MicrobesOnline Operon Predictions for Streptococcus pyogenes M1 GAS

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
MOGScore Conservation, ranging from 0 (not conserved) to 1 (100% conserved)
GOScore Smallest shared GO category, as a fraction of the genome, or missing if one of the genes is not characterized
COGSim Whether the genes share a COG category or not
ExprSim Correlation of expression patterns (not available for most genomes)

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep MOGScore GOScore COGSim ExprSim
 100568 100569 SPy0002 SPy0003 dnaA dnaN TRUE 0.639 155.000 0.328 1.000 Y 0.370
 100569 100570 SPy0003 SPy0004 dnaN   TRUE 0.447 75.000 0.009 NA   0.663
 100570 100571 SPy0004 SPy0006     FALSE 0.072 330.000 0.064 NA   0.194
 100571 100572 SPy0006 SPy0007   pth TRUE 0.793 70.000 0.184 1.000 Y -0.210
 100572 100573 SPy0007 SPy0008 pth trcF TRUE 0.918 3.000 0.137 1.000 N 0.159
 100573 100574 SPy0008 SPy0009 trcF   FALSE 0.151 139.000 0.024 1.000 N 0.058
 100574 100575 SPy0009 SPy0010   divIC TRUE 0.911 -13.000 0.053 1.000 N -0.897
 100575 100576 SPy0010 SPy0012 divIC   FALSE 0.130 135.000 0.011 1.000 N -0.980
 100576 100577 SPy0012 SPy0013     TRUE 0.898 -3.000 0.014 1.000 N -0.050
 100577 100578 SPy0013 SPy0015   ftsH FALSE 0.020 569.000 0.051 1.000 N -0.115
 100578 100579 SPy0015 SPy0016 ftsH   FALSE 0.026 325.000 0.009 1.000 N -0.599
 100579 3811771 SPy0016 SPy_r01     FALSE 0.023 566.000 0.000 NA   NA
 3811771 398197 SPy_r01 SPy_t01   tRNA-Ala TRUE 0.555 50.000 0.000 NA   NA
 398197 407264 SPy_t01 SPy_r02 tRNA-Ala rrl FALSE 0.045 296.000 0.000 NA   NA
 407264 3811772 SPy_r02 SPy_r13 rrl   FALSE 0.296 87.000 0.000 NA   NA
 3811772 398198 SPy_r13 SPy_t02   tRNA-Val TRUE 0.847 18.000 0.000 NA   NA
 398198 398199 SPy_t02 SPy_t03 tRNA-Val tRNA-Asp TRUE 0.847 18.000 0.000 NA   NA
 398199 398200 SPy_t03 SPy_t04 tRNA-Asp tRNA-Lys TRUE 0.727 32.000 0.000 NA   NA
 398200 398201 SPy_t04 SPy_t05 tRNA-Lys tRNA-Leu TRUE 0.868 6.000 0.000 NA   NA
 398201 398202 SPy_t05 SPy_t06 tRNA-Leu tRNA-Thr TRUE 0.851 11.000 0.000 NA   NA
 398202 398203 SPy_t06 SPy_t07 tRNA-Thr tRNA-Gly TRUE 0.860 13.000 0.000 NA   NA
 398203 398204 SPy_t07 SPy_t08 tRNA-Gly tRNA-Leu TRUE 0.861 9.000 0.000 NA   NA
 398204 398205 SPy_t08 SPy_t09 tRNA-Leu tRNA-Arg TRUE 0.853 17.000 0.000 NA   NA
 398205 398206 SPy_t09 SPy_t10 tRNA-Arg tRNA-Pro TRUE 0.879 4.000 0.000 NA   NA
 398206 3811773 SPy_t10 SPy_r03 tRNA-Pro   FALSE 0.202 127.000 0.000 NA   NA
 3811773 398207 SPy_r03 SPy_t11   tRNA-Ala TRUE 0.555 50.000 0.000 NA   NA
 398207 407265 SPy_t11 SPy_r04 tRNA-Ala rrl FALSE 0.045 296.000 0.000 NA   NA
 407265 3811774 SPy_r04 SPy_r14 rrl   FALSE 0.296 87.000 0.000 NA   NA
 3811774 398208 SPy_r14 SPy_t12   tRNA-Val TRUE 0.847 18.000 0.000 NA   NA
 398208 398209 SPy_t12 SPy_t13 tRNA-Val tRNA-Gly TRUE 0.868 6.000 0.000 NA   NA
 398209 398210 SPy_t13 SPy_t14 tRNA-Gly tRNA-Ile TRUE 0.689 35.000 0.000 NA   NA
 398210 398211 SPy_t14 SPy_t15 tRNA-Ile tRNA-Glu TRUE 0.808 23.000 0.000 NA   NA
 398211 2137374 SPy_t15 SPy_t16 tRNA-Glu   TRUE 0.853 10.000 0.000 NA   NA
 2137374 398213 SPy_t16 SPy_t17   tRNA-Met TRUE 0.851 11.000 0.000 NA   NA
 398213 398214 SPy_t17 SPy_t18 tRNA-Met tRNA-Phe TRUE 0.822 21.000 0.000 NA   NA
 398214 398215 SPy_t18 SPy_t19 tRNA-Phe tRNA-Gly TRUE 0.860 13.000 0.000 NA   NA
 398215 398216 SPy_t19 SPy_t20 tRNA-Gly tRNA-Ile TRUE 0.689 35.000 0.000 NA   NA
 398216 398217 SPy_t20 SPy_t21 tRNA-Ile tRNA-Ser TRUE 0.853 10.000 0.000 NA   NA
 398217 100580 SPy_t21 SPy0019 tRNA-Ser   FALSE 0.018 1474.000 0.000 NA   NA
 100580 100581 SPy0019 SPy0020   prsA.2 FALSE 0.128 253.000 0.107 NA   -0.304
 100581 100582 SPy0020 SPy0021 prsA.2   FALSE 0.042 186.000 0.000 1.000 N 0.428
 100582 100583 SPy0021 SPy0022   plsX FALSE 0.187 103.000 0.011 1.000 N 0.584
 100583 100584 SPy0022 SPy0023 plsX acpP.2 TRUE 0.993 -7.000 0.017 0.010 Y -0.473
 100584 100585 SPy0023 SPy0024 acpP.2 purC FALSE 0.181 121.000 0.017 1.000 N 0.934
 100585 100586 SPy0024 SPy0025 purC   TRUE 0.650 76.000 0.043 1.000 Y 0.906
 100586 100587 SPy0025 SPy0026   purF TRUE 0.342 161.000 0.024 1.000 Y -0.699
 100587 100588 SPy0026 SPy0027 purF purM TRUE 0.961 28.000 0.248 1.000 Y -0.788
 100588 100589 SPy0027 SPy0028 purM purN TRUE 0.820 168.000 0.238 0.003 Y -0.806
 100591 100592 SPy0032 SPy0033 purD purE FALSE 0.153 278.000 0.044 1.000 Y NA
 100592 100593 SPy0033 SPy0034 purE purK TRUE 0.992 -49.000 0.002 0.002 Y NA
 100593 100594 SPy0034 SPy0035 purK abiR TRUE 0.774 27.000 0.000 NA   0.884
 100594 100595 SPy0035 SPy0036 abiR purB TRUE 0.845 18.000 0.000 NA   0.413
 100595 100596 SPy0036 SPy0037 purB   FALSE 0.181 132.000 0.005 1.000   0.121
 100596 100597 SPy0037 SPy0038   ruvB FALSE 0.065 226.000 0.002 1.000   0.195
 100597 100598 SPy0038 SPy0039 ruvB   FALSE 0.116 138.000 0.005 1.000 N -0.302
 100598 100599 SPy0039 SPy0040     TRUE 0.873 23.000 0.019 NA   0.881
 100599 100600 SPy0040 SPy0041     TRUE 0.987 -3.000 0.351 NA   -0.965
 100600 100601 SPy0041 SPy0044   adhA FALSE 0.012 3203.000 0.000 1.000   0.057
 100601 100602 SPy0044 SPy0045 adhA   FALSE 0.021 388.000 0.000 1.000   0.687
 100602 100603 SPy0045 SPy0047   rpsJ FALSE 0.034 201.000 0.000 1.000 N -0.522
 100603 100604 SPy0047 SPy0049 rpsJ rplC TRUE 0.701 248.000 0.467 0.045 Y -0.686
 100604 100605 SPy0049 SPy0050 rplC rplD TRUE 0.995 24.000 0.544 0.033 Y 0.213
 100605 100606 SPy0050 SPy0051 rplD rplW TRUE 0.996 0.000 0.307 0.033 Y 0.449
 100606 100607 SPy0051 SPy0052 rplW rplB TRUE 0.998 18.000 0.849 0.040 Y -0.344
 100607 100608 SPy0052 SPy0053 rplB rpsS TRUE 0.946 139.000 0.820 0.045 Y -0.374
 100608 100609 SPy0053 SPy0055 rpsS rplV TRUE 0.998 16.000 0.769 0.045 Y -0.183
 100609 100610 SPy0055 SPy0056 rplV rpsC TRUE 0.997 13.000 0.719 0.045 Y 0.092
 100610 100611 SPy0056 SPy0057 rpsC rplP TRUE 0.998 4.000 0.828 0.045 Y -0.599
 100611 100612 SPy0057 SPy0059 rplP rpmC TRUE 0.998 10.000 0.802 0.033 Y -0.857
 100612 100613 SPy0059 SPy0060 rpmC rpsQ TRUE 0.997 26.000 0.828 0.033 Y 0.944
 100613 100614 SPy0060 SPy0061 rpsQ   TRUE 0.997 25.000 0.791 0.045 Y NA
 100614 100615 SPy0061 SPy0062   rplX TRUE 0.976 79.000 0.810 0.045 Y NA
 100615 100616 SPy0062 SPy0063 rplX rplE TRUE 0.997 24.000 0.758 0.033 Y 0.973
 100616 100617 SPy0063 SPy0064 rplE rpsN TRUE 0.996 16.000 0.496 0.033 Y 0.668
 100617 100618 SPy0064 SPy0065 rpsN rpsH TRUE 0.886 151.000 0.473 0.033 Y 0.322
 100618 100619 SPy0065 SPy0066 rpsH rplF TRUE 0.895 203.000 0.808 0.033 Y 0.612
 100619 100620 SPy0066 SPy0067 rplF rplR TRUE 0.967 105.000 0.815 0.033 Y 0.648
 100620 100621 SPy0067 SPy0069 rplR rpsE TRUE 0.998 19.000 0.814 0.045 Y -0.728
 100621 100622 SPy0069 SPy0071 rpsE rpmD TRUE 0.998 15.000 0.789 0.045 Y -0.416
 100622 100623 SPy0071 SPy0072 rpmD rplO TRUE 0.877 214.000 0.653 0.006 Y 0.031
 100623 100624 SPy0072 SPy0073 rplO secY TRUE 0.985 17.000 0.730 1.000 N 0.597
 100624 100625 SPy0073 SPy0074 secY adk TRUE 0.346 150.000 0.241 1.000 N 0.678
 100625 100626 SPy0074 SPy0075 adk infA FALSE 0.220 118.000 0.059 1.000 N 0.626
 100626 100627 SPy0075 SPy0076 infA rpmJ TRUE 0.930 26.000 0.067 1.000 Y -0.917
 100627 100628 SPy0076 SPy0077 rpmJ rpsM TRUE 0.985 18.000 0.086 0.033 Y -0.667
 100628 100629 SPy0077 SPy0078 rpsM rpsK TRUE 0.998 18.000 0.810 0.033 Y -0.223
 100629 100630 SPy0078 SPy0080 rpsK rpoA TRUE 0.833 46.000 0.308 1.000 N -0.630
 100630 100631 SPy0080 SPy0080a rpoA rplQ TRUE 0.990 15.000 0.873 1.000 N NA
 100631 3811775 SPy0080a SPy_r05 rplQ   FALSE 0.020 823.000 0.000 NA   NA
 3811775 398218 SPy_r05 SPy_t22   tRNA-Ala TRUE 0.555 50.000 0.000 NA   NA
 398218 2137376 SPy_t22 SPy_r06 tRNA-Ala   FALSE 0.045 296.000 0.000 NA   NA
 2137376 3811776 SPy_r06 SPy_r15     FALSE 0.303 86.000 0.000 NA   NA
 3811776 398219 SPy_r15 SPy_t23   tRNA-Val TRUE 0.847 18.000 0.000 NA   NA
 398219 398220 SPy_t23 SPy_t24 tRNA-Val tRNA-Gly TRUE 0.868 6.000 0.000 NA   NA
 398220 398221 SPy_t24 SPy_t25 tRNA-Gly tRNA-Ile TRUE 0.689 35.000 0.000 NA   NA
 398221 398222 SPy_t25 SPy_t26 tRNA-Ile tRNA-Glu TRUE 0.808 23.000 0.000 NA   NA
 398222 398223 SPy_t26 SPy_t27 tRNA-Glu tRNA-Ser TRUE 0.851 11.000 0.000 NA   NA
 398223 398224 SPy_t27 SPy_t28 tRNA-Ser tRNA-Met TRUE 0.853 10.000 0.000 NA   NA
 398224 398225 SPy_t28 SPy_t29 tRNA-Met tRNA-Phe TRUE 0.822 21.000 0.000 NA   NA
 398225 398226 SPy_t29 SPy_t30 tRNA-Phe tRNA-Tyr TRUE 0.830 20.000 0.000 NA   NA
 398226 398227 SPy_t30 SPy_t31 tRNA-Tyr tRNA-Trp TRUE 0.865 7.000 0.000 NA   NA
 398227 398228 SPy_t31 SPy_t32 tRNA-Trp tRNA-His TRUE 0.855 12.000 0.000 NA   NA
 398228 2137377 SPy_t32 SPy_t33 tRNA-His   TRUE 0.853 10.000 0.000 NA   NA
 2137377 398230 SPy_t33 SPy_t34   tRNA-Leu TRUE 0.830 20.000 0.000 NA   NA
 398230 100632 SPy_t34 SPy0084 tRNA-Leu   FALSE 0.057 260.000 0.000 NA   NA
 100632 2137378 SPy0084 SPy_0088     FALSE 0.022 638.000 0.000 NA   NA
 2137378 100633 SPy_0088 SPy0092   adcR FALSE 0.232 113.000 0.000 NA   NA
 100633 100634 SPy0092 SPy0093 adcR adcC TRUE 0.939 4.000 0.192 1.000 N 0.549
 100634 100635 SPy0093 SPy0094 adcC adcB TRUE 0.997 -7.000 0.673 1.000 Y -0.361
 100636 100637 SPy0095 SPy0096   tyrS TRUE 0.414 51.000 0.004 1.000 N 0.433
 100638 100639 SPy0097 SPy0098 pbp1b rpoB FALSE 0.020 264.000 0.000 1.000 N -0.393
 100639 100640 SPy0098 SPy0099 rpoB rpoC TRUE 0.982 91.000 0.851 0.002 Y 0.070
 100640 100641 SPy0099 SPy0100 rpoC   FALSE 0.208 152.000 0.007 NA   0.914
 100641 100642 SPy0100 SPy0101   comYA TRUE 0.438 93.000 0.083 NA   -0.074
 100642 100643 SPy0101 SPy0102 comYA comYB TRUE 0.855 122.000 0.639 1.000 Y -0.525
 100643 100644 SPy0102 SPy0103 comYB comYC TRUE 0.999 2.000 0.861 0.002 Y -0.601
 100644 100645 SPy0103 SPy0104 comYC   TRUE 0.982 -25.000 0.110 NA Y NA
 100645 100646 SPy0104 SPy0105     TRUE 0.992 5.000 0.786 NA   NA
 100646 100647 SPy0105 SPy0106   comYD TRUE 0.983 -7.000 0.250 NA   NA
 100647 100648 SPy0106 SPy0107 comYD   TRUE 0.979 -16.000 0.232 NA   NA
 100648 100649 SPy0107 SPy0108     TRUE 0.423 98.000 0.087 NA   0.987
 100649 100650 SPy0108 SPy0109   ackA TRUE 0.561 59.000 0.130 1.000 N 0.344
 100650 100651 SPy0109 SPy0110 ackA   FALSE 0.103 187.000 0.000 NA   -0.044
 100652 100653 SPy0112 SPy0115 proC pepA TRUE 0.547 48.000 0.041 1.000 N 0.188
 100653 100654 SPy0115 SPy0116 pepA   TRUE 0.412 110.000 0.100 NA   0.132
 100656 100657 SPy0121 SPy0122     TRUE 0.744 20.000 0.005 1.000 N -0.226
 100657 100658 SPy0122 SPy0123     TRUE 0.906 -13.000 0.034 1.000 N 0.154
 100658 100659 SPy0123 SPy0124   rofA FALSE 0.208 147.000 0.003 NA   0.434
 100660 100661 SPy0127 SPy0128     TRUE 0.825 33.000 0.061 NA   -0.169
 100661 100662 SPy0128 SPy0129     TRUE 0.848 10.000 0.000 NA   -0.206
 100662 100663 SPy0129 SPy0130     TRUE 0.985 22.000 0.667 NA   0.863
 100664 100665 SPy0131 SPy0133     FALSE 0.195 211.000 0.000 NA Y -0.403
 100669 100670 SPy0140 SPy0141   atoD.2 TRUE 0.961 12.000 0.100 1.000 Y -0.067
 100670 100671 SPy0141 SPy0142 atoD.2   TRUE 0.992 3.000 0.200 0.054 Y NA
 100673 100674 SPy0145 SPy0146     TRUE 0.690 37.000 0.016 NA N 0.343
 100674 100675 SPy0146 SPy0147     FALSE 0.026 455.000 0.000 NA   0.929
 100675 100676 SPy0147 SPy0148   ntpI TRUE 0.920 -10.000 0.000 NA   0.362
 100676 100677 SPy0148 SPy0149 ntpI ntpK TRUE 0.998 2.000 0.848 0.010   0.081
 100677 100678 SPy0149 SPy0150 ntpK ntpE TRUE 0.821 68.000 0.045 0.004   -0.346
 100678 100679 SPy0150 SPy0151 ntpE ntpC TRUE 0.980 16.000 0.097 0.004   0.263
 100679 100680 SPy0151 SPy0154 ntpC ntpA FALSE 0.173 518.000 0.000 0.010 Y 0.034
 100680 100681 SPy0154 SPy0155 ntpA ntpB TRUE 0.999 1.000 0.776 0.010 Y -0.291
 100681 100682 SPy0155 SPy0157 ntpB ntpD TRUE 0.978 45.000 0.238 0.004 Y -0.370
 100683 100684 SPy0158 SPy0159     TRUE 0.992 13.000 0.818 NA   -0.880
 100685 100686 SPy0160 SPy0163 purA   FALSE 0.117 342.000 0.000 0.022   -0.379
 100686 100687 SPy0163 SPy0164   nusG FALSE 0.090 173.000 0.000 1.000   0.961
 100687 100688 SPy0164 SPy0165 nusG nga FALSE 0.021 372.000 0.000 1.000   -0.200
 100688 100689 SPy0165 SPy0166 nga   TRUE 0.485 134.000 0.286 1.000   0.519
 100689 100690 SPy0166 SPy0167   slo TRUE 0.884 24.000 0.125 1.000   0.261
 100690 100691 SPy0167 SPy0168 slo   FALSE 0.060 250.000 0.000 NA   0.034
 100692 100693 SPy0169 SPy0170     FALSE 0.029 412.000 0.000 NA   NA
 100693 100694 SPy0170 SPy0171     FALSE 0.110 185.000 0.000 NA   NA
 100695 100696 SPy0172 SPy0173 metB leuS FALSE 0.047 175.000 0.000 1.000 N -0.742
 100696 100697 SPy0173 SPy0174 leuS   FALSE 0.027 313.000 0.000 1.000   0.065
 100697 100698 SPy0174 SPy0175     TRUE 0.924 71.000 0.431 0.023   0.142
 100698 100699 SPy0175 SPy0176     TRUE 0.880 122.000 0.279 0.017 Y 0.186
 100699 100700 SPy0176 SPy0177     TRUE 0.794 91.000 0.328 1.000 Y 0.542
 100700 100701 SPy0177 SPy0178     TRUE 0.992 5.000 0.536 1.000 Y NA
 100701 100702 SPy0178 SPy0179   araD TRUE 0.995 2.000 0.700 1.000 Y NA
 100702 100703 SPy0179 SPy0180 araD   TRUE 0.485 58.000 0.000 NA   0.424
 100703 100704 SPy0180 SPy0181     FALSE 0.199 124.000 0.000 NA   -0.794
 100704 100705 SPy0181 SPy0182     FALSE 0.212 253.000 0.231 NA   -0.643
 100705 100706 SPy0182 SPy0183   opuAA FALSE 0.025 488.000 0.000 NA   0.583
 100706 100707 SPy0183 SPy0184 opuAA opuABC TRUE 0.988 16.000 0.177 0.089 Y -0.472
 100707 100708 SPy0184 SPy0185 opuABC polA FALSE 0.122 131.000 0.003 1.000 N 0.821
 100708 100709 SPy0185 SPy0186 polA   FALSE 0.132 187.000 0.005 NA   -0.962
 100709 100710 SPy0186 SPy0187   spf TRUE 0.617 52.000 0.010 NA   -0.689
 100710 100711 SPy0187 SPy0188 spf vlg FALSE 0.147 156.000 0.000 NA   0.439
 100711 100712 SPy0188 SPy0189 vlg   FALSE 0.070 222.000 0.000 NA   -0.881
 100712 100713 SPy0189 SPy0190     TRUE 0.887 -7.000 0.000 1.000   -0.416
 100713 100714 SPy0190 SPy0191     TRUE 0.924 -7.000 0.000 NA   0.597
 2137380 100715 SPy_0191b SPy0195     TRUE 0.903 -293.000 0.000 NA   NA
 100715 100716 SPy0195 SPy0196     FALSE 0.244 78.000 0.000 NA N -0.257
 100718 100719 SPy0198 SPy0199     TRUE 0.964 21.000 0.000 0.068 Y 0.779
 100719 100720 SPy0199 SPy0201     FALSE 0.292 86.000 0.000 NA   -0.650
 100721 100722 SPy0203 SPy0205 tgt   FALSE 0.075 217.000 0.004 1.000   NA
 100722 100723 SPy0205 SPy0207     TRUE 0.927 4.000 0.039 NA   NA
 100723 100724 SPy0207 SPy0208     FALSE 0.270 140.000 0.033 NA   0.558
 100726 100727 SPy0212 SPy0215 speG pgi FALSE 0.017 456.000 0.000 1.000   -0.615
 2137381 100729 SPy_0217 SPy0219     TRUE 0.864 8.000 0.000 NA   NA
 100729 100730 SPy0219 SPy0223     FALSE 0.110 185.000 0.000 NA   NA
 100731 100732 SPy0224 SPy0226 hasC.2 gpsA TRUE 0.608 33.000 0.007 1.000 N -0.702
 100733 100734 SPy0227 SPy0228     TRUE 0.861 9.000 0.000 NA   NA
 100734 100735 SPy0228 SPy0229     TRUE 0.963 -7.000 0.080 NA   NA
 100735 100736 SPy0229 SPy0230     TRUE 0.999 3.000 0.720 0.009 Y -0.798
 100736 100737 SPy0230 SPy0233     FALSE 0.291 117.000 0.010 NA   -0.610
 100737 100738 SPy0233 SPy0235     FALSE 0.285 110.000 0.005 NA   -0.703
 100738 100739 SPy0235 SPy0236   sms FALSE 0.279 81.000 0.028 1.000 N -0.786
 100739 100740 SPy0236 SPy0237 sms   FALSE 0.072 189.000 0.009 1.000 N 0.451
 100740 100741 SPy0237 SPy0238     TRUE 0.498 146.000 0.278 NA   -0.374
 100741 100742 SPy0238 SPy0239   gltX FALSE 0.151 182.000 0.008 NA   -0.471
 100742 100743 SPy0239 SPy0242 gltX   FALSE 0.011 395.000 0.000 1.000 N 0.713
 100743 100744 SPy0242 SPy0244     TRUE 0.998 -3.000 0.750 NA Y -0.228
 100744 100745 SPy0244 SPy0245     TRUE 0.994 4.000 0.571 NA Y -0.485
 100745 100746 SPy0245 SPy0246   rnpA FALSE 0.009 540.000 0.000 1.000 N 0.507
 100746 100747 SPy0246 SPy0247 rnpA   TRUE 0.899 -34.000 0.052 1.000 N 0.360
 100747 100748 SPy0247 SPy0248     TRUE 0.911 12.000 0.106 1.000   -0.064
 100748 100749 SPy0248 SPy0250   rpmH FALSE 0.036 315.000 0.002 1.000   0.308
 100749 100750 SPy0250 SPy0251 rpmH   FALSE 0.035 274.000 0.000 1.000   0.781
 100750 100751 SPy0251 SPy0252     TRUE 0.956 49.000 0.500 1.000 Y 0.445
 100751 100752 SPy0252 SPy0254     TRUE 0.976 28.000 0.133 0.042 Y -0.512
 100752 100753 SPy0254 SPy0255     TRUE 0.999 13.000 1.000 0.042 Y 0.326
 100753 100754 SPy0255 SPy0256     FALSE 0.143 157.000 0.000 NA   -0.356
 100754 100755 SPy0256 SPy0257   nanH TRUE 0.983 12.000 0.500 NA   0.430
 100755 100756 SPy0257 SPy0258 nanH   TRUE 0.846 22.000 0.108 1.000 N -0.270
 100758 100759 SPy0260 SPy0261     TRUE 0.982 -7.000 0.058 NA Y 0.252
 100759 100760 SPy0261 SPy0262   ksgA FALSE 0.257 114.000 0.093 1.000 N -0.274
 100760 100761 SPy0262 SPy0263 ksgA   FALSE 0.024 424.000 0.003 1.000   -0.233
 100761 100762 SPy0263 SPy0264   rpe TRUE 0.947 10.000 0.213 1.000   -0.941
 100762 100763 SPy0264 SPy0265 rpe   TRUE 0.955 -7.000 0.166 1.000 N -0.891
 100763 100764 SPy0265 SPy0266     TRUE 0.932 2.000 0.030 NA   -0.956
 100764 100765 SPy0266 SPy0267   cbf TRUE 0.951 -10.000 0.030 NA   -0.801
 100765 100766 SPy0267 SPy0268 cbf purR FALSE 0.071 267.000 0.052 1.000   -0.787
 100766 100767 SPy0268 SPy0269 purR prgA TRUE 0.950 -9.000 0.017 NA   -0.079
 100767 100768 SPy0269 SPy0271 prgA rpsL FALSE 0.121 208.000 0.012 NA   -0.182
 100768 100769 SPy0271 SPy0272 rpsL rpsG TRUE 0.992 21.000 0.224 0.006 Y -0.918
 100769 100770 SPy0272 SPy0273 rpsG fus TRUE 0.411 367.000 0.579 1.000 Y 0.052
 100770 100771 SPy0273 SPy0274 fus plr FALSE 0.014 348.000 0.000 1.000 N 0.951
 100772 100773 SPy0276 SPy0277     TRUE 0.997 -7.000 0.758 1.000 Y NA
 100774 100775 SPy0278 SPy0280   bacA TRUE 0.632 66.000 0.118 NA   0.347
 100775 100776 SPy0280 SPy0281 bacA mecA FALSE 0.278 146.000 0.132 NA N -0.098
 100776 100777 SPy0281 SPy0282 mecA rgpG TRUE 0.959 7.000 0.267 NA N -0.668
 100777 100778 SPy0282 SPy0285 rgpG   FALSE 0.164 122.000 0.013 1.000 N -0.434
 100778 100779 SPy0285 SPy0287     TRUE 0.624 95.000 0.139 1.000 Y -0.303
 100779 100780 SPy0287 SPy0288     TRUE 0.959 31.000 0.606 1.000 N 0.191
 100780 100781 SPy0288 SPy0289     TRUE 0.973 -13.000 0.292 1.000 N -0.026
 100781 100782 SPy0289 SPy0290     TRUE 0.991 -7.000 0.152 0.002 N -0.580
 3811777 100784 SPy_r07 SPy0294   oppB TRUE 0.903 -3542.000 0.000 NA   NA
 100784 100785 SPy0294 SPy0295 oppB oppC TRUE 0.998 0.000 0.556 0.042 Y -0.888
 100785 100786 SPy0295 SPy0296 oppC oppD TRUE 0.993 9.000 0.650 1.000 Y -0.863
 100786 100787 SPy0296 SPy0297 oppD oppF TRUE 0.996 -7.000 0.095 0.002 Y -0.853
 2137382 2137383 SPy_0298 SPy_0299     TRUE 0.415 66.000 0.000 NA   NA
 398231 407267 SPy_t35 SPy_r08 tRNA-Ala rrl FALSE 0.045 296.000 0.000 NA   NA
 407267 3811778 SPy_r08 SPy_r16 rrl   FALSE 0.296 87.000 0.000 NA   NA
 3811778 398232 SPy_r16 SPy_t36   tRNA-Asn TRUE 0.868 6.000 0.000 NA   NA
 398232 398233 SPy_t36 SPy_t37 tRNA-Asn tRNA-Arg FALSE 0.333 80.000 0.000 NA   NA
 398233 100788 SPy_t37 SPy0300 tRNA-Arg comX1.1 TRUE 0.784 26.000 0.000 NA   NA
 100788 100789 SPy0300 SPy0303 comX1.1   FALSE 0.015 611.000 0.000 1.000   NA
 100789 100790 SPy0303 SPy0305     FALSE 0.170 106.000 0.000 1.000   -0.270
 100790 100791 SPy0305 SPy0306     TRUE 0.989 0.000 0.555 1.000   0.009
 100791 100792 SPy0306 SPy0307     TRUE 0.883 25.000 0.068 NA   -0.047
 100792 100793 SPy0307 SPy0308     TRUE 0.580 69.000 0.150 NA N -0.201
 100793 100794 SPy0308 SPy0309     TRUE 0.987 -3.000 0.199 1.000 Y 0.179
 100794 100795 SPy0309 SPy0310     TRUE 0.966 0.000 0.149 NA   0.089
 100795 100796 SPy0310 SPy0312     TRUE 0.956 0.000 0.085 NA   -0.182
 100796 100797 SPy0312 SPy0314     FALSE 0.121 254.000 0.094 NA   -0.344
 100797 100798 SPy0314 SPy0315     FALSE 0.034 352.000 0.000 NA   -0.770
 100798 100799 SPy0315 SPy0316     TRUE 0.919 -10.000 0.000 NA   -0.412
 100799 100800 SPy0316 SPy0317     FALSE 0.089 203.000 0.000 NA   0.648
 100800 100801 SPy0317 SPy0319     FALSE 0.025 329.000 0.000 NA N 0.417
 100801 100802 SPy0319 SPy0320     FALSE 0.150 250.000 0.000 NA Y -0.707
 100802 100803 SPy0320 SPy0321     TRUE 0.991 32.000 0.938 1.000 Y 0.027
 100806 100807 SPy0326 SPy0327   ntpJ TRUE 0.997 10.000 0.490 0.005 Y -0.498
 100807 100808 SPy0327 SPy0329 ntpJ gidB FALSE 0.280 70.000 0.006 1.000 N 0.063
 100809 100810 SPy0330 SPy0331 lemA htpX TRUE 0.854 47.000 0.222 NA   0.822
 100810 100811 SPy0331 SPy0334 htpX   FALSE 0.086 231.000 0.002 NA   -0.779
 100811 100812 SPy0334 SPy0337   csrS FALSE 0.019 959.000 0.000 NA   0.697
 100812 100813 SPy0337 SPy0338 csrS   FALSE 0.076 215.000 0.007 NA N 0.085
 100813 100814 SPy0338 SPy0339     TRUE 0.949 -16.000 0.109 NA N -0.201
 100814 100815 SPy0339 SPy0340   dnaI TRUE 0.997 1.000 0.817 NA Y 0.111
 100815 100816 SPy0340 SPy0341 dnaI pgdA TRUE 0.446 63.000 0.008 1.000   -0.471
 100816 100817 SPy0341 SPy0342 pgdA snf FALSE 0.080 207.000 0.004 1.000   -0.122
 100817 100818 SPy0342 SPy0343 snf   FALSE 0.165 243.000 0.151 NA   -0.206
 100818 100819 SPy0343 SPy0345   murC TRUE 0.729 40.000 0.013 NA   0.147
 100819 100820 SPy0345 SPy0346 murC   TRUE 0.623 46.000 0.014 1.000   0.299
 100820 100821 SPy0346 SPy0348     TRUE 0.423 112.000 0.120 NA   -0.521
 100821 100822 SPy0348 SPy0349   greA TRUE 0.887 25.000 0.079 NA   -0.475
 100823 100824 SPy0351 SPy0352     TRUE 0.433 82.000 0.154 1.000 N -0.596
 100824 2137385 SPy0352 SPy_0355     FALSE 0.146 158.000 0.000 NA   NA
 100825 100826 SPy0356 SPy0357     TRUE 0.702 39.000 0.043 1.000   -0.713
 100826 100827 SPy0357 SPy0358     TRUE 0.939 15.000 0.123 NA   -0.031
 100827 100828 SPy0358 SPy0359     FALSE 0.113 178.000 0.000 NA   -0.820
 100828 100829 SPy0359 SPy0361   glr FALSE 0.169 178.000 0.014 NA   -0.423
 100829 100830 SPy0361 SPy0362 glr   TRUE 0.911 -3.000 0.034 1.000 N -0.003
 100830 100831 SPy0362 SPy0363     TRUE 0.943 -21.000 0.085 1.000   0.108
 100831 100832 SPy0363 SPy0364     TRUE 0.946 -3.000 0.065 1.000   -0.356
 100832 100833 SPy0364 SPy0365     TRUE 0.955 -3.000 0.111 1.000   -0.451
 100833 100834 SPy0365 SPy0366     TRUE 0.941 0.000 0.017 NA   -0.395
 100834 100835 SPy0366 SPy0367     TRUE 0.993 -3.000 0.570 NA   -0.375
 100835 100836 SPy0367 SPy0369     TRUE 0.464 123.000 0.224 NA N 0.072
 100836 100837 SPy0369 SPy0370     TRUE 0.940 0.000 0.014 NA   -0.124
 100837 100838 SPy0370 SPy0371     FALSE 0.143 178.000 0.002 NA   -0.427
 100838 100839 SPy0371 SPy0373     FALSE 0.039 311.000 0.000 NA   -0.730
 100839 100840 SPy0373 SPy0374     TRUE 0.991 2.000 0.600 NA   0.522
 100840 100841 SPy0374 SPy0376     FALSE 0.061 293.000 0.050 1.000   0.248
 100841 100842 SPy0376 SPy0377     TRUE 0.934 39.000 0.408 NA   NA
 100842 100843 SPy0377 SPy0378   hlyX FALSE 0.281 133.000 0.023 NA   NA
 100843 100844 SPy0378 SPy0379 hlyX pflC TRUE 0.466 78.000 0.028 NA   -0.115
 100844 100845 SPy0379 SPy0380 pflC   FALSE 0.160 131.000 0.023 1.000 N -0.396
 100845 100846 SPy0380 SPy0382     TRUE 0.464 76.000 0.015 NA   0.875
 100847 100848 SPy0383 SPy0384 fhuG fhuB.1 TRUE 0.981 73.000 0.857 0.041 Y -0.234
 100848 100849 SPy0384 SPy0385 fhuB.1 fhuD TRUE 0.971 11.000 0.179 1.000 Y -0.143
 100849 100850 SPy0385 SPy0386 fhuD fhuA TRUE 0.993 26.000 0.889 1.000 Y 0.300
 100850 100851 SPy0386 SPy0388 fhuA murE FALSE 0.066 246.000 0.062 1.000 N NA
 100852 100853 SPy0390 SPy0392   upp FALSE 0.118 168.000 0.002 1.000   -0.919
 100853 100854 SPy0392 SPy0393 upp   TRUE 0.906 -31.000 0.000 NA   NA
 100854 100855 SPy0393 SPy0395   clpP FALSE 0.219 121.000 0.000 NA   NA
 100855 100856 SPy0395 SPy0397 clpP   FALSE 0.046 492.000 0.065 NA   -0.862
 100856 100857 SPy0397 SPy0399   tmk FALSE 0.062 249.000 0.000 NA   0.536
 100857 100858 SPy0399 SPy0400 tmk   TRUE 0.939 18.000 0.254 1.000 N -0.765
 100858 100859 SPy0400 SPy0401     TRUE 0.972 19.000 0.372 NA   -0.785
 100859 100860 SPy0401 SPy0405     FALSE 0.092 405.000 0.183 NA   0.009
 100860 100861 SPy0405 SPy0406     TRUE 0.924 5.000 0.043 NA   0.773
 100861 100862 SPy0406 SPy0407     TRUE 0.817 27.000 0.005 NA   -0.804
 100866 100867 SPy0414 SPy0416 lctO prtS FALSE 0.037 263.000 0.000 1.000   0.005
 100867 100868 SPy0416 SPy0421 prtS   FALSE 0.019 771.000 0.000 NA   -0.390
 100868 100869 SPy0421 SPy0422   metS FALSE 0.064 240.000 0.000 NA   -0.522
 100869 100870 SPy0422 SPy0425 metS nrdF.1 FALSE 0.009 495.000 0.000 1.000 N -0.274
 100870 100871 SPy0425 SPy0426 nrdF.1 nrdI TRUE 0.995 4.000 0.643 NA Y 0.941
 100871 100872 SPy0426 SPy0427 nrdI nrdE.1 TRUE 0.998 -33.000 1.000 NA Y 0.350
 100879 100880 SPy0436 SPy0437 speJ   FALSE 0.063 248.000 0.000 NA   0.990
 100881 100882 SPy0439 SPy0440     TRUE 0.995 -7.000 0.710 NA   0.783
 100882 100883 SPy0440 SPy0441     TRUE 0.441 76.000 0.067 1.000   -0.888
 100883 100884 SPy0441 SPy0442     FALSE 0.026 333.000 0.000 1.000   0.456
 100884 100885 SPy0442 SPy0443   gcaD FALSE 0.075 173.000 0.002 1.000 N -0.072
 100885 100886 SPy0443 SPy0444 gcaD   TRUE 0.679 31.000 0.015 1.000 N 0.322
 100886 100887 SPy0444 SPy0446     TRUE 0.945 0.000 0.025 NA   0.846
 100887 100888 SPy0446 SPy0447   pfs TRUE 0.895 20.000 0.041 NA   0.325
 100888 100889 SPy0447 SPy0448 pfs   FALSE 0.154 151.000 0.000 NA   -0.594
 100891 100892 SPy0453 SPy0454 mtsA mtsB TRUE 0.782 64.000 0.135 1.000 Y -0.532
 100892 100893 SPy0454 SPy0456 mtsB mtsC TRUE 0.976 1.000 0.130 1.000 Y -0.812
 100897 100898 SPy0460 SPy0461 rplK rplA TRUE 0.966 106.000 0.838 0.041 Y 0.892
 100898 100899 SPy0461 SPy0462 rplA pyrH FALSE 0.022 323.000 0.002 1.000 N 0.820
 100899 100900 SPy0462 SPy0463 pyrH rrf TRUE 0.964 29.000 0.626 1.000 N 0.862
 100900 100901 SPy0463 SPy0464 rrf   FALSE 0.253 109.000 0.012 1.000   0.861
 100901 100902 SPy0464 SPy0466   msrA.2 TRUE 0.391 73.000 0.016 1.000   -0.903
 100902 100903 SPy0466 SPy0467 msrA.2   TRUE 0.951 -3.000 0.080 1.000   0.992
 100903 100904 SPy0467 SPy0469     FALSE 0.173 156.000 0.023 1.000   -0.068
 100904 100905 SPy0469 SPy0470     FALSE 0.039 314.000 0.000 NA   -0.534
 100905 100906 SPy0470 SPy0471   phoH FALSE 0.177 159.000 0.004 NA   -0.146
 100906 100907 SPy0471 SPy0472 phoH   TRUE 0.568 46.000 0.005 NA N -0.341
 100907 100908 SPy0472 SPy0473     FALSE 0.178 159.000 0.003 NA   0.345
 100908 100909 SPy0473 SPy0475   dgk TRUE 0.947 -19.000 0.035 NA   0.186
 100909 100910 SPy0475 SPy0476 dgk era FALSE 0.288 120.000 0.063 1.000   -0.036
 100910 100911 SPy0476 SPy0477 era   TRUE 0.828 20.000 0.007 1.000   0.127
 100913 100914 SPy0479 SPy0480     TRUE 0.984 15.000 0.500 NA   0.243
 100915 100916 SPy0484 SPy0486     FALSE 0.046 294.000 0.000 NA   NA
 100916 100917 SPy0486 SPy0488     FALSE 0.024 493.000 0.000 NA   0.522
 100917 100918 SPy0488 SPy0489     TRUE 0.592 45.000 0.000 NA   -0.878
 100920 100921 SPy0496 SPy0497 mutR fpg FALSE 0.124 172.000 0.004 1.000   0.673
 100921 100922 SPy0497 SPy0498 fpg   TRUE 0.924 -3.000 0.066 1.000 N -0.628
 100922 100923 SPy0498 SPy0500     FALSE 0.067 190.000 0.000 1.000   -0.933
 100923 100924 SPy0500 SPy0501     FALSE 0.211 122.000 0.007 1.000   -0.467
 100924 100925 SPy0501 SPy0502     FALSE 0.227 189.000 0.007 0.063 N 0.280
 100925 100926 SPy0502 SPy0503     FALSE 0.272 94.000 0.064 1.000 N 0.603
 100926 100927 SPy0503 SPy0504     TRUE 0.976 3.000 0.143 0.036 N 0.653
 100927 100928 SPy0504 SPy0505     TRUE 0.933 6.000 0.000 1.000 Y 0.066
 100929 100930 SPy0506 SPy0507 pcp   TRUE 0.870 50.000 0.300 NA   0.080
 100930 100931 SPy0507 SPy0508     TRUE 0.996 0.000 0.939 NA   -0.336
 100931 100932 SPy0508 SPy0510     FALSE 0.079 211.000 0.000 NA   -0.538
 100932 100933 SPy0510 SPy0511   gloA FALSE 0.177 145.000 0.012 NA N -0.204
 100933 100934 SPy0511 SPy0512 gloA   TRUE 0.815 11.000 0.019 1.000 N -0.561
 100934 100935 SPy0512 SPy0513   pepQ TRUE 0.548 49.000 0.053 1.000 N -0.467
 100936 100937 SPy0514 SPy0515 ccpA   FALSE 0.167 131.000 0.033 1.000 N -0.299
 100937 100938 SPy0515 SPy0516     TRUE 0.997 2.000 0.413 0.012 Y -0.235
 100938 100939 SPy0516 SPy0517   thrS FALSE 0.010 422.000 0.000 1.000 N -0.048
 100939 100940 SPy0517 SPy0518 thrS   FALSE 0.187 141.000 0.012 1.000   0.452
 100940 100941 SPy0518 SPy0519     TRUE 0.888 2.000 0.000 NA   -0.776
 100941 100942 SPy0519 SPy0521     TRUE 0.935 2.000 0.042 NA   -0.234
 100942 100943 SPy0521 SPy0524     FALSE 0.019 745.000 0.000 NA   -0.824
 100943 100944 SPy0524 SPy0526     TRUE 0.995 -43.000 0.576 1.000 Y -0.960
 100944 100945 SPy0526 SPy0527     TRUE 0.368 95.000 0.030 NA   -0.886
 100945 100946 SPy0527 SPy0528   vicR FALSE 0.193 162.000 0.013 NA   -0.687
 100946 100947 SPy0528 SPy0529 vicR vicK TRUE 0.998 -7.000 0.597 0.056 Y -0.752
 100947 100948 SPy0529 SPy0530 vicK vicX TRUE 0.900 4.000 0.038 1.000   -0.736
 100948 100949 SPy0530 SPy0531 vicX acpA FALSE 0.023 444.000 0.002 1.000   -0.973
 100949 100950 SPy0531 SPy0532 acpA smc TRUE 0.925 1.000 0.120 1.000 N 0.374
 100952 100953 SPy0534 SPy0535 aroE.2   TRUE 0.880 -3.000 0.000 NA N -0.626
 100953 100954 SPy0535 SPy0536     TRUE 0.889 2.000 0.000 NA   -0.496
 100954 100955 SPy0536 SPy0537     TRUE 0.921 -7.000 0.000 NA   -0.961
 100955 100956 SPy0537 SPy0538     TRUE 0.851 10.000 0.000 NA   0.313
 100956 100957 SPy0538 SPy0539     TRUE 0.916 -16.000 0.000 NA   NA
 100957 100958 SPy0539 SPy0540     TRUE 0.511 55.000 0.000 NA   NA
 100958 100959 SPy0540 SPy0542     FALSE 0.020 693.000 0.000 NA   0.912
 100959 100960 SPy0542 SPy0543     FALSE 0.222 85.000 0.000 1.000   -0.086
 100961 100962 SPy0544 SPy0545     TRUE 0.989 -10.000 0.400 NA   NA
 100962 100963 SPy0545 SPy0546     FALSE 0.295 85.000 0.000 NA   -0.729
 100963 100964 SPy0546 SPy0547     TRUE 0.923 -9.000 0.000 NA   NA
 100964 100965 SPy0547 SPy0549     TRUE 0.988 0.000 0.429 NA   NA
 100966 100967 SPy0550 SPy0552     TRUE 0.983 -3.000 0.273 NA   0.176
 100967 100968 SPy0552 SPy0553     TRUE 0.975 19.000 0.400 NA   NA
 100968 100969 SPy0553 SPy0555     FALSE 0.244 105.000 0.000 NA   NA
 100969 100970 SPy0555 SPy0556     TRUE 0.622 42.000 0.000 NA   0.605
 100970 100971 SPy0556 SPy0558     FALSE 0.027 414.000 0.000 NA   -0.561
 100971 100972 SPy0558 SPy0559     TRUE 0.729 24.000 0.000 1.000   0.994
 100972 100973 SPy0559 SPy0560     TRUE 0.782 -22.000 0.000 1.000 N -0.322
 100973 2137387 SPy0560 SPy_0561     TRUE 0.903 -178.000 0.000 NA   NA
 2137387 2137388 SPy_0561 SPy_0563     TRUE 0.860 13.000 0.000 NA   NA
 100975 100976 SPy0567 SPy0568     TRUE 0.992 4.000 0.375 0.020   -0.695
 100976 100977 SPy0568 SPy0569   ftsY TRUE 0.971 0.000 0.007 0.082   -0.628
 100979 100980 SPy0571 SPy0572 licT   TRUE 0.969 2.000 0.259 1.000   0.126
 100980 100981 SPy0572 SPy0574   bglA TRUE 0.980 19.000 0.318 1.000 Y -0.297
 100982 100983 SPy0575 SPy0576     TRUE 0.996 0.000 0.841 NA   -0.650
 100986 100987 SPy0580 SPy0581     TRUE 0.979 -13.000 0.215 NA   NA
 100987 100988 SPy0581 SPy0583     TRUE 0.589 64.000 0.051 NA   NA
 100988 100989 SPy0583 SPy_0584   ptsK FALSE 0.152 305.000 0.017 NA Y NA
 100989 100990 SPy_0584 SPy0585 ptsK lgt TRUE 0.986 -3.000 0.494 1.000 N NA
 100990 100991 SPy0585 SPy0587 lgt   TRUE 0.901 22.000 0.079 NA   0.113
 100991 100992 SPy0587 SPy0588     TRUE 0.979 -7.000 0.206 NA   0.589
 100994 100995 SPy0590 SPy0591     TRUE 0.891 91.000 0.156 0.003 Y -0.643
 100995 100996 SPy0591 SPy0593     FALSE 0.080 210.000 0.000 NA   -0.294
 100999 101000 SPy0598 SPy0599     FALSE 0.058 341.000 0.018 NA   0.030
 101000 101001 SPy0599 SPy0600     TRUE 0.358 91.000 0.010 NA   0.271
 101001 101002 SPy0600 SPy0601     FALSE 0.083 269.000 0.016 NA   0.345
 101003 101004 SPy0603 SPy0604     TRUE 0.987 -16.000 0.375 NA   NA
 101005 101006 SPy0605 SPy0606 bsaA pepF TRUE 0.920 -7.000 0.059 1.000 N -0.791
 101007 101008 SPy0608 SPy0609 ppc ftsW FALSE 0.147 140.000 0.028 1.000 N -0.914
 101008 101009 SPy0609 SPy0611 ftsW tufA FALSE 0.012 354.000 0.000 1.000 N -0.838
 101009 101010 SPy0611 SPy0613 tufA tpi FALSE 0.038 241.000 0.003 1.000 N 0.069
 101011 101012 SPy0615 SPy0616 murN murM TRUE 0.996 -13.000 0.200 0.012 Y -0.448
 101012 101013 SPy0616 SPy0617 murM   TRUE 0.988 0.000 0.500 1.000   -0.496
 101013 101014 SPy0617 SPy0619     FALSE 0.160 151.000 0.000 NA   NA
 101014 101015 SPy0619 SPy0621     TRUE 0.375 72.000 0.000 NA   NA
 101016 101017 SPy0622 SPy0623   pacL FALSE 0.070 231.000 0.000 NA   0.565
 101018 101019 SPy0627 SPy0628 regR   TRUE 0.898 64.000 0.562 NA   0.665
 101019 101020 SPy0628 SPy0629   agaD TRUE 0.741 87.000 0.375 NA   -0.704
 101020 101021 SPy0629 SPy0630 agaD agaW TRUE 0.999 -13.000 0.933 0.021 Y -0.632
 101021 101022 SPy0630 SPy0631 agaW agaV TRUE 0.998 19.000 0.933 0.021 Y 0.012
 101022 101023 SPy0631 SPy0632 agaV ugl TRUE 0.858 36.000 0.200 1.000   0.207
 101023 101024 SPy0632 SPy0634 ugl agaF TRUE 0.949 0.000 0.120 1.000   -0.589
 101025 101026 SPy0636 SPy0637 idnO   TRUE 0.892 25.000 0.197 1.000 N 0.649
 101026 101027 SPy0637 SPy0638   kdgK TRUE 0.928 29.000 0.094 1.000 Y 0.794
 101027 101028 SPy0638 SPy0639 kdgK kgdA TRUE 0.974 5.000 0.167 1.000 Y 0.192
 101028 101029 SPy0639 SPy0640 kgdA   FALSE 0.117 290.000 0.000 0.049   0.085
 101029 101030 SPy0640 SPy0642     FALSE 0.014 641.000 0.000 1.000   0.435
 101030 101031 SPy0642 SPy0643   prfB FALSE 0.102 154.000 0.006 1.000 N 0.561
 101031 101032 SPy0643 SPy0644 prfB ftsE TRUE 0.833 19.000 0.053 1.000 N NA
 101032 101033 SPy0644 SPy0645 ftsE ftsX TRUE 0.993 -16.000 0.431 1.000 Y NA
 2137389 101035 SPy_0647 SPy0649   dinG FALSE 0.235 111.000 0.000 NA   NA
 101035 101036 SPy0649 SPy0650 dinG aspC FALSE 0.014 335.000 0.000 1.000 N 0.549
 101036 101037 SPy0650 SPy0651 aspC asnS TRUE 0.827 21.000 0.068 1.000 N 0.089
 101037 101038 SPy0651 SPy0652 asnS   FALSE 0.027 414.000 0.000 NA   -0.520
 101038 101039 SPy0652 SPy0653     TRUE 0.980 -3.000 0.214 NA   0.126
 101039 101040 SPy0653 SPy0654     TRUE 0.990 -3.000 0.470 NA   -0.394
 101041 101042 SPy0655 SPy0656 int1   FALSE 0.212 121.000 0.000 NA   -0.304
 101042 101043 SPy0656 SPy0657     TRUE 0.772 27.000 0.000 NA   0.395
 101044 101045 SPy0658 SPy0659     TRUE 0.394 69.000 0.000 NA   NA
 101045 101046 SPy0659 SPy0660     TRUE 0.893 2.000 0.000 NA   NA
 101046 101047 SPy0660 SPy0661     TRUE 0.992 -3.000 0.500 NA   NA
 101047 101048 SPy0661 SPy0663     TRUE 0.911 0.000 0.000 NA   NA
 101048 101049 SPy0663 SPy0664     TRUE 0.862 15.000 0.000 NA   NA
 101049 101050 SPy0664 SPy0665     TRUE 0.639 40.000 0.000 NA   0.632
 101050 101051 SPy0665 SPy0666     TRUE 0.992 2.000 0.708 NA   -0.717
 101051 101052 SPy0666 SPy0667     TRUE 0.807 22.000 0.000 NA   -0.555
 101052 101053 SPy0667 SPy0669     TRUE 0.909 0.000 0.000 NA   0.001
 101053 101054 SPy0669 SPy0670     TRUE 0.853 10.000 0.000 NA   NA
 101054 101055 SPy0670 SPy0671     TRUE 0.966 -10.000 0.111 NA   NA
 101055 101056 SPy0671 SPy0672     FALSE 0.049 278.000 0.000 NA   0.202
 101056 101057 SPy0672 SPy0673     TRUE 0.952 -7.000 0.018 NA   0.088
 101057 101058 SPy0673 SPy0674     TRUE 0.954 -3.000 0.037 NA   0.452
 101058 101059 SPy0674 SPy0676     FALSE 0.050 277.000 0.000 NA   0.003
 101059 101060 SPy0676 SPy0677     FALSE 0.051 273.000 0.000 NA   -0.286
 101060 101061 SPy0677 SPy0679     FALSE 0.041 310.000 0.000 NA   0.702
 101061 101062 SPy0679 SPy0680     FALSE 0.083 343.000 0.118 NA   -0.067
 101062 101063 SPy0680 SPy0681     TRUE 0.604 83.000 0.182 NA   -0.152
 101063 101064 SPy0681 SPy0682     TRUE 0.952 14.000 0.167 NA   0.994
 101064 101065 SPy0682 SPy0683     TRUE 0.987 5.000 0.567 NA   -0.159
 101065 101066 SPy0683 SPy0684     TRUE 0.909 0.000 0.000 NA   0.007
 101066 101067 SPy0684 SPy0685     FALSE 0.295 87.000 0.000 NA   0.765
 101067 101068 SPy0685 SPy0686     FALSE 0.195 126.000 0.000 NA   -0.880
 101068 101069 SPy0686 SPy0688     TRUE 0.875 4.000 0.000 NA   -0.143
 101069 101070 SPy0688 SPy0689     TRUE 0.518 54.000 0.000 NA   0.922
 101070 101071 SPy0689 SPy0690     TRUE 0.986 -10.000 0.333 NA   NA
 101071 101072 SPy0690 SPy0691     TRUE 0.988 0.000 0.438 NA   NA
 101072 101073 SPy0691 SPy0693     TRUE 0.977 -3.000 0.188 NA   NA
 101073 101074 SPy0693 SPy0694     TRUE 0.997 0.000 1.000 NA   0.743
 101074 101075 SPy0694 SPy0695     TRUE 0.874 129.000 1.000 NA   -0.062
 101075 101076 SPy0695 SPy0696     TRUE 0.953 4.000 0.150 NA   0.797
 101076 101077 SPy0696 SPy0697     TRUE 0.918 -10.000 0.000 NA   -0.414
 101077 101078 SPy0697 SPy0698     TRUE 0.922 -3.000 0.000 NA   0.422
 101078 101079 SPy0698 SPy0700     TRUE 0.978 -3.000 0.200 NA   -0.261
 101079 101080 SPy0700 SPy0701   hylP1 TRUE 0.923 -3.000 0.000 NA   NA
 101080 101081 SPy0701 SPy0702 hylP1   TRUE 0.862 15.000 0.000 NA   NA
 101081 101082 SPy0702 SPy0703     TRUE 0.848 12.000 0.000 NA   -0.752
 101082 101083 SPy0703 SPy0705     TRUE 0.879 3.000 0.000 NA   -0.740
 101083 101084 SPy0705 SPy0706     TRUE 0.851 10.000 0.000 NA   0.450
 101084 101085 SPy0706 SPy0707     TRUE 0.922 -3.000 0.000 NA   0.202
 101085 101086 SPy0707 SPy0710     FALSE 0.219 116.000 0.000 NA   -0.175
 101087 101088 SPy0711 SPy0712 speC mf2 FALSE 0.163 111.000 0.000 1.000   -0.533
 101089 101090 SPy0713 SPy0714 pepD adcA TRUE 0.342 152.000 0.250 1.000 N 0.483
 101090 101091 SPy0714 SPy0715 adcA   FALSE 0.190 148.000 0.091 1.000 N 0.297
 101091 101092 SPy0715 SPy0716   agaS TRUE 0.909 19.000 0.178 1.000 N 0.160
 101093 101094 SPy0717 SPy0720 rpmE   FALSE 0.263 115.000 0.020 1.000   0.869
 101095 101096 SPy0721 SPy0722     FALSE 0.202 176.000 0.167 1.000 N 0.030
 101096 101097 SPy0722 SPy0723     TRUE 0.936 -7.000 0.094 1.000 N 0.123
 101097 101098 SPy0723 SPy0724   rplS FALSE 0.152 115.000 0.006 1.000 N -0.137
 101098 398234 SPy0724 SPy_t38 rplS tRNA-Arg FALSE 0.064 247.000 0.000 NA   NA
 101099 101100 SPy0726 SPy0727   gyrB TRUE 0.910 1.000 0.013 1.000   0.600
 101100 101101 SPy0727 SPy0728 gyrB   FALSE 0.023 368.000 0.011 1.000 N -0.234
 101104 101105 SPy0732 SPy0733     TRUE 0.561 49.000 0.000 NA   -0.148
 101105 2137391 SPy0733 SPy_0735     FALSE 0.033 367.000 0.000 NA   NA
 101106 101107 SPy0737 SPy0738 epf sagA FALSE 0.019 865.000 0.000 NA   -0.163
 101107 101108 SPy0738 SPy0739 sagA sagB FALSE 0.070 222.000 0.000 NA   -0.617
 101108 101109 SPy0739 SPy0740 sagB sagC TRUE 0.978 -3.000 0.200 NA   0.040
 101109 101110 SPy0740 SPy0741 sagC   TRUE 0.965 20.000 0.318 NA   -0.209
 101110 101111 SPy0741 SPy0742     TRUE 0.963 -25.000 0.136 NA   0.745
 101111 101112 SPy0742 SPy0743     TRUE 0.995 -3.000 0.750 NA   -0.065
 101112 101113 SPy0743 SPy0744     TRUE 0.987 23.000 0.750 NA   0.446
 101113 101114 SPy0744 SPy0745   sagH TRUE 0.975 9.000 0.500 1.000 N -0.912
 101114 101115 SPy0745 SPy0746 sagH   TRUE 0.996 -3.000 0.160 0.008 Y -0.516
 101115 101116 SPy0746 SPy0747     FALSE 0.015 571.000 0.000 1.000   0.749
 101116 101117 SPy0747 SPy0749     FALSE 0.048 278.000 0.000 NA   -0.612
 101117 101118 SPy0749 SPy0751   lig FALSE 0.135 194.000 0.010 NA   0.207
 101118 101119 SPy0751 SPy0752 lig   TRUE 0.818 14.000 0.013 1.000 N -0.060
 101119 101120 SPy0752 SPy0754   atpE FALSE 0.019 393.000 0.000 1.000   -0.318
 101120 101121 SPy0754 SPy0755 atpE atpB TRUE 0.961 35.000 0.189 0.009   -0.348
 101121 101122 SPy0755 SPy0756 atpB atpF TRUE 0.986 18.000 0.032 0.009 Y -0.473
 101122 101123 SPy0756 SPy0757 atpF atpH TRUE 0.996 0.000 0.222 0.009 Y -0.853
 101123 101124 SPy0757 SPy0758 atpH atpA TRUE 0.999 16.000 0.864 0.009 Y -0.170
 101124 101125 SPy0758 SPy0759 atpA atpG TRUE 0.999 16.000 0.846 0.009 Y 0.431
 101125 101126 SPy0759 SPy0760 atpG atpD TRUE 0.936 162.000 0.724 0.009 Y -0.534
 101126 101127 SPy0760 SPy0761 atpD atpC TRUE 0.999 13.000 0.837 0.009 Y 0.389
 101127 101128 SPy0761 SPy0762 atpC   FALSE 0.093 266.000 0.039 NA   NA
 101128 101129 SPy0762 SPy0763     TRUE 0.787 65.000 0.279 NA   NA
 101129 101130 SPy0763 SPy0764   epuA TRUE 0.945 4.000 0.110 NA   NA
 101130 101131 SPy0764 SPy0766 epuA endA TRUE 0.614 94.000 0.237 NA   NA
 101131 101132 SPy0766 SPy_0768 endA pheS FALSE 0.033 283.000 0.000 1.000   NA
 101132 101133 SPy_0768 SPy0769 pheS pheT TRUE 0.885 210.000 0.574 0.001 Y NA
 101133 101134 SPy0769 SPy0770 pheT   FALSE 0.146 110.000 0.002 1.000 N 0.294
 101134 101135 SPy0770 SPy0771     TRUE 0.943 -7.000 0.006 NA   -0.045
 101135 101136 SPy0771 SPy0772     TRUE 0.565 73.000 0.095 NA   0.647
 101136 101137 SPy0772 SPy0773     TRUE 0.975 10.000 0.444 1.000   0.268
 101139 101140 SPy0776 SPy0777 rexB rexA TRUE 0.991 -3.000 0.070 0.061 Y 0.174
 101140 101141 SPy0777 SPy0778 rexA   FALSE 0.072 140.000 0.000 1.000 N 0.203
 101141 101142 SPy0778 SPy0779   rpsU FALSE 0.206 141.000 0.027 1.000   0.223
 101144 101145 SPy0781 SPy0782 dnaG rpoD TRUE 0.934 9.000 0.209 1.000 N -0.330
 101145 101146 SPy0782 SPy0783 rpoD   FALSE 0.113 236.000 0.044 NA   -0.653
 101146 101147 SPy0783 SPy0784   rmlD TRUE 0.387 138.000 0.152 NA   -0.380
 101147 101148 SPy0784 SPy0786 rmlD rgpAc TRUE 0.663 119.000 0.212 1.000 Y -0.038
 101148 101149 SPy0786 SPy0787 rgpAc rgpBc TRUE 0.984 -10.000 0.289 NA   0.811
 101149 101150 SPy0787 SPy0789 rgpBc rgpCc TRUE 0.889 45.000 0.289 NA   -0.016
 101150 101151 SPy0789 SPy0790 rgpCc rgpDc TRUE 0.787 0.000 0.000 1.000 N 0.053
 101151 101152 SPy0790 SPy0791 rgpDc rgpEc TRUE 0.784 25.000 0.000 NA   -0.701
 101152 101153 SPy0791 SPy0792 rgpEc rgpFc TRUE 0.988 -3.000 0.385 NA   -0.598
 101153 101154 SPy0792 SPy0793 rgpFc   TRUE 0.970 -3.000 0.000 NA Y -0.064
 101154 101155 SPy0793 SPy0794     FALSE 0.260 179.000 0.000 NA Y -0.763
 101155 101156 SPy0794 SPy0796     TRUE 0.990 2.000 0.568 NA   NA
 101156 101157 SPy0796 SPy0797     TRUE 0.954 -7.000 0.027 NA   NA
 101157 101158 SPy0797 SPy0798     TRUE 0.973 -19.000 0.182 NA   0.924
 101158 101159 SPy0798 SPy0799   pepT FALSE 0.266 94.000 0.000 NA   0.986
 101159 101160 SPy0799 SPy0800 pepT   TRUE 0.751 41.000 0.051 NA   -0.708
 101162 101163 SPy0802 SPy0803   cmk TRUE 0.867 15.000 0.012 1.000   -0.655
 101163 101164 SPy0803 SPy0804 cmk infC FALSE 0.101 162.000 0.010 1.000 N 0.424
 101164 101165 SPy0804 SPy0805 infC rpmI TRUE 0.974 42.000 0.652 1.000 Y -0.272
 101165 101166 SPy0805 SPy0806 rpmI rplT TRUE 0.991 59.000 0.928 0.028 Y -0.073
 101168 101169 SPy0808 SPy0809   aroD TRUE 0.957 -3.000 0.125 1.000   -0.774
 101169 101170 SPy0809 SPy0810 aroD aroF TRUE 0.811 94.000 0.004 0.003 Y -0.392
 101170 101171 SPy0810 SPy0811 aroF   TRUE 0.533 61.000 0.005 NA   0.805
 101171 101172 SPy0811 SPy0813   gor FALSE 0.102 221.000 0.010 NA   -0.219
 101173 101174 SPy0814 SPy0815 folC.2   TRUE 0.942 30.000 0.308 NA   -0.399
 101175 101176 SPy0816 SPy0817   thiI TRUE 0.905 34.000 0.349 1.000 N 0.350
 101176 101177 SPy0817 SPy0818 thiI   TRUE 0.579 38.000 0.014 1.000 N -0.634
 101177 101178 SPy0818 SPy0819   rplU FALSE 0.032 214.000 0.000 1.000 N 0.586
 101178 101179 SPy0819 SPy0821 rplU   TRUE 0.980 12.000 0.208 NA Y 0.144
 101179 101180 SPy0821 SPy0822   rpmA TRUE 0.964 28.000 0.203 NA Y -0.268
 101180 101181 SPy0822 SPy0824 rpmA   FALSE 0.014 348.000 0.000 1.000 N NA
 101181 101182 SPy0824 SPy0826   lsp TRUE 0.943 -3.000 0.119 1.000 N NA
 101182 101183 SPy0826 SPy0827 lsp   TRUE 0.930 -10.000 0.082 1.000 N 0.387
 101183 101184 SPy0827 SPy0830   pyrR FALSE 0.027 396.000 0.048 1.000 N -0.093
 101184 101185 SPy0830 SPy0831 pyrR pyrP TRUE 0.967 16.000 0.140 1.000 Y 0.475
 101185 101186 SPy0831 SPy0832 pyrP pyrB TRUE 0.760 61.000 0.064 1.000 Y 0.487
 101186 101187 SPy0832 SPy0833 pyrB carA TRUE 0.826 44.000 0.014 1.000 Y 0.398
 101187 101188 SPy0833 SPy0835 carA carB TRUE 0.623 226.000 0.117 0.001 Y 0.828
 101188 101189 SPy0835 SPy0836 carB   FALSE 0.069 207.000 0.017 1.000 N 0.059
 101189 101190 SPy0836 SPy0837     TRUE 0.985 24.000 0.923 1.000 N -0.781
 101190 101191 SPy0837 SPy0838     TRUE 0.996 12.000 0.923 1.000 Y -0.158
 101191 101192 SPy0838 SPy0839     FALSE 0.021 254.000 0.000 1.000 N -0.700
 101192 101193 SPy0839 SPy0840   rpsP FALSE 0.121 127.000 0.003 1.000 N -0.679
 101193 101194 SPy0840 SPy0841 rpsP   TRUE 0.971 10.000 0.385 1.000   -0.110
 101194 101195 SPy0841 SPy0843     FALSE 0.013 911.000 0.000 1.000   0.458
 101195 101196 SPy0843 SPy0844     TRUE 0.936 20.000 0.200 1.000   NA
 101198 101199 SPy0846 SPy0847     FALSE 0.031 215.000 0.000 1.000 N 0.433
 101199 101200 SPy0847 SPy0849   trmD TRUE 0.997 -10.000 0.672 1.000 Y -0.238
 101200 101201 SPy0849 SPy0850 trmD   TRUE 0.866 0.000 0.007 1.000 N 0.031
 101201 101202 SPy0850 SPy0851     FALSE 0.201 178.000 0.059 NA   0.164
 101202 101203 SPy0851 SPy0852   apbA TRUE 0.974 13.000 0.333 NA   -0.140
 101203 101204 SPy0852 SPy0853 apbA   FALSE 0.021 256.000 0.000 1.000 N -0.232
 101204 101205 SPy0853 SPy0854   fruB TRUE 0.997 -3.000 0.721 1.000 Y 0.403
 101205 101206 SPy0854 SPy0855 fruB   TRUE 0.997 -3.000 0.816 1.000 Y -0.603
 101206 101207 SPy0855 SPy0856   mur1.1 FALSE 0.236 93.000 0.022 1.000 N NA
 101207 101208 SPy0856 SPy0857 mur1.1 mur1.2 TRUE 0.883 152.000 0.333 0.003 Y NA
 2137392 101209 SPy_0858 SPy0861     FALSE 0.023 564.000 0.000 NA   NA
 2137393 101210 SPy_0863 SPy0864     FALSE 0.100 193.000 0.000 NA   NA
 101210 101211 SPy0864 SPy0865     TRUE 0.964 0.000 0.139 NA   -0.569
 101211 101212 SPy0865 SPy0866   papS FALSE 0.233 140.000 0.009 NA   0.082
 101212 101213 SPy0866 SPy0867 papS   TRUE 0.941 -3.000 0.056 1.000   -0.831
 101213 101214 SPy0867 SPy0870   fms FALSE 0.012 893.000 0.000 1.000   -0.123
 101216 101217 SPy0873 SPy0874     TRUE 0.992 3.000 0.800 1.000   -0.158
 101217 101218 SPy0874 SPy0875     TRUE 0.991 9.000 0.533 1.000 Y 0.301
 101218 101219 SPy0875 SPy0876   mvaK1 FALSE 0.019 279.000 0.000 1.000 N 0.170
 101219 101220 SPy0876 SPy0877 mvaK1 mvaD TRUE 0.997 -18.000 0.281 0.003 Y -0.276
 101220 101221 SPy0877 SPy0878 mvaD mvaK2 TRUE 0.998 -7.000 0.312 0.004 Y -0.065
 101221 101222 SPy0878 SPy0879 mvaK2   TRUE 0.936 -7.000 0.097 1.000 N -0.429
 101223 101224 SPy0880 SPy0881 mvaS.1 mvaS.2 TRUE 0.986 -13.000 0.183 1.000 Y 0.467
 101225 101226 SPy0882 SPy0883 thyA dyr TRUE 0.623 80.000 0.295 1.000 N 0.459
 101226 101227 SPy0883 SPy0884 dyr   TRUE 0.891 20.000 0.030 NA   -0.301
 101227 101228 SPy0884 SPy0885   clpX FALSE 0.263 130.000 0.012 NA   -0.071
 101228 101229 SPy0885 SPy0886 clpX   TRUE 0.882 10.000 0.043 1.000   -0.015
 101229 101230 SPy0886 SPy0887     FALSE 0.207 148.000 0.004 NA   0.368
 101232 101233 SPy0889 SPy0890 rpiA deoB TRUE 0.624 77.000 0.018 1.000 Y -0.060
 101233 101234 SPy0890 SPy0891 deoB arsC TRUE 0.868 19.000 0.108 1.000 N 0.059
 101234 101235 SPy0891 SPy0892 arsC punA TRUE 0.933 -16.000 0.108 1.000 N 0.433
 101235 101236 SPy0892 SPy0894 punA deoD2 FALSE 0.261 663.000 0.040 0.001 Y 0.171
 101236 101237 SPy0894 SPy0895 deoD2   TRUE 0.965 -7.000 0.107 NA   -0.702
 101239 101240 SPy0899 SPy0900   pyrF FALSE 0.050 277.000 0.000 NA   0.130
 101240 101241 SPy0900 SPy0901 pyrF pyrE TRUE 0.817 58.000 0.133 1.000 Y 0.981
 101241 101242 SPy0901 SPy0902 pyrE amiC FALSE 0.037 197.000 0.000 1.000 N 0.972
 101242 101243 SPy0902 SPy0903 amiC   TRUE 0.476 82.000 0.182 1.000 N -0.543
 101243 101244 SPy0903 SPy0904     TRUE 0.975 29.000 0.125 0.037 Y -0.425
 101244 101245 SPy0904 SPy0905   ung FALSE 0.156 133.000 0.025 1.000 N -0.798
 101245 101246 SPy0905 SPy0907 ung pyrC FALSE 0.133 132.000 0.009 1.000 N -0.671
 101248 101249 SPy0909 SPy0910 parE parC TRUE 0.963 91.000 0.552 0.003 Y 0.192
 101249 101250 SPy0910 SPy0911 parC bcaT FALSE 0.234 123.000 0.086 1.000 N -0.032
 101250 101251 SPy0911 SPy0912 bcaT   TRUE 0.635 64.000 0.095 NA   0.653
 101251 398235 SPy0912 SPy_t39   tRNA-Tyr TRUE 0.461 61.000 0.000 NA   NA
 398235 2137394 SPy_t39 SPy_t40 tRNA-Tyr   TRUE 0.534 52.000 0.000 NA   NA
 2137394 101252 SPy_t40 SPy0913     FALSE 0.211 123.000 0.000 NA   NA
 101252 398237 SPy0913 SPy_t41   tRNA-Arg FALSE 0.232 113.000 0.000 NA   NA
 101254 101255 SPy0915 SPy0916     TRUE 0.372 71.000 0.000 NA   -0.233
 101255 101256 SPy0916 SPy0917     TRUE 0.569 49.000 0.000 NA   0.969
 101256 101257 SPy0917 SPy0918     FALSE 0.063 237.000 0.056 1.000 N -0.648
 101259 101260 SPy0921 SPy0922 miaA   TRUE 0.411 73.000 0.027 1.000   -0.524
 101260 101261 SPy0922 SPy0923     TRUE 0.930 -7.000 0.014 1.000   -0.948
 101261 101262 SPy0923 SPy0924     TRUE 0.880 15.000 0.022 1.000   -0.815
 101262 101263 SPy0924 SPy0925     TRUE 0.941 0.000 0.074 1.000   0.294
 101263 101264 SPy0925 SPy0926   recJ TRUE 0.931 -3.000 0.016 1.000   -0.750
 101264 101265 SPy0926 SPy0927 recJ apt FALSE 0.204 151.000 0.128 1.000 N -0.726
 101265 101266 SPy0927 SPy0928 apt   FALSE 0.297 81.000 0.005 NA N -0.759
 101266 101267 SPy0928 SPy0929   nth TRUE 0.977 -3.000 0.007 NA Y -0.743
 101267 101268 SPy0929 SPy0930 nth   TRUE 0.443 72.000 0.006 NA   -0.830
 101268 101269 SPy0930 SPy0931     TRUE 0.983 -10.000 0.283 NA   -0.866
 101269 101270 SPy0931 SPy0932     TRUE 0.741 40.000 0.021 NA   -0.511
 101270 101271 SPy0932 SPy0933   cpsFO TRUE 0.479 58.000 0.059 1.000 N -0.086
 101271 101272 SPy0933 SPy0935 cpsFO cpsFP TRUE 0.981 0.000 0.149 1.000 Y 0.948
 101272 101273 SPy0935 SPy0936 cpsFP cpsFQ TRUE 0.428 244.000 0.350 1.000 Y -0.179
 101274 101275 SPy0937 SPy0938 int3   FALSE 0.139 254.000 0.000 0.059   -0.472
 101275 101276 SPy0938 SPy0939     TRUE 0.801 13.000 0.000 1.000   0.314
 101281 101282 SPy0945 SPy0946     TRUE 0.630 40.000 0.000 NA   -0.630
 101282 101283 SPy0946 SPy0947     TRUE 0.727 32.000 0.000 NA   NA
 101284 101285 SPy0948 SPy0949     FALSE 0.172 142.000 0.000 NA   0.814
 2137395 101286 SPy_0951 SPy0952     TRUE 0.893 2.000 0.000 NA   NA
 101286 101287 SPy0952 SPy0953     FALSE 0.025 483.000 0.000 NA   0.938
 101287 101288 SPy0953 SPy0954     TRUE 0.912 -19.000 0.000 NA   0.965
 101288 101289 SPy0954 SPy0956     FALSE 0.169 146.000 0.000 NA   0.892
 101289 101290 SPy0956 SPy0957     TRUE 0.490 56.000 0.000 NA   -0.874
 101290 101291 SPy0957 SPy0958     TRUE 0.883 3.000 0.000 NA   0.599
 101291 101292 SPy0958 SPy0959     TRUE 0.930 10.000 0.100 NA   0.475
 101292 101293 SPy0959 SPy0960     TRUE 0.877 4.000 0.000 NA   0.652
 101293 101294 SPy0960 SPy0961     FALSE 0.092 196.000 0.000 NA   -0.493
 101294 101295 SPy0961 SPy0962     TRUE 0.921 -3.000 0.000 NA   -0.310
 101295 101296 SPy0962 SPy0963     FALSE 0.122 177.000 0.000 NA   NA
 101296 101297 SPy0963 SPy0965     TRUE 0.534 52.000 0.000 NA   NA
 101297 101298 SPy0965 SPy0967     FALSE 0.026 450.000 0.000 NA   NA
 101298 101299 SPy0967 SPy0968     FALSE 0.040 315.000 0.000 NA   NA
 101299 101300 SPy0968 SPy0970     TRUE 0.836 19.000 0.000 NA   0.262
 101300 101301 SPy0970 SPy0971     TRUE 0.763 28.000 0.000 NA   0.326
 101301 101302 SPy0971 SPy0972     TRUE 0.981 -22.000 0.000 0.002   -0.565
 101302 2137396 SPy0972 SPy_0973     TRUE 0.855 12.000 0.000 NA   NA
 2137396 101303 SPy_0973 SPy0975     TRUE 0.916 -16.000 0.000 NA   NA
 101303 101304 SPy0975 SPy0976     TRUE 0.923 -9.000 0.000 NA   NA
 101304 101305 SPy0976 SPy0977     TRUE 0.468 60.000 0.000 NA   NA
 101305 101306 SPy0977 SPy0978     FALSE 0.282 90.000 0.000 NA   NA
 101306 101307 SPy0978 SPy0979     FALSE 0.197 129.000 0.000 NA   NA
 101307 101308 SPy0979 SPy0980     TRUE 0.889 2.000 0.000 NA   -0.314
 101308 101309 SPy0980 SPy0981     FALSE 0.225 112.000 0.000 NA   -0.635
 101309 101310 SPy0981 SPy0982     TRUE 0.924 10.000 0.077 NA   0.611
 101310 101311 SPy0982 SPy0984     TRUE 0.975 3.000 0.286 NA   0.186
 101311 101312 SPy0984 SPy0985     TRUE 0.850 12.000 0.000 NA   -0.360
 101312 101313 SPy0985 SPy0986     TRUE 0.968 12.000 0.286 NA   -0.057
 101313 101314 SPy0986 SPy0987     TRUE 0.984 -3.000 0.286 NA   0.350
 101314 101315 SPy0987 SPy0988     TRUE 0.970 -19.000 0.167 NA   -0.692
 101315 101316 SPy0988 SPy0989     TRUE 0.994 -3.000 0.667 NA   -0.904
 101316 101317 SPy0989 SPy0991     TRUE 0.392 97.000 0.062 NA   -0.286
 101317 101318 SPy0991 SPy0992     TRUE 0.653 60.000 0.093 NA   -0.691
 101318 101319 SPy0992 SPy0993     TRUE 0.903 42.000 0.312 NA   -0.315
 101319 101320 SPy0993 SPy0994     TRUE 0.857 15.000 0.000 NA   -0.323
 101320 101321 SPy0994 SPy0995     TRUE 0.707 33.000 0.000 NA   -0.333
 101321 101322 SPy0995 SPy0996     TRUE 0.997 -3.000 1.000 NA   NA
 101322 101323 SPy0996 SPy0997   hylP2 TRUE 0.911 0.000 0.000 NA   NA
 101323 101324 SPy0997 SPy0998 hylP2   TRUE 0.805 13.000 0.000 1.000   NA
 101324 101325 SPy0998 SPy0999     TRUE 0.862 14.000 0.000 NA   NA
 101325 101326 SPy0999 SPy1001     TRUE 0.885 3.000 0.000 NA   NA
 101326 101327 SPy1001 SPy1002     TRUE 0.851 11.000 0.000 NA   NA
 101327 101328 SPy1002 SPy1006   lys FALSE 0.044 294.000 0.000 NA   -0.506
 101328 101329 SPy1006 SPy1007 lys speI TRUE 0.396 274.000 0.667 1.000   0.216
 101329 101330 SPy1007 SPy1008 speI speH TRUE 0.997 26.000 1.000 0.006   -0.656
 101330 101331 SPy1008 SPy1010 speH mutX FALSE 0.014 604.000 0.000 1.000   -0.665
 101331 101332 SPy1010 SPy1011 mutX   TRUE 0.660 58.000 0.074 NA   -0.236
 101332 101333 SPy1011 SPy1012     TRUE 0.985 -10.000 0.324 NA   -0.807
 101335 101336 SPy1016 SPy1017     TRUE 0.868 5.000 0.000 NA   -0.288
 101336 101337 SPy1017 SPy1018     FALSE 0.117 177.000 0.000 NA   -0.562
 101337 101338 SPy1018 SPy1019     TRUE 0.996 -3.000 0.895 1.000   -0.338
 101338 101339 SPy1019 SPy1020     FALSE 0.105 204.000 0.026 1.000   -0.055
 101339 101340 SPy1020 SPy1022   estA TRUE 0.383 133.000 0.143 NA   -0.233
 101340 101341 SPy1022 SPy1024 estA   TRUE 0.894 30.000 0.150 NA   NA
 101341 101342 SPy1024 SPy1025     TRUE 0.716 46.000 0.029 NA   NA
 101342 101343 SPy1025 SPy1026   acoA FALSE 0.033 285.000 0.000 1.000   0.803
 101343 101344 SPy1026 SPy1028 acoA acoB TRUE 0.991 59.000 0.769 0.001 Y -0.557
 101344 101345 SPy1028 SPy1029 acoB acoC TRUE 0.564 185.000 0.077 0.045 Y NA
 101345 101346 SPy1029 SPy1031 acoC acoL FALSE 0.080 327.000 0.000 1.000 Y NA
 101349 101350 SPy1034 SPy1035     TRUE 0.994 0.000 0.796 1.000   -0.358
 101351 101352 SPy1036 SPy1037     TRUE 0.992 -3.000 0.502 NA   0.003
 101352 101353 SPy1037 SPy1038     TRUE 0.751 54.000 0.150 NA   -0.355
 101353 101354 SPy1038 SPy1039     FALSE 0.227 134.000 0.003 NA   0.565
 101354 101355 SPy1039 SPy1040   hemN TRUE 0.569 63.000 0.021 NA   -0.047
 101355 101356 SPy1040 SPy1042 hemN   FALSE 0.095 194.000 0.060 1.000 N -0.318
 101356 101357 SPy1042 SPy1043     TRUE 0.904 0.000 0.055 1.000 N -0.720
 101357 101358 SPy1043 SPy1044     TRUE 0.984 0.000 0.330 NA   -0.137
 101358 101359 SPy1044 SPy1046     FALSE 0.025 480.000 0.000 NA   -0.094
 101359 101360 SPy1046 SPy1047     TRUE 0.991 0.000 0.546 NA   -0.240
 101360 101361 SPy1047 SPy1048     TRUE 0.997 -3.000 0.876 NA   NA
 101361 101362 SPy1048 SPy1049     TRUE 0.982 -10.000 0.253 NA   NA
 101362 2137397 SPy1049 SPy_1052     FALSE 0.021 647.000 0.000 NA   NA
 11497900 101362   SPy1049     FALSE NA 103.000 0.000 NA   NA
 11640263 101362   SPy1049     FALSE NA 103.000 0.000 NA   NA
 11782655 101362   SPy1049     FALSE NA 103.000 0.000 NA   NA
 11497901 101362   SPy1049     FALSE NA 139.000 0.000 NA   NA
 11640264 101362   SPy1049     FALSE NA 139.000 0.000 NA   NA
 11782656 101362   SPy1049     FALSE NA 139.000 0.000 NA   NA
 11497902 101362   SPy1049     FALSE NA 169.000 0.000 NA   NA
 11640265 101362   SPy1049     FALSE NA 169.000 0.000 NA   NA
 11782657 101362   SPy1049     FALSE NA 169.000 0.000 NA   NA
 11497903 101362   SPy1049     FALSE NA 205.000 0.000 NA   NA
 11640266 101362   SPy1049     FALSE NA 205.000 0.000 NA   NA
 11782658 101362   SPy1049     FALSE NA 205.000 0.000 NA   NA
 11497904 101362   SPy1049     FALSE NA 235.000 0.000 NA   NA
 11640267 101362   SPy1049     FALSE NA 235.000 0.000 NA   NA
 11782659 101362   SPy1049     FALSE NA 235.000 0.000 NA   NA
 11497905 101362   SPy1049     FALSE NA 271.000 0.000 NA   NA
 11640268 101362   SPy1049     FALSE NA 271.000 0.000 NA   NA
 11782660 101362   SPy1049     FALSE NA 271.000 0.000 NA   NA
 11497906 101362   SPy1049     FALSE NA 301.000 0.000 NA   NA
 11640269 101362   SPy1049     FALSE NA 301.000 0.000 NA   NA
 11782661 101362   SPy1049     FALSE NA 301.000 0.000 NA   NA
 11497907 101362   SPy1049     FALSE NA 337.000 0.000 NA   NA
 11640270 101362   SPy1049     FALSE NA 337.000 0.000 NA   NA
 11782662 101362   SPy1049     FALSE NA 337.000 0.000 NA   NA
 11497908 101362   SPy1049     FALSE NA 367.000 0.000 NA   NA
 11640271 101362   SPy1049     FALSE NA 367.000 0.000 NA   NA
 11782663 101362   SPy1049     FALSE NA 367.000 0.000 NA   NA
 11497909 101362   SPy1049     FALSE NA 403.000 0.000 NA   NA
 11640272 101362   SPy1049     FALSE NA 403.000 0.000 NA   NA
 11782664 101362   SPy1049     FALSE NA 403.000 0.000 NA   NA
 11497910 101362   SPy1049     FALSE NA 433.000 0.000 NA   NA
 11640273 101362   SPy1049     FALSE NA 433.000 0.000 NA   NA
 11782665 101362   SPy1049     FALSE NA 433.000 0.000 NA   NA
 11497911 101362   SPy1049     FALSE NA 469.000 0.000 NA   NA
 11640274 101362   SPy1049     FALSE NA 469.000 0.000 NA   NA
 11782666 101362   SPy1049     FALSE NA 469.000 0.000 NA   NA
 11497912 101362   SPy1049     FALSE NA 499.000 0.000 NA   NA
 11640275 101362   SPy1049     FALSE NA 499.000 0.000 NA   NA
 11782667 101362   SPy1049     FALSE NA 499.000 0.000 NA   NA
 2137397 101363 SPy_1052 SPy1053   lepA FALSE 0.208 124.000 0.000 NA   NA
 101363 101364 SPy1053 SPy1054 lepA   FALSE 0.043 247.000 0.000 1.000   0.280
 101364 101365 SPy1054 SPy1055   csrA FALSE 0.073 186.000 0.000 1.000   0.298
 101365 101366 SPy1055 SPy1056 csrA   FALSE 0.164 115.000 0.000 1.000   0.498
 101366 101367 SPy1056 SPy1057     FALSE 0.058 207.000 0.000 1.000   -0.254
 101367 101368 SPy1057 SPy1058     TRUE 0.998 19.000 0.786 0.019 Y -0.619
 101368 101369 SPy1058 SPy1059     TRUE 0.995 35.000 0.778 0.023 Y NA
 101369 101370 SPy1059 SPy1060     TRUE 0.999 -3.000 0.778 0.023 Y NA
 101370 101371 SPy1060 SPy1061     TRUE 0.607 136.000 0.222 0.054 N 0.979
 101371 101372 SPy1061 SPy1062     TRUE 0.997 4.000 0.500 0.011 Y -0.369
 101372 101373 SPy1062 SPy1063     TRUE 0.831 69.000 0.571 1.000 N -0.221
 101373 101374 SPy1063 SPy1064     FALSE 0.247 97.000 0.000 NA   -0.388
 101374 101375 SPy1064 SPy1065     FALSE 0.037 335.000 0.000 NA   0.065
 101375 101376 SPy1065 SPy1066     TRUE 0.826 4.000 0.000 1.000   0.307
 101376 101377 SPy1066 SPy1067   gabD TRUE 0.604 95.000 0.044 0.044   -0.693
 101377 101378 SPy1067 SPy1068 gabD uvrC FALSE 0.102 102.000 0.000 1.000 N -0.770
 101378 101379 SPy1068 SPy1069 uvrC   FALSE 0.067 185.000 0.004 1.000 N 0.134
 101379 101380 SPy1069 SPy1070     FALSE 0.333 125.000 0.179 1.000 N -0.007
 101382 101383 SPy1072 SPy1073 rplJ rplL TRUE 0.988 65.000 0.884 0.026 Y -0.185
 101383 101384 SPy1073 SPy1075 rplL   FALSE 0.023 530.000 0.000 NA   0.039
 101384 101385 SPy1075 SPy1077     FALSE 0.122 175.000 0.000 NA   0.026
 101385 2137398 SPy1077 SPy_1078     TRUE 0.793 25.000 0.000 NA   NA
 2137398 101386 SPy_1078 SPy1080   srtI TRUE 0.861 9.000 0.000 NA   NA
 101386 101387 SPy1080 SPy1081 srtI srtR FALSE 0.157 151.000 0.000 NA   0.148
 101387 101388 SPy1081 SPy1082 srtR srtK TRUE 0.999 -7.000 0.741 0.011 Y -0.323
 101388 101389 SPy1082 SPy1083 srtK srtA FALSE 0.116 148.000 0.000 1.000   0.145
 101389 101390 SPy1083 SPy1084 srtA srtT FALSE 0.164 115.000 0.000 1.000   0.524
 101390 101391 SPy1084 SPy1085 srtT srtF TRUE 0.612 82.000 0.000 0.024   -0.377
 101391 101392 SPy1085 SPy1086 srtF srtE TRUE 0.866 6.000 0.000 NA   0.280
 101392 101393 SPy1086 SPy1087 srtE srtG TRUE 0.986 3.000 0.490 NA   NA
 101393 101394 SPy1087 SPy1088 srtG   FALSE 0.101 192.000 0.000 NA   NA
 101394 2137399 SPy1088 SPy_1092   int2 FALSE 0.024 491.000 0.000 NA   NA
 2137399 101395 SPy_1092 SPy1093 int2   FALSE 0.056 263.000 0.000 NA   NA
 101397 101398 SPy1096 SPy1097 folC.1 folE TRUE 0.953 11.000 0.057 1.000 Y 0.779
 101398 101399 SPy1097 SPy1098 folE folP TRUE 0.959 9.000 0.073 1.000 Y 0.259
 101399 101400 SPy1098 SPy1099 folP folQ TRUE 0.963 7.000 0.094 1.000 Y -0.815
 101400 101401 SPy1099 SPy1100 folQ folK TRUE 0.983 -3.000 0.142 1.000 Y -0.851
 101401 101402 SPy1100 SPy1101 folK murB FALSE 0.113 150.000 0.010 1.000 N -0.825
 101402 101403 SPy1101 SPy1102 murB potA TRUE 0.561 46.000 0.041 1.000 N -0.281
 101403 101404 SPy1102 SPy1103 potA potB TRUE 0.999 -16.000 0.928 0.035 Y -0.418
 101404 101405 SPy1103 SPy1104 potB potC TRUE 0.998 -3.000 0.492 0.035 Y 0.345
 101405 101406 SPy1104 SPy1105 potC potD TRUE 0.996 -7.000 0.253 0.035 Y -0.815
 101407 101408 SPy1106 SPy1107     TRUE 0.982 -19.000 0.154 1.000 Y -0.511
 101409 101410 SPy1109 SPy1110 malP   TRUE 0.974 31.000 0.432 1.000 Y 0.233
 101412 101413 SPy1113 SPy1114     FALSE 0.079 178.000 0.000 1.000   -0.539
 101413 101414 SPy1114 SPy1115     FALSE 0.142 163.000 0.071 1.000 N -0.791
 101414 101415 SPy1115 SPy1117     FALSE 0.254 159.000 0.071 NA   0.327
 101415 101416 SPy1117 SPy1118   radC TRUE 0.696 49.000 0.046 NA   -0.769
 101417 101418 SPy1119 SPy1120     TRUE 0.987 10.000 0.714 1.000   -0.021
 101418 101419 SPy1120 SPy1121     FALSE 0.120 252.000 0.083 NA   -0.377
 101419 101420 SPy1121 SPy1122     TRUE 0.973 -10.000 0.166 NA   -0.248
 101420 101421 SPy1122 SPy1123   prs TRUE 0.980 -3.000 0.089 1.000 Y 0.162
 101421 101422 SPy1123 SPy1124 prs   FALSE 0.311 140.000 0.145 1.000   0.292
 101423 101424 SPy1125 SPy1126     TRUE 0.993 -25.000 0.725 1.000   0.193
 101424 101425 SPy1126 SPy1127     TRUE 0.950 -3.000 0.150 1.000 N 0.142
 101425 101426 SPy1127 SPy1128   pta TRUE 0.883 4.000 0.067 1.000 N 0.285
 101426 2137400 SPy1128 SPy_1129 pta   FALSE 0.202 127.000 0.000 NA   NA
 101428 101429 SPy1133 SPy1134     TRUE 0.980 -13.000 0.382 1.000 N 0.022
 101429 101430 SPy1134 SPy1135     FALSE 0.019 278.000 0.000 1.000 N 0.729
 101430 101431 SPy1135 SPy1136   xpt FALSE 0.112 305.000 0.009 1.000 Y -0.645
 101431 101432 SPy1136 SPy1137 xpt   TRUE 0.972 0.000 0.046 1.000 Y -0.974
 101433 101434 SPy1138 SPy1139     TRUE 0.752 53.000 0.189 1.000   -0.578
 101435 101436 SPy1140 SPy1141 tdk2 prfA TRUE 0.692 35.000 0.062 1.000 N NA
 101436 101437 SPy1141 SPy1142 prfA hemK TRUE 0.976 0.000 0.084 1.000 Y NA
 101437 101438 SPy1142 SPy1143 hemK   TRUE 0.978 -16.000 0.029 NA Y 0.292
 101438 101439 SPy1143 SPy1144     TRUE 0.894 18.000 0.012 NA   0.492
 101439 101440 SPy1144 SPy1145   glyA TRUE 0.940 -10.000 0.056 1.000   -0.907
 101440 101441 SPy1145 SPy1146 glyA   TRUE 0.859 7.000 0.000 NA   -0.884
 101441 101442 SPy1146 SPy1147     TRUE 0.900 1.000 0.000 NA   0.619
 101442 101443 SPy1147 SPy1148     TRUE 0.908 10.000 0.035 NA   -0.149
 101443 101444 SPy1148 SPy1149     TRUE 0.999 -3.000 0.895 0.007 Y -0.095
 101444 101445 SPy1149 SPy1150   nox FALSE 0.044 241.000 0.000 1.000   -0.063
 101447 101448 SPy1152 SPy1154 gyrA   TRUE 0.834 20.000 0.013 NA N -0.811
 101448 101449 SPy1154 SPy1155     TRUE 0.357 83.000 0.039 NA N -0.586
 101449 101450 SPy1155 SPy1156     FALSE 0.025 487.000 0.000 NA   NA
 101450 101451 SPy1156 SPy1157     TRUE 0.864 8.000 0.000 NA   NA
 101452 101453 SPy1158 SPy1159   hlyIII TRUE 0.363 117.000 0.135 1.000   0.365
 101453 101454 SPy1159 SPy1160 hlyIII   TRUE 0.961 -3.000 0.146 1.000   -0.802
 101455 101456 SPy1161 SPy1162   rnh TRUE 0.961 -10.000 0.148 1.000   -0.089
 101456 101457 SPy1162 SPy1163 rnh smf TRUE 0.711 65.000 0.037 1.000 Y 0.176
 101457 101458 SPy1163 SPy1164 smf topA TRUE 0.703 107.000 0.238 1.000 Y 0.110
 101459 101460 SPy1169 SPy1170   ddh TRUE 0.948 15.000 0.158 NA   -0.565
 101460 101461 SPy1170 SPy1171 ddh satD TRUE 0.369 105.000 0.056 NA   -0.342
 101461 101462 SPy1171 SPy1172 satD satE TRUE 0.983 -7.000 0.250 NA   0.718
 101462 101463 SPy1172 SPy1173 satE gid FALSE 0.208 151.000 0.008 NA   -0.544
 101463 101464 SPy1173 SPy1174 gid   FALSE 0.099 153.000 0.005 1.000 N 0.193
 101464 101465 SPy1174 SPy1175     TRUE 0.878 43.000 0.250 NA   -0.187
 101465 101466 SPy1175 SPy1176     TRUE 0.990 0.000 0.500 NA   -0.324
 101466 101467 SPy1176 SPy1177     TRUE 0.850 10.000 0.062 1.000 N -0.395
 101468 101469 SPy1178 SPy1179 citG   TRUE 0.992 -7.000 0.700 1.000 N 0.123
 101469 101470 SPy1179 SPy1180     TRUE 0.444 158.000 0.400 1.000 N 0.278
 101471 101472 SPy1181 SPy1183     FALSE 0.182 196.000 0.077 NA   NA
 101472 101473 SPy1183 SPy1184     TRUE 0.660 45.000 0.103 1.000 N NA
 101473 101474 SPy1184 SPy1186   citD FALSE 0.201 188.000 0.000 1.000 Y NA
 101474 101475 SPy1186 SPy1188 citD citE TRUE 0.994 -12.000 0.284 0.002 N 0.120
 101475 101476 SPy1188 SPy1189 citE citF TRUE 0.984 3.000 0.119 0.001 N -0.725
 101476 101477 SPy1189 SPy1190 citF citX TRUE 0.946 -7.000 0.138 1.000 N -0.754
 101477 101478 SPy1190 SPy1191 citX oadA TRUE 0.934 0.000 0.123 1.000 N 0.974
 101479 101480 SPy1192 SPy1193 citC   FALSE 0.201 89.000 0.000 1.000   -0.878
 101480 101481 SPy1193 SPy1196     FALSE 0.014 700.000 0.000 1.000   0.570
 101483 101484 SPy1200 SPy1201 ffh ylxM TRUE 0.933 15.000 0.151 1.000   0.866
 101484 101485 SPy1201 SPy1202 ylxM   TRUE 0.642 89.000 0.032 0.038   0.925
 101485 101486 SPy1202 SPy1203     TRUE 0.655 56.000 0.057 NA   0.427
 101488 101489 SPy1205 SPy1206     FALSE 0.022 365.000 0.000 1.000   0.051
 101489 101490 SPy1206 SPy1208     TRUE 0.344 113.000 0.040 NA   0.111
 101490 101491 SPy1208 SPy1209   pdxK TRUE 0.964 -22.000 0.142 NA   -0.200
 101493 101494 SPy1211 SPy1212     FALSE 0.027 322.000 0.000 1.000   0.488
 101494 101495 SPy1212 SPy1213   fhs.1 FALSE 0.339 85.000 0.094 1.000 N -0.544
 101495 101496 SPy1213 SPy1214 fhs.1 lplA TRUE 0.349 128.000 0.200 1.000 N -0.880
 101496 101497 SPy1214 SPy1215 lplA   TRUE 0.794 47.000 0.250 1.000 N -0.505
 101497 101498 SPy1215 SPy1216     TRUE 0.984 -7.000 0.286 NA   0.490
 101498 101499 SPy1216 SPy1217     TRUE 0.965 -7.000 0.107 NA   -0.545
 101499 101500 SPy1217 SPy1218     TRUE 0.940 42.000 0.571 NA N 0.493
 101500 101501 SPy1218 SPy1219     TRUE 0.985 -3.000 0.100 NA Y 0.550
 101501 101502 SPy1219 SPy1220     TRUE 0.906 -3.000 0.019 1.000 N 0.487
 101503 101504 SPy1221 SPy1222 dpfB dfp TRUE 0.914 -7.000 0.002 1.000   -0.221
 101504 101505 SPy1222 SPy1223 dfp   TRUE 0.603 58.000 0.019 NA   -0.502
 101505 101506 SPy1223 SPy1224   pgmA FALSE 0.239 176.000 0.098 NA   0.190
 101507 101508 SPy1225 SPy1226     TRUE 0.997 2.000 0.720 0.034   -0.620
 101508 101509 SPy1226 SPy1227     TRUE 0.988 -7.000 0.438 1.000   NA
 101509 101510 SPy1227 SPy1228     FALSE 0.222 139.000 0.036 1.000   NA
 101510 101511 SPy1228 SPy1230   cdd TRUE 0.606 94.000 0.300 1.000   -0.921
 101511 101512 SPy1230 SPy1232 cdd   FALSE 0.008 653.000 0.000 1.000 N 0.090
 101513 101514 SPy1233 SPy1234 coaA rpsT FALSE 0.317 69.000 0.014 1.000 N -0.765
 101515 101516 SPy1236 SPy1237     TRUE 0.996 -7.000 0.606 1.000 Y -0.262
 101516 101517 SPy1237 SPy1239   pepN FALSE 0.035 346.000 0.061 1.000 N -0.652
 101517 101518 SPy1239 SPy1240 pepN phoU FALSE 0.121 205.000 0.067 NA N -0.425
 101518 101519 SPy1240 SPy1241 phoU pstB TRUE 0.913 68.000 0.413 NA Y -0.424
 101519 101520 SPy1241 SPy1242 pstB pstB2 TRUE 0.998 10.000 0.542 0.001 Y -0.212
 101520 101521 SPy1242 SPy1243 pstB2 pstC TRUE 0.997 16.000 0.490 0.002 Y 0.123
 101521 101522 SPy1243 SPy1244 pstC pstC2 TRUE 0.999 -10.000 0.907 0.002 Y NA
 101522 101523 SPy1244 SPy1245 pstC2 pstS TRUE 0.975 11.000 0.206 1.000 Y NA
 101523 101524 SPy1245 SPy1246 pstS   TRUE 0.486 139.000 0.303 NA N 0.916
 101524 101525 SPy1246 SPy1247     TRUE 0.961 3.000 0.229 NA N -0.087
 101525 101526 SPy1247 SPy1248     TRUE 0.987 -10.000 0.337 NA   -0.234
 101526 101527 SPy1248 SPy1249     TRUE 0.964 2.000 0.169 NA   0.104
 101527 101528 SPy1249 SPy1250   mreA TRUE 0.549 43.000 0.017 1.000 N -0.076
 101528 101529 SPy1250 SPy1251 mreA truB TRUE 0.915 29.000 0.308 1.000 N -0.137
 101529 101530 SPy1251 SPy1252 truB   FALSE 0.312 116.000 0.014 NA   0.545
 101530 101531 SPy1252 SPy1253     TRUE 0.373 97.000 0.045 NA   -0.470
 101531 101532 SPy1253 SPy1254     TRUE 0.911 11.000 0.045 NA   0.388
 101532 101533 SPy1254 SPy1255     TRUE 0.407 92.000 0.121 1.000   -0.647
 101533 101534 SPy1255 SPy1257     TRUE 0.988 15.000 0.438 1.000 Y 0.166
 101536 101537 SPy1259 SPy1260     TRUE 0.407 163.000 0.238 NA   -0.532
 101537 101538 SPy1260 SPy1261     TRUE 0.988 8.000 0.600 NA   0.925
 101538 101539 SPy1261 SPy1262     TRUE 0.955 41.000 0.600 NA   -0.704
 101539 101540 SPy1262 SPy1263     TRUE 0.920 13.000 0.060 NA   0.066
 101540 101541 SPy1263 SPy1264     TRUE 0.939 11.000 0.143 NA   0.235
 101541 101542 SPy1264 SPy1265     TRUE 0.929 37.000 0.357 NA   0.749
 101542 101543 SPy1265 SPy1267   pcrA FALSE 0.022 364.000 0.000 1.000   -0.494
 101544 101545 SPy1270 SPy1272     TRUE 0.477 120.000 0.060 0.071 N -0.053
 101546 101547 SPy1273 SPy1274 cfa   FALSE 0.031 370.000 0.000 NA   -0.718
 101547 101548 SPy1274 SPy1275     TRUE 0.969 16.000 0.154 1.000 Y 0.504
 101548 101549 SPy1275 SPy1276     TRUE 0.964 10.000 0.130 1.000 Y 0.927
 101549 101550 SPy1276 SPy1277     FALSE 0.203 106.000 0.018 1.000 N 0.923
 101550 101551 SPy1277 SPy1280   glmS FALSE 0.066 196.000 0.008 1.000 N 0.978
 101551 101552 SPy1280 SPy1281 glmS sipC FALSE 0.087 176.000 0.011 1.000 N -0.170
 101552 101553 SPy1281 SPy1282 sipC pyk FALSE 0.081 218.000 0.072 1.000 N -0.248
 101553 101554 SPy1282 SPy1283 pyk pfk TRUE 0.961 63.000 0.261 0.006 Y 0.731
 101554 101555 SPy1283 SPy1284 pfk dnaE TRUE 0.376 80.000 0.098 1.000 N -0.088
 101556 101557 SPy1285 SPy1286     TRUE 0.980 0.000 0.412 1.000 N 0.319
 101557 101558 SPy1286 SPy1287     TRUE 0.981 10.000 0.471 NA   -0.486
 101559 101560 SPy1288 SPy1289     TRUE 0.904 -28.000 0.000 NA   -0.105
 2137402 101561 SPy_s01 SPy1290     FALSE 0.043 305.000 0.000 NA   NA
 101562 101563 SPy1291 SPy1292 glgP malM TRUE 0.984 35.000 0.289 0.022 Y 0.268
 101563 101564 SPy1292 SPy1293 malM malR TRUE 0.671 115.000 0.538 1.000 N -0.085
 101565 101566 SPy1294 SPy1295   malF TRUE 0.782 274.000 0.690 0.034 Y 0.072
 101566 101567 SPy1295 SPy1296 malF malG TRUE 0.999 0.000 0.793 0.034 Y -0.350
 101567 101568 SPy1296 SPy1297 malG   TRUE 0.473 155.000 0.069 0.038   0.319
 101569 101570 SPy1298 SPy1299 malA malD TRUE 0.941 22.000 0.200 NA   -0.432
 101570 101571 SPy1299 SPy1301 malD malC TRUE 0.999 -3.000 0.714 0.034 Y 0.359
 101571 101572 SPy1301 SPy1302 malC amyA TRUE 0.672 75.000 0.067 1.000 Y -0.324
 101572 101573 SPy1302 SPy1304 amyA amyB TRUE 0.978 26.000 0.024 0.009 Y 0.365
 101573 101574 SPy1304 SPy1306 amyB malX TRUE 0.368 166.000 0.065 1.000 Y 0.306
 101574 101575 SPy1306 SPy1308 malX   FALSE 0.008 615.000 0.000 1.000 N -0.759
 101575 101576 SPy1308 SPy1309   dltD TRUE 0.777 31.000 0.042 NA N 0.069
 101576 101577 SPy1309 SPy1310 dltD dltC TRUE 0.989 -7.000 0.409 NA   -0.455
 101577 101578 SPy1310 SPy1311 dltC dltB TRUE 0.976 18.000 0.387 NA   0.777
 101578 101579 SPy1311 SPy1312 dltB dltA TRUE 0.987 -3.000 0.435 NA N -0.285
 101579 101580 SPy1312 SPy1314 dltA uvrB FALSE 0.010 419.000 0.000 1.000 N -0.327
 101581 101582 SPy1315 SPy1316     TRUE 0.990 0.000 0.326 1.000 Y NA
 2137403 101583 SPy_1319 SPy1322     FALSE 0.118 178.000 0.000 NA   NA
 101583 101584 SPy1322 SPy1323     TRUE 0.992 -3.000 0.500 NA   0.142
 101584 101585 SPy1323 SPy1324     TRUE 0.997 3.000 0.500 0.014 Y -0.234
 101585 101586 SPy1324 SPy1325     TRUE 0.953 23.000 0.064 0.014 N 0.108
 101586 101587 SPy1325 SPy1326     FALSE 0.313 106.000 0.064 1.000   -0.160
 101587 101588 SPy1326 SPy1328   bglA.2 TRUE 0.980 9.000 0.500 1.000   0.897
 101590 101591 SPy1332 SPy_1333   obgE TRUE 0.486 69.000 0.009 NA   NA
 101592 101593 SPy1335 SPy1336     TRUE 0.965 21.000 0.000 0.054 Y NA
 101598 101599 SPy1344 SPy1345     FALSE 0.300 85.000 0.000 NA   0.026
 101599 101600 SPy1345 SPy1346     FALSE 0.028 305.000 0.000 1.000   -0.020
 101600 101601 SPy1346 SPy1350   psr TRUE 0.603 49.000 0.093 1.000 N -0.826
 101601 101602 SPy1350 SPy1351 psr aroK FALSE 0.105 208.000 0.111 1.000 N -0.802
 101602 101603 SPy1351 SPy1352 aroK aroA TRUE 0.974 -7.000 0.012 1.000 Y 0.799
 101603 101604 SPy1352 SPy1353 aroA   FALSE 0.228 102.000 0.003 1.000   0.038
 101604 101605 SPy1353 SPy1354   map TRUE 0.978 2.000 0.373 1.000   -0.394
 101605 101606 SPy1354 SPy1355 map   TRUE 0.939 16.000 0.235 1.000 N -0.826
 101606 101607 SPy1355 SPy1356     TRUE 0.961 9.000 0.342 1.000 N -0.469
 101607 101608 SPy1356 SPy1357   grab FALSE 0.046 238.000 0.000 1.000   0.856
 101608 101609 SPy1357 SPy1358 grab murZ FALSE 0.022 358.000 0.000 1.000   -0.453
 101609 101610 SPy1358 SPy1359 murZ metK FALSE 0.104 174.000 0.026 1.000 N -0.726
 101610 101611 SPy1359 SPy1361 metK inlA FALSE 0.015 537.000 0.000 1.000   -0.648
 101613 101614 SPy1363 SPy1364   dnaX TRUE 0.879 26.000 0.067 NA   NA
 101614 101615 SPy1364 SPy1365 dnaX   TRUE 0.926 0.000 0.030 NA N 0.436
 101617 101618 SPy1367 SPy1368   udk TRUE 0.424 80.000 0.010 NA   NA
 101620 101621 SPy1370 SPy1371   gapN FALSE 0.222 95.000 0.028 1.000 N -0.704
 101621 101622 SPy1371 SPy1372 gapN pstI FALSE 0.097 185.000 0.035 1.000 N 0.449
 101622 101623 SPy1372 SPy1373 pstI ptsH TRUE 0.994 5.000 0.240 0.013 Y 0.273
 101624 101625 SPy1374 SPy1375 nrdH nrdE.2 TRUE 0.802 20.000 0.026 1.000 N 0.383
 101625 101626 SPy1375 SPy1378 nrdE.2 nrdF.2 TRUE 0.720 333.000 0.500 0.002 Y -0.271
 101626 101627 SPy1378 SPy1379 nrdF.2   TRUE 0.920 -25.000 0.083 1.000 N 0.850
 101627 2137404 SPy1379 SPy_1380     FALSE 0.183 138.000 0.000 NA   NA
 101628 101629 SPy1384 SPy1385     TRUE 0.916 19.000 0.077 NA   0.815
 101629 101630 SPy1385 SPy1386     TRUE 0.988 -3.000 0.362 NA   NA
 101630 101631 SPy1386 SPy1389   alaS FALSE 0.013 361.000 0.000 1.000 N NA
 101631 101632 SPy1389 SPy1390 alaS   FALSE 0.011 387.000 0.000 1.000 N -0.028
 101632 101633 SPy1390 SPy1391     TRUE 0.464 63.000 0.012 1.000   0.010
 101633 101634 SPy1391 SPy1392     TRUE 0.438 66.000 0.012 1.000   NA
 101634 101635 SPy1392 SPy1393   pepB FALSE 0.012 376.000 0.000 1.000 N NA
 101635 101636 SPy1393 SPy1395 pepB   TRUE 0.958 13.000 0.204 NA   -0.647
 101636 101637 SPy1395 SPy1398     FALSE 0.043 426.000 0.020 NA   -0.334
 101637 101638 SPy1398 SPy1399   nagB FALSE 0.203 119.000 0.051 1.000 N -0.451
 101639 101640 SPy1400 SPy1401 queA   TRUE 0.891 7.000 0.004 NA   -0.362
 101641 101642 SPy1402 SPy1404     TRUE 0.920 -3.000 0.000 NA   -0.432
 101642 101643 SPy1404 SPy1405     TRUE 0.917 -15.000 0.000 NA   NA
 101643 101644 SPy1405 SPy1406   sodA FALSE 0.135 167.000 0.000 NA   NA
 101644 101645 SPy1406 SPy1407 sodA holA FALSE 0.190 97.000 0.012 1.000 N -0.691
 101645 101646 SPy1407 SPy1408 holA comEC TRUE 0.596 71.000 0.163 1.000   0.845
 101646 101647 SPy1408 SPy1409 comEC comEA TRUE 0.952 -19.000 0.130 1.000   -0.141
 101647 101648 SPy1409 SPy1410 comEA   FALSE 0.066 200.000 0.014 1.000 N -0.921
 101649 101650 SPy1411 SPy1412     TRUE 0.973 -10.000 0.209 1.000   -0.180
 101651 101652 SPy1414 SPy1415   deaD FALSE 0.142 128.000 0.007 1.000 N 0.901
 101652 101653 SPy1415 SPy1416 deaD prfC FALSE 0.083 307.000 0.000 1.000 Y -0.824
 101653 101654 SPy1416 SPy1419 prfC   FALSE 0.078 248.000 0.003 NA   -0.683
 101654 101655 SPy1419 SPy1420   murF TRUE 0.502 80.000 0.078 NA   -0.982
 101655 101656 SPy1420 SPy1421 murF ddlA TRUE 0.588 191.000 0.046 0.010 Y -0.339
 101656 101657 SPy1421 SPy1422 ddlA recR FALSE 0.183 101.000 0.010 1.000 N -0.222
 101657 2137405 SPy1422 SPy_1423 recR   TRUE 0.586 47.000 0.000 NA   NA
 2137405 101658 SPy_1423 SPy1424     FALSE 0.023 561.000 0.000 NA   NA
 101658 101659 SPy1424 SPy1425     TRUE 0.377 124.000 0.105 NA   0.482
 101659 101660 SPy1425 SPy1427     FALSE 0.278 161.000 0.107 NA   0.706
 101660 101661 SPy1427 SPy1429   gpmA FALSE 0.247 107.000 0.012 1.000   -0.793
 101664 101665 SPy1436 SPy1437 mf3   FALSE 0.075 220.000 0.000 NA   NA
 101666 101667 SPy1438 SPy1440     FALSE 0.226 116.000 0.000 NA   NA
 101667 101668 SPy1440 SPy1441     TRUE 0.923 -3.000 0.000 NA   NA
 101668 101669 SPy1441 SPy1442     TRUE 0.853 10.000 0.000 NA   NA
 101669 101670 SPy1442 SPy1443     TRUE 0.885 3.000 0.000 NA   NA
 101670 101671 SPy1443 SPy1444     TRUE 0.855 12.000 0.000 NA   NA
 101671 101672 SPy1444 SPy1445   hylP3 TRUE 0.857 15.000 0.000 NA   -0.522
 101672 101673 SPy1445 SPy1446 hylP3   TRUE 0.907 0.000 0.000 NA   -0.688
 101673 101674 SPy1446 SPy1447     TRUE 0.994 -3.000 0.667 NA   0.643
 101674 101675 SPy1447 SPy1448     TRUE 0.976 -3.000 0.188 NA   -0.891
 101675 101676 SPy1448 SPy1449     TRUE 0.979 0.000 0.250 NA   0.232
 101676 101677 SPy1449 SPy1450     TRUE 0.993 15.000 0.833 NA   -0.298
 101677 101678 SPy1450 SPy1451     TRUE 0.959 11.000 0.222 NA   -0.512
 101678 101679 SPy1451 SPy1452     TRUE 0.980 12.000 0.444 NA   0.468
 101679 101680 SPy1452 SPy1453     TRUE 0.994 1.000 0.750 NA   -0.911
 101680 101681 SPy1453 SPy1454     TRUE 0.991 -7.000 0.467 NA   -0.261
 101681 101682 SPy1454 SPy1455     TRUE 0.993 -31.000 0.667 NA   -0.798
 101682 101683 SPy1455 SPy1456     TRUE 0.846 10.000 0.000 NA   -0.930
 101683 101684 SPy1456 SPy1457     TRUE 0.907 0.000 0.000 NA   -0.776
 101684 101685 SPy1457 SPy1459     TRUE 0.967 25.000 0.417 NA   -0.401
 101685 101686 SPy1459 SPy1460     TRUE 0.693 81.000 0.263 NA   -0.048
 101686 101687 SPy1460 SPy1461     FALSE 0.237 110.000 0.000 NA   NA
 101687 101688 SPy1461 SPy1462     TRUE 0.925 -7.000 0.000 NA   NA
 101688 101689 SPy1462 SPy1463     TRUE 0.906 -31.000 0.000 NA   NA
 101689 101690 SPy1463 SPy1464     TRUE 0.868 6.000 0.000 NA   NA
 101690 101691 SPy1464 SPy1465     TRUE 0.987 -7.000 0.353 NA   -0.854
 101691 101692 SPy1465 SPy1466     TRUE 0.923 -3.000 0.000 NA   0.733
 101692 101693 SPy1466 SPy1468     FALSE 0.160 149.000 0.000 NA   -0.146
 101693 101694 SPy1468 SPy1469     FALSE 0.233 109.000 0.000 NA   -0.077
 101694 101695 SPy1469 SPy1470     FALSE 0.054 268.000 0.000 NA   NA
 101695 101696 SPy1470 SPy1471     TRUE 0.893 2.000 0.000 NA   NA
 101696 101697 SPy1471 SPy1473     FALSE 0.310 84.000 0.000 NA   NA
 101697 101698 SPy1473 SPy1474     TRUE 0.923 -3.000 0.000 NA   NA
 101698 101699 SPy1474 SPy1475     FALSE 0.244 105.000 0.000 NA   NA
 101699 101700 SPy1475 SPy1476     TRUE 0.923 -7.000 0.000 NA   0.096
 101700 101701 SPy1476 SPy1477     TRUE 0.922 -3.000 0.000 NA   0.339
 101701 101702 SPy1477 SPy1478     TRUE 0.911 0.000 0.000 NA   NA
 101702 101703 SPy1478 SPy1479     TRUE 0.504 56.000 0.000 NA   NA
 101703 101704 SPy1479 SPy1481     FALSE 0.170 146.000 0.000 NA   NA
 101704 101705 SPy1481 SPy1482     TRUE 0.913 -19.000 0.000 NA   NA
 101705 2137406 SPy1482 SPy_1482a     FALSE 0.204 126.000 0.000 NA   NA
 2137406 101706 SPy_1482a SPy1483     TRUE 0.911 0.000 0.000 NA   NA
 101706 101707 SPy1483 SPy1484   xis TRUE 0.893 2.000 0.000 NA   NA
 101707 101708 SPy1484 SPy1485 xis   FALSE 0.053 270.000 0.000 NA   0.695
 101709 101710 SPy1486 SPy1487     TRUE 0.848 12.000 0.000 NA   -0.871
 101710 101711 SPy1487 SPy1488   int2 FALSE 0.200 124.000 0.000 NA   -0.721
 101712 101713 SPy1489 SPy1491 hlpA   TRUE 0.495 99.000 0.156 NA   -0.479
 101713 101714 SPy1491 SPy1492     TRUE 0.995 -22.000 0.828 NA   -0.938
 101714 101715 SPy1492 SPy1493     TRUE 0.974 -25.000 0.203 NA   0.031
 101715 101716 SPy1493 SPy1494     FALSE 0.070 228.000 0.000 NA   -0.199
 101716 101717 SPy1494 SPy1495   recN FALSE 0.090 172.000 0.000 1.000   0.339
 101717 101718 SPy1495 SPy1496 recN   TRUE 0.796 22.000 0.037 1.000 N NA
 101718 101719 SPy1496 SPy1497   hlyA1 TRUE 0.913 -13.000 0.048 1.000 N NA
 101719 101720 SPy1497 SPy1498 hlyA1 fps TRUE 0.920 -7.000 0.058 1.000 N -0.874
 101720 101721 SPy1498 SPy1499 fps xseB TRUE 0.927 0.000 0.100 1.000 N 0.442
 101721 101722 SPy1499 SPy1500 xseB xseA TRUE 0.998 -22.000 0.412 0.001 Y -0.952
 101722 101723 SPy1500 SPy1502 xseA folD FALSE 0.139 153.000 0.045 1.000 N -0.181
 101723 101724 SPy1502 SPy1503 folD   FALSE 0.061 208.000 0.013 1.000 N -0.651
 101724 101725 SPy1503 SPy1505   phr FALSE 0.073 178.000 0.004 1.000 N 0.522
 101725 101726 SPy1505 SPy1506 phr   FALSE 0.068 149.000 0.000 1.000 N 0.502
 101726 101727 SPy1506 SPy1507     TRUE 0.996 0.000 0.640 1.000 Y -0.141
 101727 101728 SPy1507 SPy1508     FALSE 0.305 127.000 0.044 NA   -0.328
 101729 101730 SPy1509 SPy1510 clpE mutT FALSE 0.217 128.000 0.079 1.000 N 0.387
 101730 101731 SPy1510 SPy1511 mutT   TRUE 0.740 51.000 0.114 NA   0.773
 101732 101733 SPy1513 SPy1514 ileS divIVAS FALSE 0.055 273.000 0.012 NA N 0.085
 101733 101734 SPy1514 SPy1515 divIVAS   TRUE 0.986 10.000 0.579 NA   0.917
 101734 101735 SPy1515 SPy1516     TRUE 0.977 0.000 0.287 1.000   0.139
 101735 101736 SPy1516 SPy1518     TRUE 0.979 5.000 0.370 NA   -0.214
 101736 101737 SPy1518 SPy1519     TRUE 0.954 12.000 0.194 NA   -0.825
 101737 101738 SPy1519 SPy1520   ftsZ TRUE 0.927 3.000 0.030 NA   -0.397
 101738 101739 SPy1520 SPy1521 ftsZ ftsA TRUE 0.983 24.000 0.460 1.000 Y 0.099
 101739 101740 SPy1521 SPy1523 ftsA divIB FALSE 0.334 212.000 0.389 NA N -0.148
 101740 101741 SPy1523 SPy_1524 divIB murG TRUE 0.978 1.000 0.072 NA Y NA
 101741 101742 SPy_1524 SPy1525 murG murD TRUE 0.974 -21.000 0.060 1.000 Y NA
 101742 101743 SPy1525 SPy1526 murD   FALSE 0.041 384.000 0.006 NA   -0.407
 101743 101744 SPy1526 SPy1527     FALSE 0.302 122.000 0.015 NA   0.991
 101744 101745 SPy1527 SPy1528     FALSE 0.098 183.000 0.003 NA N -0.669
 101745 101746 SPy1528 SPy1529   glcK TRUE 0.891 10.000 0.064 NA N 0.121
 101746 101747 SPy1529 SPy1530 glcK   TRUE 0.984 5.000 0.496 NA   -0.532
 101747 101748 SPy1530 SPy1531   dpr FALSE 0.281 142.000 0.058 NA   0.036
 101750 101751 SPy1533 SPy1534     TRUE 0.917 4.000 0.016 NA   -0.731
 101751 101752 SPy1534 SPy1535     FALSE 0.027 424.000 0.000 NA   0.012
 101752 101753 SPy1535 SPy1536     FALSE 0.011 414.000 0.000 1.000 N 0.665
 101753 101754 SPy1536 SPy1537   kdtB TRUE 0.912 -13.000 0.052 1.000 N -0.223
 101754 101755 SPy1537 SPy1538 kdtB   TRUE 0.980 -10.000 0.367 1.000 N -0.777
 101755 101756 SPy1538 SPy1539   asnA FALSE 0.142 123.000 0.006 1.000 N -0.265
 101756 101757 SPy1539 SPy1541 asnA arcC FALSE 0.083 313.000 0.000 1.000 Y 0.780
 101757 101758 SPy1541 SPy1542 arcC   TRUE 0.940 20.000 0.035 1.000 Y -0.983
 101758 101759 SPy1542 SPy1543     TRUE 0.921 17.000 0.140 1.000   -0.048
 101759 101760 SPy1543 SPy1544   arcB FALSE 0.205 170.000 0.104 1.000   -0.733
 101760 101761 SPy1544 SPy1546 arcB   TRUE 0.756 40.000 0.104 1.000   0.241
 101761 101762 SPy1546 SPy1547   sagP (arcA) FALSE 0.311 100.000 0.056 1.000   -0.556
 101762 101763 SPy1547 SPy1548 sagP (arcA)   FALSE 0.019 274.000 0.000 1.000 N -0.760
 101765 101766 SPy1551 SPy1552     TRUE 0.899 14.000 0.009 NA   0.096
 101766 2137407 SPy1552 SPy_1553     TRUE 0.367 73.000 0.000 NA   NA
 2137407 101767 SPy_1553 SPy1556     TRUE 0.923 -3.000 0.000 NA   NA
 101767 101768 SPy1556 SPy1557   msrA TRUE 0.590 88.000 0.240 1.000   0.533
 101768 101769 SPy1557 SPy1558 msrA   TRUE 0.984 43.000 0.875 1.000 Y 0.086
 101769 101770 SPy1558 SPy1559   ccdA TRUE 0.990 13.000 0.500 1.000 Y -0.966
 101770 101771 SPy1559 SPy1561 ccdA   FALSE 0.008 538.000 0.000 1.000 N -0.984
 11497913 101767   SPy1556     FALSE NA 2742.000 0.000 NA   NA
 11640276 101767   SPy1556     FALSE NA 2742.000 0.000 NA   NA
 11782668 101767   SPy1556     FALSE NA 2742.000 0.000 NA   NA
 11497914 101767   SPy1556     FALSE NA 2775.000 0.000 NA   NA
 11640277 101767   SPy1556     FALSE NA 2775.000 0.000 NA   NA
 11782669 101767   SPy1556     FALSE NA 2775.000 0.000 NA   NA
 11497915 101767   SPy1556     FALSE NA 2808.000 0.000 NA   NA
 11640278 101767   SPy1556     FALSE NA 2808.000 0.000 NA   NA
 11782670 101767   SPy1556     FALSE NA 2808.000 0.000 NA   NA
 11497916 101767   SPy1556     FALSE NA 2841.000 0.000 NA   NA
 11640279 101767   SPy1556     FALSE NA 2841.000 0.000 NA   NA
 11782671 101767   SPy1556     FALSE NA 2841.000 0.000 NA   NA
 11497917 101767   SPy1556     FALSE NA 2873.000 0.000 NA   NA
 11640280 101767   SPy1556     FALSE NA 2873.000 0.000 NA   NA
 11782672 101767   SPy1556     FALSE NA 2873.000 0.000 NA   NA
 11497918 101767   SPy1556     FALSE NA 2906.000 0.000 NA   NA
 11640281 101767   SPy1556     FALSE NA 2906.000 0.000 NA   NA
 11782673 101767   SPy1556     FALSE NA 2906.000 0.000 NA   NA
 11497919 101767   SPy1556     FALSE NA 2940.000 0.000 NA   NA
 11640282 101767   SPy1556     FALSE NA 2940.000 0.000 NA   NA
 11782674 101767   SPy1556     FALSE NA 2940.000 0.000 NA   NA
 101771 101772 SPy1561 SPy1562     TRUE 0.996 11.000 0.882 1.000 Y 0.469
 101772 101773 SPy1562 SPy1563     TRUE 0.998 -3.000 0.773 NA Y -0.433
 101773 101774 SPy1563 SPy1564     TRUE 0.996 2.000 0.711 NA Y -0.224
 101774 101775 SPy1564 SPy1565     TRUE 0.995 5.000 0.948 NA   -0.484
 101775 101776 SPy1565 SPy1566     TRUE 0.996 0.000 0.891 NA   0.183
 101776 101777 SPy1566 SPy1567     TRUE 0.769 133.000 0.664 NA   0.529
 101777 101778 SPy1567 SPy1568   valS FALSE 0.103 154.000 0.000 1.000   -0.283
 101778 101779 SPy1568 SPy1569 valS   TRUE 0.921 2.000 0.008 NA   -0.309
 101779 101780 SPy1569 SPy1570     TRUE 0.954 -3.000 0.033 NA   0.532
 101780 101781 SPy1570 SPy1571     FALSE 0.027 425.000 0.000 NA   0.887
 101781 101782 SPy1571 SPy1572     TRUE 0.846 18.000 0.000 NA   0.444
 398238 101783 SPy_t42 SPy1574 tRNA-Thr   FALSE 0.100 193.000 0.000 NA   NA
 101783 101784 SPy1574 SPy1575     TRUE 0.873 5.000 0.000 NA   NA
 101784 101785 SPy1575 SPy1576     TRUE 0.533 52.000 0.000 NA   0.927
 101785 101786 SPy1576 SPy1577   aroB TRUE 0.924 56.000 0.003 0.003 Y 0.871
 101787 101788 SPy1580 SPy1581     TRUE 0.890 2.000 0.000 NA   -0.191
 101788 101789 SPy1581 SPy1582     TRUE 0.647 53.000 0.026 NA   0.051
 101789 101790 SPy1582 SPy1584   aroE FALSE 0.025 235.000 0.000 1.000 N -0.565
 101790 101791 SPy1584 SPy1586 aroE   FALSE 0.178 138.000 0.061 1.000 N -0.360
 101791 101792 SPy1586 SPy1587     TRUE 0.945 -70.000 0.167 1.000 N 0.868
 101792 101793 SPy1587 SPy1588     TRUE 0.995 0.000 0.167 0.010 Y 0.236
 101793 101794 SPy1588 SPy1589     TRUE 0.994 -10.000 0.667 NA   0.610
 101794 101795 SPy1589 SPy1591     FALSE 0.042 306.000 0.000 NA   NA
 101795 101796 SPy1591 SPy1592     TRUE 0.907 -28.000 0.000 NA   NA
 101796 101797 SPy1592 SPy1593     TRUE 0.933 81.000 0.333 0.032 Y -0.549
 101797 101798 SPy1593 SPy1595     TRUE 0.998 10.000 0.917 0.032 Y -0.454
 101800 101801 SPy1599 SPy1600     TRUE 0.912 24.000 0.182 1.000   -0.678
 101801 101802 SPy1600 SPy1602     TRUE 0.827 51.000 0.286 1.000   -0.620
 101803 101804 SPy1603 SPy1604     TRUE 0.945 15.000 0.194 1.000   -0.730
 101805 101806 SPy1605 SPy1606     FALSE 0.013 665.000 0.000 NA N -0.293
 101807 101808 SPy1607 SPy1608     TRUE 0.447 80.000 0.025 NA   -0.644
 101808 101809 SPy1608 SPy1610     FALSE 0.033 370.000 0.000 NA   NA
 398256 398255 SPy_t43 SPy_t44 tRNA-Glu tRNA-Ile TRUE 0.808 23.000 0.000 NA   NA
 398255 398254 SPy_t44 SPy_t45 tRNA-Ile tRNA-Thr TRUE 0.674 36.000 0.000 NA   NA
 398254 398253 SPy_t45 SPy_t46 tRNA-Thr tRNA-Leu TRUE 0.851 11.000 0.000 NA   NA
 398253 398252 SPy_t46 SPy_t47 tRNA-Leu tRNA-Lys TRUE 0.868 6.000 0.000 NA   NA
 398252 398251 SPy_t47 SPy_t48 tRNA-Lys tRNA-Asp TRUE 0.727 32.000 0.000 NA   NA
 398251 398250 SPy_t48 SPy_t49 tRNA-Asp tRNA-Val TRUE 0.847 18.000 0.000 NA   NA
 398250 3811779 SPy_t49 SPy_r17 tRNA-Val   TRUE 0.847 18.000 0.000 NA   NA
 3811779 407268 SPy_r17 SPy_r09   rrl FALSE 0.296 87.000 0.000 NA   NA
 407268 398249 SPy_r09 SPy_t50 rrl tRNA-Ala FALSE 0.045 296.000 0.000 NA   NA
 398249 3811780 SPy_t50 SPy_r10 tRNA-Ala   TRUE 0.555 50.000 0.000 NA   NA
 3811780 101810 SPy_r10 SPy1613     FALSE 0.019 881.000 0.000 NA   NA
 101810 101811 SPy1613 SPy1615   comFC TRUE 0.513 80.000 0.080 NA   0.828
 101811 101812 SPy1615 SPy1616 comFC comFA TRUE 0.960 -28.000 0.130 NA   0.020
 101813 101814 SPy1617 SPy1618   cysM FALSE 0.234 128.000 0.033 1.000   -0.640
 101815 2137409 SPy1619 SPy_1620     TRUE 0.911 0.000 0.000 NA   NA
 2137409 101816 SPy_1620 SPy1621     TRUE 0.666 37.000 0.000 NA   NA
 101816 101817 SPy1621 SPy1622     TRUE 0.999 -7.000 0.853 0.010 Y -0.548
 101817 101818 SPy1622 SPy1623     TRUE 0.942 54.000 0.679 NA   0.119
 101818 101819 SPy1623 SPy1625     TRUE 0.510 72.000 0.039 NA   0.279
 101819 101820 SPy1625 SPy1626   pppL TRUE 0.997 -3.000 0.704 1.000 Y -0.397
 101820 101821 SPy1626 SPy1627 pppL sunL TRUE 0.670 38.000 0.074 1.000 N -0.655
 101821 101822 SPy1627 SPy1628 sunL fmt TRUE 0.991 -10.000 0.305 1.000 Y -0.218
 101822 101823 SPy1628 SPy1629 fmt priA TRUE 0.432 62.000 0.052 1.000 N -0.199
 101823 101824 SPy1629 SPy1630 priA   TRUE 0.697 65.000 0.032 0.050 N 0.031
 101824 101825 SPy1630 SPy1632   gmk TRUE 0.967 19.000 0.471 1.000 N -0.266
 101825 101826 SPy1632 SPy1633 gmk   FALSE 0.244 110.000 0.010 1.000   0.199
 101826 101827 SPy1633 SPy1634     FALSE 0.192 130.000 0.006 1.000   0.556
 101828 101829 SPy1637 SPy1638 atoB atoD.1 TRUE 0.952 24.000 0.150 1.000 Y -0.957
 101829 101830 SPy1638 SPy1639 atoD.1 atoA TRUE 0.996 2.000 0.200 0.002 Y -0.780
 101830 101831 SPy1639 SPy1640 atoA   TRUE 0.967 33.000 0.111 0.039 Y -0.853
 101831 101832 SPy1640 SPy1641     TRUE 0.697 71.000 0.333 1.000 N -0.990
 101832 101833 SPy1641 SPy_1642   luxS TRUE 0.875 -16.000 0.006 1.000 N NA
 101834 101835 SPy1643 SPy1644     TRUE 0.913 14.000 0.029 NA   0.125
 101835 101836 SPy1644 SPy1646     FALSE 0.025 445.000 0.000 NA   -0.570
 101836 101837 SPy1646 SPy1647     TRUE 0.768 122.000 0.579 NA   -0.608
 101838 101839 SPy1648 SPy1649 recU pbp1A TRUE 0.981 -13.000 0.319 1.000   0.160
 101840 101841 SPy1651 SPy1652 pepC nadE FALSE 0.086 185.000 0.017 1.000 N -0.113
 101841 101842 SPy1652 SPy1653 nadE   TRUE 0.996 2.000 0.194 0.002 Y 0.446
 101842 101843 SPy1653 SPy1654   aapA FALSE 0.110 171.000 0.032 1.000 N -0.971
 101843 101844 SPy1654 SPy1656 aapA   FALSE 0.019 1150.000 0.000 NA   NA
 101844 101845 SPy1656 SPy1657     TRUE 0.685 104.000 0.364 NA   NA
 101845 101846 SPy1657 SPy1658     TRUE 0.990 0.000 0.310 1.000 Y NA
 101846 101847 SPy1658 SPy1659     FALSE 0.077 195.000 0.018 1.000 N -0.341
 101847 101848 SPy1659 SPy1662   mraY FALSE 0.100 158.000 0.007 1.000 N 0.248
 101848 101849 SPy1662 SPy1664 mraY pbpX TRUE 0.966 2.000 0.038 1.000 Y 0.609
 101849 101850 SPy1664 SPy1665 pbpX ftsL TRUE 0.975 4.000 0.456 1.000 N 0.267
 101850 101851 SPy1665 SPy1666 ftsL   TRUE 0.882 5.000 0.077 1.000 N 0.116
 101851 101852 SPy1666 SPy1670   proA FALSE 0.015 474.000 0.003 1.000 N -0.213
 101852 101853 SPy1670 SPy1672 proA proB TRUE 0.998 -7.000 0.281 0.002 Y 0.357
 101853 101854 SPy1672 SPy1673 proB   TRUE 0.496 65.000 0.006 NA   -0.630
 101854 101855 SPy1673 SPy1674     TRUE 0.977 5.000 0.341 NA   -0.015
 101855 101856 SPy1674 SPy1675     TRUE 0.861 34.000 0.136 NA   0.460
 101856 101857 SPy1675 SPy_1676   tkt TRUE 0.377 193.000 0.300 NA   NA
 101857 101858 SPy_1676 SPy1678 tkt   FALSE 0.153 218.000 0.000 1.000 Y NA
 101858 101859 SPy1678 SPy1680     FALSE 0.198 126.000 0.000 NA   -0.254
 101859 101860 SPy1680 SPy1681     TRUE 0.990 -10.000 0.462 NA   -0.336
 101860 101861 SPy1681 SPy1682   glpF TRUE 0.624 108.000 0.364 1.000   -0.326
 101861 101862 SPy1682 SPy1683 glpF glpO TRUE 0.981 2.000 0.500 1.000 N -0.923
 101862 101863 SPy1683 SPy1684 glpO glpK TRUE 0.998 16.000 0.500 0.001 Y 0.674
 101863 101864 SPy1684 SPy1686 glpK   FALSE 0.023 360.000 0.000 1.000   0.588
 101864 101865 SPy1686 SPy1687     TRUE 0.532 67.000 0.029 NA   -0.344
 101865 101866 SPy1687 SPy1688   glyS FALSE 0.223 154.000 0.020 NA   -0.591
 101866 101867 SPy1688 SPy1689 glyS glyQ TRUE 0.756 378.000 0.651 0.001 Y 0.178
 101867 101868 SPy1689 SPy1691 glyQ   FALSE 0.021 372.000 0.000 1.000   0.174
 101868 101869 SPy1691 SPy1693     FALSE 0.322 111.000 0.074 1.000   0.292
 101869 101870 SPy1693 SPy1694   nagA FALSE 0.262 122.000 0.045 1.000   -0.016
 101870 101871 SPy1694 SPy1695 nagA   FALSE 0.245 118.000 0.090 1.000 N -0.584
 101875 101876 SPy1700 SPy1701     TRUE 0.938 2.000 0.047 NA   0.805
 101876 101877 SPy1701 SPy1704   lacD.1 FALSE 0.130 209.000 0.019 NA   0.814
 101877 2137410 SPy1704 SPy_1705 lacD.1 lacC.1 TRUE 0.914 -17.000 0.000 NA   NA
 2137410 101878 SPy_1705 SPy1707 lacC.1 lacB.1 TRUE 0.853 10.000 0.000 NA   NA
 101878 101879 SPy1707 SPy1708 lacB.1 lacA.1 TRUE 0.998 15.000 0.500 0.002 Y NA
 101879 101880 SPy1708 SPy1709 lacA.1   FALSE 0.134 240.000 0.000 1.000 Y NA
 101880 101881 SPy1709 SPy1710     TRUE 0.961 29.000 0.000 0.017 Y -0.103
 101881 101882 SPy1710 SPy1711     TRUE 0.998 -7.000 0.429 0.013 Y -0.544
 101884 101885 SPy1714 SPy1715 copZ copA TRUE 0.990 14.000 0.048 0.002 Y -0.207
 101885 101886 SPy1715 SPy1717 copA copY TRUE 0.753 30.000 0.064 1.000 N 0.963
 101888 101889 SPy1719 SPy1721 rbfA infB TRUE 0.640 199.000 0.530 1.000 Y 0.776
 101889 101890 SPy1721 SPy1722 infB   TRUE 0.978 20.000 0.223 NA Y 0.834
 101890 101891 SPy1722 SPy1723     TRUE 0.987 -7.000 0.408 NA N 0.624
 101891 101892 SPy1723 SPy1724   nusA TRUE 0.987 16.000 0.323 NA Y 0.805
 101892 101893 SPy1724 SPy1725 nusA   TRUE 0.720 175.000 0.759 NA   0.074
 101893 398248 SPy1725 SPy_t51   tRNA-Ser FALSE 0.057 261.000 0.000 NA   NA
 398248 101894 SPy_t51 SPy1726 tRNA-Ser   TRUE 0.426 65.000 0.000 NA   NA
 101894 101895 SPy1726 SPy1727     TRUE 0.968 0.000 0.154 NA   0.013
 101895 101896 SPy1727 SPy1728     TRUE 0.574 64.000 0.107 NA N 0.912
 101896 101897 SPy1728 SPy1729     TRUE 0.948 3.000 0.167 NA N 0.599
 101898 101899 SPy1730 SPy1731 hit   TRUE 0.958 -3.000 0.063 NA   -0.191
 101900 101901 SPy1733 SPy1734     TRUE 0.960 9.000 0.283 NA N -0.281
 101901 101902 SPy1734 SPy1735     TRUE 0.943 -25.000 0.033 NA   -0.970
 101902 101903 SPy1735 SPy1736     FALSE 0.202 154.000 0.008 NA   0.291
 101904 101905 SPy1737 SPy1738   manL FALSE 0.023 352.000 0.000 1.000   -0.937
 101905 101906 SPy1738 SPy1739 manL manM TRUE 0.981 89.000 0.943 0.017 Y -0.921
 101906 101907 SPy1739 SPy1740 manM manN TRUE 0.998 17.000 0.812 0.017 Y -0.722
 101907 101908 SPy1740 SPy1741 manN   TRUE 0.788 114.000 0.583 NA   0.065
 101908 101909 SPy1741 SPy1742   serS FALSE 0.038 392.000 0.003 NA   0.195
 101910 101911 SPy1743 SPy1744 accA accD TRUE 0.997 -3.000 0.234 0.002 Y 0.477
 101911 101912 SPy1744 SPy1745 accD accC TRUE 0.991 9.000 0.090 0.002 Y 0.030
 101912 101913 SPy1745 SPy1746 accC fabZ TRUE 0.899 32.000 0.045 1.000 Y -0.703
 101913 101914 SPy1746 SPy1747 fabZ accB TRUE 0.993 0.000 0.047 0.007 Y -0.942
 101914 101915 SPy1747 SPy1748 accB fabF TRUE 0.970 2.000 0.074 1.000 Y 0.907
 101915 101916 SPy1748 SPy1749 fabF fabG TRUE 0.957 15.000 0.056 1.000 Y 0.920
 101916 101917 SPy1749 SPy1750 fabG fabD TRUE 0.998 -10.000 0.432 0.007 Y 0.965
 101917 101918 SPy1750 SPy1751 fabD fabK TRUE 0.869 25.000 0.099 1.000   0.970
 101918 101919 SPy1751 SPy1753 fabK acpP FALSE 0.239 202.000 0.216 1.000   -0.140
 101919 101920 SPy1753 SPy1754 acpP fabH TRUE 0.859 61.000 0.065 0.007   0.009
 101920 101921 SPy1754 SPy1755 fabH   TRUE 0.905 1.000 0.070 1.000 N 0.055
 101921 101922 SPy1755 SPy1758   phaB TRUE 0.388 77.000 0.098 1.000 N -0.746
 101922 101923 SPy1758 SPy1759 phaB dnaJ FALSE 0.028 220.000 0.000 1.000 N -0.099
 101923 101924 SPy1759 SPy1760 dnaJ dnaK TRUE 0.564 281.000 0.196 0.003 Y -0.828
 101924 101925 SPy1760 SPy1761 dnaK grpE TRUE 0.631 181.000 0.026 0.007 Y 0.802
 101925 101926 SPy1761 SPy1763 grpE hrcA TRUE 0.877 3.000 0.051 1.000 N 0.688
 101926 101927 SPy1763 SPy1764 hrcA   FALSE 0.131 135.000 0.009 1.000 N 0.223
 101927 101928 SPy1764 SPy1765     TRUE 0.958 -3.000 0.174 1.000 N NA
 101928 101929 SPy1765 SPy1766     TRUE 0.957 -10.000 0.174 1.000 N NA
 101929 101930 SPy1766 SPy1768     FALSE 0.020 391.000 0.000 1.000   0.069
 101930 101931 SPy1768 SPy1769     FALSE 0.076 219.000 0.000 NA   NA
 101931 101932 SPy1769 SPy1770   gatB TRUE 0.923 -3.000 0.000 NA   NA
 101932 101933 SPy1770 SPy1771 gatB gatA TRUE 0.998 0.000 0.492 0.002 Y 0.404
 101933 101934 SPy1771 SPy1772 gatA gatC TRUE 0.999 0.000 0.643 0.002 Y 0.371
 101934 101935 SPy1772 SPy1776 gatC   FALSE 0.007 995.000 0.000 1.000 N -0.461
 101935 101936 SPy1776 SPy1777   codY FALSE 0.188 147.000 0.083 1.000 N 0.573
 101936 101937 SPy1777 SPy1779 codY   FALSE 0.061 218.000 0.015 1.000 N 0.858
 101941 101942 SPy1783 SPy1784     TRUE 0.858 13.000 0.000 NA   0.337
 101942 101943 SPy1784 SPy1785   recG FALSE 0.017 293.000 0.000 1.000 N 0.218
 101943 101944 SPy1785 SPy1787 recG   FALSE 0.021 375.000 0.000 1.000   -0.375
 101944 101945 SPy1787 SPy1788     TRUE 0.987 -3.000 0.429 1.000   NA
 101945 101946 SPy1788 SPy1789     TRUE 0.993 -3.000 0.562 NA   NA
 101946 101947 SPy1789 SPy1790     TRUE 0.961 -3.000 0.081 NA   -0.683
 101947 101948 SPy1790 SPy1791     TRUE 0.997 -7.000 0.576 0.006 N -0.005
 101948 101949 SPy1791 SPy1793     TRUE 0.918 -3.000 0.047 1.000 N NA
 101949 101950 SPy1793 SPy1794     TRUE 0.996 -3.000 0.657 1.000 Y NA
 101950 101951 SPy1794 SPy1795     TRUE 0.997 2.000 0.877 1.000 Y -0.949
 101951 101952 SPy1795 SPy1796     TRUE 0.973 -16.000 0.182 NA   -0.951
 101952 101953 SPy1796 SPy1798     FALSE 0.332 197.000 0.273 NA   -0.011
 101953 101954 SPy1798 SPy1801   isp2 FALSE 0.024 489.000 0.000 NA   -0.543
 101954 101955 SPy1801 SPy1802 isp2 alr TRUE 0.406 87.000 0.022 NA   -0.041
 101955 101956 SPy1802 SPy1804 alr acpS TRUE 0.934 -3.000 0.093 1.000 N 0.193
 101956 101957 SPy1804 SPy1805 acpS secA FALSE 0.160 116.000 0.008 1.000 N 0.131
 101957 101958 SPy1805 SPy1806 secA   TRUE 0.345 78.000 0.000 NA   NA
 101958 101959 SPy1806 SPy1807     TRUE 0.873 5.000 0.000 NA   NA
 101959 101960 SPy1807 SPy1810   pmi FALSE 0.058 162.000 0.000 1.000 N NA
 101960 101961 SPy1810 SPy1811 pmi scrK TRUE 0.783 95.000 0.333 1.000 Y -0.477
 101961 101962 SPy1811 SPy1813 scrK   FALSE 0.036 264.000 0.000 1.000   -0.478
 101962 101963 SPy1813 SPy1815   scrA FALSE 0.040 253.000 0.000 1.000   -0.197
 101964 101965 SPy1816 SPy1817 scrB scrR TRUE 0.981 5.000 0.571 1.000 N -0.555
 101966 101967 SPy1818 SPy1820 nusB   TRUE 0.983 -7.000 0.265 NA   0.289
 101967 101968 SPy1820 SPy1821   efp TRUE 0.711 46.000 0.031 NA   -0.453
 101968 101969 SPy1821 SPy1823 efp comEB FALSE 0.166 96.000 0.005 1.000 N -0.749
 101969 101970 SPy1823 SPy1824 comEB pepP TRUE 0.633 35.000 0.018 1.000 N 0.060
 101970 101971 SPy1824 SPy1825 pepP uvrA FALSE 0.162 115.000 0.008 1.000 N 0.217
 101972 101973 SPy1827 SPy1828     FALSE 0.320 133.000 0.072 NA   0.093
 101974 101975 SPy1829 SPy1830 rpsR   FALSE 0.099 165.000 0.012 1.000 N -0.347
 101975 101976 SPy1830 SPy1831   rpsF TRUE 0.758 22.000 0.012 1.000 N 0.907
 101976 101977 SPy1831 SPy1832 rpsF   FALSE 0.129 173.000 0.000 NA   NA
 101978 101979 SPy1833 SPy1834 mutY   FALSE 0.225 76.000 0.002 1.000 N -0.815
 101980 101981 SPy1835 SPy1836 trx   TRUE 0.398 81.000 0.053 1.000   NA
 101981 101982 SPy1836 SPy1837   mutS2 TRUE 0.899 1.000 0.005 1.000   NA
 101982 101983 SPy1837 SPy1839 mutS2   FALSE 0.230 149.000 0.070 1.000   0.194
 101983 101984 SPy1839 SPy1840     TRUE 0.926 3.000 0.019 NA   0.371
 101985 101986 SPy1841 SPy1842   spi TRUE 0.866 11.000 0.080 1.000 N 0.587
 101986 101987 SPy1842 SPy1844 spi   TRUE 0.534 58.000 0.099 1.000 N -0.304
 101987 101988 SPy1844 SPy1845     TRUE 0.405 91.000 0.050 NA   -0.133
 101991 101992 SPy1850 SPy1851     TRUE 0.984 -15.000 0.326 NA   -0.617
 101994 101995 SPy1854 SPy1856 glpF.2 norA FALSE 0.179 403.000 0.000 0.031 Y -0.323
 101996 101997 SPy1857 SPy1858   pepXP TRUE 0.874 22.000 0.081 1.000   0.084
 101997 101998 SPy1858 SPy1861 pepXP   FALSE 0.017 472.000 0.000 1.000   -0.476
 101998 101999 SPy1861 SPy1862     FALSE 0.124 193.000 0.002 NA   0.847
 102000 102001 SPy1863 SPy1864   dnaQ FALSE 0.253 149.000 0.156 1.000 N 0.462
 102001 102002 SPy1864 SPy1865 dnaQ   TRUE 0.915 10.000 0.057 NA   -0.014
 102004 102005 SPy1867 SPy1868 deoC nupC TRUE 0.968 30.000 0.333 1.000 Y -0.573
 102005 102006 SPy1868 SPy1869 nupC udp TRUE 0.932 21.000 0.015 1.000 Y -0.564
 102007 102008 SPy1870 SPy1871   rpsN2 FALSE 0.027 236.000 0.000 1.000 N 0.530
 102009 102010 SPy1872 SPy1873     TRUE 0.936 -10.000 0.030 1.000   0.258
 102010 102011 SPy1873 SPy1874     TRUE 0.963 2.000 0.209 1.000   0.493
 102012 102013 SPy1875 SPy1876     TRUE 0.990 2.000 0.576 NA   NA
 102014 102015 SPy1877 SPy1878 glnA   TRUE 0.785 38.000 0.179 1.000 N -0.697
 102015 102016 SPy1878 SPy1879     TRUE 0.666 67.000 0.154 NA   0.101
 102016 102017 SPy1879 SPy1881   pgk FALSE 0.068 263.000 0.002 NA   -0.345
 102017 102018 SPy1881 SPy1882 pgk lppC FALSE 0.089 193.000 0.003 1.000   -0.423
 102018 102019 SPy1882 SPy1884 lppC   FALSE 0.047 230.000 0.000 1.000   -0.618
 102019 102020 SPy1884 SPy1885     FALSE 0.066 237.000 0.006 1.000   -0.265
 102020 102021 SPy1885 SPy1886   asp TRUE 0.992 0.000 0.567 NA   0.089
 102021 102022 SPy1886 SPy1888 asp rpmB FALSE 0.243 152.000 0.044 NA   -0.590
 102022 102023 SPy1888 SPy1889 rpmB fba FALSE 0.011 382.000 0.000 1.000 N 0.069
 102023 398247 SPy1889 SPy_t52 fba tRNA-Leu FALSE 0.087 207.000 0.000 NA   NA
 398247 102024 SPy_t52 SPy1892 tRNA-Leu   TRUE 0.519 54.000 0.000 NA   NA
 102024 102025 SPy1892 SPy1894   pyrG FALSE 0.121 168.000 0.002 1.000   0.786
 102025 102026 SPy1894 SPy1895 pyrG rpoE FALSE 0.049 257.000 0.029 1.000 N 0.063
 102026 102027 SPy1895 SPy1896 rpoE ropA FALSE 0.048 217.000 0.005 1.000 N -0.583
 102029 102030 SPy1898 SPy1899     TRUE 0.941 17.000 0.149 NA   -0.140
 102030 102031 SPy1899 SPy1900   thiD TRUE 0.983 -10.000 0.276 NA   -0.250
 102031 102032 SPy1900 SPy1901 thiD truA TRUE 0.918 -10.000 0.058 1.000 N -0.135
 102032 102033 SPy1901 SPy1902 truA comX1.2 FALSE 0.076 185.000 0.000 1.000   0.498
 102033 398246 SPy1902 SPy_t53 comX1.2 tRNA-Arg TRUE 0.784 26.000 0.000 NA   NA
 398246 398245 SPy_t53 SPy_t54 tRNA-Arg tRNA-Asn FALSE 0.333 80.000 0.000 NA   NA
 398245 3811781 SPy_t54 SPy_r18 tRNA-Asn   TRUE 0.868 6.000 0.000 NA   NA
 3811781 407269 SPy_r18 SPy_r11   rrl FALSE 0.296 87.000 0.000 NA   NA
 407269 398244 SPy_r11 SPy_t55 rrl tRNA-Ala FALSE 0.045 296.000 0.000 NA   NA
 398244 3811782 SPy_t55 SPy_r12 tRNA-Ala   TRUE 0.555 50.000 0.000 NA   NA
 3811782 102034 SPy_r12 SPy1903     FALSE 0.031 387.000 0.000 NA   NA
 102035 102036 SPy1904 SPy1905 hsdR hsdS TRUE 0.986 13.000 0.000 0.001 Y -0.748
 102036 102037 SPy1905 SPy1906 hsdS hsdM TRUE 0.973 13.000 0.000 0.049 Y -0.730
 102038 2137412 SPy1908 SPy_1910 salR salK TRUE 0.913 -19.000 0.000 NA   NA
 2137412 102039 SPy_1910 SPy1911 salK salY TRUE 0.641 40.000 0.000 NA   NA
 102039 102040 SPy1911 SPy1912 salY salX TRUE 0.842 2.000 0.000 1.000   -0.610
 102040 2137413 SPy1912 SPy_1913 salX   TRUE 0.923 -3.000 0.000 NA   NA
 2137413 102041 SPy_1913 SPy1914   salB TRUE 0.361 74.000 0.000 NA   NA
 102041 102042 SPy1914 SPy1915 salB salA FALSE 0.308 83.000 0.000 NA   0.198
 102042 102043 SPy1915 SPy1916 salA lacG FALSE 0.016 503.000 0.000 1.000   -0.211
 102043 102044 SPy1916 SPy1917 lacG lacE TRUE 0.461 88.000 0.000 1.000 Y -0.102
 102044 102045 SPy1917 SPy1918 lacE lacF TRUE 0.994 0.000 0.150 0.012 Y -0.036
 102045 102046 SPy1918 SPy1919 lacF lacD.2 TRUE 0.990 24.000 0.667 1.000 Y -0.709
 102046 102047 SPy1919 SPy1921 lacD.2 lacC.2 TRUE 0.987 4.000 0.000 0.002 Y 0.205
 102047 102048 SPy1921 SPy1922 lacC.2 lacB.2 TRUE 0.745 48.000 0.000 1.000 Y 0.401
 102048 102049 SPy1922 SPy1923 lacB.2 lacA.2 TRUE 0.959 35.000 0.000 0.002 Y -0.532
 102050 102051 SPy1924 SPy1926 lacR.2   FALSE 0.020 656.000 0.000 NA   -0.150
 102051 102052 SPy1926 SPy1927     TRUE 0.919 -10.000 0.000 NA   -0.300
 102052 2137414 SPy1927 SPy_1930     TRUE 0.407 67.000 0.000 NA   NA
 102053 102054 SPy1931 SPy1932 rpsI rplM TRUE 0.996 21.000 0.601 0.023 Y -0.448
 102054 102055 SPy1932 SPy1934 rplM   FALSE 0.029 218.000 0.000 1.000 N 0.084
 102055 102056 SPy1934 SPy1935     TRUE 0.957 -3.000 0.051 NA   0.929
 102056 102057 SPy1935 SPy1936     FALSE 0.245 103.000 0.000 NA   0.967
 102057 102058 SPy1936 SPy1937     TRUE 0.373 97.000 0.036 NA   0.738
 102058 102059 SPy1937 SPy1938     TRUE 0.943 4.000 0.109 NA   -0.521
 102059 102060 SPy1938 SPy1939     TRUE 0.641 47.000 0.003 NA   -0.126
 102060 102061 SPy1939 SPy1940     FALSE 0.091 196.000 0.000 NA   -0.625
 102061 102062 SPy1940 SPy1941   cysS TRUE 0.959 -7.000 0.129 1.000   -0.434
 102062 102063 SPy1941 SPy1942 cysS   TRUE 0.806 28.000 0.002 NA   NA
 102063 102064 SPy1942 SPy1944   cysE FALSE 0.026 479.000 0.000 NA   NA
 102064 102065 SPy1944 SPy1945 cysE   TRUE 0.931 9.000 0.097 NA   -0.731
 102065 102066 SPy1945 SPy1946   pnpA TRUE 0.945 -7.000 0.009 NA   -0.780
 102066 102067 SPy1946 SPy1947 pnpA   FALSE 0.019 281.000 0.000 1.000 N 0.412
 102067 102068 SPy1947 SPy1949     FALSE 0.198 153.000 0.056 1.000   -0.305
 102068 102069 SPy1949 SPy1950     TRUE 0.976 27.000 0.241 0.020   -0.702
 102069 102070 SPy1950 SPy1952     TRUE 0.983 -7.000 0.048 0.012 N NA
 102070 102071 SPy1952 SPy1955   rpsO FALSE 0.014 352.000 0.000 1.000 N NA
 102071 102072 SPy1955 SPy1956 rpsO   FALSE 0.146 158.000 0.000 NA   NA
 102073 102074 SPy1957 SPy1958   def FALSE 0.239 101.000 0.000 NA   -0.876
 102075 102076 SPy1959 SPy1960     TRUE 0.601 131.000 0.414 1.000   0.426
 102076 102077 SPy1960 SPy1961   polC FALSE 0.202 110.000 0.020 1.000 N 0.769
 102077 102078 SPy1961 SPy1962 polC proS FALSE 0.189 255.000 0.070 0.045 N 0.593
 102078 102079 SPy1962 SPy1963 proS   FALSE 0.110 198.000 0.095 1.000 N 0.618
 102079 102080 SPy1963 SPy1964   cdsA FALSE 0.335 73.000 0.040 1.000 N -0.037
 102080 102081 SPy1964 SPy1965 cdsA uppS TRUE 0.964 13.000 0.113 1.000 Y 0.047
 102081 102082 SPy1965 SPy1968 uppS   FALSE 0.074 219.000 0.007 NA N 0.369
 102082 102083 SPy1968 SPy1971     FALSE 0.213 116.000 0.006 NA N 0.277
 102083 102084 SPy1971 SPy1972   pulA FALSE 0.159 115.000 0.000 NA N 0.622
 102084 102085 SPy1972 SPy1973 pulA dexB TRUE 0.582 198.000 0.049 0.008 Y 0.829
 102085 102086 SPy1973 SPy1976 dexB msmK TRUE 0.583 129.000 0.171 1.000 Y 0.471
 102086 102087 SPy1976 SPy1978 msmK lrp FALSE 0.047 298.000 0.071 1.000 N 0.586
 102089 102090 SPy1980 SPy1981   relA TRUE 0.922 15.000 0.177 1.000 N -0.302
 102090 102091 SPy1981 SPy1983 relA scl FALSE 0.045 240.000 0.000 1.000   0.152
 102093 102094 SPy1985 SPy1986     TRUE 0.830 83.000 0.610 1.000   0.364
 102094 102095 SPy1986 SPy1987     FALSE 0.033 358.000 0.000 NA   -0.682
 102095 102096 SPy1987 SPy1988     TRUE 0.977 0.000 0.227 NA   -0.524
 102096 102097 SPy1988 SPy1989     TRUE 0.481 71.000 0.013 NA   -0.234
 102098 102099 SPy1990 SPy1991 pabB trpG TRUE 0.878 33.000 0.009 1.000 Y 0.946
 102099 102100 SPy1991 SPy1992 trpG   TRUE 0.689 33.000 0.035 1.000 N 0.806
 102100 398239 SPy1992 SPy_t56   tRNA-Lys FALSE 0.048 286.000 0.000 NA   NA
 398239 102101 SPy_t56 SPy1994 tRNA-Lys   FALSE 0.180 139.000 0.000 NA   NA
 102101 102102 SPy1994 SPy1995   flaR TRUE 0.604 55.000 0.062 1.000   0.869
 102102 102103 SPy1995 SPy1998 flaR smeZ FALSE 0.042 249.000 0.000 1.000   0.559
 102105 102106 SPy2000 SPy2001 dppA dppB TRUE 0.688 113.000 0.000 0.030 Y -0.121
 102106 102107 SPy2001 SPy2002 dppB dppC TRUE 0.999 -3.000 1.000 0.030 Y 0.677
 102107 102108 SPy2002 SPy2003 dppC dppD TRUE 0.984 12.000 0.333 1.000 Y 0.527
 102108 102109 SPy2003 SPy2004 dppD dppE TRUE 0.999 -16.000 0.750 0.021 Y 0.181
 102110 102111 SPy2005 SPy2006     FALSE 0.128 169.000 0.000 NA   -0.252
 102111 102112 SPy2006 SPy2007   lmb TRUE 0.854 13.000 0.000 NA   -0.643
 102112 102113 SPy2007 SPy2009 lmb   FALSE 0.047 236.000 0.000 1.000   0.506
 102113 102114 SPy2009 SPy2010   scpA TRUE 0.462 97.000 0.000 0.063   -0.569
 102116 102117 SPy2016 SPy2018 sic emm1 FALSE 0.103 189.000 0.000 NA   0.940
 102117 102118 SPy2018 SPy2019 emm1 mga FALSE 0.110 185.000 0.000 NA   0.928
 102118 102119 SPy2019 SPy2023 mga   FALSE 0.021 676.000 0.000 NA   0.938
 102119 102120 SPy2023 SPy2025   isp TRUE 0.937 79.000 1.000 NA   NA
 102120 102121 SPy2025 SPy2026 isp   TRUE 0.494 102.000 0.200 1.000   NA
 102121 102122 SPy2026 SPy2027     TRUE 0.995 -3.000 0.500 1.000 Y -0.820
 102122 102123 SPy2027 SPy2029     TRUE 0.514 94.000 0.267 1.000 N -0.277
 102123 102124 SPy2029 SPy2031     TRUE 0.989 13.000 0.467 1.000 Y -0.205
 102124 102125 SPy2031 SPy2032     TRUE 0.984 -13.000 0.385 NA N -0.706
 102125 102126 SPy2032 SPy2033     FALSE 0.149 423.000 0.333 NA   NA
 102126 102127 SPy2033 SPy2034     TRUE 0.775 27.000 0.000 NA   NA
 102127 102128 SPy2034 SPy2037     FALSE 0.019 756.000 0.000 NA   0.015
 102128 2137415 SPy2037 SPy_2038     FALSE 0.025 480.000 0.000 NA   NA
 2137415 102129 SPy_2038 SPy2039   speB TRUE 0.893 2.000 0.000 NA   NA
 102129 102130 SPy2039 SPy2040 speB   FALSE 0.054 272.000 0.000 NA   NA
 102131 102132 SPy2041 SPy2042   ropB FALSE 0.049 284.000 0.000 NA   NA
 102135 102136 SPy2047 SPy2048 gldA mipB TRUE 0.699 57.000 0.211 1.000 N -0.437
 102136 102137 SPy2048 SPy2049 mipB pflD TRUE 0.963 13.000 0.368 1.000 N -0.124
 102137 102138 SPy2049 SPy2050 pflD   FALSE 0.114 210.000 0.132 1.000 N 0.297
 102138 102139 SPy2050 SPy2051     TRUE 0.999 10.000 0.889 0.012 Y -0.041
 102139 102140 SPy2051 SPy2052     TRUE 0.998 28.000 0.889 0.012 Y -0.614
 102140 102141 SPy2052 SPy2053     FALSE 0.054 288.000 0.091 1.000 N -0.457
 102141 102142 SPy2053 SPy2054     TRUE 0.974 16.000 0.188 1.000 Y 0.001
 102144 102145 SPy2058 SPy2059   pbp2A FALSE 0.032 215.000 0.000 1.000 N NA
 102145 102146 SPy2059 SPy2060 pbp2A   TRUE 0.717 39.000 0.062 NA N -0.822
 102150 102151 SPy2070 SPy2072 groEL groES TRUE 0.977 36.000 0.160 0.007 Y 0.608
 102151 102152 SPy2072 SPy2073 groES clpC FALSE 0.307 178.000 0.036 1.000 Y 0.075
 102152 102153 SPy2073 SPy2074 clpC ctsR TRUE 0.965 0.000 0.188 NA N -0.127
 102153 102154 SPy2074 SPy2077 ctsR csp FALSE 0.288 196.000 0.013 NA Y 0.680
 102154 398243 SPy2077 SPy_t57 csp tRNA-Cys FALSE 0.024 520.000 0.000 NA   NA
 102155 102156 SPy2079 SPy2080 ahpC nox1 TRUE 0.988 21.000 0.551 1.000 Y 0.989
 102158 102159 SPy2082 SPy2083 hutU   TRUE 0.617 89.000 0.086 1.000 Y 0.971
 102159 102160 SPy2083 SPy2084     TRUE 0.966 11.000 0.143 1.000 Y 0.957
 102160 102161 SPy2084 SPy2085   fhs.2 TRUE 0.832 18.000 0.038 1.000 N 0.974
 102161 102162 SPy2085 SPy2087 fhs.2   TRUE 0.885 22.000 0.038 NA   0.953
 102162 102163 SPy2087 SPy2088     FALSE 0.136 220.000 0.062 NA   0.754
 102163 102164 SPy2088 SPy2089   hutH TRUE 0.940 11.000 0.006 1.000 Y 0.898
 102164 102165 SPy2089 SPy2090 hutH hutG TRUE 0.565 186.000 0.000 0.002 Y 0.961
 102167 102168 SPy2092 SPy2093 rpsB tsf TRUE 0.866 134.000 0.748 1.000 Y 0.449
 102169 102170 SPy2095 SPy2096 pepO dexS FALSE 0.033 208.000 0.000 1.000 N 0.530
 102170 102171 SPy2096 SPy2097 dexS   TRUE 0.939 67.000 0.650 1.000 Y 0.199
 102173 102174 SPy2103 SPy2104     TRUE 0.694 42.000 0.007 NA   0.067
 102175 102176 SPy2105 SPy2106 nrdG   TRUE 0.959 0.000 0.159 1.000   -0.436
 102176 102177 SPy2106 SPy2107     TRUE 0.890 9.000 0.041 1.000   0.770
 102177 102178 SPy2107 SPy2110   nrdD FALSE 0.024 357.000 0.000 1.000   0.665
 102178 102179 SPy2110 SPy2111 nrdD   TRUE 0.388 97.000 0.057 NA   0.085
 102179 102180 SPy2111 SPy2112     FALSE 0.028 413.000 0.000 NA   0.057
 102180 102181 SPy2112 SPy2113     TRUE 0.988 12.000 0.651 NA   0.382
 102181 102182 SPy2113 SPy2114     TRUE 0.992 -3.000 0.537 NA   -0.502
 102182 102183 SPy2114 SPy2115     FALSE 0.334 113.000 0.032 NA   -0.763
 102183 102184 SPy2115 SPy2116   recA FALSE 0.027 291.000 0.004 1.000 N -0.308
 102184 102185 SPy2116 SPy2117 recA cinA TRUE 0.390 89.000 0.083 1.000   0.352
 102185 102186 SPy2117 SPy2118 cinA tag TRUE 0.399 69.000 0.011 1.000   -0.872
 102186 102187 SPy2118 SPy2119 tag ruvA TRUE 0.943 10.000 0.012 1.000 Y -0.937
 102187 102188 SPy2119 SPy2120 ruvA lmrP TRUE 0.886 2.000 0.005 1.000   -0.613
 102188 102189 SPy2120 SPy2121 lmrP mutL TRUE 0.844 11.000 0.006 1.000   -0.632
 102189 102190 SPy2121 SPy2122 mutL int4 TRUE 0.423 95.000 0.000 1.000 Y -0.666
 102190 102191 SPy2122 SPy2125 int4   FALSE 0.007 1259.000 0.000 1.000 N NA
 102192 102193 SPy2126 SPy2127     TRUE 0.904 34.000 0.091 1.000 Y -0.556
 102193 102194 SPy2127 SPy2128     TRUE 0.940 10.000 0.000 NA Y -0.854
 102194 102195 SPy2128 SPy2129     TRUE 0.987 0.000 0.400 NA   -0.917
 102195 102196 SPy2129 SPy2130     FALSE 0.057 256.000 0.000 NA   0.513
 102196 102197 SPy2130 SPy2131     TRUE 0.915 -13.000 0.000 NA   -0.503
 102197 102198 SPy2131 SPy2132     TRUE 0.885 3.000 0.000 NA   NA
 102198 102199 SPy2132 SPy2133     TRUE 0.855 12.000 0.000 NA   NA
 102199 102200 SPy2133 SPy2134     TRUE 0.885 3.000 0.000 NA   NA
 102200 102201 SPy2134 SPy2135     TRUE 0.993 1.000 0.714 NA   NA
 102201 102202 SPy2135 SPy2136     TRUE 0.980 -31.000 0.286 NA   0.104
 102202 102203 SPy2136 SPy2140     FALSE 0.020 740.000 0.000 NA   -0.037
 102203 102204 SPy2140 SPy2142     TRUE 0.358 74.000 0.000 NA   0.586
 102204 102205 SPy2142 SPy2144     FALSE 0.029 404.000 0.000 NA   0.245
 102205 102206 SPy2144 SPy2145     TRUE 0.907 -25.000 0.000 NA   0.520
 102206 102207 SPy2145 SPy2147     FALSE 0.121 174.000 0.000 NA   -0.797
 102208 102209 SPy2148 SPy2149 mutS   TRUE 0.951 -13.000 0.031 NA   0.438
 102209 102210 SPy2149 SPy2150   ahrC FALSE 0.271 143.000 0.054 NA   -0.857
 102211 102212 SPy2151 SPy2152 argS   TRUE 0.408 88.000 0.032 NA   0.040
 102213 102214 SPy2153 SPy2154     TRUE 0.959 43.000 0.667 NA   0.857
 102214 102215 SPy2154 SPy2155     TRUE 0.936 20.000 0.156 NA   0.571
 102215 102216 SPy2155 SPy2156   aspS TRUE 0.951 -7.000 0.016 NA   0.004
 102216 102217 SPy2156 SPy2157 aspS hisS TRUE 0.355 338.000 0.161 0.044 Y -0.057
 102218 102219 SPy2159 SPy2160 rpmF rpmG TRUE 0.965 16.000 0.012 0.030   0.892
 102219 102220 SPy2160 SPy2162 rpmG cadD FALSE 0.029 293.000 0.000 NA N 0.038
 102220 102221 SPy2162 SPy2163 cadD cadC TRUE 0.991 12.000 0.875 NA N -0.354
 102221 102222 SPy2163 SPy2164 cadC   TRUE 0.965 30.000 0.571 1.000   -0.367
 102222 102223 SPy2164 SPy2165     TRUE 0.809 66.000 0.400 1.000   0.342
 102223 102224 SPy2165 SPy2166     TRUE 0.997 -3.000 1.000 NA   -0.127
 102224 102225 SPy2166 SPy2169     FALSE 0.018 1211.000 0.000 NA   0.731
 102227 102228 SPy2172 SPy2173     TRUE 0.984 -13.000 0.300 NA   NA
 102228 102229 SPy2173 SPy2174     TRUE 0.987 -3.000 0.350 NA   NA
 102232 102233 SPy2178 SPy2180 rpsD   FALSE 0.018 291.000 0.000 1.000 N NA
 102233 102234 SPy2180 SPy2181     FALSE 0.022 632.000 0.000 NA   NA
 102234 102235 SPy2181 SPy2182   holB TRUE 0.909 17.000 0.030 NA   0.904
 102235 102236 SPy2182 SPy2183 holB rplI TRUE 0.786 30.000 0.100 1.000 N 0.963
 102236 102237 SPy2183 SPy2184 rplI   TRUE 0.942 -3.000 0.119 1.000 N 0.921
 102237 102238 SPy2184 SPy2185   gidA FALSE 0.213 91.000 0.011 1.000 N 0.838
 102238 102239 SPy2185 SPy2186 gidA   FALSE 0.203 124.000 0.005 1.000   0.872
 102239 102240 SPy2186 SPy2188     FALSE 0.018 777.000 0.003 1.000   0.900
 102241 102242 SPy2189 SPy2190 sdhB sdhA TRUE 0.995 12.000 0.221 0.001 Y 0.790
 102243 102244 SPy2191 SPy2193     FALSE 0.022 372.000 0.000 1.000   0.581
 102244 102245 SPy2193 SPy2194     TRUE 0.983 -7.000 0.136 1.000 Y 0.335
 102245 102246 SPy2194 SPy2195     TRUE 0.999 -24.000 0.713 0.020 Y NA
 102246 102247 SPy2195 SPy2196   pgsA TRUE 0.879 -49.000 0.015 1.000 N NA
 102247 102248 SPy2196 SPy2197 pgsA   TRUE 0.908 14.000 0.077 1.000   0.629
 102248 102249 SPy2197 SPy2198     TRUE 0.739 50.000 0.156 1.000   0.028
 102249 102250 SPy2198 SPy2199     TRUE 0.998 2.000 0.872 0.004   0.220
 102251 102252 SPy2200 SPy2201 hasA hasB TRUE 0.874 36.000 0.048 1.000 Y -0.758
 102252 102253 SPy2201 SPy2202 hasB hasC FALSE 0.217 182.000 0.000 1.000 Y NA
 102253 102254 SPy2202 SPy2203 hasC   FALSE 0.029 308.000 0.000 1.000   NA
 102254 102255 SPy2203 SPy2204   recF TRUE 0.963 2.000 0.209 1.000   0.318
 102256 102257 SPy2205 SPy2206   guaB FALSE 0.026 232.000 0.000 1.000 N -0.560
 102257 102258 SPy2206 SPy2207 guaB trsA FALSE 0.022 308.000 0.002 1.000 N -0.759
 102259 102260 SPy2209 SPy2210     TRUE 0.462 79.000 0.027 NA   0.130
 102260 102261 SPy2210 SPy2211     TRUE 0.441 83.000 0.040 NA   -0.023
 398242 398241 SPy_t58 SPy_t59 tRNA-Asn tRNA-Glu TRUE 0.704 34.000 0.000 NA   NA
 398241 2137417 SPy_t59 SPy_2214 tRNA-Glu   FALSE 0.091 200.000 0.000 NA   NA
 102263 102264 SPy2216 SPy2217 htrA spoJ TRUE 0.400 59.000 0.015 1.000 N -0.193
 102264 100568 SPy2217 SPy0002 spoJ dnaA FALSE 0.039 233.000 0.002 1.000 N -0.188