MicrobesOnline Operon Predictions for Streptococcus pyogenes MGAS315

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 268703 268704 SpyM3_0001 SpyM3_0002 dnaA dnaN TRUE 0.591 155.000 0.328 1.000 Y NA
 268704 268705 SpyM3_0002 SpyM3_0003 dnaN   TRUE 0.519 75.000 0.009 NA   NA
 268705 268706 SpyM3_0003 SpyM3_0004     FALSE 0.074 330.000 0.064 NA   NA
 268706 268707 SpyM3_0004 SpyM3_0005   pth TRUE 0.854 70.000 0.184 1.000 Y NA
 268707 268708 SpyM3_0005 SpyM3_0006 pth trcF TRUE 0.452 87.000 0.137 1.000 N NA
 268708 268709 SpyM3_0006 SpyM3_0007 trcF   FALSE 0.094 162.000 0.024 1.000 N NA
 268709 268710 SpyM3_0007 SpyM3_0008   divIC TRUE 0.904 -13.000 0.053 1.000 N NA
 268710 268711 SpyM3_0008 SpyM3_0009 divIC   FALSE 0.097 135.000 0.011 1.000 N NA
 268711 268712 SpyM3_0009 SpyM3_0010   mesJ FALSE 0.217 96.000 0.014 1.000 N NA
 268712 268713 SpyM3_0010 SpyM3_0011 mesJ hpt TRUE 0.951 5.000 0.067 0.064 N NA
 268713 268714 SpyM3_0011 SpyM3_0012 hpt ftsH TRUE 0.864 22.000 0.192 1.000 N NA
 268714 268715 SpyM3_0012 SpyM3_0013 ftsH   FALSE 0.024 326.000 0.009 1.000 N NA
 268715 2179433 SpyM3_0013 SpyM3_r01     FALSE 0.022 565.000 0.000 NA   NA
 2179433 400209 SpyM3_r01 SpyM3_t01   tRNA-Ala TRUE 0.656 45.000 0.000 NA   NA
 400209 2179434 SpyM3_t01 SpyM3_r02 tRNA-Ala   FALSE 0.050 296.000 0.000 NA   NA
 2179434 2179435 SpyM3_r02 SpyM3_r13     FALSE 0.388 82.000 0.000 NA   NA
 2179435 400210 SpyM3_r13 SpyM3_t02   tRNA-Val TRUE 0.778 18.000 0.000 NA   NA
 400210 400211 SpyM3_t02 SpyM3_t03 tRNA-Val tRNA-Asp TRUE 0.778 18.000 0.000 NA   NA
 400211 400212 SpyM3_t03 SpyM3_t04 tRNA-Asp tRNA-Lys TRUE 0.713 32.000 0.000 NA   NA
 400212 400213 SpyM3_t04 SpyM3_t05 tRNA-Lys tRNA-Leu TRUE 0.839 6.000 0.000 NA   NA
 400213 400214 SpyM3_t05 SpyM3_t06 tRNA-Leu tRNA-Thr TRUE 0.816 11.000 0.000 NA   NA
 400214 400215 SpyM3_t06 SpyM3_t07 tRNA-Thr tRNA-Gly TRUE 0.801 13.000 0.000 NA   NA
 400215 400216 SpyM3_t07 SpyM3_t08 tRNA-Gly tRNA-Leu TRUE 0.833 9.000 0.000 NA   NA
 400216 400217 SpyM3_t08 SpyM3_t09 tRNA-Leu tRNA-Arg TRUE 0.780 17.000 0.000 NA   NA
 400217 400218 SpyM3_t09 SpyM3_t10 tRNA-Arg tRNA-Pro TRUE 0.847 4.000 0.000 NA   NA
 400218 2179436 SpyM3_t10 SpyM3_r03 tRNA-Pro   FALSE 0.175 127.000 0.000 NA   NA
 2179436 400219 SpyM3_r03 SpyM3_t11   tRNA-Ala TRUE 0.656 45.000 0.000 NA   NA
 400219 2179437 SpyM3_t11 SpyM3_r04 tRNA-Ala   FALSE 0.050 296.000 0.000 NA   NA
 2179437 2179438 SpyM3_r04 SpyM3_r14     FALSE 0.388 82.000 0.000 NA   NA
 2179438 400220 SpyM3_r14 SpyM3_t12   tRNA-Val TRUE 0.778 18.000 0.000 NA   NA
 400220 400221 SpyM3_t12 SpyM3_t13 tRNA-Val tRNA-Asp TRUE 0.778 18.000 0.000 NA   NA
 400221 400222 SpyM3_t13 SpyM3_t14 tRNA-Asp tRNA-Lys TRUE 0.713 32.000 0.000 NA   NA
 400222 400223 SpyM3_t14 SpyM3_t15 tRNA-Lys tRNA-Leu TRUE 0.839 6.000 0.000 NA   NA
 400223 400224 SpyM3_t15 SpyM3_t16 tRNA-Leu tRNA-Thr TRUE 0.816 11.000 0.000 NA   NA
 400224 400225 SpyM3_t16 SpyM3_t17 tRNA-Thr tRNA-Gly TRUE 0.801 13.000 0.000 NA   NA
 400225 400226 SpyM3_t17 SpyM3_t18 tRNA-Gly tRNA-Leu TRUE 0.833 9.000 0.000 NA   NA
 400226 400227 SpyM3_t18 SpyM3_t19 tRNA-Leu tRNA-Arg TRUE 0.780 17.000 0.000 NA   NA
 400227 400228 SpyM3_t19 SpyM3_t20 tRNA-Arg tRNA-Pro TRUE 0.847 4.000 0.000 NA   NA
 400228 400229 SpyM3_t20 SpyM3_t21 tRNA-Pro tRNA-Met TRUE 0.839 6.000 0.000 NA   NA
 400229 400230 SpyM3_t21 SpyM3_t22 tRNA-Met tRNA-Met TRUE 0.765 21.000 0.000 NA   NA
 400230 400231 SpyM3_t22 SpyM3_t23 tRNA-Met tRNA-Ser TRUE 0.754 23.000 0.000 NA   NA
 400231 400232 SpyM3_t23 SpyM3_t24 tRNA-Ser tRNA-Met TRUE 0.825 10.000 0.000 NA   NA
 400232 400233 SpyM3_t24 SpyM3_t25 tRNA-Met tRNA-Phe TRUE 0.765 21.000 0.000 NA   NA
 400233 400234 SpyM3_t25 SpyM3_t26 tRNA-Phe tRNA-Gly TRUE 0.801 13.000 0.000 NA   NA
 400234 400235 SpyM3_t26 SpyM3_t27 tRNA-Gly tRNA-Ile TRUE 0.697 35.000 0.000 NA   NA
 400235 400236 SpyM3_t27 SpyM3_t28 tRNA-Ile tRNA-Ser TRUE 0.825 10.000 0.000 NA   NA
 400236 268716 SpyM3_t28 SpyM3_0014 tRNA-Ser   FALSE 0.018 1503.000 0.000 NA   NA
 268716 268717 SpyM3_0014 SpyM3_0015   prsA FALSE 0.138 253.000 0.107 NA   NA
 268717 268718 SpyM3_0015 SpyM3_0016 prsA recO FALSE 0.045 186.000 0.000 1.000 N NA
 268718 268719 SpyM3_0016 SpyM3_0017 recO plsX FALSE 0.177 103.000 0.011 1.000 N NA
 268719 268720 SpyM3_0017 SpyM3_0018 plsX acpP.1 TRUE 0.992 -7.000 0.017 0.009 Y NA
 268720 268721 SpyM3_0018 SpyM3_0019 acpP.1 purC FALSE 0.095 152.000 0.017 1.000 N NA
 268721 268722 SpyM3_0019 SpyM3_0020 purC purL FALSE 0.272 194.000 0.043 1.000 Y NA
 268722 268723 SpyM3_0020 SpyM3_0021 purL purF FALSE 0.193 234.000 0.024 1.000 Y NA
 268723 268724 SpyM3_0021 SpyM3_0022 purF purM TRUE 0.953 28.000 0.248 1.000 Y NA
 268724 268725 SpyM3_0022 SpyM3_0023 purM purN TRUE 0.818 168.000 0.238 0.003 Y NA
 268725 268726 SpyM3_0023 SpyM3_0024 purN purH TRUE 0.470 184.000 0.225 1.000 Y NA
 268728 268729 SpyM3_0026 SpyM3_0027 purD purE FALSE 0.326 158.000 0.044 1.000 Y NA
 268729 268730 SpyM3_0027 SpyM3_0028 purE purK TRUE 0.964 41.000 0.002 0.002 Y NA
 268730 268731 SpyM3_0028 SpyM3_0029 purK   TRUE 0.765 21.000 0.000 NA   NA
 268731 268732 SpyM3_0029 SpyM3_0030   purB FALSE 0.033 369.000 0.000 NA   NA
 268732 268733 SpyM3_0030 SpyM3_0031 purB   FALSE 0.151 131.000 0.005 1.000   NA
 268733 268734 SpyM3_0031 SpyM3_0032   ruvB FALSE 0.072 220.000 0.002 1.000   NA
 268734 268735 SpyM3_0032 SpyM3_0033 ruvB   FALSE 0.084 138.000 0.005 1.000 N NA
 268735 268736 SpyM3_0033 SpyM3_0034     TRUE 0.817 23.000 0.019 NA   NA
 268736 268737 SpyM3_0034 SpyM3_0035     TRUE 0.982 -3.000 0.351 NA   NA
 268737 268738 SpyM3_0035 SpyM3_0036   adh2 FALSE 0.018 309.000 0.000 1.000 N NA
 268738 268739 SpyM3_0036 SpyM3_0037 adh2 adh1 FALSE 0.346 253.000 0.012 0.002   NA
 268739 268740 SpyM3_0037 SpyM3_0038 adh1   FALSE 0.023 388.000 0.000 1.000   NA
 268740 268741 SpyM3_0038 SpyM3_0039   rpsJ FALSE 0.040 199.000 0.000 1.000 N NA
 268741 268742 SpyM3_0039 SpyM3_0040 rpsJ rplC TRUE 0.727 248.000 0.467 0.042 Y NA
 268742 268743 SpyM3_0040 SpyM3_0041 rplC rplD TRUE 0.993 24.000 0.544 0.032 Y NA
 268743 268744 SpyM3_0041 SpyM3_0042 rplD rplW TRUE 0.995 0.000 0.307 0.032 Y NA
 268744 268745 SpyM3_0042 SpyM3_0043 rplW rplB TRUE 0.997 18.000 0.849 0.039 Y NA
 268745 268746 SpyM3_0043 SpyM3_0044 rplB rpsS TRUE 0.932 139.000 0.820 0.042 Y NA
 268746 268747 SpyM3_0044 SpyM3_0045 rpsS rplV TRUE 0.996 16.000 0.769 0.042 Y NA
 268747 268748 SpyM3_0045 SpyM3_0046 rplV rpsC TRUE 0.996 13.000 0.719 0.042 Y NA
 268748 268749 SpyM3_0046 SpyM3_0047 rpsC rplP TRUE 0.998 4.000 0.828 0.042 Y NA
 268749 268750 SpyM3_0047 SpyM3_0048 rplP rpmC TRUE 0.997 10.000 0.802 0.032 Y NA
 268750 268751 SpyM3_0048 SpyM3_0049 rpmC rpsQ TRUE 0.996 26.000 0.828 0.032 Y NA
 268751 268752 SpyM3_0049 SpyM3_0050 rpsQ rplN TRUE 0.995 25.000 0.791 0.042 Y NA
 268752 268753 SpyM3_0050 SpyM3_0051 rplN rplX TRUE 0.982 79.000 0.810 0.042 Y NA
 268753 268754 SpyM3_0051 SpyM3_0052 rplX rplE TRUE 0.996 24.000 0.758 0.032 Y NA
 268754 268755 SpyM3_0052 SpyM3_0053 rplE rpsN.1 TRUE 0.994 16.000 0.496 0.032 Y NA
 268755 268756 SpyM3_0053 SpyM3_0054 rpsN.1 rpsH TRUE 0.869 151.000 0.473 0.032 Y NA
 268756 268757 SpyM3_0054 SpyM3_0055 rpsH rplF TRUE 0.898 203.000 0.808 0.032 Y NA
 268757 268758 SpyM3_0055 SpyM3_0056 rplF rplR TRUE 0.967 105.000 0.815 0.032 Y NA
 268758 268759 SpyM3_0056 SpyM3_0057 rplR rpsE TRUE 0.996 19.000 0.814 0.042 Y NA
 268759 268760 SpyM3_0057 SpyM3_0058 rpsE rpmD TRUE 0.996 15.000 0.789 0.042 Y NA
 268760 268761 SpyM3_0058 SpyM3_0059 rpmD rplO TRUE 0.885 216.000 0.653 0.005 Y NA
 268761 268762 SpyM3_0059 SpyM3_0060 rplO secY TRUE 0.973 17.000 0.730 1.000 N NA
 268762 268763 SpyM3_0060 SpyM3_0061 secY adk FALSE 0.299 150.000 0.241 1.000 N NA
 268763 268764 SpyM3_0061 SpyM3_0062 adk infA FALSE 0.197 118.000 0.059 1.000 N NA
 268764 268765 SpyM3_0062 SpyM3_0063 infA rpmJ TRUE 0.912 26.000 0.067 1.000 Y NA
 268765 268766 SpyM3_0063 SpyM3_0064 rpmJ rpsM TRUE 0.978 18.000 0.086 0.032 Y NA
 268766 268767 SpyM3_0064 SpyM3_0065 rpsM rpsK TRUE 0.997 18.000 0.810 0.032 Y NA
 268767 268768 SpyM3_0065 SpyM3_0066 rpsK rpoA TRUE 0.858 46.000 0.308 1.000 N NA
 268768 268769 SpyM3_0066 SpyM3_0067 rpoA rplQ TRUE 0.980 15.000 0.873 1.000 N NA
 268769 2179439 SpyM3_0067 SpyM3_r05 rplQ   FALSE 0.019 823.000 0.000 NA   NA
 2179439 400237 SpyM3_r05 SpyM3_t29   tRNA-Ala TRUE 0.656 45.000 0.000 NA   NA
 400237 2179440 SpyM3_t29 SpyM3_r06 tRNA-Ala   FALSE 0.050 296.000 0.000 NA   NA
 2179440 2179441 SpyM3_r06 SpyM3_r15     FALSE 0.388 82.000 0.000 NA   NA
 2179441 400238 SpyM3_r15 SpyM3_t30   tRNA-Val TRUE 0.778 18.000 0.000 NA   NA
 400238 400239 SpyM3_t30 SpyM3_t31 tRNA-Val tRNA-Gly TRUE 0.839 6.000 0.000 NA   NA
 400239 400240 SpyM3_t31 SpyM3_t32 tRNA-Gly tRNA-Ile TRUE 0.697 35.000 0.000 NA   NA
 400240 400241 SpyM3_t32 SpyM3_t33 tRNA-Ile tRNA-Glu TRUE 0.754 23.000 0.000 NA   NA
 400241 400242 SpyM3_t33 SpyM3_t34 tRNA-Glu tRNA-Ser TRUE 0.816 11.000 0.000 NA   NA
 400242 400243 SpyM3_t34 SpyM3_t35 tRNA-Ser tRNA-Met TRUE 0.825 10.000 0.000 NA   NA
 400243 400244 SpyM3_t35 SpyM3_t36 tRNA-Met tRNA-Phe TRUE 0.765 21.000 0.000 NA   NA
 400244 400245 SpyM3_t36 SpyM3_t37 tRNA-Phe tRNA-Tyr TRUE 0.772 20.000 0.000 NA   NA
 400245 400246 SpyM3_t37 SpyM3_t38 tRNA-Tyr tRNA-Trp TRUE 0.836 7.000 0.000 NA   NA
 400246 400247 SpyM3_t38 SpyM3_t39 tRNA-Trp tRNA-His TRUE 0.809 12.000 0.000 NA   NA
 400247 400248 SpyM3_t39 SpyM3_t40 tRNA-His tRNA-Gln TRUE 0.833 9.000 0.000 NA   NA
 400248 400249 SpyM3_t40 SpyM3_t41 tRNA-Gln tRNA-Leu TRUE 0.772 20.000 0.000 NA   NA
 400249 268770 SpyM3_t41 SpyM3_0068 tRNA-Leu   FALSE 0.063 260.000 0.000 NA   NA
 268770 268771 SpyM3_0068 SpyM3_0069   adcR FALSE 0.018 1323.000 0.000 NA   NA
 268771 268772 SpyM3_0069 SpyM3_0070 adcR adcC TRUE 0.919 4.000 0.192 1.000 N NA
 268772 268773 SpyM3_0070 SpyM3_0071 adcC adcB TRUE 0.996 -7.000 0.673 1.000 Y NA
 268774 268775 SpyM3_0072 SpyM3_0073   tyrS TRUE 0.417 56.000 0.004 1.000 N NA
 268776 268777 SpyM3_0074 SpyM3_0075 pbp1B rpoB FALSE 0.024 264.000 0.000 1.000 N NA
 268777 268778 SpyM3_0075 SpyM3_0076 rpoB rpoC TRUE 0.986 91.000 0.851 0.002 Y NA
 268778 268779 SpyM3_0076 SpyM3_0077 rpoC   FALSE 0.145 170.000 0.007 NA   NA
 268779 268780 SpyM3_0077 SpyM3_0078   comYA TRUE 0.496 93.000 0.083 NA   NA
 268780 268781 SpyM3_0078 SpyM3_0079 comYA comYB TRUE 0.995 -64.000 0.639 1.000 Y NA
 268781 268782 SpyM3_0079 SpyM3_0080 comYB comYC TRUE 0.999 2.000 0.861 0.002 Y NA
 268782 268783 SpyM3_0080 SpyM3_0081 comYC   TRUE 0.982 -40.000 0.110 NA Y NA
 268783 268784 SpyM3_0081 SpyM3_0082     TRUE 0.994 -43.000 0.786 NA   NA
 268784 268785 SpyM3_0082 SpyM3_0083   comYD TRUE 0.978 -7.000 0.250 NA   NA
 268785 268786 SpyM3_0083 SpyM3_0084 comYD   TRUE 0.978 -16.000 0.232 NA   NA
 268786 268787 SpyM3_0084 SpyM3_0085     TRUE 0.469 98.000 0.087 NA   NA
 268787 268788 SpyM3_0085 SpyM3_0086   ackA TRUE 0.646 59.000 0.130 1.000 N NA
 268788 268789 SpyM3_0086 SpyM3_0087 ackA   FALSE 0.110 186.000 0.000 NA   NA
 268790 268791 SpyM3_0088 SpyM3_0089 proC pepA TRUE 0.579 48.000 0.041 1.000 N NA
 268792 268793 SpyM3_0090 SpyM3_0091   trx.1 TRUE 0.959 -3.000 0.140 NA   NA
 268793 268794 SpyM3_0091 SpyM3_0092 trx.1   TRUE 0.926 18.000 0.239 1.000   NA
 268794 268795 SpyM3_0092 SpyM3_0093   ssb.1 FALSE 0.166 152.000 0.034 1.000   NA
 268796 268797 SpyM3_0094 SpyM3_0095     TRUE 0.633 20.000 0.005 1.000 N NA
 268797 268798 SpyM3_0095 SpyM3_0096     TRUE 0.891 -13.000 0.034 1.000 N NA
 268798 268799 SpyM3_0096 SpyM3_0097   nra FALSE 0.199 126.000 0.003 NA   NA
 268800 268801 SpyM3_0098 SpyM3_0099 cbp   TRUE 0.943 -3.000 0.061 NA   NA
 268801 268802 SpyM3_0099 SpyM3_0100     TRUE 0.856 21.000 0.061 NA   NA
 268802 268803 SpyM3_0100 SpyM3_0101     TRUE 0.966 22.000 0.500 NA   NA
 268803 268804 SpyM3_0101 SpyM3_0102     TRUE 0.973 53.000 1.000 NA   NA
 268810 268811 SpyM3_0108 SpyM3_0109   atoD.2 TRUE 0.946 12.000 0.100 1.000 Y NA
 268811 268812 SpyM3_0109 SpyM3_0110 atoD.2   TRUE 0.994 3.000 0.200 0.003 Y NA
 268814 268815 SpyM3_0112 SpyM3_0113     TRUE 0.658 37.000 0.016 NA N NA
 268815 268816 SpyM3_0113 SpyM3_0114     FALSE 0.027 454.000 0.000 NA   NA
 268816 268817 SpyM3_0114 SpyM3_0115   ntpI TRUE 0.913 -10.000 0.000 NA   NA
 268817 268818 SpyM3_0115 SpyM3_0116 ntpI ntpK TRUE 0.997 2.000 0.848 0.010   NA
 268818 268819 SpyM3_0116 SpyM3_0117 ntpK ntpE TRUE 0.884 69.000 0.045 0.005   NA
 268819 268820 SpyM3_0117 SpyM3_0118 ntpE ntpC TRUE 0.971 16.000 0.097 0.005   NA
 268820 268821 SpyM3_0118 SpyM3_0119 ntpC ntpG TRUE 0.998 -3.000 0.487 0.002 Y NA
 268821 268822 SpyM3_0119 SpyM3_0120 ntpG ntpA TRUE 0.837 201.000 0.462 0.011 Y NA
 268822 268823 SpyM3_0120 SpyM3_0121 ntpA ntpB TRUE 0.998 1.000 0.776 0.010 Y NA
 268823 268824 SpyM3_0121 SpyM3_0122 ntpB ntpD TRUE 0.983 45.000 0.238 0.005 Y NA
 268825 268826 SpyM3_0123 SpyM3_0124     TRUE 0.986 13.000 0.818 NA   NA
 268827 268828 SpyM3_0125 SpyM3_0126 purA   FALSE 0.157 327.000 0.000 0.021   NA
 268828 268829 SpyM3_0126 SpyM3_0127   nusG FALSE 0.092 173.000 0.000 1.000   NA
 268829 268830 SpyM3_0127 SpyM3_0128 nusG nga FALSE 0.024 371.000 0.000 1.000   NA
 268830 268831 SpyM3_0128 SpyM3_0129 nga   TRUE 0.957 5.000 0.286 1.000   NA
 268831 268832 SpyM3_0129 SpyM3_0130   slo TRUE 0.858 24.000 0.125 1.000   NA
 268833 268834 SpyM3_0131 SpyM3_0132     FALSE 0.030 400.000 0.000 NA   NA
 268835 268836 SpyM3_0133 SpyM3_0134 metB leuS FALSE 0.036 211.000 0.000 1.000 N NA
 268836 268837 SpyM3_0134 SpyM3_0135 leuS   FALSE 0.035 307.000 0.000 1.000   NA
 268837 268838 SpyM3_0135 SpyM3_0136     TRUE 0.954 71.000 0.431 0.023   NA
 268838 268839 SpyM3_0136 SpyM3_0137     TRUE 0.868 123.000 0.279 0.017 Y NA
 268839 268840 SpyM3_0137 SpyM3_0138     TRUE 0.830 91.000 0.328 1.000 Y NA
 268840 268841 SpyM3_0138 SpyM3_0139     TRUE 0.989 5.000 0.536 1.000 Y NA
 268841 268842 SpyM3_0139 SpyM3_0140   araD TRUE 0.993 2.000 0.700 1.000 Y NA
 268842 268843 SpyM3_0140 SpyM3_0141 araD   FALSE 0.086 325.000 0.200 1.000 N NA
 268843 268844 SpyM3_0141 SpyM3_0142     FALSE 0.225 253.000 0.231 NA   NA
 268844 268845 SpyM3_0142 SpyM3_0143   opuAA FALSE 0.025 488.000 0.000 NA   NA
 268845 268846 SpyM3_0143 SpyM3_0144 opuAA opuABC TRUE 0.951 58.000 0.177 0.084 Y NA
 268846 268847 SpyM3_0144 SpyM3_0145 opuABC polA.1 FALSE 0.086 131.000 0.003 1.000 N NA
 268847 268848 SpyM3_0145 SpyM3_0146 polA.1   FALSE 0.126 187.000 0.005 NA   NA
 268848 268849 SpyM3_0146 SpyM3_0147   spf TRUE 0.666 52.000 0.010 NA   NA
 268851 268852 SpyM3_0149 SpyM3_0150 tgt   FALSE 0.077 218.000 0.004 1.000   NA
 268852 268853 SpyM3_0150 SpyM3_0151     TRUE 0.900 4.000 0.039 NA   NA
 268853 268854 SpyM3_0151 SpyM3_0152     FALSE 0.217 140.000 0.033 NA   NA
 268854 268855 SpyM3_0152 SpyM3_0153     TRUE 0.974 0.000 0.013 0.023   NA
 268857 268858 SpyM3_0155 SpyM3_0156 speG pgi FALSE 0.020 461.000 0.000 1.000   NA
 268859 268860 SpyM3_0157 SpyM3_0158     TRUE 0.987 3.000 0.667 NA   NA
 268862 268863 SpyM3_0160 SpyM3_0161 hasC.2 gpdA TRUE 0.565 33.000 0.007 1.000 N NA
 268864 268865 SpyM3_0162 SpyM3_0163     TRUE 0.917 -7.000 0.080 1.000 N NA
 268865 268866 SpyM3_0163 SpyM3_0164     TRUE 0.998 3.000 0.720 0.009 Y NA
 268866 268867 SpyM3_0164 SpyM3_0165     FALSE 0.253 118.000 0.010 NA   NA
 268867 268868 SpyM3_0165 SpyM3_0166   dut FALSE 0.274 110.000 0.005 NA   NA
 268868 268869 SpyM3_0166 SpyM3_0167 dut radA FALSE 0.329 81.000 0.028 1.000 N NA
 268869 268870 SpyM3_0167 SpyM3_0168 radA   FALSE 0.063 189.000 0.009 1.000 N NA
 268870 268871 SpyM3_0168 SpyM3_0169     TRUE 0.481 131.000 0.278 NA   NA
 268871 268872 SpyM3_0169 SpyM3_0170   gluS FALSE 0.137 183.000 0.008 NA   NA
 268872 268873 SpyM3_0170 SpyM3_0171 gluS   FALSE 0.012 395.000 0.000 1.000 N NA
 268873 268874 SpyM3_0171 SpyM3_0172     TRUE 0.993 -3.000 0.750 NA   NA
 268874 268875 SpyM3_0172 SpyM3_0173     TRUE 0.765 21.000 0.000 NA   NA
 268875 268876 SpyM3_0173 SpyM3_0174     TRUE 0.983 4.000 0.571 NA   NA
 268876 268877 SpyM3_0174 SpyM3_0175   rnpA FALSE 0.009 540.000 0.000 1.000 N NA
 268877 268878 SpyM3_0175 SpyM3_0176 rnpA   TRUE 0.903 -34.000 0.052 1.000 N NA
 268878 268879 SpyM3_0176 SpyM3_0177     TRUE 0.887 12.000 0.106 1.000   NA
 268879 268880 SpyM3_0177 SpyM3_0178   rpmH FALSE 0.038 315.000 0.002 1.000   NA
 268880 268881 SpyM3_0178 SpyM3_0179 rpmH   FALSE 0.043 274.000 0.000 1.000   NA
 268881 268882 SpyM3_0179 SpyM3_0180     TRUE 0.962 49.000 0.500 1.000 Y NA
 268882 268883 SpyM3_0180 SpyM3_0181     TRUE 0.452 76.000 0.000 NA   NA
 268883 268884 SpyM3_0181 SpyM3_0182     FALSE 0.358 125.000 0.133 NA   NA
 268884 268885 SpyM3_0182 SpyM3_0183     TRUE 0.998 13.000 1.000 0.041 Y NA
 268885 268886 SpyM3_0183 SpyM3_0184     FALSE 0.131 157.000 0.000 NA   NA
 268886 268887 SpyM3_0184 SpyM3_0185   nanH TRUE 0.809 12.000 0.000 NA   NA
 268887 268888 SpyM3_0185 SpyM3_0186 nanH   TRUE 0.798 22.000 0.108 1.000 N NA
 268890 268891 SpyM3_0188 SpyM3_0189     TRUE 0.978 -28.000 0.058 NA Y NA
 268891 268892 SpyM3_0189 SpyM3_0190   ksgA FALSE 0.253 114.000 0.093 1.000 N NA
 268892 268893 SpyM3_0190 SpyM3_0191 ksgA   FALSE 0.025 425.000 0.003 1.000   NA
 268893 268894 SpyM3_0191 SpyM3_0192   rpe TRUE 0.938 10.000 0.213 1.000   NA
 268894 268895 SpyM3_0192 SpyM3_0193 rpe   TRUE 0.946 -7.000 0.166 1.000 N NA
 268895 268896 SpyM3_0193 SpyM3_0194     TRUE 0.905 2.000 0.030 NA   NA
 268896 268897 SpyM3_0194 SpyM3_0195   cbf TRUE 0.942 -10.000 0.030 NA   NA
 268897 268898 SpyM3_0195 SpyM3_0196 cbf purR FALSE 0.081 267.000 0.052 1.000   NA
 268898 268899 SpyM3_0196 SpyM3_0197 purR prgA TRUE 0.937 -9.000 0.017 NA   NA
 268899 268900 SpyM3_0197 SpyM3_0198 prgA rpsL FALSE 0.120 208.000 0.012 NA   NA
 268900 268901 SpyM3_0198 SpyM3_0199 rpsL rpsG TRUE 0.989 21.000 0.224 0.006 Y NA
 268901 268902 SpyM3_0199 SpyM3_0200 rpsG fusA FALSE 0.321 485.000 0.579 1.000 Y NA
 268902 268903 SpyM3_0200 SpyM3_0201 fusA plr FALSE 0.015 341.000 0.000 1.000 N NA
 268904 268905 SpyM3_0202 SpyM3_0203     TRUE 0.996 -7.000 0.758 1.000 Y NA
 268906 268907 SpyM3_0204 SpyM3_0205   bacA TRUE 0.718 66.000 0.118 NA   NA
 268907 268908 SpyM3_0205 SpyM3_0206 bacA mecA FALSE 0.140 218.000 0.132 NA N NA
 268908 268909 SpyM3_0206 SpyM3_0207 mecA rgpG TRUE 0.823 58.000 0.267 NA N NA
 268909 268910 SpyM3_0207 SpyM3_0208 rgpG   FALSE 0.130 122.000 0.013 1.000 N NA
 268910 268911 SpyM3_0208 SpyM3_0209     TRUE 0.684 95.000 0.139 1.000 Y NA
 268911 268912 SpyM3_0209 SpyM3_0210     TRUE 0.951 31.000 0.606 1.000 N NA
 268912 268913 SpyM3_0210 SpyM3_0211     TRUE 0.971 -13.000 0.292 1.000 N NA
 268913 268914 SpyM3_0211 SpyM3_0212     TRUE 0.990 -7.000 0.152 0.002 N NA
 268915 268916 SpyM3_0213 SpyM3_0214   dacA TRUE 0.825 168.000 0.231 0.002 Y NA
 268917 268918 SpyM3_0215 SpyM3_0216 oppA oppB TRUE 0.961 65.000 0.273 0.041 Y NA
 268918 268919 SpyM3_0216 SpyM3_0217 oppB oppC TRUE 0.997 0.000 0.556 0.041 Y NA
 268919 268920 SpyM3_0217 SpyM3_0218 oppC oppD TRUE 0.990 9.000 0.650 1.000 Y NA
 268920 268921 SpyM3_0218 SpyM3_0219 oppD oppF TRUE 0.996 -7.000 0.095 0.001 Y NA
 268921 2179442 SpyM3_0219 SpyM3_r07 oppF   FALSE 0.019 994.000 0.000 NA   NA
 2179442 400250 SpyM3_r07 SpyM3_t42   tRNA-Ala TRUE 0.656 45.000 0.000 NA   NA
 400250 2179443 SpyM3_t42 SpyM3_r08 tRNA-Ala   FALSE 0.050 296.000 0.000 NA   NA
 2179443 2179444 SpyM3_r08 SpyM3_r16     FALSE 0.388 82.000 0.000 NA   NA
 2179444 400251 SpyM3_r16 SpyM3_t43   tRNA-Asn TRUE 0.839 6.000 0.000 NA   NA
 400251 400252 SpyM3_t43 SpyM3_t44 tRNA-Asn tRNA-Arg TRUE 0.414 80.000 0.000 NA   NA
 400252 268922 SpyM3_t44 SpyM3_0220 tRNA-Arg comX.1 FALSE 0.330 92.000 0.000 NA   NA
 268922 268923 SpyM3_0220 SpyM3_0221 comX.1   FALSE 0.022 610.000 0.000 NA   NA
 268923 268924 SpyM3_0221 SpyM3_0222     TRUE 0.914 -19.000 0.000 NA   NA
 268924 268925 SpyM3_0222 SpyM3_0223     FALSE 0.207 106.000 0.000 1.000   NA
 268925 268926 SpyM3_0223 SpyM3_0224     TRUE 0.985 0.000 0.555 1.000   NA
 268926 268927 SpyM3_0224 SpyM3_0225     TRUE 0.848 25.000 0.068 NA   NA
 268927 268928 SpyM3_0225 SpyM3_0226     TRUE 0.665 69.000 0.150 NA N NA
 268928 268929 SpyM3_0226 SpyM3_0227     TRUE 0.982 -3.000 0.199 1.000 Y NA
 268929 268930 SpyM3_0227 SpyM3_0228     TRUE 0.953 0.000 0.149 NA   NA
 268930 268931 SpyM3_0228 SpyM3_0229     TRUE 0.780 48.000 0.085 NA   NA
 268931 268932 SpyM3_0229 SpyM3_0230     FALSE 0.159 222.000 0.094 NA   NA
 268932 268933 SpyM3_0230 SpyM3_0231     FALSE 0.029 482.000 0.003 NA   NA
 268933 268934 SpyM3_0231 SpyM3_0232   atmA FALSE 0.097 203.000 0.000 NA   NA
 268934 268935 SpyM3_0232 SpyM3_0233 atmA atmB FALSE 0.025 324.000 0.000 NA N NA
 268935 268936 SpyM3_0233 SpyM3_0234 atmB atmD FALSE 0.160 250.000 0.000 NA Y NA
 268936 268937 SpyM3_0234 SpyM3_0235 atmD atmE TRUE 0.996 1.000 0.938 1.000 Y NA
 268940 268941 SpyM3_0238 SpyM3_0239     TRUE 0.996 10.000 0.490 0.004 Y NA
 268941 268942 SpyM3_0239 SpyM3_0240   gidB FALSE 0.344 69.000 0.006 1.000 N NA
 268943 268944 SpyM3_0241 SpyM3_0242 lemA htpX TRUE 0.873 47.000 0.222 NA   NA
 268944 268945 SpyM3_0242 SpyM3_0243 htpX   FALSE 0.083 234.000 0.002 NA   NA
 268945 268946 SpyM3_0243 SpyM3_0244   csrR FALSE 0.079 268.000 0.014 NA   NA
 268946 268947 SpyM3_0244 SpyM3_0245 csrR csrS TRUE 0.994 6.000 0.438 0.082 Y NA
 268947 268948 SpyM3_0245 SpyM3_0246 csrS   FALSE 0.067 215.000 0.007 NA N NA
 268948 268949 SpyM3_0246 SpyM3_0247   dnaB TRUE 0.944 -16.000 0.109 NA N NA
 268949 268950 SpyM3_0247 SpyM3_0248 dnaB dnaI TRUE 0.996 1.000 0.817 NA Y NA
 268950 268951 SpyM3_0248 SpyM3_0249 dnaI pgdA TRUE 0.537 63.000 0.008 1.000   NA
 268951 268952 SpyM3_0249 SpyM3_0250 pgdA snf FALSE 0.086 207.000 0.004 1.000   NA
 268952 268953 SpyM3_0250 SpyM3_0251 snf   FALSE 0.177 244.000 0.151 NA   NA
 268953 268954 SpyM3_0251 SpyM3_0252   murC.1 TRUE 0.737 40.000 0.013 NA   NA
 268954 268955 SpyM3_0252 SpyM3_0253 murC.1   TRUE 0.662 46.000 0.014 1.000   NA
 268955 268956 SpyM3_0253 SpyM3_0254     FALSE 0.387 118.000 0.120 NA   NA
 268956 268957 SpyM3_0254 SpyM3_0255   greA TRUE 0.644 73.000 0.079 NA   NA
 268958 268959 SpyM3_0256 SpyM3_0257     TRUE 0.511 82.000 0.154 1.000 N NA
 268960 268961 SpyM3_0258 SpyM3_0259     TRUE 0.585 66.000 0.043 1.000   NA
 268961 268962 SpyM3_0259 SpyM3_0260     TRUE 0.900 15.000 0.123 NA   NA
 268962 268963 SpyM3_0260 SpyM3_0261     FALSE 0.115 178.000 0.000 NA   NA
 268963 268964 SpyM3_0261 SpyM3_0262   glr FALSE 0.151 178.000 0.014 NA   NA
 268964 268965 SpyM3_0262 SpyM3_0263 glr   TRUE 0.874 -3.000 0.034 1.000 N NA
 268965 268966 SpyM3_0263 SpyM3_0264     TRUE 0.948 -21.000 0.085 1.000   NA
 268966 268967 SpyM3_0264 SpyM3_0265     TRUE 0.932 -3.000 0.065 1.000   NA
 268967 268968 SpyM3_0265 SpyM3_0266     TRUE 0.945 -3.000 0.111 1.000   NA
 268968 268969 SpyM3_0266 SpyM3_0267     TRUE 0.913 0.000 0.017 NA   NA
 268969 268970 SpyM3_0267 SpyM3_0268     TRUE 0.990 -3.000 0.570 NA   NA
 268970 268971 SpyM3_0268 SpyM3_0269     TRUE 0.421 120.000 0.224 NA N NA
 268971 268972 SpyM3_0269 SpyM3_0270     TRUE 0.925 -3.000 0.014 NA   NA
 268972 268973 SpyM3_0270 SpyM3_0271     FALSE 0.128 178.000 0.002 NA   NA
 268973 268974 SpyM3_0271 SpyM3_0272     FALSE 0.044 310.000 0.000 NA   NA
 268974 268975 SpyM3_0272 SpyM3_0273     TRUE 0.986 2.000 0.600 NA   NA
 268975 268976 SpyM3_0273 SpyM3_0274     FALSE 0.069 293.000 0.050 1.000   NA
 268976 268977 SpyM3_0274 SpyM3_0275     TRUE 0.938 39.000 0.408 NA   NA
 268977 268978 SpyM3_0275 SpyM3_0276   hlyX FALSE 0.219 133.000 0.023 NA   NA
 268978 268979 SpyM3_0276 SpyM3_0277 hlyX pflC TRUE 0.538 78.000 0.028 NA   NA
 268979 268980 SpyM3_0277 SpyM3_0278 pflC   FALSE 0.135 125.000 0.023 1.000 N NA
 268980 268981 SpyM3_0278 SpyM3_0279     TRUE 0.535 76.000 0.015 NA   NA
 268982 268983 SpyM3_0280 SpyM3_0281 fhuG.1 fhuB TRUE 0.999 -3.000 0.857 0.040 Y NA
 268983 268984 SpyM3_0281 SpyM3_0282 fhuB fhuD.1 TRUE 0.984 -10.000 0.179 1.000 Y NA
 268984 268985 SpyM3_0282 SpyM3_0283 fhuD.1 fhuC.1 TRUE 0.990 26.000 0.889 1.000 Y NA
 268985 268986 SpyM3_0283 SpyM3_0284 fhuC.1 murE FALSE 0.066 246.000 0.062 1.000 N NA
 268987 268988 SpyM3_0285 SpyM3_0286   upp FALSE 0.109 168.000 0.002 1.000   NA
 268988 268989 SpyM3_0286 SpyM3_0287 upp clpP.1 FALSE 0.047 223.000 0.010 1.000 N NA
 268989 268990 SpyM3_0287 SpyM3_0288 clpP.1   FALSE 0.045 492.000 0.065 NA   NA
 268990 268991 SpyM3_0288 SpyM3_0289   tmk FALSE 0.068 249.000 0.000 NA   NA
 268991 268992 SpyM3_0289 SpyM3_0290 tmk   TRUE 0.907 18.000 0.254 1.000 N NA
 268992 268993 SpyM3_0290 SpyM3_0291     FALSE 0.034 664.000 0.038 NA   NA
 268993 268994 SpyM3_0291 SpyM3_0292     TRUE 0.898 5.000 0.043 NA   NA
 268994 268995 SpyM3_0292 SpyM3_0293     TRUE 0.767 27.000 0.005 NA   NA
 268999 269000 SpyM3_0297 SpyM3_0298 lctO prtS FALSE 0.029 344.000 0.000 1.000   NA
 269000 269001 SpyM3_0298 SpyM3_0299 prtS   FALSE 0.020 748.000 0.000 NA   NA
 269001 269002 SpyM3_0299 SpyM3_0300   metS FALSE 0.071 243.000 0.000 NA   NA
 269002 269003 SpyM3_0300 SpyM3_0301 metS nrdF.2 FALSE 0.009 494.000 0.000 1.000 N NA
 269003 269004 SpyM3_0301 SpyM3_0302 nrdF.2 nrdI.2 TRUE 0.992 4.000 0.643 NA Y NA
 269004 269005 SpyM3_0302 SpyM3_0303 nrdI.2 nrdE.2 TRUE 0.998 -33.000 1.000 NA Y NA
 269007 269008 SpyM3_0305 SpyM3_0306     FALSE 0.105 191.000 0.000 NA   NA
 269010 269011 SpyM3_0308 SpyM3_0309     TRUE 0.993 -7.000 0.710 NA   NA
 269011 269012 SpyM3_0309 SpyM3_0310     TRUE 0.560 76.000 0.067 1.000   NA
 269012 269013 SpyM3_0310 SpyM3_0311   glpT FALSE 0.031 333.000 0.000 1.000   NA
 269013 269014 SpyM3_0311 SpyM3_0312 glpT glmU FALSE 0.059 173.000 0.002 1.000 N NA
 269014 269015 SpyM3_0312 SpyM3_0313 glmU   TRUE 0.620 31.000 0.015 1.000 N NA
 269015 269016 SpyM3_0313 SpyM3_0314     TRUE 0.917 0.000 0.025 NA   NA
 269016 269017 SpyM3_0314 SpyM3_0315   pfs TRUE 0.847 20.000 0.041 NA   NA
 269017 269018 SpyM3_0315 SpyM3_0316 pfs   FALSE 0.138 151.000 0.000 NA   NA
 269020 269021 SpyM3_0318 SpyM3_0319 mtsA mtsB TRUE 0.843 64.000 0.135 1.000 Y NA
 269021 269022 SpyM3_0319 SpyM3_0320 mtsB mtsC TRUE 0.968 1.000 0.130 1.000 Y NA
 269026 269027 SpyM3_0324 SpyM3_0325 rplK rplA TRUE 0.966 106.000 0.838 0.040 Y NA
 269027 269028 SpyM3_0325 SpyM3_0326 rplA pyrH FALSE 0.020 323.000 0.002 1.000 N NA
 269028 269029 SpyM3_0326 SpyM3_0327 pyrH rrf TRUE 0.953 30.000 0.626 1.000 N NA
 269029 269030 SpyM3_0327 SpyM3_0328 rrf   FALSE 0.075 238.000 0.012 1.000   NA
 269030 269031 SpyM3_0328 SpyM3_0329   msrA.2 TRUE 0.496 73.000 0.016 1.000   NA
 269031 269032 SpyM3_0329 SpyM3_0330 msrA.2   TRUE 0.937 -3.000 0.080 1.000   NA
 269032 269033 SpyM3_0330 SpyM3_0331     FALSE 0.150 156.000 0.023 1.000   NA
 269033 269034 SpyM3_0331 SpyM3_0332     FALSE 0.043 315.000 0.000 NA   NA
 269034 269035 SpyM3_0332 SpyM3_0333   phoH FALSE 0.056 297.000 0.004 NA   NA
 269035 269036 SpyM3_0333 SpyM3_0334 phoH   TRUE 0.565 46.000 0.005 NA N NA
 269036 269037 SpyM3_0334 SpyM3_0335     FALSE 0.189 129.000 0.003 NA   NA
 269037 269038 SpyM3_0335 SpyM3_0336   dgk TRUE 0.944 -19.000 0.035 NA   NA
 269038 269039 SpyM3_0336 SpyM3_0337 dgk era FALSE 0.272 120.000 0.063 1.000   NA
 269039 269040 SpyM3_0337 SpyM3_0338 era   TRUE 0.910 -25.000 0.007 1.000   NA
 269040 269041 SpyM3_0338 SpyM3_0339     FALSE 0.018 1466.000 0.000 NA   NA
 269041 269042 SpyM3_0339 SpyM3_0340     TRUE 0.959 13.000 0.333 NA   NA
 269042 269043 SpyM3_0340 SpyM3_0341     FALSE 0.036 361.000 0.000 NA   NA
 269043 269044 SpyM3_0341 SpyM3_0342     TRUE 0.956 50.000 0.667 NA   NA
 269044 269045 SpyM3_0342 SpyM3_0343     FALSE 0.019 849.000 0.000 NA   NA
 269045 269046 SpyM3_0343 SpyM3_0344     FALSE 0.324 93.000 0.000 NA   NA
 269048 269049 SpyM3_0346 SpyM3_0347 mutR fpg FALSE 0.109 172.000 0.004 1.000   NA
 269049 269050 SpyM3_0347 SpyM3_0348 fpg   TRUE 0.899 -3.000 0.066 1.000 N NA
 269050 269051 SpyM3_0348 SpyM3_0349     FALSE 0.082 190.000 0.000 1.000   NA
 269051 269052 SpyM3_0349 SpyM3_0350     FALSE 0.187 122.000 0.007 1.000   NA
 269052 269053 SpyM3_0350 SpyM3_0351     FALSE 0.233 189.000 0.007 0.066 N NA
 269053 269054 SpyM3_0351 SpyM3_0352   vacB FALSE 0.117 172.000 0.064 1.000 N NA
 269054 269055 SpyM3_0352 SpyM3_0353 vacB smpB TRUE 0.971 3.000 0.143 0.036 N NA
 269055 269056 SpyM3_0353 SpyM3_0354 smpB   TRUE 0.890 15.000 0.000 1.000 Y NA
 269057 269058 SpyM3_0355 SpyM3_0356 pcp   TRUE 0.894 50.000 0.300 NA   NA
 269058 269059 SpyM3_0356 SpyM3_0357     TRUE 0.994 0.000 0.939 NA   NA
 269059 269060 SpyM3_0357 SpyM3_0358     FALSE 0.090 211.000 0.000 NA   NA
 269060 269061 SpyM3_0358 SpyM3_0359   gloA FALSE 0.325 85.000 0.012 NA N NA
 269061 269062 SpyM3_0359 SpyM3_0360 gloA   TRUE 0.752 11.000 0.019 1.000 N NA
 269062 269063 SpyM3_0360 SpyM3_0361   pepQ TRUE 0.595 49.000 0.053 1.000 N NA
 269064 269065 SpyM3_0362 SpyM3_0363 ccpA   FALSE 0.130 131.000 0.033 1.000 N NA
 269065 269066 SpyM3_0363 SpyM3_0364     TRUE 0.996 2.000 0.413 0.011 Y NA
 269066 269067 SpyM3_0364 SpyM3_0365   thrS FALSE 0.011 422.000 0.000 1.000 N NA
 269067 269068 SpyM3_0365 SpyM3_0366 thrS   FALSE 0.152 141.000 0.012 1.000   NA
 269068 269069 SpyM3_0366 SpyM3_0367     TRUE 0.861 2.000 0.000 NA   NA
 269069 269070 SpyM3_0367 SpyM3_0368     TRUE 0.911 2.000 0.042 NA   NA
 269070 269071 SpyM3_0368 SpyM3_0369     FALSE 0.020 746.000 0.000 NA   NA
 269071 269072 SpyM3_0369 SpyM3_0370     TRUE 0.995 -43.000 0.576 1.000 Y NA
 269072 269073 SpyM3_0370 SpyM3_0371     TRUE 0.404 96.000 0.030 NA   NA
 269073 269074 SpyM3_0371 SpyM3_0372   vicR FALSE 0.163 162.000 0.013 NA   NA
 269074 269075 SpyM3_0372 SpyM3_0373 vicR vicK TRUE 0.998 -7.000 0.597 0.056 Y NA
 269075 269076 SpyM3_0373 SpyM3_0374 vicK vicX TRUE 0.877 4.000 0.038 1.000   NA
 269076 269077 SpyM3_0374 SpyM3_0375 vicX acpA FALSE 0.024 443.000 0.002 1.000   NA
 269077 269078 SpyM3_0375 SpyM3_0376 acpA smc TRUE 0.899 1.000 0.120 1.000 N NA
 269080 269081 SpyM3_0378 SpyM3_0379 aroE.2   TRUE 0.838 -3.000 0.000 NA N NA
 269081 269082 SpyM3_0379 SpyM3_0380     TRUE 0.861 2.000 0.000 NA   NA
 269082 269083 SpyM3_0380 SpyM3_0381     TRUE 0.910 -7.000 0.000 NA   NA
 269083 269084 SpyM3_0381 SpyM3_0382     TRUE 0.825 10.000 0.000 NA   NA
 269084 269085 SpyM3_0382 SpyM3_0383     TRUE 0.914 -16.000 0.000 NA   NA
 269085 269086 SpyM3_0383 SpyM3_0384     TRUE 0.595 55.000 0.000 NA   NA
 269086 269087 SpyM3_0384 SpyM3_0385     FALSE 0.021 692.000 0.000 NA   NA
 269087 269088 SpyM3_0385 SpyM3_0386     FALSE 0.165 118.000 0.000 1.000   NA
 269089 269090 SpyM3_0387 SpyM3_0388     TRUE 0.987 -10.000 0.400 NA   NA
 269090 269091 SpyM3_0388 SpyM3_0389     TRUE 0.900 -3.000 0.000 NA   NA
 269091 269092 SpyM3_0389 SpyM3_0390     TRUE 0.912 -9.000 0.000 NA   NA
 269092 269093 SpyM3_0390 SpyM3_0392     TRUE 0.982 0.000 0.429 NA   NA
 269094 269095 SpyM3_0391 SpyM3_0393     TRUE 0.590 56.000 0.000 NA   NA
 269095 269096 SpyM3_0393 SpyM3_0394     TRUE 0.972 0.000 0.273 NA   NA
 269096 269097 SpyM3_0394 SpyM3_0395     FALSE 0.026 455.000 0.000 NA   NA
 269097 269098 SpyM3_0395 SpyM3_0396     FALSE 0.228 114.000 0.000 NA   NA
 269099 269100 SpyM3_0397 SpyM3_0398     TRUE 0.977 48.000 0.333 0.064 Y NA
 269101 269102 SpyM3_0399 SpyM3_0400     TRUE 0.991 4.000 0.375 0.022   NA
 269102 269103 SpyM3_0400 SpyM3_0401   ftsY TRUE 0.962 0.000 0.007 0.079   NA
 269105 269106 SpyM3_0403 SpyM3_0404 bglG   TRUE 0.960 2.000 0.259 1.000   NA
 269106 269107 SpyM3_0404 SpyM3_0405   bglA.1 TRUE 0.970 19.000 0.318 1.000 Y NA
 269108 269109 SpyM3_0406 SpyM3_0407     TRUE 0.993 0.000 0.841 NA   NA
 269110 269111 SpyM3_0408 SpyM3_0409     FALSE 0.096 206.000 0.000 NA   NA
 269111 269112 SpyM3_0409 SpyM3_0410     TRUE 0.976 -58.000 0.215 NA   NA
 269112 269113 SpyM3_0410 SpyM3_0411     TRUE 0.664 64.000 0.051 NA   NA
 269113 269114 SpyM3_0411 SpyM3_0412   ptsK FALSE 0.145 305.000 0.017 NA Y NA
 269114 269115 SpyM3_0412 SpyM3_0413 ptsK lgt TRUE 0.981 -3.000 0.494 1.000 N NA
 269115 269116 SpyM3_0413 SpyM3_0414 lgt   TRUE 0.864 22.000 0.079 NA   NA
 269116 269117 SpyM3_0414 SpyM3_0415     TRUE 0.974 -7.000 0.206 NA   NA
 269119 269120 SpyM3_0417 SpyM3_0418     TRUE 0.896 102.000 0.156 0.004 Y NA
 269120 269121 SpyM3_0418 SpyM3_0419     FALSE 0.091 210.000 0.000 NA   NA
 269124 269125 SpyM3_0422 SpyM3_0423     FALSE 0.055 341.000 0.018 NA   NA
 269125 269126 SpyM3_0423 SpyM3_0424     TRUE 0.401 90.000 0.010 NA   NA
 269126 269127 SpyM3_0424 SpyM3_0425     FALSE 0.080 269.000 0.016 NA   NA
 269128 269129 SpyM3_0426 SpyM3_0427     TRUE 0.986 -16.000 0.375 NA   NA
 269130 269131 SpyM3_0428 SpyM3_0429   pepF TRUE 0.904 -7.000 0.059 1.000 N NA
 269132 269133 SpyM3_0430 SpyM3_0431 ppc ftsW FALSE 0.092 170.000 0.028 1.000 N NA
 269133 269134 SpyM3_0431 SpyM3_0432 ftsW tufA FALSE 0.014 355.000 0.000 1.000 N NA
 269134 269135 SpyM3_0432 SpyM3_0433 tufA tpi FALSE 0.036 241.000 0.003 1.000 N NA
 269136 269137 SpyM3_0434 SpyM3_0435 murN murM.1 TRUE 0.996 -13.000 0.200 0.011 Y NA
 269137 269138 SpyM3_0435 SpyM3_0436 murM.1   TRUE 0.983 0.000 0.500 1.000   NA
 269138 269139 SpyM3_0436 SpyM3_0437     FALSE 0.140 150.000 0.000 NA   NA
 269139 269140 SpyM3_0437 SpyM3_0438     TRUE 0.483 72.000 0.000 NA   NA
 269141 269142 SpyM3_0439 SpyM3_0440   pacL FALSE 0.076 230.000 0.000 NA   NA
 269143 269144 SpyM3_0441 SpyM3_0442 regR   TRUE 0.922 64.000 0.562 NA   NA
 269144 269145 SpyM3_0442 SpyM3_0443   agaD TRUE 0.786 87.000 0.375 NA   NA
 269145 269146 SpyM3_0443 SpyM3_0444 agaD agaW TRUE 0.999 -13.000 0.933 0.022 Y NA
 269146 269147 SpyM3_0444 SpyM3_0445 agaW agaV TRUE 0.997 19.000 0.933 0.022 Y NA
 269147 269148 SpyM3_0445 SpyM3_0446 agaV ugl TRUE 0.869 36.000 0.200 1.000   NA
 269148 269149 SpyM3_0446 SpyM3_0447 ugl agaF TRUE 0.936 0.000 0.120 1.000   NA
 269150 269151 SpyM3_0448 SpyM3_0449     TRUE 0.858 25.000 0.197 1.000 N NA
 269151 269152 SpyM3_0449 SpyM3_0450   kdgK TRUE 0.915 29.000 0.094 1.000 Y NA
 269152 269153 SpyM3_0450 SpyM3_0451 kdgK kgdA TRUE 0.967 5.000 0.167 1.000 Y NA
 269153 269154 SpyM3_0451 SpyM3_0452 kgdA   FALSE 0.140 297.000 0.000 0.049   NA
 269154 269155 SpyM3_0452 SpyM3_0453     FALSE 0.016 696.000 0.000 1.000   NA
 269155 269156 SpyM3_0453 SpyM3_0454   prfB FALSE 0.060 187.000 0.006 1.000 N NA
 269156 269157 SpyM3_0454 SpyM3_0455 prfB ftsE TRUE 0.753 19.000 0.053 1.000 N NA
 269157 269158 SpyM3_0455 SpyM3_0456 ftsE ftsX TRUE 0.992 -7.000 0.431 1.000 Y NA
 269160 269161 SpyM3_0458 SpyM3_0459   dinG FALSE 0.112 108.000 0.000 1.000 N NA
 269161 269162 SpyM3_0459 SpyM3_0460 dinG aspC FALSE 0.015 346.000 0.000 1.000 N NA
 269162 269163 SpyM3_0460 SpyM3_0461 aspC asnS TRUE 0.766 21.000 0.068 1.000 N NA
 269163 269164 SpyM3_0461 SpyM3_0462 asnS   FALSE 0.029 414.000 0.000 NA   NA
 269164 269165 SpyM3_0462 SpyM3_0463     TRUE 0.399 141.000 0.214 NA   NA
 269165 269166 SpyM3_0463 SpyM3_0464     TRUE 0.987 -3.000 0.470 NA   NA
 269166 269167 SpyM3_0464 SpyM3_0465   pepD FALSE 0.209 133.000 0.015 NA   NA
 269167 269168 SpyM3_0465 SpyM3_0466 pepD adcA FALSE 0.299 152.000 0.250 1.000 N NA
 269168 269169 SpyM3_0466 SpyM3_0467 adcA   FALSE 0.161 148.000 0.091 1.000 N NA
 269169 269170 SpyM3_0467 SpyM3_0468   agaS TRUE 0.864 20.000 0.178 1.000 N NA
 269171 269172 SpyM3_0469 SpyM3_0470 rpmE   FALSE 0.250 115.000 0.020 1.000   NA
 269173 269174 SpyM3_0471 SpyM3_0472 flaV   FALSE 0.191 175.000 0.167 1.000 N NA
 269174 269175 SpyM3_0472 SpyM3_0473     TRUE 0.922 -7.000 0.094 1.000 N NA
 269175 269176 SpyM3_0473 SpyM3_0474   rplS FALSE 0.131 115.000 0.006 1.000 N NA
 269176 400253 SpyM3_0474 SpyM3_t45 rplS tRNA-Arg FALSE 0.068 248.000 0.000 NA   NA
 400253 269177 SpyM3_t45 SpyM3_0475 tRNA-Arg   FALSE 0.021 697.000 0.000 NA   NA
 269177 269178 SpyM3_0475 SpyM3_0476   gyrB TRUE 0.876 1.000 0.013 1.000   NA
 269178 269179 SpyM3_0476 SpyM3_0477 gyrB   FALSE 0.020 368.000 0.011 1.000 N NA
 269181 269182 SpyM3_0479 SpyM3_0480 eno sagA FALSE 0.022 562.000 0.000 NA   NA
 269182 269183 SpyM3_0480 SpyM3_0481 sagA sagB FALSE 0.080 222.000 0.000 NA   NA
 269183 269184 SpyM3_0481 SpyM3_0482 sagB sagC TRUE 0.970 -3.000 0.200 NA   NA
 269184 269185 SpyM3_0482 SpyM3_0483 sagC   TRUE 0.948 20.000 0.318 NA   NA
 269185 269186 SpyM3_0483 SpyM3_0484     TRUE 0.965 -25.000 0.136 NA   NA
 269186 269187 SpyM3_0484 SpyM3_0485     TRUE 0.993 -3.000 0.750 NA   NA
 269187 269188 SpyM3_0485 SpyM3_0486     TRUE 0.979 23.000 0.750 NA   NA
 269188 269189 SpyM3_0486 SpyM3_0487   sagH TRUE 0.967 9.000 0.500 1.000 N NA
 269189 269190 SpyM3_0487 SpyM3_0488 sagH   TRUE 0.995 -3.000 0.160 0.008 Y NA
 269190 269191 SpyM3_0488 SpyM3_0489     FALSE 0.017 571.000 0.000 1.000   NA
 269191 269192 SpyM3_0489 SpyM3_0490     FALSE 0.055 278.000 0.000 NA   NA
 269192 269193 SpyM3_0490 SpyM3_0491   lig FALSE 0.128 195.000 0.010 NA   NA
 269193 269194 SpyM3_0491 SpyM3_0492 lig   TRUE 0.703 14.000 0.013 1.000 N NA
 269194 269195 SpyM3_0492 SpyM3_0493     FALSE 0.023 392.000 0.000 1.000   NA
 269195 269196 SpyM3_0493 SpyM3_0494     TRUE 0.966 35.000 0.189 0.009   NA
 269196 269197 SpyM3_0494 SpyM3_0495     TRUE 0.978 18.000 0.032 0.009 Y NA
 269197 269198 SpyM3_0495 SpyM3_0496     TRUE 0.995 0.000 0.222 0.009 Y NA
 269198 269199 SpyM3_0496 SpyM3_0497     TRUE 0.998 16.000 0.864 0.009 Y NA
 269199 269200 SpyM3_0497 SpyM3_0498     TRUE 0.997 16.000 0.846 0.009 Y NA
 269200 269201 SpyM3_0498 SpyM3_0499     TRUE 0.927 162.000 0.724 0.009 Y NA
 269201 269202 SpyM3_0499 SpyM3_0500     TRUE 0.998 13.000 0.837 0.009 Y NA
 269202 269203 SpyM3_0500 SpyM3_0501     FALSE 0.093 266.000 0.039 NA   NA
 269203 269204 SpyM3_0501 SpyM3_0502   murA TRUE 0.841 65.000 0.279 NA   NA
 269204 269205 SpyM3_0502 SpyM3_0503 murA   TRUE 0.928 4.000 0.110 NA   NA
 269205 269206 SpyM3_0503 SpyM3_0504   endA TRUE 0.689 36.000 0.000 NA   NA
 269206 269207 SpyM3_0504 SpyM3_0505 endA endA TRUE 0.982 -13.000 0.000 0.006   NA
 269207 269208 SpyM3_0505 SpyM3_0506 endA pheS FALSE 0.041 283.000 0.000 1.000   NA
 269208 269209 SpyM3_0506 SpyM3_0507 pheS pheT TRUE 0.856 255.000 0.574 0.001 Y NA
 269209 269210 SpyM3_0507 SpyM3_0508 pheT   FALSE 0.129 110.000 0.002 1.000 N NA
 269210 269211 SpyM3_0508 SpyM3_0509     TRUE 0.924 -7.000 0.006 NA   NA
 269211 269212 SpyM3_0509 SpyM3_0510     TRUE 0.660 73.000 0.095 NA   NA
 269212 269213 SpyM3_0510 SpyM3_0511     TRUE 0.970 10.000 0.444 1.000   NA
 269215 269216 SpyM3_0513 SpyM3_0514 rexB rexA TRUE 0.991 -39.000 0.070 0.063 Y NA
 269216 269217 SpyM3_0514 SpyM3_0515 rexA   FALSE 0.063 140.000 0.000 1.000 N NA
 269217 269218 SpyM3_0515 SpyM3_0516   rpsU FALSE 0.172 141.000 0.027 1.000   NA
 269220 269221 SpyM3_0518 SpyM3_0519 dnaG rpoD TRUE 0.918 9.000 0.209 1.000 N NA
 269221 269222 SpyM3_0519 SpyM3_0520 rpoD   FALSE 0.117 236.000 0.044 NA   NA
 269222 269223 SpyM3_0520 SpyM3_0521   rmlD FALSE 0.339 138.000 0.152 NA   NA
 269223 269224 SpyM3_0521 SpyM3_0522 rmlD rgpAc TRUE 0.630 119.000 0.212 1.000 Y NA
 269224 269225 SpyM3_0522 SpyM3_0523 rgpAc rgpBc TRUE 0.982 -10.000 0.289 NA   NA
 269225 269226 SpyM3_0523 SpyM3_0524 rgpBc rgpCc TRUE 0.967 3.000 0.289 NA   NA
 269226 269227 SpyM3_0524 SpyM3_0525 rgpCc rgpDc TRUE 0.738 0.000 0.000 1.000 N NA
 269227 269228 SpyM3_0525 SpyM3_0526 rgpDc rgpEc TRUE 0.744 25.000 0.000 NA   NA
 269228 269229 SpyM3_0526 SpyM3_0527 rgpEc rgpFc TRUE 0.984 -3.000 0.385 NA   NA
 269229 269230 SpyM3_0527 SpyM3_0528 rgpFc   TRUE 0.960 -3.000 0.000 NA Y NA
 269230 269231 SpyM3_0528 SpyM3_0529     FALSE 0.253 179.000 0.000 NA Y NA
 269231 269232 SpyM3_0529 SpyM3_0530     TRUE 0.985 2.000 0.568 NA   NA
 269232 269233 SpyM3_0530 SpyM3_0531     TRUE 0.939 -7.000 0.027 NA   NA
 269233 269234 SpyM3_0531 SpyM3_0532     TRUE 0.972 -19.000 0.182 NA   NA
 269234 269235 SpyM3_0532 SpyM3_0533   pepT FALSE 0.318 94.000 0.000 NA   NA
 269235 269236 SpyM3_0533 SpyM3_0534 pepT   TRUE 0.777 41.000 0.051 NA   NA
 269238 269239 SpyM3_0536 SpyM3_0537   cmk TRUE 0.791 15.000 0.012 1.000   NA
 269239 269240 SpyM3_0537 SpyM3_0538 cmk infC FALSE 0.077 162.000 0.010 1.000 N NA
 269240 269241 SpyM3_0538 SpyM3_0539 infC rpmI TRUE 0.977 42.000 0.652 1.000 Y NA
 269241 269242 SpyM3_0539 SpyM3_0540 rpmI rplT TRUE 0.993 59.000 0.928 0.028 Y NA
 269244 269245 SpyM3_0542 SpyM3_0543   aroD TRUE 0.948 -3.000 0.125 1.000   NA
 269245 269246 SpyM3_0543 SpyM3_0544 aroD aroF TRUE 0.853 94.000 0.004 0.003 Y NA
 269246 269247 SpyM3_0544 SpyM3_0545 aroF   TRUE 0.596 61.000 0.005 NA   NA
 269247 269248 SpyM3_0545 SpyM3_0546   gor FALSE 0.102 221.000 0.010 NA   NA
 269249 269250 SpyM3_0547 SpyM3_0548 folC.2   TRUE 0.933 30.000 0.308 NA   NA
 269251 269252 SpyM3_0549 SpyM3_0550 nifS thiI TRUE 0.783 72.000 0.349 1.000 N NA
 269252 269253 SpyM3_0550 SpyM3_0551 thiI   FALSE 0.094 149.000 0.014 1.000 N NA
 269253 269254 SpyM3_0551 SpyM3_0552   rplU FALSE 0.036 214.000 0.000 1.000 N NA
 269254 269255 SpyM3_0552 SpyM3_0553 rplU   TRUE 0.970 12.000 0.208 NA Y NA
 269255 269256 SpyM3_0553 SpyM3_0554   rpmA TRUE 0.953 28.000 0.203 NA Y NA
 269256 269257 SpyM3_0554 SpyM3_0555 rpmA   FALSE 0.014 358.000 0.000 1.000 N NA
 269257 269258 SpyM3_0555 SpyM3_0556   lsp TRUE 0.923 -3.000 0.119 1.000 N NA
 269258 269259 SpyM3_0556 SpyM3_0557 lsp   TRUE 0.920 -10.000 0.082 1.000 N NA
 269259 269260 SpyM3_0557 SpyM3_0558   pyrR FALSE 0.026 395.000 0.048 1.000 N NA
 269260 269261 SpyM3_0558 SpyM3_0559 pyrR pyrP TRUE 0.858 61.000 0.140 1.000 Y NA
 269261 269262 SpyM3_0559 SpyM3_0560 pyrP pyrB TRUE 0.819 61.000 0.064 1.000 Y NA
 269262 269263 SpyM3_0560 SpyM3_0561 pyrB carA TRUE 0.844 44.000 0.014 1.000 Y NA
 269263 269264 SpyM3_0561 SpyM3_0562 carA carB TRUE 0.635 246.000 0.117 0.001 Y NA
 269264 269265 SpyM3_0562 SpyM3_0563 carB   FALSE 0.066 206.000 0.017 1.000 N NA
 269265 269266 SpyM3_0563 SpyM3_0564     TRUE 0.977 24.000 0.923 1.000 N NA
 269266 269267 SpyM3_0564 SpyM3_0565     TRUE 0.993 12.000 0.923 1.000 Y NA
 269267 269268 SpyM3_0565 SpyM3_0566     FALSE 0.026 254.000 0.000 1.000 N NA
 269268 269269 SpyM3_0566 SpyM3_0567   rpsP FALSE 0.092 127.000 0.003 1.000 N NA
 269269 269270 SpyM3_0567 SpyM3_0568 rpsP   TRUE 0.965 10.000 0.385 1.000   NA
 269270 269271 SpyM3_0568 SpyM3_0569     FALSE 0.014 960.000 0.000 1.000   NA
 269271 269272 SpyM3_0569 SpyM3_0570     TRUE 0.910 20.000 0.200 1.000   NA
 269274 269275 SpyM3_0572 SpyM3_0573   rimM FALSE 0.035 215.000 0.000 1.000 N NA
 269275 269276 SpyM3_0573 SpyM3_0574 rimM trmD TRUE 0.996 -10.000 0.672 1.000 Y NA
 269276 269277 SpyM3_0574 SpyM3_0575 trmD   TRUE 0.798 0.000 0.007 1.000 N NA
 269277 269278 SpyM3_0575 SpyM3_0576     FALSE 0.190 178.000 0.059 NA   NA
 269278 269279 SpyM3_0576 SpyM3_0577   apbA TRUE 0.959 13.000 0.333 NA   NA
 269279 269280 SpyM3_0577 SpyM3_0578 apbA fruR FALSE 0.025 256.000 0.000 1.000 N NA
 269280 269281 SpyM3_0578 SpyM3_0579 fruR fruK TRUE 0.859 120.000 0.721 1.000 Y NA
 269281 269282 SpyM3_0579 SpyM3_0580 fruK fruA TRUE 0.996 -3.000 0.816 1.000 Y NA
 269282 269283 SpyM3_0580 SpyM3_0581 fruA   FALSE 0.224 99.000 0.022 1.000 N NA
 269283 269284 SpyM3_0581 SpyM3_0582     TRUE 0.795 227.000 0.333 0.002 Y NA
 269286 269287 SpyM3_0584 SpyM3_0585     FALSE 0.060 228.000 0.000 1.000   NA
 269287 269288 SpyM3_0585 SpyM3_0586     TRUE 0.951 0.000 0.139 NA   NA
 269288 269289 SpyM3_0586 SpyM3_0587   papS FALSE 0.217 125.000 0.009 NA   NA
 269289 269290 SpyM3_0587 SpyM3_0588 papS   TRUE 0.928 -3.000 0.056 1.000   NA
 269290 269291 SpyM3_0588 SpyM3_0589     FALSE 0.024 504.000 0.000 NA   NA
 269291 269292 SpyM3_0589 SpyM3_0590   fms FALSE 0.064 256.000 0.000 NA   NA
 269294 269295 SpyM3_0592 SpyM3_0593     TRUE 0.988 3.000 0.800 1.000   NA
 269295 269296 SpyM3_0593 SpyM3_0594     TRUE 0.988 9.000 0.533 1.000 Y NA
 269296 269297 SpyM3_0594 SpyM3_0595   mvaK1 FALSE 0.020 294.000 0.000 1.000 N NA
 269297 269298 SpyM3_0595 SpyM3_0596 mvaK1 mvaD TRUE 0.977 63.000 0.281 0.003 Y NA
 269298 269299 SpyM3_0596 SpyM3_0597 mvaD mvaK2 TRUE 0.997 -7.000 0.312 0.005 Y NA
 269299 269300 SpyM3_0597 SpyM3_0598 mvaK2   TRUE 0.924 -7.000 0.097 1.000 N NA
 269301 269302 SpyM3_0599 SpyM3_0600 mvaS.1 mvaS.2 TRUE 0.984 -13.000 0.183 1.000 Y NA
 269303 269304 SpyM3_0601 SpyM3_0602 thyA dyr TRUE 0.692 80.000 0.295 1.000 N NA
 269304 269305 SpyM3_0602 SpyM3_0603 dyr   TRUE 0.838 20.000 0.030 NA   NA
 269305 269306 SpyM3_0603 SpyM3_0604   clpX FALSE 0.209 130.000 0.012 NA   NA
 269306 269307 SpyM3_0604 SpyM3_0605 clpX   TRUE 0.861 10.000 0.043 1.000   NA
 269307 269308 SpyM3_0605 SpyM3_0606     FALSE 0.162 148.000 0.004 NA   NA
 269310 269311 SpyM3_0608 SpyM3_0609 rpiA deoB TRUE 0.697 77.000 0.018 1.000 Y NA
 269311 269312 SpyM3_0609 SpyM3_0610 deoB arsC TRUE 0.812 19.000 0.108 1.000 N NA
 269312 269313 SpyM3_0610 SpyM3_0611 arsC punA TRUE 0.931 -16.000 0.108 1.000 N NA
 269313 269314 SpyM3_0611 SpyM3_0612 punA deoD2 FALSE 0.266 771.000 0.040 0.001 Y NA
 269314 269315 SpyM3_0612 SpyM3_0613 deoD2   FALSE 0.318 128.000 0.107 NA   NA
 269317 269318 SpyM3_0615 SpyM3_0616   pyrF FALSE 0.056 277.000 0.000 NA   NA
 269318 269319 SpyM3_0616 SpyM3_0617 pyrF pyrE TRUE 0.863 58.000 0.133 1.000 Y NA
 269319 269320 SpyM3_0617 SpyM3_0618 pyrE amiC FALSE 0.041 197.000 0.000 1.000 N NA
 269320 269321 SpyM3_0618 SpyM3_0619 amiC   FALSE 0.337 118.000 0.182 1.000 N NA
 269321 269322 SpyM3_0619 SpyM3_0620     TRUE 0.973 29.000 0.125 0.037 Y NA
 269322 269323 SpyM3_0620 SpyM3_0621   ung FALSE 0.120 133.000 0.025 1.000 N NA
 269323 269324 SpyM3_0621 SpyM3_0622 ung pyrC FALSE 0.098 132.000 0.009 1.000 N NA
 269326 269327 SpyM3_0624 SpyM3_0625 parE parC TRUE 0.973 91.000 0.552 0.003 Y NA
 269327 269328 SpyM3_0625 SpyM3_0626 parC bcaT FALSE 0.218 120.000 0.086 1.000 N NA
 269328 269329 SpyM3_0626 SpyM3_0627 bcaT   TRUE 0.714 64.000 0.095 NA   NA
 269329 400254 SpyM3_0627 SpyM3_t46   tRNA-Tyr TRUE 0.557 61.000 0.000 NA   NA
 400254 400255 SpyM3_t46 SpyM3_t47 tRNA-Tyr tRNA-Gln TRUE 0.471 73.000 0.000 NA   NA
 400255 269330 SpyM3_t47 SpyM3_0628 tRNA-Gln   FALSE 0.185 124.000 0.000 NA   NA
 269330 400256 SpyM3_0628 SpyM3_t48   tRNA-Arg FALSE 0.232 113.000 0.000 NA   NA
 269332 269333 SpyM3_0630 SpyM3_0631     FALSE 0.044 311.000 0.000 NA   NA
 269333 269334 SpyM3_0631 SpyM3_0632     TRUE 0.650 59.000 0.056 1.000   NA
 269336 269337 SpyM3_0634 SpyM3_0635 miaA hflX FALSE 0.155 154.000 0.027 1.000   NA
 269337 269338 SpyM3_0635 SpyM3_0636 hflX   TRUE 0.916 -7.000 0.014 1.000   NA
 269338 269339 SpyM3_0636 SpyM3_0637     TRUE 0.812 15.000 0.022 1.000   NA
 269339 269340 SpyM3_0637 SpyM3_0638     TRUE 0.923 0.000 0.074 1.000   NA
 269340 269341 SpyM3_0638 SpyM3_0639   recJ TRUE 0.909 -3.000 0.016 1.000   NA
 269341 269342 SpyM3_0639 SpyM3_0640 recJ apt FALSE 0.184 150.000 0.128 1.000 N NA
 269342 269343 SpyM3_0640 SpyM3_0641 apt   FALSE 0.323 81.000 0.005 NA N NA
 269343 269344 SpyM3_0641 SpyM3_0642   nth TRUE 0.965 -3.000 0.007 NA Y NA
 269344 269345 SpyM3_0642 SpyM3_0643 nth   TRUE 0.531 72.000 0.006 NA   NA
 269345 269346 SpyM3_0643 SpyM3_0644     TRUE 0.981 -10.000 0.283 NA   NA
 269346 269347 SpyM3_0644 SpyM3_0645     TRUE 0.754 40.000 0.021 NA   NA
 269347 269348 SpyM3_0645 SpyM3_0646   rmlA TRUE 0.560 58.000 0.059 1.000 N NA
 269348 269349 SpyM3_0646 SpyM3_0647 rmlA rmlC TRUE 0.974 0.000 0.149 1.000 Y NA
 269349 269350 SpyM3_0647 SpyM3_0648 rmlC rmlB TRUE 0.443 244.000 0.350 1.000 Y NA
 269350 269351 SpyM3_0648 SpyM3_0649 rmlB mutX FALSE 0.033 221.000 0.000 1.000 N NA
 269351 269352 SpyM3_0649 SpyM3_0650 mutX   TRUE 0.730 58.000 0.074 NA   NA
 269352 269353 SpyM3_0650 SpyM3_0651     TRUE 0.983 -10.000 0.324 NA   NA
 269355 269356 SpyM3_0653 SpyM3_0654     TRUE 0.913 -49.000 0.000 NA   NA
 269356 269357 SpyM3_0654 SpyM3_0655     FALSE 0.117 176.000 0.000 NA   NA
 269357 269358 SpyM3_0655 SpyM3_0656     TRUE 0.994 -3.000 0.895 1.000   NA
 269358 269359 SpyM3_0656 SpyM3_0657     FALSE 0.113 204.000 0.026 1.000   NA
 269359 269360 SpyM3_0657 SpyM3_0658   estA FALSE 0.336 133.000 0.143 NA   NA
 269360 269361 SpyM3_0658 SpyM3_0659 estA   TRUE 0.878 30.000 0.150 NA   NA
 269361 269362 SpyM3_0659 SpyM3_0660     TRUE 0.735 46.000 0.029 NA   NA
 269362 269363 SpyM3_0660 SpyM3_0661   acoA FALSE 0.041 285.000 0.000 1.000   NA
 269363 269364 SpyM3_0661 SpyM3_0662 acoA acoB TRUE 0.994 56.000 0.769 0.001 Y NA
 269364 269365 SpyM3_0662 SpyM3_0663 acoB acoC TRUE 0.571 185.000 0.077 0.048 Y NA
 269365 269366 SpyM3_0663 SpyM3_0664 acoC acoL FALSE 0.085 331.000 0.000 1.000 Y NA
 269369 269370 SpyM3_0667 SpyM3_0668 cobQ murC TRUE 0.991 0.000 0.796 1.000   NA
 269371 269372 SpyM3_0669 SpyM3_0670     TRUE 0.989 -3.000 0.502 NA   NA
 269372 269373 SpyM3_0670 SpyM3_0671     FALSE 0.203 219.000 0.150 NA   NA
 269373 269374 SpyM3_0671 SpyM3_0672     FALSE 0.205 124.000 0.003 NA   NA
 269374 269375 SpyM3_0672 SpyM3_0673   hemN TRUE 0.939 -33.000 0.021 NA   NA
 269375 269376 SpyM3_0673 SpyM3_0674 hemN   TRUE 0.816 10.000 0.060 1.000 N NA
 269376 269377 SpyM3_0674 SpyM3_0675     TRUE 0.869 0.000 0.055 1.000 N NA
 269377 269378 SpyM3_0675 SpyM3_0676     TRUE 0.976 0.000 0.330 NA   NA
 269378 269379 SpyM3_0676 SpyM3_0677     FALSE 0.052 287.000 0.000 NA   NA
 269379 269380 SpyM3_0677 SpyM3_0678     TRUE 0.987 0.000 0.546 NA   NA
 269380 269381 SpyM3_0678 SpyM3_0679     TRUE 0.988 12.000 0.876 NA   NA
 269381 269382 SpyM3_0679 SpyM3_0680     TRUE 0.979 -10.000 0.253 NA   NA
 269383 269384 SpyM3_0681 SpyM3_0682     FALSE 0.124 311.000 0.000 0.061   NA
 269384 269385 SpyM3_0682 SpyM3_0683     TRUE 0.816 11.000 0.000 NA   NA
 269385 269386 SpyM3_0683 SpyM3_0684     TRUE 0.847 4.000 0.000 NA   NA
 269387 269388 SpyM3_0685 SpyM3_0686     TRUE 0.697 35.000 0.000 NA   NA
 269388 269389 SpyM3_0686 SpyM3_0687     FALSE 0.019 879.000 0.000 NA   NA
 269389 269390 SpyM3_0687 SpyM3_0688     TRUE 0.857 74.000 0.400 NA   NA
 269390 269391 SpyM3_0688 SpyM3_0689     FALSE 0.324 93.000 0.000 NA   NA
 269391 269392 SpyM3_0689 SpyM3_0690     FALSE 0.050 296.000 0.000 NA   NA
 269392 269393 SpyM3_0690 SpyM3_0691     TRUE 0.910 -7.000 0.000 NA   NA
 269393 269394 SpyM3_0691 SpyM3_0692     FALSE 0.045 309.000 0.000 NA   NA
 269394 269395 SpyM3_0692 SpyM3_0693     TRUE 0.881 0.000 0.000 NA   NA
 269395 269396 SpyM3_0693 SpyM3_0694     TRUE 0.793 14.000 0.000 NA   NA
 269396 269397 SpyM3_0694 SpyM3_0695     TRUE 0.979 17.000 0.667 NA   NA
 269397 269398 SpyM3_0695 SpyM3_0696     TRUE 0.900 -3.000 0.000 NA   NA
 269398 269399 SpyM3_0696 SpyM3_0697     TRUE 0.861 2.000 0.000 NA   NA
 269399 269400 SpyM3_0697 SpyM3_0698     TRUE 0.842 5.000 0.000 NA   NA
 269400 269401 SpyM3_0698 SpyM3_0699     TRUE 0.914 -34.000 0.000 NA   NA
 269401 269402 SpyM3_0699 SpyM3_0700     TRUE 0.787 15.000 0.000 NA   NA
 269402 269403 SpyM3_0700 SpyM3_0701     TRUE 0.900 -3.000 0.000 NA   NA
 269403 269404 SpyM3_0701 SpyM3_0702     TRUE 0.861 2.000 0.000 NA   NA
 269404 269405 SpyM3_0702 SpyM3_0703     FALSE 0.276 102.000 0.000 NA   NA
 269405 269406 SpyM3_0703 SpyM3_0704     FALSE 0.100 160.000 0.000 1.000   NA
 269406 269407 SpyM3_0704 SpyM3_0705     FALSE 0.133 154.000 0.000 NA   NA
 269407 269408 SpyM3_0705 SpyM3_0706     TRUE 0.576 58.000 0.000 NA   NA
 269408 269409 SpyM3_0706 SpyM3_0707     TRUE 0.739 26.000 0.000 NA   NA
 269409 269410 SpyM3_0707 SpyM3_0708     TRUE 0.739 26.000 0.000 NA   NA
 269410 269411 SpyM3_0708 SpyM3_0709     TRUE 0.484 141.000 0.312 NA   NA
 269411 269412 SpyM3_0709 SpyM3_0710     TRUE 0.964 13.000 0.385 NA   NA
 269412 269413 SpyM3_0710 SpyM3_0711     FALSE 0.033 368.000 0.000 NA   NA
 269413 269414 SpyM3_0711 SpyM3_0712     TRUE 0.914 -19.000 0.000 NA   NA
 269414 269415 SpyM3_0712 SpyM3_0713     TRUE 0.780 17.000 0.000 NA   NA
 269415 269416 SpyM3_0713 SpyM3_0714     TRUE 0.793 14.000 0.000 NA   NA
 269416 269417 SpyM3_0714 SpyM3_0715     TRUE 0.881 0.000 0.000 NA   NA
 269417 269418 SpyM3_0715 SpyM3_0716     TRUE 0.910 -7.000 0.000 NA   NA
 269418 269419 SpyM3_0716 SpyM3_0717     TRUE 0.976 2.000 0.375 NA   NA
 269419 269420 SpyM3_0717 SpyM3_0718     TRUE 0.988 -7.000 0.444 NA   NA
 269420 269421 SpyM3_0718 SpyM3_0719     TRUE 0.980 12.000 0.615 NA   NA
 269421 269422 SpyM3_0719 SpyM3_0720     TRUE 0.662 93.000 0.231 NA   NA
 269424 269425 SpyM3_0722 SpyM3_0723     TRUE 0.752 13.000 0.000 1.000   NA
 269425 269426 SpyM3_0723 SpyM3_0724     TRUE 0.900 -3.000 0.000 NA   NA
 269426 269427 SpyM3_0724 SpyM3_0725   hylP.1 TRUE 0.900 -3.000 0.000 NA   NA
 269427 269428 SpyM3_0725 SpyM3_0726 hylP.1   TRUE 0.825 10.000 0.000 NA   NA
 269428 269429 SpyM3_0726 SpyM3_0727     TRUE 0.809 12.000 0.000 NA   NA
 269429 269430 SpyM3_0727 SpyM3_0728     TRUE 0.853 3.000 0.000 NA   NA
 269430 269431 SpyM3_0728 SpyM3_0729     TRUE 0.809 12.000 0.000 NA   NA
 269431 269432 SpyM3_0729 SpyM3_0730     TRUE 0.900 -3.000 0.000 NA   NA
 269432 269433 SpyM3_0730 SpyM3_0731     FALSE 0.218 116.000 0.000 NA   NA
 269434 269435 SpyM3_0732 SpyM3_0733     TRUE 0.576 58.000 0.000 NA   NA
 269435 269436 SpyM3_0733 SpyM3_0734     FALSE 0.061 264.000 0.000 NA   NA
 269436 269437 SpyM3_0734 SpyM3_0735     FALSE 0.148 141.000 0.000 NA   NA
 269438 269439 SpyM3_0736 SpyM3_0737   lepA FALSE 0.014 1134.000 0.000 1.000   NA
 269439 269440 SpyM3_0737 SpyM3_0738 lepA sclB FALSE 0.084 187.000 0.000 1.000   NA
 269440 269441 SpyM3_0738 SpyM3_0739 sclB csrA FALSE 0.105 153.000 0.000 1.000   NA
 269441 269442 SpyM3_0739 SpyM3_0740 csrA   FALSE 0.131 130.000 0.000 1.000   NA
 269442 269443 SpyM3_0740 SpyM3_0741     FALSE 0.073 207.000 0.000 1.000   NA
 269443 269444 SpyM3_0741 SpyM3_0742     TRUE 0.996 27.000 0.786 0.020 Y NA
 269444 269445 SpyM3_0742 SpyM3_0743     TRUE 0.933 146.000 0.778 0.024 Y NA
 269445 269446 SpyM3_0743 SpyM3_0744     TRUE 0.999 -3.000 0.778 0.024 Y NA
 269446 269447 SpyM3_0744 SpyM3_0745     TRUE 0.562 136.000 0.222 0.060 N NA
 269447 269448 SpyM3_0745 SpyM3_0746     TRUE 0.997 4.000 0.500 0.012 Y NA
 269448 269449 SpyM3_0746 SpyM3_0747     TRUE 0.986 -6.000 0.571 1.000 N NA
 269449 269450 SpyM3_0747 SpyM3_0748     FALSE 0.103 113.000 0.000 1.000 N NA
 269450 269451 SpyM3_0748 SpyM3_0749   uvrC FALSE 0.071 130.000 0.000 1.000 N NA
 269451 269452 SpyM3_0749 SpyM3_0750 uvrC   FALSE 0.058 184.000 0.004 1.000 N NA
 269452 269453 SpyM3_0750 SpyM3_0751     FALSE 0.295 125.000 0.179 1.000 N NA
 269455 269456 SpyM3_0753 SpyM3_0754 rplJ rplL TRUE 0.991 65.000 0.884 0.027 Y NA
 269456 269457 SpyM3_0754 SpyM3_0755 rplL   FALSE 0.032 227.000 0.000 1.000 N NA
 269459 269460 SpyM3_0757 SpyM3_0758   folC.1 FALSE 0.343 90.000 0.000 NA   NA
 269460 269461 SpyM3_0758 SpyM3_0759 folC.1 folE TRUE 0.925 17.000 0.057 1.000 Y NA
 269461 269462 SpyM3_0759 SpyM3_0760 folE folP TRUE 0.949 9.000 0.073 1.000 Y NA
 269462 269463 SpyM3_0760 SpyM3_0761 folP folQ TRUE 0.954 7.000 0.094 1.000 Y NA
 269463 269464 SpyM3_0761 SpyM3_0762 folQ folK TRUE 0.977 -3.000 0.142 1.000 Y NA
 269464 269465 SpyM3_0762 SpyM3_0763 folK murB FALSE 0.077 162.000 0.010 1.000 N NA
 269465 269466 SpyM3_0763 SpyM3_0764 murB potA TRUE 0.597 46.000 0.041 1.000 N NA
 269466 269467 SpyM3_0764 SpyM3_0765 potA potB TRUE 0.999 -16.000 0.928 0.036 Y NA
 269467 269468 SpyM3_0765 SpyM3_0766 potB potC TRUE 0.997 -3.000 0.492 0.036 Y NA
 269468 269469 SpyM3_0766 SpyM3_0767 potC potD TRUE 0.996 -7.000 0.253 0.036 Y NA
 269470 269471 SpyM3_0768 SpyM3_0769     TRUE 0.959 -19.000 0.000 1.000 Y NA
 269472 269473 SpyM3_0770 SpyM3_0771 malP   TRUE 0.970 31.000 0.432 1.000 Y NA
 269475 269476 SpyM3_0773 SpyM3_0774     FALSE 0.089 178.000 0.000 1.000   NA
 269476 269477 SpyM3_0774 SpyM3_0775     FALSE 0.128 163.000 0.071 1.000 N NA
 269477 269478 SpyM3_0775 SpyM3_0776     FALSE 0.200 180.000 0.071 NA   NA
 269478 269479 SpyM3_0776 SpyM3_0777   radC TRUE 0.400 100.000 0.046 NA   NA
 269480 269481 SpyM3_0778 SpyM3_0779     TRUE 0.983 10.000 0.714 1.000   NA
 269481 269482 SpyM3_0779 SpyM3_0780     FALSE 0.129 252.000 0.083 NA   NA
 269482 269483 SpyM3_0780 SpyM3_0781     TRUE 0.969 -10.000 0.166 NA   NA
 269483 269484 SpyM3_0781 SpyM3_0782   prs TRUE 0.973 -3.000 0.089 1.000 Y NA
 269484 269485 SpyM3_0782 SpyM3_0783 prs   FALSE 0.284 140.000 0.145 1.000   NA
 269486 269487 SpyM3_0784 SpyM3_0785     TRUE 0.993 -25.000 0.725 1.000   NA
 269487 269488 SpyM3_0785 SpyM3_0786   rluD TRUE 0.935 -3.000 0.150 1.000 N NA
 269488 269489 SpyM3_0786 SpyM3_0787 rluD eutD TRUE 0.847 4.000 0.067 1.000 N NA
 269489 269490 SpyM3_0787 SpyM3_0788 eutD   TRUE 0.483 127.000 0.031 0.046   NA
 269490 269491 SpyM3_0788 SpyM3_0789     TRUE 0.979 -3.000 0.018 0.023   NA
 269493 269494 SpyM3_0791 SpyM3_0792     TRUE 0.977 -7.000 0.382 1.000 N NA
 269494 269495 SpyM3_0792 SpyM3_0793     FALSE 0.022 278.000 0.000 1.000 N NA
 269495 269496 SpyM3_0793 SpyM3_0794   xpt FALSE 0.115 305.000 0.009 1.000 Y NA
 269496 269497 SpyM3_0794 SpyM3_0795 xpt   TRUE 0.960 0.000 0.046 1.000 Y NA
 269498 269499 SpyM3_0796 SpyM3_0797     TRUE 0.814 53.000 0.189 1.000   NA
 269500 269501 SpyM3_0798 SpyM3_0799 tdk prfA TRUE 0.687 35.000 0.062 1.000 N NA
 269501 269502 SpyM3_0799 SpyM3_0800 prfA hemK TRUE 0.967 0.000 0.084 1.000 Y NA
 269502 269503 SpyM3_0800 SpyM3_0801 hemK   TRUE 0.975 -16.000 0.029 NA Y NA
 269503 269504 SpyM3_0801 SpyM3_0802     TRUE 0.824 18.000 0.012 NA   NA
 269504 269505 SpyM3_0802 SpyM3_0803     TRUE 0.938 -10.000 0.056 1.000   NA
 269505 269506 SpyM3_0803 SpyM3_0804     TRUE 0.836 7.000 0.000 NA   NA
 269506 269507 SpyM3_0804 SpyM3_0805     TRUE 0.869 1.000 0.000 NA   NA
 269507 269508 SpyM3_0805 SpyM3_0806     FALSE 0.259 125.000 0.035 NA   NA
 269508 269509 SpyM3_0806 SpyM3_0807     TRUE 0.999 -3.000 0.895 0.008 Y NA
 269509 269510 SpyM3_0807 SpyM3_0808   nox.1 FALSE 0.056 241.000 0.000 1.000   NA
 269512 269513 SpyM3_0810 SpyM3_0811 gyrA   TRUE 0.739 20.000 0.013 NA N NA
 269513 269514 SpyM3_0811 SpyM3_0812     FALSE 0.387 83.000 0.039 NA N NA
 269514 269515 SpyM3_0812 SpyM3_0813     FALSE 0.022 614.000 0.000 NA   NA
 269516 269517 SpyM3_0814 SpyM3_0815   hlyIII FALSE 0.363 117.000 0.135 1.000   NA
 269517 269518 SpyM3_0815 SpyM3_0816 hlyIII   TRUE 0.953 -3.000 0.146 1.000   NA
 269519 269520 SpyM3_0817 SpyM3_0818   rnh TRUE 0.960 -10.000 0.148 1.000   NA
 269520 269521 SpyM3_0818 SpyM3_0819 rnh smf TRUE 0.777 65.000 0.037 1.000 Y NA
 269521 269522 SpyM3_0819 SpyM3_0820 smf topA TRUE 0.717 106.000 0.238 1.000 Y NA
 269522 269523 SpyM3_0820 SpyM3_0821 topA gid TRUE 0.929 -3.000 0.137 1.000 N NA
 269523 269524 SpyM3_0821 SpyM3_0822 gid   FALSE 0.073 153.000 0.005 1.000 N NA
 269524 269525 SpyM3_0822 SpyM3_0823     TRUE 0.897 43.000 0.250 NA   NA
 269525 269526 SpyM3_0823 SpyM3_0824     TRUE 0.985 0.000 0.500 NA   NA
 269526 269527 SpyM3_0824 SpyM3_0825     TRUE 0.819 10.000 0.062 1.000 N NA
 269528 269529 SpyM3_0826 SpyM3_0827 citG   TRUE 0.990 -7.000 0.700 1.000 N NA
 269529 269530 SpyM3_0827 SpyM3_0828     TRUE 0.399 158.000 0.400 1.000 N NA
 269531 269532 SpyM3_0829 SpyM3_0830     TRUE 0.750 54.000 0.077 NA   NA
 269532 269533 SpyM3_0830 SpyM3_0831     FALSE 0.350 96.000 0.103 1.000 N NA
 269533 269534 SpyM3_0831 SpyM3_0832   citD FALSE 0.209 188.000 0.000 1.000 Y NA
 269534 269535 SpyM3_0832 SpyM3_0833 citD citE TRUE 0.994 -12.000 0.284 0.002 N NA
 269535 269536 SpyM3_0833 SpyM3_0834 citE citF TRUE 0.982 3.000 0.119 0.001 N NA
 269536 269537 SpyM3_0834 SpyM3_0835 citF citX TRUE 0.937 -7.000 0.138 1.000 N NA
 269537 269538 SpyM3_0835 SpyM3_0836 citX oadA TRUE 0.833 15.000 0.123 1.000 N NA
 269539 269540 SpyM3_0837 SpyM3_0838 citC   FALSE 0.288 89.000 0.000 1.000   NA
 269540 269541 SpyM3_0838 SpyM3_0839     FALSE 0.015 701.000 0.000 1.000   NA
 269543 269544 SpyM3_0841 SpyM3_0842 ffh ylxM TRUE 0.896 15.000 0.151 1.000   NA
 269544 269545 SpyM3_0842 SpyM3_0843 ylxM   TRUE 0.709 89.000 0.032 0.042   NA
 269545 269546 SpyM3_0843 SpyM3_0844     TRUE 0.517 83.000 0.057 NA   NA
 269548 269549 SpyM3_0846 SpyM3_0847 murM.2   FALSE 0.026 365.000 0.000 1.000   NA
 269549 269550 SpyM3_0847 SpyM3_0848     FALSE 0.233 134.000 0.040 NA   NA
 269550 269551 SpyM3_0848 SpyM3_0849   pdxK TRUE 0.965 -22.000 0.142 NA   NA
 269553 269554 SpyM3_0851 SpyM3_0852     FALSE 0.030 339.000 0.000 1.000   NA
 269554 269555 SpyM3_0852 SpyM3_0853   fhs.1 TRUE 0.402 85.000 0.094 1.000 N NA
 269555 269556 SpyM3_0853 SpyM3_0854 fhs.1 lplA FALSE 0.306 128.000 0.200 1.000 N NA
 269556 269557 SpyM3_0854 SpyM3_0855 lplA   TRUE 0.850 47.000 0.250 NA N NA
 269557 269558 SpyM3_0855 SpyM3_0856     TRUE 0.674 98.000 0.286 NA   NA
 269558 269559 SpyM3_0856 SpyM3_0857     TRUE 0.874 23.000 0.107 NA   NA
 269559 269560 SpyM3_0857 SpyM3_0858     TRUE 0.943 42.000 0.571 NA N NA
 269560 269561 SpyM3_0858 SpyM3_0859     TRUE 0.978 -3.000 0.100 NA Y NA
 269561 269562 SpyM3_0859 SpyM3_0860     TRUE 0.860 -3.000 0.019 1.000 N NA
 269563 269564 SpyM3_0861 SpyM3_0862 dpfB dfp TRUE 0.897 -7.000 0.002 1.000   NA
 269564 269565 SpyM3_0862 SpyM3_0863 dfp   TRUE 0.664 58.000 0.019 NA   NA
 269565 269566 SpyM3_0863 SpyM3_0864   pgmA FALSE 0.225 176.000 0.098 NA   NA
 269567 269568 SpyM3_0865 SpyM3_0866     TRUE 0.871 134.000 0.720 0.036   NA
 269568 269569 SpyM3_0866 SpyM3_0867     TRUE 0.986 -7.000 0.438 1.000   NA
 269569 269570 SpyM3_0867 SpyM3_0868     FALSE 0.185 139.000 0.036 1.000   NA
 269570 269571 SpyM3_0868 SpyM3_0869   cdd TRUE 0.673 94.000 0.300 1.000   NA
 269571 269572 SpyM3_0869 SpyM3_0870 cdd   FALSE 0.008 660.000 0.000 1.000 N NA
 269573 269574 SpyM3_0871 SpyM3_0872 coaA rpsT FALSE 0.387 69.000 0.014 1.000 N NA
 269575 269576 SpyM3_0873 SpyM3_0874 ciaH ciaR TRUE 0.995 -7.000 0.606 1.000 Y NA
 269576 269577 SpyM3_0874 SpyM3_0875 ciaR pepN FALSE 0.036 347.000 0.061 1.000 N NA
 269577 269578 SpyM3_0875 SpyM3_0876 pepN phoU FALSE 0.120 205.000 0.067 NA N NA
 269578 269579 SpyM3_0876 SpyM3_0877 phoU pstB TRUE 0.936 68.000 0.413 NA Y NA
 269579 269580 SpyM3_0877 SpyM3_0878 pstB pstB2 TRUE 0.997 10.000 0.542 0.001 Y NA
 269580 269581 SpyM3_0878 SpyM3_0879 pstB2 pstC TRUE 0.995 16.000 0.490 0.003 Y NA
 269581 269582 SpyM3_0879 SpyM3_0880 pstC pstC2 TRUE 0.999 -10.000 0.907 0.003 Y NA
 269582 269583 SpyM3_0880 SpyM3_0881 pstC2 pstS TRUE 0.967 11.000 0.206 1.000 Y NA
 269583 269584 SpyM3_0881 SpyM3_0882 pstS   TRUE 0.410 139.000 0.303 NA N NA
 269584 269585 SpyM3_0882 SpyM3_0883     TRUE 0.939 6.000 0.229 NA N NA
 269585 269586 SpyM3_0883 SpyM3_0884     TRUE 0.984 -10.000 0.337 NA   NA
 269586 269587 SpyM3_0884 SpyM3_0885     TRUE 0.951 2.000 0.169 NA   NA
 269587 269588 SpyM3_0885 SpyM3_0886   mreA TRUE 0.568 43.000 0.017 1.000 N NA
 269588 269589 SpyM3_0886 SpyM3_0887 mreA truB TRUE 0.899 29.000 0.308 1.000 N NA
 269589 269590 SpyM3_0887 SpyM3_0888 truB   FALSE 0.278 116.000 0.014 NA   NA
 269590 269591 SpyM3_0888 SpyM3_0889     TRUE 0.418 97.000 0.045 NA   NA
 269591 269592 SpyM3_0889 SpyM3_0890     TRUE 0.881 11.000 0.045 NA   NA
 269592 269593 SpyM3_0890 SpyM3_0891     TRUE 0.495 92.000 0.121 1.000   NA
 269593 269594 SpyM3_0891 SpyM3_0892     TRUE 0.980 15.000 0.438 1.000 Y NA
 269596 269597 SpyM3_0894 SpyM3_0895     FALSE 0.377 163.000 0.238 NA   NA
 269597 269598 SpyM3_0895 SpyM3_0896     TRUE 0.981 11.000 0.600 NA   NA
 269598 269599 SpyM3_0896 SpyM3_0897     TRUE 0.959 41.000 0.600 NA   NA
 269599 269600 SpyM3_0897 SpyM3_0898     TRUE 0.879 13.000 0.060 NA   NA
 269600 269601 SpyM3_0898 SpyM3_0899     TRUE 0.922 11.000 0.143 NA   NA
 269601 269602 SpyM3_0899 SpyM3_0900     TRUE 0.887 61.000 0.357 NA   NA
 269602 269603 SpyM3_0900 SpyM3_0901   pcrA FALSE 0.027 363.000 0.000 1.000   NA
 269603 269604 SpyM3_0901 SpyM3_0902 pcrA   FALSE 0.033 369.000 0.000 NA   NA
 269605 269606 SpyM3_0903 SpyM3_0904     TRUE 0.460 120.000 0.060 0.072 N NA
 269607 269608 SpyM3_0905 SpyM3_0906 cfa   FALSE 0.032 370.000 0.000 NA   NA
 269608 269609 SpyM3_0906 SpyM3_0907     TRUE 0.949 16.000 0.154 1.000 Y NA
 269609 269610 SpyM3_0907 SpyM3_0908     TRUE 0.956 10.000 0.130 1.000 Y NA
 269610 269611 SpyM3_0908 SpyM3_0909     FALSE 0.186 107.000 0.018 1.000 N NA
 269611 269612 SpyM3_0909 SpyM3_0910   glmS FALSE 0.058 196.000 0.008 1.000 N NA
 269612 269613 SpyM3_0910 SpyM3_0911 glmS sipC FALSE 0.048 227.000 0.011 1.000 N NA
 269613 269614 SpyM3_0911 SpyM3_0912 sipC pyk FALSE 0.088 218.000 0.072 1.000 N NA
 269614 269615 SpyM3_0912 SpyM3_0913 pyk pfk TRUE 0.974 63.000 0.261 0.006 Y NA
 269615 269616 SpyM3_0913 SpyM3_0914 pfk dnaE TRUE 0.459 80.000 0.098 1.000 N NA
 269617 269618 SpyM3_0915 SpyM3_0916     TRUE 0.972 0.000 0.412 1.000 N NA
 269618 269619 SpyM3_0916 SpyM3_0917     TRUE 0.975 10.000 0.471 NA   NA
 269621 269622 SpyM3_0919 SpyM3_0920   ssa FALSE 0.232 113.000 0.000 NA   NA
 269622 269623 SpyM3_0920 SpyM3_0921 ssa   FALSE 0.068 213.000 0.000 1.000   NA
 269623 269624 SpyM3_0921 SpyM3_0922     FALSE 0.120 138.000 0.000 1.000   NA
 269624 269625 SpyM3_0922 SpyM3_0923     FALSE 0.218 116.000 0.000 NA   NA
 269625 269626 SpyM3_0923 SpyM3_0924     TRUE 0.900 -3.000 0.000 NA   NA
 269626 269627 SpyM3_0924 SpyM3_0925     TRUE 0.825 10.000 0.000 NA   NA
 269627 269628 SpyM3_0925 SpyM3_0926     TRUE 0.853 3.000 0.000 NA   NA
 269628 269629 SpyM3_0926 SpyM3_0927     TRUE 0.809 12.000 0.000 NA   NA
 269629 269630 SpyM3_0927 SpyM3_0928     TRUE 0.923 85.000 1.000 1.000   NA
 269630 269631 SpyM3_0928 SpyM3_0929   hylP.2 TRUE 0.921 40.000 0.000 0.004   NA
 269631 269632 SpyM3_0929 SpyM3_0930 hylP.2   TRUE 0.900 -3.000 0.000 NA   NA
 269632 269633 SpyM3_0930 SpyM3_0931     FALSE 0.338 165.000 0.200 NA   NA
 269633 269634 SpyM3_0931 SpyM3_0932     TRUE 0.990 0.000 0.667 NA   NA
 269634 269635 SpyM3_0932 SpyM3_0933     TRUE 0.981 13.000 0.667 NA   NA
 269635 269636 SpyM3_0933 SpyM3_0934     TRUE 0.984 30.000 1.000 NA   NA
 269636 269637 SpyM3_0934 SpyM3_0935     TRUE 0.900 53.000 0.333 NA   NA
 269637 269638 SpyM3_0935 SpyM3_0936     TRUE 0.978 19.000 0.667 NA   NA
 269638 269639 SpyM3_0936 SpyM3_0937     TRUE 0.975 -3.000 0.250 NA   NA
 269639 269640 SpyM3_0937 SpyM3_0938     TRUE 0.961 -3.000 0.150 NA   NA
 269640 269641 SpyM3_0938 SpyM3_0939     TRUE 0.978 -3.000 0.286 NA   NA
 269641 269642 SpyM3_0939 SpyM3_0940     TRUE 0.853 3.000 0.000 NA   NA
 269642 269643 SpyM3_0940 SpyM3_0941     TRUE 0.793 14.000 0.000 NA   NA
 269643 269644 SpyM3_0941 SpyM3_0942   clpP.2 TRUE 0.820 26.000 0.038 NA   NA
 269644 269645 SpyM3_0942 SpyM3_0943 clpP.2   TRUE 0.945 -22.000 0.038 NA   NA
 269645 269646 SpyM3_0943 SpyM3_0944     TRUE 0.703 34.000 0.000 NA   NA
 269646 269647 SpyM3_0944 SpyM3_0945     TRUE 0.910 -7.000 0.000 NA   NA
 269647 269648 SpyM3_0945 SpyM3_0946     TRUE 0.984 -3.000 0.400 NA   NA
 269648 269649 SpyM3_0946 SpyM3_0947     TRUE 0.946 15.000 0.278 NA   NA
 269649 269650 SpyM3_0947 SpyM3_0948     FALSE 0.240 172.000 0.111 NA   NA
 269650 269651 SpyM3_0948 SpyM3_0949     TRUE 0.900 -3.000 0.000 NA   NA
 269651 269652 SpyM3_0949 SpyM3_0950     FALSE 0.054 284.000 0.000 NA   NA
 269652 269653 SpyM3_0950 SpyM3_0951     FALSE 0.057 273.000 0.000 NA   NA
 269653 269654 SpyM3_0951 SpyM3_0952     TRUE 0.881 0.000 0.000 NA   NA
 269654 269655 SpyM3_0952 SpyM3_0953     FALSE 0.105 191.000 0.000 NA   NA
 269655 269656 SpyM3_0953 SpyM3_0954     FALSE 0.047 306.000 0.000 NA   NA
 269656 269657 SpyM3_0954 SpyM3_0955     TRUE 0.914 -16.000 0.000 NA   NA
 269657 269658 SpyM3_0955 SpyM3_0956     TRUE 0.900 -3.000 0.000 NA   NA
 269658 269659 SpyM3_0956 SpyM3_0957     FALSE 0.062 262.000 0.000 NA   NA
 269659 269660 SpyM3_0957 SpyM3_0958     TRUE 0.630 48.000 0.000 NA   NA
 269660 269661 SpyM3_0958 SpyM3_0959     TRUE 0.970 -10.000 0.167 NA   NA
 269661 269662 SpyM3_0959 SpyM3_0960     TRUE 0.904 12.000 0.100 NA   NA
 269662 269663 SpyM3_0960 SpyM3_0961     TRUE 0.782 16.000 0.000 NA   NA
 269663 269664 SpyM3_0961 SpyM3_0962     FALSE 0.276 102.000 0.000 NA   NA
 269664 269665 SpyM3_0962 SpyM3_0963     TRUE 0.970 1.000 0.286 NA   NA
 269665 269666 SpyM3_0963 SpyM3_0964     FALSE 0.077 229.000 0.000 NA   NA
 269666 269667 SpyM3_0964 SpyM3_0965     TRUE 0.782 16.000 0.000 NA   NA
 269667 269668 SpyM3_0965 SpyM3_0966     TRUE 0.900 -3.000 0.000 NA   NA
 269668 269669 SpyM3_0966 SpyM3_0967     FALSE 0.367 78.000 0.000 1.000   NA
 269670 269671 SpyM3_0968 SpyM3_0969     FALSE 0.138 151.000 0.000 NA   NA
 269672 269673 SpyM3_0970 SpyM3_0971     TRUE 0.809 12.000 0.000 NA   NA
 269677 269678 SpyM3_0975 SpyM3_0976     TRUE 0.703 34.000 0.000 NA   NA
 269679 269680 SpyM3_0977 SpyM3_0978   intP FALSE 0.011 435.000 0.000 1.000 N NA
 269680 269681 SpyM3_0978 SpyM3_0979 intP   FALSE 0.035 363.000 0.000 NA   NA
 269682 269683 SpyM3_0980 SpyM3_0981 glgP malQ TRUE 0.985 35.000 0.289 0.021 Y NA
 269683 269684 SpyM3_0981 SpyM3_0982 malQ malR TRUE 0.650 115.000 0.538 1.000 N NA
 269685 269686 SpyM3_0983 SpyM3_0984 malE malF TRUE 0.795 274.000 0.690 0.034 Y NA
 269686 269687 SpyM3_0984 SpyM3_0985 malF malG TRUE 0.998 0.000 0.793 0.034 Y NA
 269689 269690 SpyM3_0987 SpyM3_0988     TRUE 0.913 -58.000 0.000 NA   NA
 269691 269692 SpyM3_0989 SpyM3_0990     FALSE 0.034 367.000 0.000 NA   NA
 269692 269693 SpyM3_0990 SpyM3_0991   dltD TRUE 0.731 31.000 0.042 NA N NA
 269693 269694 SpyM3_0991 SpyM3_0992 dltD dltC TRUE 0.986 -7.000 0.409 NA   NA
 269694 269695 SpyM3_0992 SpyM3_0993 dltC dltB TRUE 0.960 18.000 0.387 NA   NA
 269695 269696 SpyM3_0993 SpyM3_0994 dltB dltA TRUE 0.981 -3.000 0.435 NA N NA
 269696 269697 SpyM3_0994 SpyM3_0995 dltA   TRUE 0.977 12.000 0.549 NA   NA
 269697 269698 SpyM3_0995 SpyM3_0996   uvrB FALSE 0.061 264.000 0.000 NA   NA
 269699 269700 SpyM3_0997 SpyM3_0998 glnP glnQ TRUE 0.986 0.000 0.326 1.000 Y NA
 269701 269702 SpyM3_0999 SpyM3_1000     TRUE 0.967 -3.000 0.182 NA   NA
 269702 269703 SpyM3_1000 SpyM3_1001     FALSE 0.378 178.000 0.273 NA   NA
 269703 269704 SpyM3_1001 SpyM3_1002     TRUE 0.988 -3.000 0.500 NA   NA
 269704 269705 SpyM3_1002 SpyM3_1003     TRUE 0.997 3.000 0.500 0.014 Y NA
 269705 269706 SpyM3_1003 SpyM3_1004     TRUE 0.754 23.000 0.000 NA   NA
 269706 269707 SpyM3_1004 SpyM3_1005     TRUE 0.913 -90.000 0.000 NA   NA
 269707 269708 SpyM3_1005 SpyM3_1006     FALSE 0.343 106.000 0.064 1.000   NA
 269708 269709 SpyM3_1006 SpyM3_1007   bglA.2 TRUE 0.975 9.000 0.500 1.000   NA
 269711 269712 SpyM3_1009 SpyM3_1010     TRUE 0.559 69.000 0.009 NA   NA
 269713 269714 SpyM3_1011 SpyM3_1012     TRUE 0.955 21.000 0.000 0.056 Y NA
 269716 269717 SpyM3_1014 SpyM3_1015     FALSE 0.306 78.000 0.000 NA N NA
 269717 269718 SpyM3_1015 SpyM3_1016     TRUE 0.414 80.000 0.000 NA   NA
 269718 269719 SpyM3_1016 SpyM3_1017     FALSE 0.268 103.000 0.000 NA   NA
 269724 269725 SpyM3_1022 SpyM3_1023     FALSE 0.367 85.000 0.000 NA   NA
 269725 269726 SpyM3_1023 SpyM3_1024     FALSE 0.030 341.000 0.000 1.000   NA
 269726 269727 SpyM3_1024 SpyM3_1025   psr FALSE 0.106 208.000 0.093 1.000 N NA
 269727 269728 SpyM3_1025 SpyM3_1026 psr aroK FALSE 0.116 208.000 0.111 1.000 N NA
 269728 269729 SpyM3_1026 SpyM3_1027 aroK aroA.1 TRUE 0.965 -7.000 0.012 1.000 Y NA
 269729 269730 SpyM3_1027 SpyM3_1028 aroA.1   FALSE 0.251 102.000 0.003 1.000   NA
 269730 269731 SpyM3_1028 SpyM3_1029   map TRUE 0.971 2.000 0.373 1.000   NA
 269731 269732 SpyM3_1029 SpyM3_1030 map   TRUE 0.904 15.000 0.235 1.000 N NA
 269732 269733 SpyM3_1030 SpyM3_1031     TRUE 0.950 9.000 0.342 1.000 N NA
 269733 269734 SpyM3_1031 SpyM3_1032   grab FALSE 0.056 238.000 0.000 1.000   NA
 269734 269735 SpyM3_1032 SpyM3_1033 grab murZ FALSE 0.028 357.000 0.000 1.000   NA
 269735 269736 SpyM3_1033 SpyM3_1034 murZ metK FALSE 0.088 174.000 0.026 1.000 N NA
 269736 269737 SpyM3_1034 SpyM3_1035 metK inlA FALSE 0.017 537.000 0.000 1.000   NA
 269739 269740 SpyM3_1037 SpyM3_1038   dnaX TRUE 0.913 4.000 0.067 NA   NA
 269740 269741 SpyM3_1038 SpyM3_1039 dnaX   TRUE 0.880 0.000 0.030 NA N NA
 269743 269744 SpyM3_1041 SpyM3_1042   udk TRUE 0.475 80.000 0.010 NA   NA
 269746 269747 SpyM3_1044 SpyM3_1045   gapN FALSE 0.249 95.000 0.028 1.000 N NA
 269747 269748 SpyM3_1045 SpyM3_1046 gapN ptsI FALSE 0.072 209.000 0.035 1.000 N NA
 269748 269749 SpyM3_1046 SpyM3_1047 ptsI ptsH TRUE 0.990 14.000 0.240 0.014 Y NA
 269750 269751 SpyM3_1048 SpyM3_1049 nrdH nrdE.1 TRUE 0.958 20.000 0.562 1.000 N NA
 269751 269752 SpyM3_1049 SpyM3_1050 nrdE.1 nrdF.1 TRUE 0.742 333.000 0.500 0.002 Y NA
 269752 269753 SpyM3_1050 SpyM3_1051 nrdF.1   TRUE 0.922 -25.000 0.083 1.000 N NA
 269753 269754 SpyM3_1051 SpyM3_1052     FALSE 0.065 138.000 0.000 1.000 N NA
 269754 269755 SpyM3_1052 SpyM3_1053     TRUE 0.707 33.000 0.000 NA   NA
 269755 269756 SpyM3_1053 SpyM3_1054     FALSE 0.268 103.000 0.000 NA   NA
 269757 269758 SpyM3_1055 SpyM3_1056     TRUE 0.873 19.000 0.077 NA   NA
 269758 269759 SpyM3_1056 SpyM3_1057     TRUE 0.983 -3.000 0.362 NA   NA
 269759 269760 SpyM3_1057 SpyM3_1058   alaS FALSE 0.014 359.000 0.000 1.000 N NA
 269760 269761 SpyM3_1058 SpyM3_1059 alaS prtM.1 FALSE 0.009 528.000 0.000 1.000 N NA
 269761 269762 SpyM3_1059 SpyM3_1060 prtM.1   TRUE 0.551 63.000 0.012 1.000   NA
 269762 269763 SpyM3_1060 SpyM3_1061     FALSE 0.152 141.000 0.012 1.000   NA
 269763 269764 SpyM3_1061 SpyM3_1062   pepB FALSE 0.012 376.000 0.000 1.000 N NA
 269764 269765 SpyM3_1062 SpyM3_1063 pepB coiA TRUE 0.937 13.000 0.204 NA   NA
 269765 269766 SpyM3_1063 SpyM3_1064 coiA   FALSE 0.069 297.000 0.020 NA   NA
 269766 269767 SpyM3_1064 SpyM3_1065   nagB FALSE 0.106 170.000 0.051 1.000 N NA
 269768 269769 SpyM3_1066 SpyM3_1067 queA   TRUE 0.820 7.000 0.004 1.000   NA
 269770 269771 SpyM3_1068 SpyM3_1069     TRUE 0.900 -3.000 0.000 NA   NA
 269771 269772 SpyM3_1069 SpyM3_1070     TRUE 0.914 -15.000 0.000 NA   NA
 269772 269773 SpyM3_1070 SpyM3_1071   sodM FALSE 0.124 167.000 0.000 NA   NA
 269773 269774 SpyM3_1071 SpyM3_1072 sodM holA FALSE 0.206 97.000 0.012 1.000 N NA
 269774 269775 SpyM3_1072 SpyM3_1073 holA comEC TRUE 0.703 71.000 0.163 1.000   NA
 269775 269776 SpyM3_1073 SpyM3_1074 comEC comEA TRUE 0.956 -19.000 0.130 1.000   NA
 269776 269777 SpyM3_1074 SpyM3_1075 comEA   FALSE 0.064 200.000 0.014 1.000 N NA
 269778 269779 SpyM3_1076 SpyM3_1077     TRUE 0.971 -10.000 0.209 1.000   NA
 269780 269781 SpyM3_1078 SpyM3_1079 kup deaD.1 FALSE 0.104 127.000 0.007 1.000 N NA
 269781 269782 SpyM3_1079 SpyM3_1080 deaD.1 prfC FALSE 0.096 307.000 0.000 1.000 Y NA
 269784 269785 SpyM3_1082 SpyM3_1083   murF TRUE 0.420 104.000 0.078 NA   NA
 269785 269786 SpyM3_1083 SpyM3_1084 murF ddlA TRUE 0.593 199.000 0.046 0.010 Y NA
 269786 269787 SpyM3_1084 SpyM3_1085 ddlA recR FALSE 0.069 182.000 0.010 1.000 N NA
 269787 269788 SpyM3_1085 SpyM3_1086 recR   TRUE 0.637 47.000 0.000 NA   NA
 269788 269789 SpyM3_1086 SpyM3_1087   fdhC FALSE 0.023 561.000 0.000 NA   NA
 269789 269790 SpyM3_1087 SpyM3_1088 fdhC   FALSE 0.338 124.000 0.105 NA   NA
 269790 269791 SpyM3_1088 SpyM3_1089     FALSE 0.250 161.000 0.107 NA   NA
 269791 269792 SpyM3_1089 SpyM3_1090   gpmA FALSE 0.257 107.000 0.012 1.000   NA
 269794 269795 SpyM3_1092 SpyM3_1093   cadA TRUE 0.572 72.000 0.018 NA   NA
 269795 269796 SpyM3_1093 SpyM3_1094 cadA   FALSE 0.023 530.000 0.000 NA   NA
 269796 269797 SpyM3_1094 SpyM3_1095   mf4 TRUE 0.512 67.000 0.000 NA   NA
 269797 269798 SpyM3_1095 SpyM3_1096 mf4   FALSE 0.054 245.000 0.000 1.000   NA
 269798 269799 SpyM3_1096 SpyM3_1097     FALSE 0.236 112.000 0.000 NA   NA
 269799 269800 SpyM3_1097 SpyM3_1098     TRUE 0.816 11.000 0.000 NA   NA
 269800 269801 SpyM3_1098 SpyM3_1099     TRUE 0.853 3.000 0.000 NA   NA
 269801 269802 SpyM3_1099 SpyM3_1100     TRUE 0.833 9.000 0.000 NA   NA
 269802 269803 SpyM3_1100 SpyM3_1101   hylP.3 TRUE 0.787 15.000 0.000 NA   NA
 269803 269804 SpyM3_1101 SpyM3_1102 hylP.3 pblB TRUE 0.881 0.000 0.000 NA   NA
 269804 269805 SpyM3_1102 SpyM3_1103 pblB   TRUE 0.993 -18.000 0.667 NA   NA
 269805 269806 SpyM3_1103 SpyM3_1104   pblA TRUE 0.968 -3.000 0.188 NA   NA
 269806 269807 SpyM3_1104 SpyM3_1105 pblA   TRUE 0.970 0.000 0.250 NA   NA
 269807 269808 SpyM3_1105 SpyM3_1106     TRUE 0.986 15.000 0.833 NA   NA
 269808 269809 SpyM3_1106 SpyM3_1107     TRUE 0.946 11.000 0.222 NA   NA
 269809 269810 SpyM3_1107 SpyM3_1108     TRUE 0.966 16.000 0.444 NA   NA
 269810 269811 SpyM3_1108 SpyM3_1109     TRUE 0.990 1.000 0.750 NA   NA
 269811 269812 SpyM3_1109 SpyM3_1110     TRUE 0.989 -40.000 0.467 NA   NA
 269812 269813 SpyM3_1110 SpyM3_1111     TRUE 0.993 -40.000 0.667 NA   NA
 269813 269814 SpyM3_1111 SpyM3_1112     TRUE 0.825 10.000 0.000 NA   NA
 269814 269815 SpyM3_1112 SpyM3_1113     TRUE 0.881 0.000 0.000 NA   NA
 269815 269816 SpyM3_1113 SpyM3_1114     TRUE 0.955 25.000 0.417 NA   NA
 269816 269817 SpyM3_1114 SpyM3_1115     TRUE 0.754 81.000 0.263 NA   NA
 269817 269818 SpyM3_1115 SpyM3_1116     FALSE 0.388 82.000 0.000 NA   NA
 269818 269819 SpyM3_1116 SpyM3_1117     TRUE 0.913 -52.000 0.000 NA   NA
 269819 269820 SpyM3_1117 SpyM3_1118     TRUE 0.910 -7.000 0.000 NA   NA
 269820 269821 SpyM3_1118 SpyM3_1119     TRUE 0.443 77.000 0.000 NA   NA
 269821 269822 SpyM3_1119 SpyM3_1120     TRUE 0.900 -3.000 0.000 NA   NA
 269822 269823 SpyM3_1120 SpyM3_1121     TRUE 0.984 -7.000 0.353 NA   NA
 269823 269824 SpyM3_1121 SpyM3_1122     TRUE 0.900 -3.000 0.000 NA   NA
 269824 269825 SpyM3_1122 SpyM3_1123     FALSE 0.143 148.000 0.000 NA   NA
 269825 269826 SpyM3_1123 SpyM3_1124     TRUE 0.593 108.000 0.250 NA   NA
 269826 269827 SpyM3_1124 SpyM3_1125     TRUE 0.952 76.000 1.000 NA   NA
 269827 269828 SpyM3_1125 SpyM3_1126     TRUE 0.900 -3.000 0.000 NA   NA
 269828 269829 SpyM3_1126 SpyM3_1127     TRUE 0.900 -3.000 0.000 NA   NA
 269829 269830 SpyM3_1127 SpyM3_1128     TRUE 0.689 36.000 0.000 NA   NA
 269830 269831 SpyM3_1128 SpyM3_1129     TRUE 0.900 -3.000 0.000 NA   NA
 269831 269832 SpyM3_1129 SpyM3_1130     TRUE 0.816 11.000 0.000 NA   NA
 269832 269833 SpyM3_1130 SpyM3_1131     TRUE 0.992 -3.000 0.714 NA   NA
 269833 269834 SpyM3_1131 SpyM3_1132     FALSE 0.034 365.000 0.000 NA   NA
 269834 269835 SpyM3_1132 SpyM3_1133     TRUE 0.910 -7.000 0.000 NA   NA
 269835 269836 SpyM3_1133 SpyM3_1134   recT TRUE 0.992 -3.000 0.667 NA   NA
 269836 269837 SpyM3_1134 SpyM3_1135 recT   TRUE 0.853 3.000 0.000 NA   NA
 269837 269838 SpyM3_1135 SpyM3_1136     TRUE 0.842 5.000 0.000 NA   NA
 269838 269839 SpyM3_1136 SpyM3_1137     TRUE 0.590 56.000 0.000 NA   NA
 269839 269840 SpyM3_1137 SpyM3_1138     FALSE 0.145 146.000 0.000 NA   NA
 269840 269841 SpyM3_1138 SpyM3_1139     TRUE 0.914 -19.000 0.000 NA   NA
 269841 269842 SpyM3_1139 SpyM3_1140     FALSE 0.024 504.000 0.000 NA   NA
 269842 269843 SpyM3_1140 SpyM3_1141   xis TRUE 0.861 2.000 0.000 NA   NA
 269843 269844 SpyM3_1141 SpyM3_1142 xis   FALSE 0.058 270.000 0.000 NA   NA
 269845 269846 SpyM3_1143 SpyM3_1144     TRUE 0.809 12.000 0.000 NA   NA
 269846 269847 SpyM3_1144 SpyM3_1145     FALSE 0.185 124.000 0.000 NA   NA
 269848 269849 SpyM3_1146 SpyM3_1147     TRUE 0.543 99.000 0.156 NA   NA
 269849 269850 SpyM3_1147 SpyM3_1148     TRUE 0.995 -22.000 0.828 NA   NA
 269850 269851 SpyM3_1148 SpyM3_1149     TRUE 0.974 -7.000 0.203 NA   NA
 269851 269852 SpyM3_1149 SpyM3_1150     FALSE 0.078 228.000 0.000 NA   NA
 269852 269853 SpyM3_1150 SpyM3_1151   recN FALSE 0.093 172.000 0.000 1.000   NA
 269853 269854 SpyM3_1151 SpyM3_1152 recN   TRUE 0.712 22.000 0.037 1.000 N NA
 269854 269855 SpyM3_1152 SpyM3_1153   hlyA TRUE 0.900 -13.000 0.048 1.000 N NA
 269855 269856 SpyM3_1153 SpyM3_1154 hlyA fps TRUE 0.903 -7.000 0.058 1.000 N NA
 269856 269857 SpyM3_1154 SpyM3_1155 fps xseB TRUE 0.899 0.000 0.100 1.000 N NA
 269857 269858 SpyM3_1155 SpyM3_1156 xseB xseA TRUE 0.998 -22.000 0.412 0.001 Y NA
 269858 269859 SpyM3_1156 SpyM3_1157 xseA folD FALSE 0.114 153.000 0.045 1.000 N NA
 269859 269860 SpyM3_1157 SpyM3_1158 folD   FALSE 0.059 208.000 0.013 1.000 N NA
 269860 269861 SpyM3_1158 SpyM3_1159   phr FALSE 0.060 178.000 0.004 1.000 N NA
 269861 269862 SpyM3_1159 SpyM3_1160 phr   FALSE 0.059 149.000 0.000 1.000 N NA
 269862 269863 SpyM3_1160 SpyM3_1161     TRUE 0.993 0.000 0.640 1.000 Y NA
 269863 269864 SpyM3_1161 SpyM3_1162     FALSE 0.260 127.000 0.044 NA   NA
 269865 269866 SpyM3_1163 SpyM3_1164 clpE mutT FALSE 0.182 128.000 0.079 1.000 N NA
 269866 269867 SpyM3_1164 SpyM3_1165 mutT   TRUE 0.789 51.000 0.114 NA   NA
 269868 269869 SpyM3_1166 SpyM3_1167 ileS divIVA FALSE 0.048 273.000 0.012 NA N NA
 269869 269870 SpyM3_1167 SpyM3_1168 divIVA   TRUE 0.981 10.000 0.579 NA   NA
 269870 269871 SpyM3_1168 SpyM3_1169     TRUE 0.969 0.000 0.287 1.000   NA
 269871 269872 SpyM3_1169 SpyM3_1170     TRUE 0.972 5.000 0.370 NA   NA
 269872 269873 SpyM3_1170 SpyM3_1171     TRUE 0.936 12.000 0.194 NA   NA
 269873 269874 SpyM3_1171 SpyM3_1172   ftsZ TRUE 0.899 3.000 0.030 NA   NA
 269874 269875 SpyM3_1172 SpyM3_1173 ftsZ ftsA TRUE 0.976 24.000 0.460 1.000 Y NA
 269875 269876 SpyM3_1173 SpyM3_1174 ftsA divIB FALSE 0.335 211.000 0.389 NA N NA
 269876 269877 SpyM3_1174 SpyM3_1175 divIB murG TRUE 0.967 1.000 0.072 NA Y NA
 269877 269878 SpyM3_1175 SpyM3_1176 murG murD TRUE 0.974 -21.000 0.060 1.000 Y NA
 269878 269879 SpyM3_1176 SpyM3_1177 murD   FALSE 0.044 356.000 0.006 NA   NA
 269879 269880 SpyM3_1177 SpyM3_1178     FALSE 0.249 122.000 0.015 NA   NA
 269880 269881 SpyM3_1178 SpyM3_1179     FALSE 0.030 318.000 0.003 NA N NA
 269881 269882 SpyM3_1179 SpyM3_1180   glcK TRUE 0.855 10.000 0.064 NA N NA
 269882 269883 SpyM3_1180 SpyM3_1181 glcK   TRUE 0.979 5.000 0.496 NA   NA
 269883 269884 SpyM3_1181 SpyM3_1182   dpr FALSE 0.291 124.000 0.058 NA   NA
 269886 269887 SpyM3_1184 SpyM3_1185     TRUE 0.886 4.000 0.016 NA   NA
 269887 269888 SpyM3_1185 SpyM3_1186     FALSE 0.027 448.000 0.000 NA   NA
 269888 269889 SpyM3_1186 SpyM3_1187     FALSE 0.011 414.000 0.000 1.000 N NA
 269889 269890 SpyM3_1187 SpyM3_1188   kdtB TRUE 0.903 -13.000 0.052 1.000 N NA
 269890 269891 SpyM3_1188 SpyM3_1189 kdtB   TRUE 0.977 -10.000 0.367 1.000 N NA
 269891 269892 SpyM3_1189 SpyM3_1190   asnA FALSE 0.110 123.000 0.006 1.000 N NA
 269892 269893 SpyM3_1190 SpyM3_1191 asnA arcC FALSE 0.091 313.000 0.000 1.000 Y NA
 269893 269894 SpyM3_1191 SpyM3_1192 arcC   TRUE 0.913 20.000 0.035 1.000 Y NA
 269894 269895 SpyM3_1192 SpyM3_1193     TRUE 0.885 17.000 0.140 1.000   NA
 269895 269896 SpyM3_1193 SpyM3_1194   arcB FALSE 0.202 170.000 0.104 1.000   NA
 269896 269897 SpyM3_1194 SpyM3_1195 arcB   TRUE 0.793 40.000 0.104 1.000   NA
 269897 269898 SpyM3_1195 arcA   sagP FALSE 0.364 100.000 0.056 1.000   NA
 269898 269899 arcA SpyM3_1197 sagP   FALSE 0.022 276.000 0.000 1.000 N NA
 269901 269902 SpyM3_1199 SpyM3_1200     TRUE 0.830 14.000 0.009 NA   NA
 269902 269903 SpyM3_1200 SpyM3_1201   yesM TRUE 0.461 73.000 0.007 1.000   NA
 269903 269904 SpyM3_1201 SpyM3_1202 yesM yesN TRUE 0.996 -3.000 0.480 0.011   NA
 269904 269905 SpyM3_1202 SpyM3_1203 yesN   FALSE 0.070 245.000 0.000 NA   NA
 269905 269906 SpyM3_1203 SpyM3_1204   sla FALSE 0.038 346.000 0.000 NA   NA
 269906 269907 SpyM3_1204 SpyM3_1205 sla speK FALSE 0.020 476.000 0.000 1.000   NA
 269907 269908 SpyM3_1205 SpyM3_1206 speK   FALSE 0.048 304.000 0.000 NA   NA
 269908 269909 SpyM3_1206 SpyM3_1207     TRUE 0.978 -12.000 0.231 NA   NA
 269909 269910 SpyM3_1207 SpyM3_1208     FALSE 0.150 140.000 0.000 NA   NA
 269910 269911 SpyM3_1208 SpyM3_1209     FALSE 0.238 111.000 0.000 NA   NA
 269911 269912 SpyM3_1209 SpyM3_1210     TRUE 0.992 -3.000 0.667 NA   NA
 269912 269913 SpyM3_1210 SpyM3_1211     TRUE 0.816 11.000 0.000 NA   NA
 269913 269914 SpyM3_1211 SpyM3_1212     TRUE 0.993 3.000 1.000 NA   NA
 269914 269915 SpyM3_1212 SpyM3_1213     TRUE 0.990 12.000 1.000 NA   NA
 269915 269916 SpyM3_1213 SpyM3_1214   hylP.4 TRUE 0.736 15.000 0.000 1.000   NA
 269916 269917 SpyM3_1214 SpyM3_1215 hylP.4   TRUE 0.900 -3.000 0.000 NA   NA
 269917 269918 SpyM3_1215 SpyM3_1216     TRUE 0.970 -3.000 0.200 NA   NA
 269918 269919 SpyM3_1216 SpyM3_1217     TRUE 0.973 -3.000 0.222 NA   NA
 269919 269920 SpyM3_1217 SpyM3_1218     TRUE 0.959 -10.000 0.100 NA   NA
 269920 269921 SpyM3_1218 SpyM3_1219     TRUE 0.939 4.000 0.150 NA   NA
 269921 269922 SpyM3_1219 SpyM3_1220     TRUE 0.981 39.000 1.000 NA   NA
 269922 269923 SpyM3_1220 SpyM3_1221     TRUE 0.994 0.000 1.000 NA   NA
 269923 269924 SpyM3_1221 SpyM3_1222     TRUE 0.968 -3.000 0.188 NA   NA
 269924 269925 SpyM3_1222 SpyM3_1223     TRUE 0.983 0.000 0.438 NA   NA
 269925 269926 SpyM3_1223 SpyM3_1224     TRUE 0.984 -40.000 0.333 NA   NA
 269926 269927 SpyM3_1224 SpyM3_1225     TRUE 0.600 54.000 0.000 NA   NA
 269927 269928 SpyM3_1225 SpyM3_1226     TRUE 0.847 4.000 0.000 NA   NA
 269928 269929 SpyM3_1226 SpyM3_1227     FALSE 0.161 132.000 0.000 NA   NA
 269929 269930 SpyM3_1227 SpyM3_1228     TRUE 0.549 62.000 0.000 NA   NA
 269930 269931 SpyM3_1228 SpyM3_1229     TRUE 0.914 -28.000 0.000 NA   NA
 269931 269932 SpyM3_1229 SpyM3_1230     TRUE 0.982 5.000 0.567 NA   NA
 269932 269933 SpyM3_1230 SpyM3_1231     TRUE 0.921 14.000 0.167 NA   NA
 269933 269934 SpyM3_1231 SpyM3_1232     TRUE 0.663 83.000 0.182 NA   NA
 269934 269935 SpyM3_1232 SpyM3_1233     TRUE 0.615 51.000 0.000 NA   NA
 269935 269936 SpyM3_1233 SpyM3_1234     TRUE 0.557 61.000 0.000 NA   NA
 269936 269937 SpyM3_1234 SpyM3_1235     FALSE 0.190 123.000 0.000 NA   NA
 269937 269938 SpyM3_1235 SpyM3_1236     TRUE 0.889 -21.000 0.000 1.000   NA
 269940 269941 SpyM3_1238 SpyM3_1239     FALSE 0.243 110.000 0.000 NA   NA
 269941 269942 SpyM3_1239 SpyM3_1240     FALSE 0.171 128.000 0.000 NA   NA
 269942 269943 SpyM3_1240 SpyM3_1241     FALSE 0.028 441.000 0.000 NA   NA
 269943 269944 SpyM3_1241 SpyM3_1242     TRUE 0.900 -3.000 0.000 NA   NA
 269944 269945 SpyM3_1242 SpyM3_1243     TRUE 0.900 -3.000 0.000 NA   NA
 269945 269946 SpyM3_1243 SpyM3_1244     TRUE 0.825 10.000 0.000 NA   NA
 269946 269947 SpyM3_1244 SpyM3_1245     TRUE 0.900 -3.000 0.000 NA   NA
 269947 269948 SpyM3_1245 SpyM3_1246     TRUE 0.908 -6.000 0.000 NA   NA
 269948 269949 SpyM3_1246 SpyM3_1247     TRUE 0.995 -3.000 1.000 NA   NA
 269949 269950 SpyM3_1247 SpyM3_1248     TRUE 0.929 -3.000 0.018 NA   NA
 269950 269951 SpyM3_1248 SpyM3_1249     FALSE 0.180 209.000 0.000 1.000 Y NA
 269951 269952 SpyM3_1249 SpyM3_1250     TRUE 0.961 -7.000 0.125 NA   NA
 269952 269953 SpyM3_1250 SpyM3_1251     TRUE 0.942 1.000 0.125 NA   NA
 269953 269954 SpyM3_1251 SpyM3_1252     TRUE 0.939 22.000 0.286 NA   NA
 269954 269955 SpyM3_1252 SpyM3_1253     FALSE 0.143 148.000 0.000 NA   NA
 269955 269956 SpyM3_1253 SpyM3_1254     TRUE 0.914 -19.000 0.000 NA   NA
 269956 269957 SpyM3_1254 SpyM3_1255     FALSE 0.257 122.000 0.018 NA   NA
 269957 269958 SpyM3_1255 SpyM3_1256     FALSE 0.285 100.000 0.000 NA   NA
 269958 269959 SpyM3_1256 SpyM3_1257     TRUE 0.727 29.000 0.000 NA   NA
 269959 269960 SpyM3_1257 SpyM3_1258     FALSE 0.129 159.000 0.000 NA   NA
 269962 269963 SpyM3_1260 SpyM3_1261     TRUE 0.707 33.000 0.000 NA   NA
 269963 269964 SpyM3_1261 SpyM3_1262     TRUE 0.933 11.000 0.000 0.053   NA
 269965 269966 SpyM3_1263 SpyM3_1264     TRUE 0.989 14.000 1.000 NA   NA
 269966 269967 SpyM3_1264 SpyM3_1265     TRUE 0.816 11.000 0.000 NA   NA
 269967 269968 SpyM3_1265 SpyM3_1266   int315.4 FALSE 0.203 119.000 0.000 NA   NA
 269969 269970 SpyM3_1267 SpyM3_1268 msrA.1   TRUE 0.985 43.000 0.875 1.000 Y NA
 269970 269971 SpyM3_1268 SpyM3_1269   ccdA TRUE 0.984 13.000 0.500 1.000 Y NA
 269971 269972 SpyM3_1269 SpyM3_1270 ccdA   FALSE 0.160 221.000 0.000 0.065 N NA
 269972 269973 SpyM3_1270 SpyM3_1271     TRUE 0.733 92.000 0.375 1.000   NA
 269975 269976 SpyM3_1273 SpyM3_1274 valS   TRUE 0.886 2.000 0.008 NA   NA
 269976 269977 SpyM3_1274 SpyM3_1275     TRUE 0.835 25.000 0.053 NA   NA
 269977 269978 SpyM3_1275 SpyM3_1276     TRUE 0.900 -3.000 0.000 NA   NA
 269978 269979 SpyM3_1276 SpyM3_1277     FALSE 0.026 476.000 0.000 NA   NA
 269979 269980 SpyM3_1277 SpyM3_1278     TRUE 0.765 21.000 0.000 NA   NA
 400257 269981 SpyM3_t49 SpyM3_1279 tRNA-Thr aroA.2 FALSE 0.072 242.000 0.000 NA   NA
 269981 269982 SpyM3_1279 SpyM3_1280 aroA.2 aroB TRUE 0.947 56.000 0.003 0.003 Y NA
 269983 269984 SpyM3_1281 SpyM3_1282     TRUE 0.861 2.000 0.000 NA   NA
 269984 269985 SpyM3_1282 SpyM3_1283     TRUE 0.697 53.000 0.026 NA   NA
 269985 269986 SpyM3_1283 SpyM3_1284   aroE.1 FALSE 0.026 253.000 0.000 1.000 N NA
 269986 269987 SpyM3_1284 SpyM3_1285 aroE.1   FALSE 0.147 138.000 0.061 1.000 N NA
 269987 269988 SpyM3_1285 SpyM3_1286     TRUE 0.857 20.000 0.167 1.000 N NA
 269988 269989 SpyM3_1286 SpyM3_1287     TRUE 0.994 0.000 0.167 0.010 Y NA
 269989 269990 SpyM3_1287 SpyM3_1288     TRUE 0.993 -10.000 0.667 NA   NA
 269990 269991 SpyM3_1288 SpyM3_1289     FALSE 0.047 306.000 0.000 NA   NA
 269991 269992 SpyM3_1289 SpyM3_1290     TRUE 0.952 81.000 0.333 0.032 Y NA
 269992 269993 SpyM3_1290 SpyM3_1291     TRUE 0.998 10.000 0.917 0.032 Y NA
 269995 269996 SpyM3_1293 SpyM3_1294   hyl TRUE 0.693 24.000 0.000 1.000   NA
 269996 269997 SpyM3_1294 SpyM3_1295 hyl   TRUE 0.546 51.000 0.000 1.000   NA
 269998 269999 SpyM3_1296 SpyM3_1297     TRUE 0.915 15.000 0.194 1.000   NA
 270000 270001 SpyM3_1298 SpyM3_1299     FALSE 0.012 665.000 0.000 NA N NA
 270001 270002 SpyM3_1299 SpyM3_1300     FALSE 0.105 191.000 0.000 NA   NA
 270004 270005 SpyM3_1302 SpyM3_1303     TRUE 0.881 0.000 0.000 NA   NA
 270005 270006 SpyM3_1303 SpyM3_1304     TRUE 0.825 10.000 0.000 NA   NA
 270006 270007 SpyM3_1304 SpyM3_1305     TRUE 0.816 11.000 0.000 NA   NA
 270007 270008 SpyM3_1305 SpyM3_1306     TRUE 0.809 12.000 0.000 NA   NA
 270008 270009 SpyM3_1306 SpyM3_1307     TRUE 0.861 2.000 0.000 NA   NA
 270009 270010 SpyM3_1307 SpyM3_1308     FALSE 0.040 336.000 0.000 NA   NA
 270010 270011 SpyM3_1308 SpyM3_1309     TRUE 0.996 -28.000 1.000 NA   NA
 270011 270012 SpyM3_1309 SpyM3_1310     TRUE 0.958 11.000 0.300 NA   NA
 270012 270013 SpyM3_1310 SpyM3_1311     FALSE 0.295 98.000 0.000 NA   NA
 270013 270014 SpyM3_1311 SpyM3_1312     TRUE 0.971 1.000 0.333 1.000   NA
 270014 270015 SpyM3_1312 SpyM3_1313     TRUE 0.942 1.000 0.125 NA   NA
 270015 270016 SpyM3_1313 SpyM3_1314     TRUE 0.992 -7.000 0.625 NA   NA
 270016 270017 SpyM3_1314 SpyM3_1315     TRUE 0.996 -27.000 0.929 NA   NA
 270017 270018 SpyM3_1315 SpyM3_1316     TRUE 0.894 13.000 0.134 1.000   NA
 270018 270019 SpyM3_1316 SpyM3_1317     TRUE 0.879 12.000 0.052 NA   NA
 270019 270020 SpyM3_1317 SpyM3_1318     TRUE 0.991 2.000 0.800 NA   NA
 270020 270021 SpyM3_1318 SpyM3_1319     TRUE 0.833 9.000 0.000 NA   NA
 270021 270022 SpyM3_1319 SpyM3_1320     TRUE 0.900 -3.000 0.000 NA   NA
 270022 270023 SpyM3_1320 SpyM3_1321     TRUE 0.812 14.000 0.002 NA   NA
 270023 270024 SpyM3_1321 SpyM3_1322     TRUE 0.819 13.000 0.002 NA   NA
 270024 270025 SpyM3_1322 SpyM3_1323     TRUE 0.961 18.000 0.400 NA   NA
 270025 270026 SpyM3_1323 SpyM3_1324     FALSE 0.140 150.000 0.000 NA   NA
 270026 270027 SpyM3_1324 SpyM3_1325     TRUE 0.836 7.000 0.000 NA   NA
 270027 270028 SpyM3_1325 SpyM3_1326     TRUE 0.976 -31.000 0.214 NA   NA
 270028 270029 SpyM3_1326 SpyM3_1327     TRUE 0.840 36.000 0.118 NA   NA
 270029 270030 SpyM3_1327 SpyM3_1328     TRUE 0.414 187.000 0.000 0.003   NA
 270030 270031 SpyM3_1328 SpyM3_1329     TRUE 0.954 -34.000 0.118 1.000   NA
 270031 270032 SpyM3_1329 SpyM3_1330     FALSE 0.022 634.000 0.000 NA   NA
 270032 270033 SpyM3_1330 SpyM3_1331     FALSE 0.027 451.000 0.000 NA   NA
 270033 270034 SpyM3_1331 SpyM3_1332     FALSE 0.052 287.000 0.000 NA   NA
 270034 270035 SpyM3_1332 SpyM3_1333     FALSE 0.124 166.000 0.000 NA   NA
 270035 270036 SpyM3_1333 SpyM3_1334     FALSE 0.054 284.000 0.000 NA   NA
 270036 270037 SpyM3_1334 SpyM3_1335     TRUE 0.900 -3.000 0.000 NA   NA
 270037 270038 SpyM3_1335 SpyM3_1336     TRUE 0.900 -3.000 0.000 NA   NA
 270038 270039 SpyM3_1336 SpyM3_1337     FALSE 0.072 242.000 0.000 NA   NA
 270039 270040 SpyM3_1337 SpyM3_1338     TRUE 0.914 -16.000 0.000 NA   NA
 270040 270041 SpyM3_1338 SpyM3_1339     FALSE 0.070 245.000 0.000 NA   NA
 270041 270042 SpyM3_1339 SpyM3_1340     TRUE 0.630 48.000 0.000 NA   NA
 270042 270043 SpyM3_1340 SpyM3_1341     TRUE 0.970 -10.000 0.167 NA   NA
 270043 270044 SpyM3_1341 SpyM3_1342     TRUE 0.904 12.000 0.100 NA   NA
 270044 270045 SpyM3_1342 SpyM3_1343     TRUE 0.782 16.000 0.000 NA   NA
 270045 270046 SpyM3_1343 SpyM3_1344     FALSE 0.276 102.000 0.000 NA   NA
 270046 270047 SpyM3_1344 SpyM3_1345     TRUE 0.970 1.000 0.286 NA   NA
 270047 270048 SpyM3_1345 SpyM3_1346     FALSE 0.077 229.000 0.000 NA   NA
 270048 270049 SpyM3_1346 SpyM3_1347     TRUE 0.782 16.000 0.000 NA   NA
 270049 270050 SpyM3_1347 SpyM3_1348     TRUE 0.718 31.000 0.000 NA   NA
 270050 270051 SpyM3_1348 SpyM3_1349     FALSE 0.312 95.000 0.000 NA   NA
 270052 270053 SpyM3_1350 SpyM3_1351     TRUE 0.984 -16.000 0.333 NA   NA
 270053 270054 SpyM3_1351 SpyM3_1352     TRUE 0.816 11.000 0.000 NA   NA
 270054 270055 SpyM3_1352 SpyM3_1353     FALSE 0.059 269.000 0.000 NA   NA
 270055 270056 SpyM3_1353 SpyM3_1354   int315.5 FALSE 0.118 174.000 0.000 NA   NA
 270056 270057 SpyM3_1354 SpyM3_1355 int315.5   FALSE 0.128 148.000 0.003 1.000   NA
 270057 270058 SpyM3_1355 SpyM3_1356     TRUE 0.513 80.000 0.025 NA   NA
 270058 270059 SpyM3_1356 SpyM3_1357     FALSE 0.032 370.000 0.000 NA   NA
 400275 400274 SpyM3_t50 SpyM3_t51 tRNA-Glu tRNA-Ile TRUE 0.754 23.000 0.000 NA   NA
 400274 400273 SpyM3_t51 SpyM3_t52 tRNA-Ile tRNA-Thr TRUE 0.689 36.000 0.000 NA   NA
 400273 400272 SpyM3_t52 SpyM3_t53 tRNA-Thr tRNA-Leu TRUE 0.816 11.000 0.000 NA   NA
 400272 400271 SpyM3_t53 SpyM3_t54 tRNA-Leu tRNA-Lys TRUE 0.839 6.000 0.000 NA   NA
 400271 400270 SpyM3_t54 SpyM3_t55 tRNA-Lys tRNA-Asp TRUE 0.713 32.000 0.000 NA   NA
 400270 400269 SpyM3_t55 SpyM3_t56 tRNA-Asp tRNA-Val TRUE 0.778 18.000 0.000 NA   NA
 400269 2179446 SpyM3_t56 SpyM3_r17 tRNA-Val   TRUE 0.778 18.000 0.000 NA   NA
 2179446 2179447 SpyM3_r17 SpyM3_r09     FALSE 0.388 82.000 0.000 NA   NA
 2179447 400268 SpyM3_r09 SpyM3_t57   tRNA-Ala FALSE 0.050 296.000 0.000 NA   NA
 400268 2179448 SpyM3_t57 SpyM3_r10 tRNA-Ala   TRUE 0.656 45.000 0.000 NA   NA
 2179448 270060 SpyM3_r10 SpyM3_1358     FALSE 0.019 911.000 0.000 NA   NA
 270060 270061 SpyM3_1358 SpyM3_1359   comFC TRUE 0.589 80.000 0.080 NA   NA
 270061 270062 SpyM3_1359 SpyM3_1360 comFC   TRUE 0.963 -28.000 0.130 NA   NA
 270062 270063 SpyM3_1360 SpyM3_1361     TRUE 0.735 27.000 0.000 NA   NA
 270064 270065 SpyM3_1362 SpyM3_1363   cysM FALSE 0.205 128.000 0.033 1.000   NA
 270066 270067 SpyM3_1364 SpyM3_1365     TRUE 0.945 0.000 0.151 1.000   NA
 270067 270068 SpyM3_1365 SpyM3_1366     TRUE 0.842 37.000 0.164 1.000   NA
 270068 270069 SpyM3_1366 SpyM3_1367     TRUE 0.999 -7.000 0.853 0.010 Y NA
 270069 270070 SpyM3_1367 SpyM3_1368     TRUE 0.992 -3.000 0.679 NA   NA
 270070 270071 SpyM3_1368 SpyM3_1369     FALSE 0.274 123.000 0.039 NA   NA
 270071 270072 SpyM3_1369 SpyM3_1370   pppL TRUE 0.995 -3.000 0.704 1.000 Y NA
 270072 270073 SpyM3_1370 SpyM3_1371 pppL sunL TRUE 0.691 38.000 0.074 1.000 N NA
 270073 270074 SpyM3_1371 SpyM3_1372 sunL fmt TRUE 0.990 -10.000 0.305 1.000 Y NA
 270074 270075 SpyM3_1372 SpyM3_1373 fmt priA TRUE 0.516 62.000 0.052 1.000 N NA
 270075 270076 SpyM3_1373 SpyM3_1374 priA   TRUE 0.779 65.000 0.032 0.051 N NA
 270076 270077 SpyM3_1374 SpyM3_1375   gmk TRUE 0.951 16.000 0.471 1.000 N NA
 270077 270078 SpyM3_1375 SpyM3_1376 gmk   FALSE 0.243 110.000 0.010 1.000   NA
 270078 270079 SpyM3_1376 SpyM3_1377     FALSE 0.157 130.000 0.006 1.000   NA
 270080 270081 SpyM3_1378 SpyM3_1379 atoB atoD.1 TRUE 0.673 99.000 0.150 1.000 Y NA
 270081 270082 SpyM3_1379 SpyM3_1380 atoD.1 atoA TRUE 0.995 2.000 0.200 0.002 Y NA
 270082 270083 SpyM3_1380 SpyM3_1381 atoA   TRUE 0.895 33.000 0.000 0.039   NA
 270083 270084 SpyM3_1381 SpyM3_1382     TRUE 0.859 73.000 0.000 0.001   NA
 270084 270085 SpyM3_1382 SpyM3_1383     TRUE 0.779 71.000 0.333 1.000 N NA
 270085 270086 SpyM3_1383 SpyM3_1384   luxS TRUE 0.849 -16.000 0.006 1.000 N NA
 270087 270088 SpyM3_1385 SpyM3_1386     TRUE 0.853 14.000 0.029 NA   NA
 270088 270089 SpyM3_1386 SpyM3_1387     FALSE 0.027 445.000 0.000 NA   NA
 270089 270090 SpyM3_1387 SpyM3_1388     TRUE 0.738 119.000 0.579 NA   NA
 270091 270092 SpyM3_1389 SpyM3_1390 recU pbp1A TRUE 0.980 -13.000 0.319 1.000   NA
 270093 270094 SpyM3_1391 SpyM3_1392 pepC nadE FALSE 0.076 185.000 0.017 1.000 N NA
 270094 270095 SpyM3_1392 SpyM3_1393 nadE   TRUE 0.996 -3.000 0.194 0.003 Y NA
 270095 270096 SpyM3_1393 SpyM3_1394   aapA FALSE 0.094 170.000 0.032 1.000 N NA
 270096 270097 SpyM3_1394 SpyM3_1395 aapA nox.2 FALSE 0.096 169.000 0.033 1.000 N NA
 270097 270098 SpyM3_1395 SpyM3_1396 nox.2   TRUE 0.731 64.000 0.117 NA   NA
 270098 270099 SpyM3_1396 SpyM3_1397     TRUE 0.694 104.000 0.364 NA   NA
 270099 270100 SpyM3_1397 SpyM3_1398     TRUE 0.986 0.000 0.310 1.000 Y NA
 270100 270101 SpyM3_1398 SpyM3_1399     FALSE 0.072 195.000 0.018 1.000 N NA
 270101 270102 SpyM3_1399 SpyM3_1400   mraY FALSE 0.075 158.000 0.007 1.000 N NA
 270102 270103 SpyM3_1400 SpyM3_1401 mraY pbp2X TRUE 0.951 2.000 0.038 1.000 Y NA
 270103 270104 SpyM3_1401 SpyM3_1402 pbp2X ftsL TRUE 0.724 91.000 0.456 1.000 N NA
 270104 270105 SpyM3_1402 SpyM3_1403 ftsL mraW TRUE 0.918 -25.000 0.077 1.000 N NA
 270105 270106 SpyM3_1403 SpyM3_1404 mraW   TRUE 0.749 24.000 0.000 NA   NA
 270106 270107 SpyM3_1404 SpyM3_1405     FALSE 0.276 102.000 0.000 NA   NA
 270107 270108 SpyM3_1405 SpyM3_1406   proA TRUE 0.914 -19.000 0.000 NA   NA
 270108 270109 SpyM3_1406 SpyM3_1407 proA proB TRUE 0.997 -7.000 0.281 0.002 Y NA
 270109 270110 SpyM3_1407 SpyM3_1408 proB   FALSE 0.106 190.000 0.000 NA   NA
 270112 270113 SpyM3_1410 SpyM3_1411     FALSE 0.062 262.000 0.000 NA   NA
 270113 270114 SpyM3_1411 SpyM3_1412     FALSE 0.055 280.000 0.000 NA   NA
 270114 270115 SpyM3_1412 SpyM3_1413     FALSE 0.218 116.000 0.000 NA   NA
 270115 270116 SpyM3_1413 SpyM3_1414     TRUE 0.900 -3.000 0.000 NA   NA
 270116 270117 SpyM3_1414 SpyM3_1415     TRUE 0.825 10.000 0.000 NA   NA
 270117 270118 SpyM3_1415 SpyM3_1416     TRUE 0.900 -3.000 0.000 NA   NA
 270118 270119 SpyM3_1416 SpyM3_1417     TRUE 0.990 12.000 1.000 NA   NA
 270119 270120 SpyM3_1417 SpyM3_1418   hylP.6 TRUE 0.781 10.000 0.000 1.000   NA
 270120 270121 SpyM3_1418 SpyM3_1419 hylP.6   TRUE 0.900 -3.000 0.000 NA   NA
 270121 270122 SpyM3_1419 SpyM3_1420     TRUE 0.825 10.000 0.000 NA   NA
 270122 270123 SpyM3_1420 SpyM3_1421     TRUE 0.967 12.000 0.400 NA   NA
 270123 270124 SpyM3_1421 SpyM3_1422     TRUE 0.963 15.000 0.400 NA   NA
 270124 270125 SpyM3_1422 SpyM3_1423     TRUE 0.780 75.000 0.235 NA   NA
 270125 270126 SpyM3_1423 SpyM3_1424     TRUE 0.734 54.000 0.062 NA   NA
 270126 270127 SpyM3_1424 SpyM3_1425     TRUE 0.874 12.000 0.041 NA   NA
 270127 270128 SpyM3_1425 SpyM3_1426     TRUE 0.990 4.000 0.800 NA   NA
 270128 270129 SpyM3_1426 SpyM3_1427     TRUE 0.983 15.000 0.750 NA   NA
 270129 270130 SpyM3_1427 SpyM3_1428     TRUE 0.983 11.000 0.667 NA   NA
 270130 270131 SpyM3_1428 SpyM3_1429     TRUE 0.975 12.000 0.500 NA   NA
 270131 270132 SpyM3_1429 SpyM3_1430     TRUE 0.932 13.000 0.192 NA   NA
 270132 270133 SpyM3_1430 SpyM3_1431     FALSE 0.219 168.000 0.077 NA   NA
 270133 270134 SpyM3_1431 SpyM3_1432     TRUE 0.992 5.000 1.000 NA   NA
 270134 270135 SpyM3_1432 SpyM3_1433     TRUE 0.892 28.000 0.167 NA   NA
 270135 270136 SpyM3_1433 SpyM3_1434     TRUE 0.979 -40.000 0.250 NA   NA
 270136 270137 SpyM3_1434 SpyM3_1435     TRUE 0.847 79.000 0.429 NA   NA
 270137 270138 SpyM3_1435 SpyM3_1436     TRUE 0.993 -10.000 0.176 0.003   NA
 270138 270139 SpyM3_1436 SpyM3_1437     TRUE 0.452 111.000 0.176 1.000   NA
 270139 270140 SpyM3_1437 SpyM3_1438     FALSE 0.159 133.000 0.000 NA   NA
 270140 270141 SpyM3_1438 SpyM3_1439     TRUE 0.910 -7.000 0.000 NA   NA
 270141 270142 SpyM3_1439 SpyM3_1440     TRUE 0.984 1.000 0.500 NA   NA
 270142 270143 SpyM3_1440 SpyM3_1441     TRUE 0.978 -3.000 0.286 NA   NA
 270143 270144 SpyM3_1441 SpyM3_1442     FALSE 0.034 366.000 0.000 NA   NA
 270144 270145 SpyM3_1442 SpyM3_1443   polA.2 TRUE 0.925 5.000 0.111 NA   NA
 270145 270146 SpyM3_1443 SpyM3_1444 polA.2   TRUE 0.897 43.000 0.250 NA   NA
 270146 270147 SpyM3_1444 SpyM3_1445     TRUE 0.979 14.000 0.643 NA   NA
 270147 270148 SpyM3_1445 SpyM3_1446     TRUE 0.952 0.000 0.143 NA   NA
 270148 270149 SpyM3_1446 SpyM3_1447     TRUE 0.929 88.000 1.000 NA   NA
 270149 270150 SpyM3_1447 SpyM3_1448     TRUE 0.900 -3.000 0.000 NA   NA
 270150 270151 SpyM3_1448 SpyM3_1449     TRUE 0.900 -3.000 0.000 NA   NA
 270151 270152 SpyM3_1449 SpyM3_1450     TRUE 0.971 31.000 0.667 NA   NA
 270152 270153 SpyM3_1450 SpyM3_1451     TRUE 0.996 -7.000 1.000 NA   NA
 270153 270154 SpyM3_1451 SpyM3_1452     TRUE 0.727 29.000 0.000 NA   NA
 270154 270155 SpyM3_1452 SpyM3_1453     FALSE 0.356 88.000 0.000 NA   NA
 270155 270156 SpyM3_1453 SpyM3_1454     TRUE 0.765 21.000 0.000 NA   NA
 270157 270158 SpyM3_1455 SpyM3_1456     TRUE 0.793 14.000 0.000 NA   NA
 270158 270159 SpyM3_1456 SpyM3_1457     TRUE 0.816 11.000 0.000 NA   NA
 270159 270160 SpyM3_1457 SpyM3_1458   int315.6 FALSE 0.117 176.000 0.000 NA   NA
 270161 270162 SpyM3_1459 SpyM3_1460     TRUE 0.970 5.000 0.341 NA   NA
 270162 270163 SpyM3_1460 SpyM3_1461     TRUE 0.680 76.000 0.136 NA   NA
 270163 270164 SpyM3_1461 SpyM3_1462   tkt FALSE 0.376 193.000 0.300 NA   NA
 270164 270165 SpyM3_1462 SpyM3_1463 tkt tal FALSE 0.169 218.000 0.000 1.000 Y NA
 270165 270166 SpyM3_1463 SpyM3_1464 tal   FALSE 0.178 126.000 0.000 NA   NA
 270166 270167 SpyM3_1464 SpyM3_1465   npx TRUE 0.988 -10.000 0.462 NA   NA
 270167 270168 SpyM3_1465 SpyM3_1466 npx glpF.1 TRUE 0.951 16.000 0.364 1.000   NA
 270168 270169 SpyM3_1466 SpyM3_1467 glpF.1 glpO TRUE 0.974 2.000 0.500 1.000 N NA
 270169 270170 SpyM3_1467 SpyM3_1468 glpO glpK TRUE 0.996 16.000 0.500 0.001 Y NA
 270170 270171 SpyM3_1468 SpyM3_1469 glpK   FALSE 0.027 359.000 0.000 1.000   NA
 270171 270172 SpyM3_1469 SpyM3_1470     FALSE 0.244 127.000 0.029 NA   NA
 270172 270173 SpyM3_1470 SpyM3_1471   glyS FALSE 0.183 154.000 0.020 NA   NA
 270173 270174 SpyM3_1471 SpyM3_1472 glyS glyQ TRUE 0.773 367.000 0.651 0.001 Y NA
 270174 270175 SpyM3_1472 SpyM3_1473 glyQ   FALSE 0.024 372.000 0.000 1.000   NA
 270175 270176 SpyM3_1473 SpyM3_1474     FALSE 0.190 162.000 0.074 1.000   NA
 270176 270177 SpyM3_1474 SpyM3_1475   nagA FALSE 0.242 122.000 0.045 1.000   NA
 270177 270178 SpyM3_1475 SpyM3_1476 nagA   FALSE 0.230 118.000 0.090 1.000 N NA
 270182 270183 SpyM3_1480 SpyM3_1481     TRUE 0.912 2.000 0.047 NA   NA
 270183 270184 SpyM3_1481 SpyM3_1482   lacD.1 FALSE 0.127 209.000 0.019 NA   NA
 270184 270185 SpyM3_1482 SpyM3_1483 lacD.1 lacC.1 TRUE 0.506 150.000 0.000 0.002   NA
 270185 270186 SpyM3_1483 SpyM3_1484 lacC.1 lacB.1 TRUE 0.781 10.000 0.000 1.000   NA
 270186 270187 SpyM3_1484 SpyM3_1485 lacB.1 lacA.1 TRUE 0.996 15.000 0.500 0.002 Y NA
 270187 270188 SpyM3_1485 SpyM3_1486 lacA.1   FALSE 0.129 257.000 0.000 1.000 Y NA
 270188 270189 SpyM3_1486 SpyM3_1487     TRUE 0.962 26.000 0.000 0.017 Y NA
 270189 270190 SpyM3_1487 SpyM3_1488     TRUE 0.998 -7.000 0.429 0.012 Y NA
 270192 270193 SpyM3_1490 SpyM3_1491 copZ copA TRUE 0.984 14.000 0.048 0.003 Y NA
 270193 270194 SpyM3_1491 SpyM3_1492 copA copY TRUE 0.878 0.000 0.064 1.000 N NA
 270196 270197 SpyM3_1494 SpyM3_1495 rbfA infB TRUE 0.630 206.000 0.530 1.000 Y NA
 270197 270198 SpyM3_1495 SpyM3_1496 infB   TRUE 0.867 77.000 0.223 NA Y NA
 270198 270199 SpyM3_1496 SpyM3_1497     TRUE 0.982 -7.000 0.408 NA N NA
 270199 270200 SpyM3_1497 SpyM3_1498   nusA TRUE 0.975 16.000 0.323 NA Y NA
 270200 270201 SpyM3_1498 SpyM3_1499 nusA   TRUE 0.679 175.000 0.759 NA   NA
 270201 400267 SpyM3_1499 SpyM3_t58   tRNA-Ser FALSE 0.249 108.000 0.000 NA   NA
 400267 270202 SpyM3_t58 SpyM3_1500 tRNA-Ser   TRUE 0.525 65.000 0.000 NA   NA
 270202 270203 SpyM3_1500 SpyM3_1501     TRUE 0.955 0.000 0.154 NA   NA
 270203 270204 SpyM3_1501 SpyM3_1502     TRUE 0.642 64.000 0.107 NA N NA
 270204 270205 SpyM3_1502 SpyM3_1503     TRUE 0.926 3.000 0.167 NA N NA
 270206 270207 SpyM3_1504 SpyM3_1505 hit   TRUE 0.944 -3.000 0.063 NA   NA
 270208 270209 SpyM3_1506 SpyM3_1507     TRUE 0.947 9.000 0.283 NA N NA
 270209 270210 SpyM3_1507 SpyM3_1508     TRUE 0.943 -25.000 0.033 NA   NA
 270210 270211 SpyM3_1508 SpyM3_1509     FALSE 0.160 154.000 0.008 NA   NA
 270212 270213 SpyM3_1510 SpyM3_1511   manL FALSE 0.029 352.000 0.000 1.000   NA
 270213 270214 SpyM3_1511 SpyM3_1512 manL manM TRUE 0.984 89.000 0.943 0.017 Y NA
 270214 270215 SpyM3_1512 SpyM3_1513 manM manN TRUE 0.997 17.000 0.812 0.017 Y NA
 270215 270216 SpyM3_1513 SpyM3_1514 manN   TRUE 0.973 21.000 0.583 NA   NA
 270216 270217 SpyM3_1514 SpyM3_1515     FALSE 0.043 321.000 0.000 NA   NA
 270217 270218 SpyM3_1515 SpyM3_1516   serS FALSE 0.011 405.000 0.000 1.000 N NA
 270219 270220 SpyM3_1517 SpyM3_1518 accA accD TRUE 0.997 -3.000 0.234 0.002 Y NA
 270220 270221 SpyM3_1518 SpyM3_1519 accD accC TRUE 0.990 9.000 0.090 0.002 Y NA
 270221 270222 SpyM3_1519 SpyM3_1520 accC fabZ TRUE 0.890 32.000 0.045 1.000 Y NA
 270222 270223 SpyM3_1520 SpyM3_1521 fabZ accB TRUE 0.992 -3.000 0.047 0.006 Y NA
 270223 270224 SpyM3_1521 SpyM3_1522 accB fabF TRUE 0.959 2.000 0.074 1.000 Y NA
 270224 270225 SpyM3_1522 SpyM3_1523 fabF fabG TRUE 0.927 15.000 0.056 1.000 Y NA
 270225 270226 SpyM3_1523 SpyM3_1524 fabG fabD TRUE 0.998 -10.000 0.432 0.006 Y NA
 270226 270227 SpyM3_1524 SpyM3_1525 fabD fabK TRUE 0.840 25.000 0.099 1.000   NA
 270227 270228 SpyM3_1525 SpyM3_1526 fabK acpP.2 FALSE 0.179 258.000 0.216 1.000   NA
 270228 270229 SpyM3_1526 SpyM3_1527 acpP.2 fabH TRUE 0.910 61.000 0.065 0.006   NA
 270229 270230 SpyM3_1527 SpyM3_1528 fabH   TRUE 0.871 1.000 0.070 1.000 N NA
 270230 270231 SpyM3_1528 SpyM3_1529   phaB TRUE 0.488 77.000 0.098 1.000 N NA
 270231 270232 SpyM3_1529 SpyM3_1530 phaB dnaJ FALSE 0.033 220.000 0.000 1.000 N NA
 270232 270233 SpyM3_1530 SpyM3_1531 dnaJ dnaK TRUE 0.700 227.000 0.196 0.003 Y NA
 270233 270234 SpyM3_1531 SpyM3_1532 dnaK grpE TRUE 0.630 180.000 0.026 0.006 Y NA
 270234 270235 SpyM3_1532 SpyM3_1533 grpE hrcA TRUE 0.834 3.000 0.051 1.000 N NA
 270235 270236 SpyM3_1533 SpyM3_1534 hrcA   FALSE 0.094 135.000 0.009 1.000 N NA
 270236 270237 SpyM3_1534 SpyM3_1535     TRUE 0.943 -3.000 0.174 1.000 N NA
 270237 270238 SpyM3_1535 SpyM3_1536     TRUE 0.951 -10.000 0.174 1.000 N NA
 270238 270239 SpyM3_1536 SpyM3_1537     FALSE 0.023 392.000 0.000 1.000   NA
 270239 270240 SpyM3_1537 SpyM3_1538     FALSE 0.084 219.000 0.000 NA   NA
 270240 270241 SpyM3_1538 SpyM3_1539   gatB TRUE 0.900 -3.000 0.000 NA   NA
 270241 270242 SpyM3_1539 SpyM3_1540 gatB gatA TRUE 0.998 0.000 0.492 0.002 Y NA
 270242 270243 SpyM3_1540 SpyM3_1541 gatA gatC TRUE 0.998 0.000 0.643 0.002 Y NA
 270243 270244 SpyM3_1541 SpyM3_1542 gatC   FALSE 0.066 231.000 0.002 1.000   NA
 270244 270245 SpyM3_1542 SpyM3_1543     FALSE 0.019 486.000 0.000 1.000   NA
 270245 270246 SpyM3_1543 SpyM3_1544   codY FALSE 0.158 147.000 0.083 1.000 N NA
 270246 270247 SpyM3_1544 SpyM3_1545 codY   FALSE 0.057 218.000 0.015 1.000 N NA
 270251 270252 SpyM3_1549 SpyM3_1550     TRUE 0.801 13.000 0.000 NA   NA
 270252 270253 SpyM3_1550 SpyM3_1551   recG FALSE 0.020 293.000 0.000 1.000 N NA
 270255 270256 SpyM3_1553 SpyM3_1554     TRUE 0.985 -63.000 0.429 1.000   NA
 270256 270257 SpyM3_1554 SpyM3_1555     TRUE 0.989 -3.000 0.562 NA   NA
 270257 270258 SpyM3_1555 SpyM3_1556   cycC TRUE 0.948 -3.000 0.081 NA   NA
 270258 270259 SpyM3_1556 SpyM3_1557 cycC cycD TRUE 0.997 -7.000 0.576 0.006 N NA
 270259 270260 SpyM3_1557 SpyM3_1558 cycD fhuC.2 TRUE 0.862 0.000 0.047 1.000 N NA
 270260 270261 SpyM3_1558 SpyM3_1559 fhuC.2 fhuG.2 TRUE 0.995 -3.000 0.657 1.000 Y NA
 270261 270262 SpyM3_1559 SpyM3_1560 fhuG.2 fhuD.2 TRUE 0.995 2.000 0.877 1.000 Y NA
 270262 270263 SpyM3_1560 SpyM3_1561 fhuD.2   FALSE 0.078 197.000 0.000 1.000   NA
 270263 270264 SpyM3_1561 SpyM3_1562   isp.2 FALSE 0.026 475.000 0.000 NA   NA
 270264 270265 SpyM3_1562 SpyM3_1563 isp.2 alr FALSE 0.285 117.000 0.022 NA   NA
 270265 270266 SpyM3_1563 SpyM3_1564 alr acpS TRUE 0.912 -3.000 0.093 1.000 N NA
 270266 270267 SpyM3_1564 SpyM3_1565 acpS secA FALSE 0.134 116.000 0.008 1.000 N NA
 270267 270268 SpyM3_1565 SpyM3_1566 secA pmi FALSE 0.132 134.000 0.042 1.000 N NA
 270268 270269 SpyM3_1566 SpyM3_1567 pmi scrK TRUE 0.819 95.000 0.333 1.000 Y NA
 270269 270270 SpyM3_1567 SpyM3_1568 scrK ndoS FALSE 0.046 264.000 0.000 1.000   NA
 270270 270271 SpyM3_1568 SpyM3_1569 ndoS scrA FALSE 0.058 231.000 0.000 1.000   NA
 270272 270273 SpyM3_1570 SpyM3_1571 scrB scrR TRUE 0.607 125.000 0.571 1.000 N NA
 270274 270275 SpyM3_1572 SpyM3_1573 nusB   TRUE 0.979 -7.000 0.265 NA   NA
 270275 270276 SpyM3_1573 SpyM3_1574   efp TRUE 0.738 46.000 0.031 NA   NA
 270276 270277 SpyM3_1574 SpyM3_1575 efp comEB FALSE 0.181 96.000 0.005 1.000 N NA
 270277 270278 SpyM3_1575 SpyM3_1576 comEB pepP TRUE 0.609 35.000 0.018 1.000 N NA
 270278 270279 SpyM3_1576 SpyM3_1577 pepP uvrA FALSE 0.133 116.000 0.008 1.000 N NA
 270280 270281 SpyM3_1578 SpyM3_1579     FALSE 0.274 132.000 0.072 NA   NA
 270282 270283 SpyM3_1580 SpyM3_1581 rpsR ssb.2 FALSE 0.079 165.000 0.012 1.000 N NA
 270283 270284 SpyM3_1581 SpyM3_1582 ssb.2 rpsF TRUE 0.650 22.000 0.012 1.000 N NA
 270284 270285 SpyM3_1582 SpyM3_1583 rpsF   FALSE 0.119 173.000 0.000 NA   NA
 270286 270287 SpyM3_1584 SpyM3_1585 mutY   FALSE 0.058 177.000 0.002 1.000 N NA
 270288 270289 SpyM3_1586 SpyM3_1587 trx.2   TRUE 0.484 81.000 0.053 1.000   NA
 270289 270290 SpyM3_1587 SpyM3_1588   mutS.1 TRUE 0.836 4.000 0.005 1.000   NA
 270290 270291 SpyM3_1588 SpyM3_1589 mutS.1   TRUE 0.797 32.000 0.070 1.000   NA
 270291 270292 SpyM3_1589 SpyM3_1590     TRUE 0.894 3.000 0.019 NA   NA
 270293 270294 SpyM3_1591 SpyM3_1592   spi TRUE 0.828 11.000 0.080 1.000 N NA
 270294 270295 SpyM3_1592 SpyM3_1593 spi recD TRUE 0.620 58.000 0.099 1.000 N NA
 270295 270296 SpyM3_1593 SpyM3_1594 recD   TRUE 0.456 92.000 0.050 NA   NA
 270299 270300 SpyM3_1597 SpyM3_1598   cppA TRUE 0.983 -15.000 0.326 NA   NA
 270302 270303 SpyM3_1600 SpyM3_1601 glpF.2 norA FALSE 0.197 403.000 0.000 0.029 Y NA
 270304 270305 SpyM3_1602 SpyM3_1603   pepXP TRUE 0.839 22.000 0.081 1.000   NA
 270307 270308 SpyM3_1605 SpyM3_1606     FALSE 0.116 193.000 0.002 NA   NA
 270309 270310 SpyM3_1607 SpyM3_1608   dnaQ FALSE 0.207 153.000 0.156 1.000 N NA
 270310 270311 SpyM3_1608 SpyM3_1609 dnaQ   TRUE 0.894 10.000 0.057 NA   NA
 270313 270314 SpyM3_1611 SpyM3_1612 deoC nupC TRUE 0.963 30.000 0.333 1.000 Y NA
 270314 270315 SpyM3_1612 SpyM3_1613 nupC udp TRUE 0.901 21.000 0.015 1.000 Y NA
 270316 270317 SpyM3_1614 SpyM3_1615   rpsN.2 FALSE 0.033 220.000 0.000 1.000 N NA
 270318 270319 SpyM3_1616 SpyM3_1617 gcp   TRUE 0.888 -10.000 0.000 1.000   NA
 270319 270320 SpyM3_1617 SpyM3_1618     TRUE 0.889 -28.000 0.000 1.000   NA
 270321 270322 SpyM3_1619 SpyM3_1620     TRUE 0.986 2.000 0.576 NA   NA
 270323 270324 SpyM3_1621 SpyM3_1622 glnA glnR TRUE 0.803 38.000 0.179 1.000 N NA
 270324 270325 SpyM3_1622 SpyM3_1623 glnR   TRUE 0.750 67.000 0.154 NA   NA
 270325 270326 SpyM3_1623 SpyM3_1624   pgk FALSE 0.068 263.000 0.002 NA   NA
 270326 270327 SpyM3_1624 SpyM3_1625 pgk lppC FALSE 0.092 193.000 0.003 1.000   NA
 270327 270328 SpyM3_1625 SpyM3_1626 lppC   FALSE 0.059 230.000 0.000 1.000   NA
 270328 270329 SpyM3_1626 SpyM3_1627     FALSE 0.069 237.000 0.006 1.000   NA
 270329 270330 SpyM3_1627 SpyM3_1628   asp TRUE 0.962 33.000 0.567 NA   NA
 270330 270331 SpyM3_1628 SpyM3_1629 asp rpmB FALSE 0.207 152.000 0.044 NA   NA
 270331 270332 SpyM3_1629 SpyM3_1630 rpmB fba FALSE 0.012 382.000 0.000 1.000 N NA
 270332 400266 SpyM3_1630 SpyM3_t59 fba tRNA-Leu FALSE 0.093 208.000 0.000 NA   NA
 400266 270333 SpyM3_t59 SpyM3_1631 tRNA-Leu   TRUE 0.600 54.000 0.000 NA   NA
 270333 270334 SpyM3_1631 SpyM3_1632   pyrG FALSE 0.107 168.000 0.002 1.000   NA
 270334 270335 SpyM3_1632 SpyM3_1633 pyrG rpoE FALSE 0.048 257.000 0.029 1.000 N NA
 270335 270336 SpyM3_1633 SpyM3_1634 rpoE ropA FALSE 0.046 217.000 0.005 1.000 N NA
 270338 270339 SpyM3_1636 SpyM3_1637     TRUE 0.913 14.000 0.149 NA   NA
 270339 270340 SpyM3_1637 SpyM3_1638   thiD TRUE 0.829 68.000 0.276 NA   NA
 270340 270341 SpyM3_1638 SpyM3_1639 thiD truA TRUE 0.907 -10.000 0.058 1.000 N NA
 270341 270342 SpyM3_1639 SpyM3_1640 truA comX.2 FALSE 0.084 187.000 0.000 1.000   NA
 270342 400265 SpyM3_1640 SpyM3_t60 comX.2 tRNA-Arg FALSE 0.330 92.000 0.000 NA   NA
 400265 400264 SpyM3_t60 SpyM3_t61 tRNA-Arg tRNA-Asn TRUE 0.414 80.000 0.000 NA   NA
 400264 2179449 SpyM3_t61 SpyM3_r18 tRNA-Asn   TRUE 0.839 6.000 0.000 NA   NA
 2179449 2179450 SpyM3_r18 SpyM3_r11     FALSE 0.388 82.000 0.000 NA   NA
 2179450 400263 SpyM3_r11 SpyM3_t62   tRNA-Ala FALSE 0.050 296.000 0.000 NA   NA
 400263 2179451 SpyM3_t62 SpyM3_r12 tRNA-Ala   TRUE 0.656 45.000 0.000 NA   NA
 2179451 270343 SpyM3_r12 SpyM3_1641     FALSE 0.031 388.000 0.000 NA   NA
 270344 270345 SpyM3_1642 SpyM3_1643 hsdR hsdS TRUE 0.982 13.000 0.000 0.001 Y NA
 270345 270346 SpyM3_1643 SpyM3_1644 hsdS hsdM TRUE 0.964 13.000 0.000 0.048 Y NA
 270347 270348 SpyM3_1645 SpyM3_1646 salR salK TRUE 0.997 -19.000 0.704 NA Y NA
 270348 270349 SpyM3_1646 SpyM3_1647 salK salY FALSE 0.113 181.000 0.000 NA   NA
 270349 270350 SpyM3_1647 SpyM3_1648 salY salX FALSE 0.082 190.000 0.000 1.000   NA
 270350 270351 SpyM3_1648 SpyM3_1649 salX salT TRUE 0.952 -3.000 0.000 1.000 Y NA
 270351 270352 SpyM3_1649 SpyM3_1650 salT   TRUE 0.922 15.000 0.000 0.049   NA
 270352 270353 SpyM3_1650 SpyM3_1651   salB TRUE 0.889 -22.000 0.000 1.000   NA
 270353 270354 SpyM3_1651 SpyM3_1652 salB salA FALSE 0.312 83.000 0.000 1.000   NA
 270354 270355 SpyM3_1652 SpyM3_1653 salA lacG FALSE 0.018 515.000 0.000 1.000   NA
 270355 270356 SpyM3_1653 SpyM3_1654 lacG lacE TRUE 0.661 73.000 0.000 1.000 Y NA
 270356 270357 SpyM3_1654 SpyM3_1655 lacE lacF TRUE 0.993 0.000 0.150 0.012 Y NA
 270357 270358 SpyM3_1655 SpyM3_1656 lacF lacD.2 TRUE 0.985 24.000 0.667 1.000 Y NA
 270358 270359 SpyM3_1656 SpyM3_1657 lacD.2 lacC.2 TRUE 0.986 4.000 0.000 0.002 Y NA
 270359 270360 SpyM3_1657 SpyM3_1658 lacC.2 lacB.2 TRUE 0.800 46.000 0.000 1.000 Y NA
 270360 270361 SpyM3_1658 SpyM3_1659 lacB.2 lacA.2 TRUE 0.966 35.000 0.000 0.002 Y NA
 270362 270363 SpyM3_1660 SpyM3_1661 lacR.2   FALSE 0.021 650.000 0.000 NA   NA
 270363 270364 SpyM3_1661 SpyM3_1662     TRUE 0.913 -10.000 0.000 NA   NA
 270365 270366 SpyM3_1663 SpyM3_1664 rpsI rplM TRUE 0.995 21.000 0.601 0.022 Y NA
 270366 270367 SpyM3_1664 SpyM3_1665 rplM   FALSE 0.034 218.000 0.000 1.000 N NA
 270367 270368 SpyM3_1665 SpyM3_1666     TRUE 0.939 -3.000 0.051 NA   NA
 270368 270369 SpyM3_1666 SpyM3_1667     FALSE 0.175 127.000 0.000 NA   NA
 270369 270370 SpyM3_1667 SpyM3_1668     TRUE 0.406 97.000 0.036 NA   NA
 270370 270371 SpyM3_1668 SpyM3_1669     TRUE 0.927 4.000 0.109 NA   NA
 270371 270372 SpyM3_1669 SpyM3_1670     TRUE 0.668 47.000 0.003 NA   NA
 270372 270373 SpyM3_1670 SpyM3_1671     FALSE 0.102 196.000 0.000 NA   NA
 270373 270374 SpyM3_1671 SpyM3_1672   cysS TRUE 0.954 -7.000 0.129 1.000   NA
 270374 270375 SpyM3_1672 SpyM3_1673 cysS   TRUE 0.752 28.000 0.002 NA   NA
 270375 270376 SpyM3_1673 SpyM3_1674   cysE FALSE 0.026 479.000 0.000 NA   NA
 270376 270377 SpyM3_1674 SpyM3_1675 cysE   TRUE 0.916 9.000 0.097 NA   NA
 270377 270378 SpyM3_1675 SpyM3_1676   pnp TRUE 0.928 -7.000 0.009 NA   NA
 270378 270379 SpyM3_1676 SpyM3_1677 pnp   FALSE 0.021 281.000 0.000 1.000 N NA
 270379 270380 SpyM3_1677 SpyM3_1678     TRUE 0.851 13.000 0.056 1.000   NA
 270380 270381 SpyM3_1678 SpyM3_1679     TRUE 0.974 27.000 0.241 0.020   NA
 270381 270382 SpyM3_1679 SpyM3_1680     TRUE 0.980 -7.000 0.048 0.012 N NA
 270382 270383 SpyM3_1680 SpyM3_1681   rpsO FALSE 0.015 352.000 0.000 1.000 N NA
 270383 270384 SpyM3_1681 SpyM3_1682 rpsO   FALSE 0.117 176.000 0.000 NA   NA
 270385 270386 SpyM3_1683 SpyM3_1684   def FALSE 0.282 101.000 0.000 NA   NA
 270387 270388 SpyM3_1685 SpyM3_1686     TRUE 0.552 131.000 0.414 1.000   NA
 270388 270389 SpyM3_1686 SpyM3_1687   polC FALSE 0.182 110.000 0.020 1.000 N NA
 270389 270390 SpyM3_1687 SpyM3_1688 polC proS FALSE 0.214 254.000 0.070 0.043 N NA
 270390 270391 SpyM3_1688 SpyM3_1689 proS eep FALSE 0.115 198.000 0.095 1.000 N NA
 270391 270392 SpyM3_1689 SpyM3_1690 eep cdsA TRUE 0.417 73.000 0.040 1.000 N NA
 270392 270393 SpyM3_1690 SpyM3_1691 cdsA uppS TRUE 0.946 13.000 0.113 1.000 Y NA
 270393 270394 SpyM3_1691 SpyM3_1692 uppS   FALSE 0.065 219.000 0.007 NA N NA
 270394 270395 SpyM3_1692 SpyM3_1693     FALSE 0.169 116.000 0.006 NA N NA
 270395 270396 SpyM3_1693 SpyM3_1694   pulA FALSE 0.089 142.000 0.000 NA N NA
 270396 270397 SpyM3_1694 SpyM3_1695 pulA dexB TRUE 0.616 198.000 0.049 0.006 Y NA
 270397 270398 SpyM3_1695 SpyM3_1696 dexB msmK TRUE 0.532 129.000 0.171 1.000 Y NA
 270398 270399 SpyM3_1696 SpyM3_1697 msmK lrp FALSE 0.049 298.000 0.071 1.000 N NA
 270401 270402 SpyM3_1699 SpyM3_1700   dtd TRUE 0.912 -9.000 0.000 NA   NA
 270402 270403 SpyM3_1700 SpyM3_1701 dtd relA TRUE 0.874 15.000 0.177 1.000 N NA
 270403 270404 SpyM3_1701 SpyM3_1702 relA sclA FALSE 0.034 309.000 0.000 1.000   NA
 270404 270405 SpyM3_1702 SpyM3_1703 sclA sclA FALSE 0.138 151.000 0.000 NA   NA
 270406 270407 SpyM3_1704 SpyM3_1705     TRUE 0.842 5.000 0.000 NA   NA
 270407 270408 SpyM3_1705 SpyM3_1706   nrdI.1 TRUE 0.697 35.000 0.000 NA   NA
 270409 270410 SpyM3_1707 SpyM3_1708 rgfB   TRUE 0.882 79.000 0.610 1.000   NA
 270410 270411 SpyM3_1708 SpyM3_1709     FALSE 0.035 362.000 0.000 NA   NA
 270411 270412 SpyM3_1709 SpyM3_1710   prmA TRUE 0.968 0.000 0.227 NA   NA
 270412 270413 SpyM3_1710 SpyM3_1711 prmA   TRUE 0.566 71.000 0.013 NA   NA
 270414 270415 SpyM3_1712 SpyM3_1713 pabP trpG TRUE 0.863 33.000 0.009 1.000 Y NA
 270415 270416 SpyM3_1713 SpyM3_1714 trpG   TRUE 0.654 33.000 0.035 1.000 N NA
 270416 400258 SpyM3_1714 SpyM3_t63   tRNA-Lys FALSE 0.053 286.000 0.000 NA   NA
 400258 270417 SpyM3_t63 SpyM3_1715 tRNA-Lys   FALSE 0.056 276.000 0.000 NA   NA
 270417 270418 SpyM3_1715 SpyM3_1716     TRUE 0.983 -39.000 0.000 0.005   NA
 270420 270421 SpyM3_1718 SpyM3_1719 dppA dppB TRUE 0.409 227.000 0.000 0.029 Y NA
 270421 270422 SpyM3_1719 SpyM3_1720 dppB dppC TRUE 0.999 -3.000 1.000 0.029 Y NA
 270422 270423 SpyM3_1720 SpyM3_1721 dppC dppD TRUE 0.977 12.000 0.333 1.000 Y NA
 270423 270424 SpyM3_1721 SpyM3_1722 dppD dppE TRUE 0.999 -16.000 0.750 0.018 Y NA
 270425 270426 SpyM3_1723 SpyM3_1724     FALSE 0.122 169.000 0.000 NA   NA
 270426 270427 SpyM3_1724 SpyM3_1725   lmb TRUE 0.986 13.000 0.800 NA   NA
 270427 270428 SpyM3_1725 SpyM3_1726 lmb scpA FALSE 0.047 263.000 0.000 1.000   NA
 270428 270429 SpyM3_1726 SpyM3_1727 scpA emm3 FALSE 0.149 370.000 0.000 0.006   NA
 270429 270430 SpyM3_1727 SpyM3_1728 emm3 mga FALSE 0.112 184.000 0.000 NA   NA
 270432 270433 SpyM3_1730 SpyM3_1731   isp.1 TRUE 0.948 78.000 1.000 NA   NA
 270433 270434 SpyM3_1731 SpyM3_1732 isp.1   TRUE 0.534 102.000 0.200 1.000   NA
 270434 270435 SpyM3_1732 SpyM3_1733     TRUE 0.993 -3.000 0.500 1.000 Y NA
 270435 270436 SpyM3_1733 SpyM3_1734     TRUE 0.571 94.000 0.267 1.000 N NA
 270436 270437 SpyM3_1734 SpyM3_1735     TRUE 0.982 13.000 0.467 1.000 Y NA
 270437 270438 SpyM3_1735 SpyM3_1736     TRUE 0.982 -13.000 0.385 NA N NA
 270438 270439 SpyM3_1736 SpyM3_1737     FALSE 0.144 423.000 0.333 NA   NA
 270439 270440 SpyM3_1737 SpyM3_1738     TRUE 0.735 27.000 0.000 NA   NA
 270442 270443 SpyM3_1740 SpyM3_1741 prtM.2   FALSE 0.019 480.000 0.000 1.000   NA
 270443 270444 SpyM3_1741 SpyM3_1742   speB TRUE 0.977 2.000 0.000 0.001   NA
 270444 270445 SpyM3_1742 SpyM3_1743 speB   FALSE 0.058 272.000 0.000 NA   NA
 270449 270450 SpyM3_1747 SpyM3_1748 gldA mipB TRUE 0.762 57.000 0.211 1.000 N NA
 270450 270451 SpyM3_1748 SpyM3_1749 mipB pflD TRUE 0.942 13.000 0.368 1.000 N NA
 270451 270452 SpyM3_1749 SpyM3_1750 pflD   FALSE 0.122 211.000 0.132 1.000 N NA
 270452 270453 SpyM3_1750 SpyM3_1751     TRUE 0.998 10.000 0.889 0.012 Y NA
 270453 270454 SpyM3_1751 SpyM3_1752     TRUE 0.997 28.000 0.889 0.012 Y NA
 270454 270455 SpyM3_1752 SpyM3_1753     FALSE 0.059 288.000 0.091 1.000 N NA
 270455 270456 SpyM3_1753 SpyM3_1754     TRUE 0.956 16.000 0.188 1.000 Y NA
 270457 270458 SpyM3_1755 SpyM3_1756     TRUE 0.697 35.000 0.000 NA   NA
 270459 270460 SpyM3_1757 SpyM3_1758   pbp2A FALSE 0.035 215.000 0.000 1.000 N NA
 270460 270461 SpyM3_1758 SpyM3_1759 pbp2A   FALSE 0.304 105.000 0.062 NA N NA
 270462 270463 SpyM3_1760 SpyM3_1761     TRUE 0.756 47.000 0.056 NA   NA
 270466 270467 SpyM3_1764 SpyM3_1765   groEL FALSE 0.052 251.000 0.000 1.000   NA
 270467 270468 SpyM3_1765 SpyM3_1766 groEL groES TRUE 0.980 36.000 0.160 0.006 Y NA
 270468 270469 SpyM3_1766 SpyM3_1767 groES clpC FALSE 0.290 178.000 0.036 1.000 Y NA
 270469 270470 SpyM3_1767 SpyM3_1768 clpC ctsR TRUE 0.947 0.000 0.188 NA N NA
 270470 270471 SpyM3_1768 SpyM3_1769 ctsR csp FALSE 0.271 196.000 0.013 NA Y NA
 270471 400262 SpyM3_1769 SpyM3_t64 csp tRNA-Cys FALSE 0.024 510.000 0.000 NA   NA
 270472 270473 SpyM3_1770 SpyM3_1771 ahpC nox.3 TRUE 0.982 21.000 0.551 1.000 Y NA
 270475 270476 SpyM3_1773 SpyM3_1774 hutU   TRUE 0.686 88.000 0.086 1.000 Y NA
 270476 270477 SpyM3_1774 SpyM3_1775     TRUE 0.956 11.000 0.143 1.000 Y NA
 270477 270478 SpyM3_1775 SpyM3_1776   fhs.2 TRUE 0.735 18.000 0.038 1.000 N NA
 270478 270479 SpyM3_1776 SpyM3_1777 fhs.2