MicrobesOnline Operon Predictions for Shigella flexneri 2a str. 2457T

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 362682 362683 S0001 S0002 thrL thrA FALSE 0.219 81.000 0.043 1.000   NA
 362683 362684 S0002 S0003 thrA thrB TRUE 0.988 2.000 0.133 1.000 Y NA
 362684 362685 S0003 S0004 thrB thrC TRUE 0.993 1.000 0.233 1.000 Y NA
 362685 362686 S0004 S0005 thrC   FALSE 0.039 223.000 0.003 NA   NA
 362687 2179031 S0006 S0007 yaaA yaaJ FALSE 0.204 70.000 0.000 NA   NA
 362688 362689 S0008 S0009 talB mog FALSE 0.170 115.000 0.042 1.000 N NA
 362690 362691 S0010 S0012 yaaH   FALSE 0.189 149.000 0.043 NA   NA
 362691 362693 S0012 S0013   yaaI TRUE 0.910 26.000 0.500 NA   NA
 362694 362695 S0014 S0015 dnaK dnaJ TRUE 0.916 89.000 0.236 0.004 Y NA
 2179032 362697 S0016 S0018 sokC nhaA FALSE 0.009 483.000 0.000 NA   NA
 362697 362698 S0018 S0019 nhaA nhaR TRUE 0.571 66.000 0.292 1.000 N NA
 362699 362700 S0020 S0021     TRUE 0.992 -81.000 0.000 NA Y NA
 362700 362701 S0021 S0022   rpsT FALSE 0.009 389.000 0.000 NA N NA
 362702 362703 S0023 S0024   ribF TRUE 0.779 8.000 0.019 NA   NA
 362703 362704 S0024 S0025 ribF ileS TRUE 0.678 43.000 0.254 1.000 N NA
 362704 362705 S0025 S0026 ileS lspA TRUE 0.858 0.000 0.045 1.000 N NA
 362705 362706 S0026 S0027 lspA slpA FALSE 0.352 87.000 0.154 1.000 N NA
 362706 362707 S0027 S0028 slpA lytB TRUE 0.989 2.000 0.626 1.000 N NA
 362707 362708 S0028 S0029 lytB yaaF FALSE 0.136 66.000 0.028 1.000 N NA
 362708 362709 S0029 S0030 yaaF dapB FALSE 0.068 167.000 0.003 1.000 N NA
 362709 362710 S0030 S0031 dapB carA FALSE 0.061 456.000 0.034 1.000 Y NA
 362710 362711 S0031 S0032 carA carB TRUE 0.991 18.000 0.345 0.001 Y NA
 362711 362712 S0032 S0033 carB caiF FALSE 0.043 262.000 0.000 NA   NA
 362713 362714 S0034 S0035 caiE caiD TRUE 0.938 -15.000 0.000 1.000   NA
 362714 362715 S0035 S0036 caiD caiC TRUE 0.992 1.000 0.000 0.023 Y NA
 362715 362716 S0036 S0037 caiC caiB TRUE 0.635 59.000 0.154 0.023 N NA
 362716 362717 S0037 S0038 caiB caiA TRUE 0.743 129.000 0.529 1.000 N NA
 362717 362718 S0038 S0039 caiA caiT TRUE 0.559 31.000 0.118 1.000 N NA
 362719 2179033 S0040 S0041 fixA fixB TRUE 0.665 15.000 0.000 NA   NA
 2179033 362720 S0041 S0042 fixB fixC FALSE 0.287 51.000 0.000 NA   NA
 362720 362721 S0042 S0043 fixC fixX TRUE 0.996 -3.000 0.167 0.055 Y NA
 362721 362722 S0043 S0044 fixX yaaU FALSE 0.199 59.000 0.000 1.000 N NA
 362722 362723 S0044 S0045 yaaU yabF FALSE 0.338 48.000 0.000 1.000   NA
 362723 362724 S0045 S0046 yabF kefC TRUE 0.993 -7.000 0.560 1.000   NA
 362724 362725 S0046 S0047 kefC folA FALSE 0.053 191.000 0.012 1.000 N NA
 362726 362727 S0048 S0049 apaH apaG TRUE 0.958 7.000 0.267 NA N NA
 362727 362728 S0049 S0050 apaG ksgA TRUE 0.867 3.000 0.078 NA N NA
 362728 362729 S0050 S0051 ksgA pdxA TRUE 0.965 -3.000 0.197 1.000 N NA
 362729 362730 S0051 S0052 pdxA surA TRUE 0.989 0.000 0.561 1.000 N NA
 362730 362731 S0052 S0053 surA imp TRUE 0.494 53.000 0.182 1.000 N NA
 362733 362734 S0055 S0056 yabO hepA TRUE 0.940 12.000 0.294 1.000 N NA
 362734 362735 S0056 S0057 hepA polB TRUE 0.663 165.000 0.098 1.000 Y NA
 362735 362736 S0057 S0058 polB araD FALSE 0.109 75.000 0.018 1.000 N NA
 362736 362737 S0058 S0059 araD araA FALSE 0.407 200.000 0.017 1.000 Y NA
 362737 362738 S0059 S0060 araA araB TRUE 0.882 11.000 0.138 1.000 N NA
 362739 362740 S0061 S0062 araC yabI FALSE 0.403 86.000 0.167 NA   NA
 362741 362742 S0063 S0064 yabJ yabK TRUE 0.996 -16.000 0.522 0.016 N NA
 362742 362743 S0064 S0065 yabK tbpA TRUE 0.997 -24.000 0.697 0.071 N NA
 362743 362744 S0065 S0066 tbpA yabN FALSE 0.331 164.000 0.010 0.071   NA
 362746 362747 S0068 S0069 leuD leuC TRUE 0.996 11.000 0.309 0.001 Y NA
 362747 362748 S0069 S0070 leuC leuB TRUE 0.997 3.000 0.275 0.002 Y NA
 362748 362749 S0070 S0071 leuB leuA TRUE 0.995 0.000 0.126 0.002 Y NA
 362749 362750 S0071 S0072 leuA leuL TRUE 0.486 93.000 0.010 0.002   NA
 362751 362752 S0073 S0074 leuO ilvI FALSE 0.021 318.000 0.000 1.000 N NA
 362752 362753 S0074 S0075 ilvI ilvH TRUE 0.998 3.000 0.371 0.002 Y NA
 362753 362754 S0075 S0076 ilvH fruL TRUE 0.717 13.000 0.000 NA   NA
 362754 362755 S0076 S0077 fruL fruR FALSE 0.202 82.000 0.000 NA   NA
 362755 362756 S0077 S0078 fruR   FALSE 0.152 123.000 0.000 NA N NA
 362756 362757 S0078 S0079     TRUE 0.992 -81.000 0.000 NA Y NA
 362757 362758 S0079 S0080   yabB FALSE 0.007 559.000 0.000 NA   NA
 362758 362759 S0080 S0081 yabB yabC TRUE 0.991 2.000 0.635 NA   NA
 362759 362760 S0081 S0082 yabC ftsL TRUE 0.971 -3.000 0.227 1.000 N NA
 362760 362761 S0082 S0083 ftsL ftsI TRUE 0.757 16.000 0.124 1.000 N NA
 362761 362762 S0083 S0084 ftsI murE TRUE 0.991 -13.000 0.059 1.000 Y NA
 362762 362763 S0084 S0085 murE murF TRUE 0.999 -3.000 0.569 0.002 Y NA
 362763 362764 S0085 S0086 murF mraY TRUE 0.998 -6.000 0.309 0.004 Y NA
 362764 362765 S0086 S0087 mraY murD TRUE 0.999 3.000 0.647 0.004 Y NA
 362765 362766 S0087 S0088 murD ftsW TRUE 0.990 0.000 0.297 0.003 N NA
 362766 362767 S0088 S0089 ftsW murG TRUE 0.992 -3.000 0.647 1.000 N NA
 362767 362768 S0089 S0090 murG murC TRUE 0.890 54.000 0.283 1.000 Y NA
 362768 362769 S0090 S0091 murC ddlB TRUE 0.997 -7.000 0.153 0.004 Y NA
 362769 362770 S0091 S0092 ddlB ftsQ TRUE 0.995 2.000 0.372 NA Y NA
 362770 362771 S0092 S0093 ftsQ ftsA TRUE 0.983 -3.000 0.389 NA N NA
 362771 362772 S0093 S0094 ftsA ftsZ TRUE 0.918 61.000 0.460 1.000 Y NA
 362772 362773 S0094 S0095 ftsZ lpxC FALSE 0.328 101.000 0.134 1.000 N NA
 362773 362774 S0095 S0096 lpxC yacA FALSE 0.071 231.000 0.000 1.000   NA
 362774 362775 S0096 S0097 yacA secA FALSE 0.288 62.000 0.065 1.000   NA
 362775 362776 S0097 S0098 secA mutT TRUE 0.419 60.000 0.168 1.000 N NA
 362777 362778 S0099 S0100   yacG TRUE 0.938 -49.000 0.000 NA   NA
 362778 362779 S0100 S0101 yacG yacF TRUE 0.972 10.000 0.356 NA   NA
 362779 362780 S0101 S0102 yacF yacE TRUE 0.933 0.000 0.110 NA   NA
 362782 362783 S0104 S0105   hofC TRUE 0.843 8.000 0.000 NA   NA
 362783 2179034 S0105 S0106 hofC hofB TRUE 0.923 -10.000 0.000 NA   NA
 2179034 362784 S0106 S0107 hofB ppdD TRUE 0.827 10.000 0.000 NA   NA
 362784 362785 S0107 S0108 ppdD nadC FALSE 0.032 203.000 0.015 NA N NA
 362786 362787 S0109 S0110 ampD ampE TRUE 0.995 -3.000 0.249 1.000 Y NA
 362789 362790 S0112 S0113 pdhR aceE TRUE 0.484 161.000 0.276 1.000 N NA
 362790 362791 S0113 S0114 aceE aceF TRUE 0.973 15.000 0.220 1.000 Y NA
 362791 362792 S0114 S0115 aceF lpdA TRUE 0.478 325.000 0.463 1.000 Y NA
 362793 362794 S0117 S0118 acnB yacL FALSE 0.173 175.000 0.068 NA   NA
 362795 362796 S0119 S0120 speD speE TRUE 0.960 16.000 0.162 1.000 Y NA
 362796 362797 S0120 S0121 speE yacC TRUE 0.662 106.000 0.354 NA   NA
 362802 362803 S0126 S0127 yadG yadH TRUE 0.999 -3.000 0.688 0.089 Y NA
 362803 362804 S0127 S0128 yadH yadI FALSE 0.153 105.000 0.037 1.000 N NA
 362804 362805 S0128 S0129 yadI yadE TRUE 0.837 64.000 0.222 1.000 Y NA
 362808 362809 S0132 S0133 panC panB TRUE 0.996 12.000 0.395 0.001 Y NA
 362809 2179036 S0133 S0135 panB yadC FALSE 0.219 113.000 0.000 NA   NA
 362810 362811 S0134 S0136     TRUE 0.992 -81.000 0.000 NA Y NA
 362812 362813 S0137 S0138 folK pcnB TRUE 0.972 -3.000 0.234 1.000 N NA
 362813 362814 S0138 S0139 pcnB yadB TRUE 0.871 39.000 0.131 1.000 Y NA
 362814 362815 S0139 S0140 yadB dksA TRUE 0.502 67.000 0.231 1.000 N NA
 362815 362816 S0140 S0141 dksA sfsA FALSE 0.274 178.000 0.151 NA   NA
 362816 362817 S0141 S0142 sfsA yadP TRUE 0.655 15.000 0.045 NA   NA
 362818 362819 S0143 S0144 hrpB mrcB FALSE 0.204 196.000 0.158 1.000 N NA
 362819 362820 S0144 S0145 mrcB fhuA FALSE 0.059 220.000 0.000 1.000 N NA
 362820 362821 S0145 S0146 fhuA fhuC TRUE 0.841 51.000 0.156 1.000 Y NA
 362821 362822 S0146 S0147 fhuC fhuD TRUE 0.982 0.000 0.031 1.000 Y NA
 362822 362823 S0147 S0148 fhuD fhuB TRUE 0.986 -3.000 0.000 1.000 Y NA
 362825 362826 S0150 S0151 yadQ yadR FALSE 0.166 82.000 0.031 NA   NA
 362827 362828 S0152 S0153 yadS yadT TRUE 0.689 38.000 0.213 NA   NA
 362828 362829 S0153 S0154 yadT pfs TRUE 0.926 -7.000 0.073 1.000 N NA
 362830 362831 S0155 S0156 dgt htrA FALSE 0.286 130.000 0.101 1.000 N NA
 362831 2179037 S0156 S0157 htrA yaeG FALSE 0.183 155.000 0.000 NA   NA
 362832 362833 S0158 S0159 yaeH dapD FALSE 0.022 314.000 0.035 NA   NA
 362833 362834 S0159 S0160 dapD glnD TRUE 0.520 31.000 0.097 1.000 N NA
 362834 362835 S0160 S0161 glnD map TRUE 0.535 62.000 0.243 1.000 N NA
 362836 362837 S0162 S0163 rpsB tsf TRUE 0.758 258.000 0.748 1.000 Y NA
 362837 362838 S0163 S0164 tsf pyrH TRUE 0.667 147.000 0.416 1.000 N NA
 362838 362839 S0164 S0165 pyrH frr FALSE 0.307 292.000 0.626 1.000 N NA
 362839 362840 S0165 S0166 frr yaeM FALSE 0.132 92.000 0.032 1.000 N NA
 362840 362841 S0166 S0167 yaeM yaeS TRUE 0.477 186.000 0.025 1.000 Y NA
 362841 362842 S0167 S0168 yaeS cdsA TRUE 0.988 13.000 0.400 1.000 Y NA
 362842 362843 S0168 S0169 cdsA yaeL TRUE 0.783 12.000 0.080 1.000 N NA
 362843 362844 S0169 S0170 yaeL yaeT TRUE 0.932 30.000 0.204 1.000 Y NA
 362844 362845 S0170 S0171 yaeT hlpA TRUE 0.890 122.000 0.354 1.000 Y NA
 362845 362846 S0171 S0172 hlpA lpxD TRUE 0.998 4.000 0.814 1.000 Y NA
 362846 362847 S0172 S0173 lpxD fabZ TRUE 0.826 105.000 0.796 1.000 N NA
 362847 362848 S0173 S0174 fabZ lpxA TRUE 0.992 4.000 0.850 1.000 N NA
 362848 362849 S0174 S0175 lpxA lpxB TRUE 0.995 0.000 0.289 1.000 Y NA
 362849 362850 S0175 S0176 lpxB rnhB TRUE 0.963 -3.000 0.186 1.000 N NA
 362850 362851 S0176 S0177 rnhB dnaE TRUE 0.864 37.000 0.104 1.000 Y NA
 362851 362852 S0177 S0178 dnaE accA TRUE 0.811 13.000 0.122 1.000 N NA
 362852 362853 S0178 S0179 accA ldcC FALSE 0.100 99.000 0.010 1.000 N NA
 362853 362854 S0179 S0180 ldcC yaeR TRUE 0.708 57.000 0.039 1.000 Y NA
 362854 362855 S0180 S0181 yaeR mesJ FALSE 0.111 65.000 0.015 1.000 N NA
 362857 362858 S0183 S0184 yaeQ yaeJ TRUE 0.879 -3.000 0.034 NA   NA
 362858 362859 S0184 S0185 yaeJ cutF TRUE 0.622 14.000 0.027 NA   NA
 362860 362861 S0186 S0187 yaeF proS FALSE 0.167 53.000 0.002 NA   NA
 362861 362862 S0187 S0188 proS yaeB FALSE 0.219 111.000 0.048 NA   NA
 362862 362863 S0188 S0189 yaeB rcsF TRUE 0.975 -3.000 0.247 NA   NA
 362863 362864 S0189 S0190 rcsF yaeC TRUE 0.744 118.000 0.500 NA   NA
 362864 362865 S0190 S0191 yaeC yaeE TRUE 0.972 40.000 0.411 0.056 Y NA
 362865 362866 S0191 S0192 yaeE abc TRUE 0.998 -7.000 0.584 1.000 Y NA
 362867 408049 S0193 S0194 yaeD rrsH FALSE 0.017 364.000 0.000 NA   NA
 408049 400109 S0194 S0195 rrsH ileV FALSE 0.205 69.000 0.000 NA   NA
 400109 400110 S0195 S0196 ileV alaV FALSE 0.333 43.000 0.000 NA   NA
 400110 2179038 S0196 S0197 alaV rrlH FALSE 0.122 184.000 0.000 NA   NA
 2179038 406627 S0197 S0198 rrlH rrfH FALSE 0.201 95.000 0.000 NA   NA
 406627 400111 S0198 S0199 rrfH aspU FALSE 0.270 53.000 0.000 NA   NA
 400111 362868 S0199 S0200 aspU yafB FALSE 0.168 163.000 0.000 NA   NA
 362869 362870 S0201 S0202   yafC FALSE 0.174 68.000 0.000 1.000 N NA
 362871 362872 S0203 S0204 yafD yafE FALSE 0.079 228.000 0.066 NA   NA
 362873 362874 S0205 S0206 dniR gloB TRUE 0.542 72.000 0.233 1.000   NA
 362877 400112 S0209 S0210 dnaQ aspV FALSE 0.217 133.000 0.000 NA   NA
 362878 362879 S0211 S0212 safA   TRUE 0.796 11.000 0.000 NA   NA
 362879 362880 S0212 S0213   safB FALSE 0.209 144.000 0.000 NA   NA
 362880 362881 S0213 S0214 safB safC TRUE 0.899 -3.000 0.000 NA   NA
 362881 362882 S0214 S0215 safC   TRUE 0.977 16.000 1.000 NA   NA
 362882 362883 S0215 S0217   sat1 FALSE 0.223 195.000 0.154 NA   NA
 362883 362884 S0217 S0218 sat1 sat2 TRUE 0.969 -13.000 0.154 NA   NA
 362884 362885 S0218 S0219 sat2   FALSE 0.056 238.000 0.000 NA   NA
 362886 362887 S0220 S0221     TRUE 0.991 -42.000 0.000 1.000 Y NA
 362887 362888 S0221 S0223     FALSE 0.080 422.000 0.000 1.000 Y NA
 362888 362889 S0223 S0224     TRUE 0.877 27.000 0.000 1.000 Y NA
 362891 362892 S0229 S0230     FALSE 0.024 321.000 0.000 NA   NA
 362892 362893 S0230 S0231     TRUE 0.856 5.000 0.000 NA   NA
 362895 362897 S0233 S0234     TRUE 0.899 -3.000 0.000 NA   NA
 362897 362896 S0234 S0235     TRUE 0.997 -839.000 0.000 0.044 Y NA
 362898 362899 S0236 S0237     TRUE 0.932 -31.000 0.000 NA   NA
 362899 362900 S0237 S0238     TRUE 0.879 1.000 0.000 NA   NA
 362900 362901 S0238 S0239     TRUE 0.921 14.000 0.286 NA   NA
 362901 362902 S0239 S0240     TRUE 0.953 0.000 0.161 NA   NA
 362902 362903 S0240 S0241     FALSE 0.320 45.000 0.000 NA   NA
 362903 362904 S0241 S0242     TRUE 0.930 -22.000 0.000 NA   NA
 362904 362905 S0242 S0243     TRUE 0.988 0.000 0.500 NA   NA
 362905 362906 S0243 S0244     TRUE 0.976 0.000 0.286 NA   NA
 362906 362907 S0244 S0245     TRUE 0.993 0.000 0.750 NA   NA
 362907 362908 S0245 S0246     TRUE 0.989 3.000 0.600 NA   NA
 362908 362909 S0246 S0247     TRUE 0.969 10.000 0.333 NA   NA
 362909 362910 S0247 S0248     TRUE 0.951 1.000 0.167 NA   NA
 362910 362911 S0248 S0249     FALSE 0.215 126.000 0.000 NA   NA
 362911 362912 S0249 S0250     FALSE 0.069 235.000 0.000 1.000   NA
 362913 362914 S0251 S0252 psiF phoA FALSE 0.172 101.000 0.032 NA   NA
 362914 362915 S0252 S0253 phoA yaiB FALSE 0.372 32.000 0.032 NA   NA
 362919 362920 S0257 S0258 yaiW sbmA TRUE 0.749 13.000 0.000 1.000   NA
 2179039 2179040 S0260 S0261 yaiV yaiU FALSE 0.333 43.000 0.000 NA   NA
 2179040 362922 S0261 S0262 yaiU   TRUE 0.571 20.000 0.000 NA   NA
 362922 362923 S0262 S0263     FALSE 0.389 274.000 0.000 0.043 Y NA
 362923 362924 S0263 S0264   is600a TRUE 0.806 141.000 0.182 1.000 Y NA
 362924 2179041 S0264 S0268 is600a yaiT FALSE 0.061 233.000 0.000 NA   NA
 2179041 362925 S0268 S0266 yaiT yi22_6 TRUE 0.953 -1449.000 0.000 NA   NA
 362925 362926 S0266 S0267 yi22_6 yi21_6 TRUE 0.991 -42.000 0.000 1.000 Y NA
 362927 362928 S0269 S0270   hemB FALSE 0.218 137.000 0.000 NA   NA
 362929 362930 S0271 S0272 tauD tauC TRUE 0.968 -3.000 0.214 1.000 N NA
 362930 362931 S0272 S0273 tauC tauB TRUE 0.998 -3.000 0.728 1.000 Y NA
 362931 362932 S0273 S0274 tauB tauA TRUE 0.951 13.000 0.047 1.000 Y NA
 362932 362933 S0274 S0275 tauA   FALSE 0.005 558.000 0.000 1.000 N NA
 362933 362934 S0275 S0276     TRUE 0.992 -81.000 0.000 NA Y NA
 362935 362936 S0277 S0278 ykgH   FALSE 0.202 76.000 0.000 NA   NA
 362937 362938 S0279 S0280 ykgG ykgF TRUE 0.995 -7.000 0.286 0.001   NA
 362938 362939 S0280 S0281 ykgF ykgE TRUE 0.988 11.000 0.286 NA Y NA
 362940 362941 S0282 S0283     TRUE 0.992 -81.000 0.000 NA Y NA
 362941 362942 S0283 S0284   rhsG FALSE 0.004 1078.000 0.000 NA   NA
 362942 362943 S0284 S0285 rhsG   TRUE 0.642 23.000 0.095 NA   NA
 362943 362944 S0285 S0286     FALSE 0.248 57.000 0.000 NA   NA
 362944 362945 S0286 S0287     TRUE 0.655 22.000 0.095 NA   NA
 362945 362946 S0287 S0288   rhsD TRUE 0.899 -3.000 0.000 NA   NA
 362946 362947 S0288 S0289 rhsD rhs-like TRUE 0.899 -3.000 0.000 NA   NA
 362951 362952 S0293 S0294 gmhA yafJ FALSE 0.307 206.000 0.229 1.000   NA
 362954 362955 S0296 S0297 yafL yafM FALSE 0.096 176.000 0.000 NA N NA
 362957 362958 S0298 S0300 mbhA dinP FALSE 0.171 71.000 0.000 1.000 N NA
 362958 362959 S0300 S0301 dinP yafN FALSE 0.202 52.000 0.000 NA N NA
 362959 362960 S0301 S0302 yafN yafO TRUE 0.986 3.000 0.500 NA   NA
 362960 362961 S0302 S0303 yafO yafP TRUE 0.827 10.000 0.000 NA   NA
 362961 362962 S0303 S0304 yafP   FALSE 0.051 246.000 0.000 NA   NA
 362962 362963 S0304 S0305   prfH TRUE 0.612 116.000 0.303 NA   NA
 362965 362966 S0307 S0308 gpt yafA FALSE 0.181 92.000 0.040 NA   NA
 362966 362967 S0308 S0309 yafA crl FALSE 0.241 58.000 0.048 NA   NA
 362969 362970 S0311 S0312     TRUE 0.992 -81.000 0.000 NA Y NA
 362970 362971 S0312 S0313   proB FALSE 0.092 191.000 0.000 1.000 N NA
 362971 362972 S0313 S0314 proB proA TRUE 0.983 12.000 0.026 0.001 Y NA
 362972 400113 S0314 S0315 proA thrW FALSE 0.217 115.000 0.000 NA   NA
 362974 362975 S0317 S0318     TRUE 0.806 141.000 0.182 1.000 Y NA
 362975 362976 S0318 S0319     FALSE 0.270 53.000 0.000 NA   NA
 362976 362977 S0319 S4801     TRUE 0.951 -91.000 0.000 NA   NA
 362980 362981 S4803 S0320 gtrII gtrBI TRUE 0.899 -3.000 0.000 NA   NA
 362981 362982 S0320 S0321 gtrBI gtrAI TRUE 0.899 -3.000 0.000 NA   NA
 362982 362983 S0321 S0322 gtrAI   FALSE 0.050 262.000 0.000 1.000   NA
 362983 362984 S0322 S0323     TRUE 0.501 109.000 0.000 0.043   NA
 362984 362985 S0323 S0324     TRUE 0.806 141.000 0.182 1.000 Y NA
 362986 362987 S0325 S4804     FALSE 0.016 349.000 0.000 1.000 N NA
 362988 362989 S0326 S0327     FALSE 0.016 741.000 0.000 0.043   NA
 362989 362990 S0327 S0328     FALSE 0.021 362.000 0.000 1.000   NA
 362993 362994 S0331 S0332 yaiI aroL FALSE 0.076 183.000 0.007 NA   NA
 362994 362995 S0332 S0333 aroL yaiA FALSE 0.284 50.000 0.044 NA   NA
 362995 362996 S0333 S0334 yaiA aroM FALSE 0.045 258.000 0.000 NA   NA
 362996 362997 S0334 S0335 aroM yaiE FALSE 0.204 72.000 0.049 NA   NA
 362997 362998 S0335 S0336 yaiE   FALSE 0.085 209.000 0.000 NA   NA
 362998 362999 S0336 S0337     TRUE 0.899 -3.000 0.000 NA   NA
 363002 363003 S0341 S0342 araJ sbcC FALSE 0.141 126.000 0.030 1.000 N NA
 363003 363004 S0342 S0343 sbcC sbcD TRUE 0.994 -3.000 0.021 0.001 Y NA
 363005 363006 S0344 S0345 phoB phoR TRUE 0.960 58.000 0.453 0.013 Y NA
 363006 363007 S0345 S0346 phoR brnQ FALSE 0.010 407.000 0.000 1.000 N NA
 363007 363008 S0346 S0347 brnQ proY TRUE 0.925 76.000 0.348 0.085 Y NA
 363008 363009 S0347 S0348 proY malZ FALSE 0.274 156.000 0.123 1.000 N NA
 363010 363011 S0350 S0351 queA tgt TRUE 0.963 55.000 0.360 0.001 Y NA
 363011 363012 S0351 S0352 tgt yajC TRUE 0.855 23.000 0.325 NA N NA
 363012 363013 S0352 S0353 yajC secD TRUE 0.861 28.000 0.045 NA Y NA
 363013 363014 S0353 S0354 secD secF TRUE 0.994 11.000 0.206 0.001 Y NA
 363014 363015 S0354 S0355 secF yajD FALSE 0.177 129.000 0.015 1.000   NA
 363016 363017 S0356 S0357 tsx yajI FALSE 0.030 298.000 0.000 NA   NA
 363018 363019 S0358 S0359 ybaD ribD TRUE 0.963 4.000 0.277 NA N NA
 363019 363020 S0359 S0360 ribD ribH TRUE 0.821 89.000 0.034 0.002 Y NA
 363020 363021 S0360 S0361 ribH nusB TRUE 0.894 20.000 0.347 1.000 N NA
 363021 363022 S0361 S0362 nusB thiL TRUE 0.481 78.000 0.225 1.000 N NA
 363022 363023 S0362 S0363 thiL pgpA TRUE 0.977 -22.000 0.206 1.000 N NA
 2179043 363024 S0364 S0365 yajO dxs FALSE 0.257 55.000 0.000 NA   NA
 363024 363025 S0365 S0366 dxs ispA TRUE 0.894 25.000 0.060 1.000 Y NA
 363025 363026 S0366 S0367 ispA xseB TRUE 0.834 0.000 0.035 1.000 N NA
 363028 363029 S0369 S0370 thiJ apbA TRUE 0.974 -43.000 0.155 NA   NA
 363031 363032 S4809 S4810     TRUE 0.607 53.000 0.000 0.009   NA
 363033 363034 S0372 S4811     TRUE 0.664 128.000 0.000 NA Y NA
 363035 363036 S4812 S0373     FALSE 0.031 294.000 0.000 NA   NA
 363036 363037 S0373 S0374   cyoE FALSE 0.141 184.000 0.000 1.000   NA
 363037 363038 S0374 S0375 cyoE cyoD TRUE 0.883 15.000 0.118 0.085 N NA
 363038 363039 S0375 S0376 cyoD cyoC TRUE 0.998 0.000 0.485 0.053 Y NA
 363039 2179044 S0376 S0377 cyoC cyoB TRUE 0.923 -10.000 0.000 NA   NA
 2179044 2179045 S0377 S0378 cyoB cyoA TRUE 0.542 22.000 0.000 NA   NA
 2179045 363040 S0378 S0379 cyoA   FALSE 0.220 63.000 0.000 NA   NA
 363040 363041 S0379 S0380     FALSE 0.075 216.000 0.000 NA   NA
 363041 363042 S0380 S0381     TRUE 0.899 -3.000 0.000 NA   NA
 363042 363043 S0381 S0382     TRUE 0.571 20.000 0.000 NA   NA
 363043 363044 S0382 S0383     TRUE 0.985 -3.000 0.000 NA Y NA
 363044 363045 S0383 S0384   ampG FALSE 0.008 547.000 0.000 1.000   NA
 363045 363046 S0384 S0385 ampG yajG TRUE 0.694 44.000 0.256 NA   NA
 363047 363048 S0386 S0387 bolA tig FALSE 0.013 344.000 0.000 NA N NA
 363048 363049 S0387 S0388 tig clpP TRUE 0.609 247.000 0.351 1.000 Y NA
 363049 363050 S0388 S0389 clpP clpX TRUE 0.889 126.000 0.352 1.000 Y NA
 363050 363051 S0389 S0390 clpX lon TRUE 0.789 188.000 0.201 0.086 Y NA
 363051 363052 S0390 S0391 lon hupB FALSE 0.057 209.000 0.000 NA N NA
 363052 363053 S0391 S0392 hupB ybaU FALSE 0.075 192.000 0.000 NA N NA
 363053 363054 S0392 S0393 ybaU ybaV FALSE 0.130 151.000 0.033 1.000 N NA
 363054 363055 S0393 S0394 ybaV ybaW FALSE 0.184 94.000 0.027 1.000   NA
 363056 2179046 S0395 S0396 ybaX ybaE FALSE 0.213 65.000 0.000 NA   NA
 363057 363058 S0397 S0398 cof ybaO FALSE 0.180 67.000 0.020 1.000   NA
 363058 363059 S0398 S0399 ybaO mdlA TRUE 0.677 30.000 0.179 1.000 N NA
 363059 363060 S0399 S0400 mdlA mdlB TRUE 1.000 -7.000 0.911 0.005 Y NA
 363060 363061 S0400 S0401 mdlB glnK FALSE 0.079 181.000 0.028 1.000 N NA
 363061 363062 S0401 S0402 glnK amtB TRUE 0.642 30.000 0.156 1.000 N NA
 363064 363065 S0404 S0405 ybaY   FALSE 0.219 111.000 0.000 NA   NA
 2179047 363067 S0407 S0408 ffs ybaA FALSE 0.219 111.000 0.000 NA   NA
 363068 363069 S0409 S0410 ylaB ylaC FALSE 0.166 164.000 0.000 NA   NA
 363069 2179048 S0410 S0411 ylaC ylaD FALSE 0.216 116.000 0.000 NA   NA
 2179048 363070 S0411 S0412 ylaD hha FALSE 0.147 172.000 0.000 NA   NA
 363070 363071 S0412 S0413 hha ybaJ TRUE 0.569 26.000 0.080 NA   NA
 363071 363072 S0413 S0414 ybaJ acrB FALSE 0.007 546.000 0.000 NA   NA
 363072 363073 S0414 S0415 acrB acrA TRUE 0.907 23.000 0.458 1.000 N NA
 363074 363075 S0416 S0417 acrR aefA FALSE 0.182 128.000 0.000 1.000 N NA
 363076 363077 S0418 S0419 ybaM priC TRUE 0.956 14.000 0.474 NA   NA
 363078 363079 S0420 S0421 ybaN apt FALSE 0.176 153.000 0.043 NA   NA
 363079 363080 S0421 S0422 apt dnaX FALSE 0.260 129.000 0.088 1.000 N NA
 363080 363081 S0422 S0423 dnaX ybaB TRUE 0.757 53.000 0.411 NA   NA
 363081 363082 S0423 S0424 ybaB recR TRUE 0.991 0.000 0.604 NA   NA
 363082 363083 S0424 S0425 recR htpG FALSE 0.141 110.000 0.028 1.000 N NA
 363083 363084 S0425 S0426 htpG adk FALSE 0.241 181.000 0.035 0.086 N NA
 363084 363085 S0426 S0427 adk hemH FALSE 0.111 132.000 0.013 1.000 N NA
 363088 363089 S0430 S0431 ybaL fsr FALSE 0.125 238.000 0.000 0.084 N NA
 363091 363092 S0433 S0434 ybaK ybaP FALSE 0.064 204.000 0.022 NA   NA
 363095 363096 S0437 S0438 ybaS ybaT TRUE 0.979 3.000 0.028 1.000 Y NA
 363096 363097 S0438 S0439 ybaT ybbI FALSE 0.181 125.000 0.000 1.000 N NA
 363098 363099 S0440 S0441 ybbJ ybbK TRUE 0.995 0.000 0.313 NA Y NA
 363100 363101 S0442 S0443 ybbL ybbM TRUE 0.967 -40.000 0.127 NA   NA
 363102 363103 S0444 S0445 ybbN ybbO TRUE 0.684 25.000 0.118 1.000   NA
 363103 2179049 S0445 S0446 ybbO tesA TRUE 0.923 -10.000 0.000 NA   NA
 363104 2179050 S0447 S0448 ybbA ybbP TRUE 0.899 -3.000 0.000 NA   NA
 363105 363106 S0449 S0450 ybbB ybbS FALSE 0.135 69.000 0.012 NA   NA
 363107 363108 S0451 S0452 ybbT ybbU TRUE 0.769 78.000 0.625 1.000 N NA
 363108 363109 S0452 S0453 ybbU gcl FALSE 0.239 90.000 0.054 1.000   NA
 363109 363110 S0453 S0454 gcl gip TRUE 0.680 13.000 0.022 1.000   NA
 363111 363112 S0455 S0456     TRUE 0.992 -81.000 0.000 NA Y NA
 363112 363113 S0456 S0457   ylbA TRUE 0.456 29.000 0.000 NA   NA
 363113 363114 S0457 S0458 ylbA ylbB TRUE 0.819 11.000 0.059 NA   NA
 2179051 363115 S0459 S0460 ylbF arcC TRUE 0.899 -3.000 0.000 NA   NA
 363116 363117 S0461 S0462 purK purE TRUE 0.996 -3.000 0.136 0.001 Y NA
 363117 363118 S0462 S0463 purE ybbF FALSE 0.178 118.000 0.016 1.000   NA
 363118 363119 S0463 S0464 ybbF ppiB TRUE 0.970 3.000 0.237 1.000   NA
 363121 363122 S0466 S0467 ybcI ybcJ FALSE 0.142 108.000 0.011 NA   NA
 363122 363123 S0467 S0468 ybcJ folD TRUE 0.901 2.000 0.055 1.000   NA
 363124 363125 S0469 S0470 sfmA sfmC FALSE 0.376 220.000 0.000 1.000 Y NA
 363126 363127 S0471 S0472     TRUE 0.992 -81.000 0.000 NA Y NA
 363127 2179052 S0472 S0473   fimZ FALSE 0.279 52.000 0.000 NA   NA
 363128 363129 S0475 S0476 envY ybcH FALSE 0.126 183.000 0.000 NA   NA
 363129 2179053 S0476 S0477 ybcH nfrA TRUE 0.879 1.000 0.000 NA   NA
 2179053 2179054 S0477 S0478 nfrA nfrB TRUE 0.927 -13.000 0.000 NA   NA
 2179054 363130 S0478 S0479 nfrB ybcZ FALSE 0.195 150.000 0.000 NA   NA
 363130 363131 S0479 S0480 ybcZ ylcA TRUE 0.999 -10.000 0.600 0.001 Y NA
 363132 363133 S0481 S0482 ylcB ylcC TRUE 0.919 24.000 0.500 NA   NA
 363133 2179055 S0482 S0483 ylcC ylcD TRUE 0.642 16.000 0.000 NA   NA
 2179055 363134 S0483 S0484 ylcD   TRUE 0.953 -1248.000 0.000 NA   NA
 363135 363136 S0485 S0486     FALSE 0.254 263.000 0.000 1.000 Y NA
 363136 363137 S0486 S0487     FALSE 0.028 1141.000 0.000 1.000 Y NA
 363137 363138 S0487 S0488     TRUE 0.665 72.000 0.000 1.000 Y NA
 363139 363140 S0490 S0491 ybdE pheP FALSE 0.390 101.000 0.000 0.084 N NA
 363141 363142 S0492 S0493 ybdG nfnB FALSE 0.184 108.000 0.000 1.000 N NA
 363142 363143 S0493 S0494 nfnB ybdF FALSE 0.199 94.000 0.000 NA   NA
 363143 363144 S0494 S0495 ybdF ybdJ FALSE 0.213 65.000 0.000 NA   NA
 363144 363145 S0495 S0496 ybdJ ybdK FALSE 0.211 66.000 0.000 NA   NA
 363146 363147 S0497 S0498 IS103   TRUE 0.899 -3.000 0.000 NA   NA
 363147 363148 S0498 S0499     FALSE 0.007 517.000 0.000 NA   NA
 363148 363149 S0499 S0500     FALSE 0.129 252.000 0.000 0.096   NA
 363150 363151 S0501 S0502 entD fepA TRUE 0.747 166.000 0.700 1.000 N NA
 363152 363153 S0503 S0504 fes entF FALSE 0.077 218.000 0.083 NA N NA
 363153 363154 S0504 S0505 entF   FALSE 0.142 84.000 0.000 NA N NA
 363154 363155 S0505 S0506     TRUE 0.992 -81.000 0.000 NA Y NA
 363155 2179056 S0506 S0507   fepE FALSE 0.082 211.000 0.000 NA   NA
 363156 363157 S0508 S0509 fepC fepG TRUE 0.985 -3.000 0.038 1.000 Y NA
 363157 363158 S0509 S0510 fepG fepD TRUE 0.993 -3.000 0.000 0.054 Y NA
 2179057 363161 S0513 S0514 entC entE TRUE 0.827 10.000 0.000 NA   NA
 363161 363162 S0514 S0515 entE entB TRUE 0.992 14.000 0.667 1.000 Y NA
 363162 363163 S0515 S0516 entB entA TRUE 0.981 0.000 0.024 1.000 Y NA
 363163 363164 S0516 S0517 entA ybdB TRUE 0.981 3.000 0.065 NA Y NA
 363164 363165 S0517 S0518 ybdB cstA FALSE 0.328 181.000 0.222 NA N NA
 2179058 363168 S0524 S0522 ybdM   TRUE 0.953 -1145.000 0.000 NA   NA
 363168 363169 S0522 S0523     FALSE 0.307 240.000 0.000 1.000 Y NA
 363169 2179059 S0523 S0525   ybdN FALSE 0.005 734.000 0.000 NA   NA
 363170 363171 S0526 S0527     TRUE 0.720 57.000 0.000 1.000 Y NA
 363173 363174 S0529 S0530 ahpC ahpF TRUE 0.797 215.000 0.551 1.000 Y NA
 363176 363177 S0532 S0533 ybdR   FALSE 0.202 81.000 0.000 NA   NA
 363178 363179 S0534 S0535 rnk rna FALSE 0.032 229.000 0.018 1.000 N NA
 363179 2179060 S0535 S0536 rna ybdS FALSE 0.202 96.000 0.000 NA   NA
 2179060 363180 S0536 S0537 ybdS citG FALSE 0.287 51.000 0.000 NA   NA
 363180 363181 S0537 S0538 citG ybdU TRUE 0.953 37.000 0.400 1.000 Y NA
 363181 363182 S0538 S0539 ybdU citF TRUE 0.835 4.000 0.000 1.000 N NA
 363182 363183 S0539 S0540 citF citE TRUE 0.944 11.000 0.000 0.001 N NA
 363183 363184 S0540 S0541 citE citD TRUE 0.996 -3.000 0.537 0.001 N NA
 363184 363185 S0541 S0542 citD citC TRUE 0.939 15.000 0.000 1.000 Y NA
 363185 363186 S0542 S0543 citC   FALSE 0.012 380.000 0.000 1.000 N NA
 363186 363187 S0543 S0545     TRUE 0.992 -81.000 0.000 NA Y NA
 363189 363190 S0547 S0548 modC modB TRUE 0.999 3.000 0.537 0.001 Y NA
 363190 363191 S0548 S0549 modB modA TRUE 0.999 0.000 0.627 0.001 Y NA
 363191 363192 S0549 S0550 modA   FALSE 0.197 167.000 0.072 NA   NA
 363193 363194 S0551 S0552 modE modF FALSE 0.374 68.000 0.009 0.085   NA
 363194 363195 S0552 S0553 modF galE FALSE 0.038 261.000 0.023 1.000   NA
 363195 363196 S0553 S0554 galE galT TRUE 0.955 10.000 0.053 0.001 N NA
 363196 363197 S0554 S0555 galT galK TRUE 0.992 4.000 0.370 0.001 N NA
 363197 363198 S0555 S0556 galK galM TRUE 0.996 -6.000 0.083 0.001 Y NA
 363198 363199 S0556 S0557 galM gpmA FALSE 0.390 203.000 0.009 1.000 Y NA
 363201 363202 S0559 S0560   ybgR FALSE 0.271 114.000 0.057 1.000   NA
 363203 363204 S0561 S0562 pnuC nadA TRUE 0.799 38.000 0.023 1.000 Y NA
 363204 400208 S0562 S0563 nadA lysY FALSE 0.050 249.000 0.000 NA   NA
 400208 400207 S0563 S0564 lysY valZ TRUE 0.862 4.000 0.000 NA   NA
 400207 400206 S0564 S0565 valZ lysW FALSE 0.279 52.000 0.000 NA   NA
 400206 400205 S0565 S0566 lysW valT TRUE 0.870 3.000 0.000 NA   NA
 400205 400204 S0566 S0567 valT lysT FALSE 0.218 136.000 0.000 NA   NA
 400204 363205 S0567 S0568 lysT ybgF FALSE 0.163 165.000 0.000 NA   NA
 363205 363206 S0568 S0569 ybgF pal TRUE 0.892 10.000 0.088 1.000   NA
 363206 363207 S0569 S0570 pal tolB TRUE 0.889 35.000 0.592 1.000 N NA
 363207 363208 S0570 S0571 tolB tolA FALSE 0.159 133.000 0.051 NA N NA
 363208 363209 S0571 S0572 tolA tolR FALSE 0.272 65.000 0.114 NA N NA
 363209 363210 S0572 S0573 tolR tolQ TRUE 0.998 4.000 0.556 0.068 Y NA
 363210 363211 S0573 S0574 tolQ ybgC TRUE 0.992 -3.000 0.593 1.000   NA
 363211 363212 S0574 S0575 ybgC ybgE FALSE 0.280 150.000 0.095 NA   NA
 363212 363213 S0575 S0576 ybgE cydB FALSE 0.315 128.000 0.100 NA   NA
 363213 363214 S0576 S0577 cydB cydA TRUE 0.965 16.000 0.000 0.052 Y NA
 363214 363215 S0577 S0578 cydA ybgG FALSE 0.003 845.000 0.000 1.000 N NA
 363215 363216 S0578 S0579 ybgG hrsA TRUE 0.917 18.000 0.036 1.000 Y NA
 363218 363219 S0581 S0582 sucD sucC TRUE 0.999 0.000 0.806 0.001 Y NA
 363219 363220 S0582 S0583 sucC sucB TRUE 0.748 94.000 0.136 1.000 Y NA
 363220 363221 S0583 S0584 sucB sucA TRUE 0.992 15.000 0.667 1.000 Y NA
 363221 363222 S0584 S0585 sucA   TRUE 0.929 -18.000 0.000 NA   NA
 363222 363223 S0585 S0586   sdhB FALSE 0.235 59.000 0.000 NA   NA
 363223 363224 S0586 S0587 sdhB sdhA TRUE 0.995 16.000 0.604 0.003 Y NA
 363224 363225 S0587 S0588 sdhA sdhD TRUE 0.999 0.000 0.705 0.003 Y NA
 363225 363226 S0588 S0589 sdhD sdhC TRUE 0.999 -6.000 0.453 0.001 Y NA
 363227 363228 S0590 S0591 gltA ybgD FALSE 0.011 391.000 0.000 1.000 N NA
 363228 363229 S0591 S0592 ybgD ybgQ TRUE 0.758 51.000 0.000 1.000 Y NA
 363229 363230 S0592 S0593 ybgQ ybgP TRUE 0.939 15.000 0.000 1.000 Y NA
 363230 2179061 S0593 S0594 ybgP ybgO TRUE 0.933 -33.000 0.000 NA   NA
 2179061 363231 S0594 S0595 ybgO abrB FALSE 0.216 107.000 0.000 NA   NA
 363232 363233 S0596 S0597 nei ybgL FALSE 0.395 36.000 0.037 1.000   NA
 363233 2179062 S0597 S0598 ybgL ybgK TRUE 0.923 -10.000 0.000 NA   NA
 2179062 363234 S0598 S0599 ybgK ybgJ TRUE 0.915 -6.000 0.000 NA   NA
 363234 363235 S0599 S0600 ybgJ ybgI TRUE 0.534 23.000 0.050 NA   NA
 363237 363238 S0602 S0603 phrB ybgA TRUE 0.856 -3.000 0.019 NA   NA
 363240 363241 S0605 S0606 rhsE   FALSE 0.006 616.000 0.000 NA   NA
 363241 363242 S0606 S0607     TRUE 0.945 -81.000 0.000 NA   NA
 363242 363243 S0607 S0608   ybfA FALSE 0.008 486.000 0.000 NA   NA
 363244 2179063 S0609 S0610 kdpA kdpB TRUE 0.527 23.000 0.000 NA   NA
 2179063 363245 S0610 S0611 kdpB kdpC TRUE 0.839 9.000 0.000 NA   NA
 363245 2179064 S0611 S0612 kdpC kdpD TRUE 0.919 -7.000 0.000 NA   NA
 2179064 2179065 S0612 S0613 kdpD kdpE TRUE 0.899 -3.000 0.000 NA   NA
 2179065 2179066 S0613 S0614 kdpE speF FALSE 0.005 690.000 0.000 NA   NA
 2179066 363246 S0614 S0615 speF potE TRUE 0.899 -3.000 0.000 NA   NA
 363247 363248 S0616 S0617 pgm seqA TRUE 0.669 26.000 0.151 1.000 N NA
 363249 363250 S0618 S0619 ybfF ybfE TRUE 0.563 71.000 0.276 NA   NA
 363250 363251 S0619 S0620 ybfE fldA TRUE 0.748 140.000 0.473 1.000   NA
 363251 363252 S0620 S0621 fldA fur FALSE 0.072 289.000 0.156 1.000 N NA
 363253 363254 S0622 S0623 ybfN ybfM FALSE 0.380 37.000 0.000 NA   NA
 363254 363255 S0623 S0624 ybfM glnS FALSE 0.007 579.000 0.000 1.000   NA
 363255 363256 S0624 S0625 glnS nagE FALSE 0.039 203.000 0.006 1.000 N NA
 363257 363258 S0626 S0627 nagB nagA TRUE 0.972 60.000 0.557 0.001 Y NA
 363258 363259 S0627 S0628 nagA nagC TRUE 0.996 9.000 0.571 1.000 Y NA
 363259 2179067 S0628 S0629 nagC nagD FALSE 0.302 48.000 0.000 NA   NA
 2179067 363260 S0629 S0630 nagD asnB FALSE 0.013 397.000 0.000 NA   NA
 363260 400115 S0630 S0631 asnB metT FALSE 0.015 379.000 0.000 NA   NA
 400115 400116 S0631 S0632 metT leuW TRUE 0.839 9.000 0.000 NA   NA
 400116 400117 S0632 S0634 leuW glnU TRUE 0.516 24.000 0.000 NA   NA
 400117 400118 S0634 S0636 glnU glnW FALSE 0.396 35.000 0.000 NA   NA
 400118 400119 S0636 S0637 glnW metU TRUE 0.642 16.000 0.000 NA   NA
 400120 400121 S0639 S0640 glnV glnX FALSE 0.370 38.000 0.000 NA   NA
 363262 363263 S0643 S0644 yleA ybeZ TRUE 0.497 114.000 0.220 1.000 N NA
 363263 363264 S0644 S0645 ybeZ ybeY TRUE 0.988 -3.000 0.457 NA   NA
 363264 363265 S0645 S0646 ybeY ybeX FALSE 0.370 90.000 0.150 NA   NA
 363265 363266 S0646 S0647 ybeX lnt TRUE 0.920 25.000 0.557 1.000 N NA
 363266 363267 S0647 S0648 lnt ybeJ FALSE 0.011 396.000 0.000 1.000 N NA
 363267 363268 S0648 S0649 ybeJ gltJ TRUE 0.730 170.000 0.000 0.054 Y NA
 363268 363269 S0649 S0650 gltJ gltK TRUE 0.999 0.000 0.933 0.015 Y NA
 363269 363270 S0650 S0651 gltK gltL TRUE 0.996 0.000 0.379 1.000 Y NA
 363270 363271 S0651 S0652 gltL ybeK TRUE 0.429 118.000 0.195 NA N NA
 363271 2179069 S0652 S0653 ybeK ybeW FALSE 0.202 84.000 0.000 NA   NA
 363272 363273 S0654 S0655 ybeV ybeU TRUE 0.899 -3.000 0.000 NA   NA
 363275 363276 S0657 S0658 ybeS ybeR TRUE 0.899 -3.000 0.000 NA   NA
 363279 363280 S0661 S0662 leuS rlpB TRUE 0.836 15.000 0.182 NA N NA
 363280 363281 S0662 S0663 rlpB holA TRUE 0.956 0.000 0.199 NA N NA
 363281 363282 S0663 S0664 holA ybeN TRUE 0.845 2.000 0.045 1.000 N NA
 363282 363283 S0664 S0665 ybeN phpB TRUE 0.497 24.000 0.057 1.000 N NA
 363283 363284 S0665 S0666 phpB ybeB FALSE 0.017 368.000 0.000 NA   NA
 363284 363285 S0666 S0667 ybeB ybeA TRUE 0.973 4.000 0.307 NA   NA
 363285 363286 S0667 S0668 ybeA mrdA FALSE 0.378 31.000 0.031 NA   NA
 363286 363287 S0668 S0669 mrdA mrdB TRUE 0.841 3.000 0.046 1.000 N NA
 363287 363288 S0669 S0670 mrdB rlpA TRUE 0.665 11.000 0.035 NA N NA
 363288 363289 S0670 S0671 rlpA dacA TRUE 0.912 139.000 0.475 NA Y NA
 363289 363290 S0671 S0672 dacA ybeD FALSE 0.284 111.000 0.081 NA   NA
 363290 363291 S0672 S0673 ybeD lipB TRUE 0.508 101.000 0.219 NA   NA
 363291 363292 S0673 S0674 lipB ybeF FALSE 0.009 412.000 0.000 1.000 N NA
 363292 363293 S0674 S0675 ybeF lipA FALSE 0.036 209.000 0.005 1.000 N NA
 363294 363295 S0676 S0677 ybeC ybeM TRUE 0.507 129.000 0.196 1.000   NA
 363295 2179070 S0677 S0678 ybeM ybeH TRUE 0.467 28.000 0.000 NA   NA
 363297 363298 S0680 S0681 cspE crcA TRUE 0.542 175.000 0.333 1.000   NA
 2179071 363300 S0683 S0684 citB   FALSE 0.021 338.000 0.000 NA   NA
 363301 363302 S0685 S0686     TRUE 0.479 62.000 0.000 0.078   NA
 363302 363303 S0686 S0687     TRUE 0.806 141.000 0.182 1.000 Y NA
 363304 363305 S0688 S0689     FALSE 0.344 42.000 0.000 NA   NA
 363305 363306 S0689 S0690     TRUE 0.987 12.000 1.000 NA   NA
 363306 363307 S0690 S0691     TRUE 0.428 32.000 0.000 NA   NA
 363307 363308 S0691 S0692     TRUE 0.862 4.000 0.000 NA   NA
 363308 363309 S0692 S0693     TRUE 0.862 4.000 0.000 NA   NA
 363309 363310 S0693 S0694     FALSE 0.140 176.000 0.000 NA   NA
 363310 363311 S0694 S0695     TRUE 0.886 0.000 0.000 NA   NA
 363311 363312 S0695 S0696     TRUE 0.925 -12.000 0.000 NA   NA
 363312 363313 S0696 S0697     TRUE 0.938 -15.000 0.000 1.000   NA
 363313 363314 S0697 S0698     TRUE 0.991 -42.000 0.000 1.000 Y NA
 363314 363315 S0698 S0699     FALSE 0.229 76.000 0.000 1.000   NA
 363315 363316 S0699 S0700     TRUE 0.989 11.000 1.000 NA   NA
 363316 363317 S0700 S0701     FALSE 0.204 70.000 0.000 NA   NA
 363317 363318 S0701 S0702     TRUE 0.899 -3.000 0.000 NA   NA
 363318 363319 S0702 S0703     FALSE 0.333 43.000 0.000 NA   NA
 363320 363321 S0704 S0705     FALSE 0.005 810.000 0.000 1.000   NA
 363321 363322 S0705 S0706     FALSE 0.333 43.000 0.000 NA   NA
 363322 363323 S0706 S0707     TRUE 0.899 -3.000 0.000 NA   NA
 363323 363324 S0707 S0708     FALSE 0.198 91.000 0.000 NA   NA
 363324 363325 S0708 S0709     TRUE 0.456 29.000 0.000 NA   NA
 363325 400122 S0709 S0710   tRNA-Met FALSE 0.113 190.000 0.000 NA   NA
 400122 400123 S0710 S0711 tRNA-Met tRNA-Arg TRUE 0.876 2.000 0.000 NA   NA
 400123 400124 S0711 S0712 tRNA-Arg tRNA-Thr TRUE 0.870 3.000 0.000 NA   NA
 400124 400125 S0712 S0713 tRNA-Thr tRNA-Gly TRUE 0.862 4.000 0.000 NA   NA
 400125 363326 S0713 S0714 tRNA-Gly ybcR FALSE 0.005 680.000 0.000 NA   NA
 363327 363328 S0715 S0716     TRUE 0.806 141.000 0.182 1.000 Y NA
 363330 363331 S0719 S0720     TRUE 0.899 -3.000 0.000 NA   NA
 363331 363332 S0720 S0721     FALSE 0.333 43.000 0.000 NA   NA
 363333 363334 S0722 S0723     TRUE 0.992 -3.000 0.000 0.084 Y NA
 363334 363335 S0723 S0724     TRUE 0.899 -3.000 0.000 NA   NA
 363335 363336 S0724 S0725     FALSE 0.201 95.000 0.000 NA   NA
 363336 363337 S0725 S0726   ybcQ TRUE 0.919 -7.000 0.000 NA   NA
 363337 400126 S0726 S0727 ybcQ tRNA-Met FALSE 0.095 200.000 0.000 NA   NA
 400126 400127 S0727 S0728 tRNA-Met tRNA-Arg TRUE 0.876 2.000 0.000 NA   NA
 400127 400128 S0728 S0729 tRNA-Arg tRNA-Thr TRUE 0.870 3.000 0.000 NA   NA
 400128 400129 S0729 S0730 tRNA-Thr tRNA-Gly TRUE 0.862 4.000 0.000 NA   NA
 400129 363338 S0730 S0731 tRNA-Gly   FALSE 0.031 293.000 0.000 NA   NA
 363338 363339 S0731 S0732     TRUE 0.862 4.000 0.000 NA   NA
 363339 363340 S0732 S0733     FALSE 0.211 66.000 0.000 NA   NA
 363340 363341 S0733 S0734     TRUE 0.913 -3.000 0.000 1.000   NA
 363341 363342 S0734 S0735     FALSE 0.253 62.000 0.000 1.000   NA
 363342 363343 S0735 S0736     TRUE 0.806 141.000 0.182 1.000 Y NA
 363343 363344 S0736 S0737     FALSE 0.024 323.000 0.000 NA   NA
 363344 363345 S0737 S0738     TRUE 0.879 1.000 0.000 NA   NA
 363345 363346 S0738 S0739     TRUE 0.913 -3.000 0.000 1.000   NA
 363346 363347 S0739 S0740     TRUE 0.990 -85.000 0.000 0.001   NA
 363347 363348 S0740 S0741     TRUE 0.970 -10.000 0.150 1.000   NA
 363348 363349 S0741 S0742     TRUE 0.419 37.000 0.000 1.000   NA
 363349 363350 S0742 S0743     FALSE 0.242 58.000 0.000 NA   NA
 363350 363351 S0743 S0744     FALSE 0.279 52.000 0.000 NA   NA
 363351 363352 S0744 S0745     TRUE 0.757 12.000 0.000 NA   NA
 363352 363353 S0745 S0746     TRUE 0.943 -13.000 0.071 NA   NA
 363353 363354 S0746 S0747     TRUE 0.995 -3.000 1.000 NA   NA
 363354 363355 S0747 S0748     TRUE 0.989 11.000 1.000 NA   NA
 363355 363356 S0748 S0749     FALSE 0.235 59.000 0.000 NA   NA
 363356 363357 S0749 S0750     FALSE 0.220 63.000 0.000 NA   NA
 363357 363358 S0750 S0751     TRUE 0.991 -28.000 0.400 NA   NA
 363358 363359 S0751 S0752     TRUE 0.984 0.000 0.400 NA   NA
 363359 363360 S0752 S0753     TRUE 0.886 0.000 0.000 NA   NA
 363360 363361 S0753 S0754     FALSE 0.199 149.000 0.000 NA   NA
 363361 363362 S0754 S0755     TRUE 0.899 -3.000 0.000 NA   NA
 363362 363363 S0755 S0756     TRUE 0.756 61.000 0.500 NA   NA
 363363 363364 S0756 S0757     FALSE 0.207 68.000 0.000 NA   NA
 363364 363365 S0757 S0758     FALSE 0.245 64.000 0.000 1.000   NA
 363365 363366 S0758 S0759     FALSE 0.030 301.000 0.000 NA   NA
 363368 363369 S0764 S0765 ybhB bioA FALSE 0.143 59.000 0.003 NA   NA
 363370 363371 S0766 S0767 bioB bioF TRUE 0.997 -3.000 0.168 0.002 Y NA
 363371 363372 S0767 S0768 bioF bioC TRUE 0.997 -13.000 0.133 0.002 Y NA
 363372 363373 S0768 S0769 bioC bioD TRUE 0.996 -7.000 0.054 0.002 Y NA
 363373 363374 S0769 S0770 bioD uvrB FALSE 0.015 579.000 0.000 0.083 N NA
 363376 363377 S0772 S0773 moaA moaB TRUE 0.967 22.000 0.108 0.003 Y NA
 363377 363378 S0773 S0774 moaB moaC TRUE 0.994 3.000 0.109 0.003 Y NA
 363378 363379 S0774 S0775 moaC moaD TRUE 0.997 -7.000 0.175 0.003 Y NA
 363379 363380 S0775 S0776 moaD moaE TRUE 0.999 2.000 0.501 0.003 Y NA
 363380 363381 S0776 S0777 moaE ybhL FALSE 0.167 137.000 0.025 NA   NA
 363381 363382 S0777 S0778 ybhL ybhM FALSE 0.078 205.000 0.037 NA   NA
 363383 363384 S0779 S0780 ybhN ybhO TRUE 0.910 0.000 0.071 NA   NA
 363384 363385 S0780 S0781 ybhO ybhP TRUE 0.983 -3.000 0.333 NA   NA
 363387 363388 S0783 S0784 ybhR ybhS TRUE 0.998 11.000 0.609 0.005 Y NA
 363388 363389 S0784 S0785 ybhS ybhF TRUE 0.996 -7.000 0.547 0.083   NA
 363389 363390 S0785 S0786 ybhF   TRUE 0.994 -22.000 0.545 1.000   NA
 363390 363391 S0786 S0787   ybiH TRUE 0.968 0.000 0.236 1.000 N NA
 363394 363395 S0790 S0791 dinG ybiB FALSE 0.388 28.000 0.041 1.000 N NA
 363395 363396 S0791 S0792 ybiB ybiC TRUE 0.439 141.000 0.000 0.047 N NA
 363397 363398 S0793 S0794 ybiJ ybiI FALSE 0.031 265.000 0.027 NA   NA
 363398 363399 S0794 S0795 ybiI ybiX FALSE 0.230 74.000 0.000 1.000   NA
 363399 2179073 S0795 S0798 ybiX   FALSE 0.344 42.000 0.000 NA   NA
 2179074 363403 S0801 S0802 ybiO glnQ FALSE 0.016 371.000 0.000 NA   NA
 363403 363404 S0802 S0803 glnQ glnP TRUE 0.985 -3.000 0.038 1.000 Y NA
 363404 363405 S0803 S0804 glnP glnH TRUE 0.808 139.000 0.051 0.066 Y NA
 363405 363406 S0804 S0805 glnH dps FALSE 0.010 404.000 0.000 1.000 N NA
 363406 363407 S0805 S0806 dps ybiF FALSE 0.034 299.000 0.044 1.000   NA
 2179075 363410 S0809 S0810     FALSE 0.051 246.000 0.000 NA   NA
 363410 363411 S0810 S0811   ybiR TRUE 0.804 -3.000 0.014 1.000 N NA
 363414 363415 S0814 S0815 ybiU   FALSE 0.189 152.000 0.000 NA   NA
 363415 363416 S0815 S0816   ybiW FALSE 0.234 146.000 0.000 1.000   NA
 363416 363417 S0816 S0817 ybiW ybiY TRUE 0.988 6.000 0.316 0.003 N NA
 363419 363420 S0819 S0820 moeB moeA TRUE 0.998 0.000 0.323 0.003 Y NA
 363421 363422 S0821 S0822 ybiK   TRUE 0.723 20.000 0.104 1.000   NA
 363422 363423 S0822 S0823     TRUE 0.688 20.000 0.083 1.000   NA
 363423 363424 S0823 S0824     TRUE 0.995 18.000 0.803 0.052 Y NA
 363424 363425 S0824 S0825     TRUE 0.999 3.000 0.689 0.052 Y NA
 363425 2179076 S0825 S0826     FALSE 0.136 178.000 0.000 NA   NA
 2179076 363426 S0826 S0827     TRUE 0.843 8.000 0.000 NA   NA
 363428 2179077 S0829 S0830   yliI FALSE 0.219 111.000 0.000 NA   NA
 2179078 363430 S0832 S0833 dacC   TRUE 0.953 -1324.000 0.000 NA   NA
 363430 363431 S0833 S0834     TRUE 0.806 141.000 0.182 1.000 Y NA
 363432 363433 S0836 S0837 deoR ybjG TRUE 0.602 58.000 0.235 1.000   NA
 363435 363436 S0839 S0840 ybjH   FALSE 0.201 86.000 0.000 NA   NA
 363436 363437 S0840 S0841     TRUE 0.518 27.000 0.000 1.000   NA
 363442 363443 S0846 S0847 ybjC mdaA TRUE 0.971 -16.000 0.159 NA   NA
 363443 363444 S0847 S0848 mdaA rimK FALSE 0.192 61.000 0.000 1.000 N NA
 363444 363445 S0848 S0849 rimK ybjN FALSE 0.232 88.000 0.065 NA   NA
 363445 363446 S0849 S0850 ybjN potF FALSE 0.019 352.000 0.000 NA   NA
 363446 363447 S0850 S0851 potF potG TRUE 0.939 95.000 0.679 1.000 Y NA
 363447 363448 S0851 S0852 potG potH TRUE 0.997 10.000 0.857 1.000 Y NA
 363448 363449 S0852 S0853 potH potI TRUE 0.999 -3.000 0.528 0.052 Y NA
 363449 363450 S0853 S0854 potI ybjO TRUE 0.591 60.000 0.264 NA   NA
 363450 363451 S0854 S0855 ybjO ybjF TRUE 0.691 41.000 0.226 NA   NA
 363452 363453 S0856 S0857 artJ artM TRUE 0.430 292.000 0.143 0.066 Y NA
 363453 363454 S0857 S0858 artM artQ TRUE 0.999 0.000 0.714 0.015 Y NA
 363454 363455 S0858 S0859 artQ artI TRUE 0.995 7.000 0.260 0.052 Y NA
 363455 363456 S0859 S0860 artI artP TRUE 0.976 18.000 0.323 1.000 Y NA
 363456 363457 S0860 S0861 artP ybjP FALSE 0.100 218.000 0.081 NA   NA
 363457 363458 S0861 S4813 ybjP   TRUE 0.688 14.000 0.000 NA   NA
 363459 363460 S4814 S0862     FALSE 0.084 210.000 0.000 NA   NA
 363460 363461 S0862 S0863     TRUE 0.899 -3.000 0.000 NA   NA
 363462 363463 S0864 S0865   ybjT TRUE 0.823 63.000 0.022 0.003 Y NA
 363463 363464 S0865 S0866 ybjT ybjU TRUE 0.813 11.000 0.074 1.000 N NA
 363464 363465 S0866 S0867 ybjU poxB TRUE 0.821 37.000 0.041 1.000 Y NA
 363465 363466 S0867 S0868 poxB   FALSE 0.133 133.000 0.025 1.000 N NA
 363466 363467 S0868 S0869   ybjW TRUE 0.981 12.000 0.000 0.017 Y NA
 363467 363468 S0869 S0870 ybjW ybjE FALSE 0.238 144.000 0.000 1.000   NA
 363468 363469 S0870 S0871 ybjE   FALSE 0.229 76.000 0.000 1.000   NA
 363469 363470 S0871 S0872     TRUE 0.991 -42.000 0.000 1.000 Y NA
 363470 363471 S0872 S0873   aqpZ FALSE 0.008 441.000 0.000 1.000 N NA
 363471 363472 S0873 S0874 aqpZ   FALSE 0.238 52.000 0.000 1.000 N NA
 363472 363473 S0874 S0875     TRUE 0.992 -81.000 0.000 NA Y NA
 363476 363477 S0878 S0879   ybjZ TRUE 0.996 -3.000 0.789 0.092 N NA
 363479 363480 S0881 S0882 yljA clpA TRUE 0.912 31.000 0.596 NA   NA
 400203 363481 S0883 S0884 serW infA FALSE 0.047 254.000 0.000 NA   NA
 363481 363482 S0884 S0885 infA aat FALSE 0.018 285.000 0.020 1.000 N NA
 363482 363483 S0885 S0886 aat cydC TRUE 0.805 42.000 0.049 1.000 Y NA
 363483 363484 S0886 S0887 cydC cydD TRUE 0.999 1.000 0.631 0.005 Y NA
 363484 363485 S0887 S0888 cydD trxB TRUE 0.681 123.000 0.049 1.000 Y NA
 363486 363487 S0889 S0890 lrp ftsK TRUE 0.637 135.000 0.345 1.000 N NA
 363487 363488 S0890 S0891 ftsK lolA TRUE 0.550 152.000 0.305 1.000 N NA
 363488 363489 S0891 S0892 lolA ycaJ TRUE 0.904 11.000 0.167 1.000 N NA
 363489 363490 S0892 S0893 ycaJ serS TRUE 0.430 91.000 0.078 0.082 N NA
 363490 363491 S0893 S0894 serS dmsA FALSE 0.019 327.000 0.000 1.000 N NA
 363491 363492 S0894 S0895 dmsA dmsB TRUE 0.991 11.000 0.172 0.051 Y NA
 363492 363493 S0895 S0896 dmsB dmsC TRUE 0.980 2.000 0.333 1.000   NA
 363495 363496 S0898 S0899 ycaD   FALSE 0.022 313.000 0.000 1.000 N NA
 363496 363497 S0899 S0900     TRUE 0.899 -3.000 0.000 NA   NA
 363497 363498 S0900 S0901     TRUE 0.899 -3.000 0.000 NA   NA
 2179079 363499 S0903 S0905     FALSE 0.333 43.000 0.000 NA   NA
 363499 363500 S0905 S0906     TRUE 0.930 -19.000 0.000 NA   NA
 363500 363501 S0906 S0907     TRUE 0.899 -3.000 0.000 NA   NA
 363501 363502 S0907 S0908     TRUE 0.886 0.000 0.000 NA   NA
 363503 363504 S0909 S0910     TRUE 0.806 141.000 0.182 1.000 Y NA
 363505 363506 S0911 S0912     FALSE 0.006 576.000 0.000 NA   NA
 363506 363507 S0912 S0913     FALSE 0.035 284.000 0.000 NA   NA
 363507 363508 S0913 S0914     FALSE 0.005 682.000 0.000 NA   NA
 363508 2179080 S0914 S0916     TRUE 0.665 15.000 0.000 NA   NA
 2179080 363509 S0916 S0917     FALSE 0.206 146.000 0.000 NA   NA
 363509 363510 S0917 S0918     FALSE 0.202 78.000 0.000 NA   NA
 363510 363511 S0918 S0919     TRUE 0.928 -16.000 0.000 NA   NA
 363512 363513 S0920 S0921     TRUE 0.994 2.000 1.000 NA   NA
 363514 363515 S0922 S0923     TRUE 0.991 -42.000 0.000 1.000 Y NA
 363516 363517 S0924 S0925     TRUE 0.934 -39.000 0.000 NA   NA
 363517 363518 S0925 S0927     FALSE 0.008 514.000 0.000 NA   NA
 363518 363519 S0927 S0928     TRUE 0.806 141.000 0.182 1.000 Y NA
 363520 363521 S0929 S0930     FALSE 0.020 344.000 0.000 NA   NA
 363521 363522 S0930 S0931     FALSE 0.037 415.000 0.182 1.000   NA
 363526 363527 S0937 S0938 ybhH ybhI FALSE 0.218 139.000 0.000 NA   NA
 363527 363528 S0938 S0939 ybhI ybhJ TRUE 0.426 183.000 0.300 1.000 N NA
 363529 363530 S0940 S0941 ybhC   TRUE 0.465 135.000 0.200 1.000 N NA
 363530 363531 S0941 S0942     TRUE 0.582 212.000 0.000 0.040 Y NA
 363531 363532 S0942 S0943     TRUE 0.806 141.000 0.182 1.000 Y NA
 363533 363534 S0944 S0945     FALSE 0.243 125.000 0.000 1.000   NA
 363534 363535 S0945 S0946     TRUE 0.899 -3.000 0.000 NA   NA
 363535 363536 S0946 S0947     TRUE 0.899 -3.000 0.000 NA   NA
 363536 363537 S0947 S0948     TRUE 0.851 6.000 0.000 NA   NA
 363537 363538 S0948 S0949     TRUE 0.984 0.000 0.000 1.000 Y NA
 363538 363539 S0949 S0950     TRUE 0.928 -16.000 0.000 NA   NA
 363540 363541 S0952 S0953     TRUE 0.992 -81.000 0.000 NA Y NA
 363541 2179083 S0953 S0954   ycaN TRUE 0.927 -13.000 0.000 NA   NA
 363542 363543 S0956 S0957     TRUE 0.806 141.000 0.182 1.000 Y NA
 363544 363545 S0958 S0959     TRUE 0.684 115.000 0.000 1.000 Y NA
 363545 363546 S0959 S0960     TRUE 0.806 141.000 0.182 1.000 Y NA
 363546 363547 S0960 S0961   pflA FALSE 0.010 409.000 0.000 1.000 N NA
 363547 363548 S0961 S0962 pflA pflB FALSE 0.142 192.000 0.092 1.000 N NA
 363548 363549 S0962 S0963 pflB focA TRUE 0.685 55.000 0.345 1.000 N NA
 363549 363550 S0963 S0964 focA ycaO FALSE 0.012 406.000 0.000 NA   NA
 2179085 363551 S0965 S0966 ycaP serC FALSE 0.098 199.000 0.000 NA   NA
 363551 363552 S0966 S0967 serC aroA TRUE 0.644 71.000 0.033 1.000 Y NA
 363552 363553 S0967 S0968 aroA yi41 FALSE 0.177 144.000 0.000 1.000 N NA
 363553 363554 S0968 S0969 yi41 ycaL FALSE 0.184 136.000 0.000 1.000 N NA
 363554 363555 S0969 S0970 ycaL cmk FALSE 0.062 173.000 0.004 1.000 N NA
 363555 363556 S0970 S0971 cmk rpsA TRUE 0.567 111.000 0.281 1.000 N NA
 363556 363557 S0971 S0972 rpsA himD TRUE 0.506 160.000 0.292 1.000 N NA
 363557 2179086 S0972 S0973 himD ycaI FALSE 0.216 129.000 0.000 NA   NA
 2179086 363558 S0973 S0974 ycaI msbA FALSE 0.380 37.000 0.000 NA   NA
 363558 363559 S0974 S0975 msbA ycaH TRUE 0.966 -3.000 0.205 1.000 N NA
 363559 363560 S0975 S0976 ycaH ycaQ FALSE 0.283 37.000 0.017 NA   NA
 363560 363561 S0976 S0977 ycaQ ycaR FALSE 0.198 52.000 0.016 NA   NA
 363561 363562 S0977 S0978 ycaR kdsB TRUE 0.978 -3.000 0.265 NA   NA
 363562 363563 S0978 S0979 kdsB   FALSE 0.137 154.000 0.023 NA   NA
 363565 363566 S0981 S0982 smtA mukF TRUE 0.979 -3.000 0.325 NA N NA
 363566 363567 S0982 S0983 mukF mukE TRUE 0.973 8.000 0.036 NA Y NA
 363567 363568 S0983 S0984 mukE mukB TRUE 0.994 0.000 0.000 0.001 Y NA
 363568 363569 S0984 S0985 mukB   FALSE 0.141 163.000 0.000 1.000 N NA
 363569 363570 S0985 S0986   ycbB FALSE 0.100 208.000 0.000 1.000   NA
 363570 363571 S0986 S0987 ycbB ycbK TRUE 0.528 181.000 0.372 NA   NA
 363571 363572 S0987 S0988 ycbK ycbL TRUE 0.583 27.000 0.089 NA   NA
 363573 363574 S0989 S0990 aspC ompF FALSE 0.082 185.000 0.036 1.000 N NA
 363574 363575 S0990 S0991 ompF asnS FALSE 0.005 601.000 0.000 1.000 N NA
 363575 363576 S0991 S0992 asnS pncB FALSE 0.104 169.000 0.034 1.000 N NA
 363578 2179087 S0994 S0998 ycbE ycbM TRUE 0.899 -3.000 0.000 NA   NA
 2179087 363579 S0998 S0996 ycbM   TRUE 0.953 -1499.000 0.000 NA   NA
 363579 363580 S0996 S0997     TRUE 0.991 -42.000 0.000 1.000 Y NA
 363580 363581 S0997 S0999   ycbN FALSE 0.029 283.000 0.000 1.000 N NA
 363581 363582 S0999 S1000 ycbN ycbO TRUE 0.982 -3.000 0.341 1.000 N NA
 363582 363583 S1000 S1001 ycbO ycbP TRUE 0.972 -7.000 0.169 1.000   NA
 363584 2179088 S1002 S1003   ycbQ TRUE 0.605 18.000 0.000 NA   NA
 363585 363586 S1004 S1005     TRUE 0.992 -81.000 0.000 NA Y NA
 363587 363588 S1006 S1007 ycbS   TRUE 0.989 -9.000 0.000 1.000 Y NA
 363588 363589 S1007 S1008     TRUE 0.826 98.000 0.000 0.004 Y NA
 363589 363590 S1008 S1009     TRUE 0.999 -40.000 0.667 0.004 Y NA
 363590 363591 S1009 S1010   ycbF TRUE 0.998 -34.000 0.500 1.000 Y NA
 363591 363592 S1010 S1011 ycbF pyrD FALSE 0.185 112.000 0.000 1.000 N NA
 363592 363593 S1011 S1012 pyrD ycbW FALSE 0.283 138.000 0.081 NA   NA
 363595 363596 S1014 S1015 ycbY uup TRUE 0.810 12.000 0.061 1.000   NA
 363596 363597 S1015 S1016 uup pqiA FALSE 0.231 130.000 0.054 NA   NA
 363597 363598 S1016 S1017 pqiA pqiB TRUE 0.992 5.000 0.819 NA   NA
 363598 363599 S1017 S1018 pqiB ymbA TRUE 0.990 -3.000 0.531 NA   NA
 363599 363600 S1018 S1019 ymbA rmf FALSE 0.046 256.000 0.000 NA   NA
 363601 363602 S1020 S1021 fabA   TRUE 0.558 69.000 0.290 1.000 N NA
 363604 363605 S1023 S1024 ompA sulA FALSE 0.015 356.000 0.000 1.000 N NA
 363606 363607 S1025 S1026     FALSE 0.142 76.000 0.000 NA N NA
 363607 363608 S1026 S1027     TRUE 0.940 -21.000 0.000 1.000   NA
 363609 363610 S1028 S1029   yccF TRUE 0.880 10.000 0.090 NA   NA
 363612 363613 S1031 S1032 mgsA   FALSE 0.218 96.000 0.055 NA   NA
 363615 363616 S1034 S1035 yccV   TRUE 0.899 7.000 0.094 NA   NA
 363618 363619 S1037 S1038 yccK yccA FALSE 0.380 91.000 0.140 1.000   NA
 363619 400202 S1038 S1039 yccA serT FALSE 0.087 207.000 0.000 NA   NA
 363620 363621 S1040 S1041 hyaA hyaB TRUE 0.995 -3.000 0.000 0.001 Y NA
 363621 363622 S1041 S1042 hyaB hyaC TRUE 0.987 19.000 0.355 0.050 Y NA
 363622 363623 S1042 S1043 hyaC hyaD TRUE 0.992 -3.000 0.177 1.000 Y NA
 363623 363624 S1043 S1044 hyaD hyaE TRUE 0.935 -3.000 0.096 NA   NA
 363624 363625 S1044 S1045 hyaE hyaF TRUE 0.994 -3.000 0.769 NA   NA
 363625 363626 S1045 S1046 hyaF appC FALSE 0.275 134.000 0.061 1.000   NA
 363626 363627 S1046 S1047 appC appB TRUE 0.988 12.000 0.158 0.050 Y NA
 363627 363628 S1047 S1048 appB appA FALSE 0.141 184.000 0.000 1.000   NA
 2179089 363629 S1050 S1051 yccC etp FALSE 0.195 150.000 0.000 NA   NA
 363629 363630 S1051 S1052 etp yccZ TRUE 0.995 -12.000 0.750 1.000 N NA
 363630 363631 S1052 S1053 yccZ ymcA FALSE 0.313 46.000 0.000 NA   NA
 363631 363632 S1053 S1054 ymcA ymcB TRUE 0.901 0.000 0.060 NA   NA
 363632 363633 S1054 S1055 ymcB ymcC TRUE 0.992 -3.000 0.600 NA   NA
 363633 363634 S1055 S1056 ymcC ymcD FALSE 0.216 107.000 0.000 NA   NA
 363634 363635 S1056 S1057 ymcD cspH FALSE 0.011 424.000 0.000 NA   NA
 363636 363637 S1058 S1059     TRUE 0.992 -81.000 0.000 NA Y NA
 363637 363638 S1059 S1060   cspG TRUE 0.489 22.000 0.000 1.000 N NA
 363638 363639 S1060 S1061 cspG ymcE FALSE 0.143 174.000 0.000 NA   NA
 363640 2179090 S1062 S1063 yccM torS FALSE 0.203 72.000 0.000 NA   NA
 363643 2179091 S1066 S1067 torC torA TRUE 0.886 0.000 0.000 NA   NA
 2179091 2179092 S1067 S1068 torA torD TRUE 0.899 -3.000 0.000 NA   NA
 363644 363645 S1069 S1070     TRUE 0.992 -81.000 0.000 NA Y NA
 363645 363646 S1070 S1072   yccD FALSE 0.007 566.000 0.000 NA   NA
 363646 363647 S1072 S1073 yccD cbpA TRUE 0.989 0.000 0.512 NA   NA
 363648 363649 S1074 S1075 yccE agp FALSE 0.031 293.000 0.000 NA   NA
 363650 363651 S1076 S1077 yccJ wrbA TRUE 0.872 21.000 0.290 NA   NA
 363653 363654 S1079 S1080 ycdG   TRUE 0.995 -45.000 0.533 1.000   NA
 363654 363655 S1080 S1081     TRUE 0.932 47.000 0.625 0.028   NA
 363655 363656 S1081 S1082     TRUE 0.961 10.000 0.256 1.000   NA
 363656 363657 S1082 S1083     TRUE 0.976 8.000 0.365 NA   NA
 363657 363658 S1083 S1084     TRUE 0.960 12.000 0.442 NA N NA
 363658 363659 S1084 S1085     TRUE 0.994 -42.000 0.621 NA N NA
 363661 363662 S1087 S1088     TRUE 0.660 17.000 0.000 1.000   NA
 363663 363664 S1089 S1090   ycdO TRUE 0.900 58.000 0.356 NA Y NA
 363664 363665 S1090 S1091 ycdO ycdB TRUE 0.994 6.000 0.378 NA Y NA
 363665 2179093 S1091 S1092 ycdB phoH FALSE 0.010 436.000 0.000 NA   NA
 363666 363667 S1093 S1094     TRUE 0.913 -3.000 0.000 1.000   NA
 2179094 363668 S1095 S1096   ycdU FALSE 0.219 109.000 0.000 NA   NA
 363668 2179095 S1096 S1097 ycdU   FALSE 0.214 119.000 0.000 NA   NA
 2179095 2179096 S1097 S1098   ycdV TRUE 0.939 -77.000 0.000 NA   NA
 2179097 363669 S1100 S1101 ycdW ycdX FALSE 0.257 55.000 0.000 NA   NA
 363669 363670 S1101 S1102 ycdX ycdY TRUE 0.908 24.000 0.417 1.000   NA
 363670 363671 S1102 S1103 ycdY ycdZ FALSE 0.371 72.000 0.145 NA   NA
 2179098 363672 S1104 S1105 csgG csgF FALSE 0.045 257.000 0.000 NA   NA
 363672 363673 S1105 S1106 csgF csgE TRUE 0.945 25.000 0.723 NA   NA
 363673 363674 S1106 S1107 csgE csgD TRUE 0.945 5.000 0.176 NA   NA
 363675 2179099 S1108 S1109 csgB csgA FALSE 0.352 41.000 0.000 NA   NA
 2179099 363676 S1109 S1110 csgA   TRUE 0.952 -475.000 0.000 NA   NA
 363676 363677 S1110 S1111     TRUE 0.682 141.000 0.000 1.000 Y NA
 363677 363678 S1111 S1113   csgC FALSE 0.013 405.000 0.000 NA   NA
 363678 363679 S1113 S1114 csgC   TRUE 0.709 121.000 0.429 NA   NA
 363679 363680 S1114 S1115     FALSE 0.158 95.000 0.028 NA   NA
 363680 363681 S1115 S1116   ymdC TRUE 0.937 -58.000 0.046 NA   NA
 363683 363684 S1118 S1119 mdoG mdoH TRUE 0.990 -7.000 0.469 1.000 N NA
 363685 363686 S1120 S4816     TRUE 0.901 0.000 0.000 1.000   NA
 363687 363688 S4815 S4817     TRUE 0.899 -3.000 0.000 NA   NA
 363689 363690 S1123 S1124     FALSE 0.254 263.000 0.000 1.000 Y NA
 363691 363692 S1126 S1127     TRUE 0.503 189.000 0.000 1.000 Y NA
 363694 363695 S1129 S1130     TRUE 0.991 -42.000 0.000 1.000 Y NA
 363695 363696 S1130 S1131     FALSE 0.097 396.000 0.000 1.000 Y NA
 363696 363697 S1131 S1132     FALSE 0.323 236.000 0.000 1.000 Y NA
 363697 363698 S1132 S1133     FALSE 0.214 288.000 0.000 1.000 Y NA
 363698 363699 S1133 S1134     FALSE 0.244 141.000 0.000 1.000   NA
 363699 363700 S1134 S1135     TRUE 0.950 9.000 0.000 0.040   NA
 363701 2179100 S1136 S1137   yceE TRUE 0.419 33.000 0.000 NA   NA
 2179100 363702 S1137 S1138 yceE htrB FALSE 0.147 172.000 0.000 NA   NA
 363704 363705 S1140 S1141 yceI   TRUE 0.991 4.000 0.676 1.000   NA
 363705 363706 S1141 S1142   yceO FALSE 0.044 261.000 0.000 NA   NA
 363706 363707 S1142 S1143 yceO solA TRUE 0.682 48.000 0.269 NA   NA
 363707 363708 S1143 S1144 solA bssS TRUE 0.708 115.000 0.423 NA   NA
 363708 363709 S1144 S1145 bssS dinI FALSE 0.033 290.000 0.000 NA   NA
 363709 363710 S1145 S1146 dinI pyrC FALSE 0.165 74.000 0.031 NA   NA
 363710 363711 S1146 S1147 pyrC yceB FALSE 0.159 106.000 0.022 NA   NA
 363711 363712 S1147 S1148 yceB grxB FALSE 0.276 134.000 0.078 NA   NA
 363712 363713 S1148 S1149 grxB yceL FALSE 0.287 64.000 0.103 1.000 N NA
 363714 363715 S1150 S1151 rimJ yceH TRUE 0.880 11.000 0.116 NA   NA
 363715 363716 S1151 S1152 yceH mviM TRUE 0.923 2.000 0.103 NA   NA
 363716 363717 S1152 S1153 mviM mviN FALSE 0.083 200.000 0.022 1.000   NA
 363718 363719 S1154 S1155 flgN flgM TRUE 0.998 5.000 0.361 0.002 Y NA
 363719 363720 S1155 S1156 flgM flgA TRUE 0.864 76.000 0.330 NA Y NA
 363721 2179101 S1157 S1158 flgB flgC TRUE 0.862 4.000 0.000 NA   NA
 2179101 363722 S1158 S1159 flgC flgD TRUE 0.757 12.000 0.000 NA   NA
 363722 363723 S1159 S1160 flgD flgE TRUE 0.911 25.000 0.116 NA Y NA
 363723 2179102 S1160 S1161 flgE flgF TRUE 0.571 20.000 0.000 NA   NA
 2179102 363724 S1161 S1162 flgF flgG FALSE 0.218 138.000 0.000 NA   NA
 363724 363725 S1162 S1163 flgG flgH TRUE 0.947 53.000 0.268 0.004 Y NA
 363725 363726 S1163 S1164 flgH flgI TRUE 0.985 12.000 0.073 0.005 Y NA
 363726 363727 S1164 S1165 flgI flgJ TRUE 0.992 0.000 0.036 0.005 Y NA
 363727 2179103 S1165 S1166 flgJ flgK FALSE 0.211 66.000 0.000 NA   NA
 2179103 2179104 S1166 S1167 flgK flgL TRUE 0.757 12.000 0.000 NA   NA
 363729 363730 S1169 S1170   yceC FALSE 0.132 118.000 0.005 NA   NA
 363732 363733 S1172 S1173 yceD rpmF TRUE 0.838 52.000 0.599 NA   NA
 363733 363734 S1173 S1174 rpmF plsX TRUE 0.666 81.000 0.418 1.000 N NA
 363734 363735 S1174 S1175 plsX fabH TRUE 0.948 68.000 0.380 0.004 Y NA
 363735 363736 S1175 S1176 fabH fabD TRUE 0.984 16.000 0.182 0.004 Y NA
 363736 363737 S1176 S1177 fabD fabG TRUE 0.995 13.000 0.432 0.004 Y NA
 363737 363738 S1177 S1178 fabG acpP TRUE 0.838 211.000 0.321 0.004 Y NA
 363738 363739 S1178 S1179 acpP fabF TRUE 0.879 87.000 0.346 1.000 Y NA
 363739 363740 S1179 S1180 fabF pabC TRUE 0.445 120.000 0.187 1.000 N NA
 363740 363741 S1180 S1181 pabC yceG TRUE 0.960 3.000 0.204 NA   NA
 363741 363742 S1181 S1182 yceG tmk TRUE 0.978 -10.000 0.209 NA   NA
 363742 363743 S1182 S1183 tmk holB TRUE 0.967 -3.000 0.211 1.000 N NA
 363743 363744 S1183 S1184 holB ycfH TRUE 0.975 11.000 0.110 NA Y NA
 363744 363745 S1184 S1185 ycfH ptsG FALSE 0.008 295.000 0.004 NA N NA
 363746 363747 S1187 S1188 ycfF ycfL TRUE 0.875 3.000 0.051 NA   NA
 363747 363748 S1188 S1189 ycfL ycfM TRUE 0.957 15.000 0.516 NA   NA
 363748 363749 S1189 S1190 ycfM ycfN TRUE 0.987 -19.000 0.310 NA   NA
 363749 363750 S1190 S1191 ycfN ycfO TRUE 0.805 11.000 0.069 1.000 N NA
 363750 363751 S1191 S1192 ycfO ycfP TRUE 0.633 23.000 0.091 NA   NA
 363751 363752 S1192 S1193 ycfP ndh FALSE 0.014 408.000 0.057 NA   NA
 363752 363753 S1193 S1194 ndh ycfJ FALSE 0.096 227.000 0.071 1.000   NA
 363756 363757 S1197 S1198 ycfS mfd FALSE 0.160 143.000 0.006 1.000   NA
 363757 363758 S1198 S1199 mfd ycfT FALSE 0.159 128.000 0.003 1.000   NA
 363759 363760 S1200 S1201 ycfU ycfV TRUE 0.985 -7.000 0.175 0.064 N NA
 363760 363761 S1201 S1202 ycfV ycfW TRUE 0.971 0.000 0.125 0.064 N NA
 363761 363762 S1202 S1203 ycfW ycfX TRUE 0.755 29.000 0.225 1.000 N NA
 363762 363763 S1203 S1204 ycfX cobB TRUE 0.952 16.000 0.119 1.000 Y NA
 363764 363765 S1205 S1206 potD potC TRUE 0.993 -3.000 0.000 0.051 Y NA
 363765 363766 S1206 S1207 potC potB TRUE 0.997 -3.000 0.286 0.051 Y NA
 363766 363767 S1207 S1208 potB potA TRUE 0.999 -16.000 0.789 1.000 Y NA
 363770 363771 S1211 S1212     FALSE 0.003 1274.000 0.000 NA   NA
 363771 363772 S1212 S1214     FALSE 0.005 665.000 0.000 NA   NA
 363772 363773 S1214 S1215     TRUE 0.899 -3.000 0.000 NA   NA
 363773 363774 S1215 S1216     FALSE 0.017 367.000 0.000 NA   NA
 363774 363775 S1216 S1217     TRUE 0.899 -3.000 0.000 NA   NA
 363775 363776 S1217 S1218     TRUE 0.827 10.000 0.000 NA   NA
 363776 363777 S1218 S1219     FALSE 0.211 142.000 0.000 NA   NA
 363777 2179106 S1219 S1221     FALSE 0.030 301.000 0.000 NA   NA
 2179106 363778 S1221 S1222     FALSE 0.358 40.000 0.000 NA   NA
 363778 363779 S1222 S1223     TRUE 0.434 38.000 0.071 NA   NA
 363779 363780 S1223 S1224     FALSE 0.320 45.000 0.000 NA   NA
 363780 363781 S1224 S1225     TRUE 0.899 -3.000 0.000 NA   NA
 363781 363782 S1225 S1226     FALSE 0.065 228.000 0.000 NA   NA
 363782 363783 S1226 S1227     FALSE 0.057 237.000 0.000 NA   NA
 363783 363784 S1227 S1228     TRUE 0.635 167.000 0.444 NA   NA
 363784 363785 S1228 S1229     TRUE 0.688 14.000 0.000 NA   NA
 363786 363787 S1231 S1232 phoQ phoP TRUE 0.999 0.000 0.940 1.000 Y NA
 363787 363788 S1232 S1233 phoP purB FALSE 0.073 169.000 0.011 1.000 N NA
 363788 363789 S1233 S1234 purB ycfC TRUE 0.908 4.000 0.093 NA   NA
 363789 363790 S1234 S1235 ycfC trmU TRUE 0.654 36.000 0.180 NA   NA
 363790 363791 S1235 S1236 trmU   TRUE 0.447 54.000 0.158 1.000 N NA
 363791 363792 S1236 S1237   ymfC TRUE 0.931 10.000 0.182 1.000 N NA
 363794 363795 S1239 S1240     TRUE 0.992 -81.000 0.000 NA Y NA
 363796 363797 S1241 S1242     FALSE 0.002 1077.000 0.000 NA N NA
 363798 363799 S1244 S1245     TRUE 0.862 4.000 0.000 NA   NA
 363801 363802 S1247 S1248 minE minD TRUE 0.997 4.000 0.618 NA Y NA
 363802 363803 S1248 S1249 minD minC TRUE 0.976 24.000 0.466 1.000 Y NA
 363805 363806 S1253 S1254     TRUE 0.913 -3.000 0.000 1.000   NA
 363807 363808 S1256 S1257 ycgL   FALSE 0.221 72.000 0.056 NA   NA
 363808 363809 S1257 S1258   ycgN FALSE 0.272 92.000 0.088 NA   NA
 363810 363811 S1260 S1261 umuD umuC TRUE 0.863 0.000 0.000 1.000 N NA
 363812 363813 S1262 S1263 dsbB nhaB TRUE 0.803 146.000 0.723 1.000 N NA
 363816 363817 S1266 S1267 dadA dadX TRUE 0.921 10.000 0.168 1.000 N NA
 363818 363819 S1268 S1269 ipaH_3   FALSE 0.005 727.000 0.000 NA   NA
 363819 363820 S1269 S1271     FALSE 0.243 95.000 0.103 NA N NA
 2179110 363824 S1275 S1276 prrA modD TRUE 0.488 26.000 0.000 NA   NA
 363824 363825 S1276 S1277 modD   TRUE 0.982 0.000 0.034 1.000 Y NA
 363825 363826 S1277 S1278     TRUE 0.982 10.000 0.123 1.000 Y NA
 363826 363827 S1278 S1279     TRUE 0.999 -3.000 0.862 1.000 Y NA
 363827 363828 S1279 S1280     TRUE 0.996 0.000 0.422 1.000 Y NA
 363828 363829 S1280 S1281     FALSE 0.004 713.000 0.000 1.000 N NA
 363829 363830 S1281 S1282     TRUE 0.992 -81.000 0.000 NA Y NA
 363831 363832 S1284 S1285 treA ycgC FALSE 0.029 320.000 0.000 1.000   NA
 363832 363833 S1285 S1286 ycgC   TRUE 0.893 11.000 0.118 1.000   NA
 363833 363834 S1286 S1287     TRUE 0.995 11.000 0.226 0.001 Y NA
 363836 363837 S1289 S1290   ychF FALSE 0.003 844.000 0.000 1.000 N NA
 363837 363838 S1290 S1291 ychF pth TRUE 0.812 117.000 0.184 1.000 Y NA
 363840 363841 S1293 S1294 ychM prsA FALSE 0.117 152.000 0.027 1.000 N NA
 363841 363842 S1294 S1295 prsA ychB FALSE 0.171 151.000 0.053 1.000 N NA
 363842 363843 S1295 S1296 ychB hemM TRUE 0.945 0.000 0.157 1.000 N NA
 363844 363845 S1297 S1298 hemA prfA TRUE 0.759 42.000 0.171 0.043 N NA
 363845 363846 S1298 S1299 prfA hemK TRUE 0.997 0.000 0.229 0.043 Y NA
 363846 363847 S1299 S1300 hemK   TRUE 0.941 -3.000 0.109 NA   NA
 363847 363848 S1300 S1301   ychA TRUE 0.955 4.000 0.195 NA   NA
 363848 363849 S1301 S1302 ychA kdsA TRUE 0.527 36.000 0.089 1.000   NA
 363851 363852 S1304 S1305 chaB chaC FALSE 0.380 137.000 0.140 NA   NA
 363855 363856 S1308 S1309 narL narX TRUE 0.999 -7.000 0.521 0.011 Y NA
 363857 363858 S1310 S1311 narK narG FALSE 0.011 393.000 0.000 1.000 N NA
 363858 363859 S1311 S1312 narG narH TRUE 0.999 -3.000 0.471 0.001 Y NA
 363859 363860 S1312 S1313 narH narJ TRUE 0.999 -3.000 0.588 0.003 Y NA
 363860 363861 S1313 S1314 narJ narI TRUE 0.999 0.000 0.500 0.003 Y NA
 363861 2179112 S1314 S1315 narI   FALSE 0.126 183.000 0.000 NA   NA
 2179113 400200 S1316 S1317 tpr tyrT FALSE 0.057 237.000 0.000 NA   NA
 400200 363862 S1317 S1318 tyrT purU FALSE 0.171 160.000 0.000 NA   NA
 363862 363863 S1318 S1319 purU ychJ TRUE 0.591 50.000 0.200 NA   NA
 363864 363865 S1320 S1321 ychK hnr FALSE 0.225 92.000 0.048 1.000   NA
 363865 363866 S1321 S1322 hnr galU FALSE 0.287 202.000 0.235 1.000 N NA
 363869 363870 S1325 S1326   adhE FALSE 0.181 126.000 0.000 1.000 N NA
 363872 363873 S1328 S1329     TRUE 0.992 -81.000 0.000 NA Y NA
 363874 363875 S1330 S1331 oppA oppB TRUE 0.860 86.000 0.151 0.050 Y NA
 363875 363876 S1331 S1332 oppB oppC TRUE 0.997 15.000 0.870 0.050 Y NA
 363876 363877 S1332 S1333 oppC oppD TRUE 0.993 12.000 0.554 1.000 Y NA
 363877 363878 S1333 S1334 oppD oppF TRUE 0.999 -3.000 0.420 0.002 Y NA
 363879 363880 S1335 S1336   cls TRUE 0.735 35.000 0.231 NA   NA
 363880 363881 S1336 S1337 cls kch FALSE 0.013 371.000 0.000 1.000 N NA
 363882 363883 S1338 S1339     TRUE 0.806 141.000 0.182 1.000 Y NA
 363886 363887 S1342 S1343 yciA yciB FALSE 0.364 105.000 0.167 NA N NA
 363887 363888 S1343 S1344 yciB yciC TRUE 0.487 30.000 0.061 NA   NA
 363890 363891 S1346 S1347 yciE yciF TRUE 0.770 46.000 0.115 0.001   NA
 363891 363892 S1347 S1348 yciF yciG FALSE 0.201 86.000 0.000 NA   NA
 363892 363893 S1348 S1349 yciG trpA FALSE 0.024 323.000 0.000 NA   NA
 363893 363894 S1349 S1350 trpA trpB TRUE 0.999 0.000 0.947 0.001 Y NA
 363894 363895 S1350 S1351 trpB trpC TRUE 0.993 12.000 0.221 0.001 Y NA
 363895 363896 S1351 S1352 trpC trpD TRUE 0.994 1.000 0.293 1.000 Y NA
 363896 363897 S1352 S1353 trpD trpE TRUE 0.993 0.000 0.010 0.001 Y NA
 363897 363898 S1353 S4805 trpE trpL FALSE 0.150 92.000 0.023 NA   NA
 363899 363900 S1354 S1355 yciV yciO TRUE 0.986 -39.000 0.281 NA   NA
 363900 363901 S1355 S1356 yciO yciL TRUE 0.686 101.000 0.075 NA Y NA
 363902 363903 S1357 S1358 btuR yciK TRUE 0.881 -3.000 0.050 1.000 N NA
 363906 363907 S1361 S1362 topA cysB FALSE 0.037 210.000 0.008 1.000 N NA
 363907 363908 S1362 S1363 cysB acnA FALSE 0.003 1002.000 0.000 1.000 N NA
 363910 363911 S1365 S1366 pgpB yciS FALSE 0.361 149.000 0.143 NA   NA
 363911 363912 S1366 S1367 yciS yciM TRUE 0.986 7.000 0.576 NA   NA
 363912 363913 S1367 S1368 yciM pyrF FALSE 0.177 193.000 0.125 1.000 N NA
 363913 363914 S1368 S1369 pyrF yciH TRUE 0.874 -3.000 0.045 1.000 N NA
 363915 363916 S1370 S1371 osmB   FALSE 0.040 269.000 0.000 NA   NA
 363916 2179114 S1371 S1372   yciR FALSE 0.012 411.000 0.000 NA   NA
 2179114 363917 S1372 S1373 yciR rnb FALSE 0.059 235.000 0.000 NA   NA
 363917 363918 S1373 S1374 rnb yciW FALSE 0.313 68.000 0.105 NA   NA
 363918 363919 S1374 S1375 yciW fabI FALSE 0.231 144.000 0.057 NA   NA
 363919 363920 S1375 S1376 fabI ycjD FALSE 0.020 368.000 0.000 1.000   NA
 363920 363921 S1376 S1377 ycjD sapF FALSE 0.235 68.000 0.000 1.000   NA
 363921 363922 S1377 S1378 sapF sapD TRUE 0.999 2.000 0.684 0.015 Y NA
 363922 363923 S1378 S1379 sapD sapC TRUE 0.998 0.000 0.667 1.000 Y NA
 363923 363924 S1379 S1380 sapC sapB TRUE 0.998 -13.000 0.284 0.050 Y NA
 363924 363925 S1380 S1381 sapB sapA TRUE 0.988 -3.000 0.264 0.050 N NA
 363925 2179115 S1381 S1382 sapA ymjA FALSE 0.027 313.000 0.000 NA   NA
 2179115 363926 S1382 S1383 ymjA ycjJ FALSE 0.061 232.000 0.000 NA   NA
 363926 363927 S1383 S1384 ycjJ   FALSE 0.188 303.000 0.000 1.000 Y NA
 363928 363929 S1385 S1386 ycjL ycjC TRUE 0.512 27.000 0.046 1.000   NA
 363929 363930 S1386 S1387 ycjC aldH FALSE 0.147 150.000 0.040 1.000 N NA
 363930 363931 S1387 S1388 aldH ordL TRUE 0.993 2.000 0.500 0.027 N NA
 363931 363932 S1388 S1389 ordL goaG TRUE 0.857 38.000 0.100 1.000 Y NA
 363934 363935 S1391 S1392 pspA pspB TRUE 0.862 54.000 0.739 NA   NA
 363935 363936 S1392 S1393 pspB pspC TRUE 0.994 0.000 0.913 NA   NA
 363936 363937 S1393 S1394 pspC pspD TRUE 0.933 9.000 0.167 NA   NA
 363937 363938 S1394 S1395 pspD pspE TRUE 0.514 43.000 0.133 NA   NA
 363938 2179116 S1395 S1396 pspE ycjM FALSE 0.119 185.000 0.000 NA   NA
 2179116 363939 S1396 S1397 ycjM   FALSE 0.270 53.000 0.000 NA   NA
 363939 363940 S1397 S1398     TRUE 0.992 -81.000 0.000 NA Y NA
 363940 2179117 S1398 S1399     FALSE 0.006 613.000 0.000 NA   NA
 2179117 363941 S1399 S1400   ycjO TRUE 0.557 21.000 0.000 NA   NA
 363941 363942 S1400 S1401 ycjO ycjP TRUE 0.999 -13.000 0.805 0.050 Y NA
 363942 363943 S1401 S1402 ycjP ycjQ TRUE 0.713 31.000 0.205 1.000 N NA
 363943 2179118 S1402 S1403 ycjQ   TRUE 0.605 18.000 0.000 NA   NA
 2179118 363944 S1403 S1404   ycjS TRUE 0.827 10.000 0.000 NA   NA
 363944 363945 S1404 S1405 ycjS ycjT TRUE 0.913 -3.000 0.000 1.000   NA
 363945 363946 S1405 S1406 ycjT ycjU TRUE 0.913 -3.000 0.000 1.000   NA
 363946 363947 S1406 S1407 ycjU ycjV TRUE 0.809 14.000 0.103 1.000   NA
 363947 2179119 S1407 S1408 ycjV ompG FALSE 0.180 156.000 0.000 NA   NA
 363949 363950 S1410 S1411 ycjX ycjF TRUE 0.994 -3.000 0.791 NA   NA
 363950 363951 S1411 S1412 ycjF tyrR FALSE 0.355 148.000 0.137 NA   NA
 363954 363955 S1415 S1416 ycjI   FALSE 0.027 291.000 0.000 1.000 N NA
 363955 2179120 S1416 S1420   ycjY TRUE 0.605 18.000 0.000 NA   NA
 363956 363957 S1418 S1421   ycjZ FALSE 0.004 1544.000 0.000 1.000   NA
 363958 363959 S1422 S1423     TRUE 0.806 141.000 0.182 1.000 Y NA
 363963 363964 S1427 S1428     TRUE 0.962 0.000 0.000 0.072   NA
 363964 363965 S1428 S1429     TRUE 0.901 0.000 0.000 1.000   NA
 363966 2179121 S1431 S1432   ynaJ FALSE 0.011 414.000 0.000 NA   NA
 363967 363968 S1433 S1434 ydaA fnr TRUE 0.927 152.000 0.619 1.000 Y NA
 363968 363969 S1434 S1435 fnr ogt FALSE 0.086 195.000 0.000 1.000 N NA
 363969 2179122 S1435 S1436 ogt ydaH TRUE 0.796 11.000 0.000 NA   NA
 2179122 363970 S1436 S1430 ydaH   FALSE 0.014 390.000 0.000 NA   NA
 363972 363973 S1440 S1441     FALSE 0.218 108.000 0.000 NA   NA
 363974 2179123 S1443 S1444   ydaL FALSE 0.003 1705.000 0.000 NA   NA
 363975 363976 S1446 S1447   dbpA FALSE 0.007 478.000 0.000 1.000 N NA
 363977 363978 S1448 S1449 ydaO ynaF FALSE 0.096 176.000 0.000 NA N NA
 363978 2179125 S1449 S1450 ynaF   FALSE 0.021 341.000 0.000 NA   NA
 2179125 363979 S1450 S1451   ydbK FALSE 0.017 367.000 0.000 NA   NA
 363979 2179126 S1451 S1452 ydbK   FALSE 0.007 537.000 0.000 NA   NA
 2179126 363980 S1452 S1453     TRUE 0.876 2.000 0.000 NA   NA
 363980 363981 S1453 S1454     TRUE 0.992 -81.000 0.000 NA Y NA
 363982 363983 S1456 S1457 ydbL ynbE TRUE 0.990 5.000 0.726 NA   NA
 363983 363984 S1457 S1458 ynbE ydbH TRUE 0.918 -3.000 0.068 NA   NA
 363985 2179128 S1459 S1460 ldhA hslJ FALSE 0.219 111.000 0.000 NA   NA
 363986 363987 S1461 S1462     TRUE 0.992 -81.000 0.000 NA Y NA
 363988 363989 S1463 S1464 ydbD   FALSE 0.149 171.000 0.000 NA   NA
 363989 363990 S1464 S1465     TRUE 0.677 152.000 0.179 0.003   NA
 363990 363991 S1465 S1466     TRUE 0.642 16.000 0.000 NA   NA
 363991 2179129 S1466 S1467   ynbD TRUE 0.688 14.000 0.000 NA   NA
 363992 363993 S1468 S1469     TRUE 0.806 141.000 0.182 1.000 Y NA
 363993 363994 S1469 S1471   acpD FALSE 0.004 763.000 0.000 1.000 N NA
 2179130 363997 S1474 S1475 ydcF aldA FALSE 0.101 197.000 0.000 NA   NA
 363998 363999 S1478 S1479 cybB ydcA FALSE 0.052 245.000 0.000 NA   NA
 364000 364001 S1482 S1483     TRUE 0.998 -3.000 0.571 1.000 Y NA
 364004 364005 S1487 S1488   ydcG FALSE 0.067 225.000 0.000 NA   NA
 364007 364008 S1490 S1491 ydcH rimL FALSE 0.170 63.000 0.026 NA   NA
 364010 364011 S1493 S1494 tehA tehB TRUE 0.966 -3.000 0.175 1.000   NA
 364011 364012 S1494 S1495 tehB   FALSE 0.043 303.000 0.088 NA   NA
 364012 2179135 S1495 S1496     FALSE 0.006 592.000 0.000 NA   NA
 364014 364015 S1498 S1499     FALSE 0.007 568.000 0.000 NA   NA
 364015 364016 S1499 S1500     TRUE 0.992 -81.000 0.000 NA Y NA
 364016 2179136 S1500 S1501   pphA FALSE 0.037 277.000 0.000 NA   NA
 2179136 364017 S1501 S1502 pphA   FALSE 0.223 62.000 0.000 NA   NA
 364017 364018 S1502 S1503     TRUE 0.806 141.000 0.182 1.000 Y NA
 364019 364020 S1504 S1505     TRUE 0.899 21.000 0.353 NA   NA
 364020 2179137 S1505 S1506   yebU FALSE 0.215 118.000 0.000 NA   NA
 2179137 2179138 S1506 S1507 yebU   FALSE 0.202 74.000 0.000 NA   NA
 2179138 364021 S1507 S1508     TRUE 0.932 -31.000 0.000 NA   NA
 364022 364023 S1509 S1510   yebJ FALSE 0.007 676.000 0.081 NA   NA
 364023 364024 S1510 S1511 yebJ prc TRUE 0.885 20.000 0.304 NA   NA
 364024 364025 S1511 S1512 prc htpX FALSE 0.255 195.000 0.042 0.019 N NA
 364027 364028 S1514 S1515     FALSE 0.007 541.000 0.000 NA   NA
 364028 364029 S1515 S1516     TRUE 0.728 75.000 0.500 NA   NA
 364029 364030 S1516 S1517     FALSE 0.005 670.000 0.000 NA   NA
 364030 364031 S1517 S1518   cspC TRUE 0.906 13.000 0.214 NA   NA
 364031 364032 S1518 S1519 cspC yebH FALSE 0.165 166.000 0.038 1.000   NA
 364033 364034 S1520 S1521     FALSE 0.012 409.000 0.000 NA   NA
 364034 364035 S1521 S1522     TRUE 0.992 -81.000 0.000 NA Y NA
 364035 364036 S1522 S1523     TRUE 0.456 29.000 0.000 NA   NA
 364036 364037 S1523 S1524   manZ TRUE 0.861 55.000 0.755 NA   NA
 364037 364038 S1524 S1525 manZ manY TRUE 0.999 4.000 0.939 0.011 Y NA
 364038 364039 S1525 S1526 manY manX TRUE 0.829 63.000 0.000 0.011 Y NA
 364041 364042 S1528 S1529   sdaA TRUE 0.648 131.000 0.389 NA N NA
 364042 364043 S1529 S1530 sdaA yeaB TRUE 0.558 184.000 0.409 1.000   NA
 364043 364044 S1530 S1531 yeaB pabB TRUE 0.929 4.000 0.116 1.000   NA
 364046 364047 S1533 S1534     FALSE 0.018 362.000 0.000 NA   NA
 364048 364049 S1535 S1536   yeaZ FALSE 0.278 58.000 0.082 1.000 N NA
 364049 364050 S1536 S1537 yeaZ   FALSE 0.232 40.000 0.024 1.000 N NA
 364050 364051 S1537 S1538   fadD FALSE 0.406 140.000 0.169 1.000 N NA
 364051 364052 S1538 S1539 fadD rnd FALSE 0.288 82.000 0.115 1.000 N NA
 364053 2179139 S1540 S1541 yeaX yeaW FALSE 0.252 56.000 0.000 NA   NA
 2179139 364054 S1541 S1542 yeaW   FALSE 0.022 330.000 0.000 NA   NA
 364055 364056 S1543 S1544     TRUE 0.806 141.000 0.182 1.000 Y NA
 364059 364060 S1547 S1548 yeaO yeaN FALSE 0.115 153.000 0.007 NA   NA
 364063 2179141 S1552 S1553 yeaK yeaJ FALSE 0.219 109.000 0.000 NA   NA
 364066 364067 S1556 S1557 yeaF   FALSE 0.236 90.000 0.067 NA   NA
 364068 364069 S1558 S1559 yeaD gapA TRUE 0.768 84.000 0.154 1.000 Y NA
 364070 364071 S1560 S1561 yeaA   TRUE 0.667 42.000 0.216 NA   NA
 364071 364072 S1561 S1562     FALSE 0.016 370.000 0.000 NA   NA
 364072 364073 S1562 S1563     TRUE 0.791 27.000 0.250 1.000 N NA
 364073 2179142 S1563 S1564   ydjJ TRUE 0.623 17.000 0.000 NA   NA
 2179142 364074 S1564 S1565 ydjJ   TRUE 0.557 21.000 0.000 NA   NA
 364074 364075 S1565 S1566     TRUE 0.994 5.000 0.368 NA Y NA
 364075 364076 S1566 S1567     TRUE 0.587 55.000 0.269 NA N NA
 364076 364077 S1567 S1568     TRUE 0.556 137.000 0.269 1.000 N NA
 364077 364078 S1568 S1569   ydjE TRUE 0.757 118.000 0.125 1.000 Y NA
 364079 364080 S1570 S1571 ydjB ansA TRUE 0.733 11.000 0.040 1.000 N NA
 364080 364081 S1571 S1572 ansA sppA FALSE 0.228 167.000 0.113 1.000 N NA
 364082 364083 S1573 S1574 ydjA selD FALSE 0.148 117.000 0.033 1.000 N NA
 364083 364084 S1574 S1575 selD topB TRUE 0.811 5.000 0.041 1.000 N NA
 364084 2179143 S1575 S1576 topB   FALSE 0.202 73.000 0.000 NA   NA
 364085 364086 S1578 S1579     TRUE 0.991 -42.000 0.000 1.000 Y NA
 364086 364087 S1579 S1580     FALSE 0.014 395.000 0.000 NA   NA
 2179145 364090 S1583 S1584     FALSE 0.279 52.000 0.000 NA   NA
 364090 2179146 S1584 S1585     TRUE 0.886 0.000 0.000 NA   NA
 2179146 2179147 S1585 S1589     TRUE 0.605 18.000 0.000 NA   NA
 364092 364093 S1590 S1591 ynjA ydjZ TRUE 0.921 0.000 0.087 NA   NA
 364093 364094 S1591 S1592 ydjZ ydjY TRUE 0.813 18.000 0.174 NA   NA
 364094 364095 S1592 S1593 ydjY ydjX TRUE 0.966 -157.000 0.083 NA   NA
 364095 364096 S1593 S1594 ydjX xthA FALSE 0.106 167.000 0.016 NA   NA
 2179148 364097 S1595 S1596 cstC   TRUE 0.886 0.000 0.000 NA   NA
 364097 364098 S1596 S1597     TRUE 0.959 -3.000 0.179 1.000 N NA
 364098 2179149 S1597 S1598     TRUE 0.899 -3.000 0.000 NA   NA
 2179149 364099 S1598 S1599   ydjS TRUE 0.919 -7.000 0.000 NA   NA
 364099 364100 S1599 S1600 ydjS spy FALSE 0.015 330.000 0.000 NA N NA
 364100 364101 S1600 S1601 spy   FALSE 0.071 203.000 0.028 NA   NA
 364102 364103 S1602 S1603   nadE FALSE 0.028 230.000 0.010 1.000 N NA
 364104 364105 S1604 S1605 osmE celA FALSE 0.035 299.000 0.000 1.000   NA
 364105 2179150 S1605 S1606 celA celB FALSE 0.018 363.000 0.000 NA   NA
 2179150 364106 S1606 S1607 celB celC FALSE 0.235 59.000 0.000 NA   NA
 364106 2179151 S1607 S1608 celC celD TRUE 0.796 11.000 0.000 NA   NA
 364107 364108 S1609 S1610     TRUE 0.996 -81.000 0.000 0.100 Y NA
 364109 364110 S1611 S1612 celF ydjC TRUE 0.981 13.000 0.429 0.016   NA
 364112 2179152 S1614 S1615     FALSE 0.037 277.000 0.000 NA   NA
 364113 364114 S1616 S1617     TRUE 0.996 -81.000 0.000 0.100 Y NA
 364114 2179153 S1617 S1618     FALSE 0.204 147.000 0.000 NA   NA
 2179153 364115 S1618 S1619     FALSE 0.217 133.000 0.000 NA   NA
 364115 364116 S1619 S1620   yniC FALSE 0.203 163.000 0.068 NA   NA
 364118 364119 S1622 S1623     FALSE 0.215 106.000 0.000 NA   NA
 364119 364120 S1623 S1624   pfkB FALSE 0.208 101.000 0.000 NA   NA
 2179154 364122 S1626 S1627     TRUE 0.933 -36.000 0.000 NA   NA
 364122 364123 S1627 S1628     TRUE 0.996 -81.000 0.000 0.099 Y NA
 364123 2179155 S1628 S1629     FALSE 0.192 151.000 0.000 NA   NA
 364124 364125 S1630 S1631 thrS infC TRUE 0.816 112.000 0.186 1.000 Y NA
 364125 364126 S1631 S1632 infC rpmI TRUE 0.937 97.000 0.652 1.000 Y NA
 364126 364127 S1632 S1633 rpmI rplT TRUE 0.984 53.000 0.928 0.012 Y NA
 364127 364128 S1633 S4806 rplT pheM FALSE 0.214 123.000 0.000 NA   NA
 364128 364129 S4806 S1634 pheM pheS FALSE 0.036 283.000 0.000 NA   NA
 364129 364130 S1634 S1635 pheS pheT TRUE 0.996 15.000 0.574 0.001 Y NA
 364130 364131 S1635 S1636 pheT himA TRUE 0.951 5.000 0.208 1.000 N NA
 364131 364132 S1636 S1637 himA btuC FALSE 0.124 101.000 0.023 1.000 N NA
 364132 364133 S1637 S1638 btuC btuE FALSE 0.260 63.000 0.084 1.000 N NA
 364133 364134 S1638 S1639 btuE btuD TRUE 0.863 0.000 0.000 1.000 N NA
 364134 364135 S1639 S1640 btuD nlpC FALSE 0.142 78.000 0.000 NA N NA
 364135 364136 S1640 S1641 nlpC   FALSE 0.034 247.000 0.000 NA N NA
 364136 364137 S1641 S1642     FALSE 0.177 64.000 0.031 NA   NA
 364138 364139 S1643 S1644 ydiE aroH FALSE 0.168 132.000 0.054 NA N NA
 364139 364140 S1644 S1645 aroH ydiA FALSE 0.384 157.000 0.165 1.000   NA
 364142 364143 S1647 S1648 ydiD ydiT TRUE 0.887 3.000 0.080 1.000 N NA
 364143 364144 S1648 S1649 ydiT ydiS TRUE 0.998 -3.000 0.400 0.047 Y NA
 364144 364145 S1649 S1650 ydiS ydiR TRUE 0.982 56.000 1.000 0.047 Y NA
 364145 364146 S1650 S1651 ydiR ydiQ TRUE 0.996 20.000 1.000 0.016 Y NA
 364147 364148 S1652 S1653     FALSE 0.012 436.000 0.000 1.000   NA
 364149 364150 S1654 S1655     FALSE 0.207 68.000 0.000 NA   NA
 364150 364151 S1655 S1656     FALSE 0.050 248.000 0.000 NA   NA
 364151 2179156 S1656 S1657     FALSE 0.022 334.000 0.000 NA   NA
 364152 364153 S1658 S1659     TRUE 0.996 -81.000 0.000 0.099 Y NA
 364153 364154 S1659 S1660     TRUE 0.424 208.000 0.000 1.000 Y NA
 364155 364156 S1661 S4818     FALSE 0.028 308.000 0.000 NA   NA
 364156 400199 S4818 S1662   tRNA-Arg FALSE 0.003 1492.000 0.000 NA   NA
 400199 400198 S1662 S1663 tRNA-Arg tRNA-Met FALSE 0.210 102.000 0.000 NA   NA
 400198 2179157 S1663 S1664 tRNA-Met   FALSE 0.208 145.000 0.000 NA   NA
 2179157 364157 S1664 S1665   rus TRUE 0.665 15.000 0.000 NA   NA
 364157 2179158 S1665 S1666 rus   TRUE 0.717 13.000 0.000 NA   NA
 2179158 364158 S1666 S1667   rem FALSE 0.028 308.000 0.000 NA   NA
 364158 364159 S1667 S1668 rem relF FALSE 0.070 221.000 0.000 NA   NA
 364159 364160 S1668 S1669 relF relE FALSE 0.203 72.000 0.000 NA   NA
 364160 364161 S1669 S1670 relE relB TRUE 0.836 0.000 0.000 NA N NA
 364161 364162 S1670 S1671 relB b4285 TRUE 0.683 60.000 0.000 NA Y NA
 364162 364163 S1671 S1673 b4285   FALSE 0.307 240.000 0.000 1.000 Y NA
 364164 364165 S1675 S1676     TRUE 0.806 141.000 0.182 1.000 Y NA
 2179160 364166 S1677 S1678   ydfI FALSE 0.199 89.000 0.000 NA   NA
 364167 364168 S1679 S1680   ydfH FALSE 0.136 178.000 0.000 NA   NA
 364168 364169 S1680 S1681 ydfH ydfG FALSE 0.227 89.000 0.000 1.000   NA
 364172 364173 S1684 S1685 ydeI   FALSE 0.248 57.000 0.000 NA   NA
 364173 364174 S1685 S1686     TRUE 0.806 141.000 0.182 1.000 Y NA
 364177 364178 S1689 S1690 marB marA TRUE 0.428 32.000 0.000 NA   NA
 364178 364179 S1690 S1691 marA marR TRUE 0.993 20.000 0.667 0.039 Y NA
 364181 364182 S1693 S1694 ydeA   FALSE 0.195 150.000 0.000 NA   NA
 2179161 364183 S1695 S1696   yneH FALSE 0.216 64.000 0.000 NA   NA
 364183 364184 S1696 S1697 yneH   TRUE 0.869 0.000 0.037 NA   NA
 364184 364185 S1697 S1698     FALSE 0.009 625.000 0.098 NA   NA
 364185 364186 S1698 S1699   uxaB FALSE 0.054 227.000 0.000 1.000 N NA
 364186 364187 S1699 S1701 uxaB   FALSE 0.007 1843.000 0.143 NA   NA
 364188 364189 S1702 S1703     FALSE 0.396 40.000 0.000 1.000   NA
 364189 364190 S1703 S1704     TRUE 0.557 24.000 0.000 1.000   NA
 364190 364191 S1704 S1705     TRUE 0.672 13.000 0.000 1.000 N NA
 364191 364192 S1705 S1706     TRUE 0.991 -42.000 0.000 1.000 Y NA
 364192 2179162 S1706 S1707   ydeV FALSE 0.138 177.000 0.000 NA   NA
 2179162 364193 S1707 S1708 ydeV ydeW FALSE 0.202 79.000 0.000 NA   NA
 364194 364195 S1709 S1710   ydeY TRUE 0.999 -6.000 0.818 1.000 Y NA
 364195 364196 S1710 S1711 ydeY ydeZ TRUE 0.999 0.000 0.788 0.048 Y NA
 364196 2179163 S1711 S1712 ydeZ   TRUE 0.757 12.000 0.000 NA   NA
 2179163 2179164 S1712 S1713   yneB TRUE 0.477 27.000 0.000 NA   NA
 2179164 364197 S1713 S1714 yneB   FALSE 0.344 42.000 0.000 NA   NA
 364197 364198 S1714 S1715     TRUE 0.991 -42.000 0.000 1.000 Y NA
 364199 364200 S1716 S1717     TRUE 0.720 57.000 0.000 1.000 Y NA
 364200 364201 S1717 S1718   rspA FALSE 0.170 77.000 0.000 1.000 N NA
 364201 364202 S1718 S1719 rspA   FALSE 0.074 206.000 0.020 1.000   NA
 364203 2179165 S1720 S1721   speG FALSE 0.119 185.000 0.000 NA   NA
 364205 2179166 S1723 S1724     FALSE 0.098 199.000 0.000 NA   NA
 364206 364207 S1727 S1728     FALSE 0.200 87.000 0.000 NA   NA
 364207 364208 S1728 S1730     FALSE 0.024 321.000 0.000 NA   NA
 364208 364209 S1730 S1731     TRUE 0.923 -10.000 0.000 NA   NA
 364209 364210 S1731 S1732     FALSE 0.010 431.000 0.000 NA   NA
 364210 364211 S1732 S1736     FALSE 0.004 969.000 0.000 NA   NA
 364211 364212 S1736 S1738     FALSE 0.307 240.000 0.000 1.000 Y NA
 364212 364213 S1738 S1739     FALSE 0.204 70.000 0.000 NA   NA
 2179167 364214 S1741 S1742     FALSE 0.019 355.000 0.000 NA   NA
 364214 364215 S1742 S1743     TRUE 0.980 2.000 0.333 1.000   NA
 364215 364216 S1743 S1744     TRUE 0.529 43.000 0.125 1.000   NA
 364216 364217 S1744 S1745     FALSE 0.156 195.000 0.079 1.000   NA
 364218 364219 S1746 S1747   mlc TRUE 0.704 125.000 0.455 1.000 N NA
 364219 364220 S1747 S1748 mlc ynfL TRUE 0.904 135.000 0.408 1.000 Y NA
 2179168 364221 S1749 S1750 ynfM asr FALSE 0.011 424.000 0.000 NA   NA
 364221 364222 S1750 S1751 asr   FALSE 0.038 276.000 0.000 NA   NA
 364223 364224 S1752 S1753     TRUE 0.999 -13.000 0.869 0.074 Y NA
 364226 364227 S1755 S1756 pntB pntA TRUE 0.998 11.000 0.745 0.001 Y NA
 364228 364229 S1757 S1758     FALSE 0.232 186.000 0.143 NA   NA
 364229 364230 S1758 S1759   ydgB TRUE 0.543 37.000 0.140 1.000 N NA
 364232 364233 S1761 S1762 rstA   FALSE 0.009 498.000 0.000 1.000   NA
 364233 364234 S1762 S1763   rstB FALSE 0.318 179.000 0.000 0.085   NA
 364234 364235 S1763 S1764 rstB tus TRUE 0.492 76.000 0.200 1.000   NA
 364236 364237 S1765 S1766 fumC fumA TRUE 0.849 143.000 0.000 0.001 Y NA
 364238 364239 S1767 S1768 manA ydgA TRUE 0.827 101.000 0.778 NA   NA
 364240 2179169 S1769 S1770 uidC uidB FALSE 0.364 39.000 0.000 NA   NA
 2179169 364241 S1770 S1771 uidB uidA TRUE 0.899 -3.000 0.000 NA   NA
 364241 364242 S1771 S1772 uidA uidR FALSE 0.012 388.000 0.000 1.000 N NA
 364242 2179170 S1772 S1776 uidR hdhA FALSE 0.064 229.000 0.000 NA   NA
 2179170 364243 S1776 S1774 hdhA   TRUE 0.952 -679.000 0.000 NA   NA
 364243 364244 S1774 S1775     TRUE 0.996 -81.000 0.000 0.098 Y NA
 364244 364245 S1775 S1777   malI FALSE 0.004 783.000 0.000 1.000 N NA
 364246 364247 S1778 S1779 malX malY TRUE 0.981 10.000 0.531 1.000 N NA
 364247 364248 S1779 S1780 malY add FALSE 0.330 104.000 0.132 1.000 N NA
 364250 364251 S1782 S1783     FALSE 0.327 86.000 0.120 NA   NA
 364251 364252 S1783 S1784     FALSE 0.374 77.000 0.148 NA   NA
 364252 364253 S1784 S1785     TRUE 0.999 0.000 0.564 0.046 Y NA
 364253 364254 S1785 S1786     TRUE 0.999 -7.000 0.537 0.016 Y NA
 364254 364255 S1786 S1787   ydgO TRUE 0.999 1.000 0.814 0.046 Y NA
 364255 364256 S1787 S1788 ydgO   TRUE 0.999 4.000 0.924 0.046 Y NA
 364256 364257 S1788 S1789   ydgQ TRUE 0.999 4.000 0.908 0.046 Y NA
 364257 364258 S1789 S1790 ydgQ nth TRUE 0.923 0.000 0.109 1.000 N NA
 364258 364259 S1790 S1791 nth ydgR FALSE 0.005 611.000 0.000 1.000 N NA
 364259 364260 S1791 S1792 ydgR gst TRUE 0.631 106.000 0.344 1.000 N NA
 364261 364262 S1793 S1794 pdxY tyrS FALSE 0.183 59.000 0.041 1.000 N NA
 364262 364263 S1794 S1795 tyrS pdxH FALSE 0.196 129.000 0.054 1.000 N NA
 364263 364264 S1795 S1796 pdxH ydhA FALSE 0.231 59.000 0.034 1.000   NA
 364264 364265 S1796 S1797 ydhA   TRUE 0.582 22.000 0.000 1.000   NA
 364265 364266 S1797 S1798     TRUE 0.991 -42.000 0.000 1.000 Y NA
 364266 364267 S1798 S1799     FALSE 0.027 265.000 0.000 NA N NA
 364270 364271 S1802 S1803     TRUE 0.989 -6.000 0.412 NA   NA
 364271 2179171 S1803 S1804     TRUE 0.886 0.000 0.000 NA   NA
 364272 364273 S1805 S1806 sodC   FALSE 0.206 66.000 0.033 1.000   NA
 364273 364274 S1806 S1808     FALSE 0.290 49.000 0.045 NA   NA
 364275 364276 S1807 S1809   nemA TRUE 0.805 37.000 0.362 1.000 N NA
 364276 364277 S1809 S1810 nemA gloA FALSE 0.190 81.000 0.057 1.000 N NA
 364277 364278 S1810 S1811 gloA rnt FALSE 0.333 103.000 0.136 1.000 N NA
 364278 2179172 S1811 S1812 rnt lhr FALSE 0.199 93.000 0.000 NA   NA
 364279 364280 S1813 S1814   ydhD FALSE 0.004 607.000 0.000 NA N NA
 364281 364282 S1815 S1816 ydhO sodB FALSE 0.114 128.000 0.015 1.000 N NA
 364286 364287 S1820 S1821 ydhC cfa FALSE 0.027 291.000 0.000 1.000 N NA
 400130 400131 S1825 S1826 valV valW TRUE 0.856 5.000 0.000 NA   NA
 400131 364291 S1826 S1827 valW   FALSE 0.218 108.000 0.000 NA   NA
 364291 2179173 S1827 S1828     FALSE 0.215 126.000 0.000 NA   NA
 364292 364293 S1829 S1830   ydhU TRUE 0.962 4.000 0.222 NA   NA
 364293 364294 S1830 S1831 ydhU   TRUE 0.998 -3.000 0.444 0.046 Y NA
 364294 364295 S1831 S1832     TRUE 0.916 13.000 0.235 NA   NA
 364295 2179174 S1832 S1833     TRUE 0.717 13.000 0.000 NA   NA
 2179174 364296 S1833 S1834     FALSE 0.031 293.000 0.000 NA   NA
 364296 364297 S1834 S1835     FALSE 0.009 456.000 0.000 NA   NA
 364298 364299 S1836 S1837     TRUE 0.996 -81.000 0.000 0.098 Y NA
 364299 364300 S1837 S1838   pykF FALSE 0.006 549.000 0.000 1.000 N NA
 364300 364301 S1838 S1839 pykF lpp FALSE 0.022 311.000 0.000 1.000 N NA
 364302 364303 S1840 S1841 ynhG ynhA FALSE 0.240 149.000 0.069 NA   NA
 364303 364304 S1841 S1842 ynhA   TRUE 0.890 13.000 0.183 NA   NA
 364304 364305 S1842 S1843   ynhC TRUE 0.964 -3.000 0.193 1.000 N NA
 364305 364306 S1843 S1844 ynhC ynhD TRUE 0.998 -25.000 0.482 1.000 Y NA
 364306 364307 S1844 S1845 ynhD ynhE TRUE 0.995 10.000 0.466 1.000 Y NA
 364307 364308 S1845 S1846 ynhE ydiC TRUE 0.826 9.000 0.041 NA   NA
 364308 364309 S1846 S1847 ydiC   FALSE 0.007 548.000 0.000 NA   NA
 364309 364310 S1847 S1848     TRUE 0.532 19.000 0.032 NA   NA
 364310 364311 S1848 S1849   ydiJ TRUE 0.934 -3.000 0.129 NA N NA
 364312 364313 S1850 S1851     FALSE 0.011 429.000 0.000 NA   NA
 364313 364314 S1851 S1852     FALSE 0.250 160.000 0.095 NA   NA
 364314 364315 S1852 S1853     FALSE 0.100 294.000 0.000 0.048   NA
 364315 364316 S1853 S1854   ydiB TRUE 0.789 12.000 0.082 1.000 N NA
 364316 364317 S1854 S1855 ydiB aroD TRUE 0.893 31.000 0.113 1.000 Y NA
 364318 364319 S1857 S1856     TRUE 0.996 -81.000 0.000 0.098 Y NA
 2179175 364320 S1858 S1859     FALSE 0.279 52.000 0.000 NA   NA
 364320 2179176 S1859 S1860   yddA FALSE 0.033 291.000 0.000 NA   NA
 2179176 364321 S1860 S1861 yddA yddB FALSE 0.005 662.000 0.000 NA   NA
 364322 364323 S1862 S1863     TRUE 0.996 -81.000 0.000 0.097 Y NA
 2179177 364324 S1864 S1865 pqqL   FALSE 0.407 34.000 0.000 NA   NA
 364324 364325 S1865 S1866     TRUE 0.996 -81.000 0.000 0.097 Y NA
 364325 364326 S1866 S1867   gadB FALSE 0.007 478.000 0.000 1.000 N NA
 364326 364327 S1867 S1868 gadB xasA TRUE 0.693 156.000 0.103 1.000 Y NA
 364327 364328 S1868 S1869 xasA   FALSE 0.245 131.000 0.000 1.000   NA
 364328 2179178 S1869 S1870     FALSE 0.013 398.000 0.000 NA   NA
 2179178 2179179 S1870 S1871     TRUE 0.899 -3.000 0.000 NA   NA
 2179179 2179180 S1871 S1872     FALSE 0.045 258.000 0.000 NA   NA
 2179180 364329 S1872 S1873     TRUE 0.796 11.000 0.000 NA   NA
 364329 364330 S1873 S1874     TRUE 0.996 -3.000 0.333 1.000 Y NA
 364330 2179181 S1874 S1875     TRUE 0.919 -7.000 0.000 NA   NA
 364331 364332 S1876 S1877 osmC   FALSE 0.120 173.000 0.000 1.000 N NA
 364332 364333 S1877 S1878     TRUE 0.996 -81.000 0.000 0.097 Y NA
 364334 364335 S1879 S1880 sfcA adhP FALSE 0.246 134.000 0.000 1.000   NA
 364335 364336 S1880 S1881 adhP yddM FALSE 0.235 68.000 0.000 1.000   NA
 364337 364338 S1882 S1883 fdnI fdnH TRUE 0.999 -7.000 0.333 0.002 Y NA
 364338 364339 S1883 S1884 fdnH fdnG TRUE 0.995 13.000 0.429 0.002 Y NA
 364340 364341 S1885 S1887 yddG   FALSE 0.130 255.000 0.000 0.084   NA
 364341 364342 S1887 S1888     FALSE 0.005 759.000 0.000 1.000   NA
 364342 2179182 S1888 S1889     TRUE 0.848 7.000 0.000 NA   NA
 2179182 364343 S1889 S1890     FALSE 0.248 57.000 0.000 NA   NA
 364343 364344 S1890 S1891     TRUE 0.996 -81.000 0.000 0.097 Y NA
 364344 364345 S1891 S1892   narU FALSE 0.007 458.000 0.000 1.000 N NA
 364345 2179183 S1892 S1893 narU narZ FALSE 0.202 82.000 0.000 NA   NA
 2179183 2179184 S1893 S1894 narZ narY TRUE 0.899 -3.000 0.000 NA   NA
 2179184 364346 S1894 S1896 narY   FALSE 0.013 399.000 0.000 NA   NA
 364347 364348 S1897 S1898   yncB FALSE 0.244 141.000 0.000 1.000   NA
 364348 364349 S1898 S1899 yncB   TRUE 0.419 37.000 0.000 1.000   NA
 364349 364350 S1899 S1900     TRUE 0.991 -42.000 0.000 1.000 Y NA
 364351 364352 S1901 S1902     TRUE 0.920 -3.000 0.070 NA   NA
 364353 364354 S1903 S1904     FALSE 0.201 86.000 0.000 NA   NA
 364354 364355 S1904 S1905     FALSE 0.003 1636.000 0.000 NA   NA
 364355 364356 S1905 S1906     TRUE 0.803 22.000 0.216 1.000 N NA
 364356 2179185 S1906 S1907     TRUE 0.923 -10.000 0.000 NA   NA
 364357 364358 S1908 S1909     TRUE 0.962 0.000 0.000 0.069   NA
 364359 364360 S1910 S1911     TRUE 0.554 56.000 0.000 0.037   NA
 364360 364361 S1911 S1912     FALSE 0.049 263.000 0.000 1.000   NA
 364361 364362 S1912 S1915     FALSE 0.003 2737.000 0.000 NA   NA
 364362 2179186 S1915 S1916     TRUE 0.717 13.000 0.000 NA   NA
 2179186 364363 S1916 S1917     TRUE 0.862 4.000 0.000 NA   NA
 364364 364365 S1918 S1919 holE   FALSE 0.090 333.000 0.222 1.000   NA
 364365 364366 S1919 S1920     TRUE 0.924 24.000 0.500 1.000   NA
 364367 364368 S1921 S1922 ptrB yebE FALSE 0.125 210.000 0.092 NA   NA
 364368 364369 S1922 S1923 yebE yebF FALSE 0.017 327.000 0.028 NA   NA
 364369 2179187 S1923 S1924 yebF yebG FALSE 0.209 67.000 0.000 NA   NA
 364371 364372 S1926 S1927 eda edd TRUE 0.965 37.000 0.523 1.000 Y NA
 364372 364373 S1927 S1928 edd zwf FALSE 0.320 235.000 0.041 1.000 Y NA
 364374 364375 S1929 S1930 yebK pykA FALSE 0.145 178.000 0.071 1.000 N NA
 364376 364377 S1931 S1932 msbB yebA TRUE 0.869 120.000 0.299 1.000 Y NA
 364377 364378 S1932 S1933 yebA znuA TRUE 0.766 16.000 0.131 1.000 N NA
 364379 364380 S1934 S1935 yebM yebI TRUE 0.999 -3.000 0.755 0.074 Y NA
 364381 364382 S1936 S1937 ruvB ruvA TRUE 0.998 9.000 0.549 0.001 Y NA
 364383 364384 S1939 S1940 ruvC yebC TRUE 0.769 35.000 0.277 NA   NA
 364384 364385 S1940 S1941 yebC ntpA FALSE 0.409 29.000 0.035 NA   NA
 364385 364386 S1941 S1942 ntpA aspS FALSE 0.173 88.000 0.050 1.000 N NA
 2179189 364387 S1943 S1944 yecD   TRUE 0.953 -1570.000 0.000 NA   NA
 364387 364388 S1944 S1946     FALSE 0.005 729.000 0.000 NA   NA
 364388 364389 S1946 S1947   ipaH_4 FALSE 0.006 600.000 0.000 NA   NA
 364390 364391 S1948 S1949     TRUE 0.886 0.000 0.000 NA   NA
 364392 364393 S1950 S1952     FALSE 0.021 342.000 0.000 NA   NA
 364393 364394 S1952 S1953     TRUE 0.991 -42.000 0.000 1.000 Y NA
 364394 364395 S1953 S1954     FALSE 0.007 543.000 0.000 NA   NA
 364395 364396 S1954 S1955     FALSE 0.206 100.000 0.000 NA   NA
 364396 364397 S1955 S1957     FALSE 0.004 1243.000 0.000 NA   NA
 364397 364398 S1957 S1958     FALSE 0.302 60.000 0.083 NA   NA
 364398 364399 S1958 S1959     FALSE 0.202 75.000 0.000 NA   NA
 364399 364400 S1959 S1960     FALSE 0.323 236.000 0.000 1.000 Y NA
 364401 364402 S1961 S1962     TRUE 0.996 -81.000 0.000 0.097 Y NA
 364403 364404 S1963 S1964   sitA FALSE 0.011 456.000 0.000 1.000   NA
 364404 364405 S1964 S1965 sitA sitB TRUE 0.998 0.000 0.894 1.000 Y NA
 364405 364406 S1965 S1966 sitB sitC TRUE 0.999 -3.000 0.857 0.074 Y NA
 364406 364407 S1966 S1967 sitC sitD TRUE 0.999 -3.000 0.525 0.005 Y NA
 364408 364409 S1968 S1969     TRUE 0.796 11.000 0.000 NA   NA
 364409 364410 S1969 S1970     TRUE 0.516 24.000 0.000 NA   NA
 364410 364411 S1970 S1971     FALSE 0.230 60.000 0.000 NA   NA
 364411 364412 S1971 S1972     FALSE 0.075 217.000 0.000 NA   NA
 364412 364413 S1972 S1973     FALSE 0.100 208.000 0.000 1.000   NA
 364413 364414 S1973 S1975     FALSE 0.197 213.000 0.000 0.097   NA
 364414 364415 S1975 S1978     FALSE 0.046 589.000 0.000 1.000 Y NA
 364415 364416 S1978 S1980     FALSE 0.307 240.000 0.000 1.000 Y NA
 364416 364417 S1980 S1981     FALSE 0.036 701.000 0.000 1.000 Y NA
 364417 400197 S1981 S1982   tRNA-Gly FALSE 0.217 115.000 0.000 NA   NA
 400197 400196 S1982 S1983 tRNA-Gly tRNA-Thr TRUE 0.862 4.000 0.000 NA   NA
 400196 400195 S1983 S1984 tRNA-Thr tRNA-Arg TRUE 0.870 3.000 0.000 NA   NA
 400195 400194 S1984 S1985 tRNA-Arg tRNA-Met TRUE 0.876 2.000 0.000 NA   NA
 400194 364418 S1985 S1986 tRNA-Met   FALSE 0.138 177.000 0.000 NA   NA
 364418 364419 S1986 S1987     TRUE 0.899 -3.000 0.000 NA   NA
 364420 364421 S1989 S1990     FALSE 0.006 498.000 0.000 1.000 N NA
 364421 364422 S1990 S1991     FALSE 0.325 44.000 0.000 NA   NA
 364422 364423 S1991 S1992     TRUE 0.986 -3.000 0.400 NA   NA
 364423 364424 S1992 S1994     FALSE 0.214 124.000 0.000 NA   NA
 364424 364425 S1994 S1995     TRUE 0.862 4.000 0.000 NA   NA
 2179190 364427 S1999 S2000 yecE yecN FALSE 0.270 53.000 0.000 NA   NA
 364427 364428 S2000 S2001 yecN yecO TRUE 0.453 41.000 0.089 NA   NA
 364428 364429 S2001 S2002 yecO yecP TRUE 0.982 -3.000 0.315 NA   NA
 364430 364431 S2003 S2004 bisZ yecK TRUE 0.987 25.000 0.481 0.046 Y NA
 364431 364432 S2004 S2005 yecK cutC FALSE 0.017 388.000 0.000 1.000   NA
 364432 364433 S2005 S2006 cutC yecM FALSE 0.032 320.000 0.057 1.000   NA
 364434 2179191 S2007 S2008 argS yecT FALSE 0.173 159.000 0.000 NA   NA
 364435 364436 S2009 S2011     FALSE 0.012 435.000 0.000 1.000   NA
 364436 364437 S2011 S2012   flhE FALSE 0.313 52.000 0.000 1.000   NA
 364437 2179192 S2012 S2013 flhE flhA TRUE 0.886 0.000 0.000 NA   NA
 2179192 364438 S2013 S2014 flhA flhB FALSE 0.313 46.000 0.000 NA   NA
 364441 364442 S2019 S2020     FALSE 0.008 495.000 0.000 NA   NA
 364443 364444 S2021 S2022 cheZ cheY TRUE 0.968 11.000 0.000 1.000 Y NA
 364444 364445 S2022 S2023 cheY cheB TRUE 0.972 15.000 0.000 0.009 Y NA
 364445 364446 S2023 S2024 cheB cheR TRUE 0.981 3.000 0.000 1.000 Y NA
 364446 364447 S2024 S2025 cheR tap TRUE 0.958 19.000 0.188 1.000 Y NA
 364447 364448 S2025 S2026 tap tar TRUE 0.958 46.000 0.235 0.001 Y NA
 364448 364449 S2026 S2027 tar cheW TRUE 0.828 145.000 0.043 0.003 Y NA
 364449 364450 S2027 S2028 cheW cheA TRUE 0.991 21.000 0.447 0.002 Y NA
 364450 364451 S2028 S2029 cheA motB TRUE 0.998 5.000 0.913 1.000 Y NA
 364451 364452 S2029 S2030 motB motA TRUE 0.997 -3.000 0.429 1.000 Y NA
 364452 364453 S2030 S2031 motA flhC TRUE 0.712 127.000 0.408 1.000   NA
 364453 2179193 S2031 S2032 flhC flhD TRUE 0.870 3.000 0.000 NA   NA
 364454 364455 S2033 S2034     TRUE 0.996 -81.000 0.000 0.096 Y NA
 2179194 364456 S2035 S2036 otsA otsB FALSE 0.217 133.000 0.000 NA   NA
 364456 364457 S2036 S2038 otsB araH TRUE 0.577 167.000 0.037 1.000 Y NA
 364457 364458 S2038 S2039 araH araG TRUE 0.996 12.000 0.451 0.002 Y NA
 364458 2179195 S2039 S2040 araG araF FALSE 0.204 70.000 0.000 NA   NA
 364459 364461 S2041 S2043 yecI   FALSE 0.004 795.000 0.000 NA   NA
 364461 364462 S2043 S2044   ftn FALSE 0.149 171.000 0.000 NA   NA
 364465 400193 S2047 S2048 yecA leuZ FALSE 0.102 196.000 0.000 NA   NA
 400193 400192 S2048 S2049 leuZ cysT TRUE 0.717 13.000 0.000 NA   NA
 400192 400191 S2049 S2050 cysT glyW FALSE 0.257 55.000 0.000 NA   NA
 400191 364466 S2050 S2051 glyW pgsA FALSE 0.189 152.000 0.000 NA   NA
 364466 364467 S2051 S2052 pgsA uvrC TRUE 0.551 57.000 0.227 1.000 N NA
 364467 364468 S2052 S2053 uvrC uvrY TRUE 0.972 -3.000 0.086 0.019 N NA
 364470 364471 S2055 S2056 sdiA yecC FALSE 0.091 230.000 0.071 1.000   NA
 364471 364472 S2056 S2057 yecC yecS TRUE 0.991 -3.000 0.150 1.000 Y NA
 364472 364473 S2057 S2058 yecS yedO TRUE 0.940 15.000 0.050 1.000 Y NA
 364473 2179196 S2058 S2059 yedO fliY FALSE 0.213 105.000 0.000 NA   NA
 2179196 364474 S2059 S2060 fliY fliZ FALSE 0.200 88.000 0.000 NA   NA
 364474 2179197 S2060 S2061 fliZ fliA TRUE 0.827 10.000 0.000 NA   NA
 2179197 364475 S2061 S2062 fliA fliC FALSE 0.163 165.000 0.000 NA   NA
 364476 364477 S2063 S2064 fliD fliS TRUE 0.982 25.000 0.284 0.002 Y NA
 364477 364478 S2064 S2065 fliS fliT TRUE 0.981 0.000 0.324 1.000   NA
 364478 364479 S2065 S2066 fliT amyA FALSE 0.345 78.000 0.115 1.000   NA
 364481 364482 S2068 S2069 yedE yedF TRUE 0.995 -3.000 0.844 NA   NA
 364482 2179198 S2069 S2070 yedF yedK FALSE 0.216 107.000 0.000 NA   NA
 364485 364486 S4819 S4820   ybcL TRUE 0.986 10.000 0.625 NA   NA
 364486 364487 S4820 S4821 ybcL   FALSE 0.152 169.000 0.000 NA   NA
 2179200 364489 S2077 S2078 fliF fliG TRUE 0.919 -7.000 0.000 NA   NA
 364489 364490 S2078 S2079 fliG fliH TRUE 0.995 -7.000 0.000 0.003 Y NA
 364490 364491 S2079 S2080 fliH fliI TRUE 0.993 0.000 0.000 0.003 Y NA
 364491 2179201 S2080 S2081 fliI fliJ TRUE 0.587 19.000 0.000 NA   NA
 2179201 364492 S2081 S2082 fliJ fliK TRUE 0.899 -3.000 0.000 NA   NA
 364492 364493 S2082 S2083 fliK fliL TRUE 0.749 105.000 0.119 1.000 Y NA
 364493 364494 S2083 S2084 fliL fliM TRUE 0.999 5.000 0.957 0.001 Y NA
 364494 364495 S2084 S2085 fliM fliN TRUE 0.996 -3.000 0.137 0.001 Y NA
 364495 364496 S2085 S2086 fliN fliO TRUE 0.996 3.000 0.443 1.000 Y NA
 364496 2179202 S2086 S2087 fliO fliP TRUE 0.886 0.000 0.000 NA   NA
 2179202 364497 S2087 S2088 fliP fliQ TRUE 0.827 10.000 0.000 NA   NA
 364497 364498 S2088 S2089 fliQ fliR TRUE 0.990 9.000 0.000 0.002 Y NA
 364498 364499 S2089 S2090 fliR rcsA FALSE 0.028 285.000 0.000 1.000 N NA
 2179205 364502 S2095 S2096     FALSE 0.180 156.000 0.000 NA   NA
 364502 364503 S2096 S2097   yedI FALSE 0.155 79.000 0.025 NA   NA
 364505 364506 S2099 S2100 vsr dcm TRUE 0.990 -19.000 0.000 1.000 Y NA
 364506 2179206 S2100 S2101 dcm yedJ FALSE 0.218 140.000 0.000 NA   NA
 2179206 2179207 S2101 S2102 yedJ   FALSE 0.358 40.000 0.000 NA   NA
 2179207 364507 S2102 S2103     TRUE 0.642 16.000 0.000 NA   NA
 364507 364508 S2103 S2104     TRUE 0.720 57.000 0.000 1.000 Y NA
 364510 364511 S2106 S2107     TRUE 0.999 -42.000 0.667 1.000 Y NA
 364512 364513 S2108 S2109     FALSE 0.006 628.000 0.000 1.000   NA
 364513 364514 S2109 S2110     TRUE 0.996 -81.000 0.000 0.096 Y NA
 364514 364515 S2110 S2111   yedU FALSE 0.313 46.000 0.000 NA   NA
 364516 364517 S2112 S2113 yedV yedW TRUE 0.999 0.000 0.857 0.001 Y NA
 364518 2179208 S2114 S2115     FALSE 0.219 109.000 0.000 NA   NA
 2179208 364519 S2115 S2116     TRUE 0.879 1.000 0.000 NA   NA
 364519 364520 S2116 S2117     FALSE 0.052 258.000 0.000 1.000   NA
 364524 364525 S2122 S2123     TRUE 0.996 -81.000 0.000 0.095 Y NA
 364526 364527 S2124 S2126     TRUE 0.728 85.000 0.500 NA   NA
 364527 364528 S2126 S2127     TRUE 0.994 0.000 0.900 NA   NA
 364528 364529 S2127 S2128     TRUE 0.995 0.000 1.000 NA   NA
 364529 364530 S2128 S2129     FALSE 0.328 168.000 0.167 NA   NA
 364530 364531 S2129 S2130     FALSE 0.216 130.000 0.000 NA   NA
 364531 364532 S2130 S2131     TRUE 0.806 141.000 0.182 1.000 Y NA
 364532 364533 S2131 S2133     FALSE 0.004 875.000 0.000 NA   NA
 364533 364534 S2133 S2134     TRUE 0.899 -3.000 0.000 NA   NA
 364534 5918365 S2134 S2137a     FALSE 0.004 787.000 0.000 NA   NA
 5918365 400189 S2137a S2137   tRNA-Thr TRUE 0.862 4.000 0.000 NA   NA
 400189 400187 S2137 S2138 tRNA-Thr tRNA-Met FALSE 0.202 81.000 0.000 NA   NA
 400187 364535 S2138 S2139 tRNA-Met   FALSE 0.098 199.000 0.000 NA   NA
 364535 364536 S2139 S2140     TRUE 0.899 -3.000 0.000 NA   NA
 364536 364537 S2140 S2142     TRUE 0.879 1.000 0.000 NA   NA
 364539 364540 S2143 S2144     FALSE 0.006 595.000 0.000 NA   NA
 364541 364542 S2145 S2146     FALSE 0.132 180.000 0.000 NA   NA
 364543 400132 S2148 S2149   tRNA-Asn FALSE 0.208 101.000 0.000 NA   NA
 400132 364544 S2149 S2152 tRNA-Asn   FALSE 0.005 675.000 0.000 NA   NA
 2179209 364546 S2156 S2157     TRUE 0.952 -873.000 0.000 NA   NA
 364546 364547 S2157 S2158     TRUE 0.806 141.000 0.182 1.000 Y NA
 364547 364548 S2158 S2160   amn FALSE 0.015 352.000 0.000 1.000 N NA
 364548 364549 S2160 S2161 amn   FALSE 0.020 343.000 0.000 NA   NA
 400185 2179210 S2162 S2163 asnW yeeO FALSE 0.208 101.000 0.000 NA   NA
 364550 364551 S2165 S2166 cbl nac TRUE 0.905 102.000 0.222 0.043 Y NA
 364552 364553 S2168 S2169 erfK cobT FALSE 0.153 62.000 0.015 NA   NA
 364553 364554 S2169 S2170 cobT cobS TRUE 0.984 12.000 0.056 0.003 Y NA
 364554 2179211 S2170 S2171 cobS cobU TRUE 0.899 -3.000 0.000 NA   NA
 2179211 364555 S2171 S2172 cobU   FALSE 0.320 45.000 0.000 NA   NA
 364555 364556 S2172 S2173     TRUE 0.806 141.000 0.182 1.000 Y NA
 364557 364558 S2175 S2176 is629a is629b FALSE 0.067 236.000 0.000 1.000   NA
 364559 2179212 S2177 S2178 yeeX yeeA FALSE 0.215 106.000 0.000 NA   NA
 364560 364561 S2179 S2180     TRUE 0.899 -3.000 0.000 NA   NA
 364562 364563 S2181 S2182     TRUE 0.757 12.000 0.000 NA   NA
 364564 364565 S2184 S2185     FALSE 0.205 69.000 0.000 NA   NA
 364566 364567 S2187 S2189     FALSE 0.004 777.000 0.000 NA   NA
 364567 364568 S2189 S2190     TRUE 0.899 -3.000 0.000 NA   NA
 364568 364569 S2190 S2191     TRUE 0.899 -3.000 0.000 NA   NA
 364571 364572 S2194 S2195 yeeD yeeE TRUE 0.950 14.000 0.419 NA   NA
 364572 364573 S2195 S2196 yeeE yeeF FALSE 0.134 179.000 0.000 NA   NA
 364573 364574 S2196 S2197 yeeF yeeY FALSE 0.065 213.000 0.000 1.000 N NA
 364574 364575 S2197 S2198 yeeY   FALSE 0.175 46.000 0.015 1.000 N NA
 364575 364576 S2198 S2199     FALSE 0.015 359.000 0.000 1.000 N NA
 364576 364577 S2199 S2200     TRUE 0.788 128.000 0.000 0.095 Y NA
 364577 364578 S2200 S2201   yefM FALSE 0.310 34.000 0.000 NA N NA
 364579 364580 S2202 S2203 hisG hisD TRUE 0.995 6.000 0.171 0.002 Y NA
 364580 364581 S2203 S2204 hisD hisC TRUE 0.998 -3.000 0.294 0.002 Y NA
 364581 364582 S2204 S2205 hisC hisB TRUE 0.998 0.000 0.341 0.002 Y NA
 364582 364583 S2205 S2206 hisB hisH TRUE 0.995 0.000 0.128 0.002 Y NA
 364583 364584 S2206 S2207 hisH hisA TRUE 0.992 0.000 0.010 0.002 Y NA
 364584 364585 S2207 S2208 hisA hisF TRUE 0.995 -18.000 0.003 0.002 Y NA
 364585 364586 S2208 S2209 hisF hisI TRUE 0.999 -6.000 0.430 0.002 Y NA
 364587 2179213 S2210 S2211 wzzB ugd FALSE 0.219 110.000 0.000 NA   NA
 2179213 364588 S2211 S2212 ugd gnd FALSE 0.049 250.000 0.000 NA   NA
 364588 364589 S2212 S2213 gnd   FALSE 0.219 109.000 0.000 NA   NA
 364589 364590 S2213 S2214     TRUE 0.899 -3.000 0.000 NA   NA
 364590 364591 S2214 S2215     FALSE 0.208 101.000 0.000 NA   NA
 364591 364592 S2215 S2216     FALSE 0.149 171.000 0.000 NA   NA
 364592 364593 S2216 S2217   rfbJ FALSE 0.179 58.000 0.021 NA   NA
 364593 364594 S2217 S2218 rfbJ rfbI FALSE 0.220 63.000 0.000 NA   NA
 364594 364595 S2218 S2219 rfbI rfc TRUE 0.862 4.000 0.000 NA   NA
 364595 364596 S2219 S2220 rfc rfbG TRUE 0.571 20.000 0.000 NA   NA
 364596 364597 S2220 S2221 rfbG rfbF TRUE 0.533 29.000 0.077 NA   NA
 364597 364598 S2221 S2222 rfbF rfbE TRUE 0.446 30.000 0.000 NA   NA
 364598 364599 S2222 S2223 rfbE rfbC TRUE 0.678 16.000 0.000 1.000   NA
 364599 364600 S2223 S2225 rfbC rfbA TRUE 0.991 4.000 0.211 1.000 Y NA
 364600 364601 S2225 S2226 rfbA rfbD TRUE 0.862 59.000 0.053 0.002 Y NA
 364601 364602 S2226 S2227 rfbD rfbB TRUE 0.995 0.000 0.084 0.002 Y NA
 364602 364603 S2227 S2228 rfbB galF FALSE 0.111 373.000 0.000 1.000 Y NA
 364603 364604 S2228 S2229 galF wcaM TRUE 0.441 175.000 0.259 NA   NA
 364604 364605 S2229 S2230 wcaM wcaL TRUE 0.955 11.000 0.292 NA   NA
 364605 364606 S2230 S2231 wcaL wcaK TRUE 0.934 -3.000 0.095 NA   NA
 364606 364607 S2231 S2232 wcaK wzxC FALSE 0.195 180.000 0.095 NA   NA
 364607 364608 S2232 S2233 wzxC wcaJ TRUE 0.976 2.000 0.304 NA   NA
 364608 364609 S2233 S2234 wcaJ cpsG TRUE 0.777 55.000 0.538 NA N NA
 364609 364610 S2234 S2235 cpsG cpsB TRUE 0.729 193.000 1.000 1.000 N NA
 364610 364611 S2235 S2236 cpsB wcaI TRUE 0.987 3.000 0.123 1.000 Y NA
 364611 364612 S2236 S2237 wcaI wcaH TRUE 0.932 -3.000 0.108 1.000 N NA
 364612 364613 S2237 S2238 wcaH wcaG TRUE 0.964 0.000 0.217 1.000 N NA
 364613 364614 S2238 S2239 wcaG gmd TRUE 0.992 3.000 0.000 0.007 Y NA
 364614 364615 S2239 S2240 gmd wcaF TRUE 0.448 26.000 0.022 1.000   NA
 364615 2179214 S2240 S2241 wcaF wcaE TRUE 0.587 19.000 0.000 NA   NA
 364616 364617 S2242 S2243     TRUE 0.996 -81.000 0.000 0.094 Y NA
 2179215 2179216 S2244 S2245 wcaD wcaC TRUE 0.931 -25.000 0.000 NA   NA
 2179216 364618 S2245 S2246 wcaC wcaB TRUE 0.899 -3.000 0.000 NA   NA
 364618 2179217 S2246 S2247 wcaB wcaA TRUE 0.870 3.000 0.000 NA   NA
 2179217 364619 S2247 S2248 wcaA   FALSE 0.199 93.000 0.000 NA   NA
 364619 364620 S2248 S2249   wzb TRUE 0.844 3.000 0.000 1.000 N NA
 364620 364621 S2249 S2250 wzb wza TRUE 0.965 6.000 0.286 1.000 N NA
 364623 364624 S2252 S2253 asmA dcd TRUE 0.479 22.000 0.057 NA N NA
 364624 364625 S2253 S2254 dcd udk TRUE 0.714 92.000 0.098 1.000 Y NA
 364626 364627 S2256 S2258   alkA FALSE 0.004 3229.000 0.000 1.000   NA
 2179220 364628 S2260 S2261     TRUE 0.839 9.000 0.000 NA   NA
 364628 364629 S2261 S2262     TRUE 0.899 -3.000 0.000 NA   NA
 364630 2179221 S2263 S2264 issfl4   TRUE 0.488 26.000 0.000 NA   NA
 2179221 2179222 S2264 S2265   yegN TRUE 0.886 0.000 0.000 NA   NA
 2179222 364631 S2265 S2266 yegN yegO TRUE 0.879 1.000 0.000 NA   NA
 364631 364632 S2266 S2267 yegO yegB TRUE 0.984 1.000 0.438 1.000 N NA
 364632 364633 S2267 S2268 yegB baeS TRUE 0.945 -3.000 0.139 1.000 N NA
 364633 364634 S2268 S2269 baeS baeR TRUE 0.998 -3.000 0.591 1.000 Y NA
 364634 364635 S2269 S2270 baeR   FALSE 0.217 152.000 0.062 NA   NA
 364635 364636 S2270 S2271   yegQ FALSE 0.128 147.000 0.008 NA   NA
 2179223 364637 S2272 S2273     TRUE 0.925 -12.000 0.000 NA   NA
 364639 364640 S2275 S2277 gatR gatD FALSE 0.174 100.000 0.000 1.000 N NA
 364640 364641 S2277 S2278 gatD   FALSE 0.369 33.000 0.000 1.000 N NA
 364641 364642 S2278 S2279     TRUE 0.996 -81.000 0.000 0.094 Y NA
 364642 364643 S2279 S2280   gatC FALSE 0.169 95.000 0.000 1.000 N NA
 364643 364644 S2280 S2281 gatC gatB TRUE 0.991 4.000 0.000 0.011 Y NA
 364644 364645 S2281 S2282 gatB gatA TRUE 0.931 31.000 0.000 0.010 Y NA
 364645 364646 S2282 S2283 gatA gatZ TRUE 0.974 10.000 0.000 1.000 Y NA
 364646 364647 S2283 S2284 gatZ gatY TRUE 0.867 29.000 0.000 1.000 Y NA
 364647 364648 S2284 S2285 gatY   FALSE 0.375 308.000 0.000 0.001 Y NA
 2179224 364649 S2286 S2287     TRUE 0.899 -3.000 0.000 NA   NA
 364650 364651 S2288 S2289 yegW yegX FALSE 0.260 48.000 0.000 1.000 N NA
 364651 364652 S2289 S2290 yegX thiD FALSE 0.180 65.000 0.000 1.000 N NA
 364652 364653 S2290 S2291 thiD thiM TRUE 0.994 -3.000 0.037 0.004 Y NA
 364653 364654 S2291 S2292 thiM yohL FALSE 0.069 223.000 0.000 NA   NA
 2179225 2179226 S2293 S2294 yohM   FALSE 0.364 39.000 0.000 NA   NA
 2179227 364655 S2295 S2296 yehA yehB TRUE 0.642 16.000 0.000 NA   NA
 364655 2179228 S2296 S2297 yehB yehC TRUE 0.642 16.000 0.000 NA   NA
 2179228 364656 S2297 S2298 yehC yehD FALSE 0.218 114.000 0.000 NA   NA
 364656 364657 S2298 S2299 yehD   FALSE 0.031 276.000 0.000 1.000 N NA
 364657 364658 S2299 S2300     TRUE 0.996 -81.000 0.000 0.094 Y NA
 364658 364659 S2300 S2301   yehE FALSE 0.203 97.000 0.000 NA   NA
 364659 364660 S2301 S2302 yehE mrp FALSE 0.043 262.000 0.000 NA   NA
 364661 2179229 S2303 S2304 metG molR FALSE 0.215 141.000 0.000 NA   NA
 2179229 2179230 S2304 S2305 molR   TRUE 0.952 -557.000 0.000 NA   NA
 2179230 2179231 S2305 S2306     FALSE 0.215 141.000 0.000 NA   NA
 2179231 2179232 S2306 S2308     FALSE 0.005 658.000 0.000 NA   NA
 2179232 2179233 S2308 S2309     FALSE 0.216 129.000 0.000 NA   NA
 2179233 2179234 S2309 S2312   yehI FALSE 0.003 3080.000 0.000 NA   NA
 2179234 364662 S2312 S2313 yehI yehL FALSE 0.004 944.000 0.000 NA   NA
 364662 364663 S2313 S2314 yehL yehM TRUE 0.796 11.000 0.000 NA   NA
 364663 364664 S2314 S2315 yehM yehP TRUE 0.919 -7.000 0.000 NA   NA
 364664 364665 S2315 S2316 yehP yehQ TRUE 0.899 -3.000 0.000 NA   NA
 364666 364667 S2317 S2318     TRUE 0.996 -81.000 0.000 0.094 Y NA
 2179235 364669 S2323 S2321 yehS   TRUE 0.952 -683.000 0.000 NA   NA
 364669 364670 S2321 S2322     TRUE 0.996 -81.000 0.000 0.093 Y NA
 364670 364671 S2322 S2324   yehT FALSE 0.009 416.000 0.000 1.000 N NA
 364671 364672 S2324 S2325 yehT yehU TRUE 0.999 -3.000 0.877 0.010 Y NA
 364675 364676 S2331