346432 t1310 t1311     TRUE 0.983 -6.000 0.412 NA   NA
 346435 346436 t1314 t1315   ydhA FALSE 0.200 88.000 0.034 NA   NA
 346436 346437 t1315 t1316 ydhA pdxH FALSE 0.140 134.000 0.034 NA   NA
 346437 346438 t1316 t1317 pdxH tyrS FALSE 0.112 127.000 0.054 1.000 N NA
 346438 346439 t1317 t1318 tyrS pdxY FALSE 0.157 60.000 0.041 1.000 N NA
 346440 346441 t1319 t1320 gst   TRUE 0.611 105.000 0.344 1.000 N NA
 346441 346442 t1320 t1321   nth FALSE 0.002 601.000 0.000 1.000 N NA
 346442 346443 t1321 t1322 nth ydgQ TRUE 0.924 0.000 0.109 1.000 N NA
 346443 346444 t1322 t1323 ydgQ   TRUE 0.999 3.000 0.908 0.052 Y NA
 346444 346445 t1323 t1324     TRUE 0.999 4.000 0.924 0.052 Y NA
 346445 346446 t1324 t1325     TRUE 0.999 1.000 0.814 0.052 Y NA
 346446 346447 t1325 t1326     TRUE 0.997 -7.000 0.537 0.019 Y NA
 346447 346448 t1326 t1327     TRUE 0.998 0.000 0.564 0.052 Y NA
 346448 346449 t1327 t1328     TRUE 0.497 77.000 0.148 NA   NA
 346449 346450 t1328 t1329     FALSE 0.417 89.000 0.120 NA   NA
 346452 2200614 t1331 t1332 add malY FALSE 0.034 226.000 0.000 NA   NA
 2200614 2200615 t1332 t1333 malY malX TRUE 0.870 10.000 0.000 NA   NA
 2200615 346453 t1333 t1334 malX   FALSE 0.106 169.000 0.000 NA   NA
 346453 346454 t1334 t1335   manA TRUE 0.839 103.000 0.778 NA   NA
 346455 346456 t1336 t1337 fumA fumC TRUE 0.618 168.000 0.000 0.001 Y NA
 346457 346458 t1338 t1339 tus rstB TRUE 0.588 76.000 0.200 1.000   NA
 346458 346459 t1339 t1340 rstB   FALSE 0.309 108.000 0.000 1.000   NA
 346459 346460 t1340 t1341     FALSE 0.164 153.000 0.000 1.000   NA
 346464 346465 t1345 t1346     FALSE 0.010 281.000 0.000 1.000 N NA
 346467 346468 t1351 t1352     TRUE 0.969 3.000 0.222 NA   NA
 346468 346469 t1352 t1353     TRUE 0.891 -7.000 0.000 NA   NA
 346469 346470 t1353 t1354     TRUE 0.881 -9.000 0.000 NA   NA
 346470 346471 t1354 t1355     TRUE 0.536 57.000 0.111 NA   NA
 346471 346472 t1355 t1356     TRUE 0.995 -3.000 1.000 NA   NA
 346472 346473 t1356 t1357     TRUE 0.931 -12.000 0.154 NA   NA
 346473 346474 t1357 t1358     TRUE 0.975 -3.000 0.231 NA   NA
 346474 346475 t1358 t1359     TRUE 0.991 0.000 0.600 NA   NA
 346475 346476 t1359 t1360     TRUE 0.536 176.000 0.667 NA   NA
 346476 346477 t1360 t1361     TRUE 0.756 98.000 0.500 NA   NA
 346477 346478 t1361 t1362     TRUE 0.935 3.000 0.100 NA   NA
 346478 346479 t1362 t1363     TRUE 0.965 0.000 0.167 NA   NA
 346479 346480 t1363 t1364     TRUE 0.990 -10.000 0.833 NA   NA
 346480 346481 t1364 t1365     TRUE 0.983 -3.000 0.333 NA   NA
 346481 346482 t1365 t1366     TRUE 0.900 0.000 0.049 NA   NA
 346482 346483 t1366 t1367     TRUE 0.970 2.000 0.220 NA   NA
 346483 346484 t1367 t1368     TRUE 0.870 10.000 0.000 NA   NA
 346484 346485 t1368 t1369     TRUE 0.806 15.000 0.000 NA   NA
 346485 346486 t1369 t1370     FALSE 0.042 215.000 0.000 NA   NA
 346486 346487 t1370 t1371     TRUE 0.993 3.000 0.818 NA   NA
 346487 346488 t1371 t1372     TRUE 0.840 -19.000 0.000 NA   NA
 346488 346489 t1372 t1373     TRUE 0.924 0.000 0.000 NA   NA
 346489 346490 t1373 t1374     TRUE 0.924 -3.000 0.000 NA   NA
 346490 346491 t1374 t1375     TRUE 0.989 0.000 0.500 NA   NA
 346491 346492 t1375 t1376     TRUE 0.994 0.000 0.800 NA   NA
 346492 346493 t1376 t1377     TRUE 0.986 -3.000 0.400 NA   NA
 346493 346495 t1377 t1378     TRUE 0.846 -16.000 0.000 NA   NA
 346494 346496 t1379 t1380     TRUE 0.987 3.000 0.500 NA   NA
 346495 346494 t1378 t1379     TRUE 0.806 -230.000 0.000 NA   NA
 346496 346497 t1380 t1381     FALSE 0.026 244.000 0.000 NA   NA
 346498 346499 t1382 t1383     TRUE 0.870 10.000 0.000 NA   NA
 346499 346500 t1383 t1384     TRUE 0.902 4.000 0.000 NA   NA
 346500 2200616 t1384 t1385   eha FALSE 0.049 207.000 0.000 NA   NA
 2200616 346501 t1385 t1386 eha   TRUE 0.909 3.000 0.000 NA   NA
 346501 346502 t1386 t1387   gam TRUE 0.912 28.000 0.400 NA   NA
 346502 346503 t1387 t1388 gam   FALSE 0.290 98.000 0.000 NA   NA
 346503 346504 t1388 t1389     TRUE 0.924 -3.000 0.000 NA   NA
 346504 346505 t1389 t1390     TRUE 0.986 10.000 0.667 NA   NA
 346505 346506 t1390 t1391     TRUE 0.924 -3.000 0.000 NA   NA
 346506 346507 t1391 t1392     TRUE 0.891 -7.000 0.000 NA   NA
 346507 346508 t1392 t1393     TRUE 0.924 -3.000 0.000 NA   NA
 346508 346509 t1393 t1394     TRUE 0.924 -3.000 0.000 NA   NA
 346509 346510 t1394 t1395     TRUE 0.873 -10.000 0.000 NA   NA
 346510 346511 t1395 t1396     TRUE 0.913 -10.000 0.107 NA   NA
 346511 346512 t1396 t1397     TRUE 0.934 -28.000 0.214 NA   NA
 346514 346515 t1399 t1400 pntA pntB TRUE 0.998 11.000 0.745 0.001 Y NA
 346517 346518 t1402 t1403     TRUE 0.997 -13.000 0.869 0.090 Y NA
 346519 346520 t1404 t1405   asr FALSE 0.019 269.000 0.000 NA   NA
 346523 346524 t1408 t1409     TRUE 0.583 188.000 0.408 1.000 Y NA
 346524 346525 t1409 t1410     TRUE 0.622 126.000 0.455 1.000 N NA
 346526 346527 t1411 t1412     FALSE 0.173 172.000 0.079 0.096 N NA
 346527 346528 t1412 t1413     TRUE 0.999 0.000 0.903 0.096 Y NA
 346528 346529 t1413 t1414     TRUE 0.978 10.000 0.313 0.056 N NA
 346529 346530 t1414 t1415     TRUE 0.938 29.000 0.403 0.056 N NA
 346530 346531 t1415 t1416     FALSE 0.014 305.000 0.000 1.000   NA
 346531 346532 t1416 t1417   dmsC TRUE 0.663 43.000 0.125 1.000   NA
 346532 346533 t1417 t1418 dmsC dmsB TRUE 0.982 2.000 0.333 1.000   NA
 346533 346534 t1418 t1419 dmsB dmsA TRUE 0.997 11.000 0.667 0.051 Y NA
 346534 346535 t1419 t1420 dmsA dmsA TRUE 0.922 102.000 0.231 0.001 Y NA
 346535 2200617 t1420 t1421 dmsA   FALSE 0.136 157.000 0.000 NA   NA
 346537 346538 t1423 t1424 speG   TRUE 0.518 36.000 0.055 NA   NA
 346539 346540 t1425 t1426   rspA FALSE 0.266 122.000 0.000 1.000   NA
 346540 346541 t1426 t1427 rspA rspB TRUE 0.767 11.000 0.000 1.000 N NA
 346541 346542 t1427 t1428 rspB   TRUE 0.601 54.000 0.195 1.000 N NA
 346542 2200618 t1428 t1429     FALSE 0.188 144.000 0.000 NA   NA
 346543 346544 t1430 t1431     FALSE 0.342 181.000 0.375 NA   NA
 346544 346545 t1431 t1432     FALSE 0.194 130.000 0.047 1.000   NA
 346546 346547 t1433 t1434 dcp   FALSE 0.010 345.000 0.000 NA   NA
 346552 346553 t1439 t1440 marB marA TRUE 0.948 29.000 0.667 NA   NA
 346553 346554 t1440 t1441 marA marR TRUE 0.993 20.000 0.667 0.051 Y NA
 346556 346557 t1443 t1444     FALSE 0.064 116.000 0.027 1.000 N NA
 346558 346559 t1445 t1446     FALSE 0.064 73.000 0.016 1.000 N NA
 346559 346560 t1446 t1447     TRUE 0.881 0.000 0.037 NA   NA
 346560 346561 t1447 t1448     FALSE 0.036 223.000 0.000 NA   NA
 346563 346564 t1451 t1452   hyaF TRUE 0.865 -12.000 0.000 NA   NA
 346564 346565 t1452 t1453 hyaF hyaE TRUE 0.974 18.000 0.769 NA   NA
 346565 346566 t1453 t1454 hyaE   TRUE 0.981 -3.000 0.308 NA   NA
 346566 346567 t1454 t1455   hyaD TRUE 0.977 0.000 0.250 NA   NA
 346567 346568 t1455 t1456 hyaD hyaC TRUE 0.985 6.000 0.177 1.000 Y NA
 346568 2200620 t1456 t1457 hyaC hyaB TRUE 0.819 -34.000 0.000 NA   NA
 2200620 346569 t1457 t1458 hyaB hyaA TRUE 0.909 3.000 0.000 NA   NA
 346570 346571 t1459 t1460     FALSE 0.321 46.000 0.000 NA N NA
 346572 346573 t1461 t1462     TRUE 0.947 -25.000 0.333 1.000 N NA
 346573 346574 t1462 t1463   pqaA FALSE 0.094 177.000 0.000 NA   NA
 346574 346575 t1463 t1464 pqaA   FALSE 0.350 70.000 0.000 NA   NA
 346575 2200621 t1464 t1465     TRUE 0.873 -10.000 0.000 NA   NA
 346576 346577 t1466 t1467     FALSE 0.049 182.000 0.000 1.000 N NA
 2200622 346579 t1469 t1470     TRUE 0.815 -40.000 0.000 NA   NA
 346580 346581 t1471 t1472 glgX   TRUE 0.859 57.000 0.015 0.004 Y NA
 346581 346582 t1472 t1473     TRUE 0.997 -3.000 0.263 0.004 Y NA
 346582 346583 t1473 t1474     FALSE 0.233 129.000 0.000 NA   NA
 346583 346584 t1474 t1475     FALSE 0.191 143.000 0.000 NA   NA
 346585 346586 t1476 t1477   hlyE FALSE 0.241 125.000 0.000 NA   NA
 346588 346589 t1479 t1480   rpsV TRUE 0.786 95.000 0.571 NA   NA
 346589 346590 t1480 t1481 rpsV sfcA TRUE 0.571 177.000 0.750 1.000   NA
 346590 346591 t1481 t1482 sfcA adhP FALSE 0.018 282.000 0.000 1.000   NA
 346593 346594 t1486 t1487   narU FALSE 0.045 215.000 0.000 1.000   NA
 346594 346595 t1487 t1488 narU narZ TRUE 0.735 92.000 0.556 1.000 N NA
 346595 346596 t1488 t1489 narZ narY TRUE 0.999 -3.000 0.833 0.001 Y NA
 346596 2200625 t1489 t1490 narY narW TRUE 0.924 0.000 0.000 NA   NA
 2200625 346597 t1490 t1491 narW   FALSE 0.292 106.000 0.000 NA   NA
 346598 346599 t1492 t1493     FALSE 0.016 283.000 0.000 NA   NA
 346601 346602 t1495 t1496     TRUE 0.464 145.000 0.273 NA   NA
 346604 346605 t1498 t1499     FALSE 0.011 334.000 0.000 1.000   NA
 346606 346607 t1500 t1501     TRUE 0.926 0.000 0.070 NA   NA
 346609 346610 t1503 t1504 srfA srfB TRUE 0.951 5.000 0.167 NA   NA
 346610 346611 t1504 t1505 srfB srfC TRUE 0.979 -3.000 0.278 NA   NA
 346612 346613 t1506 t1507     FALSE 0.131 136.000 0.000 1.000 N NA
 346613 346614 t1507 t1508   pcgL FALSE 0.131 136.000 0.000 1.000 N NA
 346614 346615 t1508 t1509 pcgL   FALSE 0.021 263.000 0.000 NA   NA
 346615 346616 t1509 t1510   ugtL TRUE 0.590 33.000 0.000 NA   NA
 346617 346618 t1511 t1512 sifB   FALSE 0.019 274.000 0.000 NA   NA
 346619 346620 t1513 t1514     FALSE 0.233 79.000 0.032 1.000   NA
 346622 346623 t1516 t1517   tehB FALSE 0.172 156.000 0.088 NA   NA
 346623 346624 t1517 t1518 tehB tehA TRUE 0.940 -13.000 0.175 1.000   NA
 346627 346628 t1521 t1522     TRUE 0.986 -3.000 0.111 1.000 Y NA
 346628 346629 t1522 t1523     TRUE 0.989 11.000 0.148 0.011 Y NA
 346629 346630 t1523 t1524     TRUE 0.973 14.000 0.500 1.000   NA
 346630 346631 t1524 t1525     TRUE 0.700 132.000 0.500 1.000   NA
 346631 346632 t1525 t1526     TRUE 0.959 12.000 0.000 1.000 Y NA
 346632 346633 t1526 t1527     TRUE 0.942 16.000 0.000 1.000 Y NA
 346633 346634 t1527 t1528   aac TRUE 0.930 0.000 0.000 1.000   NA
 346635 346636 t1529 t1530     TRUE 0.839 12.000 0.000 NA   NA
 346636 346637 t1530 t1531     FALSE 0.060 196.000 0.000 NA   NA
 346637 346638 t1531 t1532     FALSE 0.013 250.000 0.000 1.000 N NA
 346638 2200626 t1532 t1533     TRUE 0.472 49.000 0.000 NA   NA
 346640 346641 t1536 t1537     TRUE 0.983 7.000 0.044 0.055 Y NA
 346641 346642 t1537 t1538     TRUE 0.900 25.000 0.000 1.000 Y NA
 346642 346643 t1538 t1539     TRUE 0.982 -3.000 0.000 1.000 Y NA
 346643 346644 t1539 t1540     FALSE 0.208 137.000 0.000 NA   NA
 346644 346645 t1540 t1541     FALSE 0.004 689.000 0.000 NA   NA
 346646 346647 t1542 t1543     FALSE 0.026 243.000 0.000 NA   NA
 346647 346648 t1543 t1544   hrpA FALSE 0.378 64.000 0.000 NA   NA
 346650 346651 t1546 t1547     FALSE 0.191 143.000 0.000 NA   NA
 346651 346652 t1547 t1548     TRUE 0.989 8.000 0.726 NA   NA
 346652 2200628 t1548 t1549     TRUE 0.924 0.000 0.000 NA   NA
 346653 346654 t1550 t1551 ldhA hslJ FALSE 0.026 111.000 0.012 NA N NA
 346659 346660 t1556 t1557     FALSE 0.005 547.000 0.000 NA   NA
 2200629 346662 t1559 t1560 dbpA   FALSE 0.005 487.000 0.000 NA   NA
 346662 346663 t1560 t1561     FALSE 0.180 146.000 0.019 0.094 N NA
 346663 346664 t1561 t1562     FALSE 0.006 411.000 0.000 NA   NA
 346665 346666 t1563 t1564 ogt fnr FALSE 0.035 196.000 0.000 1.000 N NA
 346666 346667 t1564 t1565 fnr   TRUE 0.836 151.000 0.619 1.000 Y NA
 346671 346672 t1569 t1570     TRUE 0.638 28.000 0.000 NA   NA
 346673 346674 t1571 t1572     FALSE 0.291 99.000 0.000 NA   NA
 346674 346675 t1572 t1573     TRUE 0.711 21.000 0.000 NA   NA
 346675 346676 t1573 t1574     TRUE 0.745 75.000 0.400 NA   NA
 346677 346678 t1575 t1576     FALSE 0.053 202.000 0.000 NA   NA
 346679 346680 t1577 t1578     FALSE 0.233 129.000 0.000 NA   NA
 346682 346683 t1580 t1581     FALSE 0.020 277.000 0.000 1.000   NA
 346688 346689 t1586 t1587 tpx tnpA FALSE 0.018 234.000 0.000 1.000 N NA
 346690 346691 t1588 t1589 tyrR   FALSE 0.284 148.000 0.137 NA   NA
 346691 346692 t1589 t1590     TRUE 0.994 -3.000 0.791 NA   NA
 346692 346693 t1590 t1591   pspE FALSE 0.084 149.000 0.013 NA   NA
 346693 346694 t1591 t1592 pspE pspD TRUE 0.479 76.000 0.133 NA   NA
 346694 346695 t1592 t1593 pspD pspC TRUE 0.835 23.000 0.167 NA   NA
 346695 346696 t1593 t1594 pspC pspB TRUE 0.995 0.000 0.913 NA   NA
 346696 346697 t1594 t1595 pspB pspA TRUE 0.888 60.000 0.739 NA   NA
 346698 346699 t1596 t1597 pspF sapA TRUE 0.636 112.000 0.402 1.000 N NA
 346699 346700 t1597 t1598 sapA sapB TRUE 0.986 -3.000 0.264 0.055 N NA
 346701 2200630 t1599 t1600     FALSE 0.292 106.000 0.000 NA   NA
 2200630 2200631 t1600 t1601     FALSE 0.094 177.000 0.000 NA   NA
 2200631 346702 t1601 t1602     FALSE 0.404 59.000 0.000 NA   NA
 346702 2200632 t1602 t1603     TRUE 0.809 -70.000 0.000 NA   NA
 2200632 346703 t1603 t1604     FALSE 0.009 355.000 0.000 NA   NA
 346704 346705 t1605 t1606     FALSE 0.215 135.000 0.000 NA   NA
 346706 346707 t1608 t1609 sapC sapD TRUE 0.997 0.000 0.667 1.000 Y NA
 346707 346708 t1609 t1610 sapD sapF TRUE 0.998 2.000 0.684 0.015 Y NA
 346709 346710 t1611 t1612     FALSE 0.005 467.000 0.000 NA   NA
 346711 346712 t1613 t1614 fabI   FALSE 0.047 200.000 0.057 NA   NA
 346712 346713 t1614 t1615   rnb FALSE 0.020 302.000 0.105 NA   NA
 346713 346714 t1615 t1616 rnb   FALSE 0.012 262.000 0.000 1.000 N NA
 346714 346715 t1616 t1617     FALSE 0.013 388.000 0.000 0.081 N NA
 346715 346716 t1617 t1618   osmB FALSE 0.021 261.000 0.000 NA   NA
 346717 346718 t1619 t1620   pyrF TRUE 0.798 0.000 0.045 1.000 N NA
 346718 346719 t1620 t1621 pyrF   FALSE 0.079 191.000 0.125 1.000 N NA
 346719 346720 t1621 t1622     TRUE 0.986 7.000 0.576 NA   NA
 346720 346721 t1622 t1623   pgpB FALSE 0.276 150.000 0.143 NA   NA
 346723 346724 t1625 t1626 acnA cysB FALSE 0.002 977.000 0.000 1.000 N NA
 346724 346725 t1626 t1627 cysB topA FALSE 0.001 411.000 0.008 1.000 N NA
 346728 346729 t1630 t1631   btuR TRUE 0.816 -3.000 0.050 1.000 N NA
 346730 346731 t1632 t1633     TRUE 0.647 101.000 0.075 NA Y NA
 346731 346732 t1633 t1634   trpH TRUE 0.968 8.000 0.281 NA   NA
 346733 346734 t1635 t1636 trpE trpD TRUE 0.992 0.000 0.010 0.001 Y NA
 346734 346735 t1636 t1637 trpD trpC TRUE 0.991 4.000 0.293 1.000 Y NA
 346735 346736 t1637 t1638 trpC trpB TRUE 0.995 10.000 0.221 0.001 Y NA
 346736 346737 t1638 t1639 trpB trpA TRUE 0.999 0.000 0.947 0.001 Y NA
 346737 346738 t1639 t1640 trpA   FALSE 0.005 480.000 0.000 NA   NA
 346738 346739 t1640 t1641     FALSE 0.295 90.000 0.000 NA   NA
 346739 346740 t1641 t1642     TRUE 0.748 74.000 0.115 0.002   NA
 346740 346741 t1642 t1643     TRUE 0.939 20.000 0.115 0.002   NA
 346743 346744 t1645 t1646   yciC TRUE 0.819 26.000 0.169 NA   NA
 346744 346745 t1646 t1647 yciC ispZ FALSE 0.400 57.000 0.061 NA   NA
 346745 346746 t1647 t1648 ispZ yciA FALSE 0.175 161.000 0.167 NA N NA
 346748 346749 t1650 t1651   cls FALSE 0.008 360.000 0.000 NA   NA
 346749 346750 t1651 t1652 cls   TRUE 0.820 34.000 0.231 NA   NA
 346751 346752 t1653 t1654   oppF TRUE 0.767 48.000 0.042 1.000 Y NA
 346752 346753 t1654 t1655 oppF oppD TRUE 0.998 -3.000 0.420 0.002 Y NA
 346753 2200634 t1655 t1656 oppD oppC TRUE 0.839 12.000 0.000 NA   NA
 2200634 346754 t1656 t1657 oppC oppB TRUE 0.806 15.000 0.000 NA   NA
 346754 346755 t1657 t1658 oppB oppA TRUE 0.819 122.000 0.151 0.054 Y NA
 346755 346756 t1658 t1659 oppA   FALSE 0.002 659.000 0.000 NA N NA
 346760 346761 t1663 t1664 galU   FALSE 0.118 203.000 0.235 1.000 N NA
 346761 346762 t1664 t1665     FALSE 0.252 91.000 0.048 1.000   NA
 2200635 346763 t1666 t1667   purU FALSE 0.462 51.000 0.000 NA   NA
 346764 346765 t1668 t1669     FALSE 0.007 387.000 0.000 NA   NA
 346765 346766 t1669 t1670   narI FALSE 0.029 242.000 0.000 1.000   NA
 346766 346767 t1670 t1671 narI narJ TRUE 0.998 0.000 0.500 0.004 Y NA
 346767 346768 t1671 t1672 narJ narH TRUE 0.999 -3.000 0.588 0.004 Y NA
 346768 346769 t1672 t1673 narH narG TRUE 0.998 -3.000 0.471 0.001 Y NA
 346769 346770 t1673 t1674 narG narK FALSE 0.004 388.000 0.000 1.000 N NA
 346771 346772 t1676 t1675 narX narL TRUE 0.997 -7.000 0.521 0.015 Y NA
 346777 346778 t1681 t1682 tnpA icdA FALSE 0.035 196.000 0.000 1.000 N NA
 346779 346780 t1683 t1684 rluB   TRUE 0.924 -3.000 0.000 NA   NA
 346780 346781 t1684 t1685     TRUE 0.839 12.000 0.000 NA   NA
 346781 346782 t1685 t1686   trmU TRUE 0.543 54.000 0.158 1.000 N NA
 346782 346783 t1686 t1687 trmU   TRUE 0.533 81.000 0.180 NA   NA
 346783 346784 t1687 t1688   purB TRUE 0.926 4.000 0.093 NA   NA
 346784 346785 t1688 t1689 purB phoP FALSE 0.037 124.000 0.011 1.000 N NA
 346785 346786 t1689 t1690 phoP phoQ TRUE 0.998 0.000 0.940 1.000 Y NA
 346786 346787 t1690 t1691 phoQ   TRUE 0.737 81.000 0.408 NA   NA
 346788 346789 t1692 t1693   pepT TRUE 0.909 4.000 0.000 1.000   NA
 346790 346791 t1694 t1695 potA potB TRUE 0.995 -16.000 0.789 1.000 Y NA
 346791 346792 t1695 t1696 potB sifA FALSE 0.011 329.000 0.000 NA   NA
 346792 346793 t1696 t1697 sifA potC FALSE 0.012 316.000 0.000 NA   NA
 346793 346794 t1697 t1698 potC potD TRUE 0.926 25.000 0.007 0.054 Y NA
 346795 346796 t1699 t1700 cobB   TRUE 0.946 19.000 0.119 1.000 Y NA
 346796 346797 t1700 t1701     TRUE 0.796 29.000 0.225 1.000 N NA
 346797 346798 t1701 t1702     TRUE 0.972 0.000 0.125 0.067 N NA
 346798 346799 t1702 t1703     TRUE 0.969 -7.000 0.175 0.067 N NA
 346800 346801 t1704 t1705 mfd   FALSE 0.094 148.000 0.006 1.000   NA
 346804 346805 t1708 t1709   ndh FALSE 0.106 177.000 0.071 1.000   NA
 346805 346806 t1709 t1710 ndh   FALSE 0.019 255.000 0.057 NA   NA
 346806 346807 t1710 t1711     TRUE 0.726 25.000 0.091 NA   NA
 346807 346808 t1711 t1712     TRUE 0.769 11.000 0.069 1.000 N NA
 346808 346809 t1712 t1713     TRUE 0.958 -19.000 0.310 NA   NA
 346809 346810 t1713 t1714     TRUE 0.973 14.000 0.516 NA   NA
 346810 346811 t1714 t1715     TRUE 0.886 3.000 0.051 NA   NA
 346812 346813 t1717 t1718 ptsG   FALSE 0.001 295.000 0.004 NA N NA
 346813 346814 t1718 t1719   holB TRUE 0.970 11.000 0.110 NA Y NA
 346814 346815 t1719 t1720 holB tmk TRUE 0.962 -3.000 0.211 1.000 N NA
 346815 346816 t1720 t1721 tmk   TRUE 0.951 -10.000 0.209 NA   NA
 346816 346817 t1721 t1722   pabC TRUE 0.966 3.000 0.204 NA   NA
 346817 346818 t1722 t1723 pabC fabF FALSE 0.374 124.000 0.187 1.000 N NA
 346818 346819 t1723 t1724 fabF acpP TRUE 0.868 86.000 0.346 1.000 Y NA
 346819 346820 t1724 t1725 acpP fabG TRUE 0.838 156.000 0.321 0.004 Y NA
 346820 346821 t1725 t1726 fabG fabD TRUE 0.995 13.000 0.432 0.004 Y NA
 346821 346822 t1726 t1727 fabD fabH TRUE 0.987 16.000 0.182 0.004 Y NA
 346822 346823 t1727 t1728 fabH plsX TRUE 0.946 80.000 0.380 0.004 Y NA
 346823 346824 t1728 t1729 plsX rpmF TRUE 0.570 134.000 0.418 1.000 N NA
 346824 346825 t1729 t1730 rpmF   TRUE 0.887 52.000 0.599 NA   NA
 346827 346828 t1732 t1733 rluC   FALSE 0.031 190.000 0.005 NA   NA
 346830 346831 t1735 t1736 tnpA flgL FALSE 0.021 222.000 0.000 1.000 N NA
 346831 346832 t1736 t1737 flgL flgK TRUE 0.988 15.000 0.142 0.001 Y NA
 346832 346833 t1737 t1738 flgK flgJ TRUE 0.979 65.000 0.705 0.002 Y NA
 346833 346834 t1738 t1739 flgJ flgI TRUE 0.991 0.000 0.036 0.006 Y NA
 346834 346835 t1739 t1740 flgI flgH TRUE 0.989 6.000 0.073 0.006 Y NA
 346835 346836 t1740 t1741 flgH flgG TRUE 0.953 55.000 0.268 0.005 Y NA
 346836 346837 t1741 t1742 flgG flgF TRUE 0.995 14.000 0.420 0.001 Y NA
 346837 346838 t1742 t1743 flgF flgE TRUE 0.992 21.000 0.476 0.003 Y NA
 346838 346839 t1743 t1744 flgE flgD TRUE 0.915 27.000 0.116 NA Y NA
 346839 346840 t1744 t1745 flgD flgC TRUE 0.977 12.000 0.186 NA Y NA
 346840 346841 t1745 t1746 flgC flgB TRUE 0.999 4.000 0.824 0.003 Y NA
 346842 346843 t1747 t1748 flgA flgM TRUE 0.845 92.000 0.330 NA Y NA
 346843 346844 t1748 t1749 flgM flgN TRUE 0.997 5.000 0.361 0.002 Y NA
 346845 346846 t1750 t1751 mviN mviM FALSE 0.006 346.000 0.022 1.000   NA
 346846 346847 t1751 t1752 mviM   TRUE 0.940 2.000 0.103 NA   NA
 346847 346848 t1752 t1753   rimJ TRUE 0.682 36.000 0.116 NA   NA
 346849 346850 t1754 t1755   grxB FALSE 0.362 64.000 0.103 1.000 N NA
 346850 346851 t1755 t1756 grxB yceB FALSE 0.444 58.000 0.078 NA   NA
 346851 346852 t1756 t1757 yceB pyrC FALSE 0.172 104.000 0.022 NA   NA
 346852 346853 t1757 t1758 pyrC dinI FALSE 0.219 74.000 0.031 NA   NA
 346853 346854 t1758 t1759 dinI bssS FALSE 0.015 290.000 0.000 NA   NA
 346854 346855 t1759 t1760 bssS solA TRUE 0.703 113.000 0.423 NA   NA
 346855 346856 t1760 t1761 solA   TRUE 0.810 41.000 0.269 NA   NA
 346856 2200637 t1761 t1762   yceJ FALSE 0.021 263.000 0.000 NA   NA
 2200637 346857 t1762 t1763 yceJ   TRUE 0.924 -3.000 0.000 NA   NA
 346859 346860 t1765 t1766 htrB yceE TRUE 0.765 155.000 0.857 0.087 N NA
 346860 346861 t1766 t1767 yceE msyB TRUE 0.687 82.000 0.333 NA   NA
 346862 346863 t1768 t1769   mdoH TRUE 0.488 74.000 0.135 NA   NA
 346863 346864 t1769 t1770 mdoH mdoG TRUE 0.978 -7.000 0.469 1.000 N NA
 346866 346867 t1772 t1773     TRUE 0.753 -64.000 0.046 NA   NA
 346867 346868 t1773 t1774     FALSE 0.237 67.000 0.028 NA   NA
 346868 346869 t1774 t1775     TRUE 0.653 132.000 0.429 NA   NA
 346869 346870 t1775 t1776   csgA TRUE 0.873 62.000 0.667 NA   NA
 346870 346871 t1776 t1777 csgA csgB TRUE 0.927 42.000 0.333 0.008   NA
 346872 346873 t1778 t1779 csgD csgE TRUE 0.806 29.000 0.176 NA   NA
 346873 346874 t1779 t1780 csgE csgF TRUE 0.957 27.000 0.723 NA   NA
 346874 346875 t1780 t1781 csgF csgG TRUE 0.695 27.000 0.085 NA   NA
 346876 346877 t1782 t1783     TRUE 0.619 53.000 0.145 NA   NA
 346877 346878 t1783 t1784     TRUE 0.932 24.000 0.417 1.000   NA
 346878 346879 t1784 t1785     TRUE 0.779 85.000 0.169 1.000 Y NA
 346880 346881 t1787 t1788     TRUE 0.923 14.000 0.182 1.000   NA
 346881 346882 t1788 t1789     FALSE 0.046 283.000 0.000 0.054   NA
 346882 346883 t1789 t1790     TRUE 0.842 46.000 0.375 NA   NA
 346884 346885 t1791 t1792     FALSE 0.011 337.000 0.000 1.000   NA
 346885 346886 t1792 t1793     TRUE 0.517 113.000 0.000 0.054   NA
 346886 346887 t1793 t1794     FALSE 0.017 286.000 0.000 1.000   NA
 346888 346889 t1795 t1796 phoH putP FALSE 0.002 827.000 0.000 1.000 N NA
 346890 346891 t1797 t1798 putA   TRUE 0.480 59.000 0.094 NA   NA
 346892 346893 t1799 t1800     FALSE 0.125 137.000 0.028 NA   NA
 346894 346895 t1801 t1802 wrbA   TRUE 0.909 21.000 0.290 NA   NA
 346896 346897 t1803 t1804 agp scsD FALSE 0.238 133.000 0.000 1.000   NA
 346897 346898 t1804 t1805 scsD scsC TRUE 0.995 -10.000 0.298 0.003 Y NA
 346898 346899 t1805 t1806 scsC scsB TRUE 0.997 -3.000 0.317 0.003 Y NA
 346899 346900 t1806 t1807 scsB scsA TRUE 0.855 49.000 0.438 NA   NA
 346901 346902 t1808 t1809 cbpA yccD TRUE 0.990 0.000 0.512 NA   NA
 346903 346904 t1810 t1811   hpaA TRUE 0.827 14.000 0.067 1.000   NA
 346904 346905 t1811 t1812 hpaA hpaX TRUE 0.942 10.000 0.233 1.000 N NA
 346905 346906 t1812 t1813 hpaX hpcH TRUE 0.809 72.000 0.175 1.000 Y NA
 346906 346907 t1813 t1814 hpcH hpcG TRUE 0.967 11.000 0.439 1.000 N NA
 346907 346908 t1814 t1815 hpcG hpcD FALSE 0.404 144.000 0.282 1.000 N NA
 346908 346909 t1815 t1816 hpcD hpcB TRUE 0.970 10.000 0.330 1.000   NA
 346909 2200638 t1816 t1817 hpcB hpcC TRUE 0.914 2.000 0.000 NA   NA
 2200638 346910 t1817 t1818 hpcC hpaG TRUE 0.924 -3.000 0.000 NA   NA
 346911 346912 t1819 t1820 hpcR hpaB TRUE 0.581 106.000 0.000 0.001 N NA
 346912 346913 t1820 t1821 hpaB hpaC TRUE 0.970 18.000 0.226 0.001   NA
 346915 346916 t1823 t1824 copR copS TRUE 0.999 -7.000 0.857 0.001 Y NA
 346916 346917 t1824 t1825 copS pipD FALSE 0.059 173.000 0.000 1.000 N NA
 346917 346918 t1825 t1826 pipD   FALSE 0.288 109.000 0.000 NA   NA
 346920 346921 t1828 t1829 sigD sigE TRUE 0.940 17.000 0.333 NA   NA
 346921 346922 t1829 t1830 sigE pipB FALSE 0.005 548.000 0.000 NA   NA
 346922 346923 t1830 t1831 pipB pipA FALSE 0.036 223.000 0.000 NA   NA
 346924 400835 t1832 t1833 tnpA tRNA-Ser FALSE 0.084 182.000 0.000 NA   NA
 346925 346926 t1834 t1835     FALSE 0.192 87.000 0.018 1.000   NA
 346927 2200639 t1836 t1838     TRUE 0.472 49.000 0.000 NA   NA
 2200639 346928 t1838 t1837   tnpA TRUE 0.805 -802.000 0.000 NA   NA
 346928 2200640 t1837 t1839 tnpA   FALSE 0.008 370.000 0.000 NA   NA
 346929 346930 t1840 t1841     TRUE 0.491 58.000 0.094 NA   NA
 346932 346933 t1843 t1844   mgsA FALSE 0.250 95.000 0.055 NA   NA
 346935 346936 t1846 t1847 yccF   TRUE 0.787 19.000 0.090 NA   NA
 346938 346939 t1849 t1850 sulA ompA FALSE 0.005 355.000 0.000 1.000 N NA
 346941 346942 t1852 t1853   fabA TRUE 0.625 69.000 0.290 1.000 N NA
 346943 346944 t1854 t1855 rmf   FALSE 0.023 254.000 0.000 NA   NA
 346944 346945 t1855 t1856   pqiB TRUE 0.990 -3.000 0.531 NA   NA
 346945 346946 t1856 t1857 pqiB pqiA TRUE 0.991 5.000 0.819 NA   NA
 346946 346947 t1857 t1858 pqiA   TRUE 0.771 15.000 0.054 NA   NA
 346947 346948 t1858 t1859     TRUE 0.827 13.000 0.061 1.000   NA
 346950 346951 t1861 t1862   pyrD FALSE 0.140 163.000 0.081 NA   NA
 346951 346952 t1862 t1863 pyrD pepN FALSE 0.006 208.000 0.014 1.000 N NA
 346953 346954 t1864 t1865     FALSE 0.012 313.000 0.000 NA   NA
 2200641 346955 t1866 t1867     FALSE 0.004 585.000 0.000 NA   NA
 346955 346956 t1867 t1868     TRUE 0.806 15.000 0.000 NA   NA
 346956 346957 t1868 t1869     TRUE 0.924 0.000 0.000 NA   NA
 346957 346958 t1869 t1870     TRUE 0.994 -3.000 0.792 NA   NA
 346958 346959 t1870 t1871     TRUE 0.941 1.000 0.100 NA   NA
 346959 346960 t1871 t1872     TRUE 0.785 16.000 0.000 NA   NA
 346960 346961 t1872 t1873     FALSE 0.299 88.000 0.000 NA   NA
 346961 346962 t1873 t1874     FALSE 0.404 59.000 0.000 NA   NA
 346962 346963 t1874 t1875     TRUE 0.924 0.000 0.000 NA   NA
 346963 346964 t1875 t1876     FALSE 0.061 195.000 0.000 NA   NA
 346964 346965 t1876 t1877     TRUE 0.924 -3.000 0.000 NA   NA
 346965 346966 t1877 t1878     TRUE 0.909 3.000 0.000 NA   NA
 346966 346967 t1878 t1879     TRUE 0.902 4.000 0.000 NA   NA
 346967 346968 t1879 t1880     TRUE 0.924 0.000 0.000 NA   NA
 346968 346969 t1880 t1881     FALSE 0.091 178.000 0.000 NA   NA
 346969 346970 t1881 t1882     TRUE 0.990 4.000 0.667 NA   NA
 346970 346971 t1882 t1883     TRUE 0.914 12.000 0.150 NA   NA
 346971 346972 t1883 t1884     TRUE 0.902 4.000 0.000 NA   NA
 346972 346973 t1884 t1885     TRUE 0.873 -10.000 0.000 NA   NA
 346973 346974 t1885 t1886     TRUE 0.858 -13.000 0.000 NA   NA
 346974 346975 t1886 t1887     TRUE 0.924 -3.000 0.000 NA   NA
 346975 346976 t1887 t1888     TRUE 0.819 -34.000 0.000 NA   NA
 346976 346977 t1888 t1889     TRUE 0.517 42.000 0.000 NA   NA
 346977 346978 t1889 t1890     TRUE 0.839 12.000 0.000 NA   NA
 346978 346979 t1890 t1891     TRUE 0.895 5.000 0.000 NA   NA
 346979 346980 t1891 t1892     TRUE 0.806 15.000 0.000 NA   NA
 346980 346981 t1892 t1893     FALSE 0.292 92.000 0.000 NA   NA
 346981 346982 t1893 t1894     TRUE 0.924 0.000 0.000 NA   NA
 346982 346983 t1894 t1895     TRUE 0.819 -34.000 0.000 NA   NA
 346983 346984 t1895 t1896     FALSE 0.295 90.000 0.000 NA   NA
 346984 346985 t1896 t1897     FALSE 0.378 64.000 0.000 NA   NA
 346985 346986 t1897 t1898     TRUE 0.510 43.000 0.000 NA   NA
 346986 346987 t1898 t1899     TRUE 0.924 -3.000 0.000 NA   NA
 346987 346988 t1899 t1900     TRUE 0.924 0.000 0.000 NA   NA
 346988 346989 t1900 t1901     TRUE 0.975 -13.000 0.429 NA   NA
 346991 346992 t1903 t1904     FALSE 0.007 399.000 0.000 NA   NA
 346992 346993 t1904 t1905     FALSE 0.223 133.000 0.000 NA   NA
 346993 346994 t1905 t1906     FALSE 0.046 209.000 0.000 NA   NA
 346994 346995 t1906 t1907     TRUE 0.537 40.000 0.000 NA   NA
 346995 346996 t1907 t1908     TRUE 0.981 -10.000 0.500 NA   NA
 346996 346997 t1908 t1909     FALSE 0.080 185.000 0.000 NA   NA
 346997 346998 t1909 t1910     TRUE 0.728 11.000 0.013 NA   NA
 346998 346999 t1910 t1911     FALSE 0.215 135.000 0.000 NA   NA
 346999 347000 t1911 t1912     FALSE 0.313 82.000 0.000 NA   NA
 347000 2200642 t1912 t1913     FALSE 0.290 94.000 0.000 NA   NA
 2200642 347001 t1913 t1914     TRUE 0.902 4.000 0.000 NA   NA
 347001 347002 t1914 t1915     TRUE 0.924 0.000 0.000 NA   NA
 347002 347003 t1915 t1916     TRUE 0.924 -3.000 0.000 NA   NA
 347003 347004 t1916 t1917     TRUE 0.966 11.000 0.333 NA   NA
 347004 347005 t1917 t1918     TRUE 0.916 3.000 0.000 1.000   NA
 347005 347006 t1918 t1919     FALSE 0.327 85.000 0.000 1.000   NA
 347007 347008 t1920 t1921     FALSE 0.016 289.000 0.000 NA   NA
 347008 347009 t1921 t1922   gam FALSE 0.293 91.000 0.000 NA   NA
 347009 347010 t1922 t1923 gam betA TRUE 0.838 6.000 0.040 NA   NA
 347010 347011 t1923 t1924 betA exo TRUE 0.971 -3.000 0.000 0.058   NA
 347011 347012 t1924 t1925 exo   FALSE 0.323 78.000 0.000 NA   NA
 347012 347013 t1925 t1926     TRUE 0.924 -3.000 0.000 NA   NA
 347013 347014 t1926 t1927     TRUE 0.924 0.000 0.000 NA   NA
 347014 347015 t1927 t1928   xis TRUE 0.528 41.000 0.000 NA   NA
 347015 347016 t1928 t1929 xis int TRUE 0.989 -3.000 0.500 NA   NA
 347016 347017 t1929 t1930 int pncB FALSE 0.035 195.000 0.000 1.000 N NA
 347018 2200643 t1931 t1932     FALSE 0.025 246.000 0.000 NA   NA
 347019 347020 t1933 t1934   asnS FALSE 0.006 201.000 0.005 1.000 N NA
 347020 347021 t1934 t1935 asnS ompF FALSE 0.002 606.000 0.000 1.000 N NA
 347021 347022 t1935 t1936 ompF aspC FALSE 0.039 185.000 0.060 1.000 N NA
 347023 347024 t1937 t1938 ycbL   TRUE 0.697 28.000 0.089 NA   NA
 347024 347025 t1938 t1939   ycbB FALSE 0.106 260.000 0.372 NA   NA
 347025 347026 t1939 t1940 ycbB mukB FALSE 0.011 345.000 0.000 1.000   NA
 347026 347027 t1940 t1941 mukB mukE TRUE 0.994 0.000 0.000 0.001 Y NA
 347027 347028 t1941 t1942 mukE mukF TRUE 0.961 8.000 0.036 NA Y NA
 347028 347029 t1942 t1943 mukF smtA TRUE 0.964 -7.000 0.325 NA N NA
 347031 347032 t1945 t1946   kdsB FALSE 0.023 211.000 0.023 NA   NA
 347032 347033 t1946 t1947 kdsB   TRUE 0.979 -3.000 0.265 NA   NA
 347033 2200644 t1947 t1948   ycaQ FALSE 0.455 52.000 0.000 NA   NA
 2200644 347034 t1948 t1949 ycaQ lpxK TRUE 0.503 44.000 0.000 NA   NA
 347034 347035 t1949 t1950 lpxK msbA TRUE 0.960 -3.000 0.205 1.000 N NA
 347035 347036 t1950 t1951 msbA ycaI TRUE 0.776 37.000 0.075 0.085   NA
 347036 347037 t1951 t1952 ycaI himD FALSE 0.016 230.000 0.003 1.000   NA
 347037 347038 t1952 t1953 himD rpsA FALSE 0.333 156.000 0.292 1.000 N NA
 347038 347039 t1953 t1954 rpsA cmk TRUE 0.521 114.000 0.281 1.000 N NA
 347039 347040 t1954 t1955 cmk   FALSE 0.011 173.000 0.004 1.000 N NA
 347040 347041 t1955 t1956   aroA FALSE 0.023 143.000 0.003 1.000 N NA
 347041 347042 t1956 t1957 aroA serC TRUE 0.640 71.000 0.033 1.000 Y NA
 347042 347043 t1957 t1958 serC   FALSE 0.037 186.000 0.014 NA   NA
 347044 347045 t1959 t1960   focA FALSE 0.007 405.000 0.000 NA   NA
 347045 347046 t1960 t1961 focA pflB TRUE 0.714 60.000 0.345 1.000 N NA
 347047 347048 t1963 t1964   pflA FALSE 0.031 234.000 0.000 NA   NA
 347049 347050 t1965 t1966 ycaM ycaD FALSE 0.023 218.000 0.000 1.000 N NA
 347050 347051 t1966 t1967 ycaD   FALSE 0.044 213.000 0.000 NA   NA
 347051 347052 t1967 t1968   dmsC TRUE 0.621 30.000 0.000 NA   NA
 347052 347053 t1968 t1969 dmsC dmsB TRUE 0.921 2.000 0.000 1.000   NA
 347053 347054 t1969 t1970 dmsB dmsA TRUE 0.989 11.000 0.172 0.048 Y NA
 347054 347055 t1970 t1971 dmsA serS FALSE 0.016 237.000 0.000 1.000 N NA
 347055 347056 t1971 t1972 serS ycaJ FALSE 0.040 259.000 0.078 0.083 N NA
 347056 347057 t1972 t1973 ycaJ lolA TRUE 0.915 10.000 0.167 1.000 N NA
 347057 347058 t1973 t1974 lolA ftsK FALSE 0.439 142.000 0.305 1.000 N NA
 347058 347059 t1974 t1975 ftsK lrp TRUE 0.511 135.000 0.345 1.000 N NA
 347060 347061 t1976 t1977 trxB cydD TRUE 0.585 114.000 0.049 1.000 Y NA
 347061 347062 t1977 t1978 cydD cydC TRUE 0.999 1.000 0.631 0.005 Y NA
 347062 347063 t1978 t1979 cydC aat TRUE 0.791 45.000 0.049 1.000 Y NA
 347063 347064 t1979 t1980 aat infA FALSE 0.002 312.000 0.020 1.000 N NA
 347066 347067 t1982 t1983     TRUE 0.926 20.000 0.333 NA   NA
 347067 400780 t1983 t1984   tRNA-Ser FALSE 0.167 149.000 0.000 NA   NA
 400780 347068 t1984 t1985 tRNA-Ser   TRUE 0.492 46.000 0.000 NA   NA
 347068 347069 t1985 t1986     FALSE 0.292 107.000 0.000 NA   NA
 347069 347070 t1986 t1987     FALSE 0.124 162.000 0.000 NA   NA
 347071 347072 t1988 t1989 clpA   TRUE 0.937 31.000 0.596 NA   NA
 347074 347075 t1991 t1992 ybjZ ybjY TRUE 0.995 -3.000 0.789 0.090 N NA
 347078 347079 t1995 t1996     FALSE 0.134 144.000 0.043 NA   NA
 347079 347080 t1996 t1997   hcr TRUE 0.985 9.000 0.059 0.016 Y NA
 347080 347081 t1997 t1998 hcr poxB FALSE 0.027 158.000 0.025 1.000 N NA
 347081 347082 t1998 t1999 poxB ybjU TRUE 0.810 39.000 0.041 1.000 Y NA
 347082 347083 t1999 t2000 ybjU   TRUE 0.783 11.000 0.074 1.000 N NA
 347083 347084 t2000 t2001     TRUE 0.776 96.000 0.022 0.004 Y NA
 347085 347086 t2002 t2003     TRUE 0.881 -3.000 0.037 NA   NA
 347087 347088 t2004 t2005   artP FALSE 0.038 229.000 0.081 NA   NA
 347088 347089 t2005 t2006 artP artI TRUE 0.976 18.000 0.323 1.000 Y NA
 347089 347090 t2006 t2007 artI artQ TRUE 0.994 7.000 0.260 0.052 Y NA
 347090 347091 t2007 t2008 artQ artM TRUE 0.999 0.000 0.714 0.015 Y NA
 347091 347092 t2008 t2009 artM artJ FALSE 0.282 237.000 0.143 0.052 Y NA
 347093 347094 t2010 t2011     TRUE 0.986 10.000 0.800 1.000 N NA
 347094 347095 t2011 t2012     TRUE 0.977 32.000 0.800 0.013   NA
 347095 347096 t2012 t2013     TRUE 0.879 9.000 0.000 NA   NA
 347096 347097 t2013 t2014   ybjF FALSE 0.326 77.000 0.000 NA   NA
 347097 347098 t2014 t2015 ybjF   TRUE 0.769 43.000 0.226 NA   NA
 347098 347099 t2015 t2016   potI TRUE 0.653 74.000 0.264 NA   NA
 347099 347100 t2016 t2017 potI potH TRUE 0.998 -3.000 0.528 0.052 Y NA
 347100 347101 t2017 t2018 potH potG TRUE 0.996 10.000 0.857 1.000 Y NA
 347101 347102 t2018 t2019 potG potF TRUE 0.929 88.000 0.679 1.000 Y NA
 347102 347103 t2019 t2020 potF   FALSE 0.009 349.000 0.000 NA   NA
 347103 347104 t2020 t2021   rimK TRUE 0.474 97.000 0.161 NA   NA
 347104 347105 t2021 t2022 rimK nfsA FALSE 0.424 58.000 0.114 1.000 N NA
 347105 347106 t2022 t2023 nfsA ybjC TRUE 0.923 -16.000 0.159 NA   NA
 347111 347112 t2028 t2029     TRUE 0.930 -3.000 0.000 1.000   NA
 347114 347115 t2031 t2032 ybjG deoR TRUE 0.648 72.000 0.235 1.000   NA
 347118 347119 t2035 t2036 yliI   FALSE 0.200 119.000 0.047 NA   NA
 347121 347122 t2038 t2039 yliD yliC TRUE 0.998 3.000 0.689 0.052 Y NA
 347122 347123 t2039 t2040 yliC yliB TRUE 0.976 61.000 0.803 0.052 Y NA
 347123 347124 t2040 t2041 yliB   TRUE 0.611 33.000 0.000 1.000   NA
 347124 347125 t2041 t2042   ybiK TRUE 0.865 11.000 0.000 1.000   NA
 347126 347127 t2043 t2044 moeA moeB TRUE 0.997 0.000 0.323 0.003 Y NA
 347127 347128 t2044 t2045 moeB ybiY FALSE 0.010 278.000 0.000 1.000 N NA
 347128 347129 t2045 t2046 ybiY ybiW TRUE 0.961 6.000 0.000 0.002 N NA
 347134 347135 t2051 t2052 ybiR   TRUE 0.611 -3.000 0.014 1.000 N NA
 347137 347138 t2054 t2055 tnpA ompX FALSE 0.038 192.000 0.000 1.000 N NA
 347139 347140 t2056 t2057 ybiF dps FALSE 0.010 303.000 0.044 1.000   NA
 347140 347141 t2057 t2058 dps glnH FALSE 0.003 477.000 0.000 1.000 N NA
 347141 347142 t2058 t2059 glnH glnP TRUE 0.651 146.000 0.000 0.064 Y NA
 347142 347143 t2059 t2060 glnP glnQ TRUE 0.975 -3.000 0.026 1.000 Y NA
 347143 347144 t2060 t2061 glnQ   FALSE 0.084 119.000 0.039 1.000 N NA
 347145 347146 t2063 t2064 ybiI   FALSE 0.132 158.000 0.000 NA   NA
 347146 347147 t2064 t2065   ybiJ TRUE 0.858 -13.000 0.000 NA   NA
 2200647 2200648 t2066 t2067 ybiB   TRUE 0.621 30.000 0.000 NA   NA
 2200648 347148 t2067 t2068   rhlE FALSE 0.048 208.000 0.000 NA   NA
 347149 347150 t2069 t2070 ybiH   TRUE 0.968 0.000 0.236 1.000 N NA
 347150 347151 t2070 t2071   ybhF TRUE 0.987 -7.000 0.545 1.000   NA
 347151 347152 t2071 t2072 ybhF   TRUE 0.992 -7.000 0.547 0.083   NA
 347152 347153 t2072 t2073     TRUE 0.956 116.000 0.609 0.005 Y NA
 347155 347156 t2075 t2076 ybhP ybhO TRUE 0.924 -3.000 0.000 NA   NA
 347156 347157 t2076 t2077 ybhO ybhN TRUE 0.924 0.000 0.000 NA   NA
 2200649 347158 t2078 t2079     FALSE 0.070 190.000 0.000 NA   NA
 347158 2200650 t2079 t2080   ybhL FALSE 0.175 147.000 0.000 NA   NA
 2200650 347159 t2080 t2081 ybhL moaE TRUE 0.478 48.000 0.000 NA   NA
 347159 347160 t2081 t2082 moaE moaD TRUE 0.998 2.000 0.501 0.003 Y NA
 347160 347161 t2082 t2083 moaD moaC TRUE 0.994 -7.000 0.175 0.003 Y NA
 347161 347162 t2083 t2084 moaC moaB TRUE 0.993 3.000 0.109 0.003 Y NA
 347162 347163 t2084 t2085 moaB moaA TRUE 0.972 22.000 0.108 0.003 Y NA
 2200651 347165 t2087 t2088 slrP   TRUE 0.883 8.000 0.000 NA   NA
 347165 347166 t2088 t2089   uvrB FALSE 0.013 309.000 0.000 NA   NA
 347166 347167 t2089 t2090 uvrB bioD FALSE 0.007 651.000 0.000 0.083 N NA
 347167 347168 t2090 t2091 bioD bioC TRUE 0.989 -7.000 0.054 0.002 Y NA
 347168 347169 t2091 t2092 bioC bioF TRUE 0.990 -16.000 0.133 0.002 Y NA
 347169 347170 t2092 t2093 bioF bioB TRUE 0.996 -3.000 0.168 0.002 Y NA
 347171 347172 t2094 t2095 bioA ybhB FALSE 0.231 58.000 0.003 NA   NA
 347173 347174 t2096 t2097 hutH hutU TRUE 0.997 2.000 0.315 0.001 Y NA
 347174 347175 t2097 t2098 hutU hutC FALSE 0.016 196.000 0.037 1.000 N NA
 347175 347176 t2098 t2099 hutC hutG FALSE 0.331 45.000 0.062 1.000 N NA
 347176 347177 t2099 t2100 hutG hutI TRUE 0.953 -3.000 0.171 1.000 N NA
 347181 347182 t2104 t2105 modC modB TRUE 0.998 3.000 0.537 0.001 Y NA
 347182 347183 t2105 t2106 modB modA TRUE 0.999 0.000 0.627 0.001 Y NA
 347183 347184 t2106 t2107 modA ybhT FALSE 0.114 167.000 0.072 NA   NA
 347185 347186 t2108 t2109 modE modF TRUE 0.594 68.000 0.000 0.083   NA
 347186 347187 t2109 t2110 modF   FALSE 0.103 171.000 0.000 NA   NA
 347187 347188 t2110 t2111   galE FALSE 0.036 223.000 0.000 NA   NA
 347188 347189 t2111 t2112 galE galT TRUE 0.945 11.000 0.053 0.001 N NA
 347189 347190 t2112 t2113 galT galK TRUE 0.992 3.000 0.370 0.001 N NA
 347190 347191 t2113 t2114 galK galM TRUE 0.993 -6.000 0.083 0.001 Y NA
 347191 347192 t2114 t2115 galM gpmA FALSE 0.099 224.000 0.009 1.000 Y NA
 347193 347194 t2116 t2117     TRUE 0.998 0.000 0.833 1.000 Y NA
 347194 347195 t2117 t2118   aroG FALSE 0.091 153.000 0.000 1.000 N NA
 347196 347197 t2119 t2120   ybgR FALSE 0.253 111.000 0.057 NA   NA
 347198 347199 t2121 t2122 pnuC nadA TRUE 0.866 25.000 0.023 1.000 Y NA
 347199 400834 t2122 t2123 nadA tRNA-Lys FALSE 0.015 294.000 0.000 NA   NA
 400834 400833 t2123 t2124 tRNA-Lys tRNA-Lys FALSE 0.215 135.000 0.000 NA   NA
 400833 400832 t2124 t2125 tRNA-Lys tRNA-Lys FALSE 0.191 143.000 0.000 NA   NA
 400832 347200 t2125 t2126 tRNA-Lys ybgF FALSE 0.113 165.000 0.000 NA   NA
 347200 347201 t2126 t2127 ybgF pal TRUE 0.903 10.000 0.088 1.000   NA
 347201 347202 t2127 t2128 pal tolB TRUE 0.907 35.000 0.592 1.000 N NA
 347202 347203 t2128 t2129 tolB tolA FALSE 0.092 124.000 0.051 NA N NA
 347203 347204 t2129 t2130 tolA tolR FALSE 0.361 65.000 0.114 NA N NA
 347204 347205 t2130 t2131 tolR tolQ TRUE 0.997 4.000 0.556 0.064 Y NA
 347205 347206 t2131 t2132 tolQ ybgC TRUE 0.992 -3.000 0.593 1.000   NA
 347206 347207 t2132 t2133 ybgC   FALSE 0.044 229.000 0.095 NA   NA
 347207 347208 t2133 t2134     TRUE 0.537 137.000 0.310 NA   NA
 347208 347209 t2134 t2135   cydB TRUE 0.894 15.000 0.149 NA   NA
 347209 347210 t2135 t2136 cydB cydA TRUE 0.971 16.000 0.000 0.048 Y NA
 347210 347211 t2136 t2137 cydA sucD FALSE 0.015 1588.000 0.000 1.000 Y NA
 347211 347212 t2137 t2138 sucD sucC TRUE 0.999 0.000 0.806 0.001 Y NA
 347212 347213 t2138 t2139 sucC sucB TRUE 0.624 142.000 0.136 1.000 Y NA
 347213 347214 t2139 t2140 sucB sucA TRUE 0.992 15.000 0.667 1.000 Y NA
 347214 347215 t2140 t2141 sucA sdhB FALSE 0.020 526.000 0.067 1.000 Y NA
 347215 347216 t2141 t2142 sdhB sdhA TRUE 0.997 14.000 0.604 0.002 Y NA
 347216 347217 t2142 t2143 sdhA sdhD TRUE 0.999 0.000 0.705 0.002 Y NA
 347217 347218 t2143 t2144 sdhD sdhC TRUE 0.998 -6.000 0.453 0.001 Y NA
 347218 347219 t2144 t2145 sdhC   FALSE 0.006 409.000 0.000 NA   NA
 347220 347221 t2146 t2147 gltA   FALSE 0.102 137.000 0.005 NA   NA
 347222 347223 t2148 t2149 nei   TRUE 0.580 34.000 0.000 NA   NA
 347223 2200652 t2149 t2150     FALSE 0.360 68.000 0.000 NA   NA
 2200652 347224 t2150 t2151     TRUE 0.902 4.000 0.000 NA   NA
 347224 2200653 t2151 t2152     FALSE 0.065 193.000 0.000 NA   NA
 2200653 347225 t2152 t2153     FALSE 0.290 94.000 0.000 NA   NA
 347225 2200654 t2153 t2154     TRUE 0.902 4.000 0.000 NA   NA
 2200654 347226 t2154 t2155     FALSE 0.233 129.000 0.000 NA   NA
 347226 347227 t2155 t2156     TRUE 0.707 13.000 0.022 NA   NA
 347227 347228 t2156 t2157     FALSE 0.198 83.000 0.028 NA   NA
 347228 347229 t2157 t2158     FALSE 0.022 259.000 0.000 NA   NA
 347229 347230 t2158 t2159     TRUE 0.914 2.000 0.000 NA   NA
 347230 347231 t2159 t2160     FALSE 0.091 178.000 0.000 NA   NA
 347231 347232 t2160 t2161     FALSE 0.396 60.000 0.000 NA   NA
 347232 347233 t2161 t2162     FALSE 0.011 324.000 0.000 NA   NA
 347233 347234 t2162 t2163     TRUE 0.952 -10.000 0.211 NA   NA
 347234 347235 t2163 t2164     TRUE 0.993 -6.000 0.379 NA Y NA
 347235 347236 t2164 t2165     TRUE 0.736 16.000 0.050 NA   NA
 347238 347239 t2167 t2168 phrB ybfA FALSE 0.143 111.000 0.004 NA   NA
 347240 347241 t2169 t2170 kdpA kdpB TRUE 0.959 21.000 0.201 0.001   NA
 347241 347242 t2170 t2171 kdpB kdpC TRUE 0.997 6.000 0.877 0.001   NA
 347242 347243 t2171 t2173 kdpC kdpD TRUE 0.965 -3.000 0.100 0.089 N NA
 347243 347244 t2173 t2172 kdpD kdpE TRUE 0.995 -3.000 0.385 1.000 Y NA
 347244 2200655 t2172 t2174 kdpE speF FALSE 0.004 762.000 0.000 NA   NA
 2200655 347245 t2174 t2175 speF potE TRUE 0.924 -3.000 0.000 NA   NA
 347245 347246 t2175 t2176 potE   FALSE 0.334 65.000 0.050 1.000   NA
 347247 347248 t2177 t2178 pgm seqA TRUE 0.740 25.000 0.151 1.000 N NA
 347249 347250 t2179 t2180 ybfF ybfE TRUE 0.520 134.000 0.276 NA   NA
 347250 347251 t2180 t2181 ybfE fldA TRUE 0.581 151.000 0.473 1.000   NA
 347251 347252 t2181 t2182 fldA fur FALSE 0.025 282.000 0.156 1.000 N NA
 347252 347253 t2182 t2183 fur   FALSE 0.300 115.000 0.020 0.058 N NA
 347253 347254 t2183 t2184     FALSE 0.138 98.000 0.053 1.000 N NA
 347254 347255 t2184 t2185   citB TRUE 0.983 -13.000 0.618 NA   NA
 347255 347256 t2185 t2186 citB citA FALSE 0.464 51.000 0.069 NA   NA
 347257 347258 t2187 t2188   ybfM TRUE 0.467 50.000 0.000 NA   NA
 347258 347259 t2188 t2189 ybfM glnS FALSE 0.006 452.000 0.000 1.000   NA
 347259 347260 t2189 t2190 glnS nagE FALSE 0.005 211.000 0.006 1.000 N NA